Citrus Sinensis ID: 048801
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1715 | 2.2.26 [Sep-21-2011] | |||||||
| Q9NSI6 | 2320 | Bromodomain and WD repeat | yes | no | 0.336 | 0.248 | 0.310 | 7e-79 | |
| Q921C3 | 2304 | Bromodomain and WD repeat | yes | no | 0.316 | 0.235 | 0.313 | 1e-78 | |
| Q8VDD9 | 1821 | PH-interacting protein OS | no | no | 0.332 | 0.313 | 0.320 | 3e-78 | |
| Q8WWQ0 | 1821 | PH-interacting protein OS | no | no | 0.332 | 0.313 | 0.320 | 3e-78 | |
| Q6RI45 | 1802 | Bromodomain and WD repeat | no | no | 0.326 | 0.310 | 0.316 | 3e-74 | |
| A2AHJ4 | 1799 | Bromodomain and WD repeat | no | no | 0.321 | 0.306 | 0.313 | 3e-73 | |
| Q54MP8 | 2200 | Bromodomain and WD repeat | yes | no | 0.150 | 0.117 | 0.289 | 2e-29 | |
| Q00808 | 1356 | Vegetative incompatibilit | no | no | 0.213 | 0.269 | 0.248 | 2e-21 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.242 | 0.247 | 0.243 | 1e-20 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.226 | 0.254 | 0.239 | 3e-20 |
| >sp|Q9NSI6|BRWD1_HUMAN Bromodomain and WD repeat-containing protein 1 OS=Homo sapiens GN=BRWD1 PE=1 SV=4 | Back alignment and function desciption |
|---|
Score = 296 bits (759), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 218/702 (31%), Positives = 333/702 (47%), Gaps = 125/702 (17%)
Query: 51 EVYFLIIHFLSSGPCQRTLGLLWNELLEHQLLPRRYHAWFSRSGVNSGNDNDDGISFPLS 110
E+YFLI +LS+GPC+R +L EL ++QLLP+R W GN+++ S
Sbjct: 17 ELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLD-W-------EGNEHNR------S 62
Query: 111 YNKLVERYPHIEWDHLVKLLRQL--LLYKASPFHGRIGGIAPNAADVPTLLGSGSFSLLE 168
Y +LV H+ DHL+++ +++ +L K P P+ + V +LLG+G SLL
Sbjct: 63 YEELVLSNKHVAPDHLLQICQRIGPMLDKEIP---------PSISRVTSLLGAGRQSLLR 113
Query: 169 CDRSMKYKQVK--PLPAYLRW--PHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIA 224
+ ++ K A R P M + +L EI G + + CS ++ A
Sbjct: 114 TAKDCRHTVWKGSAFAALHRGRPPEMPVNYGSPPNLVEIHRG-----KQLTGCST-FSTA 167
Query: 225 KPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGH 284
P TM Q ++ +++ GH AVYC FDR+G + TGSDD LVKIWS L++ RGH
Sbjct: 168 FPGTMYQHIKMHRRILGHLSAVYCVAFDRTGHRIFTGSDDCLVKIWSTHNGRLLSTLRGH 227
Query: 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQ 344
+I+D+AV+ NT++A+ S D +IRVW L P++VL+GHTG++T++ FSP +
Sbjct: 228 SAEISDMAVNYENTMIAAGSCDKIIRVWCLRTCAPVAVLQGHTGSITSLQFSPMAKGSQR 287
Query: 345 -LLSSSDDGTCRI--WDARYSQYSPR--IYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399
++S+ DGT WD ++SPR + KP + Q
Sbjct: 288 YMVSTGADGTVCFWQWDLESLKFSPRPLKFTEKPRPGV---------------------Q 326
Query: 400 ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGC 459
+LC +++ G TGS+D R++ + E ++ L H + V+ +QF
Sbjct: 327 MLCSSFSVGGMFLATGSTDHVIRMYFLGFEAPE-------KIAELESHTDKVDSIQFCNN 379
Query: 460 AVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAY 519
D ++ SRDG+A IW R
Sbjct: 380 G--------------------------DRFLSGSRDGTARIW---------------RFE 398
Query: 520 HLKVPPPPLPPQPPRGG----PRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV 575
L+ L G +R + P+ V MI W+ ++ V+ A+ D + VWN+
Sbjct: 399 QLEWRSILLDMATRISGDLSSEEERFM-KPK-VTMIAWNQNDSIVVTAVNDHVLKVWNSY 456
Query: 576 DGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY-----EIGR 630
G L+H+L GH+ +VL+ HPF+ RI +SAG+DG +WDI +GT ++ Y G
Sbjct: 457 TGQLLHNLMGHADEVFVLETHPFDSRIMLSAGHDGSIFIWDITKGTKMKHYFNMIEGQGH 516
Query: 631 FKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKYDQFFLGDYRPLIRDSLGNVL 690
+ D KFS DG +D G + + G + + FF DYRPLIRDS VL
Sbjct: 517 GAVFDCKFSQDGQHFACTDSHGHLLIFGFGCSKPYEKIPDQMFFHTDYRPLIRDSNNYVL 576
Query: 691 DQETQLVPHRRNIQDP--LCDSSMIPYEEPYQSMYQQRRLGA 730
D++TQ PH + P L D P+ YQ + R A
Sbjct: 577 DEQTQQAPH---LMPPPFLVDVDGNPHPTKYQRLVPGRENSA 615
|
May be a transcriptional activator. May be involved in chromatin remodeling (By similarity). Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Homo sapiens (taxid: 9606) |
| >sp|Q921C3|BRWD1_MOUSE Bromodomain and WD repeat-containing protein 1 OS=Mus musculus GN=Brwd1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 295 bits (756), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 212/676 (31%), Positives = 321/676 (47%), Gaps = 134/676 (19%)
Query: 51 EVYFLIIHFLSSGPCQRTLGLLWNELLEHQLLPRRYHAWFSRSGVNSGNDNDDGISFPLS 110
E+YFLI +LS+GPC+R +L EL ++QLLP+R W GN+++ S
Sbjct: 17 ELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLD-W-------EGNEHNR------S 62
Query: 111 YNKLVERYPHIEWDHLVKLLRQL--LLYKASPFHGRIGGIAPNAADVPTLLGSGSFSLLE 168
Y +LV H+ DHL+++ +++ +L K P P+ + V +LLG+G SLL
Sbjct: 63 YEELVLSNKHVAPDHLLQICQRIGPMLDKEVP---------PSISRVTSLLGAGRQSLLR 113
Query: 169 CDRSMKYKQVK--PLPAYLRW--PHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIA 224
+ ++ K A R P M + SL EI G R + CS ++ A
Sbjct: 114 TAKDCRHTVWKGSAFAALHRGRPPEMPVNYGPPPSLVEIHRG-----RQLTGCST-FSTA 167
Query: 225 KPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGH 284
P TM Q ++ +++ GH AVYC FDR+G + TGSDD LVKIWS L++ RGH
Sbjct: 168 FPGTMYQHIKMHRRILGHLSAVYCVAFDRTGHRIFTGSDDCLVKIWSTHNGRLLSTLRGH 227
Query: 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQ 344
+I+D+AV+ NTL+A+ S D +IRVW L P++VL+GHTG++T++ FSP +
Sbjct: 228 SAEISDMAVNYENTLIAAGSCDKIIRVWCLRTCAPVAVLQGHTGSITSLQFSPMAKGPQR 287
Query: 345 -LLSSSDDGTCRI--WDARYSQYSPR--IYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399
++S+ DGT WD ++SPR + KP + Q
Sbjct: 288 YMVSTGADGTVCFWQWDLESLKFSPRPLKFTEKPRPGV---------------------Q 326
Query: 400 ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGC 459
+LC +++ G TGS+D R++ D+ + I EL+ H + V+ +QF
Sbjct: 327 MLCSSFSVGGMFLATGSTDHVIRMYFLGF----DAPEKIAELE---SHTDKVDSIQFCNN 379
Query: 460 AVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW-----------IPRSRRS 508
D ++ SRDG+A IW + S R
Sbjct: 380 G--------------------------DRFLSGSRDGTARIWRFEQLEWRSILLDMSARI 413
Query: 509 HGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCR 568
G + + P+ V MI W+ D+ V+ A+ D
Sbjct: 414 SGDTSSEEERF--------MKPK----------------VTMIAWNQDDSTVVTAVNDHV 449
Query: 569 ICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY-- 626
+ VW++ G L+H+L GH+ +VL+ HPF+ RI +SAG+DG +WDI +G ++ Y
Sbjct: 450 LKVWSSYTGQLLHNLLGHADEVFVLETHPFDSRIMLSAGHDGSIFIWDITKGIKMKHYFN 509
Query: 627 ---EIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKYDQFFLGDYRPLIR 683
G + D KFS DG +D G + + G + + FF DYRPLIR
Sbjct: 510 MIEGQGHGAVFDCKFSQDGQHFACTDSHGHLLIFGFGCSKPYEKIPDQMFFHTDYRPLIR 569
Query: 684 DSLGNVLDQETQLVPH 699
DS VLD++TQ PH
Sbjct: 570 DSNNYVLDEQTQQAPH 585
|
May be a transcriptional activator. May be involved in chromatin remodeling. Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Mus musculus (taxid: 10090) |
| >sp|Q8VDD9|PHIP_MOUSE PH-interacting protein OS=Mus musculus GN=Phip PE=1 SV=2 | Back alignment and function description |
|---|
Score = 295 bits (755), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 225/702 (32%), Positives = 329/702 (46%), Gaps = 132/702 (18%)
Query: 51 EVYFLIIHFLSSGPCQRTLGLLWNELLEHQLLPRRYHAWFSRSGVNSGNDNDDGISFPLS 110
E+YFLI FL GPCQ+ +L E+ E +LLPRR W G P +
Sbjct: 14 ELYFLIARFLEDGPCQQAAQVLIREVAEKELLPRRTD-W-------------TGKEHPRT 59
Query: 111 YNKLVERYPHIEWDHLVKLLRQL--LLYKASPFHGRIGGIAPNAADVPTLLGSGSFSLLE 168
Y LV+ Y H+ DHL+++ +L LL + P + V TLLG+G SLL
Sbjct: 60 YQNLVKYYRHLAPDHLLQICHRLGPLLEQEIP---------QSVPGVQTLLGAGRQSLLR 110
Query: 169 CDRSMKYKQVK-------------PLPAYLRWPHMQADQVHGLSLREIGGGFKKHHRAPS 215
++S K+ K P P AD + R++ G ++ P
Sbjct: 111 TNKSCKHVVWKGSALAALHCGRPPESPVNYGSPPSIADTLFS---RKLNGKYRLERLVP- 166
Query: 216 VCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA 275
+A Y Q M+ K++ GH +VYC FDR+GR + TGSDD LVKIW+ +
Sbjct: 167 --TAVY---------QHMKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDDG 215
Query: 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAF 335
LA+ RGH +I+D+AV+ NT++A+ S D +IRVW L P++VL+GH+ ++T++ F
Sbjct: 216 RLLATLRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQF 275
Query: 336 SPRPSAIYQLLSSSD-DGT-CR-IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392
SP S + LSS+ DGT C +WDA + +PR P+
Sbjct: 276 SPLCSGSKRYLSSTGADGTICFWLWDAGTLKINPR----------------PTKFTERPR 319
Query: 393 NGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVN 452
G+ Q++C +++A G TGS+D RV+ S QP ++ L H + V+
Sbjct: 320 PGV---QMICSSFSAGGMFLATGSTDHIIRVY------FFGSGQP-EKISELEFHTDKVD 369
Query: 453 YVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKV 512
+QFS + + V+ SRDG+A IW + R
Sbjct: 370 SIQFSNTS--------------------------NRFVSGSRDGTARIWQFKRR------ 397
Query: 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 572
W ++ L + P G ++ T V M+ W + V+ A+ + + VW
Sbjct: 398 -EW-KSILLDMATRPAGQN--LQGIEDKI--TKMKVTMVAWDRHDNTVITAVNNMTLKVW 451
Query: 573 NAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY-----E 627
N+ G L+H L GH +VL+ HPF+PR+ SAG+DG IVWD+ G +R Y
Sbjct: 452 NSYTGQLIHVLMGHEDEVFVLEPHPFDPRVLFSAGHDGNVIVWDLARGVKVRSYFNMIEG 511
Query: 628 IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKYDQ-FFLGDYRPLIRDSL 686
G + D K SPDG +D G + + G S+ D DQ FF DYRPLIRD+
Sbjct: 512 QGHGAVFDCKCSPDGQHFACTDSHGHLLIFGFGSS-SKYDKIADQMFFHSDYRPLIRDAN 570
Query: 687 GNVLDQETQLVPHRRNIQDP--LCDSSMIPYEEPYQSMYQQR 726
VLD++TQ PH + P L D P+ YQ + R
Sbjct: 571 NFVLDEQTQQAPH---LMPPPFLVDVDGNPHPSRYQRLVPGR 609
|
Probable regulator of the insulin and insulin-like growth factor signaling pathways. Stimulates cell proliferation through regulation of cyclin transcription and has an anti-apoptotic activity through AKT1 phosphorylation and activation. Plays a role in the regulation of cell morphology and cytoskeletal organization. Mus musculus (taxid: 10090) |
| >sp|Q8WWQ0|PHIP_HUMAN PH-interacting protein OS=Homo sapiens GN=PHIP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 295 bits (754), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 225/702 (32%), Positives = 328/702 (46%), Gaps = 132/702 (18%)
Query: 51 EVYFLIIHFLSSGPCQRTLGLLWNELLEHQLLPRRYHAWFSRSGVNSGNDNDDGISFPLS 110
E+YFLI FL GPCQ+ +L E+ E +LLPRR W G P +
Sbjct: 14 ELYFLIARFLEDGPCQQAAQVLIREVAEKELLPRRTD-W-------------TGKEHPRT 59
Query: 111 YNKLVERYPHIEWDHLVKLLRQL--LLYKASPFHGRIGGIAPNAADVPTLLGSGSFSLLE 168
Y LV+ Y H+ DHL+++ +L LL + P + V TLLG+G SLL
Sbjct: 60 YQNLVKYYRHLAPDHLLQICHRLGPLLEQEIP---------QSVPGVQTLLGAGRQSLLR 110
Query: 169 CDRSMKYKQVK-------------PLPAYLRWPHMQADQVHGLSLREIGGGFKKHHRAPS 215
++S K+ K P P AD + R++ G ++ P
Sbjct: 111 TNKSCKHVVWKGSALAALHCGRPPESPVNYGSPPSIADTLFS---RKLNGKYRLERLVP- 166
Query: 216 VCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA 275
+A Y Q M+ K++ GH +VYC FDR+GR + TGSDD LVKIW+ +
Sbjct: 167 --TAVY---------QHMKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDDG 215
Query: 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAF 335
LA+ RGH +I+D+AV+ NT++A+ S D +IRVW L P++VL+GH+ ++T++ F
Sbjct: 216 RLLATLRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQF 275
Query: 336 SPRPSAIYQLLSSSD-DGTCR--IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392
SP S + LSS+ DGT +WDA + +PR P+
Sbjct: 276 SPLCSGSKRYLSSTGADGTICFWLWDAGTLKINPR----------------PAKFTERPR 319
Query: 393 NGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVN 452
G+ Q++C +++A G TGS+D RV+ S QP ++ L H + V+
Sbjct: 320 PGV---QMICSSFSAGGMFLATGSTDHIIRVY------FFGSGQP-EKISELEFHTDKVD 369
Query: 453 YVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKV 512
+QFS + + V+ SRDG+A IW + R
Sbjct: 370 SIQFSNTS--------------------------NRFVSGSRDGTARIWQFKRR------ 397
Query: 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 572
W ++ L + P G ++ T V M+ W + V+ A+ + + VW
Sbjct: 398 -EW-KSILLDMATRPAGQN--LQGIEDKI--TKMKVTMVAWDRHDNTVITAVNNMTLKVW 451
Query: 573 NAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY-----E 627
N+ G L+H L GH +VL+ HPF+PR+ SAG+DG IVWD+ G IR Y
Sbjct: 452 NSYTGQLIHVLMGHEDEVFVLEPHPFDPRVLFSAGHDGNVIVWDLARGVKIRSYFNMIEG 511
Query: 628 IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKYDQ-FFLGDYRPLIRDSL 686
G + D K SPDG +D G + + G S+ D DQ FF DYRPLIRD+
Sbjct: 512 QGHGAVFDCKCSPDGQHFACTDSHGHLLIFGFG-SSSKYDKIADQMFFHSDYRPLIRDAN 570
Query: 687 GNVLDQETQLVPHRRNIQDP--LCDSSMIPYEEPYQSMYQQR 726
VLD++TQ PH + P L D P+ YQ + R
Sbjct: 571 NFVLDEQTQQAPH---LMPPPFLVDVDGNPHPSRYQRLVPGR 609
|
Probable regulator of the insulin and insulin-like growth factor signaling pathways. Stimulates cell proliferation through regulation of cyclin transcription and has an anti-apoptotic activity through AKT1 phosphorylation and activation. Plays a role in the regulation of cell morphology and cytoskeletal organization. Homo sapiens (taxid: 9606) |
| >sp|Q6RI45|BRWD3_HUMAN Bromodomain and WD repeat-containing protein 3 OS=Homo sapiens GN=BRWD3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 281 bits (720), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 209/661 (31%), Positives = 306/661 (46%), Gaps = 101/661 (15%)
Query: 51 EVYFLIIHFLSSGPCQRTLGLLWNELLEHQLLPRRYHAWFSRSGVNSGNDNDDGISFPLS 110
E+Y+LI FL SGPC ++ +L EL EHQL+PRR W +G S
Sbjct: 11 ELYYLIARFLQSGPCNKSAQVLVQELEEHQLIPRRLD-W-------------EGKEHRRS 56
Query: 111 YNKLVERYPHIEWDHLVKLLRQL--LLYKASPFHGRIGGIAPNAADVPTLLGSGSFSLL- 167
+ LV HI D+L+K+ ++ LL K P + V TLLG G SLL
Sbjct: 57 FEDLVAANAHIPPDYLLKICERIGPLLDKEIP---------QSVPGVQTLLGVGRQSLLR 107
Query: 168 ---ECDRSMKYKQVKPLPAYLRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIA 224
+C ++ R P + + V ++ I R + CS +
Sbjct: 108 DAKDCKSTLWNGSAFAALHRGRPPELPVNYVKPPNVVNITSA-----RQLTGCSR-FGHI 161
Query: 225 KPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGH 284
PS+ Q ++ K++ GH +VYC FDRSGR + TGSDD LVKIW+ + LA+ RGH
Sbjct: 162 FPSSAYQHIKMHKRILGHLSSVYCVAFDRSGRRIFTGSDDCLVKIWATDDGRLLATLRGH 221
Query: 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQ 344
+I+D+AV+ NTL+A+ S D V+RVW L P++VL+GH+ ++T+I F P +
Sbjct: 222 SAEISDMAVNYENTLIAAGSCDKVVRVWCLRTCAPVAVLQGHSASITSIQFCPSTKGTNR 281
Query: 345 LLSSSD-DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCC 403
L+S+ DGT W R + P S G+ QI C
Sbjct: 282 YLTSTGADGTICFWQWHVKTMKFR--------------DRPVKFTERSRPGV---QISCS 324
Query: 404 AYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVAS 463
++++ G TGS+D R++ SE P ++ L H + V VQF +
Sbjct: 325 SFSSGGMFITTGSTDHVIRIYYL------GSEVP-EKIAELESHTDKVVAVQFCNNGDSL 377
Query: 464 RSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523
R V+ SRDG+A IW + + W ++ L +
Sbjct: 378 R------------------------FVSGSRDGTARIWQYQQQ-------EW-KSIVLDM 405
Query: 524 PPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL 583
P G + T V M+ W + V+ A+ + + VWN++ G L+H+L
Sbjct: 406 ATKMTGNNLPSGEDK----ITKLKVTMVAWDRYDTTVITAVNNFLLKVWNSITGQLLHTL 461
Query: 584 TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY-----EIGRFKLVDGKF 638
+GH +VL+ HPF+ RI +SAG+DG +WD+ GT IR Y G + D KF
Sbjct: 462 SGHDDEVFVLEAHPFDQRIILSAGHDGNIFIWDLDRGTKIRNYFNMIEGQGHGAVFDCKF 521
Query: 639 SPDGTSIVLSDDVGQIYLLNTGQGESQKDAKYDQFFLGDYRPLIRDSLGNVLDQETQLVP 698
SPDG +D G + L G + + FF DYRPLIRD+ VLD++TQ P
Sbjct: 522 SPDGNHFACTDSHGHLLLFGFGCSKYYEKIPDQMFFHTDYRPLIRDANNYVLDEQTQQAP 581
Query: 699 H 699
H
Sbjct: 582 H 582
|
Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Homo sapiens (taxid: 9606) |
| >sp|A2AHJ4|BRWD3_MOUSE Bromodomain and WD repeat-containing protein 3 OS=Mus musculus GN=Brwd3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (711), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 210/669 (31%), Positives = 304/669 (45%), Gaps = 117/669 (17%)
Query: 51 EVYFLIIHFLSSGPCQRTLGLLWNELLEHQLLPRRYHAWFSRSGVNSGNDNDDGISFPLS 110
E+Y+LI FL SGPC ++ +L EL EHQL+PRR W +G S
Sbjct: 11 ELYYLIARFLQSGPCNKSAQVLVQELEEHQLIPRRLD-W-------------EGKEHRRS 56
Query: 111 YNKLVERYPHIEWDHLVKLLRQL--LLYKASPFHGRIGGIAPNAADVPTLLGSGSFSLL- 167
+ LV HI D+L+K+ ++ LL K P + V TLLG G SLL
Sbjct: 57 FEDLVAANAHIPPDYLLKICERIGPLLDKEIP---------QSVPGVQTLLGVGRQSLLR 107
Query: 168 ---ECDRSMKYKQVKPLPAYLRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIA 224
+C ++ R P + + V ++ I R + CS ++
Sbjct: 108 DAKDCKSTLWNGSAFAALHRGRPPELPVNYVKPPNVVNITSA-----RQLTGCSR-FSHV 161
Query: 225 KPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGH 284
PS+ Q ++ K++ GH +VYC FDRSGR + TGSDD LVKIW+ + LA+ RGH
Sbjct: 162 FPSSAYQHIKMHKRILGHLSSVYCVAFDRSGRRIFTGSDDCLVKIWATDDGRLLATLRGH 221
Query: 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQ 344
+I+D+AV+ NTL+A+ S D V+RVW L P++VL+GH+ ++T+I F P +
Sbjct: 222 SAEISDMAVNYENTLIAAGSCDKVVRVWCLRTCAPVAVLQGHSASITSIQFCPSTKGTTR 281
Query: 345 LLSSSD-DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCC 403
L+S+ DGT W R + P S G+ QI C
Sbjct: 282 YLTSTGADGTICFWQWHVKTMKFR--------------DRPVKFTERSRPGV---QISCS 324
Query: 404 AYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVAS 463
++++ G TGS+D R++ SE P ++ L H + V VQF +
Sbjct: 325 SFSSGGMFITTGSTDHVIRIYYL------GSEIP-EKIAELESHTDKVVAVQFCNNGDSL 377
Query: 464 RSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKV--------GRW 515
R V+ SRDG+A IW + + V G
Sbjct: 378 R------------------------FVSGSRDGTARIWQYQQQEWKSIVLDMATKMSGNN 413
Query: 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV 575
+ KV T V M+ W + V+ A+ + + VWN+V
Sbjct: 414 LTSAEDKV--------------------TKLKVTMVAWDRYDTTVITAVNNFLLKVWNSV 453
Query: 576 DGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY-----EIGR 630
G L+H+L+GH +VL+ HPF+ RI +SAG+DG +WD+ GT IR Y G
Sbjct: 454 TGQLLHTLSGHDDEVFVLEAHPFDQRIILSAGHDGNIFIWDLDRGTKIRNYFNMIEGQGH 513
Query: 631 FKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKYDQFFLGDYRPLIRDSLGNVL 690
+ D KFSPDG +D G + L G + + FF DYRPLIRD+ VL
Sbjct: 514 GAVFDCKFSPDGNHFACTDSHGHLLLFGFGCSKYYEKIPDQMFFHTDYRPLIRDANNYVL 573
Query: 691 DQETQLVPH 699
D++TQ PH
Sbjct: 574 DEQTQQAPH 582
|
Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Mus musculus (taxid: 10090) |
| >sp|Q54MP8|Y5837_DICDI Bromodomain and WD repeat-containing DDB_G0285837 OS=Dictyostelium discoideum GN=DDB_G0285837 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 149/314 (47%), Gaps = 56/314 (17%)
Query: 396 QSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455
++++I N GT+ V S D+ ++WS + P ++ L GH + +Q
Sbjct: 549 KTNEITGTTMNKGGTLIV-ASVDSSLKIWSTLFN-------PPKLVNTLEGHPTTILALQ 600
Query: 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW 515
+S + D IV+ S DG+ IIW R S G +W
Sbjct: 601 YSHGS--------------------------DAIVSGSYDGTVIIW----RHSGGP--KW 628
Query: 516 TRA-YHLK-VPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 573
+++K P P+ R + ++WS D+RF++ + I VWN
Sbjct: 629 DHVIFNIKNTQRPNQANSHPKKVARSKAT-----FKNVIWSHDDRFIITTDYNM-IRVWN 682
Query: 574 AVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG---- 629
++DGS + H++ YV HPF+ R+ MS+GYD + I+W I G I+ + +
Sbjct: 683 SLDGSFHLEMAEHTSEVYVTSCHPFDSRLIMSSGYDSQVILWSIETGEIIKKFVLQEPGF 742
Query: 630 RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKY----DQFFLGDYRPLIRDS 685
+ +++DG FSPDG ++++ G+ ++ G G + K +Q+FL DY PLIRD+
Sbjct: 743 QCQILDGCFSPDGQKFIVTNSTGKWFMFELGLGSDINNLKKLVPNEQYFLTDYHPLIRDA 802
Query: 686 LGNVLDQETQLVPH 699
GNVLD+ TQ PH
Sbjct: 803 NGNVLDELTQTPPH 816
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 108/435 (24%), Positives = 170/435 (39%), Gaps = 69/435 (15%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
+ L GH +V F G+ V +GSDD+ +KIW + + GH G + +A S +
Sbjct: 835 QTLEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPD 894
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356
VAS S+D I++W G L GH G V ++AFSP ++ S SDD T +I
Sbjct: 895 RERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQ---RVASGSDDHTIKI 951
Query: 357 WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH--QILCCAYNANGTVFVT 414
WDA + + L+ H +L A++ +G +
Sbjct: 952 WDAASG---------------------------TCTQTLEGHGSSVLSVAFSPDGQRVAS 984
Query: 415 GSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVASRSAMSDAFK 472
GS D ++W + + L GH V V FS G VAS S
Sbjct: 985 GSGDKTIKIWDTASGTCTQT---------LEGHGGSVWSVAFSPDGQRVASGS------- 1028
Query: 473 EENVPKFKNSWFCHDNIVTCSRDG-----SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPP 527
++ K W T + +G ++++ P +R V + + +K+
Sbjct: 1029 DDKTIKI---WDTASGTCTQTLEGHGGWVQSVVFSPDGQR----VASGSDDHTIKI---- 1077
Query: 528 LPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHS 587
G Q L V + +S D + V + +D I +W+A G+ +L GH
Sbjct: 1078 --WDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHG 1135
Query: 588 ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVL 647
+ + P R+A S DG +WD GT + E + FSPDG +
Sbjct: 1136 GWVHSVAFSPDGQRVA-SGSIDGTIKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRVAS 1194
Query: 648 SDDVGQIYLLNTGQG 662
I + +T G
Sbjct: 1195 GSSDKTIKIWDTASG 1209
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 120/492 (24%), Positives = 198/492 (40%), Gaps = 76/492 (15%)
Query: 223 IAKPSTMVQ---KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLA 279
+A +T+ Q +MQ +L GH+D V R G+ + +GS D+ +K+WS +
Sbjct: 1049 LATVTTLQQALFEMQERNRLEGHKDGVISISISRDGQTIASGSLDKTIKLWSRDGRL-FR 1107
Query: 280 SCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRP 339
+ GHE + ++ S + +AS +D I++W+ DG + + GH V + FSP
Sbjct: 1108 TLNGHEDAVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVYFSPDG 1167
Query: 340 SAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399
L S+S D + ++WD Q +TG S
Sbjct: 1168 K---NLASASSDHSIKLWDTTSGQLLM---------TLTG----------------HSAG 1199
Query: 400 ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS-- 457
++ ++ +G GS D ++W Q L L+GH++ VN + FS
Sbjct: 1200 VITVRFSPDGQTIAAGSEDKTVKLW---------HRQDGKLLKTLNGHQDWVNSLSFSPD 1250
Query: 458 GCAVASRSA--------MSDAFKEENVPKFKNS-W---FCHDN--IVTCSRDGSAIIWIP 503
G +AS SA ++D + + +S W F D I + SRD + +W
Sbjct: 1251 GKTLASASADKTIKLWRIADGKLVKTLKGHNDSVWDVNFSSDGKAIASASRDNTIKLWNR 1310
Query: 504 RSRRSHGKVGRWTRAYHLKVPPPPLPP------------QPPRGGPRQRLLPTPRGVNMI 551
G Y + P Q P P + +L GV +
Sbjct: 1311 HGIELETFTGHSGGVYAVNFLPDSNIIASASLDNTIRLWQRPLISPLE-VLAGNSGVYAV 1369
Query: 552 VWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGR 611
+ D + A D I +W++ DGSL+ +L G+ A Y + P IA SA D
Sbjct: 1370 SFLHDGSIIATAGADGNIQLWHSQDGSLLKTLPGNKA-IYGISFTPQGDLIA-SANADKT 1427
Query: 612 TIVWDIWEGTPIRIYEIGRFKLVDG-KFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAK- 669
+W + +G ++ IG V+ FSPDG ++ + + L N G+ +K K
Sbjct: 1428 VKIWRVRDGKALKTL-IGHDNEVNKVNFSPDGKTLASASRDNTVKLWNVSDGKFKKTLKG 1486
Query: 670 -YDQFFLGDYRP 680
D+ F + P
Sbjct: 1487 HTDEVFWVSFSP 1498
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 111/463 (23%), Positives = 183/463 (39%), Gaps = 75/463 (16%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
Q +K +GH V +F + + +GS D+ V++W + + CL +GH G + +A
Sbjct: 939 QCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAF 998
Query: 294 SSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT 353
+ + +++A+ S D +R+W + + +GHT V ++ FS + L S SDD T
Sbjct: 999 NLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGA---MLASGSDDQT 1055
Query: 354 CRIWD----------------ARYSQYSP--RIYLPKPPDAITGKSNVPSNNGPSSSNGL 395
R+WD R +SP + D I ++ S N + G
Sbjct: 1056 VRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGY 1115
Query: 396 QSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455
S + ++ NG GSSD R+W L L GH N VN V
Sbjct: 1116 TS-WVRFLVFSPNGVTLANGSSDQIVRLWDISSKKC---------LYTLQGHTNWVNAVA 1165
Query: 456 FS--GCAVASRSAMS-------DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 506
FS G +AS S + K + + SW N V + DGS +
Sbjct: 1166 FSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWV---NSVVFNPDGSTL------- 1215
Query: 507 RSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG----VNMIVWSLDNRFVLA 562
+ G + R + + + L T +G VN +V++ D + +
Sbjct: 1216 -ASGSSDQTVRLWEIN---------------SSKCLCTFQGHTSWVNSVVFNPDGSMLAS 1259
Query: 563 AIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIV--WDIWEG 620
D + +W+ +H+ GH +++V V FNP +M A G V W+I
Sbjct: 1260 GSSDKTVRLWDISSSKCLHTFQGH--TNWVNSV-AFNPDGSMLASGSGDQTVRLWEISSS 1316
Query: 621 TPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663
+ ++ + FSPDGT + D + L + GE
Sbjct: 1317 KCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGE 1359
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1715 | ||||||
| 225437555 | 1766 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 0.962 | 0.646 | 0.0 | |
| 225431924 | 1756 | PREDICTED: uncharacterized protein LOC10 | 0.984 | 0.961 | 0.584 | 0.0 | |
| 356501869 | 1719 | PREDICTED: uncharacterized protein LOC10 | 0.945 | 0.943 | 0.575 | 0.0 | |
| 356536691 | 1695 | PREDICTED: uncharacterized protein LOC10 | 0.953 | 0.964 | 0.575 | 0.0 | |
| 449433431 | 1729 | PREDICTED: uncharacterized protein LOC10 | 0.956 | 0.948 | 0.533 | 0.0 | |
| 297743976 | 1549 | unnamed protein product [Vitis vinifera] | 0.608 | 0.673 | 0.728 | 0.0 | |
| 357442265 | 1910 | WD-40 repeat protein-like protein [Medic | 0.960 | 0.862 | 0.509 | 0.0 | |
| 296083262 | 1569 | unnamed protein product [Vitis vinifera] | 0.676 | 0.739 | 0.628 | 0.0 | |
| 356558137 | 1773 | PREDICTED: uncharacterized protein LOC10 | 0.621 | 0.601 | 0.657 | 0.0 | |
| 356532519 | 1777 | PREDICTED: uncharacterized protein LOC10 | 0.613 | 0.592 | 0.661 | 0.0 |
| >gi|225437555|ref|XP_002270469.1| PREDICTED: uncharacterized protein LOC100248563 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2169 bits (5621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1151/1781 (64%), Positives = 1340/1781 (75%), Gaps = 81/1781 (4%)
Query: 1 MDYWKLSSSSGAPSLGKAPLKFSSTVQEMAQLEQQDMVANQVVEADVDLREVYFLIIHFL 60
MD+ K SSS APSL PL FS+ + E Q ++++ + V + D+DLREVYFLI+HFL
Sbjct: 1 MDFQKCKSSSEAPSLSMVPLSFSNKLHERPQCQERN-TDHVVADVDIDLREVYFLIMHFL 59
Query: 61 SSGPCQRTLGLLWNELLEHQLLPRRYHAWFSRSGVNSGNDNDDGISFPLSYNKLVERYPH 120
S+GPCQ+T G WNELLEH+LLPRRYHAW+SRSG SG++ND+G SFPL YN LVERYPH
Sbjct: 60 SAGPCQKTFGQFWNELLEHELLPRRYHAWYSRSGACSGDENDNGFSFPLGYNNLVERYPH 119
Query: 121 IEWDHLVKLLRQLLLYKASPFHGRIGGIAPNAADVPTLLGSGSFSLLECDRSMKYKQVKP 180
I DHLVKLL+QL+L A P HG +GG AP+A DVPTLLG+GSFSLL+C + + KQVKP
Sbjct: 120 IGKDHLVKLLKQLMLNTAPPLHGEVGGNAPSAVDVPTLLGTGSFSLLDCHKKKENKQVKP 179
Query: 181 LPAYLRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLR 240
P YLRWPHMQADQV GLSLREIGGGF KHHRAPS+ SACYAIAKPSTMVQ+MQN+KKLR
Sbjct: 180 PPDYLRWPHMQADQVRGLSLREIGGGFTKHHRAPSIRSACYAIAKPSTMVQRMQNMKKLR 239
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV 300
GHRDAVYCAIFDRSGR+VITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNN LV
Sbjct: 240 GHRDAVYCAIFDRSGRYVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNVLV 299
Query: 301 ASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360
ASASNDF+IRVWRLPDGLPISVLRGHTGAVTAIAFSPRPS++YQLLSSSDDG+CRIWDAR
Sbjct: 300 ASASNDFIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSSVYQLLSSSDDGSCRIWDAR 359
Query: 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTF 420
+SQ SPRIYLPKPPDA+ GK++VPS NG SSSNG QSHQILCCA+NA+GTVFVTGSSDTF
Sbjct: 360 FSQCSPRIYLPKPPDAVAGKNSVPSMNGTSSSNGPQSHQILCCAFNASGTVFVTGSSDTF 419
Query: 421 ARV---WSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477
ARV WSACKSS +DSEQP HE+DVLSGHENDVNYVQFS CA ASRS++SD FKEE++P
Sbjct: 420 ARVHQVWSACKSSTDDSEQPNHEIDVLSGHENDVNYVQFSACAGASRSSVSDTFKEESLP 479
Query: 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537
KFKNSWFCHDNIVTCSRDGSAIIWIPRSRR HGKVGRWTRAYHLKVPPPP+PPQPPRGGP
Sbjct: 480 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRYHGKVGRWTRAYHLKVPPPPMPPQPPRGGP 539
Query: 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHP 597
RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA DGSLVHSLTGHSAS+YVLDVHP
Sbjct: 540 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHSASTYVLDVHP 599
Query: 598 FNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLL 657
FNPRIAMSAGYDG+TIVWDIWEG PIR YEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLL
Sbjct: 600 FNPRIAMSAGYDGKTIVWDIWEGIPIRTYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLL 659
Query: 658 NTGQGESQKDAKYDQFFLGDYRPLIRDSLGNVLDQETQLVPHRRNIQDPLCDSSMIPYEE 717
NTGQGESQKDAKYDQFFLGDYRPLIRD++GNVLDQETQL PHRRNIQDPLCDSSMIPY E
Sbjct: 660 NTGQGESQKDAKYDQFFLGDYRPLIRDTIGNVLDQETQLAPHRRNIQDPLCDSSMIPYSE 719
Query: 718 PYQSMYQQRRLGALGIEWRPSSIKLAIGLDFSLGQDYAMPPLEDLERMMEPVPEFIDPVY 777
PYQ+MYQQRRLGALGIEW PSSI LA+G DFSLGQ+Y MPPL DL+R+MEP+PE +D VY
Sbjct: 720 PYQTMYQQRRLGALGIEWHPSSINLAVGPDFSLGQEYQMPPLADLDRVMEPLPELVDAVY 779
Query: 778 WEPENEVISDDNDSEYNIAEECASEAEQG---------------RDSEVEHSRKDGRRRS 822
WEPENEVISDD DSEYNIAEE +SE E G D++VEHS KDG RRS
Sbjct: 780 WEPENEVISDDTDSEYNIAEEYSSEGEHGSLSAASSFSDPECSAEDTDVEHSHKDGLRRS 839
Query: 823 TRRKHRAEVELKTSSGRRVRKRNLDERDGSASGSNRTKKSKNSQKALKKKSSKAKLLRPQ 882
R+K+R+EVE+ TSSGRRV++RNL+E DG++S S RTKKSKN +K K+ SSK + LRPQ
Sbjct: 840 RRKKYRSEVEIMTSSGRRVKRRNLNECDGTSSRS-RTKKSKNGRKVSKRNSSKIQSLRPQ 898
Query: 883 RVAARNARSMFSRITGTST-GEDDSDSEYNSSNSDTVLQDSHVQSKEDDRNLQNMQQQHK 941
R A RNA +MFS+IT TST G+D+ E +SS SD ++QDS++Q+ + DRNLQN+QQ+++
Sbjct: 899 RAAKRNALNMFSQITETSTEGDDEEGLEDDSSGSDPMIQDSNMQNTKSDRNLQNVQQKYQ 958
Query: 942 REEEQTIVESEFMGKPLELLESQSDTGNRKRLVLKLSLRDHKKALSLEDTRVKGDDMAKL 1001
R E+ ++ E E ++ ESQS+ GNR+RLVLK SLRD KK++ EDTR K + A +
Sbjct: 959 RGEQSSLNEFE---NAIKFPESQSNAGNRRRLVLKFSLRDSKKSIPSEDTRPKCNTQADI 1015
Query: 1002 PQSSSGPPQGTTERKIDLSLKEPGSSSAGSGIDVGLSQKHNRIVFADGSQDEKYDSQLEE 1061
S S PP T E K + E SS+ D+ SQ HNR F + E+ + L+
Sbjct: 1016 VHSPSRPPPKTVEEKETNLISEDPESSSMHAADLEQSQNHNRDDFIHKPRSEETEDHLDT 1075
Query: 1062 SAGDMENKTRWAEVKIRTSKRSSS-----SGVLLPPDANFDVHNDSIGDVNRCVKLENGH 1116
SAG +NK RW EVK R+SKR S S D +FDVHN + D+N K ENG
Sbjct: 1076 SAGYKDNKIRWGEVKARSSKRFRSGDFVASDACTGFDVSFDVHNGNGKDINGQTKPENGC 1135
Query: 1117 GKFSSNSETSCYG---CVRSCSDKEKFGSDALLDLASVRKEELARHEDIKKSSSFNSTPL 1173
G SS SE + + D E FG+ L + V+ ELA + KSSSF L
Sbjct: 1136 GN-SSPSEIQNHAGELLEKLGRDVEPFGT-GLENKDDVKNNELAPPGEANKSSSFQGLSL 1193
Query: 1174 VDHQQNDDV------------HKS--------------RNEDVGTNYRDELKENPP---L 1204
+D Q D HK +E VG N+ +LK NPP L
Sbjct: 1194 LDDHQKIDASAISSNGNLNKQHKGWSGSDEFRDCDSLEMDETVGINHSHDLKGNPPANSL 1253
Query: 1205 RVRIRTKGILRDTKSPSEQKSSTSVKDLPSAESDPIPMSESSLCMEGNLMSEVPEEAEGY 1264
++RIR+K I+RD PS+ K T ++ + D MS S ME N +SEVPEE +
Sbjct: 1254 KLRIRSKRIVRDPNFPSKLKFVTGTEEPSNIGGD--LMSRSHSRMEHNQISEVPEEDKVI 1311
Query: 1265 GRSSSDQLLNSNLKFKVRDG---SKSSYKTRTDIEAFDGGMEDGINHEA-----SGIDSP 1316
SS +S+ + D SY RT+ E + G ME+ ++ SGID
Sbjct: 1312 EMPSSPHRSHSDSDKQNYDAVHKRAKSYMARTNAEGYGGSMEESASNAGNYNYDSGIDFH 1371
Query: 1317 EAASGSIRKTRSMKMKIISREPIAANCNFKSKNGHDLVGTSKTVGNSSMEAHDEFFPEEW 1376
EA + ++ +TRSM S+EP FK + TSK N S + D+ EEW
Sbjct: 1372 EATTDAVHRTRSMVRDTTSQEPNNVMSRFKVRE-----ETSKNAENYSKKTRDQLQSEEW 1426
Query: 1377 IPTSTVKSRPRSTRNRRGDHDGHPCLLSGRKSNFPVRKLSWLMLSEHEEGYRYIPQLGDE 1436
+ +S ++ R RSTR RRGD+D + +GR SNF RK+SWLMLSEHEEGYRYIPQ GDE
Sbjct: 1427 MSSSRMRVRSRSTRYRRGDYDNYLSPSAGRISNFSGRKVSWLMLSEHEEGYRYIPQQGDE 1486
Query: 1437 VIYSRQGHQEFIESTG-SQEVGPWWSINGYISAVETCKVVNLVYATFPGSGDSCCKITLK 1495
V+Y RQGHQE+IE EVGPW S I AVE C V +LVYA+ GSGDSCCKITLK
Sbjct: 1487 VVYLRQGHQEYIEKLNLRSEVGPWRSPKTNIRAVEICSVEDLVYASLAGSGDSCCKITLK 1546
Query: 1496 FVDPSSSVLGKAFKLTLPELRDFPDFVVEKTLYDAAISRNWTHRDKCQIWWRNANGEGGT 1555
F DP SSV G+ FKLTLPEL +F DFVVEKT YDAAI RNWTHRDKC +WWRN GG+
Sbjct: 1547 FTDPLSSVFGRTFKLTLPELINFSDFVVEKTRYDAAIGRNWTHRDKCLVWWRNGEDGGGS 1606
Query: 1556 WWKGRITKSQAKSEEFPNSPWDRYMVEYK-TGDSHLHSPWEMHDPNVMWEHPEIDSESRD 1614
WW+GRI +AKS EFP+SPW+RY+V+YK +++LHSPWE+HDP++ WE P+ID E RD
Sbjct: 1607 WWEGRILAVEAKSREFPDSPWERYVVKYKGDAENNLHSPWELHDPDIQWEQPQIDFEIRD 1666
Query: 1615 KLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLE 1674
KLLSSF KLE S + QDYYGIQ+ N+ AQKLD+LNRFPVPLYPE+I+ RL NNYYR+LE
Sbjct: 1667 KLLSSFAKLE-SAHKIQDYYGIQKFNQVAQKLDFLNRFPVPLYPELIQARLENNYYRTLE 1725
Query: 1675 AAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNKL 1715
A K DI VMLSNA+SYF +NA LS+K++RL DWF RTL+KL
Sbjct: 1726 AVKHDIMVMLSNAQSYFGRNAELSSKMKRLSDWFTRTLSKL 1766
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431924|ref|XP_002277060.1| PREDICTED: uncharacterized protein LOC100248159 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1936 bits (5014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1042/1783 (58%), Positives = 1271/1783 (71%), Gaps = 95/1783 (5%)
Query: 1 MDYWKLSSSSGAPSLGKAPLKFSSTVQEMAQLEQQDMVANQVVEADVDLREVYFLIIHFL 60
M K S APS+ PL FSS VQE QL + + D+DLREVYFLI+HFL
Sbjct: 1 MALQKYIPSGDAPSVSMKPLSFSSKVQEKVQLADPEGSPTMDADVDIDLREVYFLIMHFL 60
Query: 61 SSGPCQRTLGLLWNELLEHQLLPRRYHAWFSRSGVNSGNDNDDGISFPLSYNKLVERYPH 120
S+GPC RT G WNELLEHQLLPRRYHAW+SRSG+ SG++NDDG SFPLSYNKLVERYPH
Sbjct: 61 SAGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLRSGDENDDGSSFPLSYNKLVERYPH 120
Query: 121 IEWDHLVKLLRQLLLYKASPFHGRIGGIAPNAADVPTLLGSGSFSLLECDRSMKYKQVKP 180
I DHLVKLL+QL+L P G I G PNAADVPTLLG+GSFSLL D + +V P
Sbjct: 121 IGKDHLVKLLKQLILSTTHPSQGMIRGNVPNAADVPTLLGTGSFSLLGNDMDKGHNEVNP 180
Query: 181 LPAYLRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLR 240
P ++RWPHMQADQV GLSLREIGGGF +H+RAPS+ +ACYA+AKPSTMVQKMQNIKKLR
Sbjct: 181 PPIHMRWPHMQADQVRGLSLREIGGGFTRHNRAPSIRAACYAVAKPSTMVQKMQNIKKLR 240
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV 300
GHR+AVYCAIFDR+GR+VITGSDDRLVKIWSMETA+CLASCRGHEGDITDLAVSSNN LV
Sbjct: 241 GHRNAVYCAIFDRTGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
Query: 301 ASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360
AS+SND +IRVWRLPDGLPISVLRGHTGAVTAIAFSPRPS++YQLLSSSDDGTCRIWDAR
Sbjct: 301 ASSSNDCIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSSVYQLLSSSDDGTCRIWDAR 360
Query: 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTF 420
YSQ+SPRIY+P+PPD+I GK+NV PSSSNG QSHQI CCA+NANGTVFVTGSSDT
Sbjct: 361 YSQFSPRIYVPRPPDSIAGKNNV-----PSSSNGPQSHQIFCCAFNANGTVFVTGSSDTL 415
Query: 421 AR------VWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEE 474
AR VW+ACKS+ ++S+QP HE+D+LSGHENDVNYVQFSGCAV+SR +++++ KEE
Sbjct: 416 ARVHLMISVWNACKSNPDESDQPNHEMDILSGHENDVNYVQFSGCAVSSRFSVAESSKEE 475
Query: 475 NVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534
NVPKFKNSWF HDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPP+PPQPPR
Sbjct: 476 NVPKFKNSWFTHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPPR 535
Query: 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLD 594
GGPRQR+LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH+ S+YVLD
Sbjct: 536 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHTESTYVLD 595
Query: 595 VHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQI 654
VHPFNPRIAMSAGYDG+TIVWDIWEGTPIRIY+ RFKLVDGKFSPDGTSI+LSDDVGQ+
Sbjct: 596 VHPFNPRIAMSAGYDGKTIVWDIWEGTPIRIYDTARFKLVDGKFSPDGTSIILSDDVGQL 655
Query: 655 YLLNTGQGESQKDAKYDQFFLGDYRPLIRDSLGNVLDQETQLVPHRRNIQDPLCDSSMIP 714
Y+L+TGQGESQKDA YDQFFLGDYRPLI+D+ GNVLDQETQL P+RRN+QD LCD++MIP
Sbjct: 656 YILSTGQGESQKDAMYDQFFLGDYRPLIQDTYGNVLDQETQLAPYRRNMQDLLCDATMIP 715
Query: 715 YEEPYQSMYQQRRLGALGIEWRPSSIKLAIGLDFSLGQDYAMPPLEDLERMMEPVPEFID 774
Y EPYQSMYQQRRLGALGIEWRPSS++LA+G DF+L QDY M PL DL+ +++P+PEFID
Sbjct: 716 YPEPYQSMYQQRRLGALGIEWRPSSLRLAVGPDFNLDQDYQMLPLPDLDVLIDPLPEFID 775
Query: 775 PVYWEPENEVISDDNDSEYNIAEECASEAEQG--------------RDSEVEHSRKDGRR 820
+ WEPENEV +DD DSEYN+ EE ++ EQG DS+VE+S KDG R
Sbjct: 776 VMDWEPENEVQTDDTDSEYNVTEEYSTGGEQGSLSSNSSGDPECSAEDSDVENSHKDGLR 835
Query: 821 RSTRRKHRAEVELKTSSGRRVRKRNLDERDGSASGSNRTKKSKNSQKALKKKSSKAKLLR 880
RS R+K +AE E+ T SGRRV++RNLDE DG++ SNRT+KS++ +K K SSK+K LR
Sbjct: 836 RSKRKKQKAETEIMTFSGRRVKRRNLDEFDGNSLRSNRTRKSRSGRKVSHKNSSKSKSLR 895
Query: 881 PQRVAARNARSMFSRITGTST-GEDDSDSEYNSSNSDTVLQDSHVQSKEDDRNLQNMQQQ 939
PQR AARNA ++FSR+ GTST GED+ SE + S S++ L+DS+++S E D +LQN Q +
Sbjct: 896 PQRAAARNALTLFSRMKGTSTDGEDEDGSEGDLSESESSLEDSNIESDESDGSLQNEQCK 955
Query: 940 HKREEEQTIVESEFMGKPLELLESQSDTGNRKRLVLKLSLRDHKKALSLEDTRVKGDDMA 999
H + +E ++ E E M K E ES + GNR+RLVLK +RD + L + ++ A
Sbjct: 956 HSKGKEVSLDEFEDMDKQHEHPESCMNAGNRRRLVLKFPIRDSNRLL------LAPENQA 1009
Query: 1000 KLPQSSSGPPQGTTE-RKIDLSLKEPGSSSAGSGIDVGLSQKHNRIVFADGSQDEKYDSQ 1058
L SSS PQ +E + LS ++ G SS+ + NRI + Q EK +
Sbjct: 1010 DLVGSSSKAPQEASEVNRNHLSSQDLGYSSSDANC--------NRIERRERGQPEKIEDH 1061
Query: 1059 LEESAGDMENKTRWAEVKIRTSKRSSSSGVLLPPDAN------FDVHNDSIGDVNRCVKL 1112
L+ G + K RW VK RTSKR +P D + D H+ + +N +
Sbjct: 1062 LDLFEGYKDGKIRWGGVKARTSKRLRVVEP-MPSDTDARSRQCIDGHDATENTINGFQEP 1120
Query: 1113 ENGHGKFSSNSETSCY---GCVRSCSDKEKFGSDAL--LDLASVRKEELARHEDIKKSSS 1167
E + + S +SE + + + + FG+ A+ LD S K +H + +
Sbjct: 1121 EKNYDRISPHSEIKYHVEETGKMAHMNGQHFGNGAVEGLDATSNGK----KHSSFNECMN 1176
Query: 1168 FNSTP-LVDHQQNDDVHKSRNEDVGTNYRDELKENPP--LRVRIRTKGILRDTKSPSEQK 1224
++ P V+ D S GT++ LKE+ ++RIR+K IL D + PS+ K
Sbjct: 1177 YDEPPKQVNMVAGDTAASSVQHSNGTDHPPHLKESSTSSTKLRIRSKKILEDPEIPSDPK 1236
Query: 1225 SSTSVKDLPSAESDPIPMSESSLCM-------------------EGNLMSEVPEEAEGYG 1265
+SV+D + D +SES L + G L SE E
Sbjct: 1237 IKSSVEDWSNGRCD--TLSESQLEIAEVPDCDDTDRPHSDHGDWNGLLKSEAAIEQNSRS 1294
Query: 1266 RSSSDQLLNSNLKFKVRDG-------SKSSYKTRTDIEAFDGGMEDGINHEA-SGIDSPE 1317
Q L S++ K+ + ++ + + + + NH SG+D E
Sbjct: 1295 VLQDSQGLYSHVNNKMYNAVYRRSRSYRTRTNSEGEGGGMEESTSNASNHNLDSGMDFHE 1354
Query: 1318 AASGSIRKTRSMKMKIISREPIAANCNFKSKNGHDLVGTSKTVGNSSMEAHDEFFPEEWI 1377
A + R+TRSM +K +R+P N K + GH T K+V S+ DE EEW+
Sbjct: 1355 ATTDGARRTRSMGLKATTRDPDVTCSNLKLRLGHGSEDTLKSVDKFSVNRSDELPCEEWM 1414
Query: 1378 PTSTVKSRPRSTRNRRGDH---DGHPCLLSGRKSNFPVRKLSWLMLSEHEEGYRYIPQLG 1434
+S + RS RNRR + D P + RK + +K+SWLMLS H E RYIPQLG
Sbjct: 1415 SSSRMTVGLRSARNRRASYHVRDTSPSPMERRKPHQSSKKVSWLMLSMHVEP-RYIPQLG 1473
Query: 1435 DEVIYSRQGHQEFIESTGSQEVGPWWSINGYISAVETCKVVNLVYATFPGSGDSCCKITL 1494
DEV+Y RQGHQE+I +GS E GPW S+ G I AVE CKV L Y+ F GSGDSCCK+TL
Sbjct: 1474 DEVVYLRQGHQEYITYSGSHEAGPWTSVKGIIRAVEFCKVEGLEYSPFAGSGDSCCKMTL 1533
Query: 1495 KFVDPSSSVLGKAFKLTLPELRDFPDFVVEKTLYDAAISRNWTHRDKCQIWWRNANGEGG 1554
+FVDP+S V GK FKLTLPE+ FPDF+VE+T YDAAI RNWT RDKC++WW+N E G
Sbjct: 1534 QFVDPTSHVFGKTFKLTLPEVTSFPDFLVERTRYDAAIQRNWTSRDKCRVWWKNEGEEDG 1593
Query: 1555 TWWKGRITKSQAKSEEFPNSPWDRYMVEYKT--GDSHLHSPWEMHDPNVMWEHPEIDSES 1612
+WW GRI +A+S EFP+SPWDRY++ Y++ ++HLHSPWE++D WE P ID ES
Sbjct: 1594 SWWDGRILSVKARSPEFPDSPWDRYVIRYRSEPTETHLHSPWELYDIGTQWEQPHIDDES 1653
Query: 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRS 1672
R+KLLSS KLEQS + QDYYGIQ+L + +QK ++LNRFPVPL EVI+ RL N YYRS
Sbjct: 1654 RNKLLSSLAKLEQSGDKPQDYYGIQKLKQVSQKSNFLNRFPVPLSLEVIQSRLKNQYYRS 1713
Query: 1673 LEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNKL 1715
+EA K D+ VMLSNAE+YF+KNA LS KV RL +WF R L+ +
Sbjct: 1714 MEAVKHDVKVMLSNAETYFVKNAELSMKVRRLSEWFTRMLSSI 1756
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501869|ref|XP_003519746.1| PREDICTED: uncharacterized protein LOC100796497 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1794 bits (4647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 995/1730 (57%), Positives = 1190/1730 (68%), Gaps = 108/1730 (6%)
Query: 43 VEADVDLREVYFLIIHFLSSGPCQRTLGLLWNELLEHQLLPRRYHAWFSRSGVNSGNDND 102
+ D+DLRE+YFLI+HFLS GPC RT ELLEHQLLPRRYHAWFSRSG SG+D D
Sbjct: 41 TDVDIDLREIYFLIMHFLSVGPCHRTFLNFKEELLEHQLLPRRYHAWFSRSGEPSGDDAD 100
Query: 103 D---GISFPLSYNKLVERYPHIEWDHLVKLLRQLLLYKASPFHGRIGGIAPNAADVPTLL 159
+ GIS PL Y+ LV RYPHI DHLVKLL+QL+L +P HG++ G +PNAADVPTLL
Sbjct: 101 EDDDGISLPLDYSNLVGRYPHITKDHLVKLLKQLMLSTVNPLHGKLEGSSPNAADVPTLL 160
Query: 160 GSGSFSLLECDRSMKYKQVKPLPAYLRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCSA 219
G GSFSLL DR K VKP P Y+RWPHM+A+QV GLSLREIGGGF KHHR+PS+ SA
Sbjct: 161 GYGSFSLLNVDRKTADKLVKPPPLYMRWPHMKANQVQGLSLREIGGGFTKHHRSPSIRSA 220
Query: 220 CYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLA 279
CYAIAKPSTMVQKMQNIKKLRGHR AVYCAIFD SGR+VI+GSDDRLVKIWSMETAFCLA
Sbjct: 221 CYAIAKPSTMVQKMQNIKKLRGHRVAVYCAIFDGSGRYVISGSDDRLVKIWSMETAFCLA 280
Query: 280 SCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRP 339
SCRGHEGDITDLAVSSNN LVASASNDFVIRVWRLPDG+PISVLRGHTGAV I FSP
Sbjct: 281 SCRGHEGDITDLAVSSNNALVASASNDFVIRVWRLPDGMPISVLRGHTGAVNTITFSP-- 338
Query: 340 SAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399
S IYQLLSSSDDGTCRIWDAR S ++PRIY+P+PPDAI GK N P + PSSSN QS+Q
Sbjct: 339 SVIYQLLSSSDDGTCRIWDARNS-HNPRIYVPRPPDAINGKGNAPPASLPSSSNVQQSYQ 397
Query: 400 ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGC 459
+LCCAYNANGTVFVTGSSDT+ARVWSA K + +D+EQPIHE+D+LSGHENDVNYVQFSGC
Sbjct: 398 VLCCAYNANGTVFVTGSSDTYARVWSALKPNTDDAEQPIHEMDLLSGHENDVNYVQFSGC 457
Query: 460 AVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAY 519
+VAS+ SD +KEEN KF+N W+CHDNIVTCSRDGSAIIW+PRSR+SHGKVGRWTRAY
Sbjct: 458 SVASKILTSDPWKEENTLKFRNFWYCHDNIVTCSRDGSAIIWVPRSRKSHGKVGRWTRAY 517
Query: 520 HLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL 579
HLKVPPPPLPPQPPRGGPRQR LPTPRGVNMI+WSLDNRFVLAAIMDCRICVWNAVDGSL
Sbjct: 518 HLKVPPPPLPPQPPRGGPRQRFLPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNAVDGSL 577
Query: 580 VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFS 639
VHSLTGH+ SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG PIR YEIGRFKLVDGKFS
Sbjct: 578 VHSLTGHTESSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGIPIRTYEIGRFKLVDGKFS 637
Query: 640 PDGTSIVLSDDVGQIYLLNTGQGESQKDAKYDQFFLGDYRPLIRDSLGNVLDQETQLVPH 699
PDGTSIVLSDDVGQIY LNTGQGESQKDAKYDQFFLGDYRPLI+D+ G VLDQETQL PH
Sbjct: 638 PDGTSIVLSDDVGQIYFLNTGQGESQKDAKYDQFFLGDYRPLIQDTQGYVLDQETQLPPH 697
Query: 700 RRNIQDPLCDSSMIPYEEPYQSMYQQRRLGALGIEWRPSSIKLAIGLDFSLGQDYAMPPL 759
RRNIQ+PLCDSSM+PY EPYQS +QQRRLGALGIEWRPS IK A+G DF++GQDY + PL
Sbjct: 698 RRNIQEPLCDSSMLPYPEPYQSQFQQRRLGALGIEWRPSLIKYAVGPDFTVGQDYPVVPL 757
Query: 760 EDLERMMEPVPEFIDPVYWEPENEVI-SDDNDSEYNIAEECASEAEQGR---DSEVEHS- 814
DLE M+EP PEF+D ++WEPE ++I SDD DSEYN E+ +S A QG S++E+S
Sbjct: 758 VDLEVMVEPQPEFLDAMFWEPEYDIIVSDDADSEYNANEDSSSAAGQGSVISSSDLEYSD 817
Query: 815 ---RKDGRRRSTRRKHRAEVELKTSSGRRVRKRNLDERDGSASGSNRTKKSKNSQKALKK 871
+DG RRS R+KH + TSSGRRVRKRNLDE +G+ SGSNR +K K
Sbjct: 818 DSSNRDGLRRSRRKKH----NVMTSSGRRVRKRNLDECNGNTSGSNRLRKKSKGSSKASK 873
Query: 872 KSSK-AKLLRPQRVAARNARSMFSRITGTSTGEDDSDSEYNSSNSDTVLQDSHVQSKEDD 930
+ S AK LRPQR+AA NARSMFS+I TST +D+DS+ +S+S QD S+ +
Sbjct: 874 RKSSIAKTLRPQRIAAHNARSMFSQIDETSTDGEDNDSDEEASDS---FQDPDDLSESE- 929
Query: 931 RNLQNMQQQHKREEEQTIVESEFMGKPLELLESQSDTGNRKRLVLKLSLRDHKKALSLED 990
+ M +H ++ + + + KP ES + R RLV+K SLRD KK + ED
Sbjct: 930 ---REMDNKHLEIKKPLLEKFATVSKPPAFSESLVNVETRPRLVVKFSLRDSKKNVPTED 986
Query: 991 TRVKGDDMAKLPQSSSGPPQGTTERKI--DLSLKEPGSSSAGSGIDVGLSQKHNRIVFAD 1048
TR+ + + SS P +++K D +P SS + L Q N D
Sbjct: 987 TRLACETQDNMVSQSSRPQPEESDQKTFPDTKSLDPALSSM-VATNAELPQSLNGNENDD 1045
Query: 1049 GSQDEKYDSQLEESAGDMENKTRWAEVKIRTSKRSSSSGVLLPPDANFDVHNDSIGDVNR 1108
Q E + L N + ++K T + S S LL D D + + N
Sbjct: 1046 KEQTENATNNLYAFRYVEANTDQCRKMKTHTHELSRSGDALLT-----DAEIDDLLEHN- 1099
Query: 1109 CVKLENGHGKFSSNSETSCYGCVRSCSDKEKFGSDALLDLASVRKEELARHEDIKKSSSF 1168
NG+ K N +R + G L + S+ EL ED K SS
Sbjct: 1100 ----ANGYVKPEMN--------LRKRRSEHVIGK--LETVGSMVNTELTDFEDAPKFSSL 1145
Query: 1169 NSTPLVDHQQNDDVHKS-------------------------RNEDVGTNYRDELKENPP 1203
+ + Q N D + NE V +++ +LK P
Sbjct: 1146 EPSLFGNPQPNADGSLTSGYDKFNEGDKGQSGSDKCAEDTLENNEVVHSSHCHDLKMKAP 1205
Query: 1204 LR---VRIRTKGILRDTKSPSEQKSSTSVKDLPSAESDPIPMSESSLCMEGNLMSEVPEE 1260
++ + I+ K I DT+ P + K +S D A I +SE+S M NL++EVPE
Sbjct: 1206 VKSTKLVIKKKQISADTEGPCKLKIVSSKADSSCARG--IGISENSSSMGPNLVTEVPE- 1262
Query: 1261 AEGYGRSSSDQLLNSNL------KFKVRDGSKSSYKTRTDIEAFDGGMEDGI----NHEA 1310
E + SS QLL+S F RD S + E+FD M + N
Sbjct: 1263 GEDDRKFSSPQLLHSYSDKRSYDHFHKRDKSYKGKVNQDGFESFDCDMGEHTSVFSNQHG 1322
Query: 1311 SGIDSPEAASGSIRKTRSMKMKIISREPIAANCNFKSKNGHDLVGTSKTVGNSSMEAHDE 1370
GI + S +R+TR ++MK S EP +N K + G G S +SS D+
Sbjct: 1323 LGIGLSDVTSDPMRQTRFIRMKTTSEEPSTSNRRIKIRQGQSSRGKSDR-EDSSTRMSDQ 1381
Query: 1371 FFPEEWIPTSTVKSRPRSTRNRRGDHDGHPC-LLSGRKSNFPVRKLSWLMLSEHEEGYRY 1429
+ R R+ R+R G++ + L+ R SN V+KLSWLMLSE EEGYRY
Sbjct: 1382 -----------LHRRIRTARHRNGEYIANDSGTLTRRVSNHHVKKLSWLMLSEPEEGYRY 1430
Query: 1430 IPQLGDEVIYSRQGHQEFIESTGSQEVGPWWSINGYISAVETCKVVNLVYATFPGSGDSC 1489
IPQLGDEV+Y RQGHQE+I+S E GPW S G + A E CKV L YA PGSGDSC
Sbjct: 1431 IPQLGDEVVYLRQGHQEYIKSYSLSESGPWRSFTG-LGASEICKVEELEYAELPGSGDSC 1489
Query: 1490 CKITLKFVDPSSSVLGKAFKLTLPELRDFPDFVVEKTLYDAAISRNWTHRDKCQIWWRNA 1549
CK+ L+F+DPSS V GK+FKLTLPEL +F DFV+EKT YD A+ RNW+ RDKC +WWRN
Sbjct: 1490 CKLKLRFLDPSSCVHGKSFKLTLPELINFTDFVIEKTWYDTAMKRNWSSRDKCMVWWRNE 1549
Query: 1550 NGEGGTWWKGRITKSQAKSEEFPNSPWDRYMVEYKT--GDSHLHSPWEMHDPNVMWEHPE 1607
+G+GG+WW GRI + QAKS++FP SPW+RY V+YKT ++HLHSPWE++D ++WEHP
Sbjct: 1550 DGKGGSWWDGRIIQVQAKSDDFPESPWERYRVQYKTDPTENHLHSPWELYDSEMLWEHPH 1609
Query: 1608 IDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVN 1667
ID E RDKLLS F KL++ VSR ++ + IQ LN+ A+KL++ NRFP P YPE+I+ RL N
Sbjct: 1610 IDHEIRDKLLSYFTKLDRRVSRYEERFDIQALNQVAEKLEFANRFPAPFYPELIQSRLKN 1669
Query: 1668 NYYRSLEAAKDDINVMLSNAESYF--IKNAALSAKVERLRDWFNRTLNKL 1715
+YYRS+E DI +MLSNAE YF KN L K+ R+ +WF R L ++
Sbjct: 1670 DYYRSVEGVNHDIMIMLSNAEEYFKITKNVQLVGKIRRISEWFRRKLERI 1719
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536691|ref|XP_003536869.1| PREDICTED: uncharacterized protein LOC100784354 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1785 bits (4624), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1021/1775 (57%), Positives = 1207/1775 (68%), Gaps = 140/1775 (7%)
Query: 1 MDYWKLSSSSGAPSLGKAPLKFSSTVQEMAQLEQQDMVANQVVEADVDLREVYFLIIHFL 60
MD K +S A SL APL S+ V +M + + D+DLRE+YFLI+HFL
Sbjct: 1 MDSRKGKASVHASSLSVAPLSVSNKVDQMVSPPRHLRAVE--TDVDIDLREIYFLIMHFL 58
Query: 61 SSGPCQRTLGLLWNELLEHQLLPRRYHAWFSRSG---VNSGNDNDDGISFPLSYNKLVER 117
S GPC+RT ELLEHQLLPRRYHAWFSRSG V+ D DDGIS PL Y+ LV R
Sbjct: 59 SVGPCRRTFLNFKEELLEHQLLPRRYHAWFSRSGEPRVDDA-DEDDGISLPLDYSNLVGR 117
Query: 118 YPHIEWDHLVKLLRQLLLYKASPFHGRIGGIAPNAADVPTLLGSGSFSLLECDRSMKYKQ 177
YPHI DHLVKLL+QL+L P HG++ G +PNAADVPTLLG GSFSLL+ DR K
Sbjct: 118 YPHITKDHLVKLLKQLMLSTVHPLHGKLEGSSPNAADVPTLLGYGSFSLLDIDRKTADKL 177
Query: 178 VKPLPAYLRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIK 237
VKP Y+RWPHM+A+QV GLSLRE GGGF KHHRAPS+ SACYAIAKPSTMVQKMQNIK
Sbjct: 178 VKPPLLYMRWPHMKANQVQGLSLRETGGGFAKHHRAPSIRSACYAIAKPSTMVQKMQNIK 237
Query: 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNN 297
KLRGHR AVYCAIFD SGR+VI+GSDDRLVKIW METAFCLASCRGHEGDITDLAVSSNN
Sbjct: 238 KLRGHRVAVYCAIFDGSGRYVISGSDDRLVKIWYMETAFCLASCRGHEGDITDLAVSSNN 297
Query: 298 TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357
LVASASNDFVIRVWRLPDG+PISVLRGHTGAV I FS PS IYQLLSSSDDGTCRIW
Sbjct: 298 ALVASASNDFVIRVWRLPDGMPISVLRGHTGAVNTITFS--PSVIYQLLSSSDDGTCRIW 355
Query: 358 DARYSQYSPRIYLPKPPDAITGKSN-VPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS 416
DAR S ++PRIY+P+P DAI GKSN P++ SSSNG QS+Q+LCCAYNANGTVFVTGS
Sbjct: 356 DARNS-HNPRIYVPRPLDAINGKSNAPPASLPSSSSNGQQSYQVLCCAYNANGTVFVTGS 414
Query: 417 SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476
SDT+ARVWSA K + +DSEQPIHE+D+LSGHENDVNYVQFSGC+VAS+ SD +KEEN
Sbjct: 415 SDTYARVWSALKPNTDDSEQPIHEMDLLSGHENDVNYVQFSGCSVASKILTSDPWKEENT 474
Query: 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536
KF+N W+CHDNIVTCSRDGSAIIW+PRSR+SHGKVGRWTRAYHLKVPPPPLPPQPPRGG
Sbjct: 475 LKFRNFWYCHDNIVTCSRDGSAIIWVPRSRKSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 534
Query: 537 PRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVH 596
PRQR LPTPRGVNMI+WSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH+ SSYVLDVH
Sbjct: 535 PRQRFLPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHTESSYVLDVH 594
Query: 597 PFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYL 656
PFNPRIAMSAGYDGRTIVWDIWEG PIR YEIG FKLVDGKFSPDGTSIVLSDDVGQIY
Sbjct: 595 PFNPRIAMSAGYDGRTIVWDIWEGIPIRTYEIGHFKLVDGKFSPDGTSIVLSDDVGQIYF 654
Query: 657 LNTGQGESQKDAKYDQFFLGDYRPLIRDSLGNVLDQETQLVPHRRNIQDPLCDSSMIPYE 716
LNTGQGESQKDAKYDQFFLGDYRPLI+D+ GNVLDQETQL PHRRNIQ+PLCDSSM+PY
Sbjct: 655 LNTGQGESQKDAKYDQFFLGDYRPLIQDTQGNVLDQETQLPPHRRNIQEPLCDSSMMPYP 714
Query: 717 EPYQSMYQQRRLGALGIEWRPSSIKLAIGLDFSLGQDYAMPPLEDLERMMEPVPEFIDPV 776
EPYQS +QQRRLGALGIEWRPS IK A+G DFS+GQDY + PL DLE M+EP PEF+D +
Sbjct: 715 EPYQSQFQQRRLGALGIEWRPSLIKYAVGPDFSVGQDYPVVPLVDLEGMVEPQPEFLDAM 774
Query: 777 YWEPENEVI-SDDNDSEYNIAEECASEAEQG--------RDSEVEHSRKDGRRRSTRRKH 827
+WEPE ++I SDDNDSEYN+ E+ +S A QG SE + S +DG RRS R+KH
Sbjct: 775 FWEPEYDIIVSDDNDSEYNVNEDSSSAAGQGSVISSSDLEYSEDDSSNRDGLRRSRRKKH 834
Query: 828 RAEVELKTSSGRRVRKRNLDERDGSASGSNRTK-KSKNSQKALKKKSSKAKLLRPQRVAA 886
+ TSSGR VRKRNLDE +G+ SGSNR + KSK S K K+KSSKAK LRPQR+AA
Sbjct: 835 ----NVMTSSGRCVRKRNLDECNGNTSGSNRLRKKSKGSSKPSKRKSSKAKTLRPQRIAA 890
Query: 887 RNARSMFSRITGTSTGEDDSDSEYNSSNSDTVLQDSHVQSKEDDRNLQNMQQQHKREEEQ 946
NARSMFS+I ST +D+DS+ +S+S QD DD + M+ +K E +
Sbjct: 891 HNARSMFSQIDEASTDGEDNDSDEEASDS---FQDP------DDLSEPEMEMNNKHVELK 941
Query: 947 TIVESEF--MGKPLELLESQSDTGNRKRLVLKLSLRDHKKALSLEDTRVKGDDMAKLPQS 1004
+ +F + KP ESQ++ R RLV+K SLRD KK + EDTR+ + +
Sbjct: 942 IPLLEKFATVSKPPAFCESQANVETRPRLVVKFSLRDSKKNVPTEDTRLACETQDNMVCQ 1001
Query: 1005 SSGPPQGTTERKI--DLSLKEPGSSSAGSGIDVGLSQKHNRIVFADGSQDEKYDSQLEES 1062
S P +++K D +P SS + + L Q +R D Q E + L+ S
Sbjct: 1002 SFRPQPEESDQKTFPDTKSLDPALSSMAAP-NAKLPQSLDRNENDDKEQTENITNNLDAS 1060
Query: 1063 AGDMENKTRWAEVKIRTSKRSSSSGVLLPPDANFDVHNDSIGDVNRCVKLENGHGKFSSN 1122
N + ++K T + S S LL DA D H + + N VK E K S
Sbjct: 1061 RYVEANTDQCRKMKTHTHELSRSGDALL-TDAEIDDHLEQ--NANGYVKPEMNLTKRRS- 1116
Query: 1123 SETSCYGCVRSCSDKEKFGSDALLDLASVRKEELARHEDIKKSSSFNSTPLVDHQQN--- 1179
++ G L + S+ EL ED K SS + + Q N
Sbjct: 1117 --------------EQVIGK--LETVGSMVNTELTDFEDAPKFSSLEPSLFCNPQPNAEG 1160
Query: 1180 ------DDVHKS----------------RNEDVGTNYRDELKENPPL---RVRIRTKGIL 1214
D H NE V +++ LK P+ ++ I+ K I
Sbjct: 1161 SLTSGYDKFHGGDKGQSGSEKCAEDSLENNEVVQSSHCRNLKMKAPVKSTKLVIKKKQIS 1220
Query: 1215 RDTKSPSEQKSSTSVKDLPSAESDPIPMSESSLCMEGNLMSEVPEEAEGYGRSSSDQLLN 1274
DT+ + K +S D A I +S SS M NL++EVP E E + SS QLL+
Sbjct: 1221 PDTEGSCKLKIVSSKADSTGARG--IVISGSSSFMGPNLVTEVP-EGEDDRKFSSPQLLH 1277
Query: 1275 SNLKFKVRD---GSKSSYKTRTD---IEAFDGGMEDGI----NHEASGIDSPEAASGSIR 1324
S + D SYK + + E+FD E+ N GI + S +R
Sbjct: 1278 SYSDKRSYDHVHKRDKSYKGKVNQDGFESFDCDTEEHTSVFSNPHGLGIGLFDVTSDPMR 1337
Query: 1325 KTRSMKMKIISREPIAANCNFKSKNGHDLVGTSKTVGNSSMEAHDEFFPEEWIPTSTVKS 1384
+TRS++MK S EP +N K + G G PEE + S +
Sbjct: 1338 QTRSIRMKTTSEEPSTSNRRIKIRQGQSSRGK----------------PEEGVNDSGTST 1381
Query: 1385 RPRSTRNRRGDHDGHPCLLSGRKSNFPVRKLSWLMLSEHEEGYRYIPQLGDEVIYSRQGH 1444
R R SN V+KLSWLMLSE EEGYRYIPQLGDEV+Y RQGH
Sbjct: 1382 R--------------------RVSNHHVKKLSWLMLSELEEGYRYIPQLGDEVVYFRQGH 1421
Query: 1445 QEFIESTGSQEVGPWWSINGYISAVETCKVVNLVYATFPGSGDSCCKITLKFVDPSSSVL 1504
QE+IES E GPW G + A E CKV L YA PGSGDSCCK+ L+FVDPSS V
Sbjct: 1422 QEYIESYSLSESGPWRLFVG-LGASEICKVEELEYAELPGSGDSCCKLKLRFVDPSSCVH 1480
Query: 1505 GKAFKLTLPELRDFPDFVVEKTLYDAAISRNWTHRDKCQIWWRNANGEGGTWWKGRITKS 1564
GK+FKLTLPEL +F DFV+EKT YD A+ RNW+ RDKC +WWRN +G+GG+WW GRI +
Sbjct: 1481 GKSFKLTLPELINFTDFVIEKTWYDTAMKRNWSSRDKCMVWWRNEDGKGGSWWDGRIIQV 1540
Query: 1565 QAKSEEFPNSPWDRYMVEYKT--GDSHLHSPWEMHDPNVMWEHPEIDSESRDKLLSSFNK 1622
QAKS++FPNSPW+RY V+YKT ++HLHSPWE++DP ++WEHP ID E RDKLLS F K
Sbjct: 1541 QAKSDDFPNSPWERYRVQYKTDPSENHLHSPWELYDPEMLWEHPHIDHEIRDKLLSYFIK 1600
Query: 1623 LEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINV 1682
L+ VSR + + IQ LN+ A++L++ NRFP P YPE+I+ RL N+YYRS+E K DI V
Sbjct: 1601 LDHRVSRYEQRFDIQALNQVAERLEFANRFPAPFYPELIQSRLKNDYYRSVEGVKHDIMV 1660
Query: 1683 MLSNAESYF--IKNAALSAKVERLRDWFNRTLNKL 1715
MLSNAE YF KNA L +K+ R+ +WF R L ++
Sbjct: 1661 MLSNAEEYFKITKNAQLVSKIRRISEWFRRKLERI 1695
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433431|ref|XP_004134501.1| PREDICTED: uncharacterized protein LOC101214610 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1712 bits (4434), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 951/1783 (53%), Positives = 1200/1783 (67%), Gaps = 143/1783 (8%)
Query: 12 APSLGKAPLKFSSTVQEMAQLEQQDMVANQVVEADVDL--REVYFLIIHFLSSGPCQRTL 69
PS+ F + E Q E+ + N+ +E DV++ REVYFLI+HFLSSGPC RT
Sbjct: 11 TPSINLKHSSFPIKLHEQTQFEEPE--TNRTLEPDVEIDPREVYFLIMHFLSSGPCLRTC 68
Query: 70 GLLWNELLEHQLLPRRYHAWFSRSGVNSGNDNDDGISFPLSYNKLVERYPHIEWDHLVKL 129
GLLW+EL EHQLLPRRYHAW+SR+GV+SG++NDDG+SFPLSY LVERYPH++ +HL+KL
Sbjct: 69 GLLWDELFEHQLLPRRYHAWYSRNGVHSGHENDDGLSFPLSYQHLVERYPHVDKNHLIKL 128
Query: 130 LRQLLLYKASPFHGRIGGIAPNAADVPTLLGSGSFSLLECDRSMKYKQVKPLPAYLRWPH 189
L+QL+L KA P G GGIAPNAADVPTLLG+G+FSLL D+ + PA++RWPH
Sbjct: 129 LKQLILNKAPPSRGMSGGIAPNAADVPTLLGTGTFSLLSYDKHEGVSKPSGPPAHMRWPH 188
Query: 190 MQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCA 249
M+AD V GLSLREIGGGF +H RAPSV +ACYAIAKPSTMVQKMQNIK+LRGHR+AVYCA
Sbjct: 189 MKADSVRGLSLREIGGGFSRHQRAPSVRAACYAIAKPSTMVQKMQNIKRLRGHRNAVYCA 248
Query: 250 IFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVI 309
IFDR+GR+VITGSDDRLVKIWSMETA+CLASCRGHEGDITDLAVSSNN +VAS+SNDFVI
Sbjct: 249 IFDRAGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAVVASSSNDFVI 308
Query: 310 RVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS-QYSPRI 368
RVWRLPDGLPISVLRGHTGAVTAIAFSPR A YQLLSSSDDGTCRIWDAR S Q +PRI
Sbjct: 309 RVWRLPDGLPISVLRGHTGAVTAIAFSPR--AAYQLLSSSDDGTCRIWDARSSSQSAPRI 366
Query: 369 YLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACK 428
Y+PKP D++TG + N G S S QSHQI CCA+NA GT+FVTGSSDT ARVWSACK
Sbjct: 367 YVPKPLDSVTGWL-ISRNGGSSVSTLPQSHQIFCCAFNACGTIFVTGSSDTLARVWSACK 425
Query: 429 SSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN 488
+ ++ +QP HE+DVL+GHENDVNYVQFSGCAVASR +D KE+NV KFKNSWF +DN
Sbjct: 426 GNNDNPDQPNHEIDVLAGHENDVNYVQFSGCAVASRFTTTDVAKEDNVHKFKNSWFTYDN 485
Query: 489 IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548
IVTCSRDGSAIIW+PRSRRSHGKVGRWTRAYHLKVPPPP+PPQP RGGPRQR+LPTPRGV
Sbjct: 486 IVTCSRDGSAIIWVPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPARGGPRQRILPTPRGV 545
Query: 549 NMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGY 608
NMI+WSLDNRFVLAAIMDCRICVWNA DGSLVHSLTGH+ S+YVLDVHPFNPRIAMSAGY
Sbjct: 546 NMIIWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY 605
Query: 609 DGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDA 668
DG+TIVWDIWEGTPIRIYEI FKLVDGKFS DGTSI+LSDDVGQ+Y+L+TGQGESQ+DA
Sbjct: 606 DGKTIVWDIWEGTPIRIYEISHFKLVDGKFSSDGTSIILSDDVGQLYILSTGQGESQQDA 665
Query: 669 KYDQFFLGDYRPLIRDSLGNVLDQETQLVPHRRNIQDPLCDSSMIPYEEPYQSMYQQRRL 728
KYDQFFLGDYRPLI+D GNV+DQETQL +RRN+QD L DS MIPY EPYQ+ YQQRRL
Sbjct: 666 KYDQFFLGDYRPLIQDPSGNVIDQETQLSTYRRNLQDLLSDSGMIPYPEPYQTAYQQRRL 725
Query: 729 GALGIEWRPSSIKLAIGLDFSLGQDYAMPPLEDLERMMEPVPEFIDPVYWEPENEVISDD 788
GA+ +EWRPSS+KL++G DF+L DY + PL DL+ ++EP+P+ +D + W PENEV S+D
Sbjct: 726 GAMSVEWRPSSLKLSVGPDFNLDPDYQLLPLADLDMLVEPLPDIVDAMDWGPENEVQSED 785
Query: 789 NDSEYNIAEECASEAEQ--------------GRDSEVEHSRKDGRRRSTRRKHRAEVELK 834
DSEYN+ E+ ++ EQ D+ ++ + DG RRS R+K +A++E+
Sbjct: 786 TDSEYNVTEDYSTGGEQRSLNSNCSTDPECSSEDTGIDDAPADGLRRSKRKKQKADMEVM 845
Query: 835 TSSGRRVRKRNLDERDGSASGSNRTKKSKNSQKALKKKSSKAKLLRPQRVAARNARSMFS 894
TSSGRRV++RN+DE +G A S+R +KSK S KK S +K LRPQR AARNAR+ S
Sbjct: 846 TSSGRRVKRRNMDEYEGDAIRSSRNRKSK-SGHKPSKKKSASKSLRPQRAAARNARNWIS 904
Query: 895 RITGTST-GEDDSDSEYNSSNSDTVLQDSHVQSKEDDRNLQNMQQQHKREEEQTIVESEF 953
G ST GE++ +S + S S++ L+DS ++S E +R+LQN + +H + +E + +E
Sbjct: 905 SFKGKSTDGEEEYESGGDCSESESTLEDSDIESDEYERSLQN-RIKHSKGKEVFLYGAEE 963
Query: 954 MGKPLELLESQSDTGNRKRLVLKLSLRDHKKALSLEDTRVKGDDMAKLPQSSSGPPQGTT 1013
+ K L++ ES+ D GNRK+L++K S+++ K T + + A + SSS P+
Sbjct: 964 ITKSLDVPESRVDAGNRKKLIVKFSVKNLNKGDPPLSTALSCSNTADVASSSSRSPKEVI 1023
Query: 1014 ERKIDLSLKEPGSSSAGSGIDVGLSQKHNRIVFADGSQD--EKYDSQLEESAGDMENKTR 1071
E +L E + V DG+ D E Y R
Sbjct: 1024 ETSQNLVRSE------------------RQFVNIDGNSDLTEVY----------TNGNIR 1055
Query: 1072 WAEVKIRTSKRSSSSGVLLPPDA--------NFDVHNDSIGDVNRCVKLENGHGKFSSNS 1123
W ++R+SKR G +P DA N D HN++ V+ ++ EN G S ++
Sbjct: 1056 WGGSRVRSSKR-IRFGDTMPSDAYAVSSSLPNGD-HNENENAVHEYLERENHFGAPSPHA 1113
Query: 1124 ETSCYGCVRSCSDKEKFGSDALL----DLASVRKEELARHEDIKKSSSFNSTPLVDHQQN 1179
+ V CSD+ S L D AS +E+ ++K ++ DH +
Sbjct: 1114 KV-----VNFCSDEMDTVSPTKLKEEDDNASGHSQEMVNGGELK---CVGNSKSCDHDDS 1165
Query: 1180 DDVHKSRNEDV------GTNYRDELKENPPLRVRIRTKGILRDTKSPSEQKSSTSVKDLP 1233
+++ ++ GT+ ++ + P+R +IR K I D + + K +
Sbjct: 1166 NNLIMFSSDATTTSIQNGTHAPEQTENTAPMRKKIRFKSISLDPEHSLKHKIES------ 1219
Query: 1234 SAESDPIPMSESSLCMEGNLMSEVPEEAEGYGRSSSDQLLN-------SNLKFKVRDGSK 1286
+ ESS E N +S P+ G S +++ + ++ V +
Sbjct: 1220 --------LDESSKNDEYNTVSGSPQHPNGLKDSVTNETYSDLRNNCPEDMDIAVDEKPV 1271
Query: 1287 SSYKTRTDIEAFDGG-MEDGI------NHEASGIDSPEAASGS----------------- 1322
S+ ++++A + M + N S IDS ASG
Sbjct: 1272 STLCNSSELQAVETNKMYTAVYTRSKSNKGKSNIDSNGCASGEHALGNSSLPADADSHKI 1331
Query: 1323 -IRKTRSMKMKIISREPIAANCNFKSKNGHDLVGTSKTVGNSSMEAHDEFFPEEWIPTST 1381
+RK RS++ K S + + KS +L S+ GNSS + EEW +S
Sbjct: 1332 MLRKARSIRFKESSYDLNNVGDDLKSDEDQELEQKSRRSGNSSAD-RSHIPSEEWGSSSR 1390
Query: 1382 VKSRPRSTRNRRGD--HDGHPCLLSGRKSNFPVRKLSWLMLSEHEEGYRYIPQLGDEVIY 1439
+ RSTRNRRG D +P + RKS RK SWLM+ HE G RYIPQLGDEV Y
Sbjct: 1391 MTVGSRSTRNRRGTLIQDINP--VDRRKSVQYARKGSWLMMPAHEGGSRYIPQLGDEVAY 1448
Query: 1440 SRQGHQEFIESTGS-----QEVGPWWSINGYISAVETCKVVNLVYATFPGSGDSCCKITL 1494
RQGHQE+I+ + +++GPW S G I AVE CKVV LVY+T GSGDSCCK+ L
Sbjct: 1449 LRQGHQEYIQHCCANYCHIKDMGPWTSNRGTIRAVEFCKVVELVYSTSAGSGDSCCKMLL 1508
Query: 1495 KFVDPSSSVLGKAFKLTLPELRDFPDFVVEKTLYDAAISRNWTHRDKCQIWWRNANGEGG 1554
KF+DPSS V ++FKLTLPEL FPDF+VEK+ ++AA+ RNWT RDKC++WW+N G G
Sbjct: 1509 KFIDPSSQVYLQSFKLTLPELTSFPDFLVEKSRFEAAMQRNWTFRDKCKVWWKNDVGVDG 1568
Query: 1555 TWWKGRITKSQAKSEEFPNSPWDRYMVEYKT--GDSHLHSPWEMHDPNVMWEHPEIDSES 1612
+WW GRI QAKS EFP SPW+RY + Y++ + HLHSPWE++D + WE P ID E+
Sbjct: 1569 SWWDGRIISVQAKSSEFPESPWERYTIRYRSDPAEPHLHSPWELYDTIIQWEQPRIDDET 1628
Query: 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRS 1672
+ KLL + +KL Q +GIQ L ++K Y NRFPVPL E+I+ RL N+YYRS
Sbjct: 1629 KSKLLMAIDKLMS--PSMQGRFGIQDLMILSRKTQYKNRFPVPLCLEIIQERLQNDYYRS 1686
Query: 1673 LEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNKL 1715
LEA K D VMLSN ES+ KN +S K+ RL DWF+R ++ L
Sbjct: 1687 LEALKHDFMVMLSNFESFVAKNEDMSKKIRRLSDWFDRNISPL 1729
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743976|emb|CBI36946.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1565 bits (4051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 796/1092 (72%), Positives = 893/1092 (81%), Gaps = 49/1092 (4%)
Query: 1 MDYWKLSSSSGAPSLGKAPLKFSSTVQEMAQLEQQDMVANQVVEADVDLREVYFLIIHFL 60
MD+ K SSS APSL PL FS+ + E Q ++++ + V + D+DLREVYFLI+HFL
Sbjct: 1 MDFQKCKSSSEAPSLSMVPLSFSNKLHERPQCQERN-TDHVVADVDIDLREVYFLIMHFL 59
Query: 61 SSGPCQRTLGLLWNELLEHQLLPRRYHAWFSRSGVNSGNDNDDGISFPLSYNKLVERYPH 120
S+GPCQ+T G WNELLEH+LLPRRYHAW+SRSG SG++ND+G SFPL YN LVERYPH
Sbjct: 60 SAGPCQKTFGQFWNELLEHELLPRRYHAWYSRSGACSGDENDNGFSFPLGYNNLVERYPH 119
Query: 121 IEWDHLVKLLRQLLLYKASPFHGRIGGIAPNAADVPTLLGSGSFSLLECDRSMKYKQVKP 180
I DHLVKLL+QL+L A P HG +GG AP+A DVPTLLG+GSFSLL+C + + KQVKP
Sbjct: 120 IGKDHLVKLLKQLMLNTAPPLHGEVGGNAPSAVDVPTLLGTGSFSLLDCHKKKENKQVKP 179
Query: 181 LPAYLRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLR 240
P YLRWPHMQADQV GLSLREIGGGF KHHRAPS+ SACYAIAKPSTMVQ+MQN+KKLR
Sbjct: 180 PPDYLRWPHMQADQVRGLSLREIGGGFTKHHRAPSIRSACYAIAKPSTMVQRMQNMKKLR 239
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV 300
GHRDAVYCAIFDRSGR+VITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNN LV
Sbjct: 240 GHRDAVYCAIFDRSGRYVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNVLV 299
Query: 301 ASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360
ASASNDF+IRVWRLPDGLPISVLRGHTGAVTAIAFSPRPS++YQLLSSSDDG+CRIWDAR
Sbjct: 300 ASASNDFIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSSVYQLLSSSDDGSCRIWDAR 359
Query: 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTF 420
+SQ SPRIYLPKPPDA+ GK++VPS NG SSSNG QSHQILCCA+NA+GTVFVTGSSDTF
Sbjct: 360 FSQCSPRIYLPKPPDAVAGKNSVPSMNGTSSSNGPQSHQILCCAFNASGTVFVTGSSDTF 419
Query: 421 ARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFK 480
ARVWSACKSS +DSEQP HE+DVLSGHENDVNYVQFS CA ASRS++SD FKEE++PKFK
Sbjct: 420 ARVWSACKSSTDDSEQPNHEIDVLSGHENDVNYVQFSACAGASRSSVSDTFKEESLPKFK 479
Query: 481 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540
NSWFCHDNIVTCSRDGSAIIWIPRSRR HGKVGRWTRAYHLKVPPPP+PPQPPRGGPRQR
Sbjct: 480 NSWFCHDNIVTCSRDGSAIIWIPRSRRYHGKVGRWTRAYHLKVPPPPMPPQPPRGGPRQR 539
Query: 541 LLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP 600
LLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA DGSLVHSLTGHSAS+YVLDVHPFNP
Sbjct: 540 LLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHSASTYVLDVHPFNP 599
Query: 601 RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660
RIAMSAGYDG+TIVWDIWEG PIR YEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG
Sbjct: 600 RIAMSAGYDGKTIVWDIWEGIPIRTYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 659
Query: 661 QGESQKDAKYDQFFLGDYRPLIRDSLGNVLDQETQLVPHRRNIQDPLCDSSMIPYEEPYQ 720
QGESQKDAKYDQFFLGDYRPLIRD++GNVLDQETQL PHRRNIQDPLCDSSMIPY EPYQ
Sbjct: 660 QGESQKDAKYDQFFLGDYRPLIRDTIGNVLDQETQLAPHRRNIQDPLCDSSMIPYSEPYQ 719
Query: 721 SMYQQRRLGALGIEWRPSSIKLAIGLDFSLGQDYAMPPLEDLERMMEPVPEFIDPVYWEP 780
+MYQQRRLGALGIEW PSSI LA+G DFSLGQ+Y MPPL DL+R+MEP+PE +D VYWEP
Sbjct: 720 TMYQQRRLGALGIEWHPSSINLAVGPDFSLGQEYQMPPLADLDRVMEPLPELVDAVYWEP 779
Query: 781 ENEVISDDNDSEYNIAEECASEAEQG---------------RDSEVEHSRKDGRRRSTRR 825
ENEVISDD DSEYNIAEE +SE E G D++VEHS KDG RRS R+
Sbjct: 780 ENEVISDDTDSEYNIAEEYSSEGEHGSLSAASSFSDPECSAEDTDVEHSHKDGLRRSRRK 839
Query: 826 KHRAEVELKTSSGRRVRKRNLDERDGSASGSNRTKKSKNSQKALKKKSSKAKLLRPQRVA 885
K+R+EVE+ TSSGRRV++RNL+E DG++S S RTKKSKN +K K+ SSK + LRPQR A
Sbjct: 840 KYRSEVEIMTSSGRRVKRRNLNECDGTSSRS-RTKKSKNGRKVSKRNSSKIQSLRPQRAA 898
Query: 886 ARNARSMFSRITGTST-GEDDSDSEYNSSNSDTVLQDSHVQSKEDDRNLQNMQQQHKREE 944
RNA +MFS+IT TST G+D+ E +SS S E
Sbjct: 899 KRNALNMFSQITETSTEGDDEEGLEDDSSGS----------------------------E 930
Query: 945 EQTIVESEFMGKPLELLESQSDTGNRKRLVLKLSLRDHKKALSLEDTRVKGDDMAKLPQS 1004
+ ++ E E ++ ESQS+ GNR+RLVLK SLRD KK++ EDTR K + A + S
Sbjct: 931 QSSLNEFE---NAIKFPESQSNAGNRRRLVLKFSLRDSKKSIPSEDTRPKCNTQADIVHS 987
Query: 1005 SSGPPQGTTERKIDLSLKEPGSSSAGSGIDVGLSQKHNRIVFADGSQDEKYDSQLEESAG 1064
S PP T E K + E SS+ D+ SQ HNR F + E+ + L+ SAG
Sbjct: 988 PSRPPPKTVEEKETNLISEDPESSSMHAADLEQSQNHNRDDFIHKPRSEETEDHLDTSAG 1047
Query: 1065 DMENKTRWAEVK 1076
+NK RW E K
Sbjct: 1048 YKDNKIRWGENK 1059
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357442265|ref|XP_003591410.1| WD-40 repeat protein-like protein [Medicago truncatula] gi|355480458|gb|AES61661.1| WD-40 repeat protein-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1539 bits (3985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 953/1870 (50%), Positives = 1164/1870 (62%), Gaps = 222/1870 (11%)
Query: 12 APSLGKAPLKFSSTVQEMAQLEQQDMVANQVVEADVDLREVYFLIIHFLSSGPCQRTLGL 71
A S+ PL + EMA+ +D V + + D+DL+EVYFLI+HFLS+GPC+R+
Sbjct: 97 ASSMNGVPLSVPNQEDEMAR-SLKDTVPVKT-DVDIDLKEVYFLIMHFLSTGPCKRSFDQ 154
Query: 72 LWNELLEHQLLPRRYHAWFSRSGVNSGND--NDDGISFPLSYNKLVER------------ 117
L +ELLEH+LLPRRYHAWFSRSG S +D +DDGIS PL YN L++R
Sbjct: 155 LRSELLEHRLLPRRYHAWFSRSGEPSEDDAGDDDGISLPLHYNNLMDRTYPNSKMVSEPI 214
Query: 118 -----------------------YPHIEWDHLVKLLRQLLLYKASPFHGRIGGIAPNAAD 154
YPH+ DHLVKLL+QL+L A P +G++ +PNAAD
Sbjct: 215 YDQLDHLLPGHRSRVTLQMFNPGYPHVAKDHLVKLLKQLMLSTAHPLNGKVN--SPNAAD 272
Query: 155 VPTLLGSGSFSLLECDRSMKYKQVKPLPAYLRWPHMQADQVHGLSLREIGGGFKKHHRAP 214
VPTLLG GSFSLL+ DR KQVK P Y+RWPH++A+QV GLSLREIGGGF KHHRAP
Sbjct: 273 VPTLLGDGSFSLLDVDRKTTVKQVKLPPLYMRWPHLKANQVQGLSLREIGGGFTKHHRAP 332
Query: 215 SVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCA---------------IFDRSGRFVI 259
SV SACYAIAKPSTMVQKMQNIKKLRGHR AVYCA IFD SGR+VI
Sbjct: 333 SVRSACYAIAKPSTMVQKMQNIKKLRGHRVAVYCAKLRLVIFEKWCYLAAIFDGSGRYVI 392
Query: 260 TGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVAS----------------- 302
+GSDDRLVKIWSMETAFCLASCRGH GDITDLAVSSNN LVAS
Sbjct: 393 SGSDDRLVKIWSMETAFCLASCRGHRGDITDLAVSSNNVLVASASNDFVIRVWRLPDGMS 452
Query: 303 ----------------------------ASNDFVIRVW--RLPDGLPISVLR---GHTGA 329
AS+D R+W R I V R G
Sbjct: 453 VSVLRGHDAAVNTIAFSPRPNAVYHLLSASDDGTCRIWDARSSQNPCIYVPRPSDAINGQ 512
Query: 330 VTAIAFSPR--PSAIYQLLSSSDDGTCRIWDARY----SQY---SPRIYLPKP-PDA--- 376
+ F R P+ + ++ + D G C R+ Q+ SP + L P P +
Sbjct: 513 INDSNFVNRTKPTLVGLVVLAWDLGVCSSQGLRFDSPRCQFRWASPSLALNAPLPSSGRW 572
Query: 377 --------ITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACK 428
GK N P N PSSSN + QILCCA+NANGTVFVTGSSDTFARVWSACK
Sbjct: 573 DWTPWIRRSLGKGNAPPANLPSSSNAQRGLQILCCAFNANGTVFVTGSSDTFARVWSACK 632
Query: 429 SSVEDSEQ-PIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHD 487
+ ++SEQ PIHE+D+LSGHENDVNYVQFSGCAV+S+ SD++KEEN KF+N + HD
Sbjct: 633 PNTDNSEQPPIHEMDLLSGHENDVNYVQFSGCAVSSKVMTSDSWKEENTQKFRNFRYSHD 692
Query: 488 NIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG 547
NIVTCSRDGSAIIW+PRSRRSHGKVGRW RAYHLKVPPPPLPPQPPRGGPR+RLLPTPRG
Sbjct: 693 NIVTCSRDGSAIIWVPRSRRSHGKVGRWIRAYHLKVPPPPLPPQPPRGGPRKRLLPTPRG 752
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607
VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH+ SSYVLDVHPFNPRIAMSAG
Sbjct: 753 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHTESSYVLDVHPFNPRIAMSAG 812
Query: 608 YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKD 667
YDGRTIVWDIWEG PIR YEIGR +LVDGKFSPDGTSIVLSDDVGQIY L+TGQGESQKD
Sbjct: 813 YDGRTIVWDIWEGIPIRTYEIGRIRLVDGKFSPDGTSIVLSDDVGQIYFLSTGQGESQKD 872
Query: 668 AKYDQFFLGDYRPLIRDSLGNVLDQETQLVPHRRNIQDPLCDS-------SMIPYEEPYQ 720
AKYDQFFLGDYRPLIRD+ GNVLDQETQL P+RR++Q+PLCDS SM+PY EPYQ
Sbjct: 873 AKYDQFFLGDYRPLIRDAQGNVLDQETQLPPNRRHVQEPLCDSSMLWTEESMLPYPEPYQ 932
Query: 721 SMYQQRRLGALGIEWRPSSIKLAIGLDFSLGQDYAMPPLEDLERMMEPVPEFIDP-VYWE 779
S +QQRRLGALGIEW PS IK +G FS+ QD+ PL DLE M++P PEF+D ++WE
Sbjct: 933 SQFQQRRLGALGIEWNPSLIKYTVGPVFSVDQDFQEIPLVDLEGMLDPQPEFLDASIFWE 992
Query: 780 PENEVISDDNDSEYNIAEECASEAEQG-----RDSEVEHSR-----KDGRRRSTRRKHRA 829
PE++ +SDDNDSEYN+ E+ +S AEQG S++E+S +DG RRS R H
Sbjct: 993 PEHDNVSDDNDSEYNVNEDNSSAAEQGAVSAISSSDLEYSEGDSNNRDGFRRSRRTNHGV 1052
Query: 830 EVELKTSSGRRVRKRNLDERDGSASGSNRTKKSKNSQKALKKKSSKAKLLRPQRVAARNA 889
VE SSGRRVRKRN +E +G+ SG+NR KKSK S K+ KKKSSKAK RPQR AA NA
Sbjct: 1053 GVEGMISSGRRVRKRNFEECNGNTSGNNRIKKSKGSSKSRKKKSSKAKTSRPQRTAAHNA 1112
Query: 890 RSMFSRITGTSTGEDDSDSEYNSSNSDTVLQDSHVQSKEDDRNLQNMQQQHKREEEQTIV 949
R+MF +I TST +D DS+ SS+S ++ E +R + N +H+ ++ +
Sbjct: 1113 RNMFVQIGETSTDGEDDDSDDESSDSFQDSEN----FSEPERKIHN---KHEELKKPLLE 1165
Query: 950 ESEFMGKPLELLESQSDTGNRKRLVLKLSLRDHKKALSLEDTRVKGDDMAKLPQSSSGPP 1009
ES + ESQ++ +R RLVLKLSLRD KK + LED R ++ A + SS P
Sbjct: 1166 ESADISNTPPYSESQANLESRPRLVLKLSLRDSKKNVPLEDRRFACENQADIVCQSSRPQ 1225
Query: 1010 -----QGTTERKIDLSLKEPGSSSAGSGIDVGLSQKHNRIVFADGSQDEKYDSQLEESAG 1064
Q T+ K S P ++ + L + HNR +E S L+ S
Sbjct: 1226 PLERVQKTSPEK---SFTGPDTNVMSDDTNANLPECHNR--------NENAISYLDTSVC 1274
Query: 1065 DMENKTRWAEVKIRTSKRSSSSGVLLPPDANFDVHNDSIGDVNRCVKLENGHGKFSSNSE 1124
++ R + + + S +L + N +SIG + KLE N E
Sbjct: 1275 ---HEGRIDQRRHKYEFSRSGDALLTDTEVNGHPEFNSIGKSHMTNKLEADSSMV--NIE 1329
Query: 1125 TSCYGCVRSCSDKEKFGSDALLDLA-SVRKEELARHEDIKKSSSFNSTPLVDHQQNDDVH 1183
S + S E +G D +A R D K S + D Q+N
Sbjct: 1330 LSDFDNTAKFSSLESWGMDNRQQIADGPIASGYDRLNDGDKGRSRSDKCTEDSQEN---- 1385
Query: 1184 KSRNEDVGTNYRDELKENPPL---RVRIRTKGILRDTKSPSEQKSSTSVKDLPSAESDPI 1240
NE V +N+ E+K P ++ I+ K D +P + K D A SD +
Sbjct: 1386 ---NEVVHSNHTQEVKMKAPFKPTKIIIKKKQPPEDIANPLKLKVGIPKADSIGARSDVV 1442
Query: 1241 PMSESSLCMEGNLMSEVPEEAEGYGRSSSDQLLNSNLKFK----VRDGSKSSYKTRTDIE 1296
S + + ++E E G +SS QLLNS + V + +K S+K+ +
Sbjct: 1443 --SGNPAFTGPDRLTEAVEGGNGTS-TSSPQLLNSYFDQRSYNHVHERNK-SHKSEPNPN 1498
Query: 1297 --AFDGGMEDGI--NHEASGIDSPEAASGSIRKTRSMKMKIISREPIAANCNFKSKNGHD 1352
FD G I N G+D S IR+ RS++MK S EP A N K + G
Sbjct: 1499 GFGFDLGENASIYSNQRDLGVDLSNVVSDPIRRPRSIRMKTTSEEPNAFNTRVKIRGGQS 1558
Query: 1353 LVGTSKTVGNSSMEAHDEFFPEEWIPTSTVKSRPRSTRNRRGDHDGH-PCLLSGRKSNFP 1411
GTS + +SS++ DE + RS RNR ++ + P L R N
Sbjct: 1559 SRGTS-SREDSSIKVSDE-----------LHQSTRSARNRSDEYIANDPGTLIRRMPNHH 1606
Query: 1412 VRKLSWLMLS-EHEEGYRYIPQLGDEVIYSRQGHQEFIESTGSQEVGPWWSINGYISAVE 1470
V+KLSWLMLS EHEEGYRYIPQLGDEV+Y RQGH+E++ES E GPW S G + AVE
Sbjct: 1607 VKKLSWLMLSEEHEEGYRYIPQLGDEVVYLRQGHEEYVESCTMSEQGPWISFQG-LRAVE 1665
Query: 1471 TCKVVNLVYATFPGSGDSCCKITLKFVDPSSSVLGKAFKLTLPELRDFPDFVVEKTLYDA 1530
CKV L YA PGSGDSCCK+ LKFVDPSS K+FKL LPEL +F DFV+EKT YDA
Sbjct: 1666 ICKVEKLEYAELPGSGDSCCKLWLKFVDPSSRAFRKSFKLILPELINFCDFVIEKTFYDA 1725
Query: 1531 AISRNWTHRDKCQIWWRNANGEGGTWWKGRITKSQAKSEEFPNSPWDRYMVEYKTGD--- 1587
A+ RNW+ ++C++WWRN +G+GG+WW G+I +AKS+EFP+SPWDR+ +EY T D
Sbjct: 1726 AMKRNWSPEERCRVWWRNEDGKGGSWWYGQIVALKAKSDEFPDSPWDRFKIEYDTDDPTE 1785
Query: 1588 SHLHSPWEMHDPNVMWEHPEIDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLD 1647
H HSPWE++DP V WEHP ID E RDKLLS F KL ++ Y Q LN+ A++ D
Sbjct: 1786 DHFHSPWELNDPEVQWEHPHIDHEIRDKLLSYFTKLYH-----REKYDFQALNQVAERTD 1840
Query: 1648 YLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYF--IKNAALSAKVERLR 1705
+ NRFPVP YP +I+LRL N+YYR++E K DI VMLSNAE +F IKN L KVER+
Sbjct: 1841 FCNRFPVPFYPGLIQLRLQNDYYRNVEGVKHDIMVMLSNAEEFFRVIKNGKLQRKVERIS 1900
Query: 1706 DWFNRTLNKL 1715
+W R L ++
Sbjct: 1901 EWLGRKLERI 1910
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083262|emb|CBI22898.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1471 bits (3809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 785/1249 (62%), Positives = 931/1249 (74%), Gaps = 88/1249 (7%)
Query: 1 MDYWKLSSSSGAPSLGKAPLKFSSTVQEMAQLEQQDMVANQVVEADVDLREVYFLIIHFL 60
M K S APS+ PL FSS VQE QL + + D+DLREVYFLI+HFL
Sbjct: 1 MALQKYIPSGDAPSVSMKPLSFSSKVQEKVQLADPEGSPTMDADVDIDLREVYFLIMHFL 60
Query: 61 SSGPCQRTLGLLWNELLEHQLLPRRYHAWFSRSGVNSGNDNDDGISFPLSYNKLVERYPH 120
S+GPC RT G WNELLEHQLLPRRYHAW+SRSG+ SG++NDDG SFPLSYNKLVERYPH
Sbjct: 61 SAGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLRSGDENDDGSSFPLSYNKLVERYPH 120
Query: 121 IEWDHLVKLLRQLLLYKASPFHGRIGGIAPNAADVPTLLGSGSFSLLECDRSMKYKQVKP 180
I DHLVKLL+QL+L P G I G PNAADVPTLLG+GSFSLL D + +V P
Sbjct: 121 IGKDHLVKLLKQLILSTTHPSQGMIRGNVPNAADVPTLLGTGSFSLLGNDMDKGHNEVNP 180
Query: 181 LPAYLRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLR 240
P ++RWPHMQADQV GLSLREIGGGF +H+RAPS+ +ACYA+AKPSTMVQKMQNIKKLR
Sbjct: 181 PPIHMRWPHMQADQVRGLSLREIGGGFTRHNRAPSIRAACYAVAKPSTMVQKMQNIKKLR 240
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV 300
GHR+AVYCAIFDR+GR+VITGSDDRLVKIWSMETA+CLASCRGHEGDITDLAVSSNN LV
Sbjct: 241 GHRNAVYCAIFDRTGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
Query: 301 ASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360
AS+SND +IRVWRLPDGLPISVLRGHTGAVTAIAFSPRPS++YQLLSSSDDGTCRIWDAR
Sbjct: 301 ASSSNDCIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSSVYQLLSSSDDGTCRIWDAR 360
Query: 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTF 420
YSQ+SPRIY+P+PPD+I GK+NV PSSSNG QSHQI CCA+NANGTVFVTGSSDT
Sbjct: 361 YSQFSPRIYVPRPPDSIAGKNNV-----PSSSNGPQSHQIFCCAFNANGTVFVTGSSDTL 415
Query: 421 ARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFK 480
ARVW+ACKS+ ++S+QP HE+D+LSGHENDVNYVQFSGCAV+SR +++++ KEENVPKFK
Sbjct: 416 ARVWNACKSNPDESDQPNHEMDILSGHENDVNYVQFSGCAVSSRFSVAESSKEENVPKFK 475
Query: 481 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540
NSWF HDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPP+PPQPPRGGPRQR
Sbjct: 476 NSWFTHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPPRGGPRQR 535
Query: 541 LLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP 600
+LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH+ S+YVLDVHPFNP
Sbjct: 536 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHTESTYVLDVHPFNP 595
Query: 601 RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660
RIAMSAGYDG+TIVWDIWEGTPIRIY+ RFKLVDGKFSPDGTSI+LSDDVGQ+Y+L+TG
Sbjct: 596 RIAMSAGYDGKTIVWDIWEGTPIRIYDTARFKLVDGKFSPDGTSIILSDDVGQLYILSTG 655
Query: 661 QGESQKDAKYDQFFLGDYRPLIRDSLGNVLDQETQLVPHRRNIQDPLCDSSMIPYEEPYQ 720
QGESQKDA YDQFFLGDYRPLI+D+ GNVLDQETQL P+RRN+QD LCD++MIPY EPYQ
Sbjct: 656 QGESQKDAMYDQFFLGDYRPLIQDTYGNVLDQETQLAPYRRNMQDLLCDATMIPYPEPYQ 715
Query: 721 SMYQQRRLGALGIEWRPSSIKLAIGLDFSLGQDYAMPPLEDLERMMEPVPEFIDPVYWEP 780
SMYQQRRLGALGIEWRPSS++LA+G DF+L QDY M PL DL+ +++P+PEFID + WEP
Sbjct: 716 SMYQQRRLGALGIEWRPSSLRLAVGPDFNLDQDYQMLPLPDLDVLIDPLPEFIDVMDWEP 775
Query: 781 ENEVISDDNDSEYNIAEECASEAEQG--------------RDSEVEHSRKDGRRRSTRRK 826
ENEV +DD DSEYN+ EE ++ EQG DS+VE+S KDG RRS R+K
Sbjct: 776 ENEVQTDDTDSEYNVTEEYSTGGEQGSLSSNSSGDPECSAEDSDVENSHKDGLRRSKRKK 835
Query: 827 HRAEVELKTSSGRRVRKRNLDERDGSASGSNRTKKSKNSQKALKKKSSKAKLLRPQRVAA 886
+AE E+ T SGRRV++RNLDE DG++ SNRT+KS++ +K K SSK+K LRPQR AA
Sbjct: 836 QKAETEIMTFSGRRVKRRNLDEFDGNSLRSNRTRKSRSGRKVSHKNSSKSKSLRPQRAAA 895
Query: 887 RNARSMFSRITGTST-GEDDSDSEYNSSNSDTVLQDSHVQSKEDDRNLQNMQQQHKREEE 945
RNA ++FSR+ GTST GED+ SE + S S++ L+DS+++S E D +LQN Q +H + +E
Sbjct: 896 RNALTLFSRMKGTSTDGEDEDGSEGDLSESESSLEDSNIESDESDGSLQNEQCKHSKGKE 955
Query: 946 QTIVESEFMGKPLELLESQSDTGNRKRLVLKLSLRDHKKALSLEDTRVKGDDMAKLPQSS 1005
++ E E M K E ES + GNR+RLVLK +RD + L + ++ A L SS
Sbjct: 956 VSLDEFEDMDKQHEHPESCMNAGNRRRLVLKFPIRDSNRLL------LAPENQADLVGSS 1009
Query: 1006 SGPPQGTTERKIDLSLKEPGSSSAGSGIDVGLSQKHNRIVFADGSQDEKYDSQLEESAGD 1065
S PQ +ER Q EK + L+ G
Sbjct: 1010 SKAPQEASER----------------------------------GQPEKIEDHLDLFEGY 1035
Query: 1066 MENKTRWAEVKIRTSKRSSSSGVLLPPDANFDVHNDSIGDVNRCVKLENGHGKFSSNSET 1125
+ K RW VK RTSKR V+ P ++ D + +C+ +GH
Sbjct: 1036 KDGKIRWGGVKARTSKRLR---VVEPMPSDTDARS------RQCI---DGH--------D 1075
Query: 1126 SCYGCVRSCSDKEKFGSDALLDLASVRKEELARHEDIKKSSSFNSTP-LVDHQQNDDVHK 1184
+ + + EK D S E H + +++ P V+ D
Sbjct: 1076 ATENTINGFQEPEKN-----YDRISPHSEIKYHHSSFNECMNYDEPPKQVNMVAGDTAAS 1130
Query: 1185 SRNEDVGTNYRDELKENPP--LRVRIRTKGILRDTKSPSEQKSSTSVKD 1231
S GT++ LKE+ ++RIR+K IL D + PS+ K +SV+D
Sbjct: 1131 SVQHSNGTDHPPHLKESSTSSTKLRIRSKKILEDPEIPSDPKIKSSVED 1179
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558137|ref|XP_003547364.1| PREDICTED: uncharacterized protein LOC100818665 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1399 bits (3621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 733/1114 (65%), Positives = 869/1114 (78%), Gaps = 48/1114 (4%)
Query: 1 MDYWKLSSSSGAPSLGKAPLKFSSTVQEMAQLEQQDMVANQVVEADVDLREVYFLIIHFL 60
M K + S APS+ L FSS V + A+L++ ++ N ++ D+DLRE+YFLI+HFL
Sbjct: 1 MALQKYAPSGNAPSVNMKHLSFSSKVPKKAELDEANL--NHNMDVDIDLREIYFLIMHFL 58
Query: 61 SSGPCQRTLGLLWNELLEHQLLPRRYHAWFSRSGVNSGNDNDDGISFPLSYNKLVERYPH 120
S+GPC +T WNELLEHQLLPRRYHAW+SR+G SG+ +DDG+SFPL+YN LVERY H
Sbjct: 59 SAGPCHKTHLQFWNELLEHQLLPRRYHAWYSRTGACSGDKDDDGLSFPLNYNMLVERYSH 118
Query: 121 IEWDHLVKLLRQLLLYKASPFHGRIGGIAPNAADVPTLLGSGSFSLLECDRSMKYKQVKP 180
IE DHLVKLL+QLLL ASP G G APNAADVPTLLGSGSFSLL DR K K+VK
Sbjct: 119 IEKDHLVKLLKQLLLNTASPSLGMNLGNAPNAADVPTLLGSGSFSLLSYDRD-KMKEVKW 177
Query: 181 LPAYLRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLR 240
P ++RWPHM+A+QVHGL+LREIGGGF +HHRAPS+ +ACYAIAKPSTMVQKMQNIK+LR
Sbjct: 178 PPPHMRWPHMKANQVHGLNLREIGGGFPRHHRAPSIRAACYAIAKPSTMVQKMQNIKRLR 237
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV 300
GHR+AVYCAIFDR+GR+VITGSDDRLVKIWSMETA+CLASCRGH+GDITDLAVSSNN LV
Sbjct: 238 GHRNAVYCAIFDRAGRYVITGSDDRLVKIWSMETAYCLASCRGHDGDITDLAVSSNNALV 297
Query: 301 ASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360
AS+SND VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRP+A+YQLLSSSDDGTCRIWDAR
Sbjct: 298 ASSSNDCVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPNAVYQLLSSSDDGTCRIWDAR 357
Query: 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTF 420
Y+Q SPR+Y+P+P D++ GKSN GPSSS QSHQI CCA+NANGTVFVTGSSD
Sbjct: 358 YTQSSPRLYVPRPSDSVIGKSN-----GPSSSTVPQSHQIFCCAFNANGTVFVTGSSDNL 412
Query: 421 ARV----WSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476
ARV W+ACK S++D+ QP+HE+DVLSGHENDVNYVQFSGCAVASR + ++ +KEEN+
Sbjct: 413 ARVFLQVWNACKLSMDDTGQPVHEIDVLSGHENDVNYVQFSGCAVASRFSTAETWKEENI 472
Query: 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536
PKFKNSW HDNIVTCSRDGSAIIWIP+SRRSHGK GRWTRAYHL+VPPPP+PPQP RGG
Sbjct: 473 PKFKNSWLNHDNIVTCSRDGSAIIWIPKSRRSHGKSGRWTRAYHLRVPPPPMPPQPQRGG 532
Query: 537 PRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVH 596
PRQR+LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA DGSLVHSLTGH+ S+YVLDVH
Sbjct: 533 PRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVH 592
Query: 597 PFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYL 656
PFNPRIAMSAGYDGRTIVWDIWEG PIR YEI RFKLVDGKFSPDGTSI+LSDDVGQ+Y+
Sbjct: 593 PFNPRIAMSAGYDGRTIVWDIWEGLPIRTYEISRFKLVDGKFSPDGTSIILSDDVGQLYI 652
Query: 657 LNTGQGESQKDAKYDQFFLGDYRPLIRDSLGNVLDQETQLVPHRRNIQDPLCDSSMIPYE 716
L+TGQGESQKDAKYDQFFLGDYRPLI+D+ GNVLDQETQ+VP+RR++QD LCDS+MIPY
Sbjct: 653 LSTGQGESQKDAKYDQFFLGDYRPLIQDTHGNVLDQETQIVPYRRSLQDLLCDSAMIPYP 712
Query: 717 EPYQSMYQQRRLGALGIEWRPSSIKLAIGLDFSLGQDYAMPPLEDLERMMEPVPEFIDPV 776
EPYQS +QQRRLGALG EWRPSS++LA+G DFSL DY M PL DL+ + EP+PEFID +
Sbjct: 713 EPYQSEFQQRRLGALGFEWRPSSLRLAVGPDFSLDPDYHMLPLADLDLLTEPLPEFIDAM 772
Query: 777 YWEPENEVISDDNDSEYNIAEECASEAEQG--------------RDSEVEHSRKDGRRRS 822
WEPE EV SDD DSEYN+ E+ +S+ E+G +SE E + D RRS
Sbjct: 773 EWEPEVEVFSDDTDSEYNVTEDFSSKGEKGCSSSNASGDSGCSTDNSEGEDTCMDNIRRS 832
Query: 823 TRRKHRAEVELKTSSGRRVRKRNLDERDGSASGSNRTKKSKNSQKALKKKSSKAKLLRPQ 882
R+K + E E+ TSSGRRV++RNLDERDG+ GS+R++K K+ QK L++KSSK+K RPQ
Sbjct: 833 KRKKQKTETEVMTSSGRRVKRRNLDERDGNTFGSSRSRKGKSVQKTLRRKSSKSKSSRPQ 892
Query: 883 RVAARNARSMFSRITGTST-GEDDSDSEYNSSNSDTVLQDSHVQSKEDDRNLQNMQQQHK 941
R AARNA +FS+ITGT T GE+DS + S S++ LQ+S++ S E D LQN Q +
Sbjct: 893 RAAARNALHLFSKITGTPTDGEEDSLVG-DFSGSESTLQESNIDSDESDGTLQNEQLNYS 951
Query: 942 REEEQTIVESEFMGKPLELLESQSDTGNRKRLVLKLSLRDHKKALSLEDTRVKGDDMAKL 1001
+ +E + ESE K EL E+ + N++RLVLKL RD K+ + + D +L
Sbjct: 952 KGKEVSYYESENT-KSHELTETHVNLMNKRRLVLKLPNRDISKSTN------EFDYQTEL 1004
Query: 1002 PQSSSGPPQGTTERKIDLSLKEPGSSSAGSGIDVGLSQKHNRIVFADGSQDEKYDSQLEE 1061
SSS Q T+ G SS SG G S + + D ++ ++ +
Sbjct: 1005 VGSSSKSSQEATD------FNGNGPSSKDSGYYSG-STSYPTVETTDQAKLDQVTDHV-- 1055
Query: 1062 SAGDMENKTRWAEVKIRTSKRSSSSGVLLPPDAN 1095
D+ K RW V+ R+SK G +P D N
Sbjct: 1056 ---DLLGKIRWGMVRARSSK-PLRVGEAMPSDTN 1085
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356532519|ref|XP_003534819.1| PREDICTED: uncharacterized protein LOC100819598 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1378 bits (3566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 728/1100 (66%), Positives = 858/1100 (78%), Gaps = 48/1100 (4%)
Query: 1 MDYWKLSSSSGAPSLGKAPLKFSSTVQEMAQLEQQDMVANQVVEADVDLREVYFLIIHFL 60
M K + S APS+ L FSS V + A+L++ + N ++ D+DLRE+YFLI+HFL
Sbjct: 1 MALQKYAPSGNAPSVNIKHLSFSSKVPKKAELDEAN--PNHNMDVDIDLREIYFLIMHFL 58
Query: 61 SSGPCQRTLGLLWNELLEHQLLPRRYHAWFSRSGVNSGNDNDDGISFPLSYNKLVERYPH 120
S+GPC +T WNELLEHQLLPRRYHAW+SR+G SG+ +DDG+SFPL+YN LVERY H
Sbjct: 59 SAGPCHKTYIQFWNELLEHQLLPRRYHAWYSRTGACSGDKDDDGLSFPLNYNMLVERYSH 118
Query: 121 IEWDHLVKLLRQLLLYKASPFHGRIGGIAPNAADVPTLLGSGSFSLLECDRSMKYKQVKP 180
IE DHLVKLL+QLLL ASP G G APNAADVPTLLGSGSFSLL DR K K+VK
Sbjct: 119 IEKDHLVKLLKQLLLNTASPSLGMNLGNAPNAADVPTLLGSGSFSLLSYDRD-KMKEVKR 177
Query: 181 LPAYLRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLR 240
P ++RWPHM+A+QVHGLSLREIGGGF +HHRAPS+ +ACYA+AKPSTMVQKMQNIK+LR
Sbjct: 178 PPPHMRWPHMKANQVHGLSLREIGGGFPRHHRAPSIRAACYALAKPSTMVQKMQNIKRLR 237
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV 300
GHR+AVYCAIFDRSGR+V+TGSDDRLVKIWSMETA+CLASCRGH+GDITDLAVSSNN LV
Sbjct: 238 GHRNAVYCAIFDRSGRYVVTGSDDRLVKIWSMETAYCLASCRGHDGDITDLAVSSNNALV 297
Query: 301 ASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360
AS+SND VIRVWRLPDGLPISVLRGHTGAVTAIAFSPR +A+YQLLSSSDDGTCRIWDAR
Sbjct: 298 ASSSNDCVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRLNALYQLLSSSDDGTCRIWDAR 357
Query: 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTF 420
Y+Q SPR+Y+P+P D++ GKS+ GPSSS QS QI CCA+NANGTVFVTGSSD
Sbjct: 358 YTQSSPRLYVPRPSDSVIGKSS-----GPSSSTVPQSRQIFCCAFNANGTVFVTGSSDNL 412
Query: 421 ARV----WSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476
ARV W+ACK S++D++QPIHE+DVLSGHENDVNYVQFSGCAVASR + ++ KEEN+
Sbjct: 413 ARVFLQVWNACKLSMDDTDQPIHEIDVLSGHENDVNYVQFSGCAVASRFSTAETLKEENI 472
Query: 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536
PKFKNSW HDNIVTCSRDGSAIIWIP+SRRSHGK GRWTRAYHL+VPPPP+PPQP RGG
Sbjct: 473 PKFKNSWLNHDNIVTCSRDGSAIIWIPKSRRSHGKSGRWTRAYHLRVPPPPMPPQPQRGG 532
Query: 537 PRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVH 596
PRQR+LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA DGSLVHSLTGH+ S+YVLDVH
Sbjct: 533 PRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVH 592
Query: 597 PFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYL 656
PFNPRIAMSAGYDGRTIVWDIWEG PIR YEI RFKLVDGKFS DGTSI+LSDDVGQ+Y+
Sbjct: 593 PFNPRIAMSAGYDGRTIVWDIWEGMPIRTYEISRFKLVDGKFSSDGTSIILSDDVGQLYI 652
Query: 657 LNTGQGESQKDAKYDQFFLGDYRPLIRDSLGNVLDQETQLVPHRRNIQDPLCDSSMIPYE 716
L+TGQGESQKDAKYDQFFLGDYRPLI+D+ GNVLDQETQ+VP+RRN+QD LCDS+MIPY
Sbjct: 653 LSTGQGESQKDAKYDQFFLGDYRPLIQDTHGNVLDQETQIVPYRRNLQDLLCDSAMIPYP 712
Query: 717 EPYQSMYQQRRLGALGIEWRPSSIKLAIGLDFSLGQDYAMPPLEDLERMMEPVPEFIDPV 776
EPYQS +QQRRLGALG+EWRPSS++LA+G DFSL DY M PL DL+ + EP+PEFID +
Sbjct: 713 EPYQSEFQQRRLGALGLEWRPSSLRLAVGPDFSLDPDYHMLPLADLDLLTEPLPEFIDAM 772
Query: 777 YWEPENEVISDDNDSEYNIAEECASEAEQG--------------RDSEVEHSRKDGRRRS 822
WEPE EV SDD DSEYN+ E S+ E+G +SE E + D RRS
Sbjct: 773 EWEPEVEVFSDDTDSEYNVTEGFFSKGEKGGSSSNASGDSGCSTDNSEGEDTCMDSIRRS 832
Query: 823 TRRKHRAEVELKTSSGRRVRKRNLDERDGSASGSNRTKKSKNSQKALKKKSSKAKLLRPQ 882
R+K +AE E+ TSSGRRV++RNLDERDG+ GS+R++K K+ QK ++KSSK+K RPQ
Sbjct: 833 KRKKQKAETEVMTSSGRRVKRRNLDERDGNTFGSSRSRKGKSVQKTSRRKSSKSKSSRPQ 892
Query: 883 RVAARNARSMFSRITGTST-GEDDSDSEYNSSNSDTVLQDSHVQSKEDDRNLQNMQQQHK 941
R AARNA +FS+ITGT T GE+DS + S S++ LQ+S++ S E LQN Q +
Sbjct: 893 RAAARNALHLFSKITGTPTDGEEDSLVG-DFSGSESTLQESNIDSDESGGTLQNEQLNYS 951
Query: 942 REEEQTIVESEFMGKPLELLESQSDTGNRKRLVLKLSLRDHKKALSLEDTRVKGDDMAKL 1001
+ +E + ESE K EL E+ ++ N KRLVLKL RD K+ + + A+L
Sbjct: 952 KGKEVSYYESEDT-KSHELTETHVNSMN-KRLVLKLPNRDISKSTN------EFGYQAEL 1003
Query: 1002 PQSSSGPPQGTTERKIDLSLKEPGSSSAGSGIDVGLSQKHNRIVFADGSQDEKYDSQLEE 1061
SSS Q T D + P SS SG G S + + D ++ + +
Sbjct: 1004 VGSSSKTAQEAT----DFNGNRP--SSKDSGYCSG-STSYPAVEKTDQAKLGQVTDHV-- 1054
Query: 1062 SAGDMENKTRWAEVKIRTSK 1081
D+ K RW V+ R+SK
Sbjct: 1055 ---DLLGKIRWGMVRARSSK 1071
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1715 | ||||||
| TAIR|locus:2061997 | 1520 | AT2G47410 "AT2G47410" [Arabido | 0.582 | 0.657 | 0.605 | 0.0 | |
| TAIR|locus:2158044 | 1677 | AT5G49430 "AT5G49430" [Arabido | 0.583 | 0.596 | 0.576 | 0.0 | |
| UNIPROTKB|F1MTQ0 | 2322 | BRWD1 "Uncharacterized protein | 0.165 | 0.121 | 0.326 | 9.7e-76 | |
| MGI|MGI:1890651 | 2304 | Brwd1 "bromodomain and WD repe | 0.165 | 0.122 | 0.335 | 7.3e-75 | |
| UNIPROTKB|Q9NSI6 | 2320 | BRWD1 "Bromodomain and WD repe | 0.165 | 0.121 | 0.329 | 2.4e-74 | |
| UNIPROTKB|Q8WWQ0 | 1821 | PHIP "PH-interacting protein" | 0.169 | 0.159 | 0.324 | 2.3e-73 | |
| MGI|MGI:1932404 | 1821 | Phip "pleckstrin homology doma | 0.169 | 0.159 | 0.324 | 9.4e-73 | |
| UNIPROTKB|E1BSG1 | 2293 | BRWD1 "Uncharacterized protein | 0.105 | 0.078 | 0.380 | 1.6e-72 | |
| RGD|1309030 | 2303 | Brwd1 "bromodomain and WD repe | 0.145 | 0.108 | 0.347 | 1.7e-72 | |
| ZFIN|ZDB-GENE-050208-261 | 1805 | phip "pleckstrin homology doma | 0.211 | 0.201 | 0.298 | 5.2e-72 |
| TAIR|locus:2061997 AT2G47410 "AT2G47410" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3125 (1105.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 629/1038 (60%), Positives = 743/1038 (71%)
Query: 19 PLKFSSTVQEMAQLEQQDMVANQVVEADVDLREVYFLIIHFLSSGPCQRTXXXXXXXXXX 78
P + VQ L+ D ++ + + D+DLREVYFLI+HFLS GPC+RT
Sbjct: 13 PSNLAKLVQGNVPLQPHDSHSS-LTDLDMDLREVYFLILHFLSIGPCERTFGHLRDEILE 71
Query: 79 XXXXPRRYHAWFSRSGVNSGNDNDDGISFPLSYNKLVERYPHIEWDHXXXXXXXXXXYKA 138
PRRYH+W+SRSG+ SG +DDGIS PLSY+ L+ERYPHIE DH +
Sbjct: 72 KGLLPRRYHSWWSRSGIYSGRADDDGISLPLSYDNLIERYPHIEKDHLVKLLKQLILNPS 131
Query: 139 SPFHGRIGGIAPNAADVPTLLGSGSFSLLECDRSMKYKQVKPLPAYLRWPHMQADQVHGL 198
P H R+ G APNAADVPTLLGSG+FSL++ +++ ++ + + +YLRWPHM ADQV GL
Sbjct: 132 FPSHMRVEGNAPNAADVPTLLGSGTFSLVDRSNNIESQKARHVASYLRWPHMHADQVRGL 191
Query: 199 SLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFV 258
SLREIGGGF+KHHRAPS+ SAC+AIAKPSTMVQKMQNIKKLRGHR+AVYCAIFDRSGR+V
Sbjct: 192 SLREIGGGFRKHHRAPSILSACHAIAKPSTMVQKMQNIKKLRGHRNAVYCAIFDRSGRYV 251
Query: 259 ITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL 318
ITGSDDRLVKIWSMETA CLASCRGHEGDITDLAVSSNN LVASASNDFVIRVWRLPDG+
Sbjct: 252 ITGSDDRLVKIWSMETALCLASCRGHEGDITDLAVSSNNALVASASNDFVIRVWRLPDGM 311
Query: 319 PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAIT 378
PISVLRGHTGAVTAIAFSPR +++YQLLSSSDDGTCRIWDARYSQ+ PRIY+P P DA T
Sbjct: 312 PISVLRGHTGAVTAIAFSPRQASVYQLLSSSDDGTCRIWDARYSQWLPRIYVPSPSDANT 371
Query: 379 GKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPI 438
G QSHQILCCAYNANGT+FVTGSSD+ ARVWSA K +++D+EQP
Sbjct: 372 GSTSNAS----------QSHQILCCAYNANGTIFVTGSSDSNARVWSASKPNLDDAEQPT 421
Query: 439 HELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSA 498
HELDVL GHENDVNYVQFSGCAVA +S+ +DA KE++ PKFKNSWFCHDNIVTCSRDGSA
Sbjct: 422 HELDVLRGHENDVNYVQFSGCAVAPKSSTADALKEDSYPKFKNSWFCHDNIVTCSRDGSA 481
Query: 499 IIWIPRSRRSHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIVWSLDNR 558
IIW PRSR+ HGK GRW + YHLKV VNMI+WSLDNR
Sbjct: 482 IIWTPRSRKFHGKSGRWMKGYHLKVPPPPLPPQPPRGGPRQRFLPTPRGVNMIIWSLDNR 541
Query: 559 FVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618
FVLAAIMDCRICVWNA DGSLVH LTGHS SSYVLDVHPFNPRIAMSAGYDG+TI+WDIW
Sbjct: 542 FVLAAIMDCRICVWNAADGSLVHCLTGHSESSYVLDVHPFNPRIAMSAGYDGKTIIWDIW 601
Query: 619 EGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKYDQFFLGDY 678
EG PI++YEIGRFKLVDGKFS DGTSIVLSDDVGQIY LNTGQGESQK+AKYDQFFLGDY
Sbjct: 602 EGIPIKVYEIGRFKLVDGKFSQDGTSIVLSDDVGQIYFLNTGQGESQKNAKYDQFFLGDY 661
Query: 679 RPLIRDSLGNVLDQETQLVPHRRNIQDPLCDSSMIPYEEPYQSMYQQRRLGALGIEWRPS 738
RPLIRD+ G+VLDQETQL+PHRRN+QD LCDSSMIPY EP Q+M+QQRRLGALG+EWRPS
Sbjct: 662 RPLIRDTNGHVLDQETQLLPHRRNLQDLLCDSSMIPYPEPDQTMFQQRRLGALGVEWRPS 721
Query: 739 SIKLAIGLDFSLGQDYAMPPLEDLERMMEPVPEFIDPVYWEPENEVISDDNDSEYNI--- 795
SIK ++G DFSLGQDY MPPL DL+R++EP+PEFID +YWEPE+EV+SDDNDSEYN
Sbjct: 722 SIKFSVGPDFSLGQDYIMPPLADLDRLIEPLPEFIDAMYWEPEHEVLSDDNDSEYNAEVS 781
Query: 796 -----AEECASEAEQ----GRDSEVEXXXXXXXXXXXXXXXXAEVELKTSSGRRVRKRNL 846
A C++ + + DS+VE +V + TSSGRR KR L
Sbjct: 782 SDGARASPCSNSSNELECSSEDSDVENIHESSYHWKRRRKH-PKVNVSTSSGRR-DKRIL 839
Query: 847 DERDGSASGSNRTXXXXXXXXXXXXXXXXXXXXRPQRVAARNARSMFSRITGTSTGXXXX 906
DE D S SG RT RPQR AA+NARS+ S+I+G+S+
Sbjct: 840 DENDSSNSGIKRTKNRRIVVKASKRKHSDVKASRPQRAAAQNARSLLSKISGSSSDEVDD 899
Query: 907 XXXXXXXXXXTVLQDSHVQS-KEDDRNLQNMQQQHKREEEQTIVESEFMGKPLELLESQS 965
D + + ++ D+ Q ++ ++++ ++ + KP E + S+
Sbjct: 900 DNDSSNSES-----DRSIPTLRQLDKPSQMLESLSNDKQKKRLIVKISVKKPAESMGSKG 954
Query: 966 DTGNRKRLVLKLSLRDHKKALSLEDTRVKGDDMAKLPQSSSGPPQGTTE-RKIDLSLKEP 1024
D N+ L +LS K L E+ RV G ++ P SSS +G + + I S+ P
Sbjct: 955 DVINQADLE-QLS----SKPLE-ENHRVIGI-YSREPGSSSVDAKGDSGCQSIPYSMNTP 1007
Query: 1025 GSSSAGSGIDVGLSQKHN 1042
A + + Q N
Sbjct: 1008 QREKADNQLIRSSDQDQN 1025
|
|
| TAIR|locus:2158044 AT5G49430 "AT5G49430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2979 (1053.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 601/1043 (57%), Positives = 718/1043 (68%)
Query: 14 SLGKAPLKFSSTVQEMAQLEQQDMVANQVVEADVDLREVYFLIIHFLSSGPCQRTXXXXX 73
SL PL FS + Q+ D+V + D+DLREVYFL++H LSSGPCQ+T
Sbjct: 14 SLPMKPLNFSRKLPGNVQIPDPDIVQSVAPNIDLDLREVYFLMLHLLSSGPCQKTYALLR 73
Query: 74 XXXXXXXXXPRRYHAWFSRSGVNSGNDNDDGISFPLSYNKLVERYPHIEWDHXXXXXXXX 133
PRRYHAW+SRSG+ SG++NDDG SFPL+Y +L +RY H++ DH
Sbjct: 74 HELLEHELLPRRYHAWYSRSGLPSGDENDDGNSFPLNYTELAKRYSHVKKDHLVELLKQL 133
Query: 134 XXYKASPFHGR-IG-GIAPNAADVPTLLGSGSFSLLECDRSMKYKQVKPLPAYLRWPHMQ 191
P R IG G A VPTLLG+GSFSLL D+ + +KP P +RWPHM
Sbjct: 134 VFVSNRPNPSRGIGDGNKMIGAGVPTLLGTGSFSLLSSDKEIVGSDLKPPPIGMRWPHMH 193
Query: 192 ADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIF 251
ADQV G+SLREIGGGF +HHRAPS+ +ACY IAKPS+MVQKMQNIK+LRGHR+AVYCAI
Sbjct: 194 ADQVRGISLREIGGGFARHHRAPSIRAACYVIAKPSSMVQKMQNIKRLRGHRNAVYCAIL 253
Query: 252 DRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRV 311
DRSGR+VITGSDDRLVK+WSM+TA+CLASCRGHEGDITDLAVSSNN +ASASND VIRV
Sbjct: 254 DRSGRYVITGSDDRLVKVWSMDTAYCLASCRGHEGDITDLAVSSNNIFIASASNDCVIRV 313
Query: 312 WRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLP 371
WRLPDGLP+SVLRGHTGAVTAIAFSPRP + YQLLSSSDDGTCRIWDAR +Q++PRIY+P
Sbjct: 314 WRLPDGLPVSVLRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIWDARGAQFAPRIYVP 373
Query: 372 KPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDTFARV---WSACK 428
+PP GK QSHQI CCA+NA+G+VFVTGSSDT ARV WSA K
Sbjct: 374 RPPSP-DGKNSGPSSSNAQ-----QSHQIFCCAFNASGSVFVTGSSDTLARVYSVWSANK 427
Query: 429 SSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN 488
++ +D EQP HE+DVL+GHENDVNYVQFSGCA S+ +++D K+ENVPKFKNSWFCHDN
Sbjct: 428 TNTDDPEQPNHEMDVLAGHENDVNYVQFSGCAAGSKFSVTDYSKDENVPKFKNSWFCHDN 487
Query: 489 IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXV 548
IVTCSRDGSAIIWIPR RRSHGK RWTRAYHLKV V
Sbjct: 488 IVTCSRDGSAIIWIPRLRRSHGKSCRWTRAYHLKVPPPPMPPQPPRGGPRQRILPTPRGV 547
Query: 549 NMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGY 608
NMI WSLDNRFVLAAIMDCRICVWNA DGSLVHSLTGH+AS+YV+DVHPFNPRIAMSAGY
Sbjct: 548 NMIAWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTASTYVMDVHPFNPRIAMSAGY 607
Query: 609 DGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDA 668
DG+TIVWDIWEG PI+IY+I +KLVDGKFSPDGTSI+LSDDVGQ+Y+L+TGQG+SQKDA
Sbjct: 608 DGKTIVWDIWEGIPIQIYDISHYKLVDGKFSPDGTSIILSDDVGQLYILSTGQGDSQKDA 667
Query: 669 KYDQFFLGDYRPLIRDSLGNVLDQETQLVPHRRNIQDPLCDSSMIPYEEPYQSMYQQRRL 728
KYDQFFLGDYRPLI+D+ GNVLDQE+QL P+RRN++DPLCDS MIPYEEPYQ+ +Q+RRL
Sbjct: 668 KYDQFFLGDYRPLIQDTYGNVLDQESQLQPYRRNMEDPLCDSGMIPYEEPYQTTFQKRRL 727
Query: 729 GALGIEWRPSSIKLAIGLDFSLGQDYAMPPLEDLERMMEPVPEFIDPVYWEPENEVISDD 788
GALG EWRPSS+KLA+G D +L +DY MPPL DL+ + EP+PEFID + WEPE +++SD+
Sbjct: 728 GALGKEWRPSSLKLAVGPDITLDRDYQMPPLADLD-LAEPLPEFIDVMEWEPEVDILSDE 786
Query: 789 NDSEYNIAEECASEAEQ--------GR------DSEVEXXXXXXXXXXXXXXXXAEVELK 834
NDSEYN+ EE +S EQ G +S + E +
Sbjct: 787 NDSEYNVPEEYSSGKEQECLNSSTSGESGSSSGESYEDDDHQNSLRRSKRKKHKKEAGIM 846
Query: 835 TSSGRRVRKRNLDERDGSASGSNRTXXXXXXXXXXXXXXXXXXXXRPQRVAARNARSMFS 894
TSSGRRV+KRN DE +G+ S RT RP+R AARNA S FS
Sbjct: 847 TSSGRRVKKRNFDELEGAPSNKKRTRKSRSGRKESKRKSSKSKSSRPRRAAARNALSWFS 906
Query: 895 RITGTSTGXXXXXXX--XXXXXXXTVLQDSHVQSKEDDRNLQNMQQQHKREEEQTIVESE 952
+ITGTS + QDS E + L N + + + + +S+
Sbjct: 907 KITGTSKDAEEEEVSELSDSSESESTTQDSGTGDSELEVALLNGHGKQSKGKTILVCDSD 966
Query: 953 FMGKPLELLESQSDTGNRKRLVLKLSLRDHKKALSLEDTRVKGDDMAKLPQSSSGPPQGT 1012
+ ++ E+ T R+RLVL+ +R+ K LE+ LP SS P T
Sbjct: 967 DGAQQCDIRETH--TAERRRLVLRFPVRNSDKLTLLEN----------LPGSSCDVPSPT 1014
Query: 1013 TERKIDLSLKEPGSSSAGSGIDV 1035
+ PG+ G+DV
Sbjct: 1015 LGNGCTEDSRIPGNQF--EGLDV 1035
|
|
| UNIPROTKB|F1MTQ0 BRWD1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 9.7e-76, Sum P(7) = 9.7e-76
Identities = 105/322 (32%), Positives = 159/322 (49%)
Query: 110 SYNKLVERYPHIEWDHXXXXXXXXXXYKASPFHGRIGGIAPNAADVPTLLGSGSFSLLEC 169
SY +LV H+ DH + P + I P+ + V +LLG+G SLL
Sbjct: 62 SYEELVLSNKHVAPDHLLQICQ-----RIGPMLDK--EIPPSISRVTSLLGAGRQSLLRT 114
Query: 170 DRSMKYKQVKPLP-AYL---RWPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAK 225
+ ++ K A L R P M + +L EI G + + CS ++ A
Sbjct: 115 AKDCRHTVWKGSAFAALHRGRPPEMPVNYGSPPNLVEIHRG-----KQLTGCST-FSTAF 168
Query: 226 PSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHE 285
P M Q ++ +++ GH AVYC FDR+G + TGSDD LVKIWS L++ RGH
Sbjct: 169 PGAMYQHIKMHRRILGHLSAVYCVAFDRTGHRIFTGSDDCLVKIWSTHNGRLLSTLRGHS 228
Query: 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQ- 344
+I+D+AV+ NT++A+ S D +IRVW L P++VL+GHTG++T++ FSP +
Sbjct: 229 AEISDMAVNYENTMIAAGSCDKIIRVWCLRTCAPVAVLQGHTGSITSLQFSPMAKGSQRY 288
Query: 345 LLSSSDDGTCRIW--DARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILC 402
++S+ DGT W D ++SPR P T K Q+LC
Sbjct: 289 MVSTGADGTVCFWQWDLESLKFSPR------PLKFTEKPRPGV-------------QMLC 329
Query: 403 CAYNANGTVFVTGSSDTFARVW 424
+++ G TGS+D R++
Sbjct: 330 SSFSVGGMFLATGSTDHVIRMY 351
|
|
| MGI|MGI:1890651 Brwd1 "bromodomain and WD repeat domain containing 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 359 (131.4 bits), Expect = 7.3e-75, Sum P(6) = 7.3e-75
Identities = 108/322 (33%), Positives = 160/322 (49%)
Query: 110 SYNKLVERYPHIEWDHXXXXXXXXXXYKASPFHGRIGGIAPNAADVPTLLGSGSFSLLEC 169
SY +LV H+ DH + P + + P+ + V +LLG+G SLL
Sbjct: 62 SYEELVLSNKHVAPDHLLQICQ-----RIGPMLDK--EVPPSISRVTSLLGAGRQSLLRT 114
Query: 170 DRSMKYKQVKPLP-AYL---RWPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAK 225
+ ++ K A L R P M + SL EI G R + CS ++ A
Sbjct: 115 AKDCRHTVWKGSAFAALHRGRPPEMPVNYGPPPSLVEIHRG-----RQLTGCST-FSTAF 168
Query: 226 PSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHE 285
P TM Q ++ +++ GH AVYC FDR+G + TGSDD LVKIWS L++ RGH
Sbjct: 169 PGTMYQHIKMHRRILGHLSAVYCVAFDRTGHRIFTGSDDCLVKIWSTHNGRLLSTLRGHS 228
Query: 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQ- 344
+I+D+AV+ NTL+A+ S D +IRVW L P++VL+GHTG++T++ FSP +
Sbjct: 229 AEISDMAVNYENTLIAAGSCDKIIRVWCLRTCAPVAVLQGHTGSITSLQFSPMAKGPQRY 288
Query: 345 LLSSSDDGTCRIW--DARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILC 402
++S+ DGT W D ++SPR P T K Q+LC
Sbjct: 289 MVSTGADGTVCFWQWDLESLKFSPR------PLKFTEKPRPGV-------------QMLC 329
Query: 403 CAYNANGTVFVTGSSDTFARVW 424
+++ G TGS+D R++
Sbjct: 330 SSFSVGGMFLATGSTDHVIRMY 351
|
|
| UNIPROTKB|Q9NSI6 BRWD1 "Bromodomain and WD repeat-containing protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 354 (129.7 bits), Expect = 2.4e-74, Sum P(7) = 2.4e-74
Identities = 106/322 (32%), Positives = 160/322 (49%)
Query: 110 SYNKLVERYPHIEWDHXXXXXXXXXXYKASPFHGRIGGIAPNAADVPTLLGSGSFSLLEC 169
SY +LV H+ DH + P + I P+ + V +LLG+G SLL
Sbjct: 62 SYEELVLSNKHVAPDHLLQICQ-----RIGPMLDK--EIPPSISRVTSLLGAGRQSLLRT 114
Query: 170 DRSMKYKQVKPLP-AYL---RWPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAK 225
+ ++ K A L R P M + +L EI G + + CS ++ A
Sbjct: 115 AKDCRHTVWKGSAFAALHRGRPPEMPVNYGSPPNLVEIHRG-----KQLTGCST-FSTAF 168
Query: 226 PSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHE 285
P TM Q ++ +++ GH AVYC FDR+G + TGSDD LVKIWS L++ RGH
Sbjct: 169 PGTMYQHIKMHRRILGHLSAVYCVAFDRTGHRIFTGSDDCLVKIWSTHNGRLLSTLRGHS 228
Query: 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQ- 344
+I+D+AV+ NT++A+ S D +IRVW L P++VL+GHTG++T++ FSP +
Sbjct: 229 AEISDMAVNYENTMIAAGSCDKIIRVWCLRTCAPVAVLQGHTGSITSLQFSPMAKGSQRY 288
Query: 345 LLSSSDDGTCRIW--DARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILC 402
++S+ DGT W D ++SPR P T K Q+LC
Sbjct: 289 MVSTGADGTVCFWQWDLESLKFSPR------PLKFTEKPRPGV-------------QMLC 329
Query: 403 CAYNANGTVFVTGSSDTFARVW 424
+++ G TGS+D R++
Sbjct: 330 SSFSVGGMFLATGSTDHVIRMY 351
|
|
| UNIPROTKB|Q8WWQ0 PHIP "PH-interacting protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 2.3e-73, Sum P(7) = 2.3e-73
Identities = 106/327 (32%), Positives = 161/327 (49%)
Query: 104 GISFPLSYNKLVERYPHIEWDHXXXXXXXXXXYKASPFHGRIGGIAPNAADVPTLLGSGS 163
G P +Y LV+ Y H+ DH ++ P + I + V TLLG+G
Sbjct: 53 GKEHPRTYQNLVKYYRHLAPDHLLQIC-----HRLGPLLEQ--EIPQSVPGVQTLLGAGR 105
Query: 164 FSLLECDRSMKYKQVKPLP-AYLRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYA 222
SLL ++S K+ K A L V+ S I + Y
Sbjct: 106 QSLLRTNKSCKHVVWKGSALAALHCGRPPESPVNYGSPPSIADTLFSRK-----LNGKYR 160
Query: 223 IAK--PSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLAS 280
+ + P+ + Q M+ K++ GH +VYC FDR+GR + TGSDD LVKIW+ + LA+
Sbjct: 161 LERLVPTAVYQHMKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDDGRLLAT 220
Query: 281 CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPS 340
RGH +I+D+AV+ NT++A+ S D +IRVW L P++VL+GH+ ++T++ FSP S
Sbjct: 221 LRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQFSPLCS 280
Query: 341 AIYQLLSSSD-DGT-CR-IWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQS 397
+ LSS+ DGT C +WDA + +PR P T +
Sbjct: 281 GSKRYLSSTGADGTICFWLWDAGTLKINPR------PAKFTERPRPGV------------ 322
Query: 398 HQILCCAYNANGTVFVTGSSDTFARVW 424
Q++C +++A G TGS+D RV+
Sbjct: 323 -QMICSSFSAGGMFLATGSTDHIIRVY 348
|
|
| MGI|MGI:1932404 Phip "pleckstrin homology domain interacting protein" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 346 (126.9 bits), Expect = 9.4e-73, Sum P(7) = 9.4e-73
Identities = 106/327 (32%), Positives = 161/327 (49%)
Query: 104 GISFPLSYNKLVERYPHIEWDHXXXXXXXXXXYKASPFHGRIGGIAPNAADVPTLLGSGS 163
G P +Y LV+ Y H+ DH ++ P + I + V TLLG+G
Sbjct: 53 GKEHPRTYQNLVKYYRHLAPDHLLQIC-----HRLGPLLEQ--EIPQSVPGVQTLLGAGR 105
Query: 164 FSLLECDRSMKYKQVKPLP-AYLRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYA 222
SLL ++S K+ K A L V+ S I + Y
Sbjct: 106 QSLLRTNKSCKHVVWKGSALAALHCGRPPESPVNYGSPPSIADTLFSRK-----LNGKYR 160
Query: 223 IAK--PSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLAS 280
+ + P+ + Q M+ K++ GH +VYC FDR+GR + TGSDD LVKIW+ + LA+
Sbjct: 161 LERLVPTAVYQHMKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDDGRLLAT 220
Query: 281 CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPS 340
RGH +I+D+AV+ NT++A+ S D +IRVW L P++VL+GH+ ++T++ FSP S
Sbjct: 221 LRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQFSPLCS 280
Query: 341 AIYQLLSSSD-DGT-CR-IWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQS 397
+ LSS+ DGT C +WDA + +PR P T +
Sbjct: 281 GSKRYLSSTGADGTICFWLWDAGTLKINPR------PTKFTERPRPGV------------ 322
Query: 398 HQILCCAYNANGTVFVTGSSDTFARVW 424
Q++C +++A G TGS+D RV+
Sbjct: 323 -QMICSSFSAGGMFLATGSTDHIIRVY 348
|
|
| UNIPROTKB|E1BSG1 BRWD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 319 (117.4 bits), Expect = 1.6e-72, Sum P(6) = 1.6e-72
Identities = 72/189 (38%), Positives = 101/189 (53%)
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607
V MI W+ D+ +V+ A+ + + VWN+ G L+H L GH+ +VL+ HPF+ RI +SAG
Sbjct: 432 VTMIAWNQDDNYVVTAVNNHLLKVWNSSTGQLLHDLVGHADEVFVLETHPFDSRIMLSAG 491
Query: 608 YDGRTIVWDIWEGTPIRIY--EI---GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662
+DG +WDI +GT + Y I G + D KFSPDG +D G + + G
Sbjct: 492 HDGNIFIWDITKGTKTKHYFNMIEGQGHGAVFDCKFSPDGQHFACTDSHGHLLIFGFGCS 551
Query: 663 ESQKDAKYDQFFLGDYRPLIRDSLGNVLDQETQLVPHRRNIQDP-LCDSSMIPYEEPYQS 721
+ + FF DYRPLIRDS VLD++TQ PH + P L D P+ YQ
Sbjct: 552 KPYEKIPDQMFFHTDYRPLIRDSNNYVLDEQTQQAPHL--MPPPFLVDVDGNPHPTKYQR 609
Query: 722 MYQQRRLGA 730
+ R A
Sbjct: 610 LVPGRENSA 618
|
|
| RGD|1309030 Brwd1 "bromodomain and WD repeat domain containing 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 1.7e-72, Sum P(7) = 1.7e-72
Identities = 98/282 (34%), Positives = 147/282 (52%)
Query: 150 PNAADVPTLLGSGSFSLLECDRSMKYKQVKPLP-AYL---RWPHMQADQVHGLSLREIGG 205
P+ + V +LLG+G SLL + ++ K A L R P M + SL +I
Sbjct: 95 PSISRVTSLLGAGRQSLLRTAKDCRHTVWKGSAFAALHRGRPPEMPVNYGPPPSLVDIHR 154
Query: 206 GFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDR 265
G + + CS ++ A P TM Q ++ +++ GH AVYC FDR+G + TGSDD
Sbjct: 155 G-----KQLTGCST-FSTAFPGTMYQHIKMHRRILGHLSAVYCVAFDRTGHRIFTGSDDC 208
Query: 266 LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRG 325
LVKIWS L++ RGH +I+D+AV+ NTL+A+ S D +IRVW L P++VL+G
Sbjct: 209 LVKIWSTHNGRLLSTLRGHSAEISDMAVNYENTLIAAGSCDKIIRVWCLRTCAPVAVLQG 268
Query: 326 HTGAVTAIAFSPRPSAIYQ-LLSSSDDGTCRIW--DARYSQYSPRIYLPKPPDAITGKXX 382
HTG++T++ FSP + ++S+ DGT W D ++SPR P T K
Sbjct: 269 HTGSITSLQFSPMAKGPQRYMVSTGADGTVCFWQWDLESLKFSPR------PLKFTEKPR 322
Query: 383 XXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDTFARVW 424
Q+LC +++ G TGS+D R++
Sbjct: 323 PGV-------------QMLCSSFSVGGMFLATGSTDHVIRMY 351
|
|
| ZFIN|ZDB-GENE-050208-261 phip "pleckstrin homology domain interacting protein" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 354 (129.7 bits), Expect = 5.2e-72, Sum P(6) = 5.2e-72
Identities = 130/435 (29%), Positives = 200/435 (45%)
Query: 104 GISFPLSYNKLVERYPHIEWDHXXXXXXXXXXYKASPFHGRIGGIAPNAADVPTLLGSGS 163
G P SY LV+ Y HI DH + SP R + + V +LLG+G
Sbjct: 53 GKEHPGSYENLVKLYRHISPDHLLQVCE-----RVSPLLER--EVPASVPGVNSLLGTGR 105
Query: 164 FSLLECDRSMKYKQVK--PLPAYLRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACY 221
S+L ++S K+ K L A + + G S I H R + Y
Sbjct: 106 QSVLRTNKSCKHVVWKGSALAALHCGRPPEPPVIFG-SPPNIAETI--HSRR---LNGSY 159
Query: 222 AIAK--PSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLA 279
+ + P+ + Q M+ K++ GH +VYC FDR+GR + TGSDD LVKIW+ + LA
Sbjct: 160 RLGQLVPTAVYQHMKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDDGHLLA 219
Query: 280 SCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRP 339
+ RGH +I+D+AV+ NTL+A+ S D +IRVW L P++VL GH ++T++ FSP
Sbjct: 220 TLRGHAAEISDMAVNYENTLLAAGSCDKMIRVWCLQTCAPLAVLEGHAASITSLQFSPLC 279
Query: 340 SAIYQLLSSSD-DGTCRIW--DARYSQYS--PRIYLPKPPDAITGKXXXXXXXXXXXXXX 394
S + LSS+ DGT W DAR ++ P ++ +P +
Sbjct: 280 SGNKRFLSSTGADGTICFWQWDARTLKFGQRPSKFIERPRPGV----------------- 322
Query: 395 LQSHQILCCAYNANGTVFVTGSSDTFARVW---SACKSSVEDSEQPIHELDVLS-GHEND 450
Q++C +++A G TGS+D RV+ + + E ++D + H D
Sbjct: 323 ----QMICSSFSAGGMFLATGSTDHIIRVYYFGGGQPEKISELESHTDKVDSIQFSHSGD 378
Query: 451 VNYVQFSGCAVAS---------RSAMSD-AFK----------EENVPKFKNS---WFCHD 487
+V S A RS + D A K E+ V K K + W C+D
Sbjct: 379 -RFVSGSRDGTARIWQLQQQDWRSILLDMATKLPGKYNPPPLEDKVTKLKVTMVAWDCND 437
Query: 488 N-IVTCSRDGSAIIW 501
N ++T + + + +W
Sbjct: 438 NTVITAANNLTLKVW 452
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1715 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-53 | |
| cd05529 | 128 | cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repe | 7e-40 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-39 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-38 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-34 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-34 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-24 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-21 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-20 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-17 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-17 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-16 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-13 | |
| smart00297 | 107 | smart00297, BROMO, bromo domain | 2e-09 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-08 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-08 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 4e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 7e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-06 | |
| pfam00439 | 84 | pfam00439, Bromodomain, Bromodomain | 5e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 9e-06 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 4e-05 | |
| cd05520 | 103 | cd05520, Bromo_polybromo_III, Bromodomain, polybro | 4e-04 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 6e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.001 | |
| cd04369 | 99 | cd04369, Bromodomain, Bromodomain | 0.001 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.002 | |
| cd05497 | 107 | cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like | 0.002 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 3e-53
Identities = 94/382 (24%), Positives = 147/382 (38%), Gaps = 93/382 (24%)
Query: 235 NIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVS 294
+ L+GH V C F G+ + TGS D +K+W +ET L + +GH G + D+A S
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 295 SNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354
++ T +AS S+D IR+W L G + L GHT V+++AFSP + SSS D T
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRIL---SSSSRDKTI 117
Query: 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVT 414
++WD + + G + + A++ +GT +
Sbjct: 118 KVWDVETGKCL---------TTLRG----------------HTDWVNSVAFSPDGTFVAS 152
Query: 415 GSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEE 474
S D ++W + + + L+GH +VN V FS
Sbjct: 153 SSQDGTIKLWDL------RTGKCVA---TLTGHTGEVNSVAFSP---------------- 187
Query: 475 NVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534
+ S DG+ +W + + G T H
Sbjct: 188 -----DGEKLL-----SSSSDGTIKLWDLSTGKCLG-----TLRGHEN------------ 220
Query: 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLD 594
GVN + +S D + + D I VW+ G V +L+GH+ S L
Sbjct: 221 ------------GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLA 268
Query: 595 VHPFNPRIAMSAGYDGRTIVWD 616
P R+A S DG +WD
Sbjct: 269 WSPDGKRLA-SGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|99958 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 7e-40
Identities = 54/130 (41%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 1586 GDSHLHSPWEMHDPNVMWEHPEIDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQK 1645
+ L S WE+ DP WE P I E R++L+S +KL S+ + Y ++ A
Sbjct: 1 LYNPLSSEWELFDPG--WEQPHIRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWY 58
Query: 1646 LDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLR 1705
DY NR PVP+ E IR RL N YYRSLEA + D+ ++LSNAE++ N+ ++ K +RL
Sbjct: 59 PDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFNEPNSEIAKKAKRLS 118
Query: 1706 DWFNRTLNKL 1715
DW R L+ L
Sbjct: 119 DWLLRILSSL 128
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 128 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 8e-39
Identities = 73/238 (30%), Positives = 110/238 (46%), Gaps = 43/238 (18%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDIT 289
++ + ++ L GH V F GR + + S D+ +K+W +ET CL + RGH +
Sbjct: 80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN 139
Query: 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS 349
+A S + T VAS+S D I++W L G ++ L GHTG V ++AFSP +LLSSS
Sbjct: 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE---KLLSSS 196
Query: 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNA 407
DGT ++WD TGK L+ H+ + A++
Sbjct: 197 SDGTIKLWDLS-----------------TGK----------CLGTLRGHENGVNSVAFSP 229
Query: 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVAS 463
+G + +GS D RVW + LSGH N V + +S G +AS
Sbjct: 230 DGYLLASGSEDGTIRVWDLRTGE---------CVQTLSGHTNSVTSLAWSPDGKRLAS 278
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 3e-38
Identities = 86/379 (22%), Positives = 133/379 (35%), Gaps = 102/379 (26%)
Query: 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFS 336
+ +GH G +T +A S + L+A+ S D I+VW L G + L+GHTG V +A S
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 337 PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396
+ L S S D T R+WD L T L
Sbjct: 61 ADGT---YLASGSSDKTIRLWD-----------LETGECVRT----------------LT 90
Query: 397 SHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV 454
H + A++ +G + + S D +VW VE + L L GH + VN V
Sbjct: 91 GHTSYVSSVAFSPDGRILSSSSRDKTIKVWD-----VETGKC----LTTLRGHTDWVNSV 141
Query: 455 QFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGR 514
FS + F + + S+DG+ +W R+
Sbjct: 142 AFSP----------------------DGTF----VASSSQDGTIKLWDLRT--------- 166
Query: 515 WTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 574
G L VN + +S D +L++ D I +W+
Sbjct: 167 --------------------GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206
Query: 575 VDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE--IGRFK 632
G + +L GH + P + + S DG VWD+ G ++
Sbjct: 207 STGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT 265
Query: 633 LVDGKFSPDGTSIV-LSDD 650
+ +SPDG + S D
Sbjct: 266 SLA--WSPDGKRLASGSAD 282
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 1e-34
Identities = 64/274 (23%), Positives = 114/274 (41%), Gaps = 67/274 (24%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDIT 289
++ + ++ L+GH V G ++ +GS D+ +++W +ET C+ + GH ++
Sbjct: 38 LETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS 97
Query: 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS 349
+A S + +++S+S D I+VW + G ++ LRGHT V ++AFSP + + SSS
Sbjct: 98 SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVA---SSS 154
Query: 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNA 407
DGT ++WD R + + L H + A++
Sbjct: 155 QDGTIKLWDLRTGK---CVAT------------------------LTGHTGEVNSVAFSP 187
Query: 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAM 467
+G ++ SSD ++W + + + L GHEN VN V FS
Sbjct: 188 DGEKLLSSSSDGTIKLWDL------STGKCLG---TLRGHENGVNSVAFSP--------- 229
Query: 468 SDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW 501
+ S DG+ +W
Sbjct: 230 ------------DGYLLA-----SGSEDGTIRVW 246
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 2e-34
Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 28/192 (14%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
+ + LRGH D V F G FV + S D +K+W + T C+A+ GH G++ +A
Sbjct: 126 KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAF 185
Query: 294 SSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT 353
S + + S+S+D I++W L G + LRGH V ++AFSP Y L S S+DGT
Sbjct: 186 SPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG---YLLASGSEDGT 242
Query: 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFV 413
R+WD R + ++G +N + A++ +G
Sbjct: 243 IRVWDLR---------TGECVQTLSGHTN----------------SVTSLAWSPDGKRLA 277
Query: 414 TGSSDTFARVWS 425
+GS+D R+W
Sbjct: 278 SGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 72/345 (20%), Positives = 115/345 (33%), Gaps = 93/345 (26%)
Query: 319 PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAIT 378
L+GHTG VT +AFSP L + S DGT ++WD
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKL---LATGSGDGTIKVWDL------------------- 38
Query: 379 GKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPI 438
+ + + A +A+GT +GSSD R+W ++ + +
Sbjct: 39 ------ETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL------ETGECV 86
Query: 439 HELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSA 498
L +GH + V+ V FS + + SRD +
Sbjct: 87 RTL---TGHTSYVSSVAFSP---------------------DGRI-----LSSSSRDKTI 117
Query: 499 IIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558
+W G L VN + +S D
Sbjct: 118 KVW-----------------------------DVETGKCLTTLRGHTDWVNSVAFSPDGT 148
Query: 559 FVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618
FV ++ D I +W+ G V +LTGH+ + P ++ S+ DG +WD+
Sbjct: 149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLL-SSSSDGTIKLWDLS 207
Query: 619 EGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663
G + + FSPDG + + G I + + GE
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE 252
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 99.8 bits (247), Expect = 2e-21
Identities = 98/423 (23%), Positives = 157/423 (37%), Gaps = 96/423 (22%)
Query: 242 HRDAVYCAIF---DRSGRFVITGSDDRLVKIWSMETAFCLASC-RGHEGDITDLAVSSNN 297
H +V D + + + S D VK+W + T L GH +T LA S +
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG 167
Query: 298 -TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356
L + +S D I++W L G P+S L GHT V+++AFSP + + S S DGT R+
Sbjct: 168 KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLL--IASGSSDGTIRL 225
Query: 357 WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS 416
WD TGK + +G S S +++ +G++ +GS
Sbjct: 226 WDLS-----------------TGKLLRSTLSGHSDSV--------VSSFSPDGSLLASGS 260
Query: 417 SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476
SD R+W D L LSGH + V V FS
Sbjct: 261 SDGTIRLW--------DLRSSSSLLRTLSGHSSSVLSVAFSP------------------ 294
Query: 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536
+ + S DG+ +W + + T H
Sbjct: 295 --------DGKLLASGSSDGTVRLW---DLETGKLLSSLTLKGHEGP------------- 330
Query: 537 PRQRLLPTPRGVNMIVWSLDNRFVLAAIM-DCRICVWNAVDGSLVHSLTGHSASSYVLDV 595
V+ + +S D +++ D I +W+ G + +L GHS + +
Sbjct: 331 -----------VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSF 378
Query: 596 HPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIY 655
P ++ S DG +WD+ G+ +R + ++ FSPDG S+ I
Sbjct: 379 SPDGRVVS-SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIR 437
Query: 656 LLN 658
L +
Sbjct: 438 LWD 440
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.7 bits (239), Expect = 1e-20
Identities = 93/387 (24%), Positives = 146/387 (37%), Gaps = 94/387 (24%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSD-DRLVKIWSMETAFCLASCRGHEGDITDLA 292
+ I+ L GH ++V F G+ + +GS D +K+W + T L++ GH ++ LA
Sbjct: 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA 205
Query: 293 VSSNNT-LVASASNDFVIRVWRLPDGLPI-SVLRGHTGAVTAIAFSPRPSAIYQLLSSSD 350
S + L+AS S+D IR+W L G + S L GH+ +V +FSP S L S S
Sbjct: 206 FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSL---LASGSS 261
Query: 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT 410
DGT R+WD R S R S +L A++ +G
Sbjct: 262 DGTIRLWDLRSSSSLLRTLSG------------------------HSSSVLSVAFSPDGK 297
Query: 411 VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470
+ +GSSD R+W + S L GHE V+ + FS
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSL-------TLKGHEGPVSSLSFSPD----------- 339
Query: 471 FKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPP 530
+ S DG+ +W R+ + + + +
Sbjct: 340 --------------GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVS-------- 377
Query: 531 QPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASS 590
+S D R V + D + +W+ GSL+ +L GH++
Sbjct: 378 ----------------------FSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRV 415
Query: 591 YVLDVHPFNPRIAMSAGYDGRTIVWDI 617
LD P +A S D +WD+
Sbjct: 416 TSLDFSPDGKSLA-SGSSDNTIRLWDL 441
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.5 bits (215), Expect = 2e-17
Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 22/219 (10%)
Query: 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF-CLASCRGHEGDITDLAVSSN 296
L GH D+V + F G + +GS D +++W + ++ L + GH + +A S +
Sbjct: 237 TLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD 295
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVLR--GHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354
L+AS S+D +R+W L G +S L GH G V++++FSP S + + SDDGT
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLL--VSGGSDDGTI 353
Query: 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ----------------SH 398
R+WD R + + +++ + + S+ ++ +
Sbjct: 354 RLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTS 413
Query: 399 QILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQP 437
++ ++ +G +GSSD R+W S S P
Sbjct: 414 RVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSP 452
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 6e-17
Identities = 52/277 (18%), Positives = 88/277 (31%), Gaps = 73/277 (26%)
Query: 395 LQSH--QILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVN 452
L+ H + C A++ +G + TGS D +VW + + L GH V
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT---------LKGHTGPVR 55
Query: 453 YVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN-IVTCSRDGSAIIWIPRSRRSHGK 511
V + + + S D + +W +
Sbjct: 56 DV---------------------------AASADGTYLASGSSDKTIRLWDLETGECVRT 88
Query: 512 VGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICV 571
+ H V+ + +S D R + ++ D I V
Sbjct: 89 LTG-----HTS------------------------YVSSVAFSPDGRILSSSSRDKTIKV 119
Query: 572 WNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE--IG 629
W+ G + +L GH+ + P +A S+ DG +WD+ G + G
Sbjct: 120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVA-SSSQDGTIKLWDLRTGKCVATLTGHTG 178
Query: 630 RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666
V FSPDG ++ S G I L + G+
Sbjct: 179 EVNSV--AFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.6 bits (205), Expect = 3e-16
Identities = 62/249 (24%), Positives = 98/249 (39%), Gaps = 33/249 (13%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVI-TGSDDRLVKIWSMETAFCLASCRGHEGDI 288
++ + + L GH D V F G +I +GS D +++W + T L S D
Sbjct: 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244
Query: 289 TDLAVSSNNTLVASASNDFVIRVWRLP-DGLPISVLRGHTGAVTAIAFSPRPSAIYQLLS 347
+ S + +L+AS S+D IR+W L + L GH+ +V ++AFSP L S
Sbjct: 245 VVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK---LLAS 301
Query: 348 SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS-------------------NNG 388
S DGT R+WD + + L ++ S P G
Sbjct: 302 GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361
Query: 389 PSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE 448
+L +++ +G V +GS+D R+W L L GH
Sbjct: 362 KPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLW---------DLSTGSLLRNLDGHT 412
Query: 449 NDVNYVQFS 457
+ V + FS
Sbjct: 413 SRVTSLDFS 421
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.4 bits (181), Expect = 2e-13
Identities = 89/444 (20%), Positives = 149/444 (33%), Gaps = 86/444 (19%)
Query: 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVA 301
+ ++ SG ++ D LV + + + RGHE IT +A S + L+
Sbjct: 26 NSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLL----RGHEDSITSIAFSPDGELLL 81
Query: 302 SASNDFVIRVWRLPDG-LPISVLRG-HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
S S+D I++W L +G I L G H +V+ +A S L SSS DGT ++WD
Sbjct: 82 SGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWD- 140
Query: 360 RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT 419
+ L +++T + P + S D
Sbjct: 141 LSTPGKLIRTLEGHSESVTSLAFSPDGK----------------------LLASGSSLDG 178
Query: 420 FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGC-----AVASRSAMSDAFKEE 474
++W + L L+GH + V+ + FS A S +
Sbjct: 179 TIKLWDL---------RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS 229
Query: 475 NVPKFKNSWFCHDN------------IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLK 522
+++ H + + + S DG+ +W T + H
Sbjct: 230 TGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLW----DLRSSSSLLRTLSGHSS 285
Query: 523 VPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHS 582
V + +S D + + + D + +W+ G L+ S
Sbjct: 286 ------------------------SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321
Query: 583 LT--GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSP 640
LT GH L P + DG +WD+ G P++ E L FSP
Sbjct: 322 LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVL-SVSFSP 380
Query: 641 DGTSIVLSDDVGQIYLLNTGQGES 664
DG + G + L + G
Sbjct: 381 DGRVVSSGSTDGTVRLWDLSTGSL 404
|
Length = 466 |
| >gnl|CDD|197636 smart00297, BROMO, bromo domain | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-09
Identities = 23/107 (21%), Positives = 46/107 (42%)
Query: 1609 DSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNN 1668
D + + KL + + + + + DY + P+ + I+ +L N
Sbjct: 1 DPKLQKKLQELLKAVLDKLDSHPLSWPFLKPVSRKEAPDYYDIIKKPMDLKTIKKKLENG 60
Query: 1669 YYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNKL 1715
Y S+E D N+M SNA +Y ++ + ++L +F + L +L
Sbjct: 61 KYSSVEEFVADFNLMFSNARTYNGPDSEVYKDAKKLEKFFEKKLREL 107
|
Length = 107 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 3e-08
Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 317 GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
G + L+GHTG VT++AFSP + L S SDDGT R+WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGN---LLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 3e-08
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 316 DGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
G + L+GHTG VT++AFSP L S SDDGT ++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGK---YLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 4e-07
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWS 271
+ +K L+GH V F G+++ +GSDD +K+W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-07
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWS 271
+ ++ L+GH V F G + +GSDD V++W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 7e-07
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312
L + +GH G +T +A S + +AS S+D I++W
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-06
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312
L + +GH G +T +A S + L+AS S+D +RVW
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-06
Identities = 14/80 (17%), Positives = 32/80 (40%)
Query: 1620 FNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDD 1679
++ + + + + DY P+ IR +L + Y+SL D
Sbjct: 1 CLEILEDLMEHPLAEPFLEPVDPEEYPDYYEVIKEPMDLSTIRQKLKSGKYKSLAEFLKD 60
Query: 1680 INVMLSNAESYFIKNAALSA 1699
+ ++ SNA +Y +++ +
Sbjct: 61 VELIFSNAITYNGEDSDIYK 80
|
Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 84 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.7 bits (117), Expect = 9e-06
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDIT 289
++ + +K L GH V F GR V +GS D V++W + T L + GH +T
Sbjct: 358 LRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVT 416
Query: 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323
L S + +AS S+D IR+W L L
Sbjct: 417 SLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (114), Expect = 4e-05
Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 53/247 (21%)
Query: 248 CAI-FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN---------- 296
CAI FDR G F T ++ +KI+ E+ + R + +LA S
Sbjct: 487 CAIGFDRDGEFFATAGVNKKIKIFECES--IIKDGRDIHYPVVELASRSKLSGICWNSYI 544
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356
+ VAS++ + V++VW + ++ ++ H V +I +S + L S SDDG+ ++
Sbjct: 545 KSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTL--LASGSDDGSVKL 602
Query: 357 WDARYSQYSPRIYLPKPPDAITGKSNV-----PSNNGPSSSNGLQSHQI----------- 400
W I I K+N+ PS +G S + G H++
Sbjct: 603 WS---------INQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP 653
Query: 401 LCCAYNANGTV----------FVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEND 450
LC + TV V+ S+D ++W S +E P+H GH N
Sbjct: 654 LCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHS---FMGHTNV 710
Query: 451 VNYVQFS 457
N+V S
Sbjct: 711 KNFVGLS 717
|
Length = 793 |
| >gnl|CDD|99951 cd05520, Bromo_polybromo_III, Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 1647 DYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRD 1706
DY P+ + IR +L N Y +LE + D+N+M NA+ Y + N+ + E+L+
Sbjct: 38 DYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQK 97
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. Length = 103 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 6e-04
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 282 RGHEGDITDLAVSS-NNTLVASASNDFVIRVWRLPDG--------LPISVLRGHTGAVTA 332
+GH I DL + + ++AS S D IRVW +P P +L+GH ++
Sbjct: 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISI 130
Query: 333 IAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPK 372
I ++P Y + SS D IWD + + +I +PK
Sbjct: 131 IDWNPM--NYYIMCSSGFDSFVNIWDIENEKRAFQINMPK 168
|
Length = 568 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.001
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 577 GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616
G L+ +L GH+ + P +A S DG VWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLA-SGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|99922 cd04369, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 1654 VPLYPEVI---------RLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERL 1704
P Y EVI + +L N Y+SLE + D+ ++ SNA++Y + + ++L
Sbjct: 32 APDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKL 91
Query: 1705 RDWFNRTL 1712
F + L
Sbjct: 92 EKLFEKLL 99
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. Length = 99 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.002
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 576 DGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616
G L+ +L GH+ + P +A S DG +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLA-SGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|99929 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.002
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 1643 AQKL---DYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESY 1690
A KL DY P+ I+ RL NNYY S D N M +N Y
Sbjct: 32 AVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIY 82
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 107 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1715 | |||
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.98 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.98 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.98 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.96 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.95 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG1787 | 1126 | consensus Kinase A-anchor protein Neurobeachin and | 99.94 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.94 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.94 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.94 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.94 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.94 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.93 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.92 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.92 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.92 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.92 | |
| PTZ00421 | 493 | coronin; Provisional | 99.92 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.92 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.92 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.92 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.92 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.92 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.91 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.91 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.91 | |
| cd06071 | 275 | Beach BEACH (Beige and Chediak-Higashi) domains, i | 99.91 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.91 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.91 | |
| PTZ00420 | 568 | coronin; Provisional | 99.91 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.9 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.9 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.9 | |
| PF02138 | 270 | Beach: Beige/BEACH domain; InterPro: IPR000409 The | 99.9 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.9 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.89 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.88 | |
| PTZ00421 | 493 | coronin; Provisional | 99.88 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.88 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.88 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.88 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.87 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.87 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.87 | |
| PTZ00420 | 568 | coronin; Provisional | 99.86 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.86 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.86 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.86 | |
| PF06507 | 83 | Auxin_resp: Auxin response factor; InterPro: IPR01 | 99.86 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.85 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.84 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.84 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.84 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.84 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.84 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.84 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.83 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.83 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.83 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.82 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.82 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.82 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.82 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.82 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.81 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.79 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.78 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.78 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.78 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.78 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.77 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.77 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.77 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.77 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.76 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.76 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.76 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.74 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.74 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.73 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.73 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.72 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.72 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.71 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.69 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.69 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.69 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.68 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.68 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.67 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.67 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.66 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.62 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.61 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.61 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.6 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.6 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.59 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.57 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.57 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.56 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.56 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.55 | |
| cd05529 | 128 | Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like | 99.54 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.54 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.52 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.52 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.49 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.49 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.49 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.47 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.47 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.46 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.46 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.45 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.45 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.45 | |
| KOG1786 | 1081 | consensus Lysosomal trafficking regulator LYST and | 99.43 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.43 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.43 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.43 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.42 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.42 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.4 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.39 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.34 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.34 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.32 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.31 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.29 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.28 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.26 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.26 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.25 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.25 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.25 | |
| cd05497 | 107 | Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily | 99.25 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.23 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.23 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.22 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.22 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.21 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.21 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.19 | |
| cd05507 | 104 | Bromo_brd8_like Bromodomain, brd8_like subgroup. I | 99.18 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.18 | |
| cd05509 | 101 | Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. | 99.17 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.17 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.17 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.16 | |
| cd05511 | 112 | Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum | 99.15 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.15 | |
| cd05495 | 108 | Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb | 99.14 | |
| cd05504 | 115 | Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li | 99.13 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.13 | |
| smart00297 | 107 | BROMO bromo domain. | 99.12 | |
| cd05502 | 109 | Bromo_tif1_like Bromodomain; tif1_like subfamily. | 99.11 | |
| cd05500 | 103 | Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami | 99.11 | |
| cd05508 | 99 | Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC | 99.11 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.1 | |
| cd05496 | 119 | Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub | 99.09 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.09 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.08 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.07 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.06 | |
| cd05517 | 103 | Bromo_polybromo_II Bromodomain, polybromo repeat I | 99.05 | |
| cd05499 | 102 | Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam | 99.03 | |
| cd05515 | 105 | Bromo_polybromo_V Bromodomain, polybromo repeat V. | 99.02 | |
| cd05528 | 112 | Bromo_AAA Bromodomain; sub-family co-occurring wit | 99.02 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.01 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.0 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.0 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.0 | |
| cd05505 | 97 | Bromo_WSTF_like Bromodomain; Williams syndrome tra | 99.0 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.0 | |
| cd05510 | 112 | Bromo_SPT7_like Bromodomain; SPT7_like subfamily. | 99.0 | |
| cd05520 | 103 | Bromo_polybromo_III Bromodomain, polybromo repeat | 98.98 | |
| cd05516 | 107 | Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s | 98.98 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.98 | |
| cd05503 | 97 | Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s | 98.98 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.96 | |
| cd05513 | 98 | Bromo_brd7_like Bromodomain, brd7_like subgroup. T | 98.96 | |
| cd05524 | 113 | Bromo_polybromo_I Bromodomain, polybromo repeat I. | 98.96 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.96 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.95 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.95 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.94 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.94 | |
| cd05519 | 103 | Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci | 98.94 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.93 | |
| cd05512 | 98 | Bromo_brd1_like Bromodomain; brd1_like subfamily. | 98.93 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.92 | |
| cd05518 | 103 | Bromo_polybromo_IV Bromodomain, polybromo repeat I | 98.9 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.9 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.9 | |
| cd05521 | 106 | Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik | 98.89 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.89 | |
| cd05498 | 102 | Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil | 98.88 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.87 | |
| PF00439 | 84 | Bromodomain: Bromodomain; InterPro: IPR001487 Brom | 98.86 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.85 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.85 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.85 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.85 | |
| cd05501 | 102 | Bromo_SP100C_like Bromodomain, SP100C_like subfami | 98.85 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.85 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.83 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.83 | |
| cd05525 | 106 | Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 | 98.83 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.81 | |
| cd05506 | 99 | Bromo_plant1 Bromodomain, uncharacterized subfamil | 98.81 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.79 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.76 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.75 | |
| cd05522 | 104 | Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l | 98.75 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.74 | |
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 98.72 | |
| cd04369 | 99 | Bromodomain Bromodomain. Bromodomains are found in | 98.7 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.69 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.67 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.65 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.63 | |
| cd05492 | 109 | Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | 98.59 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.56 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.55 | |
| cd05526 | 110 | Bromo_polybromo_VI Bromodomain, polybromo repeat V | 98.54 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.52 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.5 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.45 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.45 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.45 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.44 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.41 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.39 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.35 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.32 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.3 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.29 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.28 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.24 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.24 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.23 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.21 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.2 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.19 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.16 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.13 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.12 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.12 | |
| COG5076 | 371 | Transcription factor involved in chromatin remodel | 98.11 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.09 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.07 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.06 | |
| cd05491 | 119 | Bromo_TBP7_like Bromodomain; TBP7_like subfamily, | 98.06 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.95 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.94 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.93 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.92 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.88 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.79 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.78 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.77 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.77 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.77 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.76 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.75 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.75 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.71 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.67 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.66 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.65 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.62 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.54 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.53 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.52 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.49 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.48 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.48 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.46 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.4 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.36 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.36 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.31 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.31 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.22 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.22 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.21 | |
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 97.17 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.14 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.13 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.97 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.92 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.86 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.85 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.82 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.77 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.68 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.66 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.65 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.63 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.62 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.56 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.54 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.5 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 96.5 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.45 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 96.41 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.31 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.17 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.11 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.11 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.0 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 95.88 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 95.83 | |
| KOG1827 | 629 | consensus Chromatin remodeling complex RSC, subuni | 95.8 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.63 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.44 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 95.37 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.36 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.26 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.21 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.2 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.19 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.14 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 95.14 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.02 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.96 | |
| KOG1472 | 720 | consensus Histone acetyltransferase SAGA/ADA, cata | 94.91 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 94.88 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 94.85 | |
| KOG1786 | 1081 | consensus Lysosomal trafficking regulator LYST and | 94.72 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.71 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 94.53 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 94.52 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 94.31 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.14 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.11 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 93.73 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 93.72 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.71 | |
| PRK10115 | 686 | protease 2; Provisional | 93.66 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 93.53 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 93.48 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 93.37 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 93.08 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 92.85 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 92.75 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 92.7 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 92.56 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 92.39 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 91.91 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 91.89 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 91.06 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 90.98 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 90.94 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 90.36 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 90.15 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 89.98 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 89.82 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 89.82 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 89.6 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 89.48 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 89.47 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 89.46 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 89.32 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 89.24 | |
| KOG0008 | 1563 | consensus Transcription initiation factor TFIID, s | 88.83 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 88.4 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 87.65 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 87.16 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 86.63 | |
| PRK10115 | 686 | protease 2; Provisional | 86.62 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 86.53 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 85.18 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 84.38 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 83.87 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 83.63 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 83.24 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 83.1 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 82.39 | |
| cd05494 | 114 | Bromodomain_1 Bromodomain; uncharacterized subfami | 82.37 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 81.98 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 81.86 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 81.54 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 80.83 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 80.63 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 80.15 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 80.04 |
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-142 Score=1271.62 Aligned_cols=1094 Identities=51% Similarity=0.799 Sum_probs=836.3
Q ss_pred cchhHHHHHHHHhhccCchhhHHHHHHHHHHhcCCCccccccccccCCCCCCCCCCCCCccccCcccccccCCCCChHHH
Q 048801 47 VDLREVYFLIIHFLSSGPCQRTLGLLWNELLEHQLLPRRYHAWFSRSGVNSGNDNDDGISFPLSYNKLVERYPHIEWDHL 126 (1715)
Q Consensus 47 ~~i~ElyfLi~~fL~~gp~~~~~~~L~ReALESeyVS~~LH~WFGyKQrG~eAv~A~NVFh~LTYEG~Vdld~i~dp~~r 126 (1715)
.++.|+||||.+||+.|||.+++.+|..|++|.++++.+.|.|.+...- -.||.+|--++|+.++|+
T Consensus 13 l~lsevyflil~~lS~gPcert~~vl~~elee~~ll~pr~~~W~sn~~~-------------dd~eslvls~~hI~kdhl 79 (1113)
T KOG0644|consen 13 LDLSEVYFLILHYLSAGPCERTAQVLRQELEEYSLLPPRYHDWESNSGN-------------DDGESLVLSYKHIAKDHL 79 (1113)
T ss_pred cchhhHHHHHHhhcccCchhhcchhhhhhhhhhhccCccccccccCCCC-------------cccceeeccccccchHHH
Confidence 5679999999999999999999999999999999999999999433222 355556666899999999
Q ss_pred HHHHHHHHhcCCCCCCCccCCCCCC---CCCccccccCCccccccccccccccccccCCcccCCCCCCCCceeeeeeccc
Q 048801 127 VKLLRQLLLYKASPFHGRIGGIAPN---AADVPTLLGSGSFSLLECDRSMKYKQVKPLPAYLRWPHMQADQVHGLSLREI 203 (1715)
Q Consensus 127 ~aie~QI~nFGQTP~QL~~~pHPPr---~~~v~sll~~~~~sLl~~~~~~~~~~~~~p~~~~r~~~~~~d~V~~ls~~~~ 203 (1715)
..|++||. | .+..|.||+ .+.++++|+++.++|+...+.+... ..++.+.+|+|+|+++|+.+.++..
T Consensus 80 l~i~kqlv-----~--~~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~--~~~~s~~~~~h~~~~~~~~~sl~s~ 150 (1113)
T KOG0644|consen 80 LQILKQLV-----P--MLDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHT--VWKGSAFRWPHMHADQVRGVSLRSI 150 (1113)
T ss_pred HHHHHHhc-----c--CcCCCCCcceeeeecccchhcchhHHHHhhhhhcccc--cccccccccccccCcccccceeccC
Confidence 99999994 2 467888998 8899999999999999998877765 6677899999999999999999999
Q ss_pred cCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecC
Q 048801 204 GGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRG 283 (1715)
Q Consensus 204 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~g 283 (1715)
|++|..|+.++.+..+++.+++|..+++.++.++.|.||..+|+|++|+..|++|+||++|..|+||.++++.++..++|
T Consensus 151 ~~~~~~h~~a~~i~~at~~~akPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG 230 (1113)
T KOG0644|consen 151 GGGFEIHHRAPSIGCATFSIAKPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG 230 (1113)
T ss_pred CcchhhhhcCcccccceeeecCcHHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCC
Q 048801 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQ 363 (1715)
Q Consensus 284 Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~ 363 (1715)
|.+.|+.++.+.++.++|+++.|..|+||.+.++.++..|.+|++.|++|+|+|- .+.+.||++++||.+
T Consensus 231 hs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~-------~sss~dgt~~~wd~r--- 300 (1113)
T KOG0644|consen 231 HSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR-------ASSSDDGTCRIWDAR--- 300 (1113)
T ss_pred CccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc-------ccCCCCCceEecccc---
Confidence 9999999999999999999999999999999999999999999999999999995 377899999999987
Q ss_pred CcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee
Q 048801 364 YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV 443 (1715)
Q Consensus 364 ~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~ 443 (1715)
+...++.|.+..... ..-+.++-|..++.-++||+.|+....|.+..
T Consensus 301 ~~~~~y~prp~~~~~------------------~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~--------------- 347 (1113)
T KOG0644|consen 301 LEPRIYVPRPLKFTE------------------KDLVDSILFENNGDRFLTGSRDGEARNHEFEQ--------------- 347 (1113)
T ss_pred ccccccCCCCCCccc------------------ccceeeeeccccccccccccCCcccccchhhH---------------
Confidence 344455544433221 23466677777777888888887777765531
Q ss_pred ecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccC
Q 048801 444 LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523 (1715)
Q Consensus 444 l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~ 523 (1715)
+..+...+ .+++.+.|
T Consensus 348 l~~~~~~l------------------------------------if~t~ssd---------------------------- 363 (1113)
T KOG0644|consen 348 LAWRSNLL------------------------------------IFVTRSSD---------------------------- 363 (1113)
T ss_pred hhhhccce------------------------------------EEEecccc----------------------------
Confidence 11111111 11111110
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEE
Q 048801 524 PPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIA 603 (1715)
Q Consensus 524 ~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lL 603 (1715)
-..+.+++-.+..+++|++.+|.+++.+.+|...++.|.+||++.++.
T Consensus 364 --------------------------------~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ 411 (1113)
T KOG0644|consen 364 --------------------------------LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIA 411 (1113)
T ss_pred --------------------------------ccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhh
Confidence 013455666788899999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccccceeecCCCccEEE
Q 048801 604 MSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKYDQFFLGDYRPLIR 683 (1715)
Q Consensus 604 aSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~~~~~~fs~D~r~L~~ 683 (1715)
.++++||.+.|||+..|.+++.+..+++.+.+.+||+||+.++..+..|+++|+.++.++.++.+++.+||++||++|+.
T Consensus 412 msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak~dqffl~dyrplir 491 (1113)
T KOG0644|consen 412 MSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAKYDQFFLGDYRPLIR 491 (1113)
T ss_pred hhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccccccccceEeecCcccccc
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeecccccccCcCCCCCcccCCCCCCCCCccchhhhhhcccccceeecCCCCeEEeeeccccCccCCCCCchhhh
Q 048801 684 DSLGNVLDQETQLVPHRRNIQDPLCDSSMIPYEEPYQSMYQQRRLGALGIEWRPSSIKLAIGLDFSLGQDYAMPPLEDLE 763 (1715)
Q Consensus 684 d~~g~vld~~tq~~p~~~~~~~~lvD~~~~p~p~~~q~~~q~r~~g~~~l~~sPdg~~lAvg~~~~l~~~~~~~P~~d~~ 763 (1715)
+.+|.|+|+++|+.|| +++++++||..++|||.+||+++|+|+++++ ++.|+|+
T Consensus 492 dTn~~vldqeTq~~ph-~~~p~~l~ds~~iphpe~yqtl~q~rr~sa~---------------------dh~mp~l---- 545 (1113)
T KOG0644|consen 492 DTNGYVLDQETQLAPH-RNPPDFLCDSDMIPHPEPYQTLFQGRRLSAL---------------------DHLMPPL---- 545 (1113)
T ss_pred cccchhhhhHhhhccc-cCCCCceeccCCCcCCchhhhcccccccchh---------------------hhcCCcc----
Confidence 9999999999999999 5569999999999999999999999997663 6777773
Q ss_pred cccccCCCccccCcccCccccccCCCCcccchhhcccccccccCCcccccccccccchhhhhhhhhhhhccccCccchhh
Q 048801 764 RMMEPVPEFIDPVYWEPENEVISDDNDSEYNIAEECASEAEQGRDSEVEHSRKDGRRRSTRRKHRAEVELKTSSGRRVRK 843 (1715)
Q Consensus 764 ~~i~~~p~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (1715)
+||..|+|||+.+|++++++|+|+...+.+
T Consensus 546 -------~fia~~~~E~e~~Vls~~nds~~~~~~es~------------------------------------------- 575 (1113)
T KOG0644|consen 546 -------EFIATMDWEPEEQVLSDQNDSEYNRSPESL------------------------------------------- 575 (1113)
T ss_pred -------cchhhhccccchhhhhhcccccccCCcccc-------------------------------------------
Confidence 789999999999999999999998532200
Q ss_pred cccccccCCCCCcccchhccchhhhhcccccccccCChhHHHHHHHhhhhhhccCCCCCCCCCCcccCCCCCCccccccc
Q 048801 844 RNLDERDGSASGSNRTKKSKNSQKALKKKSSKAKLLRPQRVAARNARSMFSRITGTSTGEDDSDSEYNSSNSDTVLQDSH 923 (1715)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (1715)
++.+++.+..+|+++++.+.+..|+++++++..+|+|+++|||+..+++|++++.+.+. ++.++..|+..
T Consensus 576 ---seldg~isq~krt~n~r~g~k~s~~~hg~s~ss~~~R~~~Rn~~~~isk~sg~~~~~~s-------g~~e~~~q~~~ 645 (1113)
T KOG0644|consen 576 ---SELDGMISQLKRTQNQRMGAKQSKRKHGLSKSSRPPRAAARNASSDISKISGISLDRKS-------GQVEGVTQMHQ 645 (1113)
T ss_pred ---hhhhhhhhhhhhhhccccccchhhccCCCCccccCCcccccccchhhccCCCccccccc-------cCCccchhhcc
Confidence 55667777777777788888999999999999999999999999999999988876552 22232333222
Q ss_pred cccccchhhhHHHHHhhcccchhhhhhhcccCCCchhhccccccCCcceEEEEEeccccccccccccccccCCccCCCCC
Q 048801 924 VQSKEDDRNLQNMQQQHKREEEQTIVESEFMGKPLELLESQSDTGNRKRLVLKLSLRDHKKALSLEDTRVKGDDMAKLPQ 1003 (1715)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1003 (1715)
++|.+..+++.|....++ + ...-.++.+
T Consensus 646 -------------------------------~~p~eq~~~~~~~~~wR~---e------------------~~vce~leg 673 (1113)
T KOG0644|consen 646 -------------------------------NAPSEQIATLRTLQAWRR---E------------------VVVCEELEG 673 (1113)
T ss_pred -------------------------------CCCHHHHhhhhHHHHhhc---c------------------cCccccccc
Confidence 223333333221111100 0 000011100
Q ss_pred CCCCCCCCCcccccccccCCCCCCCCCCCCcccccccccceeeccCCCccccchhhhcccccccccccccceecccccCc
Q 048801 1004 SSSGPPQGTTERKIDLSLKEPGSSSAGSGIDVGLSQKHNRIVFADGSQDEKYDSQLEESAGDMENKTRWAEVKIRTSKRS 1083 (1715)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1083 (1715)
+.+.. + +- ++ +++...+++=|-.+.|-.|
T Consensus 674 -t~pe~-e-----------d~------~~------------------------------~~dtdev~rng~kngRKrk-- 702 (1113)
T KOG0644|consen 674 -TFPEL-E-----------DE------AM------------------------------AVDTDEVERNGYKNGRKRK-- 702 (1113)
T ss_pred -cCccc-c-----------cc------cc------------------------------ccccchhhhcCCCcccccc--
Confidence 00000 0 00 00 1111111111111111000
Q ss_pred CCCCCCCCCCCCCCCCCCCcCcccccccccCCCCccccCCCCccccccccCCCccccCcchhhhhhhhHHHHhhhccccc
Q 048801 1084 SSSGVLLPPDANFDVHNDSIGDVNRCVKLENGHGKFSSNSETSCYGCVRSCSDKEKFGSDALLDLASVRKEELARHEDIK 1163 (1715)
Q Consensus 1084 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1163 (1715)
+|| ++
T Consensus 703 --------------------------~~l----~~--------------------------------------------- 707 (1113)
T KOG0644|consen 703 --------------------------LEL----RH--------------------------------------------- 707 (1113)
T ss_pred --------------------------hhc----cC---------------------------------------------
Confidence 111 00
Q ss_pred cCCCCCCCCcccCccccccccccccccccCcccccCCCCccceeecccCcCCCCCCCcccccCCccCCCCCCCCCCCCCC
Q 048801 1164 KSSSFNSTPLVDHQQNDDVHKSRNEDVGTNYRDELKENPPLRVRIRTKGILRDTKSPSEQKSSTSVKDLPSAESDPIPMS 1243 (1715)
Q Consensus 1164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1715)
+..+...++++.. ++.+.+. +.+++. |. ..|.
T Consensus 708 --~~Snksd~vtlV~-------------~d~~~~~--------~~~s~a----P~-----------~~ld---------- 739 (1113)
T KOG0644|consen 708 --PLSNKSDSVTLVS-------------QDLADQS--------TCVSRA----PN-----------GGLD---------- 739 (1113)
T ss_pred --ccccccccchhhh-------------hhhhccc--------ceeeeC----Cc-----------cccc----------
Confidence 0011111111110 0111100 111111 10 0000
Q ss_pred cccccccCCCC-CCccccccccCCCCcchhccccccccceecccCcCcccccccccCCCCCCCCccCCCCCCCCcccccc
Q 048801 1244 ESSLCMEGNLM-SEVPEEAEGYGRSSSDQLLNSNLKFKVRDGSKSSYKTRTDIEAFDGGMEDGINHEASGIDSPEAASGS 1322 (1715)
Q Consensus 1244 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1322 (1715)
..+++ +-++. -..-+|.+..|.. .++--.+.+|+.++.+..+..+. ++ +.
T Consensus 740 ~lNDg-fsD~kiD~t~D~se~~gs~--------~Eis~Rndrr~eS~~~esds~SS-a~------sv------------- 790 (1113)
T KOG0644|consen 740 SLNDG-FSDVKIDLTLDCSEDSGSG--------EEISLRNDRRSESNPEESDSLSS-AY------SV------------- 790 (1113)
T ss_pred ccccc-cccccccchhhhhhcCCcc--------cceeeecchhhccCcccccchhh-hh------he-------------
Confidence 01111 00000 0000011111111 11222234555555554333221 10 00
Q ss_pred cccccccceeeeccCCccccccccccCCCccccccccccCCCCccCcCCCC--CccccCCcccccccccccCCCCCCCCC
Q 048801 1323 IRKTRSMKMKIISREPIAANCNFKSKNGHDLVGTSKTVGNSSMEAHDEFFP--EEWIPTSTVKSRPRSTRNRRGDHDGHP 1400 (1715)
Q Consensus 1323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1400 (1715)
...-+|+. .+ ..+..+......++..+++. ++|..+.+... +.|+..- .-|
T Consensus 791 ~l~dgsi~------------------~~---tsrrgRi~k~~~st~a~Lt~e~~~~p~~~~~~s-----~s~s~~~-~~p 843 (1113)
T KOG0644|consen 791 WLADGSIN------------------LQ---TSRRGRITKFCSSTEAELTTELSSPPCSQDKGS-----GSKSHKR-STP 843 (1113)
T ss_pred ecccCCcc------------------cc---ccccccccccCccchhhhhhcccCCCccccccc-----cccCccc-CCC
Confidence 00000110 00 00111112233334566666 44665555522 2222221 113
Q ss_pred ccccCCCCCCCccccccceecccCCCCcCCCCCCCeEEEEccchHHHHHhhccCCCCCCcccCC-CCCcceeEEEEeEeE
Q 048801 1401 CLLSGRKSNFPVRKLSWLMLSEHEEGYRYIPQLGDEVIYSRQGHQEFIESTGSQEVGPWWSING-YISAVETCKVVNLVY 1479 (1715)
Q Consensus 1401 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~yvPq~Gd~V~Yf~QGH~e~~~a~~~~~~~~~~~~~~-~l~~~~~c~v~~i~~ 1479 (1715)
.+++.-|+++...|+|||.+++||+++||||||||||+||||||+|||++++..++ +|+.+.+ ++.+++.|+|+.|.|
T Consensus 844 ~~~~~~~~~~~~~~~sWltls~hee~~ryipQmgDEViyfrQghqeyl~~~~~n~~-~~~~~~p~~~~~v~~~kv~kl~~ 922 (1113)
T KOG0644|consen 844 APLENMKPQQLFEKPSWLTLSIHEEGCRYIPQMGDEVIYFRQGHQEYLEAVRLNNI-ELNNKEPWNKMAVEICKVEKLVY 922 (1113)
T ss_pred ccccccchhhhcCCceeEEeehhhcCCcccccccceeehhhhhhHHHHhhhhhccc-cccccCcccccchhhheeeeeee
Confidence 34888899999999999999999999999999999999999999999999998887 5554432 699999999999999
Q ss_pred EEcCCCCCccceEEEeeeecCCcccCceEEEecCCCCCCCceEEehhhHHHHHhCCCCCCcceEEeecccCCCCCceEEE
Q 048801 1480 ATFPGSGDSCCKITLKFVDPSSSVLGKAFKLTLPELRDFPDFVVEKTLYDAAISRNWTHRDKCQIWWRNANGEGGTWWKG 1559 (1715)
Q Consensus 1480 ~~~~~s~~s~~~~~l~~~~~~~~~~~~~F~v~y~~~~~~~dFlV~~~~y~~a~~~~w~~g~rf~~~~~~e~~~~~~w~~G 1559 (1715)
..+|+|+++||||+|+||||+++++.+.|+++|++|+++|||||+|++|++|+|+||+.||+||+||+++|+.++.||+|
T Consensus 923 ~~y~~~~~s~c~m~l~~idp~s~~~~k~F~ltlpdlv~fpDFlV~rsrYd~AiQrnW~~~d~crvwwrda~~e~g~WWeG 1002 (1113)
T KOG0644|consen 923 ITYPGSGDSCCKMKLAVIDPASKLMDKSFKLTLPDLVTFPDFLVERSRYDAAIQRNWTCRDKCRVWWRDAGEEDGAWWEG 1002 (1113)
T ss_pred eeccCCCcchheeeeeeecchhhhhhccceeecccccCcchhhhhhhhHHHHHhhccccccceeEEEccCCCcCCceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccCCCCCCCCCCceeEEEECCCCCCCCCCCccCCCCCCCCCCCCChHHHHHHhhhHHHhhhhccccchhhhhHHH
Q 048801 1560 RITKSQAKSEEFPNSPWDRYMVEYKTGDSHLHSPWEMHDPNVMWEHPEIDSESRDKLLSSFNKLEQSVSRKQDYYGIQRL 1639 (1715)
Q Consensus 1560 tI~~~~~~~p~~P~S~w~~l~V~wd~~~~~~~SpWeie~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 1639 (1715)
||.++++++|+||+|||+||.|+||+++++.|||||+++.+..
T Consensus 1003 ~ils~~pksp~fpdSpwery~v~~~~~e~~~~spwe~~~i~de------------------------------------- 1045 (1113)
T KOG0644|consen 1003 RILSVKPKSPDFPDSPWERYIVRYDNTETELHSPWEMEPIPDE------------------------------------- 1045 (1113)
T ss_pred eeeeccCCCCCCCCCcceeEEEEecCCcccccCccccCCCccc-------------------------------------
Confidence 9999999999999999999999999999999999999975521
Q ss_pred HHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1640 NEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1640 ~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
|+++||+|++|++|+.||||+|||.++|+.+||..|+.||++||..+..+.-|+..|..||++++.++
T Consensus 1046 --------~~~~fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tlpk~ 1113 (1113)
T KOG0644|consen 1046 --------VDNRFPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTLPKL 1113 (1113)
T ss_pred --------cCCCCCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999998764
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-47 Score=425.28 Aligned_cols=360 Identities=26% Similarity=0.430 Sum_probs=308.1
Q ss_pred eeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 234 k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
++...+.||.++|.|++|+|+|..||||+.|.++++||+.|..++.++++|...|.|++|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCce-EEEeCCCCCeEEEEecCCCC--cceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCC
Q 048801 314 LPDGLPI-SVLRGHTGAVTAIAFSPRPS--AIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPS 390 (1715)
Q Consensus 314 l~tg~~l-~~L~gH~~~VtsLafSPdg~--~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~ 390 (1715)
..+|+++ ..|.+|...|++|+|.|-.- ...+|++++.||.|+|||+..+.++..+
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l---------------------- 243 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL---------------------- 243 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe----------------------
Confidence 9998765 67899999999999987431 1238999999999999999887765443
Q ss_pred CCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccc
Q 048801 391 SSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470 (1715)
Q Consensus 391 ~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~ 470 (1715)
.+|...|+|+.|--+| ++.+|+.|++|++|+...+ .+...+.+|...|+.++.+.+... +.+..+.
T Consensus 244 ---sgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG---------~~~r~lkGHahwvN~lalsTdy~L-Rtgaf~~ 309 (480)
T KOG0271|consen 244 ---SGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDG---------KLCRELKGHAHWVNHLALSTDYVL-RTGAFDH 309 (480)
T ss_pred ---ccCccceEEEEEcCCc-eEEecCCCceEEEEEccch---------hHHHhhcccchheeeeeccchhhh-hcccccc
Confidence 4578889999997665 8999999999999999875 357889999999999999865311 1111000
Q ss_pred c-cccccc---------cc-cCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcc
Q 048801 471 F-KEENVP---------KF-KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQ 539 (1715)
Q Consensus 471 ~-~~~~~~---------~~-~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~ 539 (1715)
. ...... .. ...-..+..+++|+.|+++.+|+... ...++.
T Consensus 310 t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~----------------------------~kkpi~ 361 (480)
T KOG0271|consen 310 TGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFK----------------------------SKKPIT 361 (480)
T ss_pred ccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccc----------------------------cccchh
Confidence 0 000000 00 00012357899999999999997652 124667
Q ss_pred cccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC
Q 048801 540 RLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 540 ~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t 619 (1715)
++.+|..-|+.+.||||+++||+++.|..|++|+..+|+.+.+|+||-+.|+.++|+. |.++|++|+.|.+++||++.+
T Consensus 362 rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 362 RMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred hhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeee
Confidence 8889999999999999999999999999999999999999999999999999999999 889999999999999999999
Q ss_pred CceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 620 GTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 620 gk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
.+....+.+|...|.++.|+|||..+++|+.|..+++|.
T Consensus 441 kKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 441 KKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999994
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=368.57 Aligned_cols=323 Identities=21% Similarity=0.337 Sum_probs=282.6
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEE
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVr 355 (1715)
++...+.||.++|.|+.|+|+|..||+|+.|.++++||+.+..++.+.++|...|.|++|+||+. .|++|+.||+|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk---~iASG~~dg~I~ 182 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGK---KIASGSKDGSIR 182 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcc---hhhccccCCeEE
Confidence 45567889999999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-----CCCeEEEecCCCeEEEEeCCCCC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-----NGTVFVTGSSDTFARVWSACKSS 430 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-----dG~~LatGs~DG~IrVWDl~t~~ 430 (1715)
+||..+|+++-. .+.+|...|++++|.| ..++||+++.||.|+|||+..+
T Consensus 183 lwdpktg~~~g~------------------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~- 237 (480)
T KOG0271|consen 183 LWDPKTGQQIGR------------------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG- 237 (480)
T ss_pred EecCCCCCcccc------------------------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-
Confidence 999998875422 2456788999999976 6689999999999999999764
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
.++..+.+|+.+|+|+.|-..+ +|++|+.|++|++|+...+.
T Consensus 238 --------~~~~~lsgHT~~VTCvrwGG~g---------------------------liySgS~DrtIkvw~a~dG~--- 279 (480)
T KOG0271|consen 238 --------TCVRTLSGHTASVTCVRWGGEG---------------------------LIYSGSQDRTIKVWRALDGK--- 279 (480)
T ss_pred --------eEEEEeccCccceEEEEEcCCc---------------------------eEEecCCCceEEEEEccchh---
Confidence 5688999999999999998764 99999999999999987643
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC-----------CC-----------------------
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS-----------LD----------------------- 556 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS-----------PD----------------------- 556 (1715)
....+.+|...|+.+++| |.
T Consensus 280 --------------------------~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~ 333 (480)
T KOG0271|consen 280 --------------------------LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLK 333 (480)
T ss_pred --------------------------HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhc
Confidence 344455666666666655 22
Q ss_pred --CCEEEEEecCCeEEEEECCC-CceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceE
Q 048801 557 --NRFVLAAIMDCRICVWNAVD-GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKL 633 (1715)
Q Consensus 557 --G~~LaTgs~DGtI~IWDl~s-g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V 633 (1715)
+..|++|+.|+++.+|+... .+++..+.+|..-|+.+.||| +++++|+++.|..|++|+..+|+.+.+|.+|-+.|
T Consensus 334 ~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~V 412 (480)
T KOG0271|consen 334 DSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAV 412 (480)
T ss_pred cCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhcccee
Confidence 34599999999999999755 458889999999999999999 89999999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccc------cceeecCCCccEEEcCCCCeee
Q 048801 634 VDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAK------YDQFFLGDYRPLIRDSLGNVLD 691 (1715)
Q Consensus 634 ~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~~------~~~~fs~D~r~L~~d~~g~vld 691 (1715)
+.++||.|.++|++|+.|.+|.+|++.+.+...+.+ |.+-|+|||..++-.....++.
T Consensus 413 YqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~ 476 (480)
T KOG0271|consen 413 YQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLR 476 (480)
T ss_pred EEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEE
Confidence 999999999999999999999999999988776555 5667999999888766665553
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=370.46 Aligned_cols=387 Identities=21% Similarity=0.316 Sum_probs=313.0
Q ss_pred CccccccceeEEEEcC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCC--CEEEE
Q 048801 226 PSTMVQKMQNIKKLRG-HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNN--TLVAS 302 (1715)
Q Consensus 226 ~~~~~~~~k~l~~L~G-H~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg--~lLAS 302 (1715)
..+.+++.+.++.+++ |.++|.-++|+|.|..|++|+.||.|+|||+..+.+.+.|+||.+.|.++.|.|+- .+|++
T Consensus 87 rv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~s 166 (775)
T KOG0319|consen 87 RVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLAS 166 (775)
T ss_pred EEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheee
Confidence 3455667788888888 99999999999999999999999999999999999999999999999999999975 46899
Q ss_pred EeCCCeeEEEECCCCCc-eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCC-------
Q 048801 303 ASNDFVIRVWRLPDGLP-ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPP------- 374 (1715)
Q Consensus 303 GS~DGtIrVWDl~tg~~-l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~------- 374 (1715)
|..|++|++||+.+... +.++..|.+.|++++|++++. .+++++.|..|.|||+.+-+....+......
T Consensus 167 g~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~---~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~ 243 (775)
T KOG0319|consen 167 GATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL---ELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLR 243 (775)
T ss_pred cCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc---eEEEeccCcEEEEeehhhhhhhheechhhheeeEEEec
Confidence 99999999999996654 888899999999999999976 6788888888888887443322211110000
Q ss_pred --------------------------------------CCcc-----------------------------------Ccc
Q 048801 375 --------------------------------------DAIT-----------------------------------GKS 381 (1715)
Q Consensus 375 --------------------------------------~~i~-----------------------------------g~~ 381 (1715)
..+. |..
T Consensus 244 ~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~n 323 (775)
T KOG0319|consen 244 EELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYN 323 (775)
T ss_pred hhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCc
Confidence 0000 000
Q ss_pred C---------------CC-----------CCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCC
Q 048801 382 N---------------VP-----------SNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE 435 (1715)
Q Consensus 382 ~---------------~~-----------~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~ 435 (1715)
. +. .....+....+|...|.+++...+|.+|++|+.|.++++|.+..+.
T Consensus 324 dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~----- 398 (775)
T KOG0319|consen 324 DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNC----- 398 (775)
T ss_pred hhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCc-----
Confidence 0 00 0000122335667778888866788899999999999999884432
Q ss_pred CCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccc
Q 048801 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW 515 (1715)
Q Consensus 436 ~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~ 515 (1715)
....++....+|++.|.+++++..+ ...|+++|.|+++++|++...+...
T Consensus 399 ~~~~~~a~~~gH~~svgava~~~~~-------------------------asffvsvS~D~tlK~W~l~~s~~~~----- 448 (775)
T KOG0319|consen 399 SKSLCVAQANGHTNSVGAVAGSKLG-------------------------ASFFVSVSQDCTLKLWDLPKSKETA----- 448 (775)
T ss_pred chhhhhhhhcccccccceeeecccC-------------------------ccEEEEecCCceEEEecCCCccccc-----
Confidence 1234566778999999999997655 4799999999999999987411000
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEE
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDV 595 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLaf 595 (1715)
. +..-........|...|+|++++|+.++||||+.|.+.+||++..++.+.+|.||...|+++.|
T Consensus 449 --------------~-~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~F 513 (775)
T KOG0319|consen 449 --------------F-PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSF 513 (775)
T ss_pred --------------c-cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEe
Confidence 0 1111222345679999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 596 HPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 596 SP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
+| ..++++|++.|++|+||.+.++.|+++|.+|...|..+.|-.+|+.|++++.||-|+||++.++++..
T Consensus 514 s~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 514 SK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM 583 (775)
T ss_pred cc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh
Confidence 99 66899999999999999999999999999999999999999999999999999999999999999875
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-38 Score=357.41 Aligned_cols=285 Identities=26% Similarity=0.438 Sum_probs=264.9
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCC--CCEEEEEeCCCeeEEEECCC
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN--NTLVASASNDFVIRVWRLPD 316 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpD--g~lLASGS~DGtIrVWDl~t 316 (1715)
-.|-+.+|..+.|+.|+..|||||.+|.++||+..+...+.+|.||...|.++.|+|. +.-||||+.||+|++|++.+
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 3477889999999999999999999999999999999999999999999999999996 67999999999999999999
Q ss_pred CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC
Q 048801 317 GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396 (1715)
Q Consensus 317 g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h 396 (1715)
..++..|.+|...|..++|+|+|. +|+|++.|.+-++||+.++..+. ...+|
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG~---~L~TasfD~tWRlWD~~tk~ElL-------------------------~QEGH 302 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSGK---FLGTASFDSTWRLWDLETKSELL-------------------------LQEGH 302 (459)
T ss_pred CcchhhhhcchhhheeeeecCCCc---eeeecccccchhhcccccchhhH-------------------------hhccc
Confidence 999999999999999999999998 89999999999999999876432 23567
Q ss_pred CcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccc
Q 048801 397 SHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476 (1715)
Q Consensus 397 ~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~ 476 (1715)
...|.+|+|.+||.++++|+.|..-+|||++++ .++..+.+|...|.+|+|+|+|
T Consensus 303 s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg---------r~im~L~gH~k~I~~V~fsPNG---------------- 357 (459)
T KOG0272|consen 303 SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG---------RCIMFLAGHIKEILSVAFSPNG---------------- 357 (459)
T ss_pred ccccceeEecCCCceeeccCccchhheeecccC---------cEEEEecccccceeeEeECCCc----------------
Confidence 888999999999999999999999999999986 4588999999999999999998
Q ss_pred ccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-
Q 048801 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL- 555 (1715)
Q Consensus 477 ~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP- 555 (1715)
-.|+||+.|++++|||++..+ ....+.+|..-|+.|.|+|
T Consensus 358 ----------y~lATgs~Dnt~kVWDLR~r~-----------------------------~ly~ipAH~nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 358 ----------YHLATGSSDNTCKVWDLRMRS-----------------------------ELYTIPAHSNLVSQVKYSPQ 398 (459)
T ss_pred ----------eEEeecCCCCcEEEeeecccc-----------------------------cceecccccchhhheEeccc
Confidence 699999999999999998643 2445778999999999998
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 556 DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
.|.+|+|++.|++++||...++.++++|.||.+.|.+++.++ ++.+++|++.|.++++|.
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCceEEEeccCceeeecc
Confidence 889999999999999999999999999999999999999999 889999999999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=353.19 Aligned_cols=287 Identities=23% Similarity=0.298 Sum_probs=263.7
Q ss_pred cCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC
Q 048801 282 RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY 361 (1715)
Q Consensus 282 ~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t 361 (1715)
.|.+.+|..+.||.|+..|||||.+|.++||+..++..+.+|.||...|.++.|+|.... ..|++|+.||++++|++.+
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~-~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSD-LNLATASADGTVKLWKLSQ 250 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCc-cceeeeccCCceeeeccCC
Confidence 356789999999999999999999999999999999999999999999999999998422 2799999999999999876
Q ss_pred CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceee
Q 048801 362 SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHEL 441 (1715)
Q Consensus 362 g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l 441 (1715)
...+. ...+|...|..++|+|+|++|+|++.|.+-++||+.++. ++
T Consensus 251 e~~l~-------------------------~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~---------El 296 (459)
T KOG0272|consen 251 ETPLQ-------------------------DLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS---------EL 296 (459)
T ss_pred Ccchh-------------------------hhhcchhhheeeeecCCCceeeecccccchhhcccccch---------hh
Confidence 54332 234578889999999999999999999999999998853 45
Q ss_pred eeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccc
Q 048801 442 DVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHL 521 (1715)
Q Consensus 442 ~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l 521 (1715)
....||...|.+++|.++| ..++||+.|..-+|||+++++
T Consensus 297 L~QEGHs~~v~~iaf~~DG--------------------------SL~~tGGlD~~~RvWDlRtgr-------------- 336 (459)
T KOG0272|consen 297 LLQEGHSKGVFSIAFQPDG--------------------------SLAATGGLDSLGRVWDLRTGR-------------- 336 (459)
T ss_pred HhhcccccccceeEecCCC--------------------------ceeeccCccchhheeecccCc--------------
Confidence 6678999999999999998 799999999999999999855
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCc
Q 048801 522 KVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPR 601 (1715)
Q Consensus 522 ~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~ 601 (1715)
.+..+.+|...|..|+|+|+|..||||+.|++++|||++....+.++.+|.+-|+.|.|+|..+.
T Consensus 337 ---------------~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 337 ---------------CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred ---------------EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCe
Confidence 44557789999999999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 602 IAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 602 lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
+|+|+++|++++||...++.+++++.+|.+.|.++.+++||.+|++++.|.++++|.
T Consensus 402 fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 402 FLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999999999999999999999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=321.79 Aligned_cols=292 Identities=23% Similarity=0.394 Sum_probs=262.9
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
++..++|+||.+.|+++.|++|.++|+++|.||.+.|||.-|...++.+.-....|..++|+|.|+++|+|+-|+...||
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 45568899999999999999999999999999999999999998888888889999999999999999999999999999
Q ss_pred ECCCC------CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 313 RLPDG------LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 313 Dl~tg------~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
++.+. ...+.+.+|++.+.|+.|.+++ .|++++.|.++.+||+.+++.+..+
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~----~ilT~SGD~TCalWDie~g~~~~~f------------------ 182 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN----HILTGSGDMTCALWDIETGQQTQVF------------------ 182 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCCC----ceEecCCCceEEEEEcccceEEEEe------------------
Confidence 99854 3456789999999999999976 6999999999999999999865543
Q ss_pred CCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~ 465 (1715)
.+|...|.+++++| +++.|++|+.|+..+|||++.+ .+.+.+.+|...|++|.|.|+|
T Consensus 183 -------~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~---------~c~qtF~ghesDINsv~ffP~G----- 241 (343)
T KOG0286|consen 183 -------HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG---------QCVQTFEGHESDINSVRFFPSG----- 241 (343)
T ss_pred -------cCCcccEEEEecCCCCCCeEEecccccceeeeeccCc---------ceeEeecccccccceEEEccCC-----
Confidence 35788899999999 9999999999999999999875 4688999999999999999998
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
.-|++|+.|+++++||++..+.+..+. -....
T Consensus 242 ---------------------~afatGSDD~tcRlyDlRaD~~~a~ys---------------------------~~~~~ 273 (343)
T KOG0286|consen 242 ---------------------DAFATGSDDATCRLYDLRADQELAVYS---------------------------HDSII 273 (343)
T ss_pred ---------------------CeeeecCCCceeEEEeecCCcEEeeec---------------------------cCccc
Confidence 689999999999999999754322211 11234
Q ss_pred CCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
.+|++++||..|++|++|..|.++.|||.-.++.+..|.||.+.|.+|..+| ++.-|+||+.|.+|+||.
T Consensus 274 ~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 274 CGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcEEEecchhHheeecC
Confidence 5799999999999999999999999999999999999999999999999999 889999999999999994
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=341.86 Aligned_cols=518 Identities=19% Similarity=0.286 Sum_probs=372.8
Q ss_pred CCceeeeeeccccCcccccC-CCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 048801 192 ADQVHGLSLREIGGGFKKHH-RAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIW 270 (1715)
Q Consensus 192 ~d~V~~ls~~~~g~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIW 270 (1715)
...|.++.|++.|..++.+. +...++....... ..+..+.+.+++.||-..|+++.|+.|.++|++||.|.+++||
T Consensus 96 k~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~---~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~ 172 (893)
T KOG0291|consen 96 KRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIK---NEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLF 172 (893)
T ss_pred cCccceEEECCCCcEEEEEecceeEEEecCcchh---cccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEE
Confidence 45677888888886665432 1111221111111 1345677889999999999999999999999999999999999
Q ss_pred eCCCCcE--EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC-----------------------CCc-----e
Q 048801 271 SMETAFC--LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD-----------------------GLP-----I 320 (1715)
Q Consensus 271 Dl~tgk~--l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t-----------------------g~~-----l 320 (1715)
.+...+- ...+.||.+.|.++-|..+...|++.+.||.+.+|.... ++. .
T Consensus 173 ~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~ 252 (893)
T KOG0291|consen 173 GVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIF 252 (893)
T ss_pred EeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceE
Confidence 9986655 567889999999999999999999999999999997751 111 0
Q ss_pred ------EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCC-----ccCccCCC-----
Q 048801 321 ------SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDA-----ITGKSNVP----- 384 (1715)
Q Consensus 321 ------~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~-----i~g~~~~~----- 384 (1715)
.-+......|++.+|++... .|++|-..|...+|.+..-.++..+......-. ..|.+.+.
T Consensus 253 ~~k~~k~~ln~~~~kvtaa~fH~~t~---~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~kl 329 (893)
T KOG0291|consen 253 WYKTKKHYLNQNSSKVTAAAFHKGTN---LLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKL 329 (893)
T ss_pred EEEEEeeeecccccceeeeeccCCce---EEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCcc
Confidence 01122336899999999876 899999999999999987776665544322110 01211111
Q ss_pred --------CCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEE
Q 048801 385 --------SNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF 456 (1715)
Q Consensus 385 --------~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLaf 456 (1715)
..........+|...++|++++|||+++|+|+.||.|+|||...+ -++.++..|+..|+.+.|
T Consensus 330 gQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg---------fC~vTFteHts~Vt~v~f 400 (893)
T KOG0291|consen 330 GQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG---------FCFVTFTEHTSGVTAVQF 400 (893)
T ss_pred ceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc---------eEEEEeccCCCceEEEEE
Confidence 111224455778899999999999999999999999999999764 568899999999999999
Q ss_pred ccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCC
Q 048801 457 SGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536 (1715)
Q Consensus 457 spdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 536 (1715)
+..+ +.+++.+-||+|+.||+...+....+
T Consensus 401 ~~~g--------------------------~~llssSLDGtVRAwDlkRYrNfRTf------------------------ 430 (893)
T KOG0291|consen 401 TARG--------------------------NVLLSSSLDGTVRAWDLKRYRNFRTF------------------------ 430 (893)
T ss_pred EecC--------------------------CEEEEeecCCeEEeeeecccceeeee------------------------
Confidence 9876 79999999999999999864422111
Q ss_pred CcccccCCCCCeeEEEeCCCCCEEEEEecCC-eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 048801 537 PRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 537 ~~~~l~~h~~~VtslafSPDG~~LaTgs~DG-tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VW 615 (1715)
..+.+....|++..|.|.++++|+.|. .|.||++.+|+++-.|.||.++|.+++|+| .+..|++|++|.+|++|
T Consensus 431 ----t~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 431 ----TSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIW 505 (893)
T ss_pred ----cCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEE
Confidence 112234578999999999999999886 699999999999999999999999999999 77899999999999999
Q ss_pred ECCCC-ceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc------c--------------------cc
Q 048801 616 DIWEG-TPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ------K--------------------DA 668 (1715)
Q Consensus 616 Dl~tg-k~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~------k--------------------~~ 668 (1715)
|+-.. ..+.++. +...+..++|+|||+.||++.-||+|.+||+..+... + ..
T Consensus 506 ~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~ 584 (893)
T KOG0291|consen 506 DIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKT 584 (893)
T ss_pred EeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCc
Confidence 98654 3455555 5668999999999999999999999999998765332 0 11
Q ss_pred ccceeecCCCccEEEcCCCCeee---c-------cccccc-----------CcCCCCCc----ccCCC--------CCCC
Q 048801 669 KYDQFFLGDYRPLIRDSLGNVLD---Q-------ETQLVP-----------HRRNIQDP----LCDSS--------MIPY 715 (1715)
Q Consensus 669 ~~~~~fs~D~r~L~~d~~g~vld---~-------~tq~~p-----------~~~~~~~~----lvD~~--------~~p~ 715 (1715)
.....+++||..|+.....+.+. . -.+... +.+.+-.+ |+|.. .++.
T Consensus 585 Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~l 664 (893)
T KOG0291|consen 585 FTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIAL 664 (893)
T ss_pred eEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccC
Confidence 12346888998877665544211 0 111110 01111111 22220 0011
Q ss_pred CCccchhhhhh----cccccceeecCCCCeEEeeec-----cccCccCCCCCchhhhcccccCCCccccCcccCccc
Q 048801 716 EEPYQSMYQQR----RLGALGIEWRPSSIKLAIGLD-----FSLGQDYAMPPLEDLERMMEPVPEFIDPVYWEPENE 783 (1715)
Q Consensus 716 p~~~q~~~q~r----~~g~~~l~~sPdg~~lAvg~~-----~~l~~~~~~~P~~d~~~~i~~~p~~i~~~~~~p~~~ 783 (1715)
|..-..-.-.| +.-...+.|+|.|+-+|..++ ++++..+.+.| .||| ++.-|+.+..+-|++|.-
T Consensus 665 pG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl~IYsld~~~~FDP-f~LD--~~vTPe~v~~al~~qey~ 738 (893)
T KOG0291|consen 665 PGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGLLIYSLDTTILFDP-FDLD--VDVTPESVREALREQEYL 738 (893)
T ss_pred CccccCCccccccCceEEEEEEEECCCcCeeeeecccceEEEecCCceEEcc-cccc--cccCHHHHHHHHhcchHH
Confidence 11110000111 233556889999999999854 45556666777 4777 788888888887877743
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=347.59 Aligned_cols=388 Identities=20% Similarity=0.259 Sum_probs=316.0
Q ss_pred CCCCCCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCC--EEEEEeCC
Q 048801 187 WPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGR--FVITGSDD 264 (1715)
Q Consensus 187 ~~~~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~--~LaTGS~D 264 (1715)
|-..|...+..+.|.+.|+.++ .+..+...+.|.+....+.+.|+||.+.|.++.|+|+-. .|++|..|
T Consensus 100 wKa~He~Pvi~ma~~~~g~LlA---------tggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D 170 (775)
T KOG0319|consen 100 WKAIHEAPVITMAFDPTGTLLA---------TGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATD 170 (775)
T ss_pred HhhccCCCeEEEEEcCCCceEE---------eccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCC
Confidence 3334667777888877764333 344556677888999999999999999999999999765 48999999
Q ss_pred CcEEEEeCCCCc-EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCce-----------------------
Q 048801 265 RLVKIWSMETAF-CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI----------------------- 320 (1715)
Q Consensus 265 GtIrIWDl~tgk-~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l----------------------- 320 (1715)
++|++||+.+.. ++.++..|.+.|++++|++|+..+++++.|..|.|||+.+.+..
T Consensus 171 ~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~ 250 (775)
T KOG0319|consen 171 GTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKG 250 (775)
T ss_pred ceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcc
Confidence 999999998654 48888999999999999999999999999999999996320000
Q ss_pred --------------------------------------------------------------------------------
Q 048801 321 -------------------------------------------------------------------------------- 320 (1715)
Q Consensus 321 -------------------------------------------------------------------------------- 320 (1715)
T Consensus 251 ~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~ 330 (775)
T KOG0319|consen 251 EYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMK 330 (775)
T ss_pred eEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeee
Confidence
Q ss_pred ----------------------------EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCC
Q 048801 321 ----------------------------SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPK 372 (1715)
Q Consensus 321 ----------------------------~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~ 372 (1715)
..+.||+..|.++.....|. +|++|+.|.++++|.++.+....
T Consensus 331 ~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~---llat~sKD~svilWr~~~~~~~~------ 401 (775)
T KOG0319|consen 331 FLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGD---LLATGSKDKSVILWRLNNNCSKS------ 401 (775)
T ss_pred ecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCc---EEEEecCCceEEEEEecCCcchh------
Confidence 12345666677777444443 78899999999999884433211
Q ss_pred CCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCe
Q 048801 373 PPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDV 451 (1715)
Q Consensus 373 ~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V 451 (1715)
.......+|.+.|.+++++..+ .+|++++.|+++++|++...+................|...|
T Consensus 402 ---------------~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdI 466 (775)
T KOG0319|consen 402 ---------------LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDI 466 (775)
T ss_pred ---------------hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccc
Confidence 1122335678889999998766 689999999999999998733222211112223456799999
Q ss_pred eEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCC
Q 048801 452 NYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531 (1715)
Q Consensus 452 ~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~ 531 (1715)
+|++++|+. ..|+|||.|.+.+||++...
T Consensus 467 N~Vaia~nd--------------------------kLiAT~SqDktaKiW~le~~------------------------- 495 (775)
T KOG0319|consen 467 NCVAIAPND--------------------------KLIATGSQDKTAKIWDLEQL------------------------- 495 (775)
T ss_pred cceEecCCC--------------------------ceEEecccccceeeecccCc-------------------------
Confidence 999999985 79999999999999998742
Q ss_pred CCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCc
Q 048801 532 PPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGR 611 (1715)
Q Consensus 532 ~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGt 611 (1715)
.....+.+|..+|.++.|++..+.|+|++.|++|+||.+.+..++++|.||...|..+.|-. ++..|+|++.||.
T Consensus 496 ----~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qliS~~adGl 570 (775)
T KOG0319|consen 496 ----RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLISAGADGL 570 (775)
T ss_pred ----eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEEeccCCCc
Confidence 23456789999999999999999999999999999999999999999999999999999988 7788889999999
Q ss_pred EEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 612 TIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 612 I~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
|+||++.+++|+.++..|...|++++.+|.+..+++|+.||.|.+|.-.+.+
T Consensus 571 iKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 571 IKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred EEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence 9999999999999999999999999999999999999999999999865543
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=321.52 Aligned_cols=327 Identities=24% Similarity=0.455 Sum_probs=280.4
Q ss_pred EEEcCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCC--Cc--EEEEec------C----CCCCeEEEEECCCCCEEE
Q 048801 237 KKLRGHRDAVYCAIFDRSGR-FVITGSDDRLVKIWSMET--AF--CLASCR------G----HEGDITDLAVSSNNTLVA 301 (1715)
Q Consensus 237 ~~L~GH~~~Vt~VafSpDG~-~LaTGS~DGtIrIWDl~t--gk--~l~tL~------g----Hs~~VtsLafSpDg~lLA 301 (1715)
+.+. |...|.+++|.|-.. .+++|+.|-+.++|++.. .. ....|+ + ....|++++|+.+|.+||
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 3444 999999999999665 899999999999999864 11 111111 1 245899999999999999
Q ss_pred EEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCcc
Q 048801 302 SASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKS 381 (1715)
Q Consensus 302 SGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~ 381 (1715)
+|+.||.++||+. +|..+.+|..|.++|.+|.|+..+. +|++++.|+++.+||..++.....+.+
T Consensus 252 tG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~---yilS~~vD~ttilwd~~~g~~~q~f~~----------- 316 (524)
T KOG0273|consen 252 TGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGT---YILSGGVDGTTILWDAHTGTVKQQFEF----------- 316 (524)
T ss_pred EeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCC---EEEeccCCccEEEEeccCceEEEeeee-----------
Confidence 9999999999995 6888999999999999999999998 999999999999999988876555433
Q ss_pred CCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcc
Q 048801 382 NVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAV 461 (1715)
Q Consensus 382 ~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~ 461 (1715)
|...-..+.|-.+ ..|++.+.||.|+|+.+... .++.++.+|.+.|.++.|.|.+
T Consensus 317 --------------~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~---------~P~~t~~GH~g~V~alk~n~tg- 371 (524)
T KOG0273|consen 317 --------------HSAPALDVDWQSN-DEFATSSTDGCIHVCKVGED---------RPVKTFIGHHGEVNALKWNPTG- 371 (524)
T ss_pred --------------ccCCccceEEecC-ceEeecCCCceEEEEEecCC---------CcceeeecccCceEEEEECCCC-
Confidence 2222355677644 46888999999999998642 4577889999999999999987
Q ss_pred cccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL 541 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l 541 (1715)
.+|++++.|++++||.... ......+
T Consensus 372 -------------------------~LLaS~SdD~TlkiWs~~~-----------------------------~~~~~~l 397 (524)
T KOG0273|consen 372 -------------------------SLLASCSDDGTLKIWSMGQ-----------------------------SNSVHDL 397 (524)
T ss_pred -------------------------ceEEEecCCCeeEeeecCC-----------------------------Ccchhhh
Confidence 7999999999999998764 2344567
Q ss_pred cCCCCCeeEEEeCCCC---------CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 048801 542 LPTPRGVNMIVWSLDN---------RFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRT 612 (1715)
Q Consensus 542 ~~h~~~VtslafSPDG---------~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI 612 (1715)
..|...|..+.|+|.| ..|++++.|++|++||+..|.++++|..|..+|++|+|+| +++++|+|+.||.|
T Consensus 398 ~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V 476 (524)
T KOG0273|consen 398 QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCV 476 (524)
T ss_pred hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCCCCee
Confidence 7888899999999964 4799999999999999999999999999999999999999 88999999999999
Q ss_pred EEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 613 IVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 613 ~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
.||++.+++.++.+. ..+.|..++|+.+|.+|.++-.||.+.+.|+.
T Consensus 477 ~iws~~~~~l~~s~~-~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 477 HIWSTKTGKLVKSYQ-GTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EeccccchheeEeec-CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999998 56679999999999999999999999999873
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-32 Score=314.41 Aligned_cols=387 Identities=17% Similarity=0.210 Sum_probs=306.5
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeE
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGR-FVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIR 310 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~-~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIr 310 (1715)
+..-+..|.||...|+++.|-|... +++|||+|++|.+|+-...+...+++.|..-|.|+.|+|||.++|+++.||.|.
T Consensus 136 SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 136 SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIY 215 (603)
T ss_pred CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEE
Confidence 4556777899999999999998765 699999999999999887788889999999999999999999999999999999
Q ss_pred EEECCCCCceEEEe---CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCc----------
Q 048801 311 VWRLPDGLPISVLR---GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAI---------- 377 (1715)
Q Consensus 311 VWDl~tg~~l~~L~---gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i---------- 377 (1715)
|||-.+|+.+..|. +|.+.|.+|+|+||+. .|++++.|.+++|||+.+..++.++.+.......
T Consensus 216 iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~---~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~ 292 (603)
T KOG0318|consen 216 IYDGKTGEKVGELEDSDAHKGSIFALSWSPDST---QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDH 292 (603)
T ss_pred EEcCCCccEEEEecCCCCccccEEEEEECCCCc---eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCe
Confidence 99999999999998 8999999999999998 8999999999999999999988887665542110
Q ss_pred ------cCccC--CCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC
Q 048801 378 ------TGKSN--VPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN 449 (1715)
Q Consensus 378 ------~g~~~--~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~ 449 (1715)
.|... .+....+.....+|...|++++.++++.+|.+|+.||.|.-|+..++... ...-.+|..
T Consensus 293 lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~--------~~~g~~h~n 364 (603)
T KOG0318|consen 293 LITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD--------RLAGKGHTN 364 (603)
T ss_pred EEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc--------ccccccccc
Confidence 01111 11222345667789999999999999999999999999999999876421 111267999
Q ss_pred CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCC
Q 048801 450 DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLP 529 (1715)
Q Consensus 450 ~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~ 529 (1715)
.|.+++.+.. ..+++++.|.++++.++........ ..+.+..+|..
T Consensus 365 qI~~~~~~~~---------------------------~~~~t~g~Dd~l~~~~~~~~~~t~~-------~~~~lg~QP~~ 410 (603)
T KOG0318|consen 365 QIKGMAASES---------------------------GELFTIGWDDTLRVISLKDNGYTKS-------EVVKLGSQPKG 410 (603)
T ss_pred eEEEEeecCC---------------------------CcEEEEecCCeEEEEecccCccccc-------ceeecCCCcee
Confidence 9999988764 4788999999999987754321111 00111111111
Q ss_pred CCCCCC-----------------CCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceE--EEEecCCCCe
Q 048801 530 PQPPRG-----------------GPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLV--HSLTGHSASS 590 (1715)
Q Consensus 530 ~~~~~g-----------------~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l--~tL~gH~~~V 590 (1715)
...... ..............+++++|++..+++|+.|+.|+||.+..+.+. ..+..|.++|
T Consensus 411 lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~i 490 (603)
T KOG0318|consen 411 LAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAI 490 (603)
T ss_pred EEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCc
Confidence 100000 011111223445788999999999999999999999999876643 3567899999
Q ss_pred EEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEE-EEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Q 048801 591 YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI-YEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGES 664 (1715)
Q Consensus 591 ~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t-l~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~ 664 (1715)
+++++|| ++.+||+|...+.|.+||+.+.+.... +.-|...|.+++|||+..+||+|+-|-.|.||++.....
T Consensus 491 T~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 491 TDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred eEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh
Confidence 9999999 889999999999999999998876433 334889999999999999999999999999999976543
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=299.99 Aligned_cols=295 Identities=23% Similarity=0.307 Sum_probs=244.5
Q ss_pred cceeEEEEcCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCC-----CCcEEEEecCCCCCeEEEEECCCCCEEEEEeC
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRS-GRFVITGSDDRLVKIWSME-----TAFCLASCRGHEGDITDLAVSSNNTLVASASN 305 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpD-G~~LaTGS~DGtIrIWDl~-----tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~ 305 (1715)
.+.+..+|+||.+.|+.++..+. -..|++++.|.+|.+|++. .|..++.+.||...|..++.++||++.++++.
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccc
Confidence 35567789999999999999886 4688999999999999874 57889999999999999999999999999999
Q ss_pred CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 306 DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 306 DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
|+++++||+.+|+..+.|.+|...|.+++|++++. .+++|+.|.+|.+|++....
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~---qivSGSrDkTiklwnt~g~c---------------------- 138 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR---QIVSGSRDKTIKLWNTLGVC---------------------- 138 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCceEEEEecCCCc---eeecCCCcceeeeeeecccE----------------------
Confidence 99999999999999999999999999999999988 89999999999999975321
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~ 465 (1715)
.++-..+ .+.+.|.|+.|+|+..
T Consensus 139 --------------------------k~t~~~~---------------------------~~~~WVscvrfsP~~~---- 161 (315)
T KOG0279|consen 139 --------------------------KYTIHED---------------------------SHREWVSCVRFSPNES---- 161 (315)
T ss_pred --------------------------EEEEecC---------------------------CCcCcEEEEEEcCCCC----
Confidence 1111110 1245677777777531
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
...|++++.|++|++||+++.+ ....+.+|.
T Consensus 162 --------------------~p~Ivs~s~DktvKvWnl~~~~-----------------------------l~~~~~gh~ 192 (315)
T KOG0279|consen 162 --------------------NPIIVSASWDKTVKVWNLRNCQ-----------------------------LRTTFIGHS 192 (315)
T ss_pred --------------------CcEEEEccCCceEEEEccCCcc-----------------------------hhhcccccc
Confidence 2477788888888888877532 234567789
Q ss_pred CCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI 625 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t 625 (1715)
+.++.+++||||.++++|+.||.+.+||+..++.+..+. |...|.+++|+| +...| ++..+-.|+|||+.++.++..
T Consensus 193 ~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fsp-nrywL-~~at~~sIkIwdl~~~~~v~~ 269 (315)
T KOG0279|consen 193 GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSP-NRYWL-CAATATSIKIWDLESKAVVEE 269 (315)
T ss_pred ccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecC-CceeE-eeccCCceEEEeccchhhhhh
Confidence 999999999999999999999999999999999988775 788899999999 54444 455666799999999988877
Q ss_pred EEcc---------cceEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 626 YEIG---------RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 626 l~~h---------~~~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
+... .....+++||+||..|++|..|+.|++|.+.
T Consensus 270 l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 270 LKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 6521 2235578999999999999999999999975
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=310.94 Aligned_cols=441 Identities=18% Similarity=0.284 Sum_probs=319.6
Q ss_pred ccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-cE-EEEecCCCCCeEEEEECCCCCEEEEEeCC--
Q 048801 231 QKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA-FC-LASCRGHEGDITDLAVSSNNTLVASASND-- 306 (1715)
Q Consensus 231 ~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg-k~-l~tL~gHs~~VtsLafSpDg~lLASGS~D-- 306 (1715)
........+..|...|+-..|+|.|-|+|+|...|.|+|||.... .. ...++--.++|.+|+|+.|++.|++.+..
T Consensus 47 ~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGre 126 (603)
T KOG0318|consen 47 DNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRE 126 (603)
T ss_pred CCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcc
Confidence 344456778899999999999999999999999999999998653 22 23466778999999999999998887653
Q ss_pred CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
...+++-+++|..+..+.||...|++++|-|..+ +.+++|+.|++|.+|+=.--++
T Consensus 127 rfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRP--fRi~T~sdDn~v~ffeGPPFKF---------------------- 182 (603)
T KOG0318|consen 127 RFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRP--FRIATGSDDNTVAFFEGPPFKF---------------------- 182 (603)
T ss_pred ceeEEEEecCCCccceeeccceeEeeeeccCCCc--eEEEeccCCCeEEEeeCCCeee----------------------
Confidence 3333444447888999999999999999999876 4899999999999996321111
Q ss_pred CCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSA 466 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~ 466 (1715)
......|..-|.|+.|+|||.+|++++.||.|.+||-.++.. ...+..-.+|.+.|.+|+|+|++
T Consensus 183 ---k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~------vg~l~~~~aHkGsIfalsWsPDs------ 247 (603)
T KOG0318|consen 183 ---KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK------VGELEDSDAHKGSIFALSWSPDS------ 247 (603)
T ss_pred ---eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE------EEEecCCCCccccEEEEEECCCC------
Confidence 122345677799999999999999999999999999988643 22222234899999999999997
Q ss_pred ccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccc------------cccc--ccccCCCCCCCCCC
Q 048801 467 MSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGR------------WTRA--YHLKVPPPPLPPQP 532 (1715)
Q Consensus 467 ~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~------------~~~~--~~l~~~~~~~~~~~ 532 (1715)
..|+|++.|.+++|||+.+..+..+... |... ..+.+........+
T Consensus 248 --------------------~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~ 307 (603)
T KOG0318|consen 248 --------------------TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNP 307 (603)
T ss_pred --------------------ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecc
Confidence 7999999999999999998765433211 1111 11111111111122
Q ss_pred CCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceE-------------------------------E
Q 048801 533 PRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLV-------------------------------H 581 (1715)
Q Consensus 533 ~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l-------------------------------~ 581 (1715)
....+...+.+|...|+++..++|+.+|++|+.||.|.-|+..+|..- +
T Consensus 308 ~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~ 387 (603)
T KOG0318|consen 308 SDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLR 387 (603)
T ss_pred cCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEE
Confidence 233467788899999999999999999999999999999998764310 0
Q ss_pred E------------------------------------------EecCC--------CCeEEEEEccCCCcEEEEEeCCCc
Q 048801 582 S------------------------------------------LTGHS--------ASSYVLDVHPFNPRIAMSAGYDGR 611 (1715)
Q Consensus 582 t------------------------------------------L~gH~--------~~V~sLafSP~dg~lLaSgs~DGt 611 (1715)
. |+.+. -...+++++| ++..++.|+.||.
T Consensus 388 ~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgk 466 (603)
T KOG0318|consen 388 VISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGK 466 (603)
T ss_pred EEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccce
Confidence 0 00010 1224677888 7889999999999
Q ss_pred EEEEECCCCce--EEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccccceeecCCCccEEEcCCCCe
Q 048801 612 TIVWDIWEGTP--IRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKYDQFFLGDYRPLIRDSLGNV 689 (1715)
Q Consensus 612 I~VWDl~tgk~--l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~~~~~~fs~D~r~L~~d~~g~v 689 (1715)
|+||.+..+.. ...+..|.++|++++|||||.+||+|+..+.+.+|++.+.+... ..-.|+
T Consensus 467 vhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~---~~w~FH-------------- 529 (603)
T KOG0318|consen 467 VHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT---NRWAFH-------------- 529 (603)
T ss_pred EEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec---ceeeee--------------
Confidence 99999976543 33455699999999999999999999999999999998875310 000111
Q ss_pred eecccccccCcCCCCCcccCCCCCCCCCccchhhhhhcccccceeecCCCCeEEeeeccccCccC---CCCCchhhhccc
Q 048801 690 LDQETQLVPHRRNIQDPLCDSSMIPYEEPYQSMYQQRRLGALGIEWRPSSIKLAIGLDFSLGQDY---AMPPLEDLERMM 766 (1715)
Q Consensus 690 ld~~tq~~p~~~~~~~~lvD~~~~p~p~~~q~~~q~r~~g~~~l~~sPdg~~lAvg~~~~l~~~~---~~~P~~d~~~~i 766 (1715)
. -....++|+|+...+|.| +|+.-+ .|.-.+..=-+-
T Consensus 530 ----------t---------------------------akI~~~aWsP~n~~vATG---SlDt~Viiysv~kP~~~i~ik 569 (603)
T KOG0318|consen 530 ----------T---------------------------AKINCVAWSPNNKLVATG---SLDTNVIIYSVKKPAKHIIIK 569 (603)
T ss_pred ----------e---------------------------eeEEEEEeCCCceEEEec---cccceEEEEEccChhhheEec
Confidence 0 012358999999999998 222221 122111110112
Q ss_pred ccCCCccccCcccCccccccCC
Q 048801 767 EPVPEFIDPVYWEPENEVISDD 788 (1715)
Q Consensus 767 ~~~p~~i~~~~~~p~~~~~~~~ 788 (1715)
-..+..+..+.|..|.++++.-
T Consensus 570 nAH~~gVn~v~wlde~tvvSsG 591 (603)
T KOG0318|consen 570 NAHLGGVNSVAWLDESTVVSSG 591 (603)
T ss_pred cccccCceeEEEecCceEEecc
Confidence 2345558899999999888743
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=295.87 Aligned_cols=294 Identities=18% Similarity=0.227 Sum_probs=263.2
Q ss_pred EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEE
Q 048801 278 LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIW 357 (1715)
.++|+||.+.|.++.|++|.++|++++.||.+.|||.-+...+..+.-....|..++|+|.+. ++++|+.|+.+.||
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~---~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGN---FVACGGLDNKCSIY 124 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCC---eEEecCcCceeEEE
Confidence 378999999999999999999999999999999999999999999988899999999999998 89999999999999
Q ss_pred ecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCC
Q 048801 358 DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQP 437 (1715)
Q Consensus 358 Dl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~ 437 (1715)
++.+..... .........+|.+.+.|+.|..| ..|+|++.|.++.+||+.++
T Consensus 125 ~ls~~d~~g-------------------~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g-------- 176 (343)
T KOG0286|consen 125 PLSTRDAEG-------------------NVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETG-------- 176 (343)
T ss_pred ecccccccc-------------------cceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccc--------
Confidence 997542110 01112335678889999999985 56899999999999999985
Q ss_pred ceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccc
Q 048801 438 IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTR 517 (1715)
Q Consensus 438 ~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~ 517 (1715)
..+..+.+|.+.|.+|.++|.. .+.+++|+.|+..++||++.
T Consensus 177 -~~~~~f~GH~gDV~slsl~p~~-------------------------~ntFvSg~cD~~aklWD~R~------------ 218 (343)
T KOG0286|consen 177 -QQTQVFHGHTGDVMSLSLSPSD-------------------------GNTFVSGGCDKSAKLWDVRS------------ 218 (343)
T ss_pred -eEEEEecCCcccEEEEecCCCC-------------------------CCeEEecccccceeeeeccC------------
Confidence 4578899999999999999943 38999999999999999996
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec--CCCCeEEEEE
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG--HSASSYVLDV 595 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g--H~~~V~sLaf 595 (1715)
+..++.+.+|...|+++.|.|+|.-+++|+.|++.++||++..+.+..+.. -..+|++++|
T Consensus 219 -----------------~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~F 281 (343)
T KOG0286|consen 219 -----------------GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAF 281 (343)
T ss_pred -----------------cceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEE
Confidence 346678899999999999999999999999999999999999999988863 3467999999
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 596 HPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 596 SP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
|. .+++|.+|..|.++.|||.-.++.+..+.+|...|.++..+|||.-|++|+.|..|+||.
T Consensus 282 S~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 282 SK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 98 889999999999999999999999999999999999999999999999999999999994
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=318.33 Aligned_cols=376 Identities=18% Similarity=0.270 Sum_probs=293.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--------cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEEC
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA--------FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL 314 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg--------k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl 314 (1715)
..+|.|+.|||+|+++|.|.. +.+.||..... ...+++.||-..|++|.|+.|.++|++||.|.+++||++
T Consensus 96 k~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v 174 (893)
T KOG0291|consen 96 KRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGV 174 (893)
T ss_pred cCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEe
Confidence 578999999999999998864 68999986422 345678899999999999999999999999999999999
Q ss_pred CCCCc--eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCC-CCC----
Q 048801 315 PDGLP--ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP-SNN---- 387 (1715)
Q Consensus 315 ~tg~~--l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~-~~~---- 387 (1715)
...+- ...+.+|.+.|.+.-|..+.. .|++.+.||.+.+|.....-... ....+............ ...
T Consensus 175 ~~~k~~~~~~l~gHkd~VvacfF~~~~~---~l~tvskdG~l~~W~~~~~P~~~-~~~~kd~eg~~d~~~~~~~Eek~~~ 250 (893)
T KOG0291|consen 175 DGNKNLFTYALNGHKDYVVACFFGANSL---DLYTVSKDGALFVWTCDLRPPEL-DKAEKDEEGSDDEEMDEDGEEKTHK 250 (893)
T ss_pred ccccccceEeccCCCcceEEEEeccCcc---eEEEEecCceEEEEEecCCCccc-ccccccccccccccccccchhhhcc
Confidence 87655 667789999999999999876 79999999999999876320000 00000000000000000 000
Q ss_pred -----CCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccc
Q 048801 388 -----GPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVA 462 (1715)
Q Consensus 388 -----~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~a 462 (1715)
............|+|++|++.-+.||+|-..|...+|.+.. ...++.+.-...+|..++|+..|
T Consensus 251 ~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~---------f~lih~LSis~~~I~t~~~N~tG-- 319 (893)
T KOG0291|consen 251 IFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD---------FNLIHSLSISDQKILTVSFNSTG-- 319 (893)
T ss_pred eEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC---------ceEEEEeecccceeeEEEecccC--
Confidence 00111122236799999999999999999999999999976 34567777777889999999766
Q ss_pred ccccccccccccccccccCCcccCceEEEEcCC-CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc
Q 048801 463 SRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD-GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL 541 (1715)
Q Consensus 463 s~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D-GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l 541 (1715)
+.|+.|+.. |.+.||+..+.. -+...
T Consensus 320 ------------------------DWiA~g~~klgQLlVweWqsEs-----------------------------YVlKQ 346 (893)
T KOG0291|consen 320 ------------------------DWIAFGCSKLGQLLVWEWQSES-----------------------------YVLKQ 346 (893)
T ss_pred ------------------------CEEEEcCCccceEEEEEeeccc-----------------------------eeeec
Confidence 678777654 899999887532 23456
Q ss_pred cCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC---
Q 048801 542 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW--- 618 (1715)
Q Consensus 542 ~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~--- 618 (1715)
.+|...++++++||||++||||+.||.|+|||..+|-|+.+|..|+..|+++.|+. .++.+++++.||+|+.||+.
T Consensus 347 QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 347 QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccc
Confidence 78899999999999999999999999999999999999999999999999999998 78899999999999999874
Q ss_pred -----------------------------------------CCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEE
Q 048801 619 -----------------------------------------EGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLL 657 (1715)
Q Consensus 619 -----------------------------------------tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IW 657 (1715)
+|+.+-.+.+|.++|.+++|+|+|..||+++.|.+|++|
T Consensus 426 NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 426 NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIW 505 (893)
T ss_pred eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEE
Confidence 344455556899999999999999999999999999999
Q ss_pred ECCCC--c--cc--cccccceeecCCCccEEEcC-CCC
Q 048801 658 NTGQG--E--SQ--KDAKYDQFFLGDYRPLIRDS-LGN 688 (1715)
Q Consensus 658 dl~tG--e--~~--k~~~~~~~fs~D~r~L~~d~-~g~ 688 (1715)
++-.. + .+ ..-...+.|.|||+.|+... +|.
T Consensus 506 ~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgq 543 (893)
T KOG0291|consen 506 DIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQ 543 (893)
T ss_pred EeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecce
Confidence 98543 1 11 12235568999999999754 344
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=288.67 Aligned_cols=295 Identities=19% Similarity=0.357 Sum_probs=255.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC--ceEEEeCCCCCeEEE
Q 048801 256 RFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL--PISVLRGHTGAVTAI 333 (1715)
Q Consensus 256 ~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~--~l~~L~gH~~~VtsL 333 (1715)
-+|+|+|.|.+|++|...+|.+.++++...+.|+.+.+.||+++||+|+.- .|++||+.++. ++.++.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEE
Confidence 489999999999999999999999999888999999999999999999875 79999998874 689999999999999
Q ss_pred EecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEE
Q 048801 334 AFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFV 413 (1715)
Q Consensus 334 afSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~La 413 (1715)
.|..+++ .+++|+.||+++|||++...+.+.+ .+...|+++..+|+...|+
T Consensus 90 gF~~dgr---WMyTgseDgt~kIWdlR~~~~qR~~--------------------------~~~spVn~vvlhpnQteLi 140 (311)
T KOG0315|consen 90 GFQCDGR---WMYTGSEDGTVKIWDLRSLSCQRNY--------------------------QHNSPVNTVVLHPNQTELI 140 (311)
T ss_pred EEeecCe---EEEecCCCceEEEEeccCcccchhc--------------------------cCCCCcceEEecCCcceEE
Confidence 9999998 8999999999999999875433322 2356799999999999999
Q ss_pred EecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEc
Q 048801 414 TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS 493 (1715)
Q Consensus 414 tGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS 493 (1715)
+|..+|.|+|||+....+.. .........|.++...|+| .+++.+.
T Consensus 141 s~dqsg~irvWDl~~~~c~~--------~liPe~~~~i~sl~v~~dg--------------------------sml~a~n 186 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLGENSCTH--------ELIPEDDTSIQSLTVMPDG--------------------------SMLAAAN 186 (311)
T ss_pred eecCCCcEEEEEccCCcccc--------ccCCCCCcceeeEEEcCCC--------------------------cEEEEec
Confidence 99999999999998753311 1122334589999999987 7999999
Q ss_pred CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEE
Q 048801 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 573 (1715)
Q Consensus 494 ~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWD 573 (1715)
..|...+|++-+..... .-.++..+..|.+-|..+.+|||+++||+++.|.+++||+
T Consensus 187 nkG~cyvW~l~~~~~~s-----------------------~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn 243 (311)
T KOG0315|consen 187 NKGNCYVWRLLNHQTAS-----------------------ELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN 243 (311)
T ss_pred CCccEEEEEccCCCccc-----------------------cceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEe
Confidence 99999999987533111 1234566888999999999999999999999999999999
Q ss_pred CCCC-ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEE
Q 048801 574 AVDG-SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKF 638 (1715)
Q Consensus 574 l~sg-~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svaf 638 (1715)
+.+. +.-..+.+|...++..+||. ++.+|+||+.|+.+++|++..++.++.+.+|.....+++.
T Consensus 244 ~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 244 TDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred cCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 9887 66678899999999999999 8899999999999999999999999999999888877765
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=300.07 Aligned_cols=339 Identities=18% Similarity=0.254 Sum_probs=280.9
Q ss_pred eEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEEC
Q 048801 235 NIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL 314 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl 314 (1715)
-+.+|..|++.|++|+.+|+.++++|||.|..-.||++.+|..+..+.+|...|+++.||.||.+||||+.+|.|+||..
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 315 PDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 315 ~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
.++.....+...-..|.-|.|+|... .|+.|+.||.|.+|.+........ ..
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~---illAG~~DGsvWmw~ip~~~~~kv-------------------------~~ 187 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAH---ILLAGSTDGSVWMWQIPSQALCKV-------------------------MS 187 (399)
T ss_pred ccCceEEEeecccCceEEEEeccccc---EEEeecCCCcEEEEECCCcceeeE-------------------------ec
Confidence 99999988877778899999999876 899999999999999976533222 23
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecC-CCCCeeEEEEccCcccccccccccccc
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG-HENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g-H~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
+|...++|-.|.|+|+.+++|..||+|++|+..++. + +..+.+ ......++.++..+
T Consensus 188 Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~------p---~~~~~~~e~~~~~~~~~~~~~------------- 245 (399)
T KOG0296|consen 188 GHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ------P---LHKITQAEGLELPCISLNLAG------------- 245 (399)
T ss_pred CCCCCcccccccCCCceEEEEecCceEEEEecCCCc------e---eEEecccccCcCCcccccccc-------------
Confidence 467889999999999999999999999999998863 2 222221 12345566665544
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC---CeeE
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR---GVNM 550 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~---~Vts 550 (1715)
..++.|+.++.+.+-+..+++.+...... .......+.. .|..
T Consensus 246 -------------~~~~~g~~e~~~~~~~~~sgKVv~~~n~~---------------------~~~l~~~~e~~~esve~ 291 (399)
T KOG0296|consen 246 -------------STLTKGNSEGVACGVNNGSGKVVNCNNGT---------------------VPELKPSQEELDESVES 291 (399)
T ss_pred -------------ceeEeccCCccEEEEccccceEEEecCCC---------------------Cccccccchhhhhhhhh
Confidence 67888999999998887776644322110 0000111222 3455
Q ss_pred EEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEccc
Q 048801 551 IVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGR 630 (1715)
Q Consensus 551 lafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~ 630 (1715)
+.|+..=.+.|+|+.||+|.|||+...++.+.+. |..+|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.+|.
T Consensus 292 ~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~ 368 (399)
T KOG0296|consen 292 IPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQ 368 (399)
T ss_pred cccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCc
Confidence 5566667788999999999999998877766664 888899999977 4677889999999999999999999999999
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 631 FKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 631 ~~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
.+|.+++++|+++++++++.|+..+||++.
T Consensus 369 ~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 369 MGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred hheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999999999999863
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=306.34 Aligned_cols=308 Identities=22% Similarity=0.326 Sum_probs=274.4
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEE
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRV 311 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrV 311 (1715)
...+.+.+.||..+|+.+.|+|+-..+++++.|++|++||..+|++...|+||...|.+|+|+..|++||+++.|-.+.+
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred EECCC-CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCC
Q 048801 312 WRLPD-GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPS 390 (1715)
Q Consensus 312 WDl~t-g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~ 390 (1715)
||..+ .++++.+.+|...|.+++|-|.+. +|++++.|.+|+.|++.++-++.++
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd---~ilS~srD~tik~We~~tg~cv~t~---------------------- 231 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGD---HILSCSRDNTIKAWECDTGYCVKTF---------------------- 231 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCC---eeeecccccceeEEecccceeEEec----------------------
Confidence 99987 577888899999999999999987 8999999999999999999877654
Q ss_pred CCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccc
Q 048801 391 SSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470 (1715)
Q Consensus 391 ~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~ 470 (1715)
.+|...|..+..+.||.++++++.|.+|++|-+.+.. +...+..|+-+|.|++|.|.....
T Consensus 232 ---~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~---------~k~~lR~hEh~vEci~wap~~~~~------- 292 (406)
T KOG0295|consen 232 ---PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ---------CKAELREHEHPVECIAWAPESSYP------- 292 (406)
T ss_pred ---cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch---------hhhhhhccccceEEEEecccccCc-------
Confidence 2356679999999999999999999999999998753 456788999999999999864100
Q ss_pred ccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeE
Q 048801 471 FKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNM 550 (1715)
Q Consensus 471 ~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vts 550 (1715)
.-..++++.
T Consensus 293 ---------------~i~~at~~~-------------------------------------------------------- 301 (406)
T KOG0295|consen 293 ---------------SISEATGST-------------------------------------------------------- 301 (406)
T ss_pred ---------------chhhccCCC--------------------------------------------------------
Confidence 000000000
Q ss_pred EEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEccc
Q 048801 551 IVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGR 630 (1715)
Q Consensus 551 lafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~ 630 (1715)
..+.++++++.|++|++||+.+|.++.+|.+|.+.|..++|+| +|++|+++..|++++|||+.+++|+.++..|.
T Consensus 302 ----~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~ 376 (406)
T KOG0295|consen 302 ----NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHE 376 (406)
T ss_pred ----CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCc
Confidence 0467899999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 631 FKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 631 ~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
.-|+++.|..+..++++|+-|..+.+|.-
T Consensus 377 hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 377 HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999999999999999999999999963
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8e-31 Score=290.11 Aligned_cols=293 Identities=23% Similarity=0.382 Sum_probs=251.2
Q ss_pred eEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 235 NIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSME-TAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~-tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
++..+.||.+.|+++.|+|+|.+|||||.|..|.+|++. .-+-...+++|.++|..+.|.+|++.|++++.|.+|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 455688999999999999999999999999999999964 4566778899999999999999999999999999999999
Q ss_pred CCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCC
Q 048801 314 LPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393 (1715)
Q Consensus 314 l~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~ 393 (1715)
+++|+.++.+++|..-|+++.-+.-+ ..++.+++.||++++||+++...+.++.
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg--~~lv~SgsdD~t~kl~D~R~k~~~~t~~------------------------ 172 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRG--PQLVCSGSDDGTLKLWDIRKKEAIKTFE------------------------ 172 (338)
T ss_pred cccceeeehhccccceeeecCccccC--CeEEEecCCCceEEEEeecccchhhccc------------------------
Confidence 99999999999999999999844444 3478899999999999999776554432
Q ss_pred CCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccc
Q 048801 394 GLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 394 ~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
...++++++|..++..+.+|+-|+.|++||++.. ..+.++.||.+.|+.+..++++
T Consensus 173 --~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~---------d~~~~lsGh~DtIt~lsls~~g------------- 228 (338)
T KOG0265|consen 173 --NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN---------DGLYTLSGHADTITGLSLSRYG------------- 228 (338)
T ss_pred --cceeEEEEEecccccceeeccccCceeeeccccC---------cceEEeecccCceeeEEeccCC-------------
Confidence 2456899999999999999999999999999864 3578999999999999999987
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC----CCee
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP----RGVN 549 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~----~~Vt 549 (1715)
..+.+-+.|.++++||++.-.. ...++..+.+|. ....
T Consensus 229 -------------s~llsnsMd~tvrvwd~rp~~p-------------------------~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 229 -------------SFLLSNSMDNTVRVWDVRPFAP-------------------------SQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred -------------CccccccccceEEEEEecccCC-------------------------CCceEEEeecchhhhhhhcc
Confidence 7899999999999999984110 011122222222 2345
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 550 MIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 550 slafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
.++|+|+++.+.+|+.|..+++||......+..+.||.+.|++++|+| ...+|.+++.|.+|++=.
T Consensus 271 ~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 271 KCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEeec
Confidence 679999999999999999999999999999999999999999999999 777888999999998743
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-30 Score=309.99 Aligned_cols=412 Identities=16% Similarity=0.254 Sum_probs=314.2
Q ss_pred ccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEE
Q 048801 224 AKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASA 303 (1715)
Q Consensus 224 ~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASG 303 (1715)
....+.......+-+|.||..+|+++.|+..|..||+||.|+.|.+||+-...-+..|+||...|+.+-|..+.++|++.
T Consensus 88 sVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~ 167 (888)
T KOG0306|consen 88 SVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSV 167 (888)
T ss_pred eEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEe
Confidence 33334444447788999999999999999999999999999999999998888889999999999999999988999999
Q ss_pred eCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCC---------------------
Q 048801 304 SNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS--------------------- 362 (1715)
Q Consensus 304 S~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg--------------------- 362 (1715)
|.|+.|++||+.+..+..+.-.|.+.|+++++.++ .+++++.|+.+++|++...
T Consensus 168 sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~-----~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rq 242 (888)
T KOG0306|consen 168 SKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEK-----LLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQ 242 (888)
T ss_pred ccCceEEEEecccceeeeEEecccceEEEEEEecc-----eEEEEecCCceEEEEeecccccccccccceeeccceeeec
Confidence 99999999999999999999999999999999983 7899999999999998110
Q ss_pred ---CCcceecC--------CCCC-----------------------------C------Ccc------------------
Q 048801 363 ---QYSPRIYL--------PKPP-----------------------------D------AIT------------------ 378 (1715)
Q Consensus 363 ---~~l~~i~~--------~~~~-----------------------------~------~i~------------------ 378 (1715)
+.+..... .... . .+.
T Consensus 243 sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~k 322 (888)
T KOG0306|consen 243 SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAK 322 (888)
T ss_pred cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhh
Confidence 00000000 0000 0 000
Q ss_pred ---------CccC---------------CCCCCCC---------CCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEe
Q 048801 379 ---------GKSN---------------VPSNNGP---------SSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWS 425 (1715)
Q Consensus 379 ---------g~~~---------------~~~~~~~---------~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWD 425 (1715)
+... ... ... .....+|...|.+++++.+...+++|+ .+.|.||+
T Consensus 323 iks~dv~~~~~~~~~lv~l~nNtv~~ysl~~-s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn 400 (888)
T KOG0306|consen 323 IKSFDVTPSGGTENTLVLLANNTVEWYSLEN-SGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWN 400 (888)
T ss_pred eeEEEEEecCCcceeEEEeecCceEEEEecc-CCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEE
Confidence 0000 000 000 133456778899999998887777765 57888998
Q ss_pred CCCCCccCCCC-------------------------------CceeeeeecCCCCCeeEEEEccCccccccccccccccc
Q 048801 426 ACKSSVEDSEQ-------------------------------PIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEE 474 (1715)
Q Consensus 426 l~t~~~~~~~~-------------------------------~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~ 474 (1715)
..+.++..... ....+....+|.+.|.+++.+|++
T Consensus 401 ~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~-------------- 466 (888)
T KOG0306|consen 401 RDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN-------------- 466 (888)
T ss_pred ccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC--------------
Confidence 88766422211 012233456899999999999986
Q ss_pred ccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC
Q 048801 475 NVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS 554 (1715)
Q Consensus 475 ~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS 554 (1715)
..+++|+.|.+|++||..--... .+...+.. .-...+...-...|.|+.+|
T Consensus 467 ------------~g~vT~saDktVkfWdf~l~~~~--~gt~~k~l---------------sl~~~rtLel~ddvL~v~~S 517 (888)
T KOG0306|consen 467 ------------KGFVTGSADKTVKFWDFKLVVSV--PGTQKKVL---------------SLKHTRTLELEDDVLCVSVS 517 (888)
T ss_pred ------------CceEEecCCcEEEEEeEEEEecc--Ccccceee---------------eeccceEEeccccEEEEEEc
Confidence 78999999999999997631100 00000000 01112334456789999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEE
Q 048801 555 LDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLV 634 (1715)
Q Consensus 555 PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~ 634 (1715)
|||++||++--|.+|+||-+.+.+....|.||.-+|.|+..+| +..+++||+.|.+|+||-+.-|.|.+.+.+|...|.
T Consensus 518 pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm 596 (888)
T KOG0306|consen 518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVM 596 (888)
T ss_pred CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCcee
Confidence 9999999999999999999999999999999999999999999 889999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCccccccc------cceeecCCCccEEEcCC
Q 048801 635 DGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAK------YDQFFLGDYRPLIRDSL 686 (1715)
Q Consensus 635 svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~~------~~~~fs~D~r~L~~d~~ 686 (1715)
++.|.|....+++++.||.|+-||-..-+.++... +-...+|+|..++..++
T Consensus 597 ~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh 654 (888)
T KOG0306|consen 597 SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH 654 (888)
T ss_pred EEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccC
Confidence 99999999999999999999999976666655433 22344455554444433
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.6e-30 Score=290.85 Aligned_cols=288 Identities=31% Similarity=0.545 Sum_probs=251.3
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~ 315 (1715)
+++|.+|.+.|++++|+|++++|++++.||.|++|++.++.....+.+|...+.++.|++++++|++++.||.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 35678999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred CCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCC
Q 048801 316 DGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL 395 (1715)
Q Consensus 316 tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~ 395 (1715)
++..+..+..|...|.++.|++++. ++++++.||.|.+||+.+++....+. .
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~-------------------------~ 133 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGR---ILSSSSRDKTIKVWDVETGKCLTTLR-------------------------G 133 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCC---EEEEecCCCeEEEEECCCcEEEEEec-------------------------c
Confidence 9888999999999999999999865 77788889999999998665433321 2
Q ss_pred CCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccc
Q 048801 396 QSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 396 h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
|...|.+++|+|++.++++++.+|.|++||+.+++ .+..+..|...|.++.|++++
T Consensus 134 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~--------------- 189 (289)
T cd00200 134 HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK---------CVATLTGHTGEVNSVAFSPDG--------------- 189 (289)
T ss_pred CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc---------cceeEecCccccceEEECCCc---------------
Confidence 45569999999999999998889999999997542 345566888899999999975
Q ss_pred cccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC
Q 048801 476 VPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL 555 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP 555 (1715)
..+++++.||.|.+||+.++. ....+..+...+.+++|++
T Consensus 190 -----------~~l~~~~~~~~i~i~d~~~~~-----------------------------~~~~~~~~~~~i~~~~~~~ 229 (289)
T cd00200 190 -----------EKLLSSSSDGTIKLWDLSTGK-----------------------------CLGTLRGHENGVNSVAFSP 229 (289)
T ss_pred -----------CEEEEecCCCcEEEEECCCCc-----------------------------eecchhhcCCceEEEEEcC
Confidence 688888889999999997532 1222335666899999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 556 DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
++.++++++.++.|++|++.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++|+
T Consensus 230 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 230 DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEEEecCCCeEEecC
Confidence 999999888899999999999999999999999999999999 678889999999999996
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=286.24 Aligned_cols=288 Identities=27% Similarity=0.440 Sum_probs=251.5
Q ss_pred EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEE
Q 048801 278 LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIW 357 (1715)
+.++.+|.+.|++++|+|++.+|++++.||.|++|++.++.....+..|...+..+.|++++. +|++++.||.|++|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT---YLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCC---EEEEEcCCCeEEEE
Confidence 356778999999999999999999999999999999999988889999999999999999986 89999999999999
Q ss_pred ecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCC
Q 048801 358 DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQP 437 (1715)
Q Consensus 358 Dl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~ 437 (1715)
++.+++....+ ..+...|.+++|++++.++++++.+|.|.+|++.+.
T Consensus 79 ~~~~~~~~~~~-------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------- 125 (289)
T cd00200 79 DLETGECVRTL-------------------------TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-------- 125 (289)
T ss_pred EcCcccceEEE-------------------------eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc--------
Confidence 99876433322 123456999999999999999888999999999753
Q ss_pred ceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccc
Q 048801 438 IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTR 517 (1715)
Q Consensus 438 ~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~ 517 (1715)
.....+..|...|.++.|+|++ .++++++.||.|.+||+.+++
T Consensus 126 -~~~~~~~~~~~~i~~~~~~~~~--------------------------~~l~~~~~~~~i~i~d~~~~~---------- 168 (289)
T cd00200 126 -KCLTTLRGHTDWVNSVAFSPDG--------------------------TFVASSSQDGTIKLWDLRTGK---------- 168 (289)
T ss_pred -EEEEEeccCCCcEEEEEEcCcC--------------------------CEEEEEcCCCcEEEEEccccc----------
Confidence 3455666888999999999964 577777779999999997533
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEcc
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHP 597 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP 597 (1715)
....+..+...|.+++|+|+++.|++++.++.|++||+.+++.+..+..|...+.++.|+|
T Consensus 169 -------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 229 (289)
T cd00200 169 -------------------CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP 229 (289)
T ss_pred -------------------cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC
Confidence 1223345667899999999999999999999999999999999999989999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 598 FNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 598 ~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
++.++++++.||.|++|++.+++.+..+..|...|.+++|+|++.+|++++.||.|.+|+
T Consensus 230 -~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 230 -DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred -CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 588888888899999999999999999998888999999999999999999999999995
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=318.41 Aligned_cols=281 Identities=24% Similarity=0.391 Sum_probs=240.7
Q ss_pred eEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEEC
Q 048801 235 NIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL 314 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl 314 (1715)
+..++..-...|+|+.|++|+..||.|-.|..|++|.+... .++.+++. .. ...+=+++.|-.+.+-|-
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~-~~---------l~~~d~~sad~~~~~~D~ 438 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDA-SD---------LSNIDTESADVDVDMLDD 438 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccch-hh---------hccccccccchhhhhccc
Confidence 45556556677999999999999999999999999999755 33344421 11 112224455555777777
Q ss_pred CCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 315 PDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 315 ~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
..+....++.||.++|+.+.|+|+.+ +|++++.|++||+|.+.+..++-. ..
T Consensus 439 ~~~~~~~~L~GH~GPVyg~sFsPd~r---fLlScSED~svRLWsl~t~s~~V~-------------------------y~ 490 (707)
T KOG0263|consen 439 DSSGTSRTLYGHSGPVYGCSFSPDRR---FLLSCSEDSSVRLWSLDTWSCLVI-------------------------YK 490 (707)
T ss_pred cCCceeEEeecCCCceeeeeeccccc---ceeeccCCcceeeeecccceeEEE-------------------------ec
Confidence 77778888999999999999999998 899999999999999987654322 23
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccc
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEE 474 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~ 474 (1715)
+|..+|+++.|+|.|-+||+|+.|++.++|.... ..+++.+.+|-+.|.|+.|+|+.
T Consensus 491 GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~---------~~PlRifaghlsDV~cv~FHPNs-------------- 547 (707)
T KOG0263|consen 491 GHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH---------NKPLRIFAGHLSDVDCVSFHPNS-------------- 547 (707)
T ss_pred CCCcceeeEEecCCceEEEecCCCceeeeeeccc---------CCchhhhcccccccceEEECCcc--------------
Confidence 5788899999999999999999999999999875 35688999999999999999986
Q ss_pred ccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC
Q 048801 475 NVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS 554 (1715)
Q Consensus 475 ~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS 554 (1715)
.++++||.|.++++||+.++. .++.+.+|.++|++++||
T Consensus 548 ------------~Y~aTGSsD~tVRlWDv~~G~-----------------------------~VRiF~GH~~~V~al~~S 586 (707)
T KOG0263|consen 548 ------------NYVATGSSDRTVRLWDVSTGN-----------------------------SVRIFTGHKGPVTALAFS 586 (707)
T ss_pred ------------cccccCCCCceEEEEEcCCCc-----------------------------EEEEecCCCCceEEEEEc
Confidence 899999999999999998743 456678899999999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC
Q 048801 555 LDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 555 PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t 619 (1715)
|+|++|++|+.||.|.|||+.++.++..+.+|++.|++|.|+. ++.+||+||.|++|++||+..
T Consensus 587 p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 587 PCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999999999999999999999999999999 889999999999999999854
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-30 Score=296.62 Aligned_cols=310 Identities=24% Similarity=0.373 Sum_probs=260.0
Q ss_pred EEecCCCCCeEEEEECCCCC-EEEEEeCCCeeEEEECCC--CC--ceEEEe------C----CCCCeEEEEecCCCCcce
Q 048801 279 ASCRGHEGDITDLAVSSNNT-LVASASNDFVIRVWRLPD--GL--PISVLR------G----HTGAVTAIAFSPRPSAIY 343 (1715)
Q Consensus 279 ~tL~gHs~~VtsLafSpDg~-lLASGS~DGtIrVWDl~t--g~--~l~~L~------g----H~~~VtsLafSPdg~~~~ 343 (1715)
..+. |..+|.+.+|+|-.. +|++|+.|-+.++|++.. .. ....|+ + ....|++|+|+.+|.
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~--- 248 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT--- 248 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC---
Confidence 3344 999999999999665 999999999999999864 11 111111 1 235799999999998
Q ss_pred EEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEE
Q 048801 344 QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARV 423 (1715)
Q Consensus 344 ~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrV 423 (1715)
.|++|+.||.++||+..... + .....|.++|.++.|+..|.+|++++.|+++.+
T Consensus 249 ~LatG~~~G~~riw~~~G~l-~-------------------------~tl~~HkgPI~slKWnk~G~yilS~~vD~ttil 302 (524)
T KOG0273|consen 249 LLATGSEDGEARIWNKDGNL-I-------------------------STLGQHKGPIFSLKWNKKGTYILSGGVDGTTIL 302 (524)
T ss_pred eEEEeecCcEEEEEecCchh-h-------------------------hhhhccCCceEEEEEcCCCCEEEeccCCccEEE
Confidence 89999999999999975432 2 234557888999999999999999999999999
Q ss_pred EeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEec
Q 048801 424 WSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIP 503 (1715)
Q Consensus 424 WDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl 503 (1715)
||..++. ....+.-|..+-..|.|-. .+.|++++.||.|+|+.+
T Consensus 303 wd~~~g~---------~~q~f~~~s~~~lDVdW~~---------------------------~~~F~ts~td~~i~V~kv 346 (524)
T KOG0273|consen 303 WDAHTGT---------VKQQFEFHSAPALDVDWQS---------------------------NDEFATSSTDGCIHVCKV 346 (524)
T ss_pred EeccCce---------EEEeeeeccCCccceEEec---------------------------CceEeecCCCceEEEEEe
Confidence 9998753 2445555665545555554 468999999999999987
Q ss_pred CCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEE
Q 048801 504 RSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL 583 (1715)
Q Consensus 504 ~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL 583 (1715)
.. ..+..++.+|.+.|.++.|.|.|.+|++++.|++++||+.........|
T Consensus 347 ~~-----------------------------~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l 397 (524)
T KOG0273|consen 347 GE-----------------------------DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDL 397 (524)
T ss_pred cC-----------------------------CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhh
Confidence 64 3466778889999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEccCCC--------cEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEE
Q 048801 584 TGHSASSYVLDVHPFNP--------RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIY 655 (1715)
Q Consensus 584 ~gH~~~V~sLafSP~dg--------~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~ 655 (1715)
.+|...|+.+.|+|.++ ..+++++.|++|++||+..|.++.+|..|..+|.+++|||+|++||+|+.||.|.
T Consensus 398 ~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~ 477 (524)
T KOG0273|consen 398 QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVH 477 (524)
T ss_pred hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeE
Confidence 99999999999998654 5889999999999999999999999998999999999999999999999999999
Q ss_pred EEECCCCcccccc-----ccceeecCCCccEEE
Q 048801 656 LLNTGQGESQKDA-----KYDQFFLGDYRPLIR 683 (1715)
Q Consensus 656 IWdl~tGe~~k~~-----~~~~~fs~D~r~L~~ 683 (1715)
||++.+|+..+.. ..++.|+.+|..|..
T Consensus 478 iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~ 510 (524)
T KOG0273|consen 478 IWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGA 510 (524)
T ss_pred eccccchheeEeecCCCeEEEEEEcCCCCEEEE
Confidence 9999999887643 355667777766654
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=289.18 Aligned_cols=291 Identities=24% Similarity=0.401 Sum_probs=258.5
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEE
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVr 355 (1715)
++.+.+.||.+.|.|+++.|.+.++++|+.|++|+|||+.+|++..++.||-..|..+++++... ||++++.|+.|+
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHp---YlFs~gedk~VK 218 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHP---YLFSAGEDKQVK 218 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCc---eEEEecCCCeeE
Confidence 56677899999999999999999999999999999999999999999999999999999999887 999999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE 435 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~ 435 (1715)
.||+...+.++.+ .+|-..|.|++.+|.-..|++|+.|.+++|||+++.
T Consensus 219 CwDLe~nkvIR~Y-------------------------hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr------ 267 (460)
T KOG0285|consen 219 CWDLEYNKVIRHY-------------------------HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR------ 267 (460)
T ss_pred EEechhhhhHHHh-------------------------ccccceeEEEeccccceeEEecCCcceEEEeeeccc------
Confidence 9999988766543 345677999999999999999999999999999984
Q ss_pred CCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccc
Q 048801 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW 515 (1715)
Q Consensus 436 ~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~ 515 (1715)
..+..+.||..+|..+.+.|.. ..+++|+.|++|++||++.++
T Consensus 268 ---~~V~~l~GH~~~V~~V~~~~~d--------------------------pqvit~S~D~tvrlWDl~agk-------- 310 (460)
T KOG0285|consen 268 ---ASVHVLSGHTNPVASVMCQPTD--------------------------PQVITGSHDSTVRLWDLRAGK-------- 310 (460)
T ss_pred ---ceEEEecCCCCcceeEEeecCC--------------------------CceEEecCCceEEEeeeccCc--------
Confidence 3578999999999999998753 689999999999999998644
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEE
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDV 595 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLaf 595 (1715)
....+..|...|.+++.+|....+|+++.| .|+-|++..|..+..+.+|..-|++++.
T Consensus 311 ---------------------t~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~ 368 (460)
T KOG0285|consen 311 ---------------------TMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSV 368 (460)
T ss_pred ---------------------eeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeee
Confidence 345567788899999999999999999887 6999999999999999999999999999
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCceEEEEEc--------ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 596 HPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEI--------GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 596 SP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~--------h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
.. + .++++|+..|.|.+||..+|-..+.+.. ....|++.+|...|..|++|..|..|.+|.-..
T Consensus 369 ns-D-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 369 NS-D-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cc-C-ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 76 3 4777999999999999999866554421 234689999999999999999999999998543
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=301.99 Aligned_cols=404 Identities=20% Similarity=0.264 Sum_probs=321.6
Q ss_pred CCCCCCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 048801 187 WPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRL 266 (1715)
Q Consensus 187 ~~~~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGt 266 (1715)
.+..|...|..+.|...|..++.+... .....|++-...-+.+|+||.+.|+..-|..+.++|++.|.|+.
T Consensus 102 tfngHK~AVt~l~fd~~G~rlaSGskD---------t~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~ 172 (888)
T KOG0306|consen 102 TFNGHKAAVTTLKFDKIGTRLASGSKD---------TDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSM 172 (888)
T ss_pred eecccccceEEEEEcccCceEeecCCC---------ccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCce
Confidence 345788889999999998766655433 33445555666778899999999999999998899999999999
Q ss_pred EEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC------------------------CCce--
Q 048801 267 VKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD------------------------GLPI-- 320 (1715)
Q Consensus 267 IrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t------------------------g~~l-- 320 (1715)
|++||+++..+..+.-.|.+.|+.+++.+ +.+++++.|+.++||++.. ++.+
T Consensus 173 iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l 250 (888)
T KOG0306|consen 173 IKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINL 250 (888)
T ss_pred EEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEE
Confidence 99999999999999999999999999987 7899999999999999810 0000
Q ss_pred --------------------------------------------------------------------------------
Q 048801 321 -------------------------------------------------------------------------------- 320 (1715)
Q Consensus 321 -------------------------------------------------------------------------------- 320 (1715)
T Consensus 251 ~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~ 330 (888)
T KOG0306|consen 251 VTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTP 330 (888)
T ss_pred eecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEe
Confidence
Q ss_pred ------------------------------------EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCC
Q 048801 321 ------------------------------------SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQY 364 (1715)
Q Consensus 321 ------------------------------------~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~ 364 (1715)
..+.||...|.+++|+.+.. .+++ +..+.|+||+..+.++
T Consensus 331 ~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~---~~~S-ga~~SikiWn~~t~kc 406 (888)
T KOG0306|consen 331 SGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSI---LLAS-GAGESIKIWNRDTLKC 406 (888)
T ss_pred cCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCce---eeee-cCCCcEEEEEccCcce
Confidence 01235777788888888764 3444 4567899999999998
Q ss_pred cceecCCC---------CCCCccCccCC------CCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCC
Q 048801 365 SPRIYLPK---------PPDAITGKSNV------PSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 365 l~~i~~~~---------~~~~i~g~~~~------~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~ 429 (1715)
+.++.... ....+.|.... ............|.+.|++++.+||+..+++|+.|.+|++||..--
T Consensus 407 iRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~ 486 (888)
T KOG0306|consen 407 IRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLV 486 (888)
T ss_pred eEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEE
Confidence 87765431 11111111000 0011123344578999999999999999999999999999998532
Q ss_pred CccCCCCCceeee----eecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC
Q 048801 430 SVEDSEQPIHELD----VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 505 (1715)
Q Consensus 430 ~~~~~~~~~~~l~----~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t 505 (1715)
.. ..+...+.+. ..-.-.+.|.|+.++|++ .+|+.+--|.+++||-+++
T Consensus 487 ~~-~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg--------------------------k~LaVsLLdnTVkVyflDt 539 (888)
T KOG0306|consen 487 VS-VPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG--------------------------KLLAVSLLDNTVKVYFLDT 539 (888)
T ss_pred ec-cCcccceeeeeccceEEeccccEEEEEEcCCC--------------------------cEEEEEeccCeEEEEEecc
Confidence 11 0000001010 111235689999999997 7999999999999998886
Q ss_pred CccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 048801 506 RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG 585 (1715)
Q Consensus 506 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g 585 (1715)
-+ ....+.+|.-+|.|+.+|||++.++||+.|.+|+||-+.-|.|.+.+-+
T Consensus 540 lK-----------------------------FflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA 590 (888)
T KOG0306|consen 540 LK-----------------------------FFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA 590 (888)
T ss_pred ee-----------------------------eeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc
Confidence 32 2345788999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 586 HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 586 H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
|.+.|.++.|.| ...++.|+|.||.|+-||-...++++.+.+|+..|++++.+|+|.++++++.|..|++|.....
T Consensus 591 HdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 591 HDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred ccCceeEEEEcc-cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence 999999999999 7889999999999999999999999999999999999999999999999999999999997653
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-31 Score=298.92 Aligned_cols=285 Identities=18% Similarity=0.263 Sum_probs=250.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCC
Q 048801 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQ 363 (1715)
Q Consensus 284 Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~ 363 (1715)
-...|..|.|.|+|+.|++|+..|.+.+|+..+......+..|..+|.++.|++++. +++||+.+|.|++|+.....
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~---wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGT---WMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCC---EEEEcCCCceEEecccchhh
Confidence 355899999999999999999999999999866555556778999999999999998 89999999999999876432
Q ss_pred CcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee
Q 048801 364 YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV 443 (1715)
Q Consensus 364 ~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~ 443 (1715)
. . .....|...|++++|+|+...|++++.||+|+|||.... ++-..
T Consensus 172 V-k------------------------~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~---------kee~v 217 (464)
T KOG0284|consen 172 V-K------------------------IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP---------KEERV 217 (464)
T ss_pred h-H------------------------HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC---------chhhe
Confidence 1 1 111234578999999999999999999999999999764 33456
Q ss_pred ecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccC
Q 048801 444 LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523 (1715)
Q Consensus 444 l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~ 523 (1715)
+.+|.-.|.++.|+|.. ..|++++.|..|++||.+++.
T Consensus 218 L~GHgwdVksvdWHP~k--------------------------gLiasgskDnlVKlWDprSg~---------------- 255 (464)
T KOG0284|consen 218 LRGHGWDVKSVDWHPTK--------------------------GLIASGSKDNLVKLWDPRSGS---------------- 255 (464)
T ss_pred eccCCCCcceeccCCcc--------------------------ceeEEccCCceeEeecCCCcc----------------
Confidence 79999999999999975 799999999999999999754
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEE
Q 048801 524 PPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIA 603 (1715)
Q Consensus 524 ~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lL 603 (1715)
++..+..|...|..+.|++++++|++++.|..++++|+++.+.+.++++|...|++++|+|....+|
T Consensus 256 -------------cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lf 322 (464)
T KOG0284|consen 256 -------------CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLF 322 (464)
T ss_pred -------------hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccce
Confidence 5566788999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceEEEEE-cccceEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 604 MSAGYDGRTIVWDIWEGTPIRIYE-IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 604 aSgs~DGtI~VWDl~tgk~l~tl~-~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
++||.||.|..|.+...+++..+. +|...|++++|+|=|..|++|+.|..+++|.-.
T Consensus 323 tsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 323 TSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 999999999999998666655543 578899999999999999999999999999753
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-29 Score=272.29 Aligned_cols=294 Identities=23% Similarity=0.377 Sum_probs=247.2
Q ss_pred ceeEEEEcCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCC---CcEEEEe-cCCCCCeEEEEECCCCCEEEEEeCCC
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRS-GRFVITGSDDRLVKIWSMET---AFCLASC-RGHEGDITDLAVSSNNTLVASASNDF 307 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpD-G~~LaTGS~DGtIrIWDl~t---gk~l~tL-~gHs~~VtsLafSpDg~lLASGS~DG 307 (1715)
+..++.+.||.+.|..++|+|- |..|||||.|..|+||++.. -.+...+ .+|...|..++|+|.|++||+||.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4567889999999999999998 89999999999999999885 3344444 37999999999999999999999999
Q ss_pred eeEEEECCCC--CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 308 VIRVWRLPDG--LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 308 tIrVWDl~tg--~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
++.||.-..+ +++.+|.||...|.|++|+++|. +|++++.|..|-||.+..+.....
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~---~LATCSRDKSVWiWe~deddEfec------------------ 142 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN---YLATCSRDKSVWIWEIDEDDEFEC------------------ 142 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC---EEEEeeCCCeEEEEEecCCCcEEE------------------
Confidence 9999986644 67899999999999999999998 999999999999999875443222
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~ 465 (1715)
......|...|..+.|+|...+|++++.|.+|++|.-.. .....+...+.+|.+.|.+++|.+.|
T Consensus 143 ----~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~------dddW~c~~tl~g~~~TVW~~~F~~~G----- 207 (312)
T KOG0645|consen 143 ----IAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED------DDDWECVQTLDGHENTVWSLAFDNIG----- 207 (312)
T ss_pred ----EeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC------CCCeeEEEEecCccceEEEEEecCCC-----
Confidence 233466788899999999999999999999999998762 23367789999999999999999987
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
..|++++.|++++||...+. ....|.
T Consensus 208 ---------------------~rl~s~sdD~tv~Iw~~~~~---------------------------------~~~~~s 233 (312)
T KOG0645|consen 208 ---------------------SRLVSCSDDGTVSIWRLYTD---------------------------------LSGMHS 233 (312)
T ss_pred ---------------------ceEEEecCCcceEeeeeccC---------------------------------cchhcc
Confidence 79999999999999965421 012356
Q ss_pred CCeeEEEeCCCCCEEEEEecCCeEEEEECCCC------ceEE-EEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG------SLVH-SLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg------~~l~-tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
..+..++|. ...|++++.|+.|+||.-... +++. .-..|...|++++|.|....+|++|+.||.|++|.+.
T Consensus 234 r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 234 RALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 678889998 668999999999999976542 1121 3357889999999999657899999999999999874
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=270.71 Aligned_cols=295 Identities=16% Similarity=0.281 Sum_probs=254.9
Q ss_pred ccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--EEEEecCCCCCeEEEEE
Q 048801 216 VCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF--CLASCRGHEGDITDLAV 293 (1715)
Q Consensus 216 i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk--~l~tL~gHs~~VtsLaf 293 (1715)
+.++.|+.....|-..++.+..+++...+.|+.+.+.||++.||+|+. ..|++||+.++. ++.++.+|+..|+++.|
T Consensus 13 LvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF 91 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGF 91 (311)
T ss_pred EEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEE
Confidence 445677778877888899999999999999999999999999999975 589999998774 58999999999999999
Q ss_pred CCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCC
Q 048801 294 SSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKP 373 (1715)
Q Consensus 294 SpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~ 373 (1715)
..+|+++++|+.||+++|||++...+.+.+. |..+|+++..+|+.. .|++|..+|.|++||+....+...+. |.
T Consensus 92 ~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQt---eLis~dqsg~irvWDl~~~~c~~~li-Pe- 165 (311)
T KOG0315|consen 92 QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQT---ELISGDQSGNIRVWDLGENSCTHELI-PE- 165 (311)
T ss_pred eecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcc---eEEeecCCCcEEEEEccCCccccccC-CC-
Confidence 9999999999999999999999976666665 889999999999987 89999999999999998775543321 11
Q ss_pred CCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeE
Q 048801 374 PDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNY 453 (1715)
Q Consensus 374 ~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~s 453 (1715)
....|.+++..|||.+++.+...|.+++|++.+.. ...+..++..+..|++.+..
T Consensus 166 ----------------------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~---~~s~l~P~~k~~ah~~~il~ 220 (311)
T KOG0315|consen 166 ----------------------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ---TASELEPVHKFQAHNGHILR 220 (311)
T ss_pred ----------------------CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC---ccccceEhhheecccceEEE
Confidence 13458999999999999999999999999998743 34456667789999999999
Q ss_pred EEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCC
Q 048801 454 VQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPP 533 (1715)
Q Consensus 454 Lafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 533 (1715)
+.++|++ ++|++++.|.+++||++++-
T Consensus 221 C~lSPd~--------------------------k~lat~ssdktv~iwn~~~~--------------------------- 247 (311)
T KOG0315|consen 221 CLLSPDV--------------------------KYLATCSSDKTVKIWNTDDF--------------------------- 247 (311)
T ss_pred EEECCCC--------------------------cEEEeecCCceEEEEecCCc---------------------------
Confidence 9999987 89999999999999998752
Q ss_pred CCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEc
Q 048801 534 RGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVH 596 (1715)
Q Consensus 534 ~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafS 596 (1715)
-.....+.+|...+..++||.||.||+||+.|+.+++|++..++.++.+.+|.....|++..
T Consensus 248 -~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 248 -FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred -eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 01223567788899999999999999999999999999999999999999998887777653
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=302.63 Aligned_cols=296 Identities=22% Similarity=0.358 Sum_probs=252.4
Q ss_pred ceeEEEEcCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCC-CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeE
Q 048801 233 MQNIKKLRGHRDAVYCAIFDR-SGRFVITGSDDRLVKIWSMET-AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIR 310 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSp-DG~~LaTGS~DGtIrIWDl~t-gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIr 310 (1715)
.+.+.++.||+..|+++.|.| .+.+|++|+.|+.|+||++-. +.+++++.||..+|.+++|+.+|..++|++.|+.|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 456888999999999999999 899999999999999999866 899999999999999999999999999999999999
Q ss_pred EEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCC
Q 048801 311 VWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPS 390 (1715)
Q Consensus 311 VWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~ 390 (1715)
+||+++|+++..+. ....++|+.|.|++.. .+++|+.|+.|+.||+++++.+..+.
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~~n--~fl~G~sd~ki~~wDiRs~kvvqeYd--------------------- 339 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDNQN--IFLVGGSDKKIRQWDIRSGKVVQEYD--------------------- 339 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCCCc--EEEEecCCCcEEEEeccchHHHHHHH---------------------
Confidence 99999999999887 4567899999999853 79999999999999999998766542
Q ss_pred CCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccc
Q 048801 391 SSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470 (1715)
Q Consensus 391 ~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~ 470 (1715)
.|-+.|..+.|-++|+.+++.+.|+.++||+...+.. .+.+. ..+.....++..+|.+
T Consensus 340 ----~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~------ik~i~--~~~~hsmP~~~~~P~~---------- 397 (503)
T KOG0282|consen 340 ----RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP------IKNIA--DPEMHTMPCLTLHPNG---------- 397 (503)
T ss_pred ----hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc------chhhc--chhhccCcceecCCCC----------
Confidence 2456699999999999999999999999999976421 22222 2233356678888876
Q ss_pred ccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC--CCe
Q 048801 471 FKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP--RGV 548 (1715)
Q Consensus 471 ~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~--~~V 548 (1715)
..++.-+.|+.|.++.+...- .......+.+|. +--
T Consensus 398 ----------------~~~~aQs~dN~i~ifs~~~~~--------------------------r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 398 ----------------KWFAAQSMDNYIAIFSTVPPF--------------------------RLNKKKRFEGHSVAGYS 435 (503)
T ss_pred ----------------CeehhhccCceEEEEeccccc--------------------------ccCHhhhhcceeccCce
Confidence 789999999999999765311 011222334442 345
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 549 NMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 549 tslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
..+.|||||.+|++|..||.+.+||..+-+++..+.+|..++..+.|+|.....+|||+.||.|++|+
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 67899999999999999999999999999999999999999999999998889999999999999996
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=283.95 Aligned_cols=292 Identities=19% Similarity=0.269 Sum_probs=253.6
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEE
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRV 311 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrV 311 (1715)
..++.+.+.||.+.|.||++.|...+++||+.|++|+|||+.+|++..++.||-..|..+++|+-..||++++.|+.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 312 WRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 312 WDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
||++..+.++.+.||-..|.|++.+|... .|++|+.|.+++|||+++...+..+
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTld---vl~t~grDst~RvWDiRtr~~V~~l----------------------- 273 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTLD---VLVTGGRDSTIRVWDIRTRASVHVL----------------------- 273 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccce---eEEecCCcceEEEeeecccceEEEe-----------------------
Confidence 99999999999999999999999999876 8999999999999999987654332
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~ 471 (1715)
.+|...|..+.+.|-...+++|+.|++|++||++.++ .+..+..|...|.+++.+|..
T Consensus 274 --~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk---------t~~tlt~hkksvral~lhP~e----------- 331 (460)
T KOG0285|consen 274 --SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK---------TMITLTHHKKSVRALCLHPKE----------- 331 (460)
T ss_pred --cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc---------eeEeeecccceeeEEecCCch-----------
Confidence 4568889999999988889999999999999998753 477888999999999999974
Q ss_pred cccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEE
Q 048801 472 KEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMI 551 (1715)
Q Consensus 472 ~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsl 551 (1715)
..|++++.| .|+.|++..+ ..+..+.+|...|+++
T Consensus 332 ---------------~~fASas~d-nik~w~~p~g-----------------------------~f~~nlsgh~~iintl 366 (460)
T KOG0285|consen 332 ---------------NLFASASPD-NIKQWKLPEG-----------------------------EFLQNLSGHNAIINTL 366 (460)
T ss_pred ---------------hhhhccCCc-cceeccCCcc-----------------------------chhhccccccceeeee
Confidence 567777666 5788877643 3344567788899999
Q ss_pred EeCCCCCEEEEEecCCeEEEEECCCCceEEEEe--------cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 552 VWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT--------GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 552 afSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~--------gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
+...|| ++++|+.+|.|.+||..+|-..+.+. .....|++.+|.. .+..|+||..|.+|++|.-.
T Consensus 367 ~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDk-tg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 367 SVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDK-TGSRLITGEADKTIKMYKED 439 (460)
T ss_pred eeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecc-cCceEEeccCCcceEEEecc
Confidence 998877 77789999999999999987655442 1245688899987 66777899999999999743
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-31 Score=291.69 Aligned_cols=278 Identities=24% Similarity=0.442 Sum_probs=239.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE
Q 048801 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS 321 (1715)
Q Consensus 242 H~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~ 321 (1715)
....|+|+.+. ...+++|..|++|+|||..+..++..|.||++.|.|+.| +.+.|++|+.|.+|+|||+++|+++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhh
Confidence 45689999996 447999999999999999999999999999999999998 56799999999999999999999999
Q ss_pred EEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCccee
Q 048801 322 VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQIL 401 (1715)
Q Consensus 322 ~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vt 401 (1715)
++.+|...|..+.|+.. ++++++.|.++.+||+.....+.. .....+|...|.
T Consensus 272 tlihHceaVLhlrf~ng-----~mvtcSkDrsiaVWdm~sps~it~----------------------rrVLvGHrAaVN 324 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSNG-----YMVTCSKDRSIAVWDMASPTDITL----------------------RRVLVGHRAAVN 324 (499)
T ss_pred HHhhhcceeEEEEEeCC-----EEEEecCCceeEEEeccCchHHHH----------------------HHHHhhhhhhee
Confidence 99999999999999874 899999999999999875432111 122345677789
Q ss_pred EEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccC
Q 048801 402 CCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 402 slafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
.+.|+ .+++++++.|.+|++|++.+. +.+.++.+|...|.|+++..
T Consensus 325 vVdfd--~kyIVsASgDRTikvW~~st~---------efvRtl~gHkRGIAClQYr~----------------------- 370 (499)
T KOG0281|consen 325 VVDFD--DKYIVSASGDRTIKVWSTSTC---------EFVRTLNGHKRGIACLQYRD----------------------- 370 (499)
T ss_pred eeccc--cceEEEecCCceEEEEeccce---------eeehhhhcccccceehhccC-----------------------
Confidence 99985 459999999999999999884 56889999999999998864
Q ss_pred CcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La 561 (1715)
.++++|+.|.+|++||+..| .++..+.+|+.-|.|+.| |.+.|+
T Consensus 371 -----rlvVSGSSDntIRlwdi~~G-----------------------------~cLRvLeGHEeLvRciRF--d~krIV 414 (499)
T KOG0281|consen 371 -----RLVVSGSSDNTIRLWDIECG-----------------------------ACLRVLEGHEELVRCIRF--DNKRIV 414 (499)
T ss_pred -----eEEEecCCCceEEEEecccc-----------------------------HHHHHHhchHHhhhheee--cCceee
Confidence 78999999999999999864 455667889999999999 678999
Q ss_pred EEecCCeEEEEECCCCc---------eEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceE
Q 048801 562 AAIMDCRICVWNAVDGS---------LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPI 623 (1715)
Q Consensus 562 Tgs~DGtI~IWDl~sg~---------~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l 623 (1715)
+|+.||+|+|||+..+. ++.++..|.+.|..+.| +...+++++.|.+|.|||+.++-+-
T Consensus 415 SGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF---D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 415 SGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF---DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred eccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee---cceEEEeccCCCeEEEEEcCCCCcc
Confidence 99999999999998754 34566779999999999 5577889999999999999776543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-29 Score=312.47 Aligned_cols=292 Identities=32% Similarity=0.529 Sum_probs=252.8
Q ss_pred EEEEcCC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 236 IKKLRGH-RDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF--CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 236 l~~L~GH-~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk--~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
...+.+| ...|+|+.|+++|++|++++.|+.|++|++.+++ .+..+.+|...|.+++|+|++.+|++|+.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 5556565 8899999999999999999999999999998888 788889999999999999999999999999999999
Q ss_pred EC-CCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 313 RL-PDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 313 Dl-~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
|+ ..+..++++.+|...|++++|+|++. .+++|+.|++|+|||++++++...+
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g~---~i~Sgs~D~tvriWd~~~~~~~~~l----------------------- 284 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDGN---LLVSGSDDGTVRIWDVRTGECVRKL----------------------- 284 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCCC---EEEEecCCCcEEEEeccCCeEEEee-----------------------
Confidence 99 56689999999999999999999996 8999999999999999987765544
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCC--eeEEEEccCcccccccccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEND--VNYVQFSGCAVASRSAMSD 469 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~--V~sLafspdg~as~~~~~~ 469 (1715)
..|...|++++|+++|.+|++++.|+.|+|||+.++... ++..+.++... +++++|+|++
T Consensus 285 --~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~~~~fsp~~--------- 346 (456)
T KOG0266|consen 285 --KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-------CLKLLSGAENSAPVTSVQFSPNG--------- 346 (456)
T ss_pred --eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-------eeecccCCCCCCceeEEEECCCC---------
Confidence 346778999999999999999999999999999886421 34455555555 9999999987
Q ss_pred cccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC---
Q 048801 470 AFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR--- 546 (1715)
Q Consensus 470 ~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~--- 546 (1715)
.+|++++.|+.+++||+..+.... ...+|..
T Consensus 347 -----------------~~ll~~~~d~~~~~w~l~~~~~~~-----------------------------~~~~~~~~~~ 380 (456)
T KOG0266|consen 347 -----------------KYLLSASLDRTLKLWDLRSGKSVG-----------------------------TYTGHSNLVR 380 (456)
T ss_pred -----------------cEEEEecCCCeEEEEEccCCccee-----------------------------eecccCCcce
Confidence 899999999999999998754322 2222332
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecC-CCCeEEEEEccCCCcEEEEEe--CCCcEEEEECC
Q 048801 547 GVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH-SASSYVLDVHPFNPRIAMSAG--YDGRTIVWDIW 618 (1715)
Q Consensus 547 ~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH-~~~V~sLafSP~dg~lLaSgs--~DGtI~VWDl~ 618 (1715)
.+.+...++.+.++++|+.|+.|++|++.++..+..+.+| ...+..+.++| ...++++++ .|+.|++|...
T Consensus 381 ~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 381 CIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-TENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC-CcCeeeecCcCCCceEEEecCC
Confidence 3444556889999999999999999999999999999999 89999999999 778888888 78999999753
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=295.06 Aligned_cols=282 Identities=21% Similarity=0.358 Sum_probs=244.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE
Q 048801 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS 321 (1715)
Q Consensus 242 H~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~ 321 (1715)
-...|..|.|.|+|+.|+||+..|.+.+|+..+......+..|..+|+++.|+++|.+++||+.+|.|++|+..-. .+.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk 173 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVK 173 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhH
Confidence 3567999999999999999999999999998655555567889999999999999999999999999999997543 445
Q ss_pred EEeCC-CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 322 VLRGH-TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 322 ~L~gH-~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
.+.+| ...|++++|+|... .+++++.||+|+|||....+... ...+|+-.|
T Consensus 174 ~~~ahh~eaIRdlafSpnDs---kF~t~SdDg~ikiWdf~~~kee~-------------------------vL~GHgwdV 225 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDS---KFLTCSDDGTIKIWDFRMPKEER-------------------------VLRGHGWDV 225 (464)
T ss_pred HhhHhhhhhhheeccCCCCc---eeEEecCCCeEEEEeccCCchhh-------------------------eeccCCCCc
Confidence 55544 48999999999776 89999999999999987554322 235678889
Q ss_pred eEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccccc
Q 048801 401 LCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFK 480 (1715)
Q Consensus 401 tslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~ 480 (1715)
.|++|+|...+||+|+.|..|++||.+++ .++.++.+|...|..+.|++++
T Consensus 226 ksvdWHP~kgLiasgskDnlVKlWDprSg---------~cl~tlh~HKntVl~~~f~~n~-------------------- 276 (464)
T KOG0284|consen 226 KSVDWHPTKGLIASGSKDNLVKLWDPRSG---------SCLATLHGHKNTVLAVKFNPNG-------------------- 276 (464)
T ss_pred ceeccCCccceeEEccCCceeEeecCCCc---------chhhhhhhccceEEEEEEcCCC--------------------
Confidence 99999999999999999999999999986 4588899999999999999986
Q ss_pred CCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCE
Q 048801 481 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRF 559 (1715)
Q Consensus 481 ~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~ 559 (1715)
++|++++.|..++++|+++- ..+..+.+|...|++++|+| ...+
T Consensus 277 ------N~Llt~skD~~~kv~DiR~m-----------------------------kEl~~~r~Hkkdv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 277 ------NWLLTGSKDQSCKVFDIRTM-----------------------------KELFTYRGHKKDVTSLTWHPLNESL 321 (464)
T ss_pred ------CeeEEccCCceEEEEehhHh-----------------------------HHHHHhhcchhhheeeccccccccc
Confidence 89999999999999999852 23456788999999999999 4567
Q ss_pred EEEEecCCeEEEEECCCCceEEEE-ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 560 VLAAIMDCRICVWNAVDGSLVHSL-TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 560 LaTgs~DGtI~IWDl~sg~~l~tL-~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
|.+|+.||.|..|.+...+++..+ .+|...|++++|+| =|.+|++|+.|.++++|.-
T Consensus 322 ftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 322 FTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHILATGSNDRTVRFWTR 379 (464)
T ss_pred eeeccCCCceEEEeccccccccCCCcccccceeeeeccc-cceeEeecCCCcceeeecc
Confidence 888999999999999866666555 48999999999999 7899999999999999974
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=269.58 Aligned_cols=299 Identities=21% Similarity=0.290 Sum_probs=228.6
Q ss_pred CCCCCceeeeeeccccCcc-cccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 048801 189 HMQADQVHGLSLREIGGGF-KKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLV 267 (1715)
Q Consensus 189 ~~~~d~V~~ls~~~~g~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtI 267 (1715)
..|.+.|..++....+..+ ...++...+...- ........+..++.|.||...|..++.++||++.++++.|+++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~----L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWK----LTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEE----eccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 3566777777665543221 1222222221111 1112345567899999999999999999999999999999999
Q ss_pred EEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCC--CCCeEEEEecCCCCcceEE
Q 048801 268 KIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGH--TGAVTAIAFSPRPSAIYQL 345 (1715)
Q Consensus 268 rIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH--~~~VtsLafSPdg~~~~~L 345 (1715)
++||+.+|+..+.|.||...|.+++|++|++.|++|+.|.+|.+|++-. .+..++..+ .+.|+|+.|+|+.... +|
T Consensus 88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p-~I 165 (315)
T KOG0279|consen 88 RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNP-II 165 (315)
T ss_pred EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCc-EE
Confidence 9999999999999999999999999999999999999999999999854 445555433 7899999999985333 89
Q ss_pred EEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEe
Q 048801 346 LSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWS 425 (1715)
Q Consensus 346 aSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWD 425 (1715)
++++.|++|++||+++-+.... ..+|.+.++.+++||||.++++|+.||.+.+||
T Consensus 166 vs~s~DktvKvWnl~~~~l~~~-------------------------~~gh~~~v~t~~vSpDGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 166 VSASWDKTVKVWNLRNCQLRTT-------------------------FIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWD 220 (315)
T ss_pred EEccCCceEEEEccCCcchhhc-------------------------cccccccEEEEEECCCCCEEecCCCCceEEEEE
Confidence 9999999999999987654322 234788899999999999999999999999999
Q ss_pred CCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC
Q 048801 426 ACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 505 (1715)
Q Consensus 426 l~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t 505 (1715)
++.++ .+.. ..|...|.+++|+|+. +.+....+..|+|||+.+
T Consensus 221 L~~~k---------~lys-l~a~~~v~sl~fspnr---------------------------ywL~~at~~sIkIwdl~~ 263 (315)
T KOG0279|consen 221 LNEGK---------NLYS-LEAFDIVNSLCFSPNR---------------------------YWLCAATATSIKIWDLES 263 (315)
T ss_pred ccCCc---------eeEe-ccCCCeEeeEEecCCc---------------------------eeEeeccCCceEEEeccc
Confidence 98753 2333 4577899999999973 666666777899999998
Q ss_pred CccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECC
Q 048801 506 RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV 575 (1715)
Q Consensus 506 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~ 575 (1715)
+.++..+.. ... + + ..........+++|++||..|++|..|+.|++|.+.
T Consensus 264 ~~~v~~l~~-------d~~----------g-~--s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 264 KAVVEELKL-------DGI----------G-P--SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhhhhhccc-------ccc----------c-c--ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 765433211 000 0 0 111122345678999999999999999999999864
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-29 Score=292.65 Aligned_cols=288 Identities=20% Similarity=0.316 Sum_probs=254.5
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~ 315 (1715)
.++|..|+..|.||.|+|...+++++-.+|.|.||+.++...++.+.-..-+|.+..|-+-.+++++|+.|..|+||+..
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCC
Q 048801 316 DGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL 395 (1715)
Q Consensus 316 tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~ 395 (1715)
+++.+..+..|..-|.||+.+|..+ ++++++.|-+|++||...+=.. .....+
T Consensus 86 t~ekV~~FeAH~DyIR~iavHPt~P---~vLtsSDDm~iKlW~we~~wa~------------------------~qtfeG 138 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHPTLP---YVLTSSDDMTIKLWDWENEWAC------------------------EQTFEG 138 (794)
T ss_pred cceeeEEeeccccceeeeeecCCCC---eEEecCCccEEEEeeccCceee------------------------eeEEcC
Confidence 9999999999999999999999988 8999999999999999754211 223456
Q ss_pred CCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccc
Q 048801 396 QSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEE 474 (1715)
Q Consensus 396 h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~ 474 (1715)
|.+.|.+++|+| |.+.||+++-|++|+||.+... .+..++.+|...|+|+.|-+.+.
T Consensus 139 H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~---------~~nfTl~gHekGVN~Vdyy~~gd------------- 196 (794)
T KOG0276|consen 139 HEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP---------HPNFTLEGHEKGVNCVDYYTGGD------------- 196 (794)
T ss_pred cceEEEEEEecCCCccceeeeeccccEEEEEcCCC---------CCceeeeccccCcceEEeccCCC-------------
Confidence 899999999999 5689999999999999999653 44678899999999999988651
Q ss_pred ccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC
Q 048801 475 NVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS 554 (1715)
Q Consensus 475 ~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS 554 (1715)
..+|++|+.|.+|+|||..+.. +++++.+|...|..++|.
T Consensus 197 -----------kpylIsgaDD~tiKvWDyQtk~-----------------------------CV~TLeGHt~Nvs~v~fh 236 (794)
T KOG0276|consen 197 -----------KPYLISGADDLTIKVWDYQTKS-----------------------------CVQTLEGHTNNVSFVFFH 236 (794)
T ss_pred -----------cceEEecCCCceEEEeecchHH-----------------------------HHHHhhcccccceEEEec
Confidence 3699999999999999998743 566788999999999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 048801 555 LDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTI 613 (1715)
Q Consensus 555 PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~ 613 (1715)
|.-.+|++|+.||+|+||+..+-++..++.-.-+.|+|++-.+ +...++.|...|.|.
T Consensus 237 p~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k-~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 237 PELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK-GDGKIAVGFDEGSVT 294 (794)
T ss_pred CCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC-CCCeEEEeccCCcEE
Confidence 9999999999999999999999988888887788899999888 555566676666553
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=278.32 Aligned_cols=337 Identities=20% Similarity=0.290 Sum_probs=275.5
Q ss_pred CCCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 048801 190 MQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKI 269 (1715)
Q Consensus 190 ~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrI 269 (1715)
.|.+.|-++++.+. .+..+++..+-..-.|...+...+..+.||.+.|+|+.|+.||.+||||+.+|.|+|
T Consensus 62 ~H~~svFavsl~P~---------~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPN---------NNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred hcCCceEEEEeCCC---------CceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 45666666666542 233344444333344556677788999999999999999999999999999999999
Q ss_pred EeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec
Q 048801 270 WSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS 349 (1715)
Q Consensus 270 WDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS 349 (1715)
|.+.++.....+..-...|.=+.|+|-+.+|++|+.||.|.+|.+.++...+.+.||..++++=.|.|+|+ .++++.
T Consensus 133 ~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK---r~~tgy 209 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK---RILTGY 209 (399)
T ss_pred EEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc---eEEEEe
Confidence 99999999988877778899999999999999999999999999999888999999999999999999998 899999
Q ss_pred CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCC
Q 048801 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~ 429 (1715)
.||+|++|++.+++.+..+... ......|+.++..+..++.|..++.+++-+..++
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~------------------------e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg 265 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQA------------------------EGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG 265 (399)
T ss_pred cCceEEEEecCCCceeEEeccc------------------------ccCcCCccccccccceeEeccCCccEEEEccccc
Confidence 9999999999999766554321 1234678899999999999999999999988887
Q ss_pred CccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccC
Q 048801 430 SVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 509 (1715)
Q Consensus 430 ~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~ 509 (1715)
++.....+ ........+...+.||.+.|... .-.+.++|+-||+|.|||+...+
T Consensus 266 KVv~~~n~-~~~~l~~~~e~~~esve~~~~ss-----------------------~lpL~A~G~vdG~i~iyD~a~~~-- 319 (399)
T KOG0296|consen 266 KVVNCNNG-TVPELKPSQEELDESVESIPSSS-----------------------KLPLAACGSVDGTIAIYDLAAST-- 319 (399)
T ss_pred eEEEecCC-CCccccccchhhhhhhhhccccc-----------------------ccchhhcccccceEEEEecccch--
Confidence 65332221 11122335566666776665421 01578999999999999997522
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCC
Q 048801 510 GKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSAS 589 (1715)
Q Consensus 510 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~ 589 (1715)
.+....|+.+|+.+.|-+ ..+|++++.+|.|++||.++|+++.++.||...
T Consensus 320 ----------------------------~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~ 370 (399)
T KOG0296|consen 320 ----------------------------LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG 370 (399)
T ss_pred ----------------------------hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchh
Confidence 334566888999999998 789999999999999999999999999999999
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 590 SYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 590 V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
|.+++++| +.++++|++.|++.+||++.
T Consensus 371 Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 371 ILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 99999999 88999999999999999863
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=310.86 Aligned_cols=278 Identities=21% Similarity=0.297 Sum_probs=234.6
Q ss_pred EecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEec
Q 048801 280 SCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359 (1715)
Q Consensus 280 tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl 359 (1715)
++......++|..|++|+.+||.|..|..|++|.+... .++.+++ ..+... +=+.+.|-.+.+.|.
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~-------~~~l~~------~d~~sad~~~~~~D~ 438 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKD-------ASDLSN------IDTESADVDVDMLDD 438 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccc-------hhhhcc------ccccccchhhhhccc
Confidence 34434557999999999999999999999999998654 3333331 112221 113333333444444
Q ss_pred CCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCce
Q 048801 360 RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIH 439 (1715)
Q Consensus 360 ~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~ 439 (1715)
..+.. .....+|.++|..+.|+|+.++|++++.|+++|+|.+.+. .
T Consensus 439 ~~~~~-------------------------~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~---------s 484 (707)
T KOG0263|consen 439 DSSGT-------------------------SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW---------S 484 (707)
T ss_pred cCCce-------------------------eEEeecCCCceeeeeecccccceeeccCCcceeeeecccc---------e
Confidence 33221 2224568999999999999999999999999999999874 4
Q ss_pred eeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccc
Q 048801 440 ELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAY 519 (1715)
Q Consensus 440 ~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~ 519 (1715)
++-.+.||..+|..+.|+|.| -+|||++.|++.++|....
T Consensus 485 ~~V~y~GH~~PVwdV~F~P~G--------------------------yYFatas~D~tArLWs~d~-------------- 524 (707)
T KOG0263|consen 485 CLVIYKGHLAPVWDVQFAPRG--------------------------YYFATASHDQTARLWSTDH-------------- 524 (707)
T ss_pred eEEEecCCCcceeeEEecCCc--------------------------eEEEecCCCceeeeeeccc--------------
Confidence 577888999999999999987 6999999999999998764
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCC
Q 048801 520 HLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFN 599 (1715)
Q Consensus 520 ~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~d 599 (1715)
..+.+.+.+|...|.|+.|+|+..|+++|+.|.+|++||+.+|..++.|.||.++|.+|+||| .
T Consensus 525 ---------------~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~ 588 (707)
T KOG0263|consen 525 ---------------NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-C 588 (707)
T ss_pred ---------------CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-C
Confidence 345667889999999999999999999999999999999999999999999999999999999 8
Q ss_pred CcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 600 PRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 600 g~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
|++|++|+.||.|.|||+.+|+++..+.+|.+.|.++.||.||..||+|+.|..|++||+..
T Consensus 589 Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 589 GRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 99999999999999999999999999999999999999999999999999999999999854
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=286.53 Aligned_cols=294 Identities=18% Similarity=0.320 Sum_probs=243.8
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC---CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCee
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET---AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVI 309 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~t---gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtI 309 (1715)
.+..++|..|++.|.-+.||++|+|||||+.|.+..||.+.. -++.+++.||..+|..+.||||.++|++++.|..+
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~ 293 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL 293 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence 345677899999999999999999999999999999998753 35688999999999999999999999999999999
Q ss_pred EEEECCCCCceEEEe-CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCC
Q 048801 310 RVWRLPDGLPISVLR-GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 310 rVWDl~tg~~l~~L~-gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
.+||+.+|.....+. +|...+.+++|.||+. .+++|+.|++|..||+..... ...
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~---~~V~Gs~dr~i~~wdlDgn~~-~~W-------------------- 349 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF---RFVTGSPDRTIIMWDLDGNIL-GNW-------------------- 349 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEccCCc---eeEecCCCCcEEEecCCcchh-hcc--------------------
Confidence 999999999887764 4568899999999997 799999999999999875431 111
Q ss_pred CCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccc
Q 048801 389 PSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~ 468 (1715)
.......|.+++.++||+++++.+.|..|++|+..+... . .+.....+|++++.+.++
T Consensus 350 ----~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d---------r-~lise~~~its~~iS~d~-------- 407 (519)
T KOG0293|consen 350 ----EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD---------R-GLISEEQPITSFSISKDG-------- 407 (519)
T ss_pred ----cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh---------h-ccccccCceeEEEEcCCC--------
Confidence 011124589999999999999999999999999875321 1 133345689999999886
Q ss_pred ccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCC-
Q 048801 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG- 547 (1715)
Q Consensus 469 ~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~- 547 (1715)
+++++.-.+..+.+||+..... +..+.+|..+
T Consensus 408 ------------------k~~LvnL~~qei~LWDl~e~~l-----------------------------v~kY~Ghkq~~ 440 (519)
T KOG0293|consen 408 ------------------KLALVNLQDQEIHLWDLEENKL-----------------------------VRKYFGHKQGH 440 (519)
T ss_pred ------------------cEEEEEcccCeeEEeecchhhH-----------------------------HHHhhcccccc
Confidence 6888888899999999985332 2334444433
Q ss_pred -eeEEEeC-CCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC
Q 048801 548 -VNMIVWS-LDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 548 -VtslafS-PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t 619 (1715)
|-.-||- .+..++++|+.|+.|+||+..+|+++.++.||...|++|+|+|.++.++|+||.||+|+||....
T Consensus 441 fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 441 FIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 3333554 35689999999999999999999999999999999999999999999999999999999998753
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=286.20 Aligned_cols=276 Identities=24% Similarity=0.389 Sum_probs=240.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCC
Q 048801 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQ 363 (1715)
Q Consensus 284 Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~ 363 (1715)
....|+|+.+ |...+++|..|.+|+|||..+..++..+.||++.|.|+.|... .|++|+.|.+|++||+.+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r-----viisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER-----VIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce-----EEEecCCCceEEEEeccCCc
Confidence 4567999988 5668999999999999999999999999999999999999764 89999999999999999998
Q ss_pred CcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee
Q 048801 364 YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV 443 (1715)
Q Consensus 364 ~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~ 443 (1715)
.+.++ ..|...|..+.|+. .++++++.|.+|.|||+.... ...+...
T Consensus 269 ~l~tl-------------------------ihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps------~it~rrV 315 (499)
T KOG0281|consen 269 PLNTL-------------------------IHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPT------DITLRRV 315 (499)
T ss_pred hhhHH-------------------------hhhcceeEEEEEeC--CEEEEecCCceeEEEeccCch------HHHHHHH
Confidence 76554 23577799999964 489999999999999997643 2456678
Q ss_pred ecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccC
Q 048801 444 LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523 (1715)
Q Consensus 444 l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~ 523 (1715)
+.||...|+.+.|+. ++|++++.|.+|++|++.++.
T Consensus 316 LvGHrAaVNvVdfd~----------------------------kyIVsASgDRTikvW~~st~e---------------- 351 (499)
T KOG0281|consen 316 LVGHRAAVNVVDFDD----------------------------KYIVSASGDRTIKVWSTSTCE---------------- 351 (499)
T ss_pred Hhhhhhheeeecccc----------------------------ceEEEecCCceEEEEecccee----------------
Confidence 999999999999975 699999999999999998743
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEE
Q 048801 524 PPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIA 603 (1715)
Q Consensus 524 ~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lL 603 (1715)
.+..+.+|..+|.|+.+ .|+++++|+.|.+|++||+..|.+++.+.||..-|.++.| +...+
T Consensus 352 -------------fvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF---d~krI 413 (499)
T KOG0281|consen 352 -------------FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRI 413 (499)
T ss_pred -------------eehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee---cCcee
Confidence 45667889999998887 7899999999999999999999999999999999999999 55778
Q ss_pred EEEeCCCcEEEEECCCCc---------eEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 604 MSAGYDGRTIVWDIWEGT---------PIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 604 aSgs~DGtI~VWDl~tgk---------~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
++|++||+|+|||+.++. |+.++..|.+.|..+.|. ...|++++.|..|.|||+..|-
T Consensus 414 VSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 414 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred eeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCC
Confidence 899999999999998753 455666688899999984 5679999999999999997763
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=262.99 Aligned_cols=287 Identities=23% Similarity=0.387 Sum_probs=236.3
Q ss_pred eeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 234 k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
+.+..|.+|+++|.++.|..||+|.+|++.|.+|++|+...|.+++++.+|...|.+++.+.|+..+++|+.|..|.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCC
Q 048801 314 LPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393 (1715)
Q Consensus 314 l~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~ 393 (1715)
+.+|+.++.+.+|.+.|+.++|+.+.. .+++|+.|.++++||.++....+
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesS---Vv~SgsfD~s~r~wDCRS~s~eP--------------------------- 137 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESS---VVASGSFDSSVRLWDCRSRSFEP--------------------------- 137 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcce---EEEeccccceeEEEEcccCCCCc---------------------------
Confidence 999999999999999999999999877 89999999999999987543211
Q ss_pred CCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccc
Q 048801 394 GLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 394 ~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
++.+....+.|.++..+.
T Consensus 138 -----------------------------------------------iQildea~D~V~Si~v~~--------------- 155 (307)
T KOG0316|consen 138 -----------------------------------------------IQILDEAKDGVSSIDVAE--------------- 155 (307)
T ss_pred -----------------------------------------------cchhhhhcCceeEEEecc---------------
Confidence 111111122344444432
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW 553 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf 553 (1715)
..|++|+.||+++.||++.++.... . ...+|++++|
T Consensus 156 -------------heIvaGS~DGtvRtydiR~G~l~sD-----------------------------y--~g~pit~vs~ 191 (307)
T KOG0316|consen 156 -------------HEIVAGSVDGTVRTYDIRKGTLSSD-----------------------------Y--FGHPITSVSF 191 (307)
T ss_pred -------------cEEEeeccCCcEEEEEeecceeehh-----------------------------h--cCCcceeEEe
Confidence 4677777777777777775432111 1 2347999999
Q ss_pred CCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEcc-CCCcEEEEEeCCCcEEEEECCCCceEEEEEcccce
Q 048801 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHP-FNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFK 632 (1715)
Q Consensus 554 SPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP-~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~ 632 (1715)
++|++.+++++.|++|++.|-.+|+++..+.||...-+.+..+- .....+++|+.||.|++||+..+..+..+..+...
T Consensus 192 s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v 271 (307)
T KOG0316|consen 192 SKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV 271 (307)
T ss_pred cCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce
Confidence 99999999999999999999999999999999988766554332 14578899999999999999999999999877766
Q ss_pred -EEEEEEcCCCCEEEEEeCCCeEEEE
Q 048801 633 -LVDGKFSPDGTSIVLSDDVGQIYLL 657 (1715)
Q Consensus 633 -V~svafSPDG~~LAsgs~DG~I~IW 657 (1715)
|.+++++|.-..|+++... .+..|
T Consensus 272 ~v~dl~~hp~~~~f~~A~~~-~~~~~ 296 (307)
T KOG0316|consen 272 IVTDLSCHPTMDDFITATGH-GDLFW 296 (307)
T ss_pred eEEeeecccCccceeEecCC-ceece
Confidence 7899999988878777654 34444
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=319.50 Aligned_cols=290 Identities=20% Similarity=0.305 Sum_probs=236.5
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----c----EEEEecCCCCCeEEEEECC-CCCEEEEEeCCCee
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA----F----CLASCRGHEGDITDLAVSS-NNTLVASASNDFVI 309 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg----k----~l~tL~gHs~~VtsLafSp-Dg~lLASGS~DGtI 309 (1715)
+.+|.+.|++++|+|+|++||||+.|+.|+||++.+. . ....+. +...|.+++|++ ++.+||+++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997532 1 223334 356899999987 47899999999999
Q ss_pred EEEECCCCCceEEEeCCCCCeEEEEecC-CCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCC
Q 048801 310 RVWRLPDGLPISVLRGHTGAVTAIAFSP-RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 310 rVWDl~tg~~l~~L~gH~~~VtsLafSP-dg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
+|||+.++..+..+.+|.+.|++++|+| ++. +|++|+.||+|++||+.++..+..+..
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~---~L~Sgs~Dg~v~iWd~~~~~~~~~~~~------------------ 616 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPT---LLASGSDDGSVKLWSINQGVSIGTIKT------------------ 616 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCC---EEEEEcCCCEEEEEECCCCcEEEEEec------------------
Confidence 9999999999999999999999999997 454 899999999999999987765443311
Q ss_pred CCCCCCCCCcceeEEEEc-cCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccc
Q 048801 389 PSSSNGLQSHQILCCAYN-ANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAM 467 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafS-pdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~ 467 (1715)
...|.++.|+ ++|.+|++|+.||.|++||+++.. ..+..+.+|...|.++.|.+ +
T Consensus 617 --------~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~--------~~~~~~~~h~~~V~~v~f~~-~------- 672 (793)
T PLN00181 617 --------KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK--------LPLCTMIGHSKTVSYVRFVD-S------- 672 (793)
T ss_pred --------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC--------ccceEecCCCCCEEEEEEeC-C-------
Confidence 2348899995 579999999999999999997642 13456778999999999974 2
Q ss_pred cccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCC
Q 048801 468 SDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG 547 (1715)
Q Consensus 468 ~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~ 547 (1715)
..|++++.|++|++||+..... .....++..+.+|...
T Consensus 673 -------------------~~lvs~s~D~~ikiWd~~~~~~-----------------------~~~~~~l~~~~gh~~~ 710 (793)
T PLN00181 673 -------------------STLVSSSTDNTLKLWDLSMSIS-----------------------GINETPLHSFMGHTNV 710 (793)
T ss_pred -------------------CEEEEEECCCEEEEEeCCCCcc-----------------------ccCCcceEEEcCCCCC
Confidence 5899999999999999874210 0012334566778889
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEE-------------ecCCCCeEEEEEccCCCcEEEEEeCCCcEEE
Q 048801 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL-------------TGHSASSYVLDVHPFNPRIAMSAGYDGRTIV 614 (1715)
Q Consensus 548 VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL-------------~gH~~~V~sLafSP~dg~lLaSgs~DGtI~V 614 (1715)
+.+++|++++.+|++|+.|+.|+||+......+..+ ..|...|.+++|+| ++.+|++|+.||.|+|
T Consensus 711 i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i 789 (793)
T PLN00181 711 KNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKI 789 (793)
T ss_pred eeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEE
Confidence 999999999999999999999999998766544322 23456799999999 7788999999999999
Q ss_pred EEC
Q 048801 615 WDI 617 (1715)
Q Consensus 615 WDl 617 (1715)
|++
T Consensus 790 ~~~ 792 (793)
T PLN00181 790 LEM 792 (793)
T ss_pred Eec
Confidence 996
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=291.58 Aligned_cols=298 Identities=21% Similarity=0.378 Sum_probs=258.6
Q ss_pred EEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC
Q 048801 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG 317 (1715)
Q Consensus 238 ~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg 317 (1715)
.|..-+..|-.++|+|...+|+++-..|.|.+||..-+.++..+..|.++|..++|+|++.+++||+.|-.|+||+..+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCC
Q 048801 318 LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQS 397 (1715)
Q Consensus 318 ~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~ 397 (1715)
+++.+|.||-.-|..+.|++.-+ .|+|+|.|.+|+||++.+..++..+ .+|.
T Consensus 84 rclftL~GHlDYVRt~~FHheyP---WIlSASDDQTIrIWNwqsr~~iavl-------------------------tGHn 135 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHHEYP---WILSASDDQTIRIWNWQSRKCIAVL-------------------------TGHN 135 (1202)
T ss_pred eehhhhccccceeEEeeccCCCc---eEEEccCCCeEEEEeccCCceEEEE-------------------------ecCc
Confidence 99999999999999999999987 8999999999999999988876554 4679
Q ss_pred cceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCC-------------------CC-CceeeeeecCCCCCeeEEEEc
Q 048801 398 HQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDS-------------------EQ-PIHELDVLSGHENDVNYVQFS 457 (1715)
Q Consensus 398 ~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~-------------------~~-~~~~l~~l~gH~~~V~sLafs 457 (1715)
+.|.|..|+|...++|+++-|.+|+|||+..-+.... ++ .......+.||...|+.++|+
T Consensus 136 HYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh 215 (1202)
T KOG0292|consen 136 HYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH 215 (1202)
T ss_pred eEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec
Confidence 9999999999999999999999999999964321100 00 112235788999999999999
Q ss_pred cCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC
Q 048801 458 GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537 (1715)
Q Consensus 458 pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 537 (1715)
|.. ..|++|+.|..|++|.....+ .-.
T Consensus 216 pTl--------------------------pliVSG~DDRqVKlWrmnetK---------------------------aWE 242 (1202)
T KOG0292|consen 216 PTL--------------------------PLIVSGADDRQVKLWRMNETK---------------------------AWE 242 (1202)
T ss_pred CCc--------------------------ceEEecCCcceeeEEEecccc---------------------------cee
Confidence 965 699999999999999876311 123
Q ss_pred cccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 538 ~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
+.+..+|.+.|+++-|+|...+|++.+.|++|+|||+...+.+++++...+..+.++.+| ...+++ ++.|+-+.||.+
T Consensus 243 vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP-~lNLfA-AgHDsGm~VFkl 320 (1202)
T KOG0292|consen 243 VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHP-ELNLFA-AGHDSGMIVFKL 320 (1202)
T ss_pred ehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecC-Ccceee-eecCCceEEEEE
Confidence 445778999999999999999999999999999999999999999998888999999999 666665 456666777766
Q ss_pred C
Q 048801 618 W 618 (1715)
Q Consensus 618 ~ 618 (1715)
.
T Consensus 321 e 321 (1202)
T KOG0292|consen 321 E 321 (1202)
T ss_pred c
Confidence 5
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=316.37 Aligned_cols=303 Identities=16% Similarity=0.271 Sum_probs=244.3
Q ss_pred CCcEEEEeCCCCcEEEEe-----cCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC--------CceEEEeCCCCCe
Q 048801 264 DRLVKIWSMETAFCLASC-----RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG--------LPISVLRGHTGAV 330 (1715)
Q Consensus 264 DGtIrIWDl~tgk~l~tL-----~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg--------~~l~~L~gH~~~V 330 (1715)
+|.+++|+..+......+ ..|.+.|++++|+|+|.+||+|+.|+.|+||++... .++..+. +...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 788999998876655443 458999999999999999999999999999997532 1233343 45689
Q ss_pred EEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CC
Q 048801 331 TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NG 409 (1715)
Q Consensus 331 tsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG 409 (1715)
.+++|++.... +|++++.||+|++||+.+++.+..+ ..|...|++++|+| ++
T Consensus 536 ~~l~~~~~~~~--~las~~~Dg~v~lWd~~~~~~~~~~-------------------------~~H~~~V~~l~~~p~~~ 588 (793)
T PLN00181 536 SGICWNSYIKS--QVASSNFEGVVQVWDVARSQLVTEM-------------------------KEHEKRVWSIDYSSADP 588 (793)
T ss_pred eeEEeccCCCC--EEEEEeCCCeEEEEECCCCeEEEEe-------------------------cCCCCCEEEEEEcCCCC
Confidence 99999986432 7999999999999999876543332 24577799999997 78
Q ss_pred CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceE
Q 048801 410 TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNI 489 (1715)
Q Consensus 410 ~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~L 489 (1715)
.+|++|+.||.|++||+.++. .+..+..+ ..|.++.|.+.. +..|
T Consensus 589 ~~L~Sgs~Dg~v~iWd~~~~~---------~~~~~~~~-~~v~~v~~~~~~-------------------------g~~l 633 (793)
T PLN00181 589 TLLASGSDDGSVKLWSINQGV---------SIGTIKTK-ANICCVQFPSES-------------------------GRSL 633 (793)
T ss_pred CEEEEEcCCCEEEEEECCCCc---------EEEEEecC-CCeEEEEEeCCC-------------------------CCEE
Confidence 999999999999999998643 24444444 578999996532 3789
Q ss_pred EEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeE
Q 048801 490 VTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRI 569 (1715)
Q Consensus 490 aSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI 569 (1715)
++|+.||.|++||+++.. .+...+.+|...|.++.|. ++.+|++++.|++|
T Consensus 634 atgs~dg~I~iwD~~~~~----------------------------~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~i 684 (793)
T PLN00181 634 AFGSADHKVYYYDLRNPK----------------------------LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTL 684 (793)
T ss_pred EEEeCCCeEEEEECCCCC----------------------------ccceEecCCCCCEEEEEEe-CCCEEEEEECCCEE
Confidence 999999999999997522 1223455788899999997 78899999999999
Q ss_pred EEEECCC------CceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE-------------ccc
Q 048801 570 CVWNAVD------GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE-------------IGR 630 (1715)
Q Consensus 570 ~IWDl~s------g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~-------------~h~ 630 (1715)
+|||+.. +.++..+.+|...+.+++|+| ++.+|++|+.||.|+||+.....++..+. .+.
T Consensus 685 kiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 763 (793)
T PLN00181 685 KLWDLSMSISGINETPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDAS 763 (793)
T ss_pred EEEeCCCCccccCCcceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCC
Confidence 9999974 367889999999999999999 67899999999999999987765554332 233
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 631 FKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 631 ~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
..|.+++|+|+|..|++|+.+|.|+||++
T Consensus 764 ~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 764 QFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 46899999999999999999999999986
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=292.31 Aligned_cols=291 Identities=19% Similarity=0.305 Sum_probs=252.3
Q ss_pred CcEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCeeEEEECCC-CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCC
Q 048801 275 AFCLASCRGHEGDITDLAVSS-NNTLVASASNDFVIRVWRLPD-GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG 352 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~t-g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DG 352 (1715)
.+.+.++.||+..|+++.|.| .+.+|++|+.|+.|+||++-. +.+++++.+|..+|.+++|++++. .+++++.|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~---~fLS~sfD~ 280 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT---SFLSASFDR 280 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC---eeeeeecce
Confidence 356788999999999999999 899999999999999999976 899999999999999999999998 799999999
Q ss_pred cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCc
Q 048801 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 353 tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~ 431 (1715)
.|++||+.+|+++.++.. ...++|+.|+|++ +.|++|+.|+.|+.||+++++
T Consensus 281 ~lKlwDtETG~~~~~f~~--------------------------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k- 333 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHL--------------------------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK- 333 (503)
T ss_pred eeeeeccccceEEEEEec--------------------------CCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-
Confidence 999999999998877754 3447999999998 899999999999999999865
Q ss_pred cCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcc
Q 048801 432 EDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGK 511 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~ 511 (1715)
.++.+..|-+.|..+.|-+++ .++++.+.|++++||+.+....+..
T Consensus 334 --------vvqeYd~hLg~i~~i~F~~~g--------------------------~rFissSDdks~riWe~~~~v~ik~ 379 (503)
T KOG0282|consen 334 --------VVQEYDRHLGAILDITFVDEG--------------------------RRFISSSDDKSVRIWENRIPVPIKN 379 (503)
T ss_pred --------HHHHHHhhhhheeeeEEccCC--------------------------ceEeeeccCccEEEEEcCCCccchh
Confidence 367788899999999999987 7999999999999999875332111
Q ss_pred cccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC---ceEEEEecCC-
Q 048801 512 VGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG---SLVHSLTGHS- 587 (1715)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg---~~l~tL~gH~- 587 (1715)
....+.....+|..+|++.++++-+.|+.|.|+.+... .....+.||.
T Consensus 380 ----------------------------i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v 431 (503)
T KOG0282|consen 380 ----------------------------IADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV 431 (503)
T ss_pred ----------------------------hcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec
Confidence 11223345678999999999999999999999987543 2334667884
Q ss_pred -CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCC-CEEEEEeCCCeEEEEE
Q 048801 588 -ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDG-TSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 588 -~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG-~~LAsgs~DG~I~IWd 658 (1715)
+.-..+.||| |+.+|++|+.||.+.+||..+-+.+..+.+|...++.+.|+|.. ..+|+|+.+|.|++|+
T Consensus 432 aGys~~v~fSp-DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 432 AGYSCQVDFSP-DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCceeeEEEcC-CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 4456789999 88999999999999999999999999999999999999999964 5688999999999996
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=277.52 Aligned_cols=293 Identities=19% Similarity=0.285 Sum_probs=245.6
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC---CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCC
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG---LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG 352 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg---~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DG 352 (1715)
+..+.+..|+..|+-+.||++|++||+++.|.+..+|.+... +...++.+|..+|..+.|+||.+ +|++|+.|.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr---yLlaCg~~e 291 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR---YLLACGFDE 291 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC---eEEecCchH
Confidence 445678889999999999999999999999999999988654 34778899999999999999998 899999999
Q ss_pred cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCcc
Q 048801 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVE 432 (1715)
Q Consensus 353 tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~ 432 (1715)
.+.+||+.+|.....+.. .+...+.+++|.|||..+++|+.|+.|..||+....
T Consensus 292 ~~~lwDv~tgd~~~~y~~------------------------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-- 345 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPS------------------------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-- 345 (519)
T ss_pred heeeccCCcchhhhhccc------------------------CcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--
Confidence 999999999886543311 124568999999999999999999999999997532
Q ss_pred CCCCCceeeeeecCC-CCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcc
Q 048801 433 DSEQPIHELDVLSGH-ENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGK 511 (1715)
Q Consensus 433 ~~~~~~~~l~~l~gH-~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~ 511 (1715)
+....+- ...|.+++..++| +.+++.+.|..|++++..+....
T Consensus 346 --------~~~W~gvr~~~v~dlait~Dg--------------------------k~vl~v~~d~~i~l~~~e~~~dr-- 389 (519)
T KOG0293|consen 346 --------LGNWEGVRDPKVHDLAITYDG--------------------------KYVLLVTVDKKIRLYNREARVDR-- 389 (519)
T ss_pred --------hhcccccccceeEEEEEcCCC--------------------------cEEEEEecccceeeechhhhhhh--
Confidence 2222222 2468999999987 78888889999999988753211
Q ss_pred cccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeE
Q 048801 512 VGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSY 591 (1715)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~ 591 (1715)
.+.....+|+++++|.||+++++.-.+..|.+||+....++..+.||...-+
T Consensus 390 ----------------------------~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~f 441 (519)
T KOG0293|consen 390 ----------------------------GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHF 441 (519)
T ss_pred ----------------------------ccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccce
Confidence 1334466899999999999999999999999999999999999999976543
Q ss_pred EE--EEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCC-CCEEEEEeCCCeEEEEECCC
Q 048801 592 VL--DVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPD-GTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 592 sL--afSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPD-G~~LAsgs~DG~I~IWdl~t 661 (1715)
-+ +|--.+..++++|+.|+.|+||+..+|+++..+.+|...|.+|+|+|. -.++|++++||+|+||....
T Consensus 442 iIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 442 IIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 33 454434579999999999999999999999999999999999999995 56788999999999998753
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=287.24 Aligned_cols=343 Identities=21% Similarity=0.269 Sum_probs=258.6
Q ss_pred ccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCe
Q 048801 209 KHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288 (1715)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~V 288 (1715)
.|+.-|.+.++........|++.-..++.+|..|.++|..|+|+|++.++++||+|-.|+||+..+.+++.+|.||-.-|
T Consensus 17 FHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYV 96 (1202)
T KOG0292|consen 17 FHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYV 96 (1202)
T ss_pred cCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccccee
Confidence 34555666666666777778888888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCccee
Q 048801 289 TDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRI 368 (1715)
Q Consensus 289 tsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i 368 (1715)
..+.|++.-.+|+|+|.|.+|+||++.+++++.+++||..-|.|..|+|... .++|+|.|.+|+|||+..-+....-
T Consensus 97 Rt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED---lIVSaSLDQTVRVWDisGLRkk~~~ 173 (1202)
T KOG0292|consen 97 RTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED---LIVSASLDQTVRVWDISGLRKKNKA 173 (1202)
T ss_pred EEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc---eEEEecccceEEEEeecchhccCCC
Confidence 9999999999999999999999999999999999999999999999999776 8999999999999999754321111
Q ss_pred cCCCCCCCccCcc---CCC--CCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee
Q 048801 369 YLPKPPDAITGKS---NVP--SNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV 443 (1715)
Q Consensus 369 ~~~~~~~~i~g~~---~~~--~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~ 443 (1715)
.. ...+...+.. ... ..........+|...|.-++|+|.-.+|++|+.|..|++|.+...+ ..++.+
T Consensus 174 pg-~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-------aWEvDt 245 (1202)
T KOG0292|consen 174 PG-SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-------AWEVDT 245 (1202)
T ss_pred CC-CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc-------ceeehh
Confidence 00 0001111110 000 0112234567889999999999999999999999999999997543 356788
Q ss_pred ecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccC
Q 048801 444 LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523 (1715)
Q Consensus 444 l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~ 523 (1715)
..+|.+.|.++.|+|.. +.|++.+.|++|+|||+..+..+.
T Consensus 246 crgH~nnVssvlfhp~q--------------------------~lIlSnsEDksirVwDm~kRt~v~------------- 286 (1202)
T KOG0292|consen 246 CRGHYNNVSSVLFHPHQ--------------------------DLILSNSEDKSIRVWDMTKRTSVQ------------- 286 (1202)
T ss_pred hhcccCCcceEEecCcc--------------------------ceeEecCCCccEEEEeccccccee-------------
Confidence 99999999999999974 899999999999999998654332
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec--------------------------CCeEEEEECCCC
Q 048801 524 PPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM--------------------------DCRICVWNAVDG 577 (1715)
Q Consensus 524 ~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~--------------------------DGtI~IWDl~sg 577 (1715)
.+.........++..|..+++++|.. |..|+-+|+.+.
T Consensus 287 ----------------tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~ 350 (1202)
T KOG0292|consen 287 ----------------TFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQ 350 (1202)
T ss_pred ----------------eeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeecccc
Confidence 23333445566666666666654433 233344444332
Q ss_pred c--eEEEEecC---CCCeEEEEEccCCCcEEEEEeCCC-cEEEEEC
Q 048801 578 S--LVHSLTGH---SASSYVLDVHPFNPRIAMSAGYDG-RTIVWDI 617 (1715)
Q Consensus 578 ~--~l~tL~gH---~~~V~sLafSP~dg~lLaSgs~DG-tI~VWDl 617 (1715)
+ .+..++.. ..+++++.++|..+..+++...|+ ..-++.+
T Consensus 351 ~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~i 396 (1202)
T KOG0292|consen 351 KDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQI 396 (1202)
T ss_pred ccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEe
Confidence 2 12222222 256788999996666666655443 3344444
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=273.62 Aligned_cols=281 Identities=21% Similarity=0.335 Sum_probs=238.2
Q ss_pred CCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 048801 191 QADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIW 270 (1715)
Q Consensus 191 ~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIW 270 (1715)
+.+.|.++.+.+ ..|.+..+.|......|.+.+...++.|.--.-+|.++.|-.-.+++++|++|..|+||
T Consensus 12 rSdRVKsVd~HP---------tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 12 RSDRVKSVDFHP---------TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVF 82 (794)
T ss_pred cCCceeeeecCC---------CCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEE
Confidence 445666666544 44666677777788888899999999999999999999999999999999999999999
Q ss_pred eCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC-CceEEEeCCCCCeEEEEecCCCCcceEEEEec
Q 048801 271 SMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG-LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS 349 (1715)
Q Consensus 271 Dl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg-~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS 349 (1715)
+..|++.+..+..|..-|.||+.+|...+++|+|.|-+|++||.+.+ .+.+++.||+.-|.+++|.|...+ .+++++
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~n--tFaS~s 160 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPN--TFASAS 160 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcc--ceeeee
Confidence 99999999999999999999999999999999999999999999865 778899999999999999998775 899999
Q ss_pred CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC--CeEEEecCCCeEEEEeCC
Q 048801 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG--TVFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG--~~LatGs~DG~IrVWDl~ 427 (1715)
.|++|+||.+....... ...+|...|.|+.|-+.| .+|++|+.|.+|+|||..
T Consensus 161 LDrTVKVWslgs~~~nf-------------------------Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ 215 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPHPNF-------------------------TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ 215 (794)
T ss_pred ccccEEEEEcCCCCCce-------------------------eeeccccCcceEEeccCCCcceEEecCCCceEEEeecc
Confidence 99999999986544322 234678889999998865 599999999999999997
Q ss_pred CCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCc
Q 048801 428 KSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 507 (1715)
Q Consensus 428 t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~ 507 (1715)
+ ..++.++.||...|..+.|+|.- ..|++|+.||+++||+..|-+
T Consensus 216 t---------k~CV~TLeGHt~Nvs~v~fhp~l--------------------------piiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 216 T---------KSCVQTLEGHTNNVSFVFFHPEL--------------------------PIIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred h---------HHHHHHhhcccccceEEEecCCC--------------------------cEEEEecCCccEEEecCccee
Confidence 7 45689999999999999999975 699999999999999887633
Q ss_pred cCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEE
Q 048801 508 SHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICV 571 (1715)
Q Consensus 508 ~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~I 571 (1715)
.. ..+.-....|.||+-.+.++.+++|...|.|.|
T Consensus 261 lE-----------------------------~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 261 LE-----------------------------KTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred hh-----------------------------hhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 21 112223446888888888888888877776544
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=297.92 Aligned_cols=291 Identities=27% Similarity=0.409 Sum_probs=250.9
Q ss_pred EEEecCC-CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC--ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcE
Q 048801 278 LASCRGH-EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL--PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354 (1715)
Q Consensus 278 l~tL~gH-s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~--~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtV 354 (1715)
...+.+| ...|+++.|+++|++|++++.|+.+++|++.++. ....+.+|...|.+++|+|++. ++++++.|++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~---~l~s~s~D~ti 227 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS---YLLSGSDDKTL 227 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc---EEEEecCCceE
Confidence 3444444 7899999999999999999999999999998777 7788889999999999999998 89999999999
Q ss_pred EEEecCCC-CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccC
Q 048801 355 RIWDARYS-QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVED 433 (1715)
Q Consensus 355 rIWDl~tg-~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~ 433 (1715)
+|||+... ..+.++ .+|...|++++|+|+|+++++|+.|++|+|||+.++
T Consensus 228 riwd~~~~~~~~~~l-------------------------~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~---- 278 (456)
T KOG0266|consen 228 RIWDLKDDGRNLKTL-------------------------KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG---- 278 (456)
T ss_pred EEeeccCCCeEEEEe-------------------------cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC----
Confidence 99999433 333332 357888999999999999999999999999999874
Q ss_pred CCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc
Q 048801 434 SEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG 513 (1715)
Q Consensus 434 ~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~ 513 (1715)
.++..+.+|.+.|++++|++++ ..|++++.||.|+|||+.++...
T Consensus 279 -----~~~~~l~~hs~~is~~~f~~d~--------------------------~~l~s~s~d~~i~vwd~~~~~~~---- 323 (456)
T KOG0266|consen 279 -----ECVRKLKGHSDGISGLAFSPDG--------------------------NLLVSASYDGTIRVWDLETGSKL---- 323 (456)
T ss_pred -----eEEEeeeccCCceEEEEECCCC--------------------------CEEEEcCCCccEEEEECCCCcee----
Confidence 4588999999999999999987 79999999999999999975521
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccCCCC--CeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeE
Q 048801 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR--GVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSY 591 (1715)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~--~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~ 591 (1715)
....+..+.. .+++++|+|++.+|++++.|+.+++||+..+..+..+.+|...++
T Consensus 324 -----------------------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~ 380 (456)
T KOG0266|consen 324 -----------------------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVR 380 (456)
T ss_pred -----------------------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcce
Confidence 0112222222 589999999999999999999999999999999999999988643
Q ss_pred E---EEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcc-cceEEEEEEcCCCCEEEEEe--CCCeEEEEEC
Q 048801 592 V---LDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG-RFKLVDGKFSPDGTSIVLSD--DVGQIYLLNT 659 (1715)
Q Consensus 592 s---LafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h-~~~V~svafSPDG~~LAsgs--~DG~I~IWdl 659 (1715)
+ ...++ ++.++++|+.|+.|.+|++.++..+..+.+| ...+..+.|+|...++++++ .|+.|++|..
T Consensus 381 ~~~~~~~~~-~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 381 CIFSPTLST-GGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred eEecccccC-CCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 3 33455 7899999999999999999999999999999 88899999999999999987 7899999975
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-26 Score=270.23 Aligned_cols=435 Identities=19% Similarity=0.230 Sum_probs=281.2
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC--CCe
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGS--DDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN--DFV 308 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS--~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~--DGt 308 (1715)
-.+.+.+..|..+++||||+++|+|+|||- ....++||++.+-..+..|..|.-.|+|++|+|.++||++.+. |-.
T Consensus 68 ~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMI 147 (1080)
T KOG1408|consen 68 CTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMI 147 (1080)
T ss_pred cchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceE
Confidence 344556778899999999999999999985 6778999999998899999999999999999999999997654 455
Q ss_pred eEEEECCCCCceEEEeCCCCCeEEEEecCCCCc-----------------------------------------------
Q 048801 309 IRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSA----------------------------------------------- 341 (1715)
Q Consensus 309 IrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~----------------------------------------------- 341 (1715)
|.+||+........- .-...|..++|+.++.+
T Consensus 148 Vnv~dWr~N~~~asn-kiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg 226 (1080)
T KOG1408|consen 148 VNVNDWRVNSSGASN-KISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACG 226 (1080)
T ss_pred EEhhhhhhccccccc-ccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhc
Confidence 667765422111100 01122333333333330
Q ss_pred -------------------------------------------ceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCcc
Q 048801 342 -------------------------------------------IYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAIT 378 (1715)
Q Consensus 342 -------------------------------------------~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~ 378 (1715)
..+|++|+.+|.|++|+..+.....++..+.....-.
T Consensus 227 ~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~ 306 (1080)
T KOG1408|consen 227 VGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDT 306 (1080)
T ss_pred CcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccch
Confidence 0155566666666666655544444333222111100
Q ss_pred CccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEcc
Q 048801 379 GKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSG 458 (1715)
Q Consensus 379 g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafsp 458 (1715)
.....+ ...........-.....+.|++....|.+...|..|+|||++.-+ .. .....+..|...|+.+...|
T Consensus 307 a~~~q~-~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~-----kv-gk~~s~lyHS~ciW~Ve~~p 379 (1080)
T KOG1408|consen 307 ANLSQP-EPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVN-----KV-GKCSSMLYHSACIWDVENLP 379 (1080)
T ss_pred hhcccc-cccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccc-----cc-cceeeeeeccceeeeecccc
Confidence 000000 000000111111224567899999999999999999999998642 12 22345567888888887777
Q ss_pred CcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccc-ccccccCCCCCCC-------C
Q 048801 459 CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWT-RAYHLKVPPPPLP-------P 530 (1715)
Q Consensus 459 dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~-~~~~l~~~~~~~~-------~ 530 (1715)
...- .+ ...-.....|+||+.||+|++|++..+.....+.... ..-.++.+..... .
T Consensus 380 ~nv~----------~~-----~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~ 444 (1080)
T KOG1408|consen 380 CNVH----------SP-----TAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDAS 444 (1080)
T ss_pred cccc----------Cc-----ccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhcc
Confidence 4310 00 0111224579999999999999998632111100000 0000000000000 0
Q ss_pred CCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc--------------------------------
Q 048801 531 QPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS-------------------------------- 578 (1715)
Q Consensus 531 ~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~-------------------------------- 578 (1715)
................+++++++||+|++||+|...|+|+||++...+
T Consensus 445 ~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr 524 (1080)
T KOG1408|consen 445 AGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR 524 (1080)
T ss_pred CCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC
Confidence 011112223344566789999999999999999999999999986422
Q ss_pred --e------------EEEEecCCCCeEEEEEc------------------------------------------------
Q 048801 579 --L------------VHSLTGHSASSYVLDVH------------------------------------------------ 596 (1715)
Q Consensus 579 --~------------l~tL~gH~~~V~sLafS------------------------------------------------ 596 (1715)
+ +.++.+|...|+++.|.
T Consensus 525 dRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~V 604 (1080)
T KOG1408|consen 525 DRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAV 604 (1080)
T ss_pred CceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeee
Confidence 2 22344666666666543
Q ss_pred -cCCCcEEEEEeCCCcEEEEECCCCceEEEEEc---ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc------
Q 048801 597 -PFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEI---GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK------ 666 (1715)
Q Consensus 597 -P~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~---h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k------ 666 (1715)
| ...++++++.|..|+||++.+|+.++.|++ |.+....+...|.|-|||+.+.|.+|.++|+-+|++..
T Consensus 605 dp-~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHs 683 (1080)
T KOG1408|consen 605 DP-TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS 683 (1080)
T ss_pred CC-CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcc
Confidence 3 335778999999999999999999999986 34568889999999999999999999999999999875
Q ss_pred ccccceeecCCCccEEEcCCCCeee
Q 048801 667 DAKYDQFFLGDYRPLIRDSLGNVLD 691 (1715)
Q Consensus 667 ~~~~~~~fs~D~r~L~~d~~g~vld 691 (1715)
.....+-|++|.+.|+..+....+.
T Consensus 684 E~VTG~kF~nDCkHlISvsgDgCIF 708 (1080)
T KOG1408|consen 684 EAVTGVKFLNDCKHLISVSGDGCIF 708 (1080)
T ss_pred hheeeeeecccchhheeecCCceEE
Confidence 3345678999999999776666554
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=252.59 Aligned_cols=294 Identities=19% Similarity=0.284 Sum_probs=241.5
Q ss_pred cEEEEecCCCCCeEEEEECCC-CCEEEEEeCCCeeEEEECCCC---CceEEE-eCCCCCeEEEEecCCCCcceEEEEecC
Q 048801 276 FCLASCRGHEGDITDLAVSSN-NTLVASASNDFVIRVWRLPDG---LPISVL-RGHTGAVTAIAFSPRPSAIYQLLSSSD 350 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpD-g~lLASGS~DGtIrVWDl~tg---~~l~~L-~gH~~~VtsLafSPdg~~~~~LaSgS~ 350 (1715)
..++.+.+|.+.|..++|+|- |.+||+|+.|..|+||++..+ .+...+ .+|...|.+++|+|.++ +|++++.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~---~La~aSF 81 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR---YLASASF 81 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc---EEEEeec
Confidence 356788999999999999998 899999999999999998753 333334 37999999999999998 9999999
Q ss_pred CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCC
Q 048801 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSS 430 (1715)
Q Consensus 351 DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~ 430 (1715)
|+++.||.-..+.+.. .....+|...|.|++|+++|.+||+++.|..|-||.+...
T Consensus 82 D~t~~Iw~k~~~efec-----------------------v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded- 137 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFEC-----------------------VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED- 137 (312)
T ss_pred cceEEEeecCCCceeE-----------------------EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC-
Confidence 9999999866554322 2234567889999999999999999999999999998642
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
....++..+..|...|..+.|+|.. ++|++++.|.+|++|.-...
T Consensus 138 -----dEfec~aVL~~HtqDVK~V~WHPt~--------------------------dlL~S~SYDnTIk~~~~~~d---- 182 (312)
T KOG0645|consen 138 -----DEFECIAVLQEHTQDVKHVIWHPTE--------------------------DLLFSCSYDNTIKVYRDEDD---- 182 (312)
T ss_pred -----CcEEEEeeeccccccccEEEEcCCc--------------------------ceeEEeccCCeEEEEeecCC----
Confidence 3467889999999999999999974 79999999999999975521
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCe
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASS 590 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V 590 (1715)
.. -...+.+.+|...|.+++|++.|..|++++.|++|+||...+. .-.-|...+
T Consensus 183 --dd--------------------W~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~ 236 (312)
T KOG0645|consen 183 --DD--------------------WECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRAL 236 (312)
T ss_pred --CC--------------------eeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccce
Confidence 01 2345677888889999999999999999999999999986522 112377889
Q ss_pred EEEEEccCCCcEEEEEeCCCcEEEEECCCC------ceEE-EEEcccceEEEEEEcCC-CCEEEEEeCCCeEEEEECC
Q 048801 591 YVLDVHPFNPRIAMSAGYDGRTIVWDIWEG------TPIR-IYEIGRFKLVDGKFSPD-GTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 591 ~sLafSP~dg~lLaSgs~DGtI~VWDl~tg------k~l~-tl~~h~~~V~svafSPD-G~~LAsgs~DG~I~IWdl~ 660 (1715)
+.+.|. ...|+|++.|+.|+|+....+ +.+. .-..|...|.+++|.|. ..+|++|++||.|.+|.+.
T Consensus 237 Y~v~W~---~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 237 YDVPWD---NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred Eeeeec---ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 999996 458899999999999976542 1121 22346778999999995 7889999999999999874
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=257.15 Aligned_cols=287 Identities=21% Similarity=0.292 Sum_probs=241.9
Q ss_pred EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC-CCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEE
Q 048801 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP-DGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 277 ~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~-tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVr 355 (1715)
++..+.+|.+.|+.+.|+|+|.+||||+.|..|.+|++. ..+...++++|.+.|..+.|.+++. .|++++.|.+|+
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s---~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGS---HILSCGTDKTVR 115 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCC---EEEEecCCceEE
Confidence 344578999999999999999999999999999999964 4566788899999999999999998 899999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDS 434 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~ 434 (1715)
.||+.+|+.+... ..|..-|.++.-+.-| .++.+|+.||+++|||+++...
T Consensus 116 ~wD~~tG~~~rk~-------------------------k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~--- 167 (338)
T KOG0265|consen 116 GWDAETGKRIRKH-------------------------KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA--- 167 (338)
T ss_pred EEecccceeeehh-------------------------ccccceeeecCccccCCeEEEecCCCceEEEEeecccch---
Confidence 9999999876554 2345556777654444 4677889999999999986422
Q ss_pred CCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccc
Q 048801 435 EQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGR 514 (1715)
Q Consensus 435 ~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~ 514 (1715)
+.++ ...-.++++.|...+ +.+++|+-|+.|++||++..
T Consensus 168 ------~~t~-~~kyqltAv~f~d~s--------------------------~qv~sggIdn~ikvWd~r~~-------- 206 (338)
T KOG0265|consen 168 ------IKTF-ENKYQLTAVGFKDTS--------------------------DQVISGGIDNDIKVWDLRKN-------- 206 (338)
T ss_pred ------hhcc-ccceeEEEEEecccc--------------------------cceeeccccCceeeeccccC--------
Confidence 2222 224478899998775 78999999999999999752
Q ss_pred ccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC----CceEEEEecCCC--
Q 048801 515 WTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD----GSLVHSLTGHSA-- 588 (1715)
Q Consensus 515 ~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s----g~~l~tL~gH~~-- 588 (1715)
.....+.+|...|+.+..+++|.++.+-+.|.+|++||++- .+++..+.+|..
T Consensus 207 ---------------------d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf 265 (338)
T KOG0265|consen 207 ---------------------DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF 265 (338)
T ss_pred ---------------------cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhh
Confidence 23456788999999999999999999999999999999964 345888887643
Q ss_pred --CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEE
Q 048801 589 --SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLL 657 (1715)
Q Consensus 589 --~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IW 657 (1715)
....++|+| +++.+.+|+.|..+++||......+..+.+|.+.|.+++|+|....|.+++.|.+|++=
T Consensus 266 eknlL~cswsp-~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 266 EKNLLKCSWSP-NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred hhhcceeeccC-CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 345678999 78888999999999999998889999999999999999999999999999999999873
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=268.57 Aligned_cols=276 Identities=22% Similarity=0.353 Sum_probs=238.6
Q ss_pred ccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CcEEEEecCCCCCeEEEEECCCCCEE
Q 048801 222 AIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET-AFCLASCRGHEGDITDLAVSSNNTLV 300 (1715)
Q Consensus 222 ~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~t-gk~l~tL~gHs~~VtsLafSpDg~lL 300 (1715)
......++..++++...|+||.++|..|+|+..|++||+++.|-.+++||.++ .++++.+.+|...|.+++|-|-|.+|
T Consensus 129 d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~i 208 (406)
T KOG0295|consen 129 DATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHI 208 (406)
T ss_pred CceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCee
Confidence 33444566677888999999999999999999999999999998899999987 67888899999999999999999999
Q ss_pred EEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCc
Q 048801 301 ASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGK 380 (1715)
Q Consensus 301 ASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~ 380 (1715)
++++.|.+|+.|++.+|-++.++.+|...|..++.+.||. .+++++.|.+|++|-+.++++...
T Consensus 209 lS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt---i~As~s~dqtl~vW~~~t~~~k~~------------- 272 (406)
T KOG0295|consen 209 LSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT---IIASCSNDQTLRVWVVATKQCKAE------------- 272 (406)
T ss_pred eecccccceeEEecccceeEEeccCchHhEEEEEecCCee---EEEecCCCceEEEEEeccchhhhh-------------
Confidence 9999999999999999999999999999999999999997 899999999999999988765433
Q ss_pred cCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCc
Q 048801 381 SNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg 460 (1715)
...|...|-|++|-|...+= . |.+. .+.. ++
T Consensus 273 ------------lR~hEh~vEci~wap~~~~~--~-------i~~a------------------t~~~----------~~ 303 (406)
T KOG0295|consen 273 ------------LREHEHPVECIAWAPESSYP--S-------ISEA------------------TGST----------NG 303 (406)
T ss_pred ------------hhccccceEEEEecccccCc--c-------hhhc------------------cCCC----------CC
Confidence 23467889999998874310 0 0000 0000 01
Q ss_pred ccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
...+++++.|++|++||+.++. ++.+
T Consensus 304 -------------------------~~~l~s~SrDktIk~wdv~tg~-----------------------------cL~t 329 (406)
T KOG0295|consen 304 -------------------------GQVLGSGSRDKTIKIWDVSTGM-----------------------------CLFT 329 (406)
T ss_pred -------------------------ccEEEeecccceEEEEeccCCe-----------------------------EEEE
Confidence 2689999999999999998743 5567
Q ss_pred ccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 541 LLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 541 l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
+.+|...|..++|+|.|+||+++..|++++|||+.++++..++..|..-|++++|+. +.-+++||+-|.++++|..
T Consensus 330 L~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 330 LVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC-CCceEEeccccceeeeeec
Confidence 889999999999999999999999999999999999999999999999999999988 5569999999999999964
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=263.63 Aligned_cols=288 Identities=23% Similarity=0.366 Sum_probs=245.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec--------CCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR--------GHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~--------gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
|...-+-|..|+|||+||++|+.||.|.+|+..+|+..+.++ -+..+|.|+.||.|..+||+|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 566778899999999999999999999999999998765543 478899999999999999999999999999
Q ss_pred ECCCCCceEEEe-CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 313 RLPDGLPISVLR-GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 313 Dl~tg~~l~~L~-gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
.+.+|.+++.+. .|+..|+|+.|+.|+. .+++++.|.+++|.-+.+|+++..+
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~S---qiLS~sfD~tvRiHGlKSGK~LKEf----------------------- 344 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNS---QILSASFDQTVRIHGLKSGKCLKEF----------------------- 344 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcc---hhhcccccceEEEeccccchhHHHh-----------------------
Confidence 999999999996 8999999999999998 8999999999999999999876654
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~ 471 (1715)
.+|...|+.+.|.++|..+++++.||+|+||+..+..+.....+ .+..-+|+++...|..
T Consensus 345 --rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~-------~~~d~~vnsv~~~PKn----------- 404 (508)
T KOG0275|consen 345 --RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP-------LGTDYPVNSVILLPKN----------- 404 (508)
T ss_pred --cCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC-------CCCcccceeEEEcCCC-----------
Confidence 45677899999999999999999999999999988655332222 2345578888887754
Q ss_pred cccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEE
Q 048801 472 KEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMI 551 (1715)
Q Consensus 472 ~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsl 551 (1715)
+..+++|...++|.|.++...- .+.+.. -....+...+.
T Consensus 405 --------------peh~iVCNrsntv~imn~qGQv--------VrsfsS-------------------GkREgGdFi~~ 443 (508)
T KOG0275|consen 405 --------------PEHFIVCNRSNTVYIMNMQGQV--------VRSFSS-------------------GKREGGDFINA 443 (508)
T ss_pred --------------CceEEEEcCCCeEEEEeccceE--------Eeeecc-------------------CCccCCceEEE
Confidence 4789999999999999886311 111110 01123456678
Q ss_pred EeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 552 VWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 552 afSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
++||.|.++.+.+.|+.++.|.+.+|++-+++..|...|..++-+| ...++++=+.||.+++|.
T Consensus 444 ~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP-HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 444 ILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP-HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCc-ccchhhhhcccchhhhcC
Confidence 8999999999999999999999999999999999999999999999 788999999999999995
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-26 Score=258.45 Aligned_cols=295 Identities=22% Similarity=0.348 Sum_probs=246.3
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCC
Q 048801 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS 362 (1715)
Q Consensus 283 gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg 362 (1715)
.|...|.++... +.+|++|+.||.++|||. .|+...++.||.++|.+++|.-.+.....|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 388899988887 789999999999999996 78999999999999998888655443337999999999999998876
Q ss_pred CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCc-----------
Q 048801 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSV----------- 431 (1715)
Q Consensus 363 ~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~----------- 431 (1715)
...... .....+|...|.+++..++|..+++|+.|.+|.||+..+...
T Consensus 180 ~~~~~~---------------------~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rr 238 (423)
T KOG0313|consen 180 ENKVKA---------------------LKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRR 238 (423)
T ss_pred hhhhhH---------------------HhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhh
Confidence 543211 111237888999999999999999999999999999332110
Q ss_pred -----cCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCC
Q 048801 432 -----EDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 506 (1715)
Q Consensus 432 -----~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~ 506 (1715)
........++..+.||..+|.++.|++. ..+.+++.|.+|+.||+.++
T Consensus 239 k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~---------------------------~v~yS~SwDHTIk~WDletg 291 (423)
T KOG0313|consen 239 KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA---------------------------TVIYSVSWDHTIKVWDLETG 291 (423)
T ss_pred hhhhhhhcccccCceEEecccccceeeEEEcCC---------------------------CceEeecccceEEEEEeecc
Confidence 0111223456789999999999999984 58999999999999999986
Q ss_pred ccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc---eEEEE
Q 048801 507 RSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS---LVHSL 583 (1715)
Q Consensus 507 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~---~l~tL 583 (1715)
..... ......++|+.++|..++|++|+.|..|++||.+++. ..++|
T Consensus 292 ~~~~~------------------------------~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~ 341 (423)
T KOG0313|consen 292 GLKST------------------------------LTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSL 341 (423)
T ss_pred cceee------------------------------eecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEee
Confidence 53221 2235578999999999999999999999999998764 45688
Q ss_pred ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 584 TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT-PIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 584 ~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk-~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
.+|.+.|.++.|+|.+..+|++|++||++++||+++.+ ++..+.+|...|.++.|.. |.+|++|+.|..|+|+.-
T Consensus 342 ~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 342 IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEecc
Confidence 99999999999999999999999999999999999887 9999999999999999975 567999999999999874
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-27 Score=253.07 Aligned_cols=291 Identities=23% Similarity=0.312 Sum_probs=252.3
Q ss_pred EEEecCCCCCeEEEEECC---CCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcE
Q 048801 278 LASCRGHEGDITDLAVSS---NNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSp---Dg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtV 354 (1715)
-.++.||+.+|..++||| +|-+|++++.||.-.+-+-++|.-+.++.||.+.|++.....+.. ..++++.|-+-
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~---~aasaaadfta 83 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNAT---RAASAAADFTA 83 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhh---hhhhhcccchh
Confidence 356789999999999986 899999999999999999999999999999999999999988765 67899999999
Q ss_pred EEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCC
Q 048801 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDS 434 (1715)
Q Consensus 355 rIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~ 434 (1715)
++||.-+|..+..+ .|.+-|..++|+.|.++|++|+.+..++|||+...
T Consensus 84 kvw~a~tgdelhsf--------------------------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p----- 132 (334)
T KOG0278|consen 84 KVWDAVTGDELHSF--------------------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP----- 132 (334)
T ss_pred hhhhhhhhhhhhhh--------------------------hhhheeeeEEecccchhhhccchHHHhhhhhccCC-----
Confidence 99999888765443 35677999999999999999999999999999754
Q ss_pred CCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccc
Q 048801 435 EQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGR 514 (1715)
Q Consensus 435 ~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~ 514 (1715)
..+...+.+|.+.|..+.|.... +.|++.+.|++|++||.+++..+.
T Consensus 133 ---~App~E~~ghtg~Ir~v~wc~eD--------------------------~~iLSSadd~tVRLWD~rTgt~v~---- 179 (334)
T KOG0278|consen 133 ---KAPPKEISGHTGGIRTVLWCHED--------------------------KCILSSADDKTVRLWDHRTGTEVQ---- 179 (334)
T ss_pred ---CCCchhhcCCCCcceeEEEeccC--------------------------ceEEeeccCCceEEEEeccCcEEE----
Confidence 33456788999999999998753 788888999999999999865322
Q ss_pred ccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEE
Q 048801 515 WTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLD 594 (1715)
Q Consensus 515 ~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLa 594 (1715)
.......|+++.++++|++|.++ ..+.|.+||..+..+++.+.. ...|.+..
T Consensus 180 --------------------------sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~-P~nV~SAS 231 (334)
T KOG0278|consen 180 --------------------------SLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM-PCNVESAS 231 (334)
T ss_pred --------------------------EEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC-cccccccc
Confidence 22235678999999999988765 467899999999998888764 34588899
Q ss_pred EccCCCcEEEEEeCCCcEEEEECCCCceEEEE-EcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Q 048801 595 VHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY-EIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGES 664 (1715)
Q Consensus 595 fSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl-~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~ 664 (1715)
++| +..++++|+.|+.++.||..+|+.+..+ .+|.++|.++.|+|||...|+|+.||+|+||.+..++.
T Consensus 232 L~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 232 LHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 999 5688889999999999999999999997 88999999999999999999999999999999987753
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=282.16 Aligned_cols=288 Identities=26% Similarity=0.452 Sum_probs=250.6
Q ss_pred EEEcC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEE-ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEEC
Q 048801 237 KKLRG-HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLAS-CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL 314 (1715)
Q Consensus 237 ~~L~G-H~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~t-L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl 314 (1715)
..+.+ |...|.|..|. +.++++++.|++|++|+..++..+.. +.||.+.|.+++|..-+.+|++|+.|.+++|||+
T Consensus 201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC 278 (537)
T ss_pred eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence 34444 67788999998 56899999999999999999999988 9999999999999887889999999999999999
Q ss_pred CCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 315 PDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 315 ~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
.+|.+..++.+|...|.++...+. ++++|+.|.+|++|++.++.++..+ .
T Consensus 279 ~sg~C~~~l~gh~stv~~~~~~~~-----~~~sgs~D~tVkVW~v~n~~~l~l~-------------------------~ 328 (537)
T KOG0274|consen 279 STGECTHSLQGHTSSVRCLTIDPF-----LLVSGSRDNTVKVWDVTNGACLNLL-------------------------R 328 (537)
T ss_pred CCCcEEEEecCCCceEEEEEccCc-----eEeeccCCceEEEEeccCcceEEEe-------------------------c
Confidence 999999999999999999999875 6889999999999999988766543 2
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccc
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEE 474 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~ 474 (1715)
+|...|.++.++ +.++++|+.||+|.||++.+ .+++..+.+|...|.++.+.+.
T Consensus 329 ~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~---------~~cl~sl~gH~~~V~sl~~~~~--------------- 382 (537)
T KOG0274|consen 329 GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT---------GKCLKSLSGHTGRVYSLIVDSE--------------- 382 (537)
T ss_pred cccccEEEEEec--CCEEEEEecCceEEEEEhhh---------ceeeeeecCCcceEEEEEecCc---------------
Confidence 267889999997 78999999999999999986 4568999999999999988752
Q ss_pred ccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC
Q 048801 475 NVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS 554 (1715)
Q Consensus 475 ~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS 554 (1715)
..+++|+.|++|++||+.+.. .++..+.+|..-+..+.+
T Consensus 383 ------------~~~~Sgs~D~~IkvWdl~~~~----------------------------~c~~tl~~h~~~v~~l~~- 421 (537)
T KOG0274|consen 383 ------------NRLLSGSLDTTIKVWDLRTKR----------------------------KCIHTLQGHTSLVSSLLL- 421 (537)
T ss_pred ------------ceEEeeeeccceEeecCCchh----------------------------hhhhhhcCCccccccccc-
Confidence 489999999999999998741 234456666666655544
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceEEEEec-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE
Q 048801 555 LDNRFVLAAIMDCRICVWNAVDGSLVHSLTG-HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 555 PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g-H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~ 627 (1715)
.+++|++++.|++|++||..++++++++.+ |.+.|.++++. ...+++++.||++++||+.++++++.+-
T Consensus 422 -~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~~~~~l~ 491 (537)
T KOG0274|consen 422 -RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGTLIRTLL 491 (537)
T ss_pred -ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCchhhhhh
Confidence 778999999999999999999999999999 77889988875 4577788999999999999999988774
|
|
| >KOG1787 consensus Kinase A-anchor protein Neurobeachin and related BEACH and WD40 repeat proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-27 Score=307.89 Aligned_cols=142 Identities=14% Similarity=0.160 Sum_probs=131.6
Q ss_pred CCccCcccCCchhhHHHHhhhhhhhhhcccccccccchhHHHHHHHHhhccCchh----------------------hHH
Q 048801 12 APSLGKAPLKFSSTVQEMAQLEQQDMVANQVVEADVDLREVYFLIIHFLSSGPCQ----------------------RTL 69 (1715)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~i~ElyfLi~~fL~~gp~~----------------------~~~ 69 (1715)
...|+-.-.=|++++++|++|++ |++||||+||||||+|++|.+.+.+. +.|
T Consensus 590 ~gkfd~~dr~~~sv~~~~r~~l~------d~sdvkelipeffy~p~ll~~~~~~~lg~~~dg~~vi~v~lppwa~~pe~f 663 (1126)
T KOG1787|consen 590 DGKFDHADRAFSSVASSWRRCLR------DTSDVKELIPEFFYFPELLVNSNLYNLGVRVDGEPVIDVVLPPWAKSPEDF 663 (1126)
T ss_pred ccccccchhhHHHHHHHHhhhcc------chhhHHHhhhHHHHHHHHHhccccccceeecCCccceeeecccccCCHHHH
Confidence 44566666779999999999999 99999999999999999999887552 789
Q ss_pred HHHHHHHHhcCCCccccccc----cccCCCCCCCCCCCCCccccCcccccccCCCCChHHH-HHHHHHHHhcCCCCCCCc
Q 048801 70 GLLWNELLEHQLLPRRYHAW----FSRSGVNSGNDNDDGISFPLSYNKLVERYPHIEWDHL-VKLLRQLLLYKASPFHGR 144 (1715)
Q Consensus 70 ~~L~ReALESeyVS~~LH~W----FGyKQrG~eAv~A~NVFh~LTYEG~Vdld~i~dp~~r-~aie~QI~nFGQTP~QL~ 144 (1715)
+.+|||||||+|||+|||+| |||||+|+||++|.|||||+||||+|+++.+.|++.| ++++.||.+|||||+|+|
T Consensus 664 ~~~nr~aLes~fvs~~l~~widlifg~Kq~g~ea~~a~nvf~~~tyeG~v~~~~~~d~~~~~eai~~~i~~f~~~~~~~~ 743 (1126)
T KOG1787|consen 664 ETRNREALESEFVSCQLHQWIDLIFGYKQRGPEAVRAMNVFYYLTYEGAVDLDSITDQVLRTEAIEAQIASFGQTPSQLL 743 (1126)
T ss_pred HHHHHHHhhccccccccchhHHhhhhHhhcCHHHHHhhhhhccCCccccccccccCChhHHHHHHHHHHhhccccchhhh
Confidence 99999999999999999999 9999999999999999999999999999999999999 899999999999999999
Q ss_pred cCCCCCCCCCccccc
Q 048801 145 IGGIAPNAADVPTLL 159 (1715)
Q Consensus 145 ~~pHPPr~~~v~sll 159 (1715)
.++|||+...+...+
T Consensus 744 ~e~~~~~~~~~~~~~ 758 (1126)
T KOG1787|consen 744 QEQHPPRASESKLAL 758 (1126)
T ss_pred hhccCCcchhccccc
Confidence 999999987766544
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=243.09 Aligned_cols=294 Identities=18% Similarity=0.245 Sum_probs=238.1
Q ss_pred EEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC
Q 048801 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG 317 (1715)
Q Consensus 238 ~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg 317 (1715)
.|+||..+++.|.|..+|.+|++++.|.++.||-..+|+.+.++.||++.|+|+..+.+.+.|++|+.|.+++|||+.+|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeCCCCCeEEEEecCCCCcceEEEEe-----cCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCC
Q 048801 318 LPISVLRGHTGAVTAIAFSPRPSAIYQLLSS-----SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392 (1715)
Q Consensus 318 ~~l~~L~gH~~~VtsLafSPdg~~~~~LaSg-----S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~ 392 (1715)
+++..+. ...+|..+.|+.+++ +++.+ +..+.|.++|++...... ....+...
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn---~~l~~tD~~mg~~~~v~~fdi~~~~~~~------------------~s~ep~~k 142 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGN---LILASTDKQMGYTCFVSVFDIRDDSSDI------------------DSEEPYLK 142 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCc---EEEEEehhhcCcceEEEEEEccCChhhh------------------cccCceEE
Confidence 9999998 667899999999987 33333 335788999987433100 01111222
Q ss_pred CCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccc
Q 048801 393 NGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFK 472 (1715)
Q Consensus 393 ~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~ 472 (1715)
...+...++.+-|.|-+.+|++|..||.|.+||++++. ..+.....|...|+.++++++.
T Consensus 143 I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~--------~~v~s~~~h~~~Ind~q~s~d~------------ 202 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK--------ELVDSDEEHSSKINDLQFSRDR------------ 202 (327)
T ss_pred ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc--------eeeechhhhccccccccccCCc------------
Confidence 23345679999999999999999999999999999863 3456667788999999999986
Q ss_pred ccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 048801 473 EENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIV 552 (1715)
Q Consensus 473 ~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsla 552 (1715)
.++++++.|.+.++||+.+-..+ .......+|++.+
T Consensus 203 --------------T~FiT~s~Dttakl~D~~tl~v~------------------------------Kty~te~PvN~aa 238 (327)
T KOG0643|consen 203 --------------TYFITGSKDTTAKLVDVRTLEVL------------------------------KTYTTERPVNTAA 238 (327)
T ss_pred --------------ceEEecccCccceeeeccceeeE------------------------------EEeeeccccccee
Confidence 79999999999999999873322 2223456899999
Q ss_pred eCCCCCEEEEEecCCe--EEEEECCCC------------ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 553 WSLDNRFVLAAIMDCR--ICVWNAVDG------------SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 553 fSPDG~~LaTgs~DGt--I~IWDl~sg------------~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
++|-...++.|+.... |.-=..+.| +.+..+++|-++|++|+||| ++...++|+.||.|+|..+.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEEEEEec
Confidence 9998888887764332 222222223 34567789999999999999 77888999999999997653
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-26 Score=246.91 Aligned_cols=296 Identities=16% Similarity=0.235 Sum_probs=245.8
Q ss_pred EecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEec
Q 048801 280 SCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359 (1715)
Q Consensus 280 tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl 359 (1715)
.++||..+|+.|.++.+|.+|++++.|.++.||--.+|+.+.++.||.+.|+|+...-+.. +|++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~---~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSK---HLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcc---eeeeccccceeEEEEc
Confidence 4689999999999999999999999999999999999999999999999999999999887 8999999999999999
Q ss_pred CCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-----CCeEEEEeCCCCCccCC
Q 048801 360 RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-----DTFARVWSACKSSVEDS 434 (1715)
Q Consensus 360 ~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-----DG~IrVWDl~t~~~~~~ 434 (1715)
.+|+++..+.. +..|..+.|+.+|++++.... .+.|.++|++.... .
T Consensus 82 ~tGk~la~~k~--------------------------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~--~ 133 (327)
T KOG0643|consen 82 ETGKQLATWKT--------------------------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS--D 133 (327)
T ss_pred CCCcEEEEeec--------------------------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh--h
Confidence 99998877654 345899999999998887654 46899999985431 1
Q ss_pred CCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccc
Q 048801 435 EQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGR 514 (1715)
Q Consensus 435 ~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~ 514 (1715)
.....++..+..+...++...|.|.+ +.|++|..||.|.+||++++...
T Consensus 134 ~~s~ep~~kI~t~~skit~a~Wg~l~--------------------------~~ii~Ghe~G~is~~da~~g~~~----- 182 (327)
T KOG0643|consen 134 IDSEEPYLKIPTPDSKITSALWGPLG--------------------------ETIIAGHEDGSISIYDARTGKEL----- 182 (327)
T ss_pred hcccCceEEecCCccceeeeeecccC--------------------------CEEEEecCCCcEEEEEcccCcee-----
Confidence 11123456677788999999999976 89999999999999999985421
Q ss_pred ccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEE
Q 048801 515 WTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLD 594 (1715)
Q Consensus 515 ~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLa 594 (1715)
+.....|...|+.+++++|..++++++.|.+.++||+.+.++++++. ...+|++.+
T Consensus 183 -----------------------v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aa 238 (327)
T KOG0643|consen 183 -----------------------VDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAA 238 (327)
T ss_pred -----------------------eechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-eccccccee
Confidence 22234577799999999999999999999999999999999999987 457899999
Q ss_pred EccCCCcEEEEEeCCCc-------------EEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 595 VHPFNPRIAMSAGYDGR-------------TIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 595 fSP~dg~lLaSgs~DGt-------------I~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
++|....+++-||.+-. .++|++-..+.+..+++|-++|.+++|+|||+..++|++||.|+|.-+..
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 99966666655554321 12233333456778889999999999999999999999999999986643
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=253.87 Aligned_cols=305 Identities=20% Similarity=0.327 Sum_probs=240.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCC---CCEEEEEeCCCeeEEEECCCC
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN---NTLVASASNDFVIRVWRLPDG 317 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpD---g~lLASGS~DGtIrVWDl~tg 317 (1715)
-|.+.|.+|... +++|+||+.||.++|||.. |+...++.||.++|.+++|--. ...|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 388889998887 7899999999999999976 8999999999999998888543 346999999999999998877
Q ss_pred Cc----eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCC-CCCccCccCCCCCCCCCCC
Q 048801 318 LP----ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKP-PDAITGKSNVPSNNGPSSS 392 (1715)
Q Consensus 318 ~~----l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~-~~~i~g~~~~~~~~~~~~~ 392 (1715)
.. +....||...|-++...+++. .+++|+.|.+|.||+..+... ..+..... ...............+...
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgt---r~~SgS~D~~lkiWs~~~~~~-~~~E~~s~~rrk~~~~~~~~~~r~P~vt 255 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGT---RFCSGSWDTMLKIWSVETDEE-DELESSSNRRRKKQKREKEGGTRTPLVT 255 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCC---eEEeecccceeeecccCCCcc-ccccccchhhhhhhhhhhcccccCceEE
Confidence 43 344459999999999999998 899999999999999432211 11100000 0000000001113345667
Q ss_pred CCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccc
Q 048801 393 NGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFK 472 (1715)
Q Consensus 393 ~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~ 472 (1715)
..+|...|.++.|++ ...+.+++.|.+|++||+.++.. ...+.+ ...++|+.++|..
T Consensus 256 l~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~---------~~~~~~-~ksl~~i~~~~~~------------ 312 (423)
T KOG0313|consen 256 LEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL---------KSTLTT-NKSLNCISYSPLS------------ 312 (423)
T ss_pred ecccccceeeEEEcC-CCceEeecccceEEEEEeecccc---------eeeeec-CcceeEeeccccc------------
Confidence 788999999999998 66889999999999999988643 233332 3478899998864
Q ss_pred ccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 048801 473 EENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIV 552 (1715)
Q Consensus 473 ~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsla 552 (1715)
++|++|+.|..|++||.+++.. ....+.+.+|.+.|.++.
T Consensus 313 --------------~Ll~~gssdr~irl~DPR~~~g--------------------------s~v~~s~~gH~nwVssvk 352 (423)
T KOG0313|consen 313 --------------KLLASGSSDRHIRLWDPRTGDG--------------------------SVVSQSLIGHKNWVSSVK 352 (423)
T ss_pred --------------ceeeecCCCCceeecCCCCCCC--------------------------ceeEEeeecchhhhhhee
Confidence 7999999999999999997531 123456889999999999
Q ss_pred eCCCCC-EEEEEecCCeEEEEECCCCc-eEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 553 WSLDNR-FVLAAIMDCRICVWNAVDGS-LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 553 fSPDG~-~LaTgs~DGtI~IWDl~sg~-~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
|+|... .|++|+.|+++++||+++.. ++..+.+|...|.++.|.. +.++++||.|.+|+|+.-
T Consensus 353 wsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 353 WSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred cCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--CceEEeccCcceEEEecc
Confidence 999665 57889999999999999987 9999999999999999964 678999999999999864
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-26 Score=245.18 Aligned_cols=291 Identities=21% Similarity=0.323 Sum_probs=251.1
Q ss_pred EEEEcCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 236 IKKLRGHRDAVYCAIFDR---SGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSp---DG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
..+..||+.+|..++||| +|-+|++++.||.-.+-+-+||.-+.++.||.+.|+..++..+-...|+++.|-+.+||
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 345689999999999984 89999999999999999999999999999999999999999999899999999999999
Q ss_pred ECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCC
Q 048801 313 RLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392 (1715)
Q Consensus 313 Dl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~ 392 (1715)
|.-+|..+..+. |..-|.+++|+.+.. +|++|+.+..++|||++..+. +...
T Consensus 87 ~a~tgdelhsf~-hkhivk~~af~~ds~---~lltgg~ekllrvfdln~p~A------------------------pp~E 138 (334)
T KOG0278|consen 87 DAVTGDELHSFE-HKHIVKAVAFSQDSN---YLLTGGQEKLLRVFDLNRPKA------------------------PPKE 138 (334)
T ss_pred hhhhhhhhhhhh-hhheeeeEEecccch---hhhccchHHHhhhhhccCCCC------------------------Cchh
Confidence 999999999887 999999999999987 899999999999999875432 1223
Q ss_pred CCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccc
Q 048801 393 NGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFK 472 (1715)
Q Consensus 393 ~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~ 472 (1715)
...|...|..+-|....+.|++.+.|++||+||.+++.. +..+. ...+|+++.+++++
T Consensus 139 ~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~---------v~sL~-~~s~VtSlEvs~dG------------ 196 (334)
T KOG0278|consen 139 ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE---------VQSLE-FNSPVTSLEVSQDG------------ 196 (334)
T ss_pred hcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE---------EEEEe-cCCCCcceeeccCC------------
Confidence 355688899999999999999999999999999998643 33333 34578999999876
Q ss_pred ccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 048801 473 EENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIV 552 (1715)
Q Consensus 473 ~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsla 552 (1715)
.+++....+.|.+||..+-..+ .....+..|.+..
T Consensus 197 ---------------~ilTia~gssV~Fwdaksf~~l------------------------------Ks~k~P~nV~SAS 231 (334)
T KOG0278|consen 197 ---------------RILTIAYGSSVKFWDAKSFGLL------------------------------KSYKMPCNVESAS 231 (334)
T ss_pred ---------------CEEEEecCceeEEeccccccce------------------------------eeccCcccccccc
Confidence 7888888899999998762211 1122345688899
Q ss_pred eCCCCCEEEEEecCCeEEEEECCCCceEEEE-ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce
Q 048801 553 WSLDNRFVLAAIMDCRICVWNAVDGSLVHSL-TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTP 622 (1715)
Q Consensus 553 fSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL-~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~ 622 (1715)
++|+..++++|+.|+.++.||..+|..+..+ ++|.++|.||.|+| ++.+.++|+.||+|+||....++.
T Consensus 232 L~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeeccCCCceEEEEEecCCCc
Confidence 9999999999999999999999999999986 89999999999999 888999999999999999866553
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-25 Score=266.83 Aligned_cols=408 Identities=17% Similarity=0.170 Sum_probs=308.7
Q ss_pred cCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCC-EEEEE
Q 048801 225 KPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT-LVASA 303 (1715)
Q Consensus 225 ~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~-lLASG 303 (1715)
...+.+.+.+.+.+|+++...|+++.=+|--..+|.|..+|+|.|+++..++.+.+++.-.+.|+.++|..||. ++|+|
T Consensus 184 lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~ 263 (910)
T KOG1539|consen 184 LQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASG 263 (910)
T ss_pred EEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEec
Confidence 34456678899999999999999999999889999999999999999999999999995569999999999986 56777
Q ss_pred eCCCeeEEEECCCCCceEEEe-CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccC
Q 048801 304 SNDFVIRVWRLPDGLPISVLR-GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSN 382 (1715)
Q Consensus 304 S~DGtIrVWDl~tg~~l~~L~-gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~ 382 (1715)
+..|.+.+||++..+.+..+. .|.+.|+.+.|.|... .|++++.|..+++|=..++.-.+++
T Consensus 264 ~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep---Vl~ta~~DnSlk~~vfD~~dg~pR~-------------- 326 (910)
T KOG1539|consen 264 RSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP---VLVTAGADNSLKVWVFDSGDGVPRL-------------- 326 (910)
T ss_pred cCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc---eEeeccCCCceeEEEeeCCCCcchh--------------
Confidence 778999999999888777766 7999999999999887 8999999999999976655432221
Q ss_pred CCCCCCCCCCCCCCCcceeEEEEc-cCCCeEEEecCCCeEEEEeCCCCCccCCCCC-------------------ceeee
Q 048801 383 VPSNNGPSSSNGLQSHQILCCAYN-ANGTVFVTGSSDTFARVWSACKSSVEDSEQP-------------------IHELD 442 (1715)
Q Consensus 383 ~~~~~~~~~~~~~h~~~VtslafS-pdG~~LatGs~DG~IrVWDl~t~~~~~~~~~-------------------~~~l~ 442 (1715)
.....+|..+..|+.|. .+|.++.+++.|++++.+++........... ..++.
T Consensus 327 -------LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~ 399 (910)
T KOG1539|consen 327 -------LRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIV 399 (910)
T ss_pred -------eeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcce
Confidence 22345678888899987 6888899999999888887753221100000 00000
Q ss_pred --------------eecCCCCCeeEEEEccCcccccccccccccc------cccccccCCcccCceEEEEcCCCeEEEEe
Q 048801 443 --------------VLSGHENDVNYVQFSGCAVASRSAMSDAFKE------ENVPKFKNSWFCHDNIVTCSRDGSAIIWI 502 (1715)
Q Consensus 443 --------------~l~gH~~~V~sLafspdg~as~~~~~~~~~~------~~~~~~~~s~~~~~~LaSgS~DGsIrIWD 502 (1715)
.+..|.+...+-.|+-... ......+.. ..........+|+++.+.|+..|.|-+|+
T Consensus 400 ~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~---~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 400 EFAFENAREKEWDNVITAHKGKRSAYTWNFRNK---TSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred eeecccchhhhhcceeEEecCcceEEEEeccCc---ccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence 0111222222222211000 000000000 01111112236789999999999999999
Q ss_pred cCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEE
Q 048801 503 PRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHS 582 (1715)
Q Consensus 503 l~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~t 582 (1715)
+.++...+.++ ....|...|+.++...-++.+++++.+|.+.+||+....++..
T Consensus 477 mQSGi~r~sf~--------------------------~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~ 530 (910)
T KOG1539|consen 477 MQSGIHRKSFG--------------------------DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKS 530 (910)
T ss_pred cccCeeecccc--------------------------cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeee
Confidence 99865433322 2346888999999999999999999999999999999888887
Q ss_pred EecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 583 LTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 583 L~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
+.- ...+.++..+. ...+++.+..|-.|+|+|+.+.+.++.|.+|...|++++|||||++|++++.|+.|++||+.+|
T Consensus 531 l~l-~~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 531 LRL-GSSITGIVYHR-VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred ecc-CCCcceeeeee-hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc
Confidence 763 34467777777 5678888889999999999999999999999999999999999999999999999999999999
Q ss_pred cccc-----ccccceeecCCCccEEEcCCC
Q 048801 663 ESQK-----DAKYDQFFLGDYRPLIRDSLG 687 (1715)
Q Consensus 663 e~~k-----~~~~~~~fs~D~r~L~~d~~g 687 (1715)
.++. .......|+|.|..|+..+.+
T Consensus 609 ~lID~~~vd~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 609 TLIDGLLVDSPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred ceeeeEecCCcceeeEECCCCCEEEEEEec
Confidence 8874 334556899999988866443
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-25 Score=258.29 Aligned_cols=301 Identities=22% Similarity=0.329 Sum_probs=231.7
Q ss_pred eEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc----EEEEec-CCCCCeEEEEECCCCCEEEEEeCCCee
Q 048801 235 NIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF----CLASCR-GHEGDITDLAVSSNNTLVASASNDFVI 309 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk----~l~tL~-gHs~~VtsLafSpDg~lLASGS~DGtI 309 (1715)
.-..|.+|+..|.++++.|.|..|+|||.|.+|++||+.... ..+.|. .-...|.++.|++.|..|++.+....+
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 345688999999999999999999999999999999987432 222222 234579999999999999888888899
Q ss_pred EEEECCCCCceE-------------EEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCC
Q 048801 310 RVWRLPDGLPIS-------------VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDA 376 (1715)
Q Consensus 310 rVWDl~tg~~l~-------------~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~ 376 (1715)
+|+|- .|..+. ..+||...++|.+|+|.... .+++++.||+++|||+...+....+..+.+.
T Consensus 239 kl~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~--~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~-- 313 (641)
T KOG0772|consen 239 KLLDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE--EFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA-- 313 (641)
T ss_pred eEEcc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCccc--ceEEecCCCcEEEEecCCchhheeEEeeccC--
Confidence 99995 443322 23589999999999999875 7999999999999999876543333322221
Q ss_pred ccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC--CeeEE
Q 048801 377 ITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN--DVNYV 454 (1715)
Q Consensus 377 i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~--~V~sL 454 (1715)
.+..-.++.|+|+++|.+||+|+.||.|.+|+...... .+ .+..-.+|.. .|+||
T Consensus 314 -----------------~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v----~p--~~~vk~AH~~g~~Itsi 370 (641)
T KOG0772|consen 314 -----------------GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV----RP--VMKVKDAHLPGQDITSI 370 (641)
T ss_pred -----------------CCcccCceeeecCCCcchhhhcccCCceeeeecCCccc----cc--ceEeeeccCCCCceeEE
Confidence 12244589999999999999999999999999854321 22 2344567776 99999
Q ss_pred EEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 455 QFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 455 afspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
.|+++| ++|++-+.|+++++||++.-+....
T Consensus 371 ~FS~dg--------------------------~~LlSRg~D~tLKvWDLrq~kkpL~----------------------- 401 (641)
T KOG0772|consen 371 SFSYDG--------------------------NYLLSRGFDDTLKVWDLRQFKKPLN----------------------- 401 (641)
T ss_pred Eecccc--------------------------chhhhccCCCceeeeeccccccchh-----------------------
Confidence 999997 8999999999999999986321100
Q ss_pred CCCcccccCCCCCeeEEEeCCCCCEEEEEec------CCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeC
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM------DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGY 608 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPDG~~LaTgs~------DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~ 608 (1715)
...-+.....-+.++|||+.++|++|.. .|++++||..+...+..+.-....|..+.|||-=+.++ .|+.
T Consensus 402 ---~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~-~gsg 477 (641)
T KOG0772|consen 402 ---VRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF-AGSG 477 (641)
T ss_pred ---hhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee-eecC
Confidence 0111223345677899999999999863 56899999999999999987788899999999544444 5777
Q ss_pred CCcEEEEE
Q 048801 609 DGRTIVWD 616 (1715)
Q Consensus 609 DGtI~VWD 616 (1715)
||+++||=
T Consensus 478 dG~~~vyY 485 (641)
T KOG0772|consen 478 DGTAHVYY 485 (641)
T ss_pred CCceEEEE
Confidence 89998863
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-24 Score=238.77 Aligned_cols=298 Identities=18% Similarity=0.278 Sum_probs=242.0
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC--CCee
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN--DFVI 309 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~--DGtI 309 (1715)
.+++.+.|..-.+.|+++.|+++|.+|++++.|-+|+|||..+|+.+.++..+.-.|..++|......++.++. |.+|
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 45566677777889999999999999999999999999999999999999999899999999887777777766 8899
Q ss_pred EEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCC
Q 048801 310 RVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 310 rVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
+.-++.+.+.++.+.||...|++|+.+|-+. .+++++.|++|++||++..++.-.+...
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d---~FlS~S~D~tvrLWDlR~~~cqg~l~~~------------------ 141 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDD---TFLSSSLDKTVRLWDLRVKKCQGLLNLS------------------ 141 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCC---eEEecccCCeEEeeEecCCCCceEEecC------------------
Confidence 9999999999999999999999999999887 8999999999999999977655444321
Q ss_pred CCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccc
Q 048801 390 SSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSD 469 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~ 469 (1715)
.-..+||.|+|-++|+|.....|++||++.-. ..|........+.....+.+.|+|+|
T Consensus 142 ---------~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~d----kgPF~tf~i~~~~~~ew~~l~FS~dG--------- 199 (311)
T KOG1446|consen 142 ---------GRPIAAFDPEGLIFALANGSELIKLYDLRSFD----KGPFTTFSITDNDEAEWTDLEFSPDG--------- 199 (311)
T ss_pred ---------CCcceeECCCCcEEEEecCCCeEEEEEecccC----CCCceeEccCCCCccceeeeEEcCCC---------
Confidence 12468999999999999988899999998631 23333333333556788999999998
Q ss_pred cccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCee
Q 048801 470 AFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVN 549 (1715)
Q Consensus 470 ~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vt 549 (1715)
+.++.+...+.+.+.|.-+|.....+... .....---
T Consensus 200 -----------------K~iLlsT~~s~~~~lDAf~G~~~~tfs~~--------------------------~~~~~~~~ 236 (311)
T KOG1446|consen 200 -----------------KSILLSTNASFIYLLDAFDGTVKSTFSGY--------------------------PNAGNLPL 236 (311)
T ss_pred -----------------CEEEEEeCCCcEEEEEccCCcEeeeEeec--------------------------cCCCCcce
Confidence 78888999999999998776533222110 00011124
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 550 MIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG-HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 550 slafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g-H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
..+|+||+++|++|+.||+|.+|++.+|..+..+.+ +.+++.++.|+| .-.++ ++.+..+.+|=..
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP-~~~mf--~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP-RYAMF--VSASSNLVFWLPD 303 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC-ceeee--eecCceEEEEecc
Confidence 678999999999999999999999999999999998 799999999988 33344 4456778888654
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-26 Score=260.72 Aligned_cols=287 Identities=23% Similarity=0.325 Sum_probs=240.2
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF--CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk--~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
...+..|.+.|..+.|-++...|+||+.|..|++|++...+ .+.+|.|..+.|+++.|.++++.+++++.|+.+++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 44578899999999999998899999999999999997766 7788999999999999999999999999999999999
Q ss_pred CCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCC
Q 048801 314 LPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393 (1715)
Q Consensus 314 l~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~ 393 (1715)
+...+...+|.||++.|+++.|..... .+++|+.|.+|++||+....+..++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~~---~vVsgs~DRtiK~WDl~k~~C~kt~l~----------------------- 301 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSHS---RVVSGSADRTIKLWDLQKAYCSKTVLP----------------------- 301 (459)
T ss_pred ccchhhhhhhcccccceeeehhhcccc---ceeeccccchhhhhhhhhhheeccccc-----------------------
Confidence 999999999999999999999998765 599999999999999988776555432
Q ss_pred CCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccc
Q 048801 394 GLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 394 ~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
...+..|+.+ +..+++|..|+.|++||+++.. +......+. .|+++..+.++
T Consensus 302 ---~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~---------~~~sv~~gg-~vtSl~ls~~g------------- 353 (459)
T KOG0288|consen 302 ---GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSAD---------KTRSVPLGG-RVTSLDLSMDG------------- 353 (459)
T ss_pred ---cccccceEec--ceeeeecccccceEEEeccCCc---------eeeEeecCc-ceeeEeeccCC-------------
Confidence 2234445544 5678899999999999998753 344555554 89999999886
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW 553 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf 553 (1715)
..|++++.|.++.+.|+++......+.. .-.......+.++|
T Consensus 354 -------------~~lLsssRDdtl~viDlRt~eI~~~~sA-------------------------~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 354 -------------LELLSSSRDDTLKVIDLRTKEIRQTFSA-------------------------EGFKCASDWTRVVF 395 (459)
T ss_pred -------------eEEeeecCCCceeeeecccccEEEEeec-------------------------cccccccccceeEE
Confidence 6888889999999999997553322110 00111234888999
Q ss_pred CCCCCEEEEEecCCeEEEEECCCCceEEEEecCCC--CeEEEEEccCCCcEEEEEeCCCcEEEE
Q 048801 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSA--SSYVLDVHPFNPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 554 SPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~--~V~sLafSP~dg~lLaSgs~DGtI~VW 615 (1715)
||++.|+++|+.||.|+||++.++++...+..... .|++++|+| .|..|++++.++.+.+|
T Consensus 396 Spd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 396 SPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEec
Confidence 99999999999999999999999999999876544 499999999 77888899999999999
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=275.94 Aligned_cols=264 Identities=20% Similarity=0.347 Sum_probs=203.7
Q ss_pred ccceeEEEEc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC--------------------------------C--
Q 048801 231 QKMQNIKKLR-GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET--------------------------------A-- 275 (1715)
Q Consensus 231 ~~~k~l~~L~-GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~t--------------------------------g-- 275 (1715)
......+.+. +|.++|.|+.||+||+|||+||.||.|+||.+.. .
T Consensus 254 sal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~ 333 (712)
T KOG0283|consen 254 SALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKIS 333 (712)
T ss_pred eeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccc
Confidence 3445566677 9999999999999999999999999999998754 0
Q ss_pred --------------------------cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCC
Q 048801 276 --------------------------FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGA 329 (1715)
Q Consensus 276 --------------------------k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~ 329 (1715)
+++..|.||.+.|.+|.||.++ +|++++.|.+|+||++....++.+|. |..-
T Consensus 334 ~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-Hndf 411 (712)
T KOG0283|consen 334 SRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDF 411 (712)
T ss_pred ccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCe
Confidence 1223467999999999999665 88999999999999999999999998 9999
Q ss_pred eEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC
Q 048801 330 VTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG 409 (1715)
Q Consensus 330 VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG 409 (1715)
||||+|+|.+.. ||++|+-||.|+||++...+.+.-..+ ..-|++++|.|||
T Consensus 412 VTcVaFnPvDDr--yFiSGSLD~KvRiWsI~d~~Vv~W~Dl--------------------------~~lITAvcy~PdG 463 (712)
T KOG0283|consen 412 VTCVAFNPVDDR--YFISGSLDGKVRLWSISDKKVVDWNDL--------------------------RDLITAVCYSPDG 463 (712)
T ss_pred eEEEEecccCCC--cEeecccccceEEeecCcCeeEeehhh--------------------------hhhheeEEeccCC
Confidence 999999997764 899999999999999986654322111 2459999999999
Q ss_pred CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceE
Q 048801 410 TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNI 489 (1715)
Q Consensus 410 ~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~L 489 (1715)
+..++|+.+|.+++|++...++....+-...-..-..|. .|+.++|.|.. .+.+
T Consensus 464 k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~-------------------------~~~v 517 (712)
T KOG0283|consen 464 KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGD-------------------------PDEV 517 (712)
T ss_pred ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCC-------------------------CCeE
Confidence 999999999999999998754322111000000111233 89999999854 3578
Q ss_pred EEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeE
Q 048801 490 VTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRI 569 (1715)
Q Consensus 490 aSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI 569 (1715)
++.+.|..|+|+|.++...+.++.... ....-....|+.||++|++|+.|..|
T Consensus 518 LVTSnDSrIRI~d~~~~~lv~KfKG~~---------------------------n~~SQ~~Asfs~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 518 LVTSNDSRIRIYDGRDKDLVHKFKGFR---------------------------NTSSQISASFSSDGKHIVSASEDSWV 570 (712)
T ss_pred EEecCCCceEEEeccchhhhhhhcccc---------------------------cCCcceeeeEccCCCEEEEeecCceE
Confidence 888999999999997644333321110 11123456889999999999999999
Q ss_pred EEEECCCC
Q 048801 570 CVWNAVDG 577 (1715)
Q Consensus 570 ~IWDl~sg 577 (1715)
+||+....
T Consensus 571 YiW~~~~~ 578 (712)
T KOG0283|consen 571 YIWKNDSF 578 (712)
T ss_pred EEEeCCCC
Confidence 99998543
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-24 Score=255.56 Aligned_cols=381 Identities=15% Similarity=0.188 Sum_probs=265.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecC-C-----------------------CCCeEEEEECCCCCEEE
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRG-H-----------------------EGDITDLAVSSNNTLVA 301 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~g-H-----------------------s~~VtsLafSpDg~lLA 301 (1715)
..|++.+ .++|+.|..+|.|+||+.++...+.+|.. | --...++.|++....|.
T Consensus 263 AnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~kls 340 (1080)
T KOG1408|consen 263 ANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLS 340 (1080)
T ss_pred cceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEE
Confidence 4555555 57999999999999999877655544421 1 11234678999999999
Q ss_pred EEeCCCeeEEEECCCCCce---EEEeCCCCCeEEEEecCCC-Cc-------ceEEEEecCCCcEEEEecCCCCCcceec-
Q 048801 302 SASNDFVIRVWRLPDGLPI---SVLRGHTGAVTAIAFSPRP-SA-------IYQLLSSSDDGTCRIWDARYSQYSPRIY- 369 (1715)
Q Consensus 302 SGS~DGtIrVWDl~tg~~l---~~L~gH~~~VtsLafSPdg-~~-------~~~LaSgS~DGtVrIWDl~tg~~l~~i~- 369 (1715)
+...|..++|||+++-..+ ..+--|...|+.+.-.|-+ .. ...+++++.|++|++|++..+..-..+.
T Consensus 341 cVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrR 420 (1080)
T KOG1408|consen 341 CVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRR 420 (1080)
T ss_pred EEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeec
Confidence 9999999999999874332 2333588888888766621 00 0168999999999999997632211110
Q ss_pred ------------CCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCC
Q 048801 370 ------------LPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQP 437 (1715)
Q Consensus 370 ------------~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~ 437 (1715)
.....+.+.. ...................|.+++++|+|++||+|..-|.++||++..
T Consensus 421 Nils~~l~ki~y~d~~~q~~~d-~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~--------- 490 (1080)
T KOG1408|consen 421 NILSANLSKIPYEDSTQQIMHD-ASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE--------- 490 (1080)
T ss_pred ccchhhhhcCccccCchhhhhh-ccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh---------
Confidence 0000000000 000001111122223345699999999999999999999999999965
Q ss_pred ceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCcc-Cccccc-c
Q 048801 438 IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS-HGKVGR-W 515 (1715)
Q Consensus 438 ~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~-~~~~~~-~ 515 (1715)
...+..+.+|...|.|+.|+-... ..++|++++.|..|.|||+...-. ...+.. .
T Consensus 491 l~~~~~~eAHesEilcLeyS~p~~-----------------------~~kLLASasrdRlIHV~Dv~rny~l~qtld~HS 547 (1080)
T KOG1408|consen 491 LEYTCFMEAHESEILCLEYSFPVL-----------------------TNKLLASASRDRLIHVYDVKRNYDLVQTLDGHS 547 (1080)
T ss_pred hhhhhheecccceeEEEeecCchh-----------------------hhHhhhhccCCceEEEEecccccchhhhhcccc
Confidence 345667889999999999985321 136899999999999999864211 111100 0
Q ss_pred cccccccCCCCCCC----------------CCCCCCC---CcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC
Q 048801 516 TRAYHLKVPPPPLP----------------PQPPRGG---PRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD 576 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~----------------~~~~~g~---~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s 576 (1715)
.....++....... .+....+ +...-.-....+..++..|..+++++++.|..|+||++.+
T Consensus 548 ssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s 627 (1080)
T KOG1408|consen 548 SSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES 627 (1080)
T ss_pred cceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccc
Confidence 00000010000000 0000000 0111111234578899999999999999999999999999
Q ss_pred CceEEEEec---CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCe
Q 048801 577 GSLVHSLTG---HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQ 653 (1715)
Q Consensus 577 g~~l~tL~g---H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~ 653 (1715)
|++.+.|++ |.+....+...| .+.+|++...|.++.++|+.+|++++...+|...|+.+.|++|-+.|++.+.||+
T Consensus 628 gKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC 706 (1080)
T KOG1408|consen 628 GKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC 706 (1080)
T ss_pred cceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCce
Confidence 999999974 667788889999 8899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCC
Q 048801 654 IYLLNTGQG 662 (1715)
Q Consensus 654 I~IWdl~tG 662 (1715)
|.||.+...
T Consensus 707 IFvW~lp~~ 715 (1080)
T KOG1408|consen 707 IFVWKLPLT 715 (1080)
T ss_pred EEEEECchh
Confidence 999998653
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=234.16 Aligned_cols=287 Identities=19% Similarity=0.252 Sum_probs=241.6
Q ss_pred EEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEE--EeCCCCCeEEEEecCCCCcceEEEEecCCCcEEE
Q 048801 279 ASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISV--LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356 (1715)
Q Consensus 279 ~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~--L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrI 356 (1715)
+.+++|...|.+++|+.+|..|++|+.|+++.||+++.++.+.. ..+|.+.|-.++|.|..+. .|++++.|.+|++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d--~~atas~dk~ir~ 91 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPD--LFATASGDKTIRI 91 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCc--ceEEecCCceEEE
Confidence 45678999999999999999999999999999999987755543 4689999999999998765 7999999999999
Q ss_pred EecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCC
Q 048801 357 WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQ 436 (1715)
Q Consensus 357 WDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~ 436 (1715)
||++.+++...+... ..=.-+.|+|+|.++++++.|..|.+.|.++.+...
T Consensus 92 wd~r~~k~~~~i~~~--------------------------~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~--- 142 (313)
T KOG1407|consen 92 WDIRSGKCTARIETK--------------------------GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVN--- 142 (313)
T ss_pred EEeccCcEEEEeecc--------------------------CcceEEEEcCCCCEEEEecCcccEEEEEecccceee---
Confidence 999999877665431 223468899999999999999999999998754311
Q ss_pred CceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccc
Q 048801 437 PIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWT 516 (1715)
Q Consensus 437 ~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~ 516 (1715)
-....-.++.+.|+-+. ++++.....|+|.|.....
T Consensus 143 -------~~~~~~e~ne~~w~~~n--------------------------d~Fflt~GlG~v~ILsyps----------- 178 (313)
T KOG1407|consen 143 -------EEQFKFEVNEISWNNSN--------------------------DLFFLTNGLGCVEILSYPS----------- 178 (313)
T ss_pred -------hhcccceeeeeeecCCC--------------------------CEEEEecCCceEEEEeccc-----------
Confidence 11223356677777443 6777777789999976542
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEc
Q 048801 517 RAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVH 596 (1715)
Q Consensus 517 ~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafS 596 (1715)
..++..+..|+....||.|+|+|+++|+|+.|..+.+||+...-+++.+..+.-+|..|.|+
T Consensus 179 ------------------Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS 240 (313)
T KOG1407|consen 179 ------------------LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFS 240 (313)
T ss_pred ------------------cccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEec
Confidence 34667788999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCC---------CeEEEEECC
Q 048801 597 PFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDV---------GQIYLLNTG 660 (1715)
Q Consensus 597 P~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~D---------G~I~IWdl~ 660 (1715)
. ++++||+|+.|..|-|=++.+|..+..++ +.++...|+|+|...+||.+++| |.|+||.+.
T Consensus 241 ~-dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 241 H-DGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred c-CcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 8 89999999999999999999999999998 78899999999999999977553 566766553
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-25 Score=241.28 Aligned_cols=297 Identities=25% Similarity=0.428 Sum_probs=250.1
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEE
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRV 311 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrV 311 (1715)
..++++.|.||.+.|+.|+.......+.|++.|.+-+||.+++|.|+.++.||.+.|++|.|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 35677889999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred EE------CCC----------------------------------CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCC
Q 048801 312 WR------LPD----------------------------------GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD 351 (1715)
Q Consensus 312 WD------l~t----------------------------------g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D 351 (1715)
|. +.. ..++..|.+|.+.|.+..|...+. .++++++|
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~---Q~vTaSWD 293 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ---QMVTASWD 293 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc---eeeeeecc
Confidence 96 211 024567889999999999999887 89999999
Q ss_pred CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCc
Q 048801 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 352 GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~ 431 (1715)
.+..+||+.++..+.. ..+|....+.++-+|..+++++.+.|.+.++||++..
T Consensus 294 RTAnlwDVEtge~v~~-------------------------LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea-- 346 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNI-------------------------LTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA-- 346 (481)
T ss_pred ccceeeeeccCceecc-------------------------ccCcchhccccccCCcceEEEEeccCceeEeccchhh--
Confidence 9999999999875433 3457888999999999999999999999999999742
Q ss_pred cCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcc
Q 048801 432 EDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGK 511 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~ 511 (1715)
++.+..+.||...|+++.|..+ +.+++|+.|.+|+|||+++.+.
T Consensus 347 ------I~sV~VFQGHtdtVTS~vF~~d---------------------------d~vVSgSDDrTvKvWdLrNMRs--- 390 (481)
T KOG0300|consen 347 ------IQSVAVFQGHTDTVTSVVFNTD---------------------------DRVVSGSDDRTVKVWDLRNMRS--- 390 (481)
T ss_pred ------cceeeeecccccceeEEEEecC---------------------------CceeecCCCceEEEeeeccccC---
Confidence 5668899999999999999875 6899999999999999986331
Q ss_pred cccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEE----EEecCC
Q 048801 512 VGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVH----SLTGHS 587 (1715)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~----tL~gH~ 587 (1715)
++. ......+++.++.+..+..|+.-..+..|++||+...++.+ .-.+|.
T Consensus 391 -------------------------plA-TIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHr 444 (481)
T KOG0300|consen 391 -------------------------PLA-TIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHR 444 (481)
T ss_pred -------------------------cce-eeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccc
Confidence 111 12235678899999999999999999999999986443322 235899
Q ss_pred CCeEEEEEccCCC-cEEEEEeCCCcEEEEECCCC
Q 048801 588 ASSYVLDVHPFNP-RIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 588 ~~V~sLafSP~dg-~lLaSgs~DGtI~VWDl~tg 620 (1715)
..|+|++|....+ .-|+++|.|..+.-|.+...
T Consensus 445 RMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 445 RMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9999999965222 34678999999999998653
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.6e-24 Score=230.18 Aligned_cols=277 Identities=19% Similarity=0.279 Sum_probs=235.2
Q ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEE--ecCCCCCeEEEEECC-CCCEEEEEeCCCeeEEEE
Q 048801 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLAS--CRGHEGDITDLAVSS-NNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 237 ~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~t--L~gHs~~VtsLafSp-Dg~lLASGS~DGtIrVWD 313 (1715)
+.+++|...|.+|+|.-+|..|++|+.|+++.+|+++..+.... .++|.+.|-.++|+| ...+|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 56789999999999999999999999999999999987765544 578999999999998 457899999999999999
Q ss_pred CCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCC
Q 048801 314 LPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393 (1715)
Q Consensus 314 l~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~ 393 (1715)
+..++++..+....+ =.-+.|+|++. +++.++.|..|.+.|.++.+.......
T Consensus 94 ~r~~k~~~~i~~~~e-ni~i~wsp~g~---~~~~~~kdD~it~id~r~~~~~~~~~~----------------------- 146 (313)
T KOG1407|consen 94 IRSGKCTARIETKGE-NINITWSPDGE---YIAVGNKDDRITFIDARTYKIVNEEQF----------------------- 146 (313)
T ss_pred eccCcEEEEeeccCc-ceEEEEcCCCC---EEEEecCcccEEEEEecccceeehhcc-----------------------
Confidence 999999998874444 45678999998 899999999999999987664433221
Q ss_pred CCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccc
Q 048801 394 GLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 394 ~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
...+.-++|+-++.+|+.....|.|.|..... ++++..+.+|.....||.|+|+|
T Consensus 147 ---~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps---------Lkpv~si~AH~snCicI~f~p~G------------- 201 (313)
T KOG1407|consen 147 ---KFEVNEISWNNSNDLFFLTNGLGCVEILSYPS---------LKPVQSIKAHPSNCICIEFDPDG------------- 201 (313)
T ss_pred ---cceeeeeeecCCCCEEEEecCCceEEEEeccc---------cccccccccCCcceEEEEECCCC-------------
Confidence 33477888988888877777789999998864 56788999999999999999997
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW 553 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf 553 (1715)
++|++|+.|..+.+||+..- .+...+..+.-+|+.+.|
T Consensus 202 -------------ryfA~GsADAlvSLWD~~EL-----------------------------iC~R~isRldwpVRTlSF 239 (313)
T KOG1407|consen 202 -------------RYFATGSADALVSLWDVDEL-----------------------------ICERCISRLDWPVRTLSF 239 (313)
T ss_pred -------------ceEeeccccceeeccChhHh-----------------------------hhheeeccccCceEEEEe
Confidence 89999999999999998741 234455667889999999
Q ss_pred CCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCC
Q 048801 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYD 609 (1715)
Q Consensus 554 SPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~D 609 (1715)
|.||++||+|+.|..|-|=++.+|..+..+. +.++.+.|+||| ...+||-++.|
T Consensus 240 S~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~dd 293 (313)
T KOG1407|consen 240 SHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDD 293 (313)
T ss_pred ccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecC
Confidence 9999999999999999999999999999987 778889999999 66677666544
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-23 Score=238.85 Aligned_cols=386 Identities=18% Similarity=0.245 Sum_probs=283.0
Q ss_pred eEEEEcCCCCCeEEEEEcCCCCEEEEEeCCC--------cEEEEeCCCCcEEEEecCCCCCeEEEEECC--CCCEEEEE-
Q 048801 235 NIKKLRGHRDAVYCAIFDRSGRFVITGSDDR--------LVKIWSMETAFCLASCRGHEGDITDLAVSS--NNTLVASA- 303 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DG--------tIrIWDl~tgk~l~tL~gHs~~VtsLafSp--Dg~lLASG- 303 (1715)
..+.+.||...|.|++.+||.-.+++|-.-| .|+|||..+...+..+......|+|++||+ .|.+|+..
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec
Confidence 3455779999999999999998888875444 599999988888888888888999999998 35566554
Q ss_pred -eCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccC
Q 048801 304 -SNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSN 382 (1715)
Q Consensus 304 -S~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~ 382 (1715)
+.+..+.|||+..+............|....|+|.+. .|+.....|.+.+|+++.+.+..+..+....
T Consensus 176 ~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~---nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~-------- 244 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDP---NLIITCGKGHLYFWTLRGGSLVKRQGIFEKR-------- 244 (626)
T ss_pred CCCccccchhhchhhhccCcceeccceEEEEEeccCCC---cEEEEeCCceEEEEEccCCceEEEeeccccc--------
Confidence 3456789999998887777777778899999999987 4555555688999999988766554322111
Q ss_pred CCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccc
Q 048801 383 VPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVA 462 (1715)
Q Consensus 383 ~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~a 462 (1715)
....|.|++|.++|. +++|.++|.|.||+..+.+ ..+....|.+.|.+++...+|
T Consensus 245 -------------ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~---------~~k~~~aH~ggv~~L~~lr~G-- 299 (626)
T KOG2106|consen 245 -------------EKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNR---------ISKQVHAHDGGVFSLCMLRDG-- 299 (626)
T ss_pred -------------cceEEEEEEEcCCCC-EEeecCCceEEEEeCCCce---------EEeEeeecCCceEEEEEecCc--
Confidence 124599999999997 6789999999999986643 233344899999999998876
Q ss_pred ccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccc------cccccc----c--cCCCCCCCC
Q 048801 463 SRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGR------WTRAYH----L--KVPPPPLPP 530 (1715)
Q Consensus 463 s~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~------~~~~~~----l--~~~~~~~~~ 530 (1715)
.|++|+.|..|..||-. -+....+.. ....+. + -........
T Consensus 300 -------------------------tllSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~ 353 (626)
T KOG2106|consen 300 -------------------------TLLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQ 353 (626)
T ss_pred -------------------------cEeecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEE
Confidence 78889999999999822 111111000 000000 0 000000000
Q ss_pred CCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCC
Q 048801 531 QPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDG 610 (1715)
Q Consensus 531 ~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DG 610 (1715)
............+|......++..|+...++|++.|+.+++|+ ..+++.+.. -..++.|+.|+| .+ .++.|...|
T Consensus 354 Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G 428 (626)
T KOG2106|consen 354 GTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTATG 428 (626)
T ss_pred eeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeeccc
Confidence 1112233345567888899999999999999999999999999 455555443 356788999999 44 888999999
Q ss_pred cEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc--------cccccceeecCCCccEE
Q 048801 611 RTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ--------KDAKYDQFFLGDYRPLI 682 (1715)
Q Consensus 611 tI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~--------k~~~~~~~fs~D~r~L~ 682 (1715)
...|.|..+...+..-. ...++.+++|+|||.+||+|+.|+.|+||.+..+... -.....+-|+.|+..|.
T Consensus 429 ~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~ 507 (626)
T KOG2106|consen 429 RWFVLDTETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLV 507 (626)
T ss_pred eEEEEecccceeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEE
Confidence 99999998865555544 4889999999999999999999999999998754322 12234456888888777
Q ss_pred EcCCCC
Q 048801 683 RDSLGN 688 (1715)
Q Consensus 683 ~d~~g~ 688 (1715)
..+.+.
T Consensus 508 ~~S~d~ 513 (626)
T KOG2106|consen 508 SNSGDY 513 (626)
T ss_pred eccCce
Confidence 655444
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-24 Score=269.32 Aligned_cols=295 Identities=23% Similarity=0.340 Sum_probs=237.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEeCCC------------CcEEEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 048801 241 GHRDAVYCAIFDRSGRFVITGS--DDRLVKIWSMET------------AFCLASCRGHEGDITDLAVSSNNTLVASASND 306 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS--~DGtIrIWDl~t------------gk~l~tL~gHs~~VtsLafSpDg~lLASGS~D 306 (1715)
.+...|.++..+|||..+|||| .||.++||+.+. .+.+.+...|.+.|+|+.|++||++||+|++|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3456799999999999999999 899999998642 24456677899999999999999999999999
Q ss_pred CeeEEEECCC------------------CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCccee
Q 048801 307 FVIRVWRLPD------------------GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRI 368 (1715)
Q Consensus 307 GtIrVWDl~t------------------g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i 368 (1715)
+.|.||.... .+.+..+.+|...|..++|+|++. +|++++.|++|.||+..+.+.+..+
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~---~lvS~s~DnsViiwn~~tF~~~~vl 167 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS---LLVSVSLDNSVIIWNAKTFELLKVL 167 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc---EEEEecccceEEEEccccceeeeee
Confidence 9999998762 135678899999999999999987 9999999999999999877544433
Q ss_pred cCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCC
Q 048801 369 YLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE 448 (1715)
Q Consensus 369 ~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~ 448 (1715)
..|...|..+.|.|-|++||+-+.|++|+||++.+-. ..+.+.++.
T Consensus 168 -------------------------~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~---------i~k~It~pf 213 (942)
T KOG0973|consen 168 -------------------------RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG---------IEKSITKPF 213 (942)
T ss_pred -------------------------ecccccccceEECCccCeeeeecCCceEEEEEcccce---------eeEeeccch
Confidence 3467779999999999999999999999999975421 111111111
Q ss_pred CCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCC
Q 048801 449 NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPL 528 (1715)
Q Consensus 449 ~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~ 528 (1715)
..
T Consensus 214 ~~------------------------------------------------------------------------------ 215 (942)
T KOG0973|consen 214 EE------------------------------------------------------------------------------ 215 (942)
T ss_pred hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec----CCeEEEEECCCCceEEEEecCCCCeEEEEEccC------
Q 048801 529 PPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM----DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPF------ 598 (1715)
Q Consensus 529 ~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~----DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~------ 598 (1715)
.....-+..+.|||||.+|+++.. -.++.|.+-.+.+.-..|.||.+++.++.|+|.
T Consensus 216 -------------~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~ 282 (942)
T KOG0973|consen 216 -------------SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNN 282 (942)
T ss_pred -------------CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhcccc
Confidence 001123556889999999988532 346888888888888899999999999999872
Q ss_pred C------C----cEEEEEeCCCcEEEEECCCCceEEEEEc-ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 599 N------P----RIAMSAGYDGRTIVWDIWEGTPIRIYEI-GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 599 d------g----~lLaSgs~DGtI~VWDl~tgk~l~tl~~-h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
. + .++|+|+.|++|-||.....+++..... ....|.+++|+|||-.|++++.||.|.++.+...+
T Consensus 283 ~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 283 KNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred ccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 1 1 1789999999999999987787765542 35579999999999999999999999999997754
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.3e-24 Score=266.33 Aligned_cols=281 Identities=26% Similarity=0.407 Sum_probs=245.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEE-EeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCC
Q 048801 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISV-LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS 362 (1715)
Q Consensus 284 Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~-L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg 362 (1715)
+...|.+..|. +.++++++.|++|++|+..++..+.. +.||.+.|++++|...+. .|++|+.|.++++||+.+|
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~---~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGD---KLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCC---EEEEEecCCcEEeEecCCC
Confidence 56788888887 56899999999999999999999888 999999999999987444 8999999999999999999
Q ss_pred CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeee
Q 048801 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442 (1715)
Q Consensus 363 ~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~ 442 (1715)
++...+. +|...|.|+... +..+++|+.|.+|++|++.++ ..+.
T Consensus 282 ~C~~~l~-------------------------gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~---------~~l~ 325 (537)
T KOG0274|consen 282 ECTHSLQ-------------------------GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNG---------ACLN 325 (537)
T ss_pred cEEEEec-------------------------CCCceEEEEEcc--CceEeeccCCceEEEEeccCc---------ceEE
Confidence 9876653 356667777764 457888999999999999875 4578
Q ss_pred eecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccccccc
Q 048801 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLK 522 (1715)
Q Consensus 443 ~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~ 522 (1715)
.+.+|.++|+++..+. ..+++|+.||+|++||+.++
T Consensus 326 l~~~h~~~V~~v~~~~----------------------------~~lvsgs~d~~v~VW~~~~~---------------- 361 (537)
T KOG0274|consen 326 LLRGHTGPVNCVQLDE----------------------------PLLVSGSYDGTVKVWDPRTG---------------- 361 (537)
T ss_pred EeccccccEEEEEecC----------------------------CEEEEEecCceEEEEEhhhc----------------
Confidence 8888999999999983 69999999999999999863
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC-ceEEEEecCCCCeEEEEEccCCCc
Q 048801 523 VPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG-SLVHSLTGHSASSYVLDVHPFNPR 601 (1715)
Q Consensus 523 ~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg-~~l~tL~gH~~~V~sLafSP~dg~ 601 (1715)
.++..+.+|...|.++.+... ..+++|+.|++|++||+.++ +++.++.+|.+.|..+.+ .+.
T Consensus 362 -------------~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~---~~~ 424 (537)
T KOG0274|consen 362 -------------KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL---RDN 424 (537)
T ss_pred -------------eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc---ccc
Confidence 355667889999999988766 89999999999999999999 999999999999988877 457
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEEc-ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccccc
Q 048801 602 IAMSAGYDGRTIVWDIWEGTPIRIYEI-GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDA 668 (1715)
Q Consensus 602 lLaSgs~DGtI~VWDl~tgk~l~tl~~-h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~ 668 (1715)
+|++++.||+|++||+.+++++.++.+ +.+.|..+++. ...+++++.+|.+.+||+.+|+.....
T Consensus 425 ~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 425 FLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred eeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 899999999999999999999999998 56888888887 456889999999999999999876543
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-24 Score=259.03 Aligned_cols=332 Identities=20% Similarity=0.311 Sum_probs=260.5
Q ss_pred EEEEc-CCCCEEEEEeCCCcEEEEeCCCC------cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC--C
Q 048801 248 CAIFD-RSGRFVITGSDDRLVKIWSMETA------FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG--L 318 (1715)
Q Consensus 248 ~VafS-pDG~~LaTGS~DGtIrIWDl~tg------k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg--~ 318 (1715)
++..+ |.++||+|||.||.|++|++..- ..+..+..|...|.+++...+++.|+++|.|-+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 33344 46788999999999999998532 246788899999999999999999999999999999999877 6
Q ss_pred ceEEEeCCCCCeEEEEe-cCCCCcceEEEEecCCCcEEEEecCCCCC--cceecCCCCCCCccCccCCCCCCCCCCCCC-
Q 048801 319 PISVLRGHTGAVTAIAF-SPRPSAIYQLLSSSDDGTCRIWDARYSQY--SPRIYLPKPPDAITGKSNVPSNNGPSSSNG- 394 (1715)
Q Consensus 319 ~l~~L~gH~~~VtsLaf-SPdg~~~~~LaSgS~DGtVrIWDl~tg~~--l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~- 394 (1715)
++.++..|...|.||++ .++.. ++++||.|+.|.+||++++.. +.++ .+.......
T Consensus 109 c~stir~H~DYVkcla~~ak~~~---lvaSgGLD~~IflWDin~~~~~l~~s~-----------------n~~t~~sl~s 168 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNE---LVASGGLDRKIFLWDINTGTATLVASF-----------------NNVTVNSLGS 168 (735)
T ss_pred hHhhhhcccchheeeeecccCce---eEEecCCCccEEEEEccCcchhhhhhc-----------------cccccccCCC
Confidence 78889999999999999 55554 899999999999999998732 2111 111112222
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccc
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEE 474 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~ 474 (1715)
++...|.+++.++.|..|++|+..+.|++||.++. ..+..+.||+..|.++..+++|
T Consensus 169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~---------~kimkLrGHTdNVr~ll~~dDG-------------- 225 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC---------KKIMKLRGHTDNVRVLLVNDDG-------------- 225 (735)
T ss_pred CCccceeeeecCCcceEEEecCcccceEEeccccc---------cceeeeeccccceEEEEEcCCC--------------
Confidence 66788999999999999999999999999999885 3467788999999999999987
Q ss_pred ccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC
Q 048801 475 NVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS 554 (1715)
Q Consensus 475 ~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS 554 (1715)
..+++++.||+|++||+...+ ++.++..|..+|.++..+
T Consensus 226 ------------t~~ls~sSDgtIrlWdLgqQr-----------------------------Cl~T~~vH~e~VWaL~~~ 264 (735)
T KOG0308|consen 226 ------------TRLLSASSDGTIRLWDLGQQR-----------------------------CLATYIVHKEGVWALQSS 264 (735)
T ss_pred ------------CeEeecCCCceEEeeeccccc-----------------------------eeeeEEeccCceEEEeeC
Confidence 799999999999999998643 345567788889999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-------CceE----
Q 048801 555 LDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE-------GTPI---- 623 (1715)
Q Consensus 555 PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t-------gk~l---- 623 (1715)
|+-..+++|+.||.|+.=|+++......+-....+|..+..+-.+..+ -++..|+.|+-|...- +.+.
T Consensus 265 ~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~-WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T 343 (735)
T KOG0308|consen 265 PSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSV-WVTTTDSSIKRWKLEPDIALSVSGDLDFFST 343 (735)
T ss_pred CCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCc-eeeeccccceecCCccccccccCCCCCcccc
Confidence 999999999999999999998864444444455667777776534443 4567888899986531 1111
Q ss_pred --------------EEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 624 --------------RIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 624 --------------~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
.++. +..+|...+.-.|-+++++-+..|.+.+||+-.++..
T Consensus 344 ~~~~~~~~~~~tp~~vi~-Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~ 398 (735)
T KOG0308|consen 344 DSNNHSCDLTNTPDSVIP-GGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKV 398 (735)
T ss_pred cCCCccccccCCCceecc-CchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeeh
Confidence 1111 1223445566678899999999999999998766544
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-24 Score=239.50 Aligned_cols=285 Identities=19% Similarity=0.295 Sum_probs=243.7
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE--------eCCCCCeEEEEecCCCCcceEEEEecCCCcE
Q 048801 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL--------RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354 (1715)
Q Consensus 283 gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L--------~gH~~~VtsLafSPdg~~~~~LaSgS~DGtV 354 (1715)
|....+-|..|||||++|++|+.||.|-||+..+|+....+ --+..+|.|+.|+.|.. .|++|+.||.|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE---MlAsGsqDGkI 287 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE---MLASGSQDGKI 287 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH---HhhccCcCCcE
Confidence 45667889999999999999999999999999999765443 34778999999999987 89999999999
Q ss_pred EEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCC
Q 048801 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDS 434 (1715)
Q Consensus 355 rIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~ 434 (1715)
++|.+.+|.++.++. ..|...|+|+.|+.|+..+++++.|.+++|.-+.++
T Consensus 288 KvWri~tG~ClRrFd------------------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG----- 338 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFD------------------------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG----- 338 (508)
T ss_pred EEEEEecchHHHHhh------------------------hhhccCeeEEEEccCcchhhcccccceEEEeccccc-----
Confidence 999999999887763 246778999999999999999999999999999875
Q ss_pred CCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccc
Q 048801 435 EQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGR 514 (1715)
Q Consensus 435 ~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~ 514 (1715)
+++..+.+|...|+...|.++| ..+++++.||+|++|+..+..+...+.
T Consensus 339 ----K~LKEfrGHsSyvn~a~ft~dG--------------------------~~iisaSsDgtvkvW~~KtteC~~Tfk- 387 (508)
T KOG0275|consen 339 ----KCLKEFRGHSSYVNEATFTDDG--------------------------HHIISASSDGTVKVWHGKTTECLSTFK- 387 (508)
T ss_pred ----hhHHHhcCccccccceEEcCCC--------------------------CeEEEecCCccEEEecCcchhhhhhcc-
Confidence 4578899999999999999997 799999999999999998866543321
Q ss_pred ccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEEEecCCeEEEEECCCCceEEEEec---CCCCe
Q 048801 515 WTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAVDGSLVHSLTG---HSASS 590 (1715)
Q Consensus 515 ~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaTgs~DGtI~IWDl~sg~~l~tL~g---H~~~V 590 (1715)
..+....|+.+..-| +-..++++...++|+|.++ .|+.++.+.. ..+..
T Consensus 388 --------------------------~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdF 440 (508)
T KOG0275|consen 388 --------------------------PLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDF 440 (508)
T ss_pred --------------------------CCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCce
Confidence 122345677776666 4457788888899999997 6888888853 24456
Q ss_pred EEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 591 YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 591 ~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
.+.+.+| .+.++.+.+.|+.++.+.+.+|+.-+++..|...|..++-+|..+.||+-++||.+.+|.
T Consensus 441 i~~~lSp-kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 441 INAILSP-KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEecC-CCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 6777899 778888999999999999999999999999999999999999999999999999999995
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-24 Score=232.08 Aligned_cols=282 Identities=18% Similarity=0.291 Sum_probs=229.6
Q ss_pred EEEEECC--CCCEEEEE------eCCCeeEEEECCCCCceEEEe--CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEe
Q 048801 289 TDLAVSS--NNTLVASA------SNDFVIRVWRLPDGLPISVLR--GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358 (1715)
Q Consensus 289 tsLafSp--Dg~lLASG------S~DGtIrVWDl~tg~~l~~L~--gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWD 358 (1715)
.++.||| ++++.+++ ...|.+.|.++..+.-+..+. .-...+..++|++...+ .+++++.||+++|||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~--~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHEN--QVIAASGDGSLRLFD 89 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcc--eEEEEecCceEEEec
Confidence 5788998 44433322 235889999997555555443 24578999999998765 789999999999999
Q ss_pred cCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCC
Q 048801 359 ARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQP 437 (1715)
Q Consensus 359 l~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~ 437 (1715)
+... ..+......|..+|.++.|++ ++..+++++-|++|++|+...+
T Consensus 90 ~~~~------------------------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-------- 137 (311)
T KOG0277|consen 90 LTMP------------------------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-------- 137 (311)
T ss_pred cCCC------------------------CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC--------
Confidence 5321 123444566788999999998 5567888899999999998754
Q ss_pred ceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccc
Q 048801 438 IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTR 517 (1715)
Q Consensus 438 ~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~ 517 (1715)
..+.++.+|...|...+|+|.. ++.+++++.||++++||++..
T Consensus 138 -~Sv~Tf~gh~~~Iy~a~~sp~~-------------------------~nlfas~Sgd~~l~lwdvr~~----------- 180 (311)
T KOG0277|consen 138 -NSVQTFNGHNSCIYQAAFSPHI-------------------------PNLFASASGDGTLRLWDVRSP----------- 180 (311)
T ss_pred -cceEeecCCccEEEEEecCCCC-------------------------CCeEEEccCCceEEEEEecCC-----------
Confidence 3477899999999999999975 589999999999999998841
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEEEecCCeEEEEECCCC-ceEEEEecCCCCeEEEEE
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAVDG-SLVHSLTGHSASSYVLDV 595 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaTgs~DGtI~IWDl~sg-~~l~tL~gH~~~V~sLaf 595 (1715)
+. ...+..|...|.|+.|+. +...|+||+.|+.|++||+++. .++..+.+|.-.|..|.|
T Consensus 181 -----------------gk-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~ 242 (311)
T KOG0277|consen 181 -----------------GK-FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKF 242 (311)
T ss_pred -----------------Cc-eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEec
Confidence 22 223677888999999996 6678899999999999999874 568889999999999999
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCC-CceEEEEEcccceEEEEEEcC-CCCEEEEEeCCCeEEEEEC
Q 048801 596 HPFNPRIAMSAGYDGRTIVWDIWE-GTPIRIYEIGRFKLVDGKFSP-DGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 596 SP~dg~lLaSgs~DGtI~VWDl~t-gk~l~tl~~h~~~V~svafSP-DG~~LAsgs~DG~I~IWdl 659 (1715)
||....+|+++++|-+++|||... ..++.++..|..-|..+.||+ ++.++|+++.|+.++||+.
T Consensus 243 Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 243 SPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred CcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 998889999999999999999974 456677777777788899998 6789999999999999984
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-24 Score=235.85 Aligned_cols=295 Identities=18% Similarity=0.260 Sum_probs=234.9
Q ss_pred EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC------------C------CceEEEeCCCCCeEEEEecCCC
Q 048801 278 LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD------------G------LPISVLRGHTGAVTAIAFSPRP 339 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t------------g------~~l~~L~gH~~~VtsLafSPdg 339 (1715)
...+..|.+++.+.+|++||.++|+|+.|..|+|.|++. | -.+++|..|...|+++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 345678999999999999999999999999999999861 1 2367888999999999999998
Q ss_pred CcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC
Q 048801 340 SAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT 419 (1715)
Q Consensus 340 ~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG 419 (1715)
. .|++|+.|++|+++|+........+.. ......|.++.|+|.|.+|++|....
T Consensus 185 ~---ILiS~srD~tvKlFDfsK~saKrA~K~-----------------------~qd~~~vrsiSfHPsGefllvgTdHp 238 (430)
T KOG0640|consen 185 T---ILISGSRDNTVKLFDFSKTSAKRAFKV-----------------------FQDTEPVRSISFHPSGEFLLVGTDHP 238 (430)
T ss_pred h---eEEeccCCCeEEEEecccHHHHHHHHH-----------------------hhccceeeeEeecCCCceEEEecCCC
Confidence 7 899999999999999875432221111 11245699999999999999999999
Q ss_pred eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEE
Q 048801 420 FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAI 499 (1715)
Q Consensus 420 ~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIr 499 (1715)
++++||+.+.++.... ..-.+|.+.|+++.+++.+ .+.++++.||.|+
T Consensus 239 ~~rlYdv~T~Qcfvsa------nPd~qht~ai~~V~Ys~t~--------------------------~lYvTaSkDG~Ik 286 (430)
T KOG0640|consen 239 TLRLYDVNTYQCFVSA------NPDDQHTGAITQVRYSSTG--------------------------SLYVTASKDGAIK 286 (430)
T ss_pred ceeEEeccceeEeeec------CcccccccceeEEEecCCc--------------------------cEEEEeccCCcEE
Confidence 9999999986542222 2335799999999999987 7999999999999
Q ss_pred EEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCC-CCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc
Q 048801 500 IWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPT-PRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS 578 (1715)
Q Consensus 500 IWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h-~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~ 578 (1715)
|||--+++++..++. .| ...|.+..|+.+|++|++.+.|..|++|.+.+|+
T Consensus 287 lwDGVS~rCv~t~~~----------------------------AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 287 LWDGVSNRCVRTIGN----------------------------AHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred eeccccHHHHHHHHh----------------------------hcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 999776655443321 23 3468999999999999999999999999999999
Q ss_pred eEEEEecCC--CC---eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE-cccceEEEEEEcCCCCEEEEEeCCC
Q 048801 579 LVHSLTGHS--AS---SYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE-IGRFKLVDGKFSPDGTSIVLSDDVG 652 (1715)
Q Consensus 579 ~l~tL~gH~--~~---V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~-~h~~~V~svafSPDG~~LAsgs~DG 652 (1715)
++..+.|-. +. -+...|+.....+|.---..+.++-||.+++..+..+. +|.+.+..+.-||.+.-+.+|+.|-
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 999997642 11 12334555333334333446789999999987766554 5788899999999999999999999
Q ss_pred eEEEEE
Q 048801 653 QIYLLN 658 (1715)
Q Consensus 653 ~I~IWd 658 (1715)
.+++|-
T Consensus 419 raRFWy 424 (430)
T KOG0640|consen 419 RARFWY 424 (430)
T ss_pred eeeeee
Confidence 999995
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=242.79 Aligned_cols=298 Identities=20% Similarity=0.299 Sum_probs=240.9
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEE----EE-------------e-cCCCCCeEEEEECCCC
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCL----AS-------------C-RGHEGDITDLAVSSNN 297 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l----~t-------------L-~gHs~~VtsLafSpDg 297 (1715)
+..+..|.-+|+||+++||..++++++.||+|.=|++.+|+.. .. - ++|...|.++++|+||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 5667899999999999999999999999999999999888633 11 1 2788999999999999
Q ss_pred CEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCc
Q 048801 298 TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAI 377 (1715)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i 377 (1715)
+|||+|+.|..|.||+.++.+.+..+.+|.+.|.+++|-.... .|++++.|++|++|++.....+.++
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~---~lys~s~Drsvkvw~~~~~s~vetl--------- 282 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTS---ELYSASADRSVKVWSIDQLSYVETL--------- 282 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCcc---ceeeeecCCceEEEehhHhHHHHHH---------
Confidence 9999999999999999999999999999999999999987765 7999999999999999866544433
Q ss_pred cCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEc
Q 048801 378 TGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS 457 (1715)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafs 457 (1715)
.+|...|..|....-++.+-+|+.|.++++|++... ....+.+|.+.+.|++|-
T Consensus 283 ----------------yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee----------sqlifrg~~~sidcv~~I 336 (479)
T KOG0299|consen 283 ----------------YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE----------SQLIFRGGEGSIDCVAFI 336 (479)
T ss_pred ----------------hCCccceeeechhcccceEEeccccceeEEEecccc----------ceeeeeCCCCCeeeEEEe
Confidence 456778999998888898999999999999999532 234678899999999998
Q ss_pred cCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC
Q 048801 458 GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537 (1715)
Q Consensus 458 pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 537 (1715)
.+ ..|++|+.+|.|.+|++...+.+......... .+
T Consensus 337 n~---------------------------~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv-----------------~~ 372 (479)
T KOG0299|consen 337 ND---------------------------EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV-----------------IP 372 (479)
T ss_pred cc---------------------------cceeeccCCceEEEeeecccCceeEeeccccc-----------------cC
Confidence 75 69999999999999999876544332111100 00
Q ss_pred cccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC----ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 048801 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG----SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTI 613 (1715)
Q Consensus 538 ~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg----~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~ 613 (1715)
......++..|++++..|...++++|+.+|.|++|-+.+| +++..+. -.+.|++|+|++++.++++..|....+-
T Consensus 373 ~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlG 451 (479)
T KOG0299|consen 373 ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLG 451 (479)
T ss_pred CccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccc
Confidence 0011233468999999999999999999999999999887 3444554 6778999999995555776666665554
Q ss_pred EEE
Q 048801 614 VWD 616 (1715)
Q Consensus 614 VWD 616 (1715)
-|-
T Consensus 452 RW~ 454 (479)
T KOG0299|consen 452 RWW 454 (479)
T ss_pred eee
Confidence 453
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=253.86 Aligned_cols=266 Identities=20% Similarity=0.275 Sum_probs=202.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEE-------------EEecCCCCCeEEEEECC-CCCEEEEEeCCC
Q 048801 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCL-------------ASCRGHEGDITDLAVSS-NNTLVASASNDF 307 (1715)
Q Consensus 242 H~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l-------------~tL~gHs~~VtsLafSp-Dg~lLASGS~DG 307 (1715)
|-..|....+++|+..+++++.+.....|+...+..+ ..+.+|.+.|++++|+| ++.+||+|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3445566667777766777777777777775544322 24779999999999999 889999999999
Q ss_pred eeEEEECCCC-------CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCc
Q 048801 308 VIRVWRLPDG-------LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGK 380 (1715)
Q Consensus 308 tIrVWDl~tg-------~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~ 380 (1715)
+|+|||+.++ .++..+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~--iLaSgs~DgtVrIWDl~tg~~~~~l------------ 164 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN--VLASAGADMVVNVWDVERGKAVEVI------------ 164 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC--EEEEEeCCCEEEEEECCCCeEEEEE------------
Confidence 9999999765 357788999999999999998643 7999999999999999877643322
Q ss_pred cCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCC-eeEEEEccC
Q 048801 381 SNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEND-VNYVQFSGC 459 (1715)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~-V~sLafspd 459 (1715)
..|...|.+++|+|+|.+|++|+.|+.|+|||+++++ .+..+.+|.+. +..+.|.++
T Consensus 165 -------------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~---------~v~tl~~H~~~~~~~~~w~~~ 222 (493)
T PTZ00421 165 -------------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT---------IVSSVEAHASAKSQRCLWAKR 222 (493)
T ss_pred -------------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc---------EEEEEecCCCCcceEEEEcCC
Confidence 2356679999999999999999999999999998753 35567778764 346677775
Q ss_pred cccccccccccccccccccccCCcccCceEEEEc----CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCC
Q 048801 460 AVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS----RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRG 535 (1715)
Q Consensus 460 g~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS----~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 535 (1715)
+ ..|++++ .|+.|++||+++...
T Consensus 223 ~--------------------------~~ivt~G~s~s~Dr~VklWDlr~~~~--------------------------- 249 (493)
T PTZ00421 223 K--------------------------DLIITLGCSKSQQRQIMLWDTRKMAS--------------------------- 249 (493)
T ss_pred C--------------------------CeEEEEecCCCCCCeEEEEeCCCCCC---------------------------
Confidence 4 4555543 589999999975321
Q ss_pred CCcccc-cCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCceEEEEec-CCCCeEEEEEcc
Q 048801 536 GPRQRL-LPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSLVHSLTG-HSASSYVLDVHP 597 (1715)
Q Consensus 536 ~~~~~l-~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~~l~tL~g-H~~~V~sLafSP 597 (1715)
+.... ......+....|++++.+|++|+ .|+.|++||+.+++++..+.. +..++.+++|.|
T Consensus 250 -p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 250 -PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred -ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 00001 11233466678999999999887 599999999999988776643 455678888887
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-23 Score=246.27 Aligned_cols=375 Identities=18% Similarity=0.266 Sum_probs=280.8
Q ss_pred ccceeEEEEcCCCCCeEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCc---------------------EE--------
Q 048801 231 QKMQNIKKLRGHRDAVYCAIFDRSGR---FVITGSDDRLVKIWSMETAF---------------------CL-------- 278 (1715)
Q Consensus 231 ~~~k~l~~L~GH~~~Vt~VafSpDG~---~LaTGS~DGtIrIWDl~tgk---------------------~l-------- 278 (1715)
.+++.+..|.||.+.|.+++|...+. +||++|.|..|+||.+.-+. .+
T Consensus 179 d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is 258 (764)
T KOG1063|consen 179 DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRIS 258 (764)
T ss_pred cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEe
Confidence 36788999999999999999987554 89999999999999763211 11
Q ss_pred --EEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC--CceEE-----EeCCCCCeEEEEecCCCCcceEEEEec
Q 048801 279 --ASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG--LPISV-----LRGHTGAVTAIAFSPRPSAIYQLLSSS 349 (1715)
Q Consensus 279 --~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg--~~l~~-----L~gH~~~VtsLafSPdg~~~~~LaSgS 349 (1715)
..+.||.+.|+++.|+|.+..|++++.|.++.||...+. --+.. ..|..+...+..|+|++. .+++-+
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~---~ii~~g 335 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN---VIIAHG 335 (764)
T ss_pred hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC---EEEEec
Confidence 123499999999999999999999999999999986543 22222 224456788999999987 789999
Q ss_pred CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCC
Q 048801 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~ 429 (1715)
..|..++|...... .-.......+|...|+.++|.|.|.+|++.+.|-+-|+|-.-..
T Consensus 336 ~~Gg~hlWkt~d~~----------------------~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~ 393 (764)
T KOG1063|consen 336 RTGGFHLWKTKDKT----------------------FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR 393 (764)
T ss_pred ccCcEEEEeccCcc----------------------ceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccc
Confidence 99999999822211 11112234567888999999999999999999999999977522
Q ss_pred CccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCc--
Q 048801 430 SVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR-- 507 (1715)
Q Consensus 430 ~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~-- 507 (1715)
.+..+++....-|.-.++|++|-+.. ..|++|.....+++|+....-
T Consensus 394 -----q~~wHEiaRPQiHGyDl~c~~~vn~~--------------------------~~FVSgAdEKVlRvF~aPk~fv~ 442 (764)
T KOG1063|consen 394 -----QQEWHEIARPQIHGYDLTCLSFVNED--------------------------LQFVSGADEKVLRVFEAPKSFVK 442 (764)
T ss_pred -----ccceeeecccccccccceeeehccCC--------------------------ceeeecccceeeeeecCcHHHHH
Confidence 22367777778898999999998732 478888888888888654210
Q ss_pred --------------------cCccccccccccc---------------ccCCCCCC-CCCCCC---------CCCccccc
Q 048801 508 --------------------SHGKVGRWTRAYH---------------LKVPPPPL-PPQPPR---------GGPRQRLL 542 (1715)
Q Consensus 508 --------------------~~~~~~~~~~~~~---------------l~~~~~~~-~~~~~~---------g~~~~~l~ 542 (1715)
.+..++...+.+. ......+. ...++. -..+..+.
T Consensus 443 ~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY 522 (764)
T KOG1063|consen 443 SLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY 522 (764)
T ss_pred HHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhc
Confidence 0000011011000 00000000 000110 12345577
Q ss_pred CCCCCeeEEEeCCCCCEEEEEecCC-----eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 543 PTPRGVNMIVWSLDNRFVLAAIMDC-----RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 543 ~h~~~VtslafSPDG~~LaTgs~DG-----tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
+|...|.+++.+|+|++||+++... .|++|+..+...+..+.+|.-.|+.|+||| ++++|++.+.|.++.+|..
T Consensus 523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~ 601 (764)
T KOG1063|consen 523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEV 601 (764)
T ss_pred cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeee
Confidence 9999999999999999999988643 599999999999999999999999999999 8899999999999999987
Q ss_pred CCCc----eEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 618 WEGT----PIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 618 ~tgk----~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
.... .....+.|..-|+++.|+||+.++|+++.|..|.||....+
T Consensus 602 ~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 602 QEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred ecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 5432 23346678888999999999999999999999999998776
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.3e-24 Score=229.80 Aligned_cols=282 Identities=22% Similarity=0.345 Sum_probs=228.7
Q ss_pred EEEEEcC--CCCE-EEEE-----eCCCcEEEEeCCCCcEEEEec--CCCCCeEEEEECCC-CCEEEEEeCCCeeEEEECC
Q 048801 247 YCAIFDR--SGRF-VITG-----SDDRLVKIWSMETAFCLASCR--GHEGDITDLAVSSN-NTLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 247 t~VafSp--DG~~-LaTG-----S~DGtIrIWDl~tgk~l~tL~--gHs~~VtsLafSpD-g~lLASGS~DGtIrVWDl~ 315 (1715)
+++.||| ++++ +||+ ...|.+.|-++..++-+..+. .-...+.+++|+++ ...+++++.||+++|||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 5778988 3333 2232 246899999997555444443 24678999999985 4688899999999999964
Q ss_pred C-CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 316 D-GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 316 t-g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
- ..++..++.|...|.++.|++..+. .+++++.|++|++|+...++.+.+ ..
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~--~~ltsSWD~TiKLW~~~r~~Sv~T-------------------------f~ 144 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRR--IFLTSSWDGTIKLWDPNRPNSVQT-------------------------FN 144 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccce--eEEeeccCCceEeecCCCCcceEe-------------------------ec
Confidence 3 3688899999999999999997764 678889999999999876654443 23
Q ss_pred CCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccc
Q 048801 395 LQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 395 ~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
+|..-|...+|+| .+++|++++.||++++||++.. .+.+. +..|...|.|+.|+.-.
T Consensus 145 gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~--------gk~~~-i~ah~~Eil~cdw~ky~------------- 202 (311)
T KOG0277|consen 145 GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP--------GKFMS-IEAHNSEILCCDWSKYN------------- 202 (311)
T ss_pred CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC--------CceeE-EEeccceeEeecccccC-------------
Confidence 4677899999999 5689999999999999998753 33333 78899999999998643
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW 553 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf 553 (1715)
+..++||+.|+.|++||++.-+ .++..+.+|...|+.+.|
T Consensus 203 ------------~~vl~Tg~vd~~vr~wDir~~r----------------------------~pl~eL~gh~~AVRkvk~ 242 (311)
T KOG0277|consen 203 ------------HNVLATGGVDNLVRGWDIRNLR----------------------------TPLFELNGHGLAVRKVKF 242 (311)
T ss_pred ------------CcEEEecCCCceEEEEehhhcc----------------------------ccceeecCCceEEEEEec
Confidence 6899999999999999998622 345677889999999999
Q ss_pred CCCC-CEEEEEecCCeEEEEECCCC-ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 554 SLDN-RFVLAAIMDCRICVWNAVDG-SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 554 SPDG-~~LaTgs~DGtI~IWDl~sg-~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
||.. ..|++++.|-+++|||...+ .++.+..-|+.-|..+.|++.++.++|+++.|+.++||+.
T Consensus 243 Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 243 SPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred CcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9954 57899999999999999754 4566777899999999999999999999999999999984
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-22 Score=245.98 Aligned_cols=419 Identities=18% Similarity=0.222 Sum_probs=315.5
Q ss_pred CeEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEE
Q 048801 245 AVYCAIFDRSG--RFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISV 322 (1715)
Q Consensus 245 ~Vt~VafSpDG--~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~ 322 (1715)
.|+++ ++|.. +-|+.|+.+|.++||++.+++.+.+++++...|+++.=+|-=..+|.|..+|+|.|+++..++.+..
T Consensus 161 ~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s 239 (910)
T KOG1539|consen 161 FITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS 239 (910)
T ss_pred ceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE
Confidence 37776 56653 5688999999999999999999999999999999999999888999999999999999999999999
Q ss_pred EeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeE
Q 048801 323 LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILC 402 (1715)
Q Consensus 323 L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vts 402 (1715)
++...+.|++++|..||.. .|++|+..|.+.+||+...+....+. ..|.+.|..
T Consensus 240 Fk~d~g~VtslSFrtDG~p--~las~~~~G~m~~wDLe~kkl~~v~~------------------------nah~~sv~~ 293 (910)
T KOG1539|consen 240 FKQDWGRVTSLSFRTDGNP--LLASGRSNGDMAFWDLEKKKLINVTR------------------------NAHYGSVTG 293 (910)
T ss_pred EEccccceeEEEeccCCCe--eEEeccCCceEEEEEcCCCeeeeeee------------------------ccccCCccc
Confidence 9955699999999999984 78999999999999998766443321 234566888
Q ss_pred EEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCC
Q 048801 403 CAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNS 482 (1715)
Q Consensus 403 lafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s 482 (1715)
+.|.+....+++++.|..+++|-..++.. ..+.++.-.||..+..||.|....
T Consensus 294 ~~fl~~epVl~ta~~DnSlk~~vfD~~dg-----~pR~LR~R~GHs~Pp~~irfy~~~---------------------- 346 (910)
T KOG1539|consen 294 ATFLPGEPVLVTAGADNSLKVWVFDSGDG-----VPRLLRSRGGHSAPPSCIRFYGSQ---------------------- 346 (910)
T ss_pred ceecCCCceEeeccCCCceeEEEeeCCCC-----cchheeeccCCCCCchheeeeccC----------------------
Confidence 99999999999999999999997765422 134567778999999999998543
Q ss_pred cccCceEEEEcCCCeEEEEecCCCccCcccccc---cc--------cccccCCCCCCC-C--------------------
Q 048801 483 WFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW---TR--------AYHLKVPPPPLP-P-------------------- 530 (1715)
Q Consensus 483 ~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~---~~--------~~~l~~~~~~~~-~-------------------- 530 (1715)
...+.+++.|++++.+++.........++. .. ...+.+++.... .
T Consensus 347 ---g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~ 423 (910)
T KOG1539|consen 347 ---GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRS 423 (910)
T ss_pred ---cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcce
Confidence 368888889998888876543221111110 00 000111110000 0
Q ss_pred ------CCC-CCCC---cccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEE---ecCCCCeEEEEEcc
Q 048801 531 ------QPP-RGGP---RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL---TGHSASSYVLDVHP 597 (1715)
Q Consensus 531 ------~~~-~g~~---~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL---~gH~~~V~sLafSP 597 (1715)
... .|.. ...+......+++++.++.|++.+.|...|.|-+|++.+|-....+ ..|.++|++++...
T Consensus 424 ~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~ 503 (910)
T KOG1539|consen 424 AYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG 503 (910)
T ss_pred EEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC
Confidence 000 0000 0011112356899999999999999999999999999999999998 58999999999976
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc------ccccc
Q 048801 598 FNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK------DAKYD 671 (1715)
Q Consensus 598 ~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k------~~~~~ 671 (1715)
-++++++++.+|.+++||.....++..+.. ...+..+..+-....+|++.+|-.|.++|+.+.+..+ ....+
T Consensus 504 -~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd 581 (910)
T KOG1539|consen 504 -TNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITD 581 (910)
T ss_pred -CCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceee
Confidence 567899999999999999999988888874 4467788888888899999999999999998876554 33456
Q ss_pred eeecCCCccEEEcCC-CC--eeecccccccCcCCCCCcccCCCCCCCCCccchhhhhhcccccceeecCCCCeEEee
Q 048801 672 QFFLGDYRPLIRDSL-GN--VLDQETQLVPHRRNIQDPLCDSSMIPYEEPYQSMYQQRRLGALGIEWRPSSIKLAIG 745 (1715)
Q Consensus 672 ~~fs~D~r~L~~d~~-g~--vld~~tq~~p~~~~~~~~lvD~~~~p~p~~~q~~~q~r~~g~~~l~~sPdg~~lAvg 745 (1715)
..|++||++|+.... +. ++|- |.+ .++|.-....| +..+.|+|.|..||+.
T Consensus 582 ~~FS~DgrWlisasmD~tIr~wDl-----pt~-----~lID~~~vd~~-------------~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 582 MTFSPDGRWLISASMDSTIRTWDL-----PTG-----TLIDGLLVDSP-------------CTSLSFSPNGDFLATV 635 (910)
T ss_pred eEeCCCCcEEEEeecCCcEEEEec-----cCc-----ceeeeEecCCc-------------ceeeEECCCCCEEEEE
Confidence 789999999997654 33 3331 111 12222221111 1257899999999997
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=223.88 Aligned_cols=252 Identities=20% Similarity=0.296 Sum_probs=219.2
Q ss_pred ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCc
Q 048801 319 PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH 398 (1715)
Q Consensus 319 ~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~ 398 (1715)
.+..+.+|.++|.++.|+-+|+ |.++++.|.+|++|+...+.++.++ .+|+.
T Consensus 9 r~~~l~~~qgaV~avryN~dGn---Y~ltcGsdrtvrLWNp~rg~liktY-------------------------sghG~ 60 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGN---YCLTCGSDRTVRLWNPLRGALIKTY-------------------------SGHGH 60 (307)
T ss_pred hceeecccccceEEEEEccCCC---EEEEcCCCceEEeecccccceeeee-------------------------cCCCc
Confidence 4567889999999999999998 8999999999999999888776654 35788
Q ss_pred ceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccc
Q 048801 399 QILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 399 ~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
+|..++.+.|...|++|+.|..|.+||+.+++ .++.+.+|.+.|+.+.|+.+.
T Consensus 61 EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk---------v~Rr~rgH~aqVNtV~fNees------------------ 113 (307)
T KOG0316|consen 61 EVLDAALSSDNSKFASCGGDKAVQVWDVNTGK---------VDRRFRGHLAQVNTVRFNEES------------------ 113 (307)
T ss_pred eeeeccccccccccccCCCCceEEEEEcccCe---------eeeecccccceeeEEEecCcc------------------
Confidence 99999999999999999999999999999875 478899999999999999875
Q ss_pred ccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC
Q 048801 479 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~ 558 (1715)
..+++|+.|.++++||.++.. ..+++.+......|.++.+ .+.
T Consensus 114 --------SVv~SgsfD~s~r~wDCRS~s---------------------------~ePiQildea~D~V~Si~v--~~h 156 (307)
T KOG0316|consen 114 --------SVVASGSFDSSVRLWDCRSRS---------------------------FEPIQILDEAKDGVSSIDV--AEH 156 (307)
T ss_pred --------eEEEeccccceeEEEEcccCC---------------------------CCccchhhhhcCceeEEEe--ccc
Confidence 689999999999999998643 2345556666778888877 456
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceE--EEE
Q 048801 559 FVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKL--VDG 636 (1715)
Q Consensus 559 ~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V--~sv 636 (1715)
.|++|+.||+++.||++.|++...+-+| +|+++.|++ ++..++.++.|++|++.|-.+|+.++.+.+|...- .++
T Consensus 157 eIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 157 EIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred EEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecC-CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 8999999999999999999887776655 799999999 77777788999999999999999999999987654 467
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 637 KFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 637 afSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
+++.....+++|++||.|++||+-.+..+
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDETQI 262 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccceee
Confidence 88888899999999999999999877654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-23 Score=230.32 Aligned_cols=273 Identities=19% Similarity=0.287 Sum_probs=204.2
Q ss_pred CCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCC-CcEE-EEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC
Q 048801 241 GHRDAVYCAIFDR-SGRFVITGSDDRLVKIWSMET-AFCL-ASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG 317 (1715)
Q Consensus 241 GH~~~Vt~VafSp-DG~~LaTGS~DGtIrIWDl~t-gk~l-~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg 317 (1715)
.-.+.|.+|+||| ...+|+.||+||+|++|+++. |..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3567899999999 566777999999999999976 3433 345679999999999999999999999999999999999
Q ss_pred CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCC
Q 048801 318 LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQS 397 (1715)
Q Consensus 318 ~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~ 397 (1715)
.+..+..|.++|.++.|-+..... +|++|+.|.+|++||.+....+.++.+|.
T Consensus 105 -Q~~~v~~Hd~pvkt~~wv~~~~~~-cl~TGSWDKTlKfWD~R~~~pv~t~~LPe------------------------- 157 (347)
T KOG0647|consen 105 -QVSQVAAHDAPVKTCHWVPGMNYQ-CLVTGSWDKTLKFWDTRSSNPVATLQLPE------------------------- 157 (347)
T ss_pred -CeeeeeecccceeEEEEecCCCcc-eeEecccccceeecccCCCCeeeeeeccc-------------------------
Confidence 456677799999999999876543 89999999999999999777666655532
Q ss_pred cceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccc
Q 048801 398 HQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 398 ~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
.+.++.. -..+++++..+..|.+|++..+.. .+..+..+
T Consensus 158 -RvYa~Dv--~~pm~vVata~r~i~vynL~n~~t-----------e~k~~~Sp--------------------------- 196 (347)
T KOG0647|consen 158 -RVYAADV--LYPMAVVATAERHIAVYNLENPPT-----------EFKRIESP--------------------------- 196 (347)
T ss_pred -eeeehhc--cCceeEEEecCCcEEEEEcCCCcc-----------hhhhhcCc---------------------------
Confidence 2444433 234677777788888888865321 11111110
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
..-.++||+.-.|.
T Consensus 197 ------------------------------------------------------------------Lk~Q~R~va~f~d~ 210 (347)
T KOG0647|consen 197 ------------------------------------------------------------------LKWQTRCVACFQDK 210 (347)
T ss_pred ------------------------------------------------------------------ccceeeEEEEEecC
Confidence 11134555555555
Q ss_pred CEEEEEecCCeEEEEECCCC--ceEEEEecCCC---------CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEE
Q 048801 558 RFVLAAIMDCRICVWNAVDG--SLVHSLTGHSA---------SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY 626 (1715)
Q Consensus 558 ~~LaTgs~DGtI~IWDl~sg--~~l~tL~gH~~---------~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl 626 (1715)
...+.|+.+|.+-|..+..+ +.-.+|+.|.. .|++|+|+| --..|+|+|.||++.+||-.....+.+.
T Consensus 211 ~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~FWDkdar~kLk~s 289 (347)
T KOG0647|consen 211 DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFSFWDKDARTKLKTS 289 (347)
T ss_pred CceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceEEEecchhhhhhhcc
Confidence 55566666666666666554 33344555542 477899999 5567789999999999999888899998
Q ss_pred EcccceEEEEEEcCCCCEEEEE
Q 048801 627 EIGRFKLVDGKFSPDGTSIVLS 648 (1715)
Q Consensus 627 ~~h~~~V~svafSPDG~~LAsg 648 (1715)
..+..+|++++|+.+|.++|.+
T Consensus 290 ~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 290 ETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CcCCCccceeEecCCCCEEEEE
Confidence 8899999999999999999865
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=259.02 Aligned_cols=309 Identities=20% Similarity=0.294 Sum_probs=216.1
Q ss_pred cEEEEec-CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcE
Q 048801 276 FCLASCR-GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354 (1715)
Q Consensus 276 k~l~tL~-gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtV 354 (1715)
...+.+. .|.+.|+++.||+||+|||+|+.||.|+||.+...... ..+.+.-.++.+.-..... ...+.+..+.+
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~---~~~~~~~~~~~~~~~~~s~-~~p~~s~~~~~ 332 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERM---RVAEGDSSCMYFEYNANSQ-IEPSTSSEEKI 332 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchh---cccccccchhhhhhhhccc-cCccccccccc
Confidence 3344556 89999999999999999999999999999998654331 1122222222221111000 00000000000
Q ss_pred E--EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCcc
Q 048801 355 R--IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVE 432 (1715)
Q Consensus 355 r--IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~ 432 (1715)
. .-..+++.......++ .........+.....+|...|..+.|+.++ +|++++.|.+|++|++...
T Consensus 333 ~~~~s~~~~~~~s~~~~~p--------~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~--- 400 (712)
T KOG0283|consen 333 SSRTSSSRKGSQSPCVLLP--------LKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRK--- 400 (712)
T ss_pred cccccccccccCCccccCC--------CccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCc---
Confidence 0 0001111111110010 011122445566778899999999999775 8899999999999999764
Q ss_pred CCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccc
Q 048801 433 DSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKV 512 (1715)
Q Consensus 433 ~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~ 512 (1715)
.++.++ .|.+.|+||+|+|.. .++|++|+-||.|+||++...+.
T Consensus 401 ------~CL~~F-~HndfVTcVaFnPvD-------------------------DryFiSGSLD~KvRiWsI~d~~V---- 444 (712)
T KOG0283|consen 401 ------ECLKVF-SHNDFVTCVAFNPVD-------------------------DRYFISGSLDGKVRLWSISDKKV---- 444 (712)
T ss_pred ------ceeeEE-ecCCeeEEEEecccC-------------------------CCcEeecccccceEEeecCcCee----
Confidence 345544 599999999999965 68999999999999999976432
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe--cC----
Q 048801 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT--GH---- 586 (1715)
Q Consensus 513 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~--gH---- 586 (1715)
..|. .-..-|++++|+|||++.++|+.+|.+++|++...++..... -|
T Consensus 445 v~W~--------------------------Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 445 VDWN--------------------------DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred Eeeh--------------------------hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 1222 123569999999999999999999999999998887766542 11
Q ss_pred --CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccce--EEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 587 --SASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFK--LVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 587 --~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~--V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
...|+++.|.|.+..-|+..+.|..|+|+|..+-.++..|++.... -....|+.||++|+++++|..|+||+...-
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 2279999999966665666788999999999999999999875432 346799999999999999999999998543
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-23 Score=249.67 Aligned_cols=276 Identities=18% Similarity=0.318 Sum_probs=235.2
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeC-CC
Q 048801 249 AIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRG-HT 327 (1715)
Q Consensus 249 VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~g-H~ 327 (1715)
+.|+ ..+.||+|.. ..|.+|+..++.....+..+...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |.
T Consensus 183 ldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~ 260 (484)
T KOG0305|consen 183 LDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA 260 (484)
T ss_pred hhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC
Confidence 3466 4557777753 5899999999987777776789999999999999999999999999999999999999998 99
Q ss_pred CCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc
Q 048801 328 GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA 407 (1715)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp 407 (1715)
..|-+++|... .+.+|+.|+.|.++|++..+.... ....|...|..+.|++
T Consensus 261 ~rvg~laW~~~-----~lssGsr~~~I~~~dvR~~~~~~~------------------------~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 261 SRVGSLAWNSS-----VLSSGSRDGKILNHDVRISQHVVS------------------------TLQGHRQEVCGLKWSP 311 (484)
T ss_pred ceeEEEeccCc-----eEEEecCCCcEEEEEEecchhhhh------------------------hhhcccceeeeeEECC
Confidence 99999999943 789999999999999987653221 1456788999999999
Q ss_pred CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCc
Q 048801 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHD 487 (1715)
Q Consensus 408 dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~ 487 (1715)
|+.+||+|+.|+.+.|||... ..++..+..|.+.|.+++|+|-. ..
T Consensus 312 d~~~lASGgnDN~~~Iwd~~~---------~~p~~~~~~H~aAVKA~awcP~q-------------------------~~ 357 (484)
T KOG0305|consen 312 DGNQLASGGNDNVVFIWDGLS---------PEPKFTFTEHTAAVKALAWCPWQ-------------------------SG 357 (484)
T ss_pred CCCeeccCCCccceEeccCCC---------ccccEEEeccceeeeEeeeCCCc-------------------------cC
Confidence 999999999999999999954 23467788999999999999964 46
Q ss_pred eEEEEc--CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEE--E
Q 048801 488 NIVTCS--RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA--A 563 (1715)
Q Consensus 488 ~LaSgS--~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaT--g 563 (1715)
.||+|+ .|+.|++||+.++..+. .......|..|.|++..+-|++ |
T Consensus 358 lLAsGGGs~D~~i~fwn~~~g~~i~------------------------------~vdtgsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 358 LLATGGGSADRCIKFWNTNTGARID------------------------------SVDTGSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred ceEEcCCCcccEEEEEEcCCCcEec------------------------------ccccCCceeeEEEcCCCCEEEEecC
Confidence 888865 79999999998755322 2234567999999999977776 4
Q ss_pred ecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC
Q 048801 564 IMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 564 s~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
..++.|.||+..+.+.+..+.+|...|..++++| ++..+++|+.|.++++|++...
T Consensus 408 ~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 408 YSENQITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCcEEEEeccccceeeeecCCcceeEEEEECC-CCCEEEEecccCcEEeccccCC
Confidence 4567899999999999999999999999999999 7888999999999999999764
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-23 Score=247.46 Aligned_cols=282 Identities=23% Similarity=0.366 Sum_probs=240.3
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEE--EEecCCCCCeEE-EEECC-CCCEEEEEeCCC
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCL--ASCRGHEGDITD-LAVSS-NNTLVASASNDF 307 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l--~tL~gHs~~Vts-LafSp-Dg~lLASGS~DG 307 (1715)
..+..+.+.||...|..|++.+.. .++++|.||++++|+-.....+ ..+.+|.+-|.+ +++.+ ++-.|++|+.|+
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 356778899999999999887554 8999999999999997655444 457788888887 88875 555699999999
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
+|.+|.+.+..++.+|.+|...|.|+....++ .|++||+|.++++|.+....
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~----~~iSgSWD~TakvW~~~~l~------------------------ 133 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG----TLISGSWDSTAKVWRIGELV------------------------ 133 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcC----ceEecccccceEEecchhhh------------------------
Confidence 99999999999999999999999999988776 58999999999999764221
Q ss_pred CCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccc
Q 048801 388 GPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAM 467 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~ 467 (1715)
....+|...|+++++-|++ .++||+.|.+|++|.-. ..+.++.+|++.|+.+++.+++
T Consensus 134 ---~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~-----------~~l~tf~gHtD~VRgL~vl~~~------- 191 (745)
T KOG0301|consen 134 ---YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG-----------TLLKTFSGHTDCVRGLAVLDDS------- 191 (745)
T ss_pred ---cccCCcchheeeeeecCCC-cEEeccCcceeeeccCC-----------chhhhhccchhheeeeEEecCC-------
Confidence 1245678889999999988 89999999999999873 3578999999999999999863
Q ss_pred cccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCC
Q 048801 468 SDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG 547 (1715)
Q Consensus 468 ~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~ 547 (1715)
.|++|+.||.|++|++. +..+.+..+|..-
T Consensus 192 --------------------~flScsNDg~Ir~w~~~------------------------------ge~l~~~~ghtn~ 221 (745)
T KOG0301|consen 192 --------------------HFLSCSNDGSIRLWDLD------------------------------GEVLLEMHGHTNF 221 (745)
T ss_pred --------------------CeEeecCCceEEEEecc------------------------------CceeeeeeccceE
Confidence 89999999999999985 3456678889999
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 548 VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
|.++...+++..|++++.|++++||+.. .+.+.+.-..-.|+++.+-+ ++.+ ++|+.||.|+||...
T Consensus 222 vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~-NgDI-vvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 222 VYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL-NGDI-VVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee-CCCE-EEeccCceEEEEEec
Confidence 9999988999999999999999999975 78888876666899998877 5555 478899999999875
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-23 Score=230.95 Aligned_cols=296 Identities=22% Similarity=0.359 Sum_probs=230.6
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC------------------cEEEEecCCCCCeEEEEECCCC
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA------------------FCLASCRGHEGDITDLAVSSNN 297 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg------------------k~l~tL~gHs~~VtsLafSpDg 297 (1715)
...+..|.+++.+.+|++||.++||||.|..|+|.|++.. ..+++|..|..+|+++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 4567889999999999999999999999999999998611 3578889999999999999999
Q ss_pred CEEEEEeCCCeeEEEECCCCCce---EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCC
Q 048801 298 TLVASASNDFVIRVWRLPDGLPI---SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPP 374 (1715)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tg~~l---~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~ 374 (1715)
.+|++|+.|++|+++|+...... +.+. ...+|.+|.|+|.|. +|+.|..-.++++||+++-++...-
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGe---fllvgTdHp~~rlYdv~T~Qcfvsa------ 254 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGE---FLLVGTDHPTLRLYDVNTYQCFVSA------ 254 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCc---eEEEecCCCceeEEeccceeEeeec------
Confidence 99999999999999998654222 2232 557899999999998 8999999999999999987653211
Q ss_pred CCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee-cCCCC-Cee
Q 048801 375 DAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL-SGHEN-DVN 452 (1715)
Q Consensus 375 ~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l-~gH~~-~V~ 452 (1715)
.....|...|+++.+++.|++.++|+.||.|+|||--.+++ +.++ ..|.+ .|.
T Consensus 255 ----------------nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC---------v~t~~~AH~gsevc 309 (430)
T KOG0640|consen 255 ----------------NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC---------VRTIGNAHGGSEVC 309 (430)
T ss_pred ----------------CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH---------HHHHHhhcCCceee
Confidence 12345678899999999999999999999999999876543 3333 34544 788
Q ss_pred EEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCC
Q 048801 453 YVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQP 532 (1715)
Q Consensus 453 sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~ 532 (1715)
+..|..++ ++|++.+.|..+++|.+.+++.+.......
T Consensus 310 Sa~Ftkn~--------------------------kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg---------------- 347 (430)
T KOG0640|consen 310 SAVFTKNG--------------------------KYILSSGKDSTVKLWEISTGRMLKEYTGAG---------------- 347 (430)
T ss_pred eEEEccCC--------------------------eEEeecCCcceeeeeeecCCceEEEEecCC----------------
Confidence 89999886 899999999999999999877543321100
Q ss_pred CCCCCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCceEEEE-ecCCCCeEEEEEccCCCcEEEEEeCCC
Q 048801 533 PRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSLVHSL-TGHSASSYVLDVHPFNPRIAMSAGYDG 610 (1715)
Q Consensus 533 ~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~~l~tL-~gH~~~V~sLafSP~dg~lLaSgs~DG 610 (1715)
..+ ...--+...|+....+++.-. ..+.++-||.+++..+..+ .+|.+.+..+.-|| .+-.+++|+.|-
T Consensus 348 ~tg--------rq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP-~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 348 TTG--------RQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSP-VEPAFMTCSDDF 418 (430)
T ss_pred ccc--------chhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCC-CCCceeeecccc
Confidence 000 000112335565566665543 2467899999998776665 48999999999999 556677999999
Q ss_pred cEEEEEC
Q 048801 611 RTIVWDI 617 (1715)
Q Consensus 611 tI~VWDl 617 (1715)
.+++|--
T Consensus 419 raRFWyr 425 (430)
T KOG0640|consen 419 RARFWYR 425 (430)
T ss_pred eeeeeee
Confidence 9999964
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.8e-23 Score=234.98 Aligned_cols=284 Identities=21% Similarity=0.326 Sum_probs=243.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L 323 (1715)
-.|+++...+....++||+.|..+.++|....+.+.+|+||...|+.+.|+++...+++++.|..|+||.+........+
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 46888888888789999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEE
Q 048801 324 RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCC 403 (1715)
Q Consensus 324 ~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsl 403 (1715)
..|..+|+.+..+|.+. ||++++.||+..+.|++++..+...... ...-.++++
T Consensus 300 ~~h~~~V~~ls~h~tge---YllsAs~d~~w~Fsd~~~g~~lt~vs~~-----------------------~s~v~~ts~ 353 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGE---YLLSASNDGTWAFSDISSGSQLTVVSDE-----------------------TSDVEYTSA 353 (506)
T ss_pred ccccccceeeeeccCCc---EEEEecCCceEEEEEccCCcEEEEEeec-----------------------cccceeEEe
Confidence 99999999999999998 9999999999999999999876554321 113458999
Q ss_pred EEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCc
Q 048801 404 AYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW 483 (1715)
Q Consensus 404 afSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~ 483 (1715)
+|+|||.+|++|..||.|+|||+.... .+..+.+|+++|..|+|+.+|
T Consensus 354 ~fHpDgLifgtgt~d~~vkiwdlks~~---------~~a~Fpght~~vk~i~FsENG----------------------- 401 (506)
T KOG0289|consen 354 AFHPDGLIFGTGTPDGVVKIWDLKSQT---------NVAKFPGHTGPVKAISFSENG----------------------- 401 (506)
T ss_pred eEcCCceEEeccCCCceEEEEEcCCcc---------ccccCCCCCCceeEEEeccCc-----------------------
Confidence 999999999999999999999998642 467889999999999999988
Q ss_pred ccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEE
Q 048801 484 FCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAA 563 (1715)
Q Consensus 484 ~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTg 563 (1715)
-+|++++.|+.|++||++..+....+ ......+|.++.|.+.|.+|+++
T Consensus 402 ---Y~Lat~add~~V~lwDLRKl~n~kt~----------------------------~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 402 ---YWLATAADDGSVKLWDLRKLKNFKTI----------------------------QLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred ---eEEEEEecCCeEEEEEehhhccccee----------------------------eccccccceeEEEcCCCCeEEee
Confidence 58999999999999999853311110 11123368999999999999999
Q ss_pred ecCCeEEEEEC--CCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 564 IMDCRICVWNA--VDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 564 s~DGtI~IWDl--~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
+.|=.|++++- .+..++..+..|.+..+++.|.. ...+++++|.|..++|+.+
T Consensus 451 g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~-~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 451 GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGE-HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceeEEEEEecccccceeeehhhhcccccceeeecc-cceEEeeccchhheEEeec
Confidence 88777777763 35678888889999999999977 6689999999999888764
|
|
| >cd06071 Beach BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-25 Score=255.24 Aligned_cols=130 Identities=15% Similarity=0.171 Sum_probs=118.3
Q ss_pred ccCcccCCchhhHHHHhhhhhhhhhcccccccccchhHHHHHHHHhhccCchh---------------------hHHHHH
Q 048801 14 SLGKAPLKFSSTVQEMAQLEQQDMVANQVVEADVDLREVYFLIIHFLSSGPCQ---------------------RTLGLL 72 (1715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~i~ElyfLi~~fL~~gp~~---------------------~~~~~L 72 (1715)
.|+..-==|.|+..+|..|.. +++|++|+|||||++|+.|+|.+++. ..|+.+
T Consensus 121 ~fd~~~RlF~si~~~~~~~~~------~~~d~~ELIPEFf~~Pe~f~N~n~~~lg~~~g~~~~DV~LP~Wa~s~~~FV~~ 194 (275)
T cd06071 121 HFDAADRLFNSIPSSWRSASE------NPSDVKELIPEFYYLPEFFLNINKFDFGKQDGEKVNDVELPPWAKSPEEFIRK 194 (275)
T ss_pred CcCCcccchhhHHHHHHHHHc------cCCCcccCCchHhcCHHHHhCCCcccccccCCCcccceecCCCcCCHHHHHHH
Confidence 344434458999999999997 68899999999999999999887651 799999
Q ss_pred HHHHHhcCCCccccccc----cccCCCCCCCCCCCCCccccCcccccccCCCCChHHHHHHHHHHHhcCCCCCCCccCCC
Q 048801 73 WNELLEHQLLPRRYHAW----FSRSGVNSGNDNDDGISFPLSYNKLVERYPHIEWDHLVKLLRQLLLYKASPFHGRIGGI 148 (1715)
Q Consensus 73 ~ReALESeyVS~~LH~W----FGyKQrG~eAv~A~NVFh~LTYEG~Vdld~i~dp~~r~aie~QI~nFGQTP~QL~~~pH 148 (1715)
||+||||+|||++||+| |||||+|++|++|.|||||++|++.++.+... .++.+++.++.+|||+|.|||.+||
T Consensus 195 ~R~aLES~~VS~~L~~WIDLIFG~kq~G~~A~~a~Nvf~p~~Y~~~~~~~~~~--~~~~~~~~~~~~~Gq~P~QLF~~pH 272 (275)
T cd06071 195 HREALESEYVSKNLHHWIDLIFGYKQRGEEAVKAKNVFHPLTYEGSVDLDSID--VEREAIEAQINNFGQTPVQLFTKPH 272 (275)
T ss_pred HHHHHcccHhhhhhhhhhhhhcccccCCHHHHHhcCCCcccccCCccccchhh--HHHHHHHHHHHhcCCCcchhccCCC
Confidence 99999999999999999 99999999999999999999999999887765 7899999999999999999999999
Q ss_pred CCC
Q 048801 149 APN 151 (1715)
Q Consensus 149 PPr 151 (1715)
|+|
T Consensus 273 P~R 275 (275)
T cd06071 273 PKR 275 (275)
T ss_pred CCC
Confidence 985
|
This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins. |
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=226.98 Aligned_cols=249 Identities=20% Similarity=0.286 Sum_probs=203.3
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCC--EEEEEeCCCee
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT--LVASASNDFVI 309 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~--lLASGS~DGtI 309 (1715)
++.++..+..|.++|+|||.+ |.|+|+||.|-+|+|||+.+...+..+-.|.+.|+++.|.++-. .|++|+.||.|
T Consensus 32 ~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 32 TLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred eeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence 345677789999999999996 89999999999999999999999999999999999999998765 89999999999
Q ss_pred EEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCC
Q 048801 310 RVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 310 rVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
.+|++....++..+++|.+.|+.|+++|.++ +.++.+.|+.+++||+-.|+......+.
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K---LALsVg~D~~lr~WNLV~Gr~a~v~~L~------------------ 168 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGK---LALSVGGDQVLRTWNLVRGRVAFVLNLK------------------ 168 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEecCCCc---eEEEEcCCceeeeehhhcCccceeeccC------------------
Confidence 9999999999999999999999999999998 7889999999999999888754443321
Q ss_pred CCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccc
Q 048801 390 SSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSD 469 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~ 469 (1715)
...+.+.|+|.|.+|+.++.+ .|-||.+.+..+ +..+.
T Consensus 169 --------~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v---------~~~i~------------------------ 206 (362)
T KOG0294|consen 169 --------NKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASV---------FREIE------------------------ 206 (362)
T ss_pred --------CcceeeEEcCCCCEEEEEecc-EEEEEecccHhH---------hhhhh------------------------
Confidence 123448899999988888764 477787754221 00000
Q ss_pred cccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCee
Q 048801 470 AFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVN 549 (1715)
Q Consensus 470 ~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vt 549 (1715)
.+..+.
T Consensus 207 --------------------------------------------------------------------------~~~r~l 212 (362)
T KOG0294|consen 207 --------------------------------------------------------------------------NPKRIL 212 (362)
T ss_pred --------------------------------------------------------------------------ccccce
Confidence 001122
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEc-cCCCcEEEEEeCCCcEEEEECCCC
Q 048801 550 MIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVH-PFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 550 slafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafS-P~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
|+.|- ++..|++|+.|+.|.+||..++.++..+.+|...|.++.+- ...+.+|+|++.||.|+|||+...
T Consensus 213 ~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 213 CATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 33332 56688889999999999999999999999999999999842 225689999999999999999765
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-24 Score=239.86 Aligned_cols=287 Identities=21% Similarity=0.315 Sum_probs=233.6
Q ss_pred EEEEecCCCCCeEEEEECCCC-CEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEE
Q 048801 277 CLASCRGHEGDITDLAVSSNN-TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 277 ~l~tL~gHs~~VtsLafSpDg-~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVr 355 (1715)
.+..|.||...|.|++=+|.. ..+|+|+.||.|+|||+.+..++.++..|.+.|..|++... .+++++.|.+|+
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~-----~~~tvgdDKtvK 132 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQT-----SFFTVGDDKTVK 132 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEeccc-----ceEEecCCccee
Confidence 455678999999999999987 78999999999999999999999999999999999999882 589999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE 435 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~ 435 (1715)
.|-+... ...++ .....+..+.-+..+..++|++. .|.|||....
T Consensus 133 ~wk~~~~-p~~ti--------------------------lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~------ 177 (433)
T KOG0268|consen 133 QWKIDGP-PLHTI--------------------------LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD------ 177 (433)
T ss_pred eeeccCC-cceee--------------------------eccccccccccccccccccccCc--eeeecccccC------
Confidence 9987642 11111 11334566766777788998875 6899998642
Q ss_pred CCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccc
Q 048801 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW 515 (1715)
Q Consensus 436 ~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~ 515 (1715)
.++..+.-..+.|.++.|+|.. ...|++|+.|+.|.+||+++...+.++.
T Consensus 178 ---~Pv~smswG~Dti~svkfNpvE-------------------------TsILas~~sDrsIvLyD~R~~~Pl~KVi-- 227 (433)
T KOG0268|consen 178 ---NPVSSMSWGADSISSVKFNPVE-------------------------TSILASCASDRSIVLYDLRQASPLKKVI-- 227 (433)
T ss_pred ---CccceeecCCCceeEEecCCCc-------------------------chheeeeccCCceEEEecccCCccceee--
Confidence 3466677777889999999865 3689999999999999999765443321
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC-ceEEEEecCCCCeEEEE
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG-SLVHSLTGHSASSYVLD 594 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg-~~l~tL~gH~~~V~sLa 594 (1715)
....-+.|+|+|.+-.+++|..|..++.||++.. +++..+.+|.+.|.+++
T Consensus 228 ----------------------------~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVd 279 (433)
T KOG0268|consen 228 ----------------------------LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVD 279 (433)
T ss_pred ----------------------------eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEec
Confidence 1123467899998888889999999999999874 56788899999999999
Q ss_pred EccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcc-cceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 595 VHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG-RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 595 fSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h-~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
||| -|.-+++|++|.+|+||.+..+.....+... -..|.++.||-|.+++++|++|+.|++|.....
T Consensus 280 fsp-tG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 280 FSP-TGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred cCC-CcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 999 6677889999999999999887665555322 246999999999999999999999999986543
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=237.35 Aligned_cols=282 Identities=16% Similarity=0.248 Sum_probs=232.9
Q ss_pred CCCeEEEEECCCCC--EEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCC
Q 048801 285 EGDITDLAVSSNNT--LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS 362 (1715)
Q Consensus 285 s~~VtsLafSpDg~--lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg 362 (1715)
.+.|++++|+|... +.+++ .-.+.||+..+.....++......|.++.|..||. +|++|...|.|+|+|+.+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~--S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~---LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS--SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGR---LLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred cCcceeEecCCCCCCceEEec--ccEEEEEecchhhhhhhHHhhccceeEEEeecCCe---EEEccCCcCcEEEeccccH
Confidence 46899999999553 33333 34799999988888887877889999999999998 8999999999999996653
Q ss_pred CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceee
Q 048801 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHEL 441 (1715)
Q Consensus 363 ~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l 441 (1715)
..+..+ ..|..+|..+.|+|.+ ..|++|+.|+.+++||+.+.. ..
T Consensus 101 ~iLR~~-------------------------~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~---------v~ 146 (487)
T KOG0310|consen 101 VILRQL-------------------------YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY---------VQ 146 (487)
T ss_pred HHHHHH-------------------------hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE---------EE
Confidence 332222 3467789999999955 678889999999999998742 35
Q ss_pred eeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccc
Q 048801 442 DVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHL 521 (1715)
Q Consensus 442 ~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l 521 (1715)
..+.+|++.|.|.+|+|.. +..++||+.||.|++||+++..
T Consensus 147 ~~l~~htDYVR~g~~~~~~-------------------------~hivvtGsYDg~vrl~DtR~~~-------------- 187 (487)
T KOG0310|consen 147 AELSGHTDYVRCGDISPAN-------------------------DHIVVTGSYDGKVRLWDTRSLT-------------- 187 (487)
T ss_pred EEecCCcceeEeeccccCC-------------------------CeEEEecCCCceEEEEEeccCC--------------
Confidence 6789999999999999965 4689999999999999998621
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce-EEEEecCCCCeEEEEEccCCC
Q 048801 522 KVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL-VHSLTGHSASSYVLDVHPFNP 600 (1715)
Q Consensus 522 ~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~-l~tL~gH~~~V~sLafSP~dg 600 (1715)
.......|..+|..+.+-|.|..||+++. ..|+|||+.+|.. +..+..|...|+|+.+.. ++
T Consensus 188 ---------------~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~ 250 (487)
T KOG0310|consen 188 ---------------SRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DS 250 (487)
T ss_pred ---------------ceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec-CC
Confidence 22234567889999999999999998874 5899999996654 444555999999999988 66
Q ss_pred cEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 601 RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 601 ~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
..|++|+-||.|+|||+.+.+.+..+. -.++|.+++.+||++.+++|..+|.+.+-+...+
T Consensus 251 ~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 251 TRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred ceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 888899999999999999999999987 6789999999999999999999999888755443
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-21 Score=218.92 Aligned_cols=291 Identities=16% Similarity=0.228 Sum_probs=235.6
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecC--CCc
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD--DGT 353 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~--DGt 353 (1715)
+..+.+..-.+.|++|.|+++|.+|++++.|.+++|||..+|+.+.++..+...|..++|..... .++.++. |.+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~---~~i~sStk~d~t 81 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSN---TVIHSSTKEDDT 81 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCc---eEEEccCCCCCc
Confidence 44455666678999999999999999999999999999999999999999989999999988776 5555555 899
Q ss_pred EEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccC
Q 048801 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVED 433 (1715)
Q Consensus 354 VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~ 433 (1715)
|+..++.+.+.++.+ .+|...|.+++.+|-+..+++++.|++|++||++..++
T Consensus 82 IryLsl~dNkylRYF-------------------------~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c-- 134 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYF-------------------------PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC-- 134 (311)
T ss_pred eEEEEeecCceEEEc-------------------------CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC--
Confidence 999999888766543 46788899999999999999999999999999986543
Q ss_pred CCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc
Q 048801 434 SEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG 513 (1715)
Q Consensus 434 ~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~ 513 (1715)
...+... .-..++|.|.| -.+|++...+.|++||++.-.
T Consensus 135 -------qg~l~~~--~~pi~AfDp~G--------------------------LifA~~~~~~~IkLyD~Rs~d------ 173 (311)
T KOG1446|consen 135 -------QGLLNLS--GRPIAAFDPEG--------------------------LIFALANGSELIKLYDLRSFD------ 173 (311)
T ss_pred -------ceEEecC--CCcceeECCCC--------------------------cEEEEecCCCeEEEEEecccC------
Confidence 2222222 22357899987 477777777799999998521
Q ss_pred cccccccccCCCCCCCCCCCCCCCccccc---CCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCe
Q 048801 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLL---PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASS 590 (1715)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~~g~~~~~l~---~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V 590 (1715)
.++...+. +.....+.|.|||||++|+.++..+.+++.|.-+|..+.++.++...-
T Consensus 174 ---------------------kgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~ 232 (311)
T KOG1446|consen 174 ---------------------KGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG 232 (311)
T ss_pred ---------------------CCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC
Confidence 11111111 335568899999999999999999999999999999999998875543
Q ss_pred ---EEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEc-ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 591 ---YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEI-GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 591 ---~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~-h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
....|+| ++.++++|+.||+|.+|++.+|..+..+.+ +.+++.++.|.|.-..+|+++. .+.+|=...
T Consensus 233 ~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw~p~~ 304 (311)
T KOG1446|consen 233 NLPLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFWLPDE 304 (311)
T ss_pred CcceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--eEEEEeccc
Confidence 5678999 888999999999999999999999999998 5778999999998877777665 677775543
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-22 Score=249.22 Aligned_cols=251 Identities=18% Similarity=0.242 Sum_probs=188.5
Q ss_pred EeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCC-CCEEEEEeCCCeeEEEECCCCC--------ceEEEeCCCCCeE
Q 048801 261 GSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN-NTLVASASNDFVIRVWRLPDGL--------PISVLRGHTGAVT 331 (1715)
Q Consensus 261 GS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpD-g~lLASGS~DGtIrVWDl~tg~--------~l~~L~gH~~~Vt 331 (1715)
|+.++.|++|++.....+..+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667899999999888889999999999999999996 7899999999999999997642 3457889999999
Q ss_pred EEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCe
Q 048801 332 AIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTV 411 (1715)
Q Consensus 332 sLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~ 411 (1715)
+++|+|++.. .|++++.|++|+|||+.+++....+. +...|.+++|+++|.+
T Consensus 130 sVaf~P~g~~--iLaSgS~DgtIrIWDl~tg~~~~~i~--------------------------~~~~V~SlswspdG~l 181 (568)
T PTZ00420 130 IIDWNPMNYY--IMCSSGFDSFVNIWDIENEKRAFQIN--------------------------MPKKLSSLKWNIKGNL 181 (568)
T ss_pred EEEECCCCCe--EEEEEeCCCeEEEEECCCCcEEEEEe--------------------------cCCcEEEEEECCCCCE
Confidence 9999998762 56799999999999998876433221 1345899999999999
Q ss_pred EEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEE
Q 048801 412 FVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVT 491 (1715)
Q Consensus 412 LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaS 491 (1715)
|++++.|+.|+|||++++. .+..+.+|.+.+.+..+
T Consensus 182 Lat~s~D~~IrIwD~Rsg~---------~i~tl~gH~g~~~s~~v----------------------------------- 217 (568)
T PTZ00420 182 LSGTCVGKHMHIIDPRKQE---------IASSFHIHDGGKNTKNI----------------------------------- 217 (568)
T ss_pred EEEEecCCEEEEEECCCCc---------EEEEEecccCCceeEEE-----------------------------------
Confidence 9999999999999998753 24455666554332211
Q ss_pred EcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC----
Q 048801 492 CSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC---- 567 (1715)
Q Consensus 492 gS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG---- 567 (1715)
....|++++.+|++++.|+
T Consensus 218 ---------------------------------------------------------~~~~fs~d~~~IlTtG~d~~~~R 240 (568)
T PTZ00420 218 ---------------------------------------------------------WIDGLGGDDNYILSTGFSKNNMR 240 (568)
T ss_pred ---------------------------------------------------------EeeeEcCCCCEEEEEEcCCCCcc
Confidence 1124566777777776664
Q ss_pred eEEEEECCC-CceEEEEec--CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEc--ccceEEEEEEcCCC
Q 048801 568 RICVWNAVD-GSLVHSLTG--HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEI--GRFKLVDGKFSPDG 642 (1715)
Q Consensus 568 tI~IWDl~s-g~~l~tL~g--H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~--h~~~V~svafSPDG 642 (1715)
.|+|||+++ +.++..+.. +.+.+. ..|.++++.++++|+.|++|++|++..+.. ..+.. +..++..++|.|..
T Consensus 241 ~VkLWDlr~~~~pl~~~~ld~~~~~L~-p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 241 EMKLWDLKNTTSALVTMSIDNASAPLI-PHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEEECCCCCCceEEEEecCCccceE-EeeeCCCCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 688888874 455555432 223222 234455788999999999999999987742 22221 34567788888864
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=254.15 Aligned_cols=318 Identities=19% Similarity=0.282 Sum_probs=229.9
Q ss_pred CCCceeeeeeccccCcccccCC--CCcccccccccccC-----ccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeC
Q 048801 191 QADQVHGLSLREIGGGFKKHHR--APSVCSACYAIAKP-----STMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSD 263 (1715)
Q Consensus 191 ~~d~V~~ls~~~~g~~~~~~~~--~~~i~~~~~~~~~~-----~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~ 263 (1715)
...++-.+...+.|..++.+.. ...+. .|..... .....-.+.+.....|.+.|+|+.|++||.+||+||+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~--iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIV--IWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccce--eeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 3445667777777766665441 11111 1111100 0000123466778899999999999999999999999
Q ss_pred CCcEEEEeCCC------------------CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeC
Q 048801 264 DRLVKIWSMET------------------AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRG 325 (1715)
Q Consensus 264 DGtIrIWDl~t------------------gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~g 325 (1715)
|+.|.||.... .+++.+|.+|.+.|.+++|+|++.+||+++.|++|.||+..+.+.+.++.+
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence 99999998762 146778999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEE
Q 048801 326 HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAY 405 (1715)
Q Consensus 326 H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtslaf 405 (1715)
|.+.|..+.|.|-|+ +|++-+.|++|+||++.+-.....+.-+-.. ......+..+.|
T Consensus 170 H~s~VKGvs~DP~Gk---y~ASqsdDrtikvwrt~dw~i~k~It~pf~~-------------------~~~~T~f~RlSW 227 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGK---YFASQSDDRTLKVWRTSDWGIEKSITKPFEE-------------------SPLTTFFLRLSW 227 (942)
T ss_pred ccccccceEECCccC---eeeeecCCceEEEEEcccceeeEeeccchhh-------------------CCCcceeeeccc
Confidence 999999999999998 9999999999999997765544444322111 112344789999
Q ss_pred ccCCCeEEEecC----CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccC
Q 048801 406 NANGTVFVTGSS----DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 406 SpdG~~LatGs~----DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
||||.+|+++.. -.++.|.+-.+ ...-..+.||..++.++.|+|.-+-... . +......
T Consensus 228 SPDG~~las~nA~n~~~~~~~IieR~t---------Wk~~~~LvGH~~p~evvrFnP~lfe~~~------~--ng~~~~~ 290 (942)
T KOG0973|consen 228 SPDGHHLASPNAVNGGKSTIAIIERGT---------WKVDKDLVGHSAPVEVVRFNPKLFERNN------K--NGTSTQP 290 (942)
T ss_pred CCCcCeecchhhccCCcceeEEEecCC---------ceeeeeeecCCCceEEEEeChHHhcccc------c--cCCccCC
Confidence 999999998643 34566766644 3345678899999999999995321000 0 0000000
Q ss_pred CcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La 561 (1715)
. ..-..+++|+.|++|.||.....+.+..+ ..-....|..++|+|||..|+
T Consensus 291 ~-~~y~i~AvgSqDrSlSVW~T~~~RPl~vi----------------------------~~lf~~SI~DmsWspdG~~Lf 341 (942)
T KOG0973|consen 291 N-CYYCIAAVGSQDRSLSVWNTALPRPLFVI----------------------------HNLFNKSIVDMSWSPDGFSLF 341 (942)
T ss_pred C-cceEEEEEecCCccEEEEecCCCCchhhh----------------------------hhhhcCceeeeeEcCCCCeEE
Confidence 0 00137899999999999987643321111 111245799999999999999
Q ss_pred EEecCCeEEEEECCCCc
Q 048801 562 AAIMDCRICVWNAVDGS 578 (1715)
Q Consensus 562 Tgs~DGtI~IWDl~sg~ 578 (1715)
+++.||+|.+..+...+
T Consensus 342 acS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 342 ACSLDGTVALIHFEEKE 358 (942)
T ss_pred EEecCCeEEEEEcchHH
Confidence 99999999999886644
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=235.32 Aligned_cols=310 Identities=15% Similarity=0.191 Sum_probs=233.3
Q ss_pred CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC----ceEEE-eCCCCCeEEEEecCCCCcceEEEEec
Q 048801 275 AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL----PISVL-RGHTGAVTAIAFSPRPSAIYQLLSSS 349 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~----~l~~L-~gH~~~VtsLafSPdg~~~~~LaSgS 349 (1715)
+..-..+.+|+..|.++++.|.|..|++|+.|-+|++||+.... ..+.| ......|.+++|++.+. .|++.+
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~---~iLvvs 233 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD---QILVVS 233 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC---eEEEEe
Confidence 34455688999999999999999999999999999999986431 12222 23456899999999988 677777
Q ss_pred CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCC
Q 048801 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t 428 (1715)
.....+|+|-...+...... ... .........+|...++|.+|+|.. ..|++++.||+++||++..
T Consensus 234 g~aqakl~DRdG~~~~e~~K---GDQ----------YI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~ 300 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSK---GDQ----------YIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN 300 (641)
T ss_pred cCcceeEEccCCceeeeeec---cch----------hhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCC
Confidence 77889999865443322211 000 111233456788899999999965 5789999999999999986
Q ss_pred CCccCCCCCceeee--eecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCC
Q 048801 429 SSVEDSEQPIHELD--VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 506 (1715)
Q Consensus 429 ~~~~~~~~~~~~l~--~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~ 506 (1715)
.+. ....+. ...+..-+++.++|++++ ..|++|..||+|.+|+..+.
T Consensus 301 ~k~-----q~qVik~k~~~g~Rv~~tsC~~nrdg--------------------------~~iAagc~DGSIQ~W~~~~~ 349 (641)
T KOG0772|consen 301 TKS-----QLQVIKTKPAGGKRVPVTSCAWNRDG--------------------------KLIAAGCLDGSIQIWDKGSR 349 (641)
T ss_pred chh-----heeEEeeccCCCcccCceeeecCCCc--------------------------chhhhcccCCceeeeecCCc
Confidence 531 111111 112344578999999997 78999999999999998642
Q ss_pred ccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC--CeeEEEeCCCCCEEEEEecCCeEEEEECCCC-ceEEEE
Q 048801 507 RSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR--GVNMIVWSLDNRFVLAAIMDCRICVWNAVDG-SLVHSL 583 (1715)
Q Consensus 507 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~--~VtslafSPDG~~LaTgs~DGtI~IWDl~sg-~~l~tL 583 (1715)
.... ....-.+|.. .|+||+||+||++|++-+.|+++++||++.. +++.+.
T Consensus 350 ~v~p--------------------------~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~ 403 (641)
T KOG0772|consen 350 TVRP--------------------------VMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVR 403 (641)
T ss_pred cccc--------------------------ceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhh
Confidence 2100 1112234544 7999999999999999999999999999875 455555
Q ss_pred ecC--CCCeEEEEEccCCCcEEEEEe------CCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEE
Q 048801 584 TGH--SASSYVLDVHPFNPRIAMSAG------YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIY 655 (1715)
Q Consensus 584 ~gH--~~~V~sLafSP~dg~lLaSgs------~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~ 655 (1715)
.+- .-+-+.++||| +.++|++|. .-|++++||..+...+..+......|..+.|+|--+.|++|+.||.++
T Consensus 404 tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~ 482 (641)
T KOG0772|consen 404 TGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAH 482 (641)
T ss_pred cCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceE
Confidence 443 23456789999 778888875 357899999999999999988888999999999999999999999999
Q ss_pred EEE
Q 048801 656 LLN 658 (1715)
Q Consensus 656 IWd 658 (1715)
||=
T Consensus 483 vyY 485 (641)
T KOG0772|consen 483 VYY 485 (641)
T ss_pred EEE
Confidence 974
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-23 Score=233.87 Aligned_cols=290 Identities=18% Similarity=0.292 Sum_probs=230.6
Q ss_pred eEEEEcCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 235 NIKKLRGHRDAVYCAIFDRSG-RFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG-~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
-+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....++.++..|.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 355689999999999999977 7899999999999999999999999999999999999986 6788999999999999
Q ss_pred CCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCC
Q 048801 314 LPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393 (1715)
Q Consensus 314 l~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~ 393 (1715)
++- .++.++.+ ...+..|.-+..+. .++|+|.+ |.|||......+..+..
T Consensus 136 ~~~-~p~~tilg-~s~~~gIdh~~~~~---~FaTcGe~--i~IWD~~R~~Pv~smsw----------------------- 185 (433)
T KOG0268|consen 136 IDG-PPLHTILG-KSVYLGIDHHRKNS---VFATCGEQ--IDIWDEQRDNPVSSMSW----------------------- 185 (433)
T ss_pred ccC-Ccceeeec-cccccccccccccc---cccccCce--eeecccccCCccceeec-----------------------
Confidence 754 46777763 35567777666555 67888764 89999876554443322
Q ss_pred CCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccc
Q 048801 394 GLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFK 472 (1715)
Q Consensus 394 ~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~ 472 (1715)
....|.++.|+|.. .+|++|+.|+.|.+||++.+.. .+.+.. .-.-+.|+|+|.+
T Consensus 186 --G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P------l~KVi~----~mRTN~IswnPea------------ 241 (433)
T KOG0268|consen 186 --GADSISSVKFNPVETSILASCASDRSIVLYDLRQASP------LKKVIL----TMRTNTICWNPEA------------ 241 (433)
T ss_pred --CCCceeEEecCCCcchheeeeccCCceEEEecccCCc------cceeee----eccccceecCccc------------
Confidence 24558999999965 5677777999999999987542 222211 1234678999965
Q ss_pred ccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 048801 473 EENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIV 552 (1715)
Q Consensus 473 ~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsla 552 (1715)
..|++++.|..+..||++.- ..++....+|...|..+.
T Consensus 242 --------------fnF~~a~ED~nlY~~DmR~l----------------------------~~p~~v~~dhvsAV~dVd 279 (433)
T KOG0268|consen 242 --------------FNFVAANEDHNLYTYDMRNL----------------------------SRPLNVHKDHVSAVMDVD 279 (433)
T ss_pred --------------cceeeccccccceehhhhhh----------------------------cccchhhcccceeEEEec
Confidence 68999999999999999852 234556778899999999
Q ss_pred eCCCCCEEEEEecCCeEEEEECCCCceEEEEec-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceE
Q 048801 553 WSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG-HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPI 623 (1715)
Q Consensus 553 fSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g-H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l 623 (1715)
|||.|+-+++|+.|.+|+||.+..+...-.+.. .-..|.|+.||. |.+++++|+.|+.|++|.....+.+
T Consensus 280 fsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 280 FSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred cCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCcceeeeecchhhhc
Confidence 999999999999999999999988765444321 124589999999 8899999999999999987654444
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=235.35 Aligned_cols=400 Identities=17% Similarity=0.244 Sum_probs=280.7
Q ss_pred eeEEEEcCCCCCeEEEEEcCCCC---EEEEEeCCCcEEEEeCCCC--cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCe
Q 048801 234 QNIKKLRGHRDAVYCAIFDRSGR---FVITGSDDRLVKIWSMETA--FCLASCRGHEGDITDLAVSSNNTLVASASNDFV 308 (1715)
Q Consensus 234 k~l~~L~GH~~~Vt~VafSpDG~---~LaTGS~DGtIrIWDl~tg--k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGt 308 (1715)
..+..+.||.++|+|+.|-|+.. ++++|+.||.|++|.+... ..+.++.+|...+.|+ ........+.+.|++
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv--~a~~~~~~~~~ad~~ 122 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCV--VARSSVMTCKAADGT 122 (764)
T ss_pred eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEE--EeeeeEEEeeccCce
Confidence 46778999999999999999887 8999999999999999743 4456677766555544 333333333367888
Q ss_pred eEEEECCCC--------------------------------------------------CceEEEeCCCCCeEEEEecCC
Q 048801 309 IRVWRLPDG--------------------------------------------------LPISVLRGHTGAVTAIAFSPR 338 (1715)
Q Consensus 309 IrVWDl~tg--------------------------------------------------~~l~~L~gH~~~VtsLafSPd 338 (1715)
+.+||.+.. ..+..+.||.+.|.+|+|...
T Consensus 123 v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~ 202 (764)
T KOG1063|consen 123 VSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARL 202 (764)
T ss_pred EEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhcc
Confidence 899987321 123456799999999999987
Q ss_pred CCcceEEEEecCCCcEEEEecCCCCCcc----eecCCCCCCC---ccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCe
Q 048801 339 PSAIYQLLSSSDDGTCRIWDARYSQYSP----RIYLPKPPDA---ITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTV 411 (1715)
Q Consensus 339 g~~~~~LaSgS~DGtVrIWDl~tg~~l~----~i~~~~~~~~---i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~ 411 (1715)
+....+|+++|.|..|+||.+.-+.... .......... ..... ..-.........+|...|.++.|+|.+..
T Consensus 203 ~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~-i~~~is~eall~GHeDWV~sv~W~p~~~~ 281 (764)
T KOG1063|consen 203 GGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEE-IQYRISFEALLMGHEDWVYSVWWHPEGLD 281 (764)
T ss_pred CCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeee-EEEEEehhhhhcCcccceEEEEEccchhh
Confidence 7655699999999999999886443221 1111000000 00000 00000112344589999999999999988
Q ss_pred EEEecCCCeEEEEeCCCCCccC---------C----------------------------------CCCceeeeeecCCC
Q 048801 412 FVTGSSDTFARVWSACKSSVED---------S----------------------------------EQPIHELDVLSGHE 448 (1715)
Q Consensus 412 LatGs~DG~IrVWDl~t~~~~~---------~----------------------------------~~~~~~l~~l~gH~ 448 (1715)
|++++.|.++.+|......... . .........+.||.
T Consensus 282 LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~ 361 (764)
T KOG1063|consen 282 LLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHV 361 (764)
T ss_pred heecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccc
Confidence 9999999999999765431000 0 00001122345666
Q ss_pred CCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCC
Q 048801 449 NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPL 528 (1715)
Q Consensus 449 ~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~ 528 (1715)
+.|..|+|.|.| .+|++.+.|.+-++|-.-..+ ..|
T Consensus 362 ~~V~dv~W~psG--------------------------eflLsvs~DQTTRlFa~wg~q-----~~w------------- 397 (764)
T KOG1063|consen 362 DGVKDVDWDPSG--------------------------EFLLSVSLDQTTRLFARWGRQ-----QEW------------- 397 (764)
T ss_pred ccceeeeecCCC--------------------------CEEEEeccccceeeecccccc-----cce-------------
Confidence 666666666655 799999999999998443111 011
Q ss_pred CCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC--------------------------------
Q 048801 529 PPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD-------------------------------- 576 (1715)
Q Consensus 529 ~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s-------------------------------- 576 (1715)
..+.+-+.|...++|++|-+....+++|.....+++|+...
T Consensus 398 -------HEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLS 470 (764)
T KOG1063|consen 398 -------HEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLS 470 (764)
T ss_pred -------eeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccccc
Confidence 23445566888899999988666778888888889997641
Q ss_pred -----------Cc---------------------------------eEEEEecCCCCeEEEEEccCCCcEEEEEeCCC--
Q 048801 577 -----------GS---------------------------------LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDG-- 610 (1715)
Q Consensus 577 -----------g~---------------------------------~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DG-- 610 (1715)
|. .++.+.||...|++++.+| ++.++||++...
T Consensus 471 nKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ 549 (764)
T KOG1063|consen 471 NKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLK 549 (764)
T ss_pred CCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCc
Confidence 00 1223568999999999999 889999987543
Q ss_pred ---cEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----------cccccccceeecCC
Q 048801 611 ---RTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE----------SQKDAKYDQFFLGD 677 (1715)
Q Consensus 611 ---tI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe----------~~k~~~~~~~fs~D 677 (1715)
.|+||+..+...+..+..|.-.|+.++|||||++|++++.|.++.+|....+. .......+..|+||
T Consensus 550 ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd 629 (764)
T KOG1063|consen 550 EHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD 629 (764)
T ss_pred cceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcc
Confidence 58999999999999999999999999999999999999999999999975432 23445566778888
Q ss_pred CccEEEcCCCC
Q 048801 678 YRPLIRDSLGN 688 (1715)
Q Consensus 678 ~r~L~~d~~g~ 688 (1715)
...++..+.+.
T Consensus 630 e~~FaTaSRDK 640 (764)
T KOG1063|consen 630 EKYFATASRDK 640 (764)
T ss_pred cceeEEecCCc
Confidence 88877655444
|
|
| >PF02138 Beach: Beige/BEACH domain; InterPro: IPR000409 The BEACH domain is found in eukaryotic proteins that have diverse cellular functions ranging from lysosomal traffic to apoptosis and cytokinesisin vesicle trafficking, membrane dynamics, and receptor signaling | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-25 Score=252.36 Aligned_cols=128 Identities=13% Similarity=0.138 Sum_probs=89.8
Q ss_pred ccCcccCCchhhHHHHhhhhhhhhhcccccccccchhHHHHHHHHhhccCc-------------------hhhHHHHHHH
Q 048801 14 SLGKAPLKFSSTVQEMAQLEQQDMVANQVVEADVDLREVYFLIIHFLSSGP-------------------CQRTLGLLWN 74 (1715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~i~ElyfLi~~fL~~gp-------------------~~~~~~~L~R 74 (1715)
.|++.---|.|+...|..|.. ++.|++|+|||||++|+.|+|.+. ....|+.+||
T Consensus 120 ~fD~~~r~F~SI~~~~~~~~~------~~~d~~EliPEff~~Pe~f~N~n~~~~g~~~~~~dV~LP~Wa~s~~~FV~~~R 193 (270)
T PF02138_consen 120 KFDVPDRLFSSIEDTWNSVTE------NMNDVKELIPEFFYLPEFFKNINNFDLGKGEDVDDVELPPWAKSPFEFVYKHR 193 (270)
T ss_dssp S---CCCSS-BHHHHHHHHHH-------TT----B-GGGGT-GGGGS-TT-SS--BS-B-SS-B--TT-SSHHHHHHHHH
T ss_pred ccCCchHHHHHHHHHHHHhhc------CCccccccChhhhCCHHHhcccccccccCCCccceeecCCccchHHHHHHHHH
Confidence 355555569999999999887 888999999999999999998766 4589999999
Q ss_pred HHHhcCCCccccccc----cccCCCCCCCCCCCCCccccCcccccccCCCCChHHHHHHHHHHHhcCCCCCCCccCCCCC
Q 048801 75 ELLEHQLLPRRYHAW----FSRSGVNSGNDNDDGISFPLSYNKLVERYPHIEWDHLVKLLRQLLLYKASPFHGRIGGIAP 150 (1715)
Q Consensus 75 eALESeyVS~~LH~W----FGyKQrG~eAv~A~NVFh~LTYEG~Vdld~i~dp~~r~aie~QI~nFGQTP~QL~~~pHPP 150 (1715)
+||||+|||++||+| |||||+|++|++|.|||||++|++.+ +.|+.++.+++.++.+|||+|.|||.+|||+
T Consensus 194 ~aLES~~VS~~L~~WIDLIFG~kq~G~~A~~a~Nvf~p~~Y~~~~----~~~~~~~~~~~~~~~~~Gq~P~QLF~~pHP~ 269 (270)
T PF02138_consen 194 KALESDYVSQNLHHWIDLIFGYKQRGKEAVEAKNVFHPLTYEDSW----IEDPMEREAIEAQLKNFGQVPIQLFTKPHPK 269 (270)
T ss_dssp HHHCSHHHHTTHHHHHHHHTSCCCSCHHHHHTT--B-CCCSTTS-------SHHHHHHHHHHHHHC--------SS----
T ss_pred HHHhhhHHHhhhhHHHHHhhCcccccHHHHHHhhcccccCCCccc----cCCHHHHHHHHHHHHhcCCChHHHhCCCCCC
Confidence 999999999999999 99999999999999999999999988 7779999999999999999999999999998
Q ss_pred C
Q 048801 151 N 151 (1715)
Q Consensus 151 r 151 (1715)
|
T Consensus 270 R 270 (270)
T PF02138_consen 270 R 270 (270)
T ss_dssp -
T ss_pred C
Confidence 6
|
The name BEACH is derived from beige and Chediak-Higashi syndrome (CHS). CHS is a rare, autosomal recessive disorder that can cause severe immunodeficiency and albinism in humans and other mammals, and beige is the name for the CHS disease in mice [, ]. The BEACH domain was first described in the lysosomal-trafficking regulators Beige protein and its human homologue CHS protein Q99698 from SWISSPROT. It is also found in distantly related proteins like, for example, the FAN proteins O35242 from SWISSPROT and Q92636 from SWISSPROT which are factor associated with neutral sphingomyelinase activation []. It has also been described in Dictyostelium proteins Lvs []. The BEACH domain is usually followed by a series of WD repeats (PDOC00574 from PROSITEDOC). The function of the BEACH domain is unknown.; PDB: 1MI1_B 1T77_C. |
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=222.50 Aligned_cols=330 Identities=20% Similarity=0.267 Sum_probs=255.0
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEec
Q 048801 257 FVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFS 336 (1715)
Q Consensus 257 ~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafS 336 (1715)
.|++.-.+++++ .++++.+.||...|+.++......++.+++.|.+.+||.+++|.++.++.||.+.|++|.|+
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH 199 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec
Confidence 344455566543 24667789999999999998888899999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCC-------------CccC--ccCCCCCCCCCCCCCCCCccee
Q 048801 337 PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPD-------------AITG--KSNVPSNNGPSSSNGLQSHQIL 401 (1715)
Q Consensus 337 Pdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~-------------~i~g--~~~~~~~~~~~~~~~~h~~~Vt 401 (1715)
+.+. ++++++.|++-.||...-.-.++.-..+.... ...+ .........+...+.+|...|.
T Consensus 200 ~s~~---L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~ 276 (481)
T KOG0300|consen 200 NSGL---LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVS 276 (481)
T ss_pred cccc---eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceE
Confidence 9886 89999999999999743211111110100000 0000 0001111223445567888899
Q ss_pred EEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccC
Q 048801 402 CCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 402 slafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
++.|...|+.+++++.|.+..+||+.++. .+..+.||....+.++-+|..
T Consensus 277 a~dWL~gg~Q~vTaSWDRTAnlwDVEtge---------~v~~LtGHd~ELtHcstHptQ--------------------- 326 (481)
T KOG0300|consen 277 ACDWLAGGQQMVTASWDRTANLWDVETGE---------VVNILTGHDSELTHCSTHPTQ--------------------- 326 (481)
T ss_pred ehhhhcCcceeeeeeccccceeeeeccCc---------eeccccCcchhccccccCCcc---------------------
Confidence 99999999999999999999999999864 478899999999999888864
Q ss_pred CcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La 561 (1715)
.++++.+.|.+.++||++.. ...+..+.+|...|+++.|..+. .++
T Consensus 327 -----rLVvTsSrDtTFRLWDFRea----------------------------I~sV~VFQGHtdtVTS~vF~~dd-~vV 372 (481)
T KOG0300|consen 327 -----RLVVTSSRDTTFRLWDFREA----------------------------IQSVAVFQGHTDTVTSVVFNTDD-RVV 372 (481)
T ss_pred -----eEEEEeccCceeEeccchhh----------------------------cceeeeecccccceeEEEEecCC-cee
Confidence 78999999999999999831 12355688999999999999765 578
Q ss_pred EEecCCeEEEEECCCCc-eEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEE-----EcccceEEE
Q 048801 562 AAIMDCRICVWNAVDGS-LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY-----EIGRFKLVD 635 (1715)
Q Consensus 562 Tgs~DGtI~IWDl~sg~-~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl-----~~h~~~V~s 635 (1715)
+|+.|.+|+|||+++.+ ++.++. ...+++.++.+. ++.+++.--.+..|++||+. |..+..+ ++|..-|.|
T Consensus 373 SgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~-g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c 449 (481)
T KOG0300|consen 373 SGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTC 449 (481)
T ss_pred ecCCCceEEEeeeccccCcceeee-cCCccceeEeec-CCceEEeccCCceEEEEecC-CCccccCCcccccccceeeee
Confidence 89999999999998865 455665 456788999987 77788888888899999984 5444433 367778999
Q ss_pred EEEcCCC--CEEEEEeCCCeEEEEECCCC
Q 048801 636 GKFSPDG--TSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 636 vafSPDG--~~LAsgs~DG~I~IWdl~tG 662 (1715)
++|..+. .-|++++.|..+.-|.+...
T Consensus 450 ~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 450 CAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeccccCcccccccccccceeeeeEeccc
Confidence 9998764 34889999999999998653
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-23 Score=236.26 Aligned_cols=285 Identities=18% Similarity=0.332 Sum_probs=236.2
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC--ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCc
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL--PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT 353 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~--~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGt 353 (1715)
.....+..|.+.|..+.|-++...|++|+.|..|++|++..++ .+.+|.|..+.|+.+.|.+++. ++++++.|+.
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~---~~iAas~d~~ 242 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNK---HVIAASNDKN 242 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCc---eEEeecCCCc
Confidence 4455677899999999999998999999999999999987665 6778888899999999999988 8999999999
Q ss_pred EEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccC
Q 048801 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVED 433 (1715)
Q Consensus 354 VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~ 433 (1715)
+++|++...+...+ ..+|...|+++.|......+++|+.|.+|++||+....+
T Consensus 243 ~r~Wnvd~~r~~~T-------------------------LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C-- 295 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHT-------------------------LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC-- 295 (459)
T ss_pred eeeeeccchhhhhh-------------------------hcccccceeeehhhccccceeeccccchhhhhhhhhhhe--
Confidence 99999987765433 345788999999988777799999999999999976432
Q ss_pred CCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc
Q 048801 434 SEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG 513 (1715)
Q Consensus 434 ~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~ 513 (1715)
..++. ....++.|..++ ..+++|..|+.|++||.++....
T Consensus 296 -------~kt~l-~~S~cnDI~~~~----------------------------~~~~SgH~DkkvRfwD~Rs~~~~---- 335 (459)
T KOG0288|consen 296 -------SKTVL-PGSQCNDIVCSI----------------------------SDVISGHFDKKVRFWDIRSADKT---- 335 (459)
T ss_pred -------ecccc-ccccccceEecc----------------------------eeeeecccccceEEEeccCCcee----
Confidence 22111 122344444432 47889999999999999864311
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecC----CCC
Q 048801 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH----SAS 589 (1715)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH----~~~ 589 (1715)
. ..+..+.|+++..+++|..|.+++.|.++.+.|+++.+..+.+.+. ...
T Consensus 336 -------------------------~-sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 336 -------------------------R-SVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD 389 (459)
T ss_pred -------------------------e-EeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccc
Confidence 1 1223448999999999999999999999999999999988888642 334
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccce--EEEEEEcCCCCEEEEEeCCCeEEEE
Q 048801 590 SYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFK--LVDGKFSPDGTSIVLSDDVGQIYLL 657 (1715)
Q Consensus 590 V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~--V~svafSPDG~~LAsgs~DG~I~IW 657 (1715)
.+.+.||| ++.|+++|+.||.|+||++.+|++...+...... |++++|+|.|..|++++.++.+.+|
T Consensus 390 wtrvvfSp-d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 390 WTRVVFSP-DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cceeEECC-CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 78899999 8899999999999999999999999888865554 9999999999999999999999999
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-20 Score=225.38 Aligned_cols=331 Identities=18% Similarity=0.197 Sum_probs=247.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcE-EEEecCC-CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCc
Q 048801 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFC-LASCRGH-EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP 319 (1715)
Q Consensus 242 H~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~-l~tL~gH-s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~ 319 (1715)
-...|+|+||+.+.+.||.+-.||.|-||++..+-. ...+.|+ ...|-+++|+ ++..|++.+.+|.|.-||+.++++
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence 356899999999999999999999999999987643 4456665 4589999999 556788888999999999999999
Q ss_pred eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcc
Q 048801 320 ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399 (1715)
Q Consensus 320 l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~ 399 (1715)
...+....+.|++++.+|.+. .++.|+.||.+.++++..+.......+. ...+.
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~---~l~IgcddGvl~~~s~~p~~I~~~r~l~-----------------------rq~sR 156 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENT---ILAIGCDDGVLYDFSIGPDKITYKRSLM-----------------------RQKSR 156 (691)
T ss_pred eEEecCCCcceeEEEeCCccc---eEEeecCCceEEEEecCCceEEEEeecc-----------------------cccce
Confidence 999999999999999999987 8999999998888887766544333221 22567
Q ss_pred eeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecC-CCCCeeEEEEccCccccccccccccccccccc
Q 048801 400 ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG-HENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 400 VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g-H~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
|.+++|++++..|++|+.||.|++||+.++..... . ...+..+.. ...-|.++.|..+
T Consensus 157 vLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~-~-~~~~d~l~k~~~~iVWSv~~Lrd------------------- 215 (691)
T KOG2048|consen 157 VLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHI-I-TMQLDRLSKREPTIVWSVLFLRD------------------- 215 (691)
T ss_pred EEEEEecCCccEEEecccCceEEEEEcCCCceEEE-e-eecccccccCCceEEEEEEEeec-------------------
Confidence 99999999999999999999999999987542100 0 000111111 2334666666654
Q ss_pred ccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC
Q 048801 479 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~ 558 (1715)
..|++|..-|+|.+||...+. .++....|...|.+++.++++.
T Consensus 216 --------~tI~sgDS~G~V~FWd~~~gT-----------------------------LiqS~~~h~adVl~Lav~~~~d 258 (691)
T KOG2048|consen 216 --------STIASGDSAGTVTFWDSIFGT-----------------------------LIQSHSCHDADVLALAVADNED 258 (691)
T ss_pred --------CcEEEecCCceEEEEcccCcc-----------------------------hhhhhhhhhcceeEEEEcCCCC
Confidence 589999999999999988633 3445667888999999999999
Q ss_pred EEEEEecCCeEEEEECCCCce----EEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC---------------
Q 048801 559 FVLAAIMDCRICVWNAVDGSL----VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE--------------- 619 (1715)
Q Consensus 559 ~LaTgs~DGtI~IWDl~sg~~----l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t--------------- 619 (1715)
+|++++.|+.|.-|...++.. ......|...|.+++..+ ..+++||.|.++.+-....
T Consensus 259 ~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~---~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~ 335 (691)
T KOG2048|consen 259 RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE---NALISGGRDFTLAICSSREFKNMDHRQKNLFPAS 335 (691)
T ss_pred eEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec---ceEEecceeeEEEEccccccCchhhhcccccccc
Confidence 999999999999988766543 222346888888888765 2667777777666543211
Q ss_pred ---------------------------C---------ceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 620 ---------------------------G---------TPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 620 ---------------------------g---------k~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
. .+++........|.+.+.||||++||.+.- ..++||.+..
T Consensus 336 ~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~ 412 (691)
T KOG2048|consen 336 DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQP 412 (691)
T ss_pred ceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEecc
Confidence 0 001111123446888999999999998764 4566776653
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-22 Score=233.95 Aligned_cols=281 Identities=18% Similarity=0.256 Sum_probs=231.7
Q ss_pred CCCCeEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCc
Q 048801 242 HRDAVYCAIFDRSGR--FVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP 319 (1715)
Q Consensus 242 H~~~Vt~VafSpDG~--~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~ 319 (1715)
..+.|++++|+|... +.+|+| -.|.||+..+.....++......|.++.|-.||++||+|+..|.|+|+|+.+...
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i 102 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI 102 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHH
Confidence 346799999999543 344443 4799999998888888888889999999999999999999999999999877778
Q ss_pred eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcc
Q 048801 320 ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399 (1715)
Q Consensus 320 l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~ 399 (1715)
++.+.+|+.+|..+.|+|.+.. .|++|+.|+.+++||+.+... .+ ...+|...
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t--~l~s~sDd~v~k~~d~s~a~v--~~-----------------------~l~~htDY 155 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNT--MLVSGSDDKVVKYWDLSTAYV--QA-----------------------ELSGHTDY 155 (487)
T ss_pred HHHHhhccCceeEEEecccCCe--EEEecCCCceEEEEEcCCcEE--EE-----------------------EecCCcce
Confidence 8899999999999999998874 789999999999999987653 11 13457888
Q ss_pred eeEEEEccC-CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccc
Q 048801 400 ILCCAYNAN-GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 400 VtslafSpd-G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
|.|.+|+|. +.++++|+.||.|++||++... ..+. --.|..+|..+.|.|.|
T Consensus 156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~--------~~v~-elnhg~pVe~vl~lpsg------------------ 208 (487)
T KOG0310|consen 156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLT--------SRVV-ELNHGCPVESVLALPSG------------------ 208 (487)
T ss_pred eEeeccccCCCeEEEecCCCceEEEEEeccCC--------ceeE-EecCCCceeeEEEcCCC------------------
Confidence 999999995 5589999999999999998631 1222 23588899999999976
Q ss_pred ccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC
Q 048801 479 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~ 558 (1715)
..|++++ ...++|||+.++. ........|...|+|+++..++.
T Consensus 209 --------s~iasAg-Gn~vkVWDl~~G~----------------------------qll~~~~~H~KtVTcL~l~s~~~ 251 (487)
T KOG0310|consen 209 --------SLIASAG-GNSVKVWDLTTGG----------------------------QLLTSMFNHNKTVTCLRLASDST 251 (487)
T ss_pred --------CEEEEcC-CCeEEEEEecCCc----------------------------eehhhhhcccceEEEEEeecCCc
Confidence 5666665 5689999998543 12233445888999999999999
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 559 FVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 559 ~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
.|++|+-|+.|+|||+.+.+.++.+. ..++|.+++.+| ++..++.|..||.+.+-+.
T Consensus 252 rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~-dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 252 RLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSP-DDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred eEeecccccceEEEEccceEEEEeee-cccceeeEEecC-CCceEEEecccceeeeehh
Confidence 99999999999999998888888876 678899999999 6777888999998877644
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=236.11 Aligned_cols=283 Identities=19% Similarity=0.308 Sum_probs=235.8
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCce--EEEeCCCCCeEE-EEecCCCCcceEEEEecCCC
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI--SVLRGHTGAVTA-IAFSPRPSAIYQLLSSSDDG 352 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l--~~L~gH~~~Vts-LafSPdg~~~~~LaSgS~DG 352 (1715)
++.+.+.||...|..+++.+. ..++++|.||+++||+-.....+ ..+.+|.+-|.+ +++.+..+. .|++|+.|.
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~--~l~~g~~D~ 81 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKG--RLVVGGMDT 81 (745)
T ss_pred eeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCc--ceEeecccc
Confidence 456788999999999988754 48999999999999997655443 456678888877 888763332 699999999
Q ss_pred cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCcc
Q 048801 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVE 432 (1715)
Q Consensus 353 tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~ 432 (1715)
+|.+|...+.. +.....+|...|.|++...++. +++|+-|.+++||-..
T Consensus 82 ~i~v~~~~~~~-------------------------P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~----- 130 (745)
T KOG0301|consen 82 TIIVFKLSQAE-------------------------PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG----- 130 (745)
T ss_pred eEEEEecCCCC-------------------------chhhhhccccceeeeecCCcCc-eEecccccceEEecch-----
Confidence 99999876544 2334566788899999888887 9999999999999874
Q ss_pred CCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccc
Q 048801 433 DSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKV 512 (1715)
Q Consensus 433 ~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~ 512 (1715)
.+...+.+|+..|.++++.|. ..++||+.|.+|++|.-.
T Consensus 131 ------~l~~~l~gH~asVWAv~~l~e---------------------------~~~vTgsaDKtIklWk~~-------- 169 (745)
T KOG0301|consen 131 ------ELVYSLQGHTASVWAVASLPE---------------------------NTYVTGSADKTIKLWKGG-------- 169 (745)
T ss_pred ------hhhcccCCcchheeeeeecCC---------------------------CcEEeccCcceeeeccCC--------
Confidence 345668999999999999885 489999999999999543
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEE
Q 048801 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYV 592 (1715)
Q Consensus 513 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~s 592 (1715)
.....+.+|..-|+.+++-+++ .+++++.||.|++|++ +|+++..+.||+.-|++
T Consensus 170 -----------------------~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYs 224 (745)
T KOG0301|consen 170 -----------------------TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYS 224 (745)
T ss_pred -----------------------chhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEE
Confidence 3456788899999999998775 4667899999999999 89999999999999999
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 593 LDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 593 LafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
+.... +..+++|+|.|++++||+.. ++++.+......|+++.+-++|. |++|+.||.|+||.....
T Consensus 225 is~~~-~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 225 ISMAL-SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred EEecC-CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 99666 66788999999999999975 88888885566899999988886 788999999999997643
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.2e-21 Score=222.61 Aligned_cols=295 Identities=16% Similarity=0.203 Sum_probs=211.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEE-EEEeCCCeeEEEECCCCCceEEEeCCCCCeEEE
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV-ASASNDFVIRVWRLPDGLPISVLRGHTGAVTAI 333 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lL-ASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsL 333 (1715)
+..+++++.|+.|++||+.+++.+..+.++.. +.+++|+|++..+ ++++.++.|++||+.+++.+..+..+.. +..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 35788999999999999999999998886654 6789999999876 5677889999999999988877765543 5788
Q ss_pred EecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEE
Q 048801 334 AFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFV 413 (1715)
Q Consensus 334 afSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~La 413 (1715)
+|+|+++. .+++++.++.|++||+.+.+.+..+.. ...+.+++|+|+|.+++
T Consensus 79 ~~~~~g~~--l~~~~~~~~~l~~~d~~~~~~~~~~~~--------------------------~~~~~~~~~~~dg~~l~ 130 (300)
T TIGR03866 79 ALHPNGKI--LYIANEDDNLVTVIDIETRKVLAEIPV--------------------------GVEPEGMAVSPDGKIVV 130 (300)
T ss_pred EECCCCCE--EEEEcCCCCeEEEEECCCCeEEeEeeC--------------------------CCCcceEEECCCCCEEE
Confidence 99999872 344556789999999987654333211 12356799999999999
Q ss_pred EecCCC-eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceE-EE
Q 048801 414 TGSSDT-FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNI-VT 491 (1715)
Q Consensus 414 tGs~DG-~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~L-aS 491 (1715)
++..++ .+.+||..++.. +..+. ....+.+++|++++ ..| ++
T Consensus 131 ~~~~~~~~~~~~d~~~~~~---------~~~~~-~~~~~~~~~~s~dg--------------------------~~l~~~ 174 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEI---------VDNVL-VDQRPRFAEFTADG--------------------------KELWVS 174 (300)
T ss_pred EEecCCCeEEEEeCCCCeE---------EEEEE-cCCCccEEEECCCC--------------------------CEEEEE
Confidence 888765 567788865432 11111 12345678899886 445 55
Q ss_pred EcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEE-ecCCeEE
Q 048801 492 CSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAA-IMDCRIC 570 (1715)
Q Consensus 492 gS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTg-s~DGtI~ 570 (1715)
+..+|.|.+||+.+++....+. .... + ..........++|+|++++++++ +.++.|.
T Consensus 175 ~~~~~~v~i~d~~~~~~~~~~~-------~~~~----------~-----~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 175 SEIGGTVSVIDVATRKVIKKIT-------FEIP----------G-----VHPEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred cCCCCEEEEEEcCcceeeeeee-------eccc----------c-----cccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 5679999999998754322110 0000 0 00001123468899999986554 4567899
Q ss_pred EEECCCCceEEEEecCCCCeEEEEEccCCCcEEEE-EeCCCcEEEEECCCCceEEEEEcccceEEEEEEcC
Q 048801 571 VWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMS-AGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSP 640 (1715)
Q Consensus 571 IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaS-gs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSP 640 (1715)
+||+.+++.+..+. +...+.+++|+| ++.+|++ ++.+|.|.|||+.+++++..+..+ ...+.++|+|
T Consensus 233 v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 233 VVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 99999988876654 445789999999 4455554 467999999999999999999865 4558888875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-21 Score=204.26 Aligned_cols=301 Identities=21% Similarity=0.326 Sum_probs=233.5
Q ss_pred CceeeeeeccccCcccccCCCCccccccccc-ccCcc-----ccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 048801 193 DQVHGLSLREIGGGFKKHHRAPSVCSACYAI-AKPST-----MVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRL 266 (1715)
Q Consensus 193 d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~-~~~~~-----~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGt 266 (1715)
..|+.+.|.+.|+.++...+...+....|.. ..+.. .....-..++-+.|.+.|+|++|+|+|.+||||+.|.+
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence 4578899999999999887776655544432 22211 11122345566789999999999999999999999999
Q ss_pred EEEEeCCCCcEE-----EEecCCCCCeEEEEECC----CCCEEEEEeC-CCeeEEEECCCCCceEEEeCCCCCeEEEEec
Q 048801 267 VKIWSMETAFCL-----ASCRGHEGDITDLAVSS----NNTLVASASN-DFVIRVWRLPDGLPISVLRGHTGAVTAIAFS 336 (1715)
Q Consensus 267 IrIWDl~tgk~l-----~tL~gHs~~VtsLafSp----Dg~lLASGS~-DGtIrVWDl~tg~~l~~L~gH~~~VtsLafS 336 (1715)
|++.-.....+. ..+.-|.+.|..++|-. .+.+|++++. |..|++-|..+|+....+.+|++-|.++- +
T Consensus 113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-s 191 (350)
T KOG0641|consen 113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-S 191 (350)
T ss_pred EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-E
Confidence 999866533222 24667999999999964 3568888654 88899999999999999999999998873 2
Q ss_pred CCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec
Q 048801 337 PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS 416 (1715)
Q Consensus 337 Pdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs 416 (1715)
-++. .+++|+.|.+|++||++-..++..+.... .........|.+++..|.|++|++|-
T Consensus 192 wn~~---m~~sgsqdktirfwdlrv~~~v~~l~~~~------------------~~~glessavaav~vdpsgrll~sg~ 250 (350)
T KOG0641|consen 192 WNGA---MFASGSQDKTIRFWDLRVNSCVNTLDNDF------------------HDGGLESSAVAAVAVDPSGRLLASGH 250 (350)
T ss_pred ecCc---EEEccCCCceEEEEeeeccceeeeccCcc------------------cCCCcccceeEEEEECCCcceeeecc
Confidence 2333 79999999999999998766555432211 11123356799999999999999999
Q ss_pred CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC
Q 048801 417 SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG 496 (1715)
Q Consensus 417 ~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG 496 (1715)
.|....+||++.+ ..++.+..|...|.|+.|+|.. .++++|+.|.
T Consensus 251 ~dssc~lydirg~---------r~iq~f~phsadir~vrfsp~a--------------------------~yllt~syd~ 295 (350)
T KOG0641|consen 251 ADSSCMLYDIRGG---------RMIQRFHPHSADIRCVRFSPGA--------------------------HYLLTCSYDM 295 (350)
T ss_pred CCCceEEEEeeCC---------ceeeeeCCCccceeEEEeCCCc--------------------------eEEEEecccc
Confidence 9999999999875 4578889999999999999976 7999999999
Q ss_pred eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECC
Q 048801 497 SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV 575 (1715)
Q Consensus 497 sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~ 575 (1715)
.|++-|+...- ....++..+..|...+..+.|.|..-.+++.+.|.++.+|-+.
T Consensus 296 ~ikltdlqgdl-------------------------a~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 296 KIKLTDLQGDL-------------------------AHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEeecccch-------------------------hhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999887411 0112344456688888899999999999999999999999763
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=238.45 Aligned_cols=278 Identities=19% Similarity=0.273 Sum_probs=232.0
Q ss_pred EEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceec
Q 048801 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIY 369 (1715)
Q Consensus 290 sLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~ 369 (1715)
-+.|+ ..+.||.|.. ..|++|+-.++........+...|+++.|+++|. +|++|..+|.|.|||....+.+..+.
T Consensus 182 lldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~---~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGS---HLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred Hhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCC---EEEEeecCCeEEEEehhhcccccccc
Confidence 35677 3446666643 5899999999986666665689999999999998 89999999999999998765444331
Q ss_pred CCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC
Q 048801 370 LPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN 449 (1715)
Q Consensus 370 ~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~ 449 (1715)
..|...|-|++|+ +..+.+|+.++.|.++|++.... ....+.+|..
T Consensus 257 ------------------------~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~--------~~~~~~~H~q 302 (484)
T KOG0305|consen 257 ------------------------GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH--------VVSTLQGHRQ 302 (484)
T ss_pred ------------------------CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh--------hhhhhhcccc
Confidence 1267789999998 67899999999999999987532 2334889999
Q ss_pred CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCC
Q 048801 450 DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLP 529 (1715)
Q Consensus 450 ~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~ 529 (1715)
.|..+.|++++ .++++|+.|+.+.|||...
T Consensus 303 eVCgLkws~d~--------------------------~~lASGgnDN~~~Iwd~~~------------------------ 332 (484)
T KOG0305|consen 303 EVCGLKWSPDG--------------------------NQLASGGNDNVVFIWDGLS------------------------ 332 (484)
T ss_pred eeeeeEECCCC--------------------------CeeccCCCccceEeccCCC------------------------
Confidence 99999999987 8999999999999999853
Q ss_pred CCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEEE--ecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEE
Q 048801 530 PQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLAA--IMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSA 606 (1715)
Q Consensus 530 ~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaTg--s~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSg 606 (1715)
..+...+..|...|.+++|+| ...+||+| +.|++|++||..+|..+..+. ....|..|.|++....++.+.
T Consensus 333 -----~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 333 -----PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred -----ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEec
Confidence 235567788999999999999 45677875 469999999999999988876 445699999999665666665
Q ss_pred e-CCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 607 G-YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 607 s-~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
| .++.|.||+..+.+.+..+.+|...|..+++||||..|++|+.|.++++|++-..
T Consensus 407 G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 407 GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 4 4678999999999999999999999999999999999999999999999998654
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=218.20 Aligned_cols=304 Identities=20% Similarity=0.255 Sum_probs=218.4
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEE--EEec--CCCCCeEEEEECCCCCEEE-EEeCCCeeE
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCL--ASCR--GHEGDITDLAVSSNNTLVA-SASNDFVIR 310 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l--~tL~--gHs~~VtsLafSpDg~lLA-SGS~DGtIr 310 (1715)
+..|+||.+.|++++|+.||++|||++.|++|+||++.+.... +.++ ---+--+.++|+||-+-++ ++-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 3468999999999999999999999999999999999764221 1111 1123467899999876554 444556899
Q ss_pred EEECCC---CCceE---------EEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCcc
Q 048801 311 VWRLPD---GLPIS---------VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAIT 378 (1715)
Q Consensus 311 VWDl~t---g~~l~---------~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~ 378 (1715)
+|.+.. |.... .-+.|.-.|..+-....+. +|++++.|..|.+|++. |+.+..+....
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k---~imsas~dt~i~lw~lk-Gq~L~~idtnq------ 228 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK---YIMSASLDTKICLWDLK-GQLLQSIDTNQ------ 228 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCce---EEEEecCCCcEEEEecC-Cceeeeecccc------
Confidence 997642 32211 1124566677777766665 89999999999999998 77666553321
Q ss_pred CccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEcc
Q 048801 379 GKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSG 458 (1715)
Q Consensus 379 g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafsp 458 (1715)
..-+.++.||+|++|++++..-.|.||.+--.+- ...+....+..+.||...|..++|++
T Consensus 229 -------------------~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kd-G~fqev~rvf~LkGH~saV~~~aFsn 288 (420)
T KOG2096|consen 229 -------------------SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKD-GTFQEVKRVFSLKGHQSAVLAAAFSN 288 (420)
T ss_pred -------------------ccccceeeCCCCcEEEEecCCCCceEEEEEeccC-cchhhhhhhheeccchhheeeeeeCC
Confidence 1245688999999999999999999999854321 22344555678999999999999999
Q ss_pred CcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCc
Q 048801 459 CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPR 538 (1715)
Q Consensus 459 dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 538 (1715)
+. ..+++.+.||+++|||++-. |.....+. ....++.
T Consensus 289 ~S--------------------------~r~vtvSkDG~wriwdtdVr------------Y~~~qDpk-----~Lk~g~~ 325 (420)
T KOG2096|consen 289 SS--------------------------TRAVTVSKDGKWRIWDTDVR------------YEAGQDPK-----ILKEGSA 325 (420)
T ss_pred Cc--------------------------ceeEEEecCCcEEEeeccce------------EecCCCch-----HhhcCCc
Confidence 86 79999999999999998631 11111000 0001111
Q ss_pred ccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe-cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 539 QRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT-GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 539 ~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~-gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
-+....+.-..++++|.|+.||.+. ...|.++...+|+..-.+. .|...|.+|+|++ ++++++|+| |..++|..
T Consensus 326 -pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 326 -PLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVRVIR 400 (420)
T ss_pred -chhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-ceeeeeec
Confidence 1111122233799999999998654 5689999999998877774 6999999999999 888998876 66777765
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-20 Score=198.71 Aligned_cols=299 Identities=17% Similarity=0.244 Sum_probs=229.2
Q ss_pred EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC------C-----Cc-e---EEEeCCCCCeEEEEecCCCCcc
Q 048801 278 LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD------G-----LP-I---SVLRGHTGAVTAIAFSPRPSAI 342 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t------g-----~~-l---~~L~gH~~~VtsLafSPdg~~~ 342 (1715)
+.+|. .+..|.+++|+|.|.+.|+|+...+++|..... + .+ . +.-+.|.+.|+|.+|+|.+.
T Consensus 26 i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge-- 102 (350)
T KOG0641|consen 26 INILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE-- 102 (350)
T ss_pred EEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC--
Confidence 33444 466899999999999999999999999875422 1 11 1 12246889999999999998
Q ss_pred eEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc----CCCeEEEecC-
Q 048801 343 YQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA----NGTVFVTGSS- 417 (1715)
Q Consensus 343 ~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp----dG~~LatGs~- 417 (1715)
+|++|+.|.+|++.-++...+. ..+.......|.+.|..++|.. .|.+|++++.
T Consensus 103 -liatgsndk~ik~l~fn~dt~~--------------------~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 103 -LIATGSNDKTIKVLPFNADTCN--------------------ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred -eEEecCCCceEEEEeccccccc--------------------ccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence 8999999999999876543321 1223344566888999999964 3567776653
Q ss_pred CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEE-EccCcccccccccccccccccccccCCcccCceEEEEcCCC
Q 048801 418 DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ-FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG 496 (1715)
Q Consensus 418 DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLa-fspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG 496 (1715)
|..|++-|..++ ..+..+.+|++-|.++- |+. -.|++|+.|.
T Consensus 162 dc~iy~tdc~~g---------~~~~a~sghtghilalyswn~----------------------------~m~~sgsqdk 204 (350)
T KOG0641|consen 162 DCKIYITDCGRG---------QGFHALSGHTGHILALYSWNG----------------------------AMFASGSQDK 204 (350)
T ss_pred cceEEEeecCCC---------CcceeecCCcccEEEEEEecC----------------------------cEEEccCCCc
Confidence 555666666543 44778899999998763 332 5899999999
Q ss_pred eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC
Q 048801 497 SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD 576 (1715)
Q Consensus 497 sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s 576 (1715)
+|++||++-..++..+..-. ..+ --....|.+++..|.|++|++|..|....+||++.
T Consensus 205 tirfwdlrv~~~v~~l~~~~----------------~~~------glessavaav~vdpsgrll~sg~~dssc~lydirg 262 (350)
T KOG0641|consen 205 TIRFWDLRVNSCVNTLDNDF----------------HDG------GLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG 262 (350)
T ss_pred eEEEEeeeccceeeeccCcc----------------cCC------CcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence 99999998543332221100 000 01235689999999999999999999999999999
Q ss_pred CceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC----ceEEEEEcccceEEEEEEcCCCCEEEEEeCCC
Q 048801 577 GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG----TPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG 652 (1715)
Q Consensus 577 g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg----k~l~tl~~h~~~V~svafSPDG~~LAsgs~DG 652 (1715)
++.++.+..|...|.++.|+| +..++++|++|..|++-|+... -++.....|...+..+.|+|..-.+++.+.|.
T Consensus 263 ~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk 341 (350)
T KOG0641|consen 263 GRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK 341 (350)
T ss_pred CceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcc
Confidence 999999999999999999999 8899999999999999998532 23444556888899999999999999999999
Q ss_pred eEEEEECC
Q 048801 653 QIYLLNTG 660 (1715)
Q Consensus 653 ~I~IWdl~ 660 (1715)
++.+|-+.
T Consensus 342 t~tlwa~~ 349 (350)
T KOG0641|consen 342 TATLWALN 349 (350)
T ss_pred eEEEeccC
Confidence 99999763
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-20 Score=215.41 Aligned_cols=431 Identities=16% Similarity=0.212 Sum_probs=294.2
Q ss_pred ccCCcccCCCCCCCCceeeeeeccccC---cccccCCCCccccc--ccccccCccccccceeEEEEcCCCCCeEEEEEcC
Q 048801 179 KPLPAYLRWPHMQADQVHGLSLREIGG---GFKKHHRAPSVCSA--CYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDR 253 (1715)
Q Consensus 179 ~~p~~~~r~~~~~~d~V~~ls~~~~g~---~~~~~~~~~~i~~~--~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSp 253 (1715)
+.||+...|+...-..++.+.+...|. .|+..+....++.. ........|.++........+.-...|..+.|+|
T Consensus 131 ~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHP 210 (626)
T KOG2106|consen 131 PLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHP 210 (626)
T ss_pred cCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEecc
Confidence 344566667665555555555444431 12222222222222 1223345667777777777777888999999999
Q ss_pred CCC-EEEEEeCCCcEEEEeCCCCcEEEE---ecCC-CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCC
Q 048801 254 SGR-FVITGSDDRLVKIWSMETAFCLAS---CRGH-EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTG 328 (1715)
Q Consensus 254 DG~-~LaTGS~DGtIrIWDl~tgk~l~t---L~gH-s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~ 328 (1715)
.+. +++|++ -|.+.+|+++++.+.+. +..+ ..-|.|++|.++|. +++|..+|+|.||+..+.+..+....|.+
T Consensus 211 td~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~g 288 (626)
T KOG2106|consen 211 TDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDG 288 (626)
T ss_pred CCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCC
Confidence 665 555554 68999999998866554 3333 35799999999985 67999999999999988877777779999
Q ss_pred CeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCc----cCccCCC------------CCCCCCCC
Q 048801 329 AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAI----TGKSNVP------------SNNGPSSS 392 (1715)
Q Consensus 329 ~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i----~g~~~~~------------~~~~~~~~ 392 (1715)
.|.+++...+| .|++|+.|..|..||- .-+.+..+.+|.....+ .+...+. ........
T Consensus 289 gv~~L~~lr~G----tllSGgKDRki~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~ 363 (626)
T KOG2106|consen 289 GVFSLCMLRDG----TLLSGGKDRKIILWDD-NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT 363 (626)
T ss_pred ceEEEEEecCc----cEeecCccceEEeccc-cccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE
Confidence 99999999998 5888999999999993 33333334443322211 0111100 11112333
Q ss_pred CCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccc
Q 048801 393 NGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFK 472 (1715)
Q Consensus 393 ~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~ 472 (1715)
..+|..+.+.++.+|+...+++++.|+.+++|+- .+ +..-..-..++.|+.|+|.+
T Consensus 364 v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~--~k----------~~wt~~~~d~~~~~~fhpsg------------ 419 (626)
T KOG2106|consen 364 VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWND--HK----------LEWTKIIEDPAECADFHPSG------------ 419 (626)
T ss_pred EEecccceeeEEcCCChhheeeccCcceEEEccC--Cc----------eeEEEEecCceeEeeccCcc------------
Confidence 4567888999999999999999999999999992 21 11222345688899999964
Q ss_pred ccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 048801 473 EENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIV 552 (1715)
Q Consensus 473 ~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsla 552 (1715)
.++.|...|...+.|..+...+ .+.....+++++.
T Consensus 420 ---------------~va~Gt~~G~w~V~d~e~~~lv------------------------------~~~~d~~~ls~v~ 454 (626)
T KOG2106|consen 420 ---------------VVAVGTATGRWFVLDTETQDLV------------------------------TIHTDNEQLSVVR 454 (626)
T ss_pred ---------------eEEEeeccceEEEEecccceeE------------------------------EEEecCCceEEEE
Confidence 8999999999999998863311 1122256799999
Q ss_pred eCCCCCEEEEEecCCeEEEEECCC-CceEEEE-ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEE-----
Q 048801 553 WSLDNRFVLAAIMDCRICVWNAVD-GSLVHSL-TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI----- 625 (1715)
Q Consensus 553 fSPDG~~LaTgs~DGtI~IWDl~s-g~~l~tL-~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t----- 625 (1715)
|+|+|.+||.|+.|+.|+||.+.. |.....+ ..|..+|+.+.|++ |+.++.+-+.|-.|..|.....+.+..
T Consensus 455 ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvk 533 (626)
T KOG2106|consen 455 YSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS-DSQFLVSNSGDYEILYWKPSECKQITSVKDVK 533 (626)
T ss_pred EcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC-CCceEEeccCceEEEEEccccCcccceeccee
Confidence 999999999999999999999865 4443333 23458999999999 888999999999999995432221111
Q ss_pred ---------EE----cccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc---------cccccceeecCCCccEEE
Q 048801 626 ---------YE----IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ---------KDAKYDQFFLGDYRPLIR 683 (1715)
Q Consensus 626 ---------l~----~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~---------k~~~~~~~fs~D~r~L~~ 683 (1715)
|. .+...|..++-+.+.++||+|++.|.|++|.-.--+.. ......+.|+-+-..|+.
T Consensus 534 W~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~ 613 (626)
T KOG2106|consen 534 WATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLIS 613 (626)
T ss_pred eeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEe
Confidence 11 12234556677888899999999999999985322111 233344556655555554
Q ss_pred cCC
Q 048801 684 DSL 686 (1715)
Q Consensus 684 d~~ 686 (1715)
...
T Consensus 614 tg~ 616 (626)
T KOG2106|consen 614 TGK 616 (626)
T ss_pred cCC
Confidence 433
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-21 Score=239.84 Aligned_cols=267 Identities=16% Similarity=0.188 Sum_probs=198.8
Q ss_pred CCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc
Q 048801 328 GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA 407 (1715)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp 407 (1715)
..|....+++++. .+++++.+.....|+...+..+ +.... .|. .........+|...|++++|+|
T Consensus 21 ~~i~~~~~~~d~~---~~~~~n~~~~a~~w~~~gg~~v--~~~~~-----~G~-----~~~~~~~l~GH~~~V~~v~fsP 85 (493)
T PTZ00421 21 LNVTPSTALWDCS---NTIACNDRFIAVPWQQLGSTAV--LKHTD-----YGK-----LASNPPILLGQEGPIIDVAFNP 85 (493)
T ss_pred eccccccccCCCC---CcEeECCceEEEEEecCCceEE--eeccc-----ccc-----CCCCCceEeCCCCCEEEEEEcC
Confidence 4455566666755 5788888888888987655321 11110 011 0011223457889999999999
Q ss_pred -CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccC
Q 048801 408 -NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCH 486 (1715)
Q Consensus 408 -dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~ 486 (1715)
++.+|++|+.||.|+|||+.+.... ......+..+.+|...|.+++|+|.+ .
T Consensus 86 ~d~~~LaSgS~DgtIkIWdi~~~~~~--~~~~~~l~~L~gH~~~V~~l~f~P~~-------------------------~ 138 (493)
T PTZ00421 86 FDPQKLFTASEDGTIMGWGIPEEGLT--QNISDPIVHLQGHTKKVGIVSFHPSA-------------------------M 138 (493)
T ss_pred CCCCEEEEEeCCCEEEEEecCCCccc--cccCcceEEecCCCCcEEEEEeCcCC-------------------------C
Confidence 8899999999999999999764321 11123466789999999999999975 3
Q ss_pred ceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC
Q 048801 487 DNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD 566 (1715)
Q Consensus 487 ~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D 566 (1715)
+.|++++.|++|+|||+.++. ....+..|...|.+++|+|+|.+|++|+.|
T Consensus 139 ~iLaSgs~DgtVrIWDl~tg~-----------------------------~~~~l~~h~~~V~sla~spdG~lLatgs~D 189 (493)
T PTZ00421 139 NVLASAGADMVVNVWDVERGK-----------------------------AVEVIKCHSDQITSLEWNLDGSLLCTTSKD 189 (493)
T ss_pred CEEEEEeCCCEEEEEECCCCe-----------------------------EEEEEcCCCCceEEEEEECCCCEEEEecCC
Confidence 689999999999999998643 223345678889999999999999999999
Q ss_pred CeEEEEECCCCceEEEEecCCCC-eEEEEEccCCCcEEEEE---eCCCcEEEEECCCCc-eEEEEEccc-ceEEEEEEcC
Q 048801 567 CRICVWNAVDGSLVHSLTGHSAS-SYVLDVHPFNPRIAMSA---GYDGRTIVWDIWEGT-PIRIYEIGR-FKLVDGKFSP 640 (1715)
Q Consensus 567 GtI~IWDl~sg~~l~tL~gH~~~-V~sLafSP~dg~lLaSg---s~DGtI~VWDl~tgk-~l~tl~~h~-~~V~svafSP 640 (1715)
+.|+|||+++++.+..+.+|.+. +..+.|++.++.++.+| +.|+.|+|||+.+.. ++.....+. ..+....|++
T Consensus 190 g~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~ 269 (493)
T PTZ00421 190 KKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDE 269 (493)
T ss_pred CEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcC
Confidence 99999999999999999999765 34677888555555444 247999999998754 444444333 3455678999
Q ss_pred CCCEEEEEe-CCCeEEEEECCCCccc
Q 048801 641 DGTSIVLSD-DVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 641 DG~~LAsgs-~DG~I~IWdl~tGe~~ 665 (1715)
|+.+|++++ .||.|++|++.+++.+
T Consensus 270 d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 270 DTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred CCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 999999887 5999999999888654
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-21 Score=213.69 Aligned_cols=270 Identities=17% Similarity=0.275 Sum_probs=217.4
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCC
Q 048801 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQ 363 (1715)
Q Consensus 284 Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~ 363 (1715)
....|.+|.|+|.+..|+++++||++++|++........+. |..++.+++|.++. .+++|+.||.|+.+|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~----~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADES----TIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCc----eEEEeccCceEEEEEecCCc
Confidence 36689999999999999999999999999998876655565 99999999999975 68999999999999998765
Q ss_pred CcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee
Q 048801 364 YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV 443 (1715)
Q Consensus 364 ~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~ 443 (1715)
.. ..+.|...|+|+.+++....+++|+.|++|++||.+.... ...
T Consensus 87 ~~--------------------------~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~---------~~~ 131 (323)
T KOG1036|consen 87 ED--------------------------QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV---------VGT 131 (323)
T ss_pred ce--------------------------eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc---------ccc
Confidence 32 2345788899999999888999999999999999985321 111
Q ss_pred ecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccC
Q 048801 444 LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523 (1715)
Q Consensus 444 l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~ 523 (1715)
+. ....|.++.... +.|++|+.|..+.+||+++.....
T Consensus 132 ~d-~~kkVy~~~v~g----------------------------~~LvVg~~~r~v~iyDLRn~~~~~------------- 169 (323)
T KOG1036|consen 132 FD-QGKKVYCMDVSG----------------------------NRLVVGTSDRKVLIYDLRNLDEPF------------- 169 (323)
T ss_pred cc-cCceEEEEeccC----------------------------CEEEEeecCceEEEEEcccccchh-------------
Confidence 11 223677777654 689999999999999999633111
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC----ceEEEEecCCC---------Ce
Q 048801 524 PPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG----SLVHSLTGHSA---------SS 590 (1715)
Q Consensus 524 ~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg----~~l~tL~gH~~---------~V 590 (1715)
..+...-...++||++-|++.=+++++.||.|.+=.+... .....|+.|.. +|
T Consensus 170 --------------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPV 235 (323)
T KOG1036|consen 170 --------------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPV 235 (323)
T ss_pred --------------hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEe
Confidence 1112223457899999999888999999999988766554 34456677743 78
Q ss_pred EEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeC
Q 048801 591 YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDD 650 (1715)
Q Consensus 591 ~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~ 650 (1715)
++|+|||- -..|||||.||.|.+||+.+.+.+..+......|..++|+.||..||+++.
T Consensus 236 Nai~Fhp~-~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 236 NAIAFHPI-HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceeEeccc-cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999994 567899999999999999999999888766678999999999999999865
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-21 Score=223.03 Aligned_cols=275 Identities=19% Similarity=0.258 Sum_probs=225.1
Q ss_pred EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE-----------------EE-eCCCCCeEEEEecCCC
Q 048801 278 LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS-----------------VL-RGHTGAVTAIAFSPRP 339 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~-----------------~L-~gH~~~VtsLafSPdg 339 (1715)
+..+..|.-+|+||+++|++.++++++.+|+|.=|++.+|.... .- .+|...|.+++.++++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 45567799999999999999999999999999999998875331 11 2788899999999999
Q ss_pred CcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC
Q 048801 340 SAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT 419 (1715)
Q Consensus 340 ~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG 419 (1715)
+ +|++|+.|..|.||+..+.+.+.. +..|...|.+++|-.....|.+++.|.
T Consensus 215 k---ylatgg~d~~v~Iw~~~t~ehv~~-------------------------~~ghr~~V~~L~fr~gt~~lys~s~Dr 266 (479)
T KOG0299|consen 215 K---YLATGGRDRHVQIWDCDTLEHVKV-------------------------FKGHRGAVSSLAFRKGTSELYSASADR 266 (479)
T ss_pred c---EEEecCCCceEEEecCcccchhhc-------------------------ccccccceeeeeeecCccceeeeecCC
Confidence 8 999999999999999988764433 345788899999998888899999999
Q ss_pred eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEE
Q 048801 420 FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAI 499 (1715)
Q Consensus 420 ~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIr 499 (1715)
.|++|++.. ...+.++.+|.+.|..|....-. ..+-+|+.|++++
T Consensus 267 svkvw~~~~---------~s~vetlyGHqd~v~~IdaL~re--------------------------R~vtVGgrDrT~r 311 (479)
T KOG0299|consen 267 SVKVWSIDQ---------LSYVETLYGHQDGVLGIDALSRE--------------------------RCVTVGGRDRTVR 311 (479)
T ss_pred ceEEEehhH---------hHHHHHHhCCccceeeechhccc--------------------------ceEEeccccceeE
Confidence 999999975 34477889999999988766532 4455566999999
Q ss_pred EEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce
Q 048801 500 IWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL 579 (1715)
Q Consensus 500 IWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~ 579 (1715)
+|++.. .....+.++.+.+.|++|-.+ ..+++|+.+|.|.+|++...++
T Consensus 312 lwKi~e------------------------------esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 312 LWKIPE------------------------------ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKP 360 (479)
T ss_pred EEeccc------------------------------cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCc
Confidence 998853 122345567788999999754 5778999999999999999988
Q ss_pred EEEEe-cC-----------CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC----ceEEEEEcccceEEEEEEcCCCC
Q 048801 580 VHSLT-GH-----------SASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG----TPIRIYEIGRFKLVDGKFSPDGT 643 (1715)
Q Consensus 580 l~tL~-gH-----------~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg----k~l~tl~~h~~~V~svafSPDG~ 643 (1715)
+.+.. +| ...|++|+..| +..++++|+.+|.|++|-+.+| +++..+. -.+-|..++|+++|+
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGK 438 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCC
Confidence 88764 22 22789999999 8899999999999999999887 4455554 566799999999999
Q ss_pred EEEEE
Q 048801 644 SIVLS 648 (1715)
Q Consensus 644 ~LAsg 648 (1715)
.|++|
T Consensus 439 ~ivag 443 (479)
T KOG0299|consen 439 RIVAG 443 (479)
T ss_pred EEEEe
Confidence 77776
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=211.81 Aligned_cols=259 Identities=24% Similarity=0.371 Sum_probs=206.9
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---cEEEEecCCCCCeEEEEECC--CCCEEEEEeCCCeeEEEE
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA---FCLASCRGHEGDITDLAVSS--NNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg---k~l~tL~gHs~~VtsLafSp--Dg~lLASGS~DGtIrVWD 313 (1715)
-.+|.+.|..+..+-.|+.|||++.|++|+|+.+... +++.+|.||.++|..++|.. -|.+||+++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 3579999999999999999999999999999998653 57889999999999999976 799999999999999999
Q ss_pred CCCCC--ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 314 LPDGL--PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 314 l~tg~--~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
-.+|+ .......|...|++++|.|.+-.. .|++++.||.|.|.+++... ......
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl-~LacasSDG~vsvl~~~~~g----------------------~w~t~k 143 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGL-LLACASSDGKVSVLTYDSSG----------------------GWTTSK 143 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccce-EEEEeeCCCcEEEEEEcCCC----------------------Cccchh
Confidence 88774 344567899999999999987543 89999999999999887541 111222
Q ss_pred CCCCCCcceeEEEEccC---C-----------CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEc
Q 048801 392 SNGLQSHQILCCAYNAN---G-----------TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS 457 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpd---G-----------~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafs 457 (1715)
....|.-.|++++|.|. | +.||+|+.|..|+||+...+. ...-..|.+|.+.|+.++|.
T Consensus 144 i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-------w~~e~~l~~H~dwVRDVAwa 216 (299)
T KOG1332|consen 144 IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-------WKLERTLEGHKDWVRDVAWA 216 (299)
T ss_pred hhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc-------hhhhhhhhhcchhhhhhhhc
Confidence 34456777899999885 4 569999999999999998652 23345589999999999999
Q ss_pred cCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC
Q 048801 458 GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537 (1715)
Q Consensus 458 pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 537 (1715)
|... +....|++|+.||++.||..+. . ...|...
T Consensus 217 P~~g----------------------l~~s~iAS~SqDg~viIwt~~~-e----~e~wk~t------------------- 250 (299)
T KOG1332|consen 217 PSVG----------------------LPKSTIASCSQDGTVIIWTKDE-E----YEPWKKT------------------- 250 (299)
T ss_pred cccC----------------------CCceeeEEecCCCcEEEEEecC-c----cCccccc-------------------
Confidence 9641 1136899999999999997652 1 1122111
Q ss_pred cccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECC
Q 048801 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV 575 (1715)
Q Consensus 538 ~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~ 575 (1715)
.+...+..+..+.||+.|++|++++.|+.|.+|.-.
T Consensus 251 --ll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 251 --LLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred --ccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 122245678999999999999999999999999753
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=225.21 Aligned_cols=298 Identities=19% Similarity=0.306 Sum_probs=234.5
Q ss_pred EEeCC-CcEEEEeCCCCcEEEEecCC-CCCeEEEEECCCCCEEEEEeC-CCeeEEEECCCCCceEEEeCCCCCeEEEEec
Q 048801 260 TGSDD-RLVKIWSMETAFCLASCRGH-EGDITDLAVSSNNTLVASASN-DFVIRVWRLPDGLPISVLRGHTGAVTAIAFS 336 (1715)
Q Consensus 260 TGS~D-GtIrIWDl~tgk~l~tL~gH-s~~VtsLafSpDg~lLASGS~-DGtIrVWDl~tg~~l~~L~gH~~~VtsLafS 336 (1715)
+++.| ..+.+||+.||..+.++++. ...-.++..- .+.+++++.. ...|.+|.+..........--.++|.+++-+
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 34444 55999999999999999875 2222222221 3456666654 4579999987655444333356789999999
Q ss_pred CCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec
Q 048801 337 PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS 416 (1715)
Q Consensus 337 Pdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs 416 (1715)
|.|. +|+.|+..|.|++|.+.+|.++..+ ..|-..|+|+.|+-||.+|++|+
T Consensus 91 n~G~---~l~ag~i~g~lYlWelssG~LL~v~-------------------------~aHYQ~ITcL~fs~dgs~iiTgs 142 (476)
T KOG0646|consen 91 NLGY---FLLAGTISGNLYLWELSSGILLNVL-------------------------SAHYQSITCLKFSDDGSHIITGS 142 (476)
T ss_pred CCce---EEEeecccCcEEEEEeccccHHHHH-------------------------HhhccceeEEEEeCCCcEEEecC
Confidence 9986 6777779999999999999876543 34677799999999999999999
Q ss_pred CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC
Q 048801 417 SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG 496 (1715)
Q Consensus 417 ~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG 496 (1715)
.||.|.+|.+...-.........++..+..|+-+|+.+...+.+. ..+|+|++.|.
T Consensus 143 kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~------------------------~~rl~TaS~D~ 198 (476)
T KOG0646|consen 143 KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGT------------------------NARLYTASEDR 198 (476)
T ss_pred CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCc------------------------cceEEEecCCc
Confidence 999999999865432222334567889999999999999887541 36999999999
Q ss_pred eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC
Q 048801 497 SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD 576 (1715)
Q Consensus 497 sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s 576 (1715)
++++||+..+..+.. ...+..+.+++++|-++.+++|+.+|.|.+.++..
T Consensus 199 t~k~wdlS~g~LLlt------------------------------i~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~ 248 (476)
T KOG0646|consen 199 TIKLWDLSLGVLLLT------------------------------ITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFK 248 (476)
T ss_pred eEEEEEeccceeeEE------------------------------EecCCcceeEEEcccccEEEecCCcceEEeeehhc
Confidence 999999987543222 22356789999999999999999999999988743
Q ss_pred ----------------CceEEEEecCCC--CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEE
Q 048801 577 ----------------GSLVHSLTGHSA--SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKF 638 (1715)
Q Consensus 577 ----------------g~~l~tL~gH~~--~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svaf 638 (1715)
+..+..+.||.+ .|+|++++- |+.+|++|+.||.|+|||+.+.++++++....++|+.+.+
T Consensus 249 ~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 249 LSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred CCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEe
Confidence 335667889988 999999998 8899999999999999999999999999877888998888
Q ss_pred cCC
Q 048801 639 SPD 641 (1715)
Q Consensus 639 SPD 641 (1715)
.|-
T Consensus 328 ~~~ 330 (476)
T KOG0646|consen 328 NPL 330 (476)
T ss_pred ecc
Confidence 664
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=233.84 Aligned_cols=282 Identities=18% Similarity=0.278 Sum_probs=229.7
Q ss_pred CCCCEEEEEeCCCeeEEEECCCCC------ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCccee
Q 048801 295 SNNTLVASASNDFVIRVWRLPDGL------PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRI 368 (1715)
Q Consensus 295 pDg~lLASGS~DGtIrVWDl~tg~------~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i 368 (1715)
|.+++|+||+.||.|++|++.... .+..+..|...|+.++.+.+++ .|++++.|-+|++|+...+..
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~---tlIS~SsDtTVK~W~~~~~~~---- 107 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK---TLISASSDTTVKVWNAHKDNT---- 107 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC---ceEEecCCceEEEeecccCcc----
Confidence 467789999999999999986432 3677889999999999999987 799999999999999875520
Q ss_pred cCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEE-ccCCCeEEEecCCCeEEEEeCCCCCc--cCCCCCceeeeeec
Q 048801 369 YLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAY-NANGTVFVTGSSDTFARVWSACKSSV--EDSEQPIHELDVLS 445 (1715)
Q Consensus 369 ~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtslaf-SpdG~~LatGs~DG~IrVWDl~t~~~--~~~~~~~~~l~~l~ 445 (1715)
........|...|.|+++ -++..++|+|+-|+.|.|||+.++.. ....... ....+.
T Consensus 108 -------------------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~-t~~sl~ 167 (735)
T KOG0308|consen 108 -------------------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV-TVNSLG 167 (735)
T ss_pred -------------------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc-ccccCC
Confidence 112234567889999999 77888999999999999999997621 1111111 122333
Q ss_pred -CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCC
Q 048801 446 -GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVP 524 (1715)
Q Consensus 446 -gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~ 524 (1715)
|+...|.+++.++.+ ..|++|+..+.|++||.++++
T Consensus 168 sG~k~siYSLA~N~t~--------------------------t~ivsGgtek~lr~wDprt~~----------------- 204 (735)
T KOG0308|consen 168 SGPKDSIYSLAMNQTG--------------------------TIIVSGGTEKDLRLWDPRTCK----------------- 204 (735)
T ss_pred CCCccceeeeecCCcc--------------------------eEEEecCcccceEEecccccc-----------------
Confidence 888999999999876 689999999999999999744
Q ss_pred CCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEE
Q 048801 525 PPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAM 604 (1715)
Q Consensus 525 ~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLa 604 (1715)
.+..+.+|...|.++..+.||+.+++++.||+|++||+...+++.++..|...|+++..+| +=..++
T Consensus 205 ------------kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vY 271 (735)
T KOG0308|consen 205 ------------KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVY 271 (735)
T ss_pred ------------ceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEE
Confidence 3455679999999999999999999999999999999999999999999999999999998 778899
Q ss_pred EEeCCCcEEEEECCCC-ceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 605 SAGYDGRTIVWDIWEG-TPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 605 Sgs~DGtI~VWDl~tg-k~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
+|+.||.|..=|+.+. ++...+. ...+|..+..+.+...+-+++.|+.|.-|...
T Consensus 272 sG~rd~~i~~Tdl~n~~~~tlick-~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPAKSTLICK-EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred ecCCCCcEEecccCCchhheEeec-CCCchhhhhhccccCCceeeeccccceecCCc
Confidence 9999999999999885 3444443 55677777777655556777788888888753
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-19 Score=216.08 Aligned_cols=405 Identities=15% Similarity=0.170 Sum_probs=267.6
Q ss_pred CceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 048801 193 DQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHR-DAVYCAIFDRSGRFVITGSDDRLVKIWS 271 (1715)
Q Consensus 193 d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~-~~Vt~VafSpDG~~LaTGS~DGtIrIWD 271 (1715)
..+.++++......++.....+.+- .|......-+...|.||. ..|-+++|+ +|..|++.+.+|.|.-||
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IE--------iwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwD 96 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIE--------IWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWD 96 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEE--------EEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEe
Confidence 3466666665554433332222221 122222334556677775 579999999 555788888999999999
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE--EEeCCCCCeEEEEecCCCCcceEEEEec
Q 048801 272 METAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS--VLRGHTGAVTAIAFSPRPSAIYQLLSSS 349 (1715)
Q Consensus 272 l~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~--~L~gH~~~VtsLafSPdg~~~~~LaSgS 349 (1715)
+.+++.+..+....+.|++++.+|.+..++.||.||.+...+...+.... .|....+.|.++.|.|++. .|++|+
T Consensus 97 l~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~---~i~~Gs 173 (691)
T KOG2048|consen 97 LHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT---KIAGGS 173 (691)
T ss_pred cccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc---EEEecc
Confidence 99999999999999999999999999999999999988888887765443 3445568999999999986 799999
Q ss_pred CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCC
Q 048801 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~ 429 (1715)
.||.|++||+..+..+..+..... ........-|+++.|..++ .||+|.+.|+|.+||...+
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d-----------------~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g 235 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLD-----------------RLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG 235 (691)
T ss_pred cCceEEEEEcCCCceEEEeeeccc-----------------ccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc
Confidence 999999999998876552211100 0011123448888888665 6899999999999999875
Q ss_pred CccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccC
Q 048801 430 SVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 509 (1715)
Q Consensus 430 ~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~ 509 (1715)
. .+..+..|...|.+++..++. +++++++.|+.|..+...+...
T Consensus 236 T---------LiqS~~~h~adVl~Lav~~~~--------------------------d~vfsaGvd~~ii~~~~~~~~~- 279 (691)
T KOG2048|consen 236 T---------LIQSHSCHDADVLALAVADNE--------------------------DRVFSAGVDPKIIQYSLTTNKS- 279 (691)
T ss_pred c---------hhhhhhhhhcceeEEEEcCCC--------------------------CeEEEccCCCceEEEEecCCcc-
Confidence 4 466778899999999999875 8999999999999987765432
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEE-----------------
Q 048801 510 GKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVW----------------- 572 (1715)
Q Consensus 510 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IW----------------- 572 (1715)
.|.... ....|...|.+++..++ .|++|+.|.++.+-
T Consensus 280 ----~wv~~~--------------------~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p 333 (691)
T KOG2048|consen 280 ----EWVINS--------------------RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFP 333 (691)
T ss_pred ----ceeeec--------------------cccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhcccccc
Confidence 132211 12334445555555444 44445544444433
Q ss_pred -------------------------ECCCC---------ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 573 -------------------------NAVDG---------SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 573 -------------------------Dl~sg---------~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
.+.+. .+++........|.+.+.|| ++.+++.+. -..++||.+.
T Consensus 334 ~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st-~~~~~iy~L~ 411 (691)
T KOG2048|consen 334 ASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLIAIST-VSRTKIYRLQ 411 (691)
T ss_pred ccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEEEEee-ccceEEEEec
Confidence 22221 01111122334578888899 555555544 1123333221
Q ss_pred C--------------------------------------------------CceEEEEE--cccceEEEEEEcCCCCEEE
Q 048801 619 E--------------------------------------------------GTPIRIYE--IGRFKLVDGKFSPDGTSIV 646 (1715)
Q Consensus 619 t--------------------------------------------------gk~l~tl~--~h~~~V~svafSPDG~~LA 646 (1715)
. ++.+..+. .....|..++.||||++||
T Consensus 412 ~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yia 491 (691)
T KOG2048|consen 412 PDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIA 491 (691)
T ss_pred cCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEE
Confidence 1 01111110 1223578899999999999
Q ss_pred EEeCCCeEEEEECCCCcccccc------ccceeec-CCCccEEEc-CCCCeee
Q 048801 647 LSDDVGQIYLLNTGQGESQKDA------KYDQFFL-GDYRPLIRD-SLGNVLD 691 (1715)
Q Consensus 647 sgs~DG~I~IWdl~tGe~~k~~------~~~~~fs-~D~r~L~~d-~~g~vld 691 (1715)
+.+..|.|++|++.+++..... .....|+ .+...|+.. +++.+..
T Consensus 492 a~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~e 544 (691)
T KOG2048|consen 492 AISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFE 544 (691)
T ss_pred EEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEE
Confidence 9999999999999988754322 2334566 445556654 4444433
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=216.37 Aligned_cols=281 Identities=16% Similarity=0.179 Sum_probs=236.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCc
Q 048801 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365 (1715)
Q Consensus 286 ~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l 365 (1715)
..|+++...+....+++|+.|.++.++|...++.+.++.||...|+.+.|+|+.. .+++++.|..|+||.......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~---~v~~aSad~~i~vws~~~~s~- 295 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLD---TVITASADEIIRVWSVPLSSE- 295 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchh---heeecCCcceEEeeccccccC-
Confidence 4788888888878999999999999999999999999999999999999999987 789999999999998754331
Q ss_pred ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec
Q 048801 366 PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS 445 (1715)
Q Consensus 366 ~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~ 445 (1715)
......|...|+.+..+|.|.||++++.||+..+.|++++.. +....
T Consensus 296 ------------------------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~---------lt~vs 342 (506)
T KOG0289|consen 296 ------------------------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ---------LTVVS 342 (506)
T ss_pred ------------------------ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE---------EEEEe
Confidence 223355788899999999999999999999999999988642 22222
Q ss_pred --CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccC
Q 048801 446 --GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523 (1715)
Q Consensus 446 --gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~ 523 (1715)
...-.+++.+|+|+| -.|.+|..||.|+|||+.++.
T Consensus 343 ~~~s~v~~ts~~fHpDg--------------------------Lifgtgt~d~~vkiwdlks~~---------------- 380 (506)
T KOG0289|consen 343 DETSDVEYTSAAFHPDG--------------------------LIFGTGTPDGVVKIWDLKSQT---------------- 380 (506)
T ss_pred eccccceeEEeeEcCCc--------------------------eEEeccCCCceEEEEEcCCcc----------------
Confidence 223358999999998 589999999999999998633
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecC-CCCeEEEEEccCCCcE
Q 048801 524 PPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH-SASSYVLDVHPFNPRI 602 (1715)
Q Consensus 524 ~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH-~~~V~sLafSP~dg~l 602 (1715)
....+.+|.++|..|+|+.+|-||++++.|+.|++||++..+...++.-. ..+|.++.|.+ .+.+
T Consensus 381 -------------~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~ 446 (506)
T KOG0289|consen 381 -------------NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTY 446 (506)
T ss_pred -------------ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCe
Confidence 34557789999999999999999999999999999999998888877643 34789999998 7788
Q ss_pred EEEEeCCCcEEEEECC--CCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 603 AMSAGYDGRTIVWDIW--EGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 603 LaSgs~DGtI~VWDl~--tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
|+.+|.|=.|++++-. ...++..+..|.+..+.+.|....++|++++.|..++++.+
T Consensus 447 L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 447 LGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 8888777666666532 56788888888888999999999999999999998888764
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=220.51 Aligned_cols=265 Identities=23% Similarity=0.343 Sum_probs=210.9
Q ss_pred EcCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC----------cEEEEecCCCCCeEEEEECCC-CCEEEEEeCC
Q 048801 239 LRGHRDAVYCAIFDRSG-RFVITGSDDRLVKIWSMETA----------FCLASCRGHEGDITDLAVSSN-NTLVASASND 306 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG-~~LaTGS~DGtIrIWDl~tg----------k~l~tL~gHs~~VtsLafSpD-g~lLASGS~D 306 (1715)
.--|.+.|+.+.+-|.. .+|||++..+.|.|||..+- .+-.+|.||...-++|+|++. .-.|++|+.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 34699999999999965 46777788999999997532 222378999998889999985 4588999999
Q ss_pred CeeEEEECCCC-------CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccC
Q 048801 307 FVIRVWRLPDG-------LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITG 379 (1715)
Q Consensus 307 GtIrVWDl~tg-------~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g 379 (1715)
++|++||+... .+...+.+|...|..++|++.... +|++++.|+.+.|||++++..
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~--lF~sv~dd~~L~iwD~R~~~~--------------- 262 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED--LFGSVGDDGKLMIWDTRSNTS--------------- 262 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchh--hheeecCCCeEEEEEcCCCCC---------------
Confidence 99999999753 345678899999999999998765 799999999999999986321
Q ss_pred ccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEcc
Q 048801 380 KSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSG 458 (1715)
Q Consensus 380 ~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafsp 458 (1715)
.+......|...|.|++|+| ++.+||+|+.|++|++||+++.. .++..+.+|...|.+|.|+|
T Consensus 263 --------~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--------~~lh~~e~H~dev~~V~WSP 326 (422)
T KOG0264|consen 263 --------KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN--------KPLHTFEGHEDEVFQVEWSP 326 (422)
T ss_pred --------CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc--------cCceeccCCCcceEEEEeCC
Confidence 11223345788999999999 56789999999999999998753 46889999999999999999
Q ss_pred CcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCc
Q 048801 459 CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPR 538 (1715)
Q Consensus 459 dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 538 (1715)
.. ...|++++.|+.+.|||+..-. . .
T Consensus 327 h~-------------------------etvLASSg~D~rl~vWDls~ig---~-------------------------e- 352 (422)
T KOG0264|consen 327 HN-------------------------ETVLASSGTDRRLNVWDLSRIG---E-------------------------E- 352 (422)
T ss_pred CC-------------------------CceeEecccCCcEEEEeccccc---c-------------------------c-
Confidence 76 4799999999999999987310 0 0
Q ss_pred ccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 539 QRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 539 ~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
. +++ -..|| -.+++..-.||...|..+.|+|..+..|+|++.|+.+.||...
T Consensus 353 ----------q----~~e------da~dg--------ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 353 ----------Q----SPE------DAEDG--------PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ----------c----Chh------hhccC--------CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 0 000 00111 2345566678999999999999999999999999999999974
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=219.47 Aligned_cols=266 Identities=18% Similarity=0.319 Sum_probs=210.4
Q ss_pred CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEE
Q 048801 325 GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCA 404 (1715)
Q Consensus 325 gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsla 404 (1715)
.|.+.|+.+.+.|.... .+++.+..+.|.|||...-.-..... ....+.....+|...-.+++
T Consensus 122 ~h~gEVnRaRymPQnp~--iVAt~t~~~dv~Vfd~tk~~s~~~~~---------------~~~~Pdl~L~gH~~eg~gls 184 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPN--IVATKTSSGDVYVFDYTKHPSKPKAS---------------GECRPDLRLKGHEKEGYGLS 184 (422)
T ss_pred cCCccchhhhhCCCCCc--EEEecCCCCCEEEEEeccCCCccccc---------------ccCCCceEEEeecccccccc
Confidence 49999999999999875 68888999999999986433211110 01122333445566667899
Q ss_pred EccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCc
Q 048801 405 YNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW 483 (1715)
Q Consensus 405 fSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~ 483 (1715)
|++.. -.|++|+.|+.|++||+...... .........+.+|...|..++|++..
T Consensus 185 Wn~~~~g~Lls~~~d~~i~lwdi~~~~~~--~~~~~p~~~~~~h~~~VeDV~~h~~h----------------------- 239 (422)
T KOG0264|consen 185 WNRQQEGTLLSGSDDHTICLWDINAESKE--DKVVDPKTIFSGHEDVVEDVAWHPLH----------------------- 239 (422)
T ss_pred cccccceeEeeccCCCcEEEEeccccccC--CccccceEEeecCCcceehhhccccc-----------------------
Confidence 99854 47889999999999999764321 22244567889999999999999854
Q ss_pred ccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEE
Q 048801 484 FCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLA 562 (1715)
Q Consensus 484 ~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaT 562 (1715)
.+.|++++.|+.+.|||+++.. ..+.....+|.+.|+|++|+| ++..|||
T Consensus 240 --~~lF~sv~dd~~L~iwD~R~~~---------------------------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT 290 (422)
T KOG0264|consen 240 --EDLFGSVGDDGKLMIWDTRSNT---------------------------SKPSHSVKAHSAEVNCVAFNPFNEFILAT 290 (422)
T ss_pred --hhhheeecCCCeEEEEEcCCCC---------------------------CCCcccccccCCceeEEEeCCCCCceEEe
Confidence 4789999999999999999521 223445678999999999999 5567788
Q ss_pred EecCCeEEEEECCCC-ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC--------------ceEEEEE
Q 048801 563 AIMDCRICVWNAVDG-SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG--------------TPIRIYE 627 (1715)
Q Consensus 563 gs~DGtI~IWDl~sg-~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg--------------k~l~tl~ 627 (1715)
|+.|++|.+||+++. ++++++.+|...|..|.|+|....+||++|.|+++.|||+..- +++..-.
T Consensus 291 ~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~Hg 370 (422)
T KOG0264|consen 291 GSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHG 370 (422)
T ss_pred ccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEec
Confidence 999999999999885 5788999999999999999988899999999999999998631 2345556
Q ss_pred cccceEEEEEEcCCCCEEE-EEeCCCeEEEEECCC
Q 048801 628 IGRFKLVDGKFSPDGTSIV-LSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 628 ~h~~~V~svafSPDG~~LA-sgs~DG~I~IWdl~t 661 (1715)
+|...|.++.|+|...+++ ++.+|+.+.||.+..
T Consensus 371 GH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 371 GHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 7888999999999887655 779999999999863
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-20 Score=231.87 Aligned_cols=219 Identities=11% Similarity=0.191 Sum_probs=163.7
Q ss_pred cceeEEEEcCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCc--------EEEEecCCCCCeEEEEECCCCCE-EE
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRS-GRFVITGSDDRLVKIWSMETAF--------CLASCRGHEGDITDLAVSSNNTL-VA 301 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpD-G~~LaTGS~DGtIrIWDl~tgk--------~l~tL~gHs~~VtsLafSpDg~l-LA 301 (1715)
....+..|.||.+.|.+++|+|+ +.+||||+.||+|+|||+.++. .+..+.+|...|.+++|+|++.. |+
T Consensus 63 r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLa 142 (568)
T PTZ00420 63 RKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMC 142 (568)
T ss_pred CCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEE
Confidence 34577889999999999999996 7899999999999999997642 34568899999999999999875 57
Q ss_pred EEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCcc
Q 048801 302 SASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKS 381 (1715)
Q Consensus 302 SGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~ 381 (1715)
+|+.|++|+|||+.++..+..+. |...|.+++|+|++. +|++++.|+.|+|||++++..+..+.... ..
T Consensus 143 SgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~---lLat~s~D~~IrIwD~Rsg~~i~tl~gH~--g~----- 211 (568)
T PTZ00420 143 SSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN---LLSGTCVGKHMHIIDPRKQEIASSFHIHD--GG----- 211 (568)
T ss_pred EEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC---EEEEEecCCEEEEEECCCCcEEEEEeccc--CC-----
Confidence 89999999999999998877776 668899999999998 88999999999999999887654432100 00
Q ss_pred CCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC----eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEc
Q 048801 382 NVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT----FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS 457 (1715)
Q Consensus 382 ~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG----~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafs 457 (1715)
.....+....|++++.+|++++.++ .|+|||++... .+.. ...+..+.+.+......
T Consensus 212 -------------~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~-----~pl~-~~~ld~~~~~L~p~~D~ 272 (568)
T PTZ00420 212 -------------KNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT-----SALV-TMSIDNASAPLIPHYDE 272 (568)
T ss_pred -------------ceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-----CceE-EEEecCCccceEEeeeC
Confidence 0011234456778999999877664 79999998521 1111 11222223333222222
Q ss_pred cCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCC
Q 048801 458 GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 506 (1715)
Q Consensus 458 pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~ 506 (1715)
++ +.++++|+.|+.|++|++..+
T Consensus 273 ~t--------------------------g~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 273 ST--------------------------GLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CC--------------------------CCEEEEEECCCeEEEEEccCC
Confidence 22 368899999999999999753
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-19 Score=210.24 Aligned_cols=276 Identities=11% Similarity=0.056 Sum_probs=200.6
Q ss_pred CCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCC
Q 048801 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDA 376 (1715)
Q Consensus 297 g~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~ 376 (1715)
+.++++++.|+.|++||+.+++.+..+..+. .+.+++|+|++.. .+++++.++.|++||+.+++....+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~--l~~~~~~~~~v~~~d~~~~~~~~~~~~------ 71 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKL--LYVCASDSDTIQVIDLATGEVIGTLPS------ 71 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCE--EEEEECCCCeEEEEECCCCcEEEeccC------
Confidence 3578899999999999999999988888654 4678999999872 346778899999999987764432211
Q ss_pred ccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEe-cCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEE
Q 048801 377 ITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG-SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455 (1715)
Q Consensus 377 i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatG-s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLa 455 (1715)
...+..++|+|+++.++++ +.++.|++||+.+.+ .+..+.. ...+.+++
T Consensus 72 --------------------~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~---------~~~~~~~-~~~~~~~~ 121 (300)
T TIGR03866 72 --------------------GPDPELFALHPNGKILYIANEDDNLVTVIDIETRK---------VLAEIPV-GVEPEGMA 121 (300)
T ss_pred --------------------CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCe---------EEeEeeC-CCCcceEE
Confidence 1124578899999877554 568999999997642 2333322 23467899
Q ss_pred EccCcccccccccccccccccccccCCcccCceEEEEcCCC-eEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG-SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 456 fspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG-sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
|+|++ ..+++++.++ .+.+||..++.....
T Consensus 122 ~~~dg--------------------------~~l~~~~~~~~~~~~~d~~~~~~~~~----------------------- 152 (300)
T TIGR03866 122 VSPDG--------------------------KIVVNTSETTNMAHFIDTKTYEIVDN----------------------- 152 (300)
T ss_pred ECCCC--------------------------CEEEEEecCCCeEEEEeCCCCeEEEE-----------------------
Confidence 99986 6777777665 466778765331110
Q ss_pred CCCcccccCCCCCeeEEEeCCCCCEEEEE-ecCCeEEEEECCCCceEEEEecCCC-------CeEEEEEccCCCcEEEEE
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAA-IMDCRICVWNAVDGSLVHSLTGHSA-------SSYVLDVHPFNPRIAMSA 606 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPDG~~LaTg-s~DGtI~IWDl~sg~~l~tL~gH~~-------~V~sLafSP~dg~lLaSg 606 (1715)
. .....+.+++|+++|++|+++ ..++.|++||+.+++.+..+..+.. ....++|+|++..++++.
T Consensus 153 ------~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~ 225 (300)
T TIGR03866 153 ------V-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL 225 (300)
T ss_pred ------E-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence 0 011234678999999988655 4689999999999988777653321 234688999555545555
Q ss_pred eCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCcccccc
Q 048801 607 GYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLS-DDVGQIYLLNTGQGESQKDA 668 (1715)
Q Consensus 607 s~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsg-s~DG~I~IWdl~tGe~~k~~ 668 (1715)
+.++.|.+||+.+++.+..+. +...+.+++|+|+|++|+++ ..+|.|.|||+.+++.+...
T Consensus 226 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 226 GPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred CCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 667789999999998887665 34478899999999999886 56899999999998866543
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-20 Score=206.01 Aligned_cols=282 Identities=16% Similarity=0.185 Sum_probs=213.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE
Q 048801 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS 321 (1715)
Q Consensus 242 H~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~ 321 (1715)
-.+.|+.|.|+|.+..|+.+++||++++|++....+...++ |..++.+++|.+ ...+++|+.||.|+++|+.++....
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCccee
Confidence 36789999999999999999999999999999876666665 999999999986 5578999999999999998887554
Q ss_pred EEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCccee
Q 048801 322 VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQIL 401 (1715)
Q Consensus 322 ~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vt 401 (1715)
+..|..+|.||.+++..+ .+++||+|++|++||.+.......+ .....|.
T Consensus 90 -igth~~~i~ci~~~~~~~---~vIsgsWD~~ik~wD~R~~~~~~~~--------------------------d~~kkVy 139 (323)
T KOG1036|consen 90 -IGTHDEGIRCIEYSYEVG---CVISGSWDKTIKFWDPRNKVVVGTF--------------------------DQGKKVY 139 (323)
T ss_pred -eccCCCceEEEEeeccCC---eEEEcccCccEEEEecccccccccc--------------------------ccCceEE
Confidence 445999999999998766 8999999999999998853222111 1123577
Q ss_pred EEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccC
Q 048801 402 CCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 402 slafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
|+.. .|+.|++|+.+..+.+||+++..... ...-..-.-.+.||++.|++
T Consensus 140 ~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~-------q~reS~lkyqtR~v~~~pn~--------------------- 189 (323)
T KOG1036|consen 140 CMDV--SGNRLVVGTSDRKVLIYDLRNLDEPF-------QRRESSLKYQTRCVALVPNG--------------------- 189 (323)
T ss_pred EEec--cCCEEEEeecCceEEEEEcccccchh-------hhccccceeEEEEEEEecCC---------------------
Confidence 7766 56789999999999999998754211 11112233468899998865
Q ss_pred CcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La 561 (1715)
.-+++++.||.|.+=.++.... ...+.|.++..... ..-...-.+|++|+|+|-...||
T Consensus 190 -----eGy~~sSieGRVavE~~d~s~~-----~~skkyaFkCHr~~-----------~~~~~~~yPVNai~Fhp~~~tfa 248 (323)
T KOG1036|consen 190 -----EGYVVSSIEGRVAVEYFDDSEE-----AQSKKYAFKCHRLS-----------EKDTEIIYPVNAIAFHPIHGTFA 248 (323)
T ss_pred -----CceEEEeecceEEEEccCCchH-----HhhhceeEEeeecc-----------cCCceEEEEeceeEeccccceEE
Confidence 5788999999998866654311 01122222211100 00011124699999999999999
Q ss_pred EEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEe
Q 048801 562 AAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607 (1715)
Q Consensus 562 Tgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs 607 (1715)
||+.||.|.+||+.+.+.+..|......|.+++|+. ++..||+|+
T Consensus 249 TgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~ 293 (323)
T KOG1036|consen 249 TGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIAS 293 (323)
T ss_pred ecCCCceEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEe
Confidence 999999999999999999999988888899999998 667777765
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-21 Score=222.67 Aligned_cols=245 Identities=20% Similarity=0.311 Sum_probs=202.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC------
Q 048801 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP------ 315 (1715)
Q Consensus 242 H~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~------ 315 (1715)
-.+.|.|++-+|+|.+|+.|+-.|.|++|.+.+|.++..+.+|-..|+|+.|+-||.+|+||+.||.|.+|.+.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 35789999999999999999899999999999999999999999999999999999999999999999999863
Q ss_pred ---CCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCC
Q 048801 316 ---DGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392 (1715)
Q Consensus 316 ---tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~ 392 (1715)
+-+++..+..|+-+|+.+...+.+... +|+++|.|.++++||+..+.++..+.+|
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~-rl~TaS~D~t~k~wdlS~g~LLlti~fp--------------------- 217 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNA-RLYTASEDRTIKLWDLSLGVLLLTITFP--------------------- 217 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccc-eEEEecCCceEEEEEeccceeeEEEecC---------------------
Confidence 346788999999999999998875443 8999999999999999999888777653
Q ss_pred CCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccc
Q 048801 393 NGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFK 472 (1715)
Q Consensus 393 ~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~ 472 (1715)
..+.+++.+|-+..+.+|+.+|.|.+.++.... +....|..=.++..
T Consensus 218 -----~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~---------------~~~~~v~~k~~~~~------------- 264 (476)
T KOG0646|consen 218 -----SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLS---------------GQSAGVNQKGRHEE------------- 264 (476)
T ss_pred -----CcceeEEEcccccEEEecCCcceEEeeehhcCC---------------cccccccccccccc-------------
Confidence 348999999999999999999999998875421 11111110111111
Q ss_pred ccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC--CeeE
Q 048801 473 EENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR--GVNM 550 (1715)
Q Consensus 473 ~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~--~Vts 550 (1715)
+..+..+.+|.+ .|+|
T Consensus 265 --------------------------------------------------------------~t~~~~~~Gh~~~~~ITc 282 (476)
T KOG0646|consen 265 --------------------------------------------------------------NTQINVLVGHENESAITC 282 (476)
T ss_pred --------------------------------------------------------------cceeeeeccccCCcceeE
Confidence 111223445555 8999
Q ss_pred EEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEE
Q 048801 551 IVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIA 603 (1715)
Q Consensus 551 lafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lL 603 (1715)
++++-||.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|.-...+
T Consensus 283 Lais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~ 335 (476)
T KOG0646|consen 283 LAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGII 335 (476)
T ss_pred EEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccccee
Confidence 99999999999999999999999999999999987889999999977544444
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.6e-21 Score=221.45 Aligned_cols=290 Identities=21% Similarity=0.270 Sum_probs=228.9
Q ss_pred CCCCceeeeeeccccCcccccCCCCcccccccccccCccccccc--eeEEEEc--CCCCCeEEEEEcCCCCEEEEEeCCC
Q 048801 190 MQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKM--QNIKKLR--GHRDAVYCAIFDRSGRFVITGSDDR 265 (1715)
Q Consensus 190 ~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--k~l~~L~--GH~~~Vt~VafSpDG~~LaTGS~DG 265 (1715)
.++-+++.|+..++.+.++..+....+.++.....+.|..-... .++..|. .-..-|.++.+.|||+.|++|+.-.
T Consensus 408 rharq~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeas 487 (705)
T KOG0639|consen 408 RHARQINTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAS 487 (705)
T ss_pred chHHhhhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccc
Confidence 45667777777776666666666666665554444444332211 1233332 2356789999999999999999999
Q ss_pred cEEEEeCCCCc--EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcce
Q 048801 266 LVKIWSMETAF--CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIY 343 (1715)
Q Consensus 266 tIrIWDl~tgk--~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~ 343 (1715)
+|.|||+..-. ....+....-..++++.+||.++.++++.||.|.|||+.+...++.|.||...+.||.++++|.
T Consensus 488 tlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGt--- 564 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGT--- 564 (705)
T ss_pred eeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCc---
Confidence 99999997543 3344555556778899999999999999999999999999999999999999999999999997
Q ss_pred EEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEE
Q 048801 344 QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARV 423 (1715)
Q Consensus 344 ~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrV 423 (1715)
.|.+|+-|.+|+.||++.+..+....+ ..+|.++.++|++.+|++|-.++.+.|
T Consensus 565 klWTGGlDntvRcWDlregrqlqqhdF--------------------------~SQIfSLg~cP~~dWlavGMens~vev 618 (705)
T KOG0639|consen 565 KLWTGGLDNTVRCWDLREGRQLQQHDF--------------------------SSQIFSLGYCPTGDWLAVGMENSNVEV 618 (705)
T ss_pred eeecCCCccceeehhhhhhhhhhhhhh--------------------------hhhheecccCCCccceeeecccCcEEE
Confidence 899999999999999998876554322 556999999999999999999999988
Q ss_pred EeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEec
Q 048801 424 WSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIP 503 (1715)
Q Consensus 424 WDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl 503 (1715)
...... ....+..|...|.++.|.++| +.+++.+.|..+..|..
T Consensus 619 lh~skp----------~kyqlhlheScVLSlKFa~cG--------------------------kwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 619 LHTSKP----------EKYQLHLHESCVLSLKFAYCG--------------------------KWFVSTGKDNLLNAWRT 662 (705)
T ss_pred EecCCc----------cceeecccccEEEEEEecccC--------------------------ceeeecCchhhhhhccC
Confidence 887643 345677899999999999987 89999999999999976
Q ss_pred CCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEEC
Q 048801 504 RSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 574 (1715)
Q Consensus 504 ~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl 574 (1715)
.-+..+.. ......|.++.+|.|+++|+||+.|....||.+
T Consensus 663 PyGasiFq------------------------------skE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 663 PYGASIFQ------------------------------SKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccccceee------------------------------ccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 54332111 123457999999999999999999988888864
|
|
| >PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-22 Score=186.44 Aligned_cols=78 Identities=19% Similarity=0.444 Sum_probs=71.8
Q ss_pred cccCceEEEecCCCCCCCceEEehhhHHHHHhCCCCCCcceEEeecccCCCCCceEEEEEEEcccCCC-CCCCCCCceeE
Q 048801 1502 SVLGKAFKLTLPELRDFPDFVVEKTLYDAAISRNWTHRDKCQIWWRNANGEGGTWWKGRITKSQAKSE-EFPNSPWDRYM 1580 (1715)
Q Consensus 1502 ~~~~~~F~v~y~~~~~~~dFlV~~~~y~~a~~~~w~~g~rf~~~~~~e~~~~~~w~~GtI~~~~~~~p-~~P~S~w~~l~ 1580 (1715)
.+++.+|.|+|+||++.+||||++++|++|++.+|++||||||.|+.|+ +.+++|+|||+++++.|| .||+|+||||+
T Consensus 5 a~~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~~~~~~GmRfkM~fE~ed-s~~~~~~GtI~~v~~~dp~~w~~S~WR~Lq 83 (83)
T PF06507_consen 5 AATGSPFEVFYYPRASPSEFVVPASKYDKALNHPWSVGMRFKMRFETED-SSERRWQGTIVGVSDLDPIRWPGSKWRMLQ 83 (83)
T ss_pred hhcCCeEEEEECCCCCCcceEEEHHHHHHHhcCCCCCCcEEEEEeccCC-CccceeeeEEeEeeccCCCCCCCCCcccCc
Confidence 4679999999999999999999999999999999999999999665553 678899999999999999 69999999996
|
The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=202.20 Aligned_cols=291 Identities=20% Similarity=0.308 Sum_probs=214.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeC
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRG 325 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~g 325 (1715)
-.|+.|++-|.+||+|..||.|.|||+.|...-+.+.+|..+|++++||+||+.|+|+|.|..|.+||+..|.++..++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 6899999999999999999999999999999989999999999999999999999999999999999999999999888
Q ss_pred CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEE
Q 048801 326 HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAY 405 (1715)
Q Consensus 326 H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtslaf 405 (1715)
...+|+.+.|+|...+ .+++.-.+..-.+-++..+.. . .++...+ +. .+....+..|
T Consensus 105 f~spv~~~q~hp~k~n--~~va~~~~~sp~vi~~s~~~h--~-~Lp~d~d---~d---------------ln~sas~~~f 161 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRN--KCVATIMEESPVVIDFSDPKH--S-VLPKDDD---GD---------------LNSSASHGVF 161 (405)
T ss_pred ccCccceeeeccccCC--eEEEEEecCCcEEEEecCCce--e-eccCCCc---cc---------------cccccccccc
Confidence 7889999999998764 333333333344444433211 1 1111100 00 0111233478
Q ss_pred ccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCC-CCeeEEEEccCcccccccccccccccccccccCCcc
Q 048801 406 NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE-NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWF 484 (1715)
Q Consensus 406 SpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~-~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~ 484 (1715)
.+.|+++++|...|.+.+|+..+.+ ++..+.-.. ..|..+.|+-.+
T Consensus 162 dr~g~yIitGtsKGkllv~~a~t~e---------~vas~rits~~~IK~I~~s~~g------------------------ 208 (405)
T KOG1273|consen 162 DRRGKYIITGTSKGKLLVYDAETLE---------CVASFRITSVQAIKQIIVSRKG------------------------ 208 (405)
T ss_pred cCCCCEEEEecCcceEEEEecchhe---------eeeeeeechheeeeEEEEeccC------------------------
Confidence 9999999999999999999998743 344443333 578888888765
Q ss_pred cCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc--cCCCCCeeEEEeCCCCCEEEE
Q 048801 485 CHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL--LPTPRGVNMIVWSLDNRFVLA 562 (1715)
Q Consensus 485 ~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l--~~h~~~VtslafSPDG~~LaT 562 (1715)
..|+.-+.|..|+.|++..-...+.-+. ..+...+ .-....-.+++||.+|.|+++
T Consensus 209 --~~liiNtsDRvIR~ye~~di~~~~r~~e--------------------~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a 266 (405)
T KOG1273|consen 209 --RFLIINTSDRVIRTYEISDIDDEGRDGE--------------------VEPEHKLQDVVNKLQWKKCCFSGDGEYVCA 266 (405)
T ss_pred --cEEEEecCCceEEEEehhhhcccCccCC--------------------cChhHHHHHHHhhhhhhheeecCCccEEEe
Confidence 7999999999999998863111110000 0001111 112234567899999999988
Q ss_pred Eec-CCeEEEEECCCCceEEEEecCC-CCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 563 AIM-DCRICVWNAVDGSLVHSLTGHS-ASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 563 gs~-DGtI~IWDl~sg~~l~tL~gH~-~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
|+. -..++||....|.+++.|.|.. .....+.|+| -.-++++- ..|.|+||..
T Consensus 267 ~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 267 GSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred ccccceeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEEe
Confidence 774 4579999999999999999887 5677899999 44455554 7899999986
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-19 Score=211.50 Aligned_cols=142 Identities=20% Similarity=0.243 Sum_probs=121.6
Q ss_pred CCCCeeEEEeCC-CCCEEEEEecCCeEEEEECCCC-------ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 048801 544 TPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAVDG-------SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 544 h~~~VtslafSP-DG~~LaTgs~DGtI~IWDl~sg-------~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VW 615 (1715)
....|+.+.|.| |...||+++.||.|+||.+..+ ++-..+++|...|+++.|||....+|+++++|-+|++|
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 345689999998 7789999999999999998764 35667899999999999999888999999999999999
Q ss_pred ECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc-ccc-------ccceeecCCCccEEEcC
Q 048801 616 DIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ-KDA-------KYDQFFLGDYRPLIRDS 685 (1715)
Q Consensus 616 Dl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~-k~~-------~~~~~fs~D~r~L~~d~ 685 (1715)
|+.+++....+.+|.+.|.+++|||||+.+|+.+.||.|+||+-.+++.. ... .....|.-|++.++...
T Consensus 706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~G 783 (1012)
T KOG1445|consen 706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVG 783 (1012)
T ss_pred ehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEec
Confidence 99999999999999999999999999999999999999999998877543 111 12346777888776543
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=200.44 Aligned_cols=299 Identities=22% Similarity=0.284 Sum_probs=226.4
Q ss_pred cCCCCCeEEEEECC-CCCEEEEEeCCCeeEEEECCCCCc----------eE-----EEeCCCCCeEEEEecCCCCcceEE
Q 048801 282 RGHEGDITDLAVSS-NNTLVASASNDFVIRVWRLPDGLP----------IS-----VLRGHTGAVTAIAFSPRPSAIYQL 345 (1715)
Q Consensus 282 ~gHs~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~tg~~----------l~-----~L~gH~~~VtsLafSPdg~~~~~L 345 (1715)
+.|.+.|+++.+.+ .|+++++|+.||.|.|||+++... +. .-.+|...|..+.|-|-... .+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG--mF 117 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG--MF 117 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc--ee
Confidence 45889999999987 689999999999999999975421 11 11368889999999997664 78
Q ss_pred EEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC---CCeEEEecCCCeEE
Q 048801 346 LSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN---GTVFVTGSSDTFAR 422 (1715)
Q Consensus 346 aSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd---G~~LatGs~DG~Ir 422 (1715)
.+++.|.++++||.++.+....+.. .+.|.+-+++|- ..++|+|..+-.|+
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~m--------------------------e~~VYshamSp~a~sHcLiA~gtr~~~Vr 171 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKM--------------------------EGKVYSHAMSPMAMSHCLIAAGTRDVQVR 171 (397)
T ss_pred ecccccceEEEeecccceeeEEeec--------------------------CceeehhhcChhhhcceEEEEecCCCcEE
Confidence 9999999999999998876555543 334677777773 35788999999999
Q ss_pred EEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEe
Q 048801 423 VWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWI 502 (1715)
Q Consensus 423 VWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWD 502 (1715)
+-|+..+. ..+.+.||.+.|.++.|+|.. .-.|++|+.||.|++||
T Consensus 172 LCDi~SGs---------~sH~LsGHr~~vlaV~Wsp~~-------------------------e~vLatgsaDg~irlWD 217 (397)
T KOG4283|consen 172 LCDIASGS---------FSHTLSGHRDGVLAVEWSPSS-------------------------EWVLATGSADGAIRLWD 217 (397)
T ss_pred EEeccCCc---------ceeeeccccCceEEEEeccCc-------------------------eeEEEecCCCceEEEEE
Confidence 99998864 467899999999999999975 35889999999999999
Q ss_pred cCCCc-cCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEE
Q 048801 503 PRSRR-SHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVH 581 (1715)
Q Consensus 503 l~t~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~ 581 (1715)
++... +...+.... .........-..|.+.|+.++|+.+|.++++++.|..+++|+..+|+...
T Consensus 218 iRrasgcf~~lD~hn---------------~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 218 IRRASGCFRVLDQHN---------------TKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTL 282 (397)
T ss_pred eecccceeEEeeccc---------------CccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccc
Confidence 98532 110000000 00111222355788999999999999999999999999999998876422
Q ss_pred EEe---cCCCCeEEEEE---ccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEE
Q 048801 582 SLT---GHSASSYVLDV---HPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIY 655 (1715)
Q Consensus 582 tL~---gH~~~V~sLaf---SP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~ 655 (1715)
.-. .|... ..+++ +- +...++---.++.+.++++-+|..++.+.+|-..|.+.+|-|+=+.+.+++.|+.|+
T Consensus 283 ~~~g~~~~n~~-~~~~~~~~~~-~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~ 360 (397)
T KOG4283|consen 283 REFGPIIHNQT-TSFAVHIQSM-DSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIY 360 (397)
T ss_pred ccccccccccc-ccceEEEeec-ccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccc
Confidence 111 11111 11111 12 223344445668999999999999999999988899999999999999999999999
Q ss_pred EEEC
Q 048801 656 LLNT 659 (1715)
Q Consensus 656 IWdl 659 (1715)
.|-.
T Consensus 361 ~w~p 364 (397)
T KOG4283|consen 361 MWSP 364 (397)
T ss_pred cccc
Confidence 9986
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-19 Score=199.04 Aligned_cols=308 Identities=16% Similarity=0.190 Sum_probs=216.4
Q ss_pred EEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCce--EEE--eCCCCCeEEEEecCCCCcceEEEEecCCCcE
Q 048801 279 ASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI--SVL--RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354 (1715)
Q Consensus 279 ~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l--~~L--~gH~~~VtsLafSPdg~~~~~LaSgS~DGtV 354 (1715)
..|++|.+.|++++|+.||++||+++.|++|+||++.+.... +.+ .-.-+-.+.++|.||-.. .++++-...+|
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s--~vv~~~~g~~l 157 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKS--VVVSVKRGNKL 157 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcce--EEEEEccCCEE
Confidence 457899999999999999999999999999999999764211 111 111234688999999875 56666677789
Q ss_pred EEEecCCCCCcceecCCCCCCCccCccCCCC-CCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccC
Q 048801 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPS-NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVED 433 (1715)
Q Consensus 355 rIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~-~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~ 433 (1715)
++|.+...+. |...... ..........|...|..+-...++.+|++++.|..|.+|++. ++
T Consensus 158 ~vyk~~K~~d--------------G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq--- 219 (420)
T KOG2096|consen 158 CVYKLVKKTD--------------GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ--- 219 (420)
T ss_pred EEEEeeeccc--------------CCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc---
Confidence 9997653221 0000000 000011223345557777777888999999999999999997 32
Q ss_pred CCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc
Q 048801 434 SEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG 513 (1715)
Q Consensus 434 ~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~ 513 (1715)
.+..+......-...+.+|+| .+|++++---.|++|.+--++ -+
T Consensus 220 ------~L~~idtnq~~n~~aavSP~G--------------------------RFia~~gFTpDVkVwE~~f~k----dG 263 (420)
T KOG2096|consen 220 ------LLQSIDTNQSSNYDAAVSPDG--------------------------RFIAVSGFTPDVKVWEPIFTK----DG 263 (420)
T ss_pred ------eeeeeccccccccceeeCCCC--------------------------cEEEEecCCCCceEEEEEecc----Cc
Confidence 244444444455667889987 789999999999999764211 11
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC-------CceEEEE---
Q 048801 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD-------GSLVHSL--- 583 (1715)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s-------g~~l~tL--- 583 (1715)
.+. .......+.+|...|..++||++...+++.+.||+++|||+.- .+.+++.
T Consensus 264 ~fq-----------------ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~p 326 (420)
T KOG2096|consen 264 TFQ-----------------EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAP 326 (420)
T ss_pred chh-----------------hhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcc
Confidence 111 1123456789999999999999999999999999999999842 2233322
Q ss_pred -ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE-cccceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 584 -TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE-IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 584 -~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~-~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
....+.-..|+++| .+..|+. +....++++..++|+....+. .|...|.+++|++||+++|++++ ..++++.-..
T Consensus 327 l~aag~~p~RL~lsP-~g~~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd-r~vrv~~ntp 403 (420)
T KOG2096|consen 327 LHAAGSEPVRLELSP-SGDSLAV-SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD-RYVRVIRNTP 403 (420)
T ss_pred hhhcCCCceEEEeCC-CCcEEEe-ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc-eeeeeecCCC
Confidence 12233334899999 6666654 345579999999998777665 46778999999999999999876 6777776333
Q ss_pred C
Q 048801 662 G 662 (1715)
Q Consensus 662 G 662 (1715)
|
T Consensus 404 g 404 (420)
T KOG2096|consen 404 G 404 (420)
T ss_pred c
Confidence 3
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=217.55 Aligned_cols=313 Identities=19% Similarity=0.254 Sum_probs=215.5
Q ss_pred EEEcC---CCCEEEEEeCCCcEEEEeCCCCcE------EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCc
Q 048801 249 AIFDR---SGRFVITGSDDRLVKIWSMETAFC------LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP 319 (1715)
Q Consensus 249 VafSp---DG~~LaTGS~DGtIrIWDl~tgk~------l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~ 319 (1715)
+.|++ ....||.+..||.|.++|...... +.....|.+.|.++.|-|....|++++.|.++++||+.++++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 44554 345789999999999999865432 345567999999999999778899999999999999999988
Q ss_pred eEE--EeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCC-C----CCCCCCCC
Q 048801 320 ISV--LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV-P----SNNGPSSS 392 (1715)
Q Consensus 320 l~~--L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~-~----~~~~~~~~ 392 (1715)
+.. +.||.+.|.+++|.|.+.. .|++|+.||.|.|||++-...-.. .. ....+.+.... + ........
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~--vF~tGgRDg~illWD~R~n~~d~~-e~--~~~~~~~~~n~~ptpskp~~kr~~k 209 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPA--VFCTGGRDGEILLWDCRCNGVDAL-EE--FDNRIYGRHNTAPTPSKPLKKRIRK 209 (720)
T ss_pred ecceeecccccccchhhhccCCCc--ceeeccCCCcEEEEEEeccchhhH-HH--HhhhhhccccCCCCCCchhhccccc
Confidence 776 8899999999999999875 799999999999999975441100 00 00000000000 0 00111222
Q ss_pred CCCCCcceeE---EEEccCCCeEEEecC-CCeEEEEeCCCCCccCCCCCceeeeeecCC---CCCeeEEEEccCcccccc
Q 048801 393 NGLQSHQILC---CAYNANGTVFVTGSS-DTFARVWSACKSSVEDSEQPIHELDVLSGH---ENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 393 ~~~h~~~Vts---lafSpdG~~LatGs~-DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH---~~~V~sLafspdg~as~~ 465 (1715)
...+...|.+ +.+..|...||+++. |+.|+|||+++.......++... ..+..| .-.+.++.....|
T Consensus 210 ~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~-~~~~t~skrs~G~~nL~lDssG----- 283 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS-DKYPTHSKRSVGQVNLILDSSG----- 283 (720)
T ss_pred cccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc-cCccCcccceeeeEEEEecCCC-----
Confidence 2334444444 555667788888887 99999999998765443333221 222223 2234455544433
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
.+|.+.+.|+.|.+|++.+... .++..+.++.
T Consensus 284 ---------------------t~L~AsCtD~sIy~ynm~s~s~---------------------------sP~~~~sg~~ 315 (720)
T KOG0321|consen 284 ---------------------TYLFASCTDNSIYFYNMRSLSI---------------------------SPVAEFSGKL 315 (720)
T ss_pred ---------------------CeEEEEecCCcEEEEeccccCc---------------------------CchhhccCcc
Confidence 4554444599999999986321 1111122221
Q ss_pred C--CeeEEEeCCCCCEEEEEecCCeEEEEECCCCce-EEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC
Q 048801 546 R--GVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL-VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 546 ~--~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~-l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
. ....-..+||+.+|++|+.|..+++|.+.+.+. ...+.||.-.|++++|.|..-.-+++++.|-+++||++..+
T Consensus 316 ~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 316 NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 1 122335789999999999999999999988654 55678999999999999866666788899999999999654
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-19 Score=198.20 Aligned_cols=264 Identities=16% Similarity=0.212 Sum_probs=209.0
Q ss_pred EEEEeCCCeeEEEECCC------------CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcce
Q 048801 300 VASASNDFVIRVWRLPD------------GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPR 367 (1715)
Q Consensus 300 LASGS~DGtIrVWDl~t------------g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~ 367 (1715)
|++|+....|.-+++.- ..++..+..|.+.|++++.+. . ++++|+.|-+|+|||+.....+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~--~---~~aSGssDetI~IYDm~k~~qlg~ 78 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSG--P---YVASGSSDETIHIYDMRKRKQLGI 78 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecc--e---eEeccCCCCcEEEEeccchhhhcc
Confidence 56666666666555431 123556678999999999975 3 899999999999999987654433
Q ss_pred ecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC--eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec
Q 048801 368 IYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT--VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS 445 (1715)
Q Consensus 368 i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~--~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~ 445 (1715)
+ ..|.+.|+++.|.+.-. .|++|+.||.|.+|+... ..++..+.
T Consensus 79 l-------------------------l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~---------W~~~~slK 124 (362)
T KOG0294|consen 79 L-------------------------LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS---------WELLKSLK 124 (362)
T ss_pred e-------------------------eccccceEEEEecCCcchhheeeecCCCcEEEEEcCC---------eEEeeeec
Confidence 2 33577799999998765 899999999999999965 56789999
Q ss_pred CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCC
Q 048801 446 GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPP 525 (1715)
Q Consensus 446 gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~ 525 (1715)
+|.+.|+.|+.+|.+ .+-++.+.|+.+++||+-.++.-..
T Consensus 125 ~H~~~Vt~lsiHPS~--------------------------KLALsVg~D~~lr~WNLV~Gr~a~v-------------- 164 (362)
T KOG0294|consen 125 AHKGQVTDLSIHPSG--------------------------KLALSVGGDQVLRTWNLVRGRVAFV-------------- 164 (362)
T ss_pred ccccccceeEecCCC--------------------------ceEEEEcCCceeeeehhhcCcccee--------------
Confidence 999999999999986 7888999999999999987552111
Q ss_pred CCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEE
Q 048801 526 PPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMS 605 (1715)
Q Consensus 526 ~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaS 605 (1715)
..-...-+.+.|+|.|.+++.++.+ .|-||.+.+......+... ..+.++.| .++..|++
T Consensus 165 ----------------~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~--l~~~~L~v 224 (362)
T KOG0294|consen 165 ----------------LNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATF--LDGSELLV 224 (362)
T ss_pred ----------------eccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeee--cCCceEEE
Confidence 1111123348999999988888765 6889998887666555433 34556666 35678889
Q ss_pred EeCCCcEEEEECCCCceEEEEEcccceEEEEEE--cCCCCEEEEEeCCCeEEEEECCCC
Q 048801 606 AGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKF--SPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 606 gs~DGtI~VWDl~tgk~l~tl~~h~~~V~svaf--SPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
|+.|+.|.+||..++.++..+.+|...|-++.+ .|++.+|++++.||.|.|||+...
T Consensus 225 G~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 225 GGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 999999999999999999999999999998874 578999999999999999999765
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.7e-20 Score=211.84 Aligned_cols=282 Identities=15% Similarity=0.186 Sum_probs=229.8
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC---CceEEEeC--CCCCeEEEEecCCCCcceEEEEecCCCcEEEE
Q 048801 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG---LPISVLRG--HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357 (1715)
Q Consensus 283 gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg---~~l~~L~g--H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIW 357 (1715)
.|..-|.++++|...+.++||+. |.|+|||+... .++..|.. ....|.++..+|++. .|++|+.-.+|.||
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr---tLivGGeastlsiW 492 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR---TLIVGGEASTLSIW 492 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc---eEEeccccceeeee
Confidence 38888999999999999999976 68999999643 44555543 356789999999998 89999999999999
Q ss_pred ecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCC
Q 048801 358 DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQP 437 (1715)
Q Consensus 358 Dl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~ 437 (1715)
|+.......... .....-....++.+||.++.++++.||.|.|||+.+.
T Consensus 493 DLAapTprikae-----------------------ltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-------- 541 (705)
T KOG0639|consen 493 DLAAPTPRIKAE-----------------------LTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-------- 541 (705)
T ss_pred eccCCCcchhhh-----------------------cCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc--------
Confidence 997543211110 0111233677899999999999999999999999874
Q ss_pred ceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccc
Q 048801 438 IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTR 517 (1715)
Q Consensus 438 ~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~ 517 (1715)
..++.+.+|.+.+.||.++++| ..|.||+-|.+|+.||++.++....
T Consensus 542 -~~VrqfqGhtDGascIdis~dG--------------------------tklWTGGlDntvRcWDlregrqlqq------ 588 (705)
T KOG0639|consen 542 -TLVRQFQGHTDGASCIDISKDG--------------------------TKLWTGGLDNTVRCWDLREGRQLQQ------ 588 (705)
T ss_pred -eeeecccCCCCCceeEEecCCC--------------------------ceeecCCCccceeehhhhhhhhhhh------
Confidence 4578899999999999999987 7999999999999999997542211
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEcc
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHP 597 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP 597 (1715)
......|.++.++|.+.+|++|-.++.|.|... ++.....+.-|..-|.++.|.+
T Consensus 589 ------------------------hdF~SQIfSLg~cP~~dWlavGMens~vevlh~-skp~kyqlhlheScVLSlKFa~ 643 (705)
T KOG0639|consen 589 ------------------------HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT-SKPEKYQLHLHESCVLSLKFAY 643 (705)
T ss_pred ------------------------hhhhhhheecccCCCccceeeecccCcEEEEec-CCccceeecccccEEEEEEecc
Confidence 112346888999999999999999999988876 4445566778999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 598 FNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 598 ~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
-++++++.|.|+.+..|..--|..+.... ....|.++.+|-|.++|++|+.|....||.+
T Consensus 644 -cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 644 -CGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -cCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 77888999999999999998888776665 5678999999999999999999988888875
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-19 Score=197.48 Aligned_cols=286 Identities=20% Similarity=0.302 Sum_probs=208.6
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC----CcEEEEecCCCCCeEEEEECC--CCCEEEEEeCCCeeEEEE
Q 048801 240 RGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET----AFCLASCRGHEGDITDLAVSS--NNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 240 ~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~t----gk~l~tL~gHs~~VtsLafSp--Dg~lLASGS~DGtIrVWD 313 (1715)
.+|.+-|.|+.|+..|+.+|||+.|++|+|||... -.+....+.|.+.|..|.|.+ -|+.||+++.|++|.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 48999999999999999999999999999999643 356677889999999999976 589999999999999997
Q ss_pred CCC---------CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 314 LPD---------GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 314 l~t---------g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
=.. .....++....+.|+.+.|.|..... .|++++.||+||||+.-....+....+......
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGL-klA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~-------- 160 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGL-KLAAASADGILRIYEAPDPMNLSQWTLQHEIQN-------- 160 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcce-EEEEeccCcEEEEEecCCccccccchhhhhhhh--------
Confidence 421 12345666778899999999986554 899999999999998765444333332221111
Q ss_pred CCCCCCCCCCCCCcceeEEEEccC---CCeEEEecCC-----CeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEE
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNAN---GTVFVTGSSD-----TFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF 456 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSpd---G~~LatGs~D-----G~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLaf 456 (1715)
.......+.....|+.|++. ..+||+|+.+ +.+.||..... ......+..+.+|..+|+.|+|
T Consensus 161 ----~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~-----~rKw~kva~L~d~~dpI~di~w 231 (361)
T KOG2445|consen 161 ----VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNEN-----GRKWLKVAELPDHTDPIRDISW 231 (361)
T ss_pred ----ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCC-----cceeeeehhcCCCCCcceeeee
Confidence 11122334556789999974 3678888765 47889887543 2234566778899999999999
Q ss_pred ccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCC
Q 048801 457 SGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536 (1715)
Q Consensus 457 spdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 536 (1715)
.|+.. .....|++++.|| |+||.+......-. . .....+.........
T Consensus 232 APn~G----------------------r~y~~lAvA~kDg-v~I~~v~~~~s~i~--------~-ee~~~~~~~~~l~v~ 279 (361)
T KOG2445|consen 232 APNIG----------------------RSYHLLAVATKDG-VRIFKVKVARSAIE--------E-EEVLAPDLMTDLPVE 279 (361)
T ss_pred ccccC----------------------CceeeEEEeecCc-EEEEEEeeccchhh--------h-hcccCCCCccccceE
Confidence 99741 0136899999999 99999874221000 0 000000011112223
Q ss_pred CcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECC
Q 048801 537 PRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV 575 (1715)
Q Consensus 537 ~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~ 575 (1715)
.+..+..|.+.|..+.|+-.|..|++.+.||.|++|...
T Consensus 280 ~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 280 KVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 445577899999999999999999999999999999763
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-19 Score=219.03 Aligned_cols=284 Identities=18% Similarity=0.242 Sum_probs=223.1
Q ss_pred cCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC-CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecC
Q 048801 282 RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG-LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 282 ~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg-~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
..|....+.|+|.|+|.+|++++.||.|++|+.... ..-.++..+...|.+++.... +|++|+.+++|.+|.+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~-----~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN-----HFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc-----ceEEeeccceEEEeeCC
Confidence 368899999999999999999999999999987655 333444447778888877554 79999999999999988
Q ss_pred CCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCcee
Q 048801 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHE 440 (1715)
Q Consensus 361 tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~ 440 (1715)
.++.-..+ ....-++++++|+.+|.++|.|+.|-.|++.++.+.. .
T Consensus 85 s~~~~~iL-------------------------~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s---------~ 130 (933)
T KOG1274|consen 85 SGEEDTIL-------------------------ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS---------Q 130 (933)
T ss_pred CCCcccee-------------------------eeeeccceEEEEecCCcEEEeecCceeEEEEeccccc---------h
Confidence 76532111 1124458999999999999999999999999997643 3
Q ss_pred eeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccccc
Q 048801 441 LDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYH 520 (1715)
Q Consensus 441 l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~ 520 (1715)
...+.+|.++|.+|.|+|.+ .+||+.+.||.|+||++.++.+............
T Consensus 131 ~~~lrgh~apVl~l~~~p~~--------------------------~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~ 184 (933)
T KOG1274|consen 131 EKVLRGHDAPVLQLSYDPKG--------------------------NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE 184 (933)
T ss_pred heeecccCCceeeeeEcCCC--------------------------CEEEEEecCceEEEEEcccchhhhhcccCCcccc
Confidence 56789999999999999987 8999999999999999998664433322111100
Q ss_pred ccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec--CCCCeEEEEEccC
Q 048801 521 LKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG--HSASSYVLDVHPF 598 (1715)
Q Consensus 521 l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g--H~~~V~sLafSP~ 598 (1715)
......+..++|+|+|..+++.+.|+.|.+|+..++.....|.. +...+.++.|+|
T Consensus 185 ---------------------~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP- 242 (933)
T KOG1274|consen 185 ---------------------FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP- 242 (933)
T ss_pred ---------------------ccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-
Confidence 00134577899999988888899999999999999999888864 444589999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEE
Q 048801 599 NPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYL 656 (1715)
Q Consensus 599 dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~I 656 (1715)
.|.+||+++.||.|.|||+.+... .-....|.+++|-|++..|-....-|...+
T Consensus 243 nG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 243 NGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred CCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeecccccc
Confidence 689999999999999999987322 112457999999999987766555444433
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.6e-20 Score=224.14 Aligned_cols=285 Identities=18% Similarity=0.291 Sum_probs=219.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----cEEEEecCCC---CCeEEEEECC-CCCEEEEEeCCCeeEEEECCC-
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETA----FCLASCRGHE---GDITDLAVSS-NNTLVASASNDFVIRVWRLPD- 316 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg----k~l~tL~gHs---~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~t- 316 (1715)
..+|...++-..|+.++. ..++|+.+... ++...+++.. -.+.++.|.. +.++||+++..|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~ 120 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS 120 (839)
T ss_pred cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence 445666788888888875 47888876532 2222222211 1345667764 568999999999999999986
Q ss_pred --CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 317 --GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 317 --g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
.+.+..|..|...|+++.|++...+ +|++|+.||+|++||++......++ .
T Consensus 121 ~rnk~l~~f~EH~Rs~~~ldfh~tep~--iliSGSQDg~vK~~DlR~~~S~~t~-------------------------~ 173 (839)
T KOG0269|consen 121 IRNKLLTVFNEHERSANKLDFHSTEPN--ILISGSQDGTVKCWDLRSKKSKSTF-------------------------R 173 (839)
T ss_pred ccchhhhHhhhhccceeeeeeccCCcc--EEEecCCCceEEEEeeecccccccc-------------------------c
Confidence 5667788899999999999998775 8999999999999999876543332 1
Q ss_pred CCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccc
Q 048801 395 LQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 395 ~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
.....|..+.|+| .+..|+++...|.+++||++. +..+...+.+|.++|.|+.|+|+.
T Consensus 174 ~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq--------p~r~~~k~~AH~GpV~c~nwhPnr------------- 232 (839)
T KOG0269|consen 174 SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ--------PDRCEKKLTAHNGPVLCLNWHPNR------------- 232 (839)
T ss_pred ccchhhhceeeccCCCceEEEecCCceEEEeeccC--------chhHHHHhhcccCceEEEeecCCC-------------
Confidence 2356699999999 578999999999999999975 456677889999999999999975
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW 553 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf 553 (1715)
.+||||+.|+.|+||+..+.+... ........+|.+|.|
T Consensus 233 -------------~~lATGGRDK~vkiWd~t~~~~~~----------------------------~~tInTiapv~rVkW 271 (839)
T KOG0269|consen 233 -------------EWLATGGRDKMVKIWDMTDSRAKP----------------------------KHTINTIAPVGRVKW 271 (839)
T ss_pred -------------ceeeecCCCccEEEEeccCCCccc----------------------------eeEEeecceeeeeee
Confidence 799999999999999998643111 112233567999999
Q ss_pred CCCCCE-EEEEe--cCCeEEEEECCCCc-eEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC
Q 048801 554 SLDNRF-VLAAI--MDCRICVWNAVDGS-LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 554 SPDG~~-LaTgs--~DGtI~IWDl~sg~-~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
-|...+ |++++ .|-.|+|||++..- +..++..|...++.++|-..+...+.+++.||+|..-.++++
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 998765 45544 47789999997654 567889999999999997766788999999998876655443
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-19 Score=195.63 Aligned_cols=302 Identities=21% Similarity=0.325 Sum_probs=227.3
Q ss_pred EcCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCc-------EEE--------EecCCCCCeEEEEECC-CCCEEE
Q 048801 239 LRGHRDAVYCAIFDR-SGRFVITGSDDRLVKIWSMETAF-------CLA--------SCRGHEGDITDLAVSS-NNTLVA 301 (1715)
Q Consensus 239 L~GH~~~Vt~VafSp-DG~~LaTGS~DGtIrIWDl~tgk-------~l~--------tL~gHs~~VtsLafSp-Dg~lLA 301 (1715)
.+.|.+.|+++.+.+ .|+|+++|+.||.|.|||++... ... .-.+|.-.|.++.|-| |..++.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 457999999999987 68999999999999999997542 111 1136888999999999 667888
Q ss_pred EEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCcc
Q 048801 302 SASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKS 381 (1715)
Q Consensus 302 SGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~ 381 (1715)
+++.|.+++|||..+.+....|. -.+.|++-+++|-...-.++++|..|-.|++-|+.+|.+...
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~-------------- 183 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT-------------- 183 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee--------------
Confidence 99999999999999988777776 678899999999765445788888999999999998876443
Q ss_pred CCCCCCCCCCCCCCCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCc----cCCC--CCceeeeeecCCCCCeeEE
Q 048801 382 NVPSNNGPSSSNGLQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSV----EDSE--QPIHELDVLSGHENDVNYV 454 (1715)
Q Consensus 382 ~~~~~~~~~~~~~~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~----~~~~--~~~~~l~~l~gH~~~V~sL 454 (1715)
..+|...|.++.|+|... .|++|+.||.|++||++.... .+.. .....+..-..|.+.|+.+
T Consensus 184 -----------LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngl 252 (397)
T KOG4283|consen 184 -----------LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGL 252 (397)
T ss_pred -----------eccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeee
Confidence 356788999999999776 578999999999999986421 0001 1112233456788999999
Q ss_pred EEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 455 QFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 455 afspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
+|..++ .++++++.|..+++|+..+++.... .+
T Consensus 253 a~tSd~--------------------------~~l~~~gtd~r~r~wn~~~G~ntl~--~~------------------- 285 (397)
T KOG4283|consen 253 AWTSDA--------------------------RYLASCGTDDRIRVWNMESGRNTLR--EF------------------- 285 (397)
T ss_pred eecccc--------------------------hhhhhccCccceEEeecccCccccc--cc-------------------
Confidence 999887 7999999999999999887652110 00
Q ss_pred CCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEE
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIV 614 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~V 614 (1715)
+..... ....-.+. +. +.+...++.--.++.+.++++-.|..+..+.+|...|.|.++-| +-....+|..|+.|..
T Consensus 286 g~~~~n-~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~-~fq~~~tg~~d~ni~~ 361 (397)
T KOG4283|consen 286 GPIIHN-QTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRP-DFEQCFTGDMNGNIYM 361 (397)
T ss_pred cccccc-ccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecC-chhhhhccccCCcccc
Confidence 000000 00011121 22 33444444444568999999999999999999988999999988 5556778999999999
Q ss_pred EEC
Q 048801 615 WDI 617 (1715)
Q Consensus 615 WDl 617 (1715)
|-.
T Consensus 362 w~p 364 (397)
T KOG4283|consen 362 WSP 364 (397)
T ss_pred ccc
Confidence 976
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-19 Score=207.03 Aligned_cols=307 Identities=20% Similarity=0.267 Sum_probs=234.1
Q ss_pred EeCCCCcEEEEecCCCCCeEEEEECCCC--CEEEEEeCCCeeEEEECCCC----CceEEEeCCCCCeEEEEecCCCCcce
Q 048801 270 WSMETAFCLASCRGHEGDITDLAVSSNN--TLVASASNDFVIRVWRLPDG----LPISVLRGHTGAVTAIAFSPRPSAIY 343 (1715)
Q Consensus 270 WDl~tgk~l~tL~gHs~~VtsLafSpDg--~lLASGS~DGtIrVWDl~tg----~~l~~L~gH~~~VtsLafSPdg~~~~ 343 (1715)
.++.+-......+-+.+.|++++|+|.. ++||+|+.-|+|-+||+.+. .-+..+..|.++|.+|.|+|.+..
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s-- 248 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS-- 248 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh--
Confidence 4455555666777789999999999954 68999999999999999532 345677889999999999998875
Q ss_pred EEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEE
Q 048801 344 QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARV 423 (1715)
Q Consensus 344 ~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrV 423 (1715)
.+++.+.||+|++-|+..+.....+... .....+..+.|+.+...++.|..=|...+
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~-----------------------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~ 305 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSLD-----------------------TDNIWFSSLDFSAESRSVLFGDNVGNFNV 305 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhcC-----------------------ccceeeeeccccCCCccEEEeecccceEE
Confidence 7999999999999999876543222211 11334677888888888888887789999
Q ss_pred EeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEec
Q 048801 424 WSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIP 503 (1715)
Q Consensus 424 WDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl 503 (1715)
||+++.. .....+.-|...|+.++++|.. +.+|+|++.|++++|||+
T Consensus 306 iD~R~~~--------s~~~~~~lh~kKI~sv~~NP~~-------------------------p~~laT~s~D~T~kIWD~ 352 (498)
T KOG4328|consen 306 IDLRTDG--------SEYENLRLHKKKITSVALNPVC-------------------------PWFLATASLDQTAKIWDL 352 (498)
T ss_pred EEeecCC--------ccchhhhhhhcccceeecCCCC-------------------------chheeecccCcceeeeeh
Confidence 9998763 3345566788899999999964 579999999999999999
Q ss_pred CCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECC----CCce
Q 048801 504 RSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV----DGSL 579 (1715)
Q Consensus 504 ~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~----sg~~ 579 (1715)
+.-... ..+......|...|.+..|||.|..|+|.+.|..|+|||.. .-.+
T Consensus 353 R~l~~K-------------------------~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 353 RQLRGK-------------------------ASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred hhhcCC-------------------------CCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCc
Confidence 852200 01245567899999999999999889999999999999983 2333
Q ss_pred EEEEecCCC------CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccc-eEEE-EEEcCCCCEEE-EEeC
Q 048801 580 VHSLTGHSA------SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRF-KLVD-GKFSPDGTSIV-LSDD 650 (1715)
Q Consensus 580 l~tL~gH~~------~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~-~V~s-vafSPDG~~LA-sgs~ 650 (1715)
+.++. |.. .....+|.| +..++++|-+-..|-|+|-..++.+..+..... .|.+ ..|+|-+..++ .++.
T Consensus 408 ~~~I~-Hn~~t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s 485 (498)
T KOG4328|consen 408 LGTIP-HNNRTGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNS 485 (498)
T ss_pred cceee-ccCcccccccchhheeCC-CccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCc
Confidence 33332 221 234457999 778999999999999999988887877654333 4554 48999988555 5567
Q ss_pred CCeEEEEECCC
Q 048801 651 VGQIYLLNTGQ 661 (1715)
Q Consensus 651 DG~I~IWdl~t 661 (1715)
.|.|+||....
T Consensus 486 ~Gki~vft~k~ 496 (498)
T KOG4328|consen 486 SGKIYVFTNKK 496 (498)
T ss_pred cceEEEEecCC
Confidence 89999997543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-18 Score=205.11 Aligned_cols=396 Identities=13% Similarity=0.155 Sum_probs=266.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe
Q 048801 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~ 324 (1715)
.|+.++|-|||..|+.+.. ..+.|||...|..++++++|...|+|++|+.||+.+|+|+.|..|.||.-.-...+ ..
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY- 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY- 90 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee-
Confidence 8999999999998888754 57999999999999999999999999999999999999999999999985422222 22
Q ss_pred CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEE
Q 048801 325 GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCA 404 (1715)
Q Consensus 325 gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsla 404 (1715)
.|...|.|+.|+|-.. .|++++.. ..-+|.......... .....|.+++
T Consensus 91 SH~D~IQCMsFNP~~h---~LasCsLs-dFglWS~~qK~V~K~---------------------------kss~R~~~Cs 139 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITH---QLASCSLS-DFGLWSPEQKSVSKH---------------------------KSSSRIICCS 139 (1081)
T ss_pred ccCCeeeEeecCchHH---Hhhhcchh-hccccChhhhhHHhh---------------------------hhheeEEEee
Confidence 5999999999999876 67777654 366887654332111 1134589999
Q ss_pred EccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccc-------------
Q 048801 405 YNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF------------- 471 (1715)
Q Consensus 405 fSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~------------- 471 (1715)
|..||++|+.|-.+|+|.|-+... .+...+....|.+.+|.+++|+|........+....
T Consensus 140 WtnDGqylalG~~nGTIsiRNk~g-------Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG 212 (1081)
T KOG1538|consen 140 WTNDGQYLALGMFNGTISIRNKNG-------EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG 212 (1081)
T ss_pred ecCCCcEEEEeccCceEEeecCCC-------CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc
Confidence 999999999999999999885532 223334555667889999999987532221111100
Q ss_pred -------cccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCC
Q 048801 472 -------KEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPT 544 (1715)
Q Consensus 472 -------~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h 544 (1715)
....-|-+...+..+.+++.|+.|+.+.+|.-.. -. ..++-..
T Consensus 213 ~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G-vr-----------------------------LGTvg~~ 262 (1081)
T KOG1538|consen 213 KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG-VR-----------------------------LGTVGEQ 262 (1081)
T ss_pred eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC-eE-----------------------------Eeecccc
Confidence 0111122223345678999999999999984331 11 1122234
Q ss_pred CCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc----------------------------------------------
Q 048801 545 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS---------------------------------------------- 578 (1715)
Q Consensus 545 ~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~---------------------------------------------- 578 (1715)
...|..++..|++++++.|+.||+|-.|++...+
T Consensus 263 D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnr 342 (1081)
T KOG1538|consen 263 DSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNR 342 (1081)
T ss_pred ceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhh
Confidence 5679999999999999999999999999874211
Q ss_pred -------eE--EEEe----------------------------cC-----CCCeEEEEEc--------------------
Q 048801 579 -------LV--HSLT----------------------------GH-----SASSYVLDVH-------------------- 596 (1715)
Q Consensus 579 -------~l--~tL~----------------------------gH-----~~~V~sLafS-------------------- 596 (1715)
.+ ..+. +| .....|+.|.
T Consensus 343 LAVQLpeki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~M~S~iRYikV~G 422 (1081)
T KOG1538|consen 343 LAVQLPEKILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQMESLIRYIKVIG 422 (1081)
T ss_pred heecccceEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhhhhhHHHHHHhhhhhc
Confidence 00 0000 00 0111222221
Q ss_pred -cCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc--cccccee
Q 048801 597 -PFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK--DAKYDQF 673 (1715)
Q Consensus 597 -P~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k--~~~~~~~ 673 (1715)
|-+..-|+.|-.+|.|.-.=+.+.-++-.. .....|.|+.++..-+.||+.++.++..++|+.+++..- ...+++.
T Consensus 423 GP~gREgL~vGlknGqV~kiF~dN~~PiLl~-~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QEpg~nSV~ 501 (1081)
T KOG1538|consen 423 GPPGREGLLVGLKNGQVLKIFVDNLFPILLL-KQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQEPGANSVA 501 (1081)
T ss_pred CCCCcceeEEEecCCcEEEEEecCCchhhee-cccceeEEeeccCCcceEEEEccCCeEEEEEccCCceEeecCCCceEE
Confidence 112223333444443322112222222212 134578899999999999999999999999999998764 3346777
Q ss_pred ecCCCc-cEEEcCCCCeeecccccccCcCCCCCcccCCCC
Q 048801 674 FLGDYR-PLIRDSLGNVLDQETQLVPHRRNIQDPLCDSSM 712 (1715)
Q Consensus 674 fs~D~r-~L~~d~~g~vld~~tq~~p~~~~~~~~lvD~~~ 712 (1715)
|.+... .|+++++|+.--....+++|...++.+.+..-+
T Consensus 502 wNT~~E~MlcfT~~g~L~VR~~~~P~h~qk~~G~VvG~~g 541 (1081)
T KOG1538|consen 502 WNTQCEDMLCFTGGGYLNVRASTFPVHRQKLQGFVVGYNG 541 (1081)
T ss_pred eeccccceEEEecCCceEEEeccCCcchhcceEEEEEecC
Confidence 776654 566787777666667777777666666555433
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.5e-19 Score=209.32 Aligned_cols=287 Identities=16% Similarity=0.230 Sum_probs=220.4
Q ss_pred eeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCC--EEEEEeCCCeeEE
Q 048801 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT--LVASASNDFVIRV 311 (1715)
Q Consensus 234 k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~--lLASGS~DGtIrV 311 (1715)
.+-..++||++.|.||..+|.|.+||+|+.||+|+||.+.||+|+.++. ..+.|.||+|+|.+. +||++-... +.|
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~i 468 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLI 468 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEE
Confidence 3556789999999999999999999999999999999999999999987 566899999999653 455543332 333
Q ss_pred EECCCC-------------------------------------CceEEEeCCCCCeEEEEecCCCCcceEEEEecC---C
Q 048801 312 WRLPDG-------------------------------------LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD---D 351 (1715)
Q Consensus 312 WDl~tg-------------------------------------~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~---D 351 (1715)
-+..-| .-++..-.|...|..|.|+..|. ||++... .
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD---YlatV~~~~~~ 545 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD---YLATVMPDSGN 545 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc---eEEEeccCCCc
Confidence 332111 01223335888999999999998 6776544 4
Q ss_pred CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCc
Q 048801 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 352 GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~ 431 (1715)
..|.|+++........+ ....+.|.++.|+|...+|++++. ..|+|||+....
T Consensus 546 ~~VliHQLSK~~sQ~PF-------------------------~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqe- 598 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPF-------------------------RKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQE- 598 (733)
T ss_pred ceEEEEecccccccCch-------------------------hhcCCceeEEEecCCCceEEEEec-cceEEEehhHHH-
Confidence 56888888654422111 122455999999999998888875 789999997632
Q ss_pred cCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcc
Q 048801 432 EDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGK 511 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~ 511 (1715)
.+..+......|..++.+|.| +.|+.|+.|+.+..+|+.-.
T Consensus 599 --------lvKkL~tg~kwiS~msihp~G--------------------------Dnli~gs~d~k~~WfDldls----- 639 (733)
T KOG0650|consen 599 --------LVKKLLTGSKWISSMSIHPNG--------------------------DNLILGSYDKKMCWFDLDLS----- 639 (733)
T ss_pred --------HHHHHhcCCeeeeeeeecCCC--------------------------CeEEEecCCCeeEEEEcccC-----
Confidence 244445555688999999987 89999999999999998742
Q ss_pred cccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC---------CceEEE
Q 048801 512 VGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD---------GSLVHS 582 (1715)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s---------g~~l~t 582 (1715)
..+.+++..|...++.++|++.-.++++|+.||++.|+--.- --++..
T Consensus 640 -----------------------skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 640 -----------------------SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred -----------------------cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 235567778999999999999999999999999999985321 124677
Q ss_pred EecCCCC----eEEEEEccCCCcEEEEEeCCCcEEEE
Q 048801 583 LTGHSAS----SYVLDVHPFNPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 583 L~gH~~~----V~sLafSP~dg~lLaSgs~DGtI~VW 615 (1715)
|.+|... |..+.||| ..-+|+++|.||+|++|
T Consensus 697 L~gH~~~~~~gVLd~~wHP-~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 697 LRGHEKTNDLGVLDTIWHP-RQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccCceeecccceEeecccC-CCceEEecCCCceEEee
Confidence 8898655 88889999 66678899999999998
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-19 Score=210.37 Aligned_cols=312 Identities=14% Similarity=0.205 Sum_probs=227.3
Q ss_pred EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEE
Q 048801 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356 (1715)
Q Consensus 277 ~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrI 356 (1715)
+...++||++.|.||...|.|.+||+|+.||+|+||.+.+|.+++++. ..+.|.||+|+|.+... .|+++- ...+.|
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~-vLAvA~-~~~~~i 468 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLC-VLAVAV-GECVLI 468 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCce-eEEEEe-cCceEE
Confidence 445678999999999999999999999999999999999999999887 56789999999998753 444444 344666
Q ss_pred EecCCCCCcce-----ecCCCCCCCcc----CccCCC---CCCCCCCCCCCCCcceeEEEEccCCCeEEEecC---CCeE
Q 048801 357 WDARYSQYSPR-----IYLPKPPDAIT----GKSNVP---SNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS---DTFA 421 (1715)
Q Consensus 357 WDl~tg~~l~~-----i~~~~~~~~i~----g~~~~~---~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~---DG~I 421 (1715)
.+..-|..+.. +....+..... ..+.-. ...........|...|..+.|+..|.+|++... ...|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 66554421111 00000000000 000000 000112234456778999999999999998765 3578
Q ss_pred EEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEE
Q 048801 422 RVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW 501 (1715)
Q Consensus 422 rVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIW 501 (1715)
.|+++..... ...+....+.|.++.|+|.. .+|++++ ...|+||
T Consensus 549 liHQLSK~~s---------Q~PF~kskG~vq~v~FHPs~--------------------------p~lfVaT-q~~vRiY 592 (733)
T KOG0650|consen 549 LIHQLSKRKS---------QSPFRKSKGLVQRVKFHPSK--------------------------PYLFVAT-QRSVRIY 592 (733)
T ss_pred EEEecccccc---------cCchhhcCCceeEEEecCCC--------------------------ceEEEEe-ccceEEE
Confidence 8999976432 23344456789999999964 3444443 5689999
Q ss_pred ecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC-ceE
Q 048801 502 IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG-SLV 580 (1715)
Q Consensus 502 Dl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg-~~l 580 (1715)
|+..+. .+..+......|..++++|.|..|++|+.|+.++.+|+.-. ++.
T Consensus 593 dL~kqe-----------------------------lvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPy 643 (733)
T KOG0650|consen 593 DLSKQE-----------------------------LVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPY 643 (733)
T ss_pred ehhHHH-----------------------------HHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchh
Confidence 987533 22334445567899999999999999999999999999654 677
Q ss_pred EEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC------CC---ceEEEEEcccce----EEEEEEcCCCCEEEE
Q 048801 581 HSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW------EG---TPIRIYEIGRFK----LVDGKFSPDGTSIVL 647 (1715)
Q Consensus 581 ~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~------tg---k~l~tl~~h~~~----V~svafSPDG~~LAs 647 (1715)
+++.-|...|++|+||+ .--++++|+.||++.|+.-. .. -++..+.+|... |.++.|+|...+|++
T Consensus 644 k~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfs 722 (733)
T KOG0650|consen 644 KTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFS 722 (733)
T ss_pred HHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEe
Confidence 88899999999999998 66789999999999998532 11 245667776544 889999999999999
Q ss_pred EeCCCeEEEE
Q 048801 648 SDDVGQIYLL 657 (1715)
Q Consensus 648 gs~DG~I~IW 657 (1715)
++.||.|++|
T Consensus 723 AGAd~tirlf 732 (733)
T KOG0650|consen 723 AGADGTIRLF 732 (733)
T ss_pred cCCCceEEee
Confidence 9999999998
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-20 Score=228.22 Aligned_cols=256 Identities=19% Similarity=0.328 Sum_probs=217.4
Q ss_pred CEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCc
Q 048801 298 TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAI 377 (1715)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i 377 (1715)
.+++.+..+-.++||+... +..|...|.++..-..+. .+++|+.|..+-+|.+.....+
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r---~~~~Gg~~~k~~L~~i~kp~~i------------ 63 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSR---SLVTGGEDEKVNLWAIGKPNAI------------ 63 (825)
T ss_pred cccceeeeeeccccccchh------hhhhhhhhceeeeeccce---eeccCCCceeeccccccCCchh------------
Confidence 3445555566677887543 445888888888755544 7899999999999987533221
Q ss_pred cCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEc
Q 048801 378 TGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS 457 (1715)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafs 457 (1715)
....+|...|.|+.|++...+|++|+.+|+|++||+... +.+++|.+|...+.+|.|+
T Consensus 64 -------------~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA---------k~vrtLtgh~~~~~sv~f~ 121 (825)
T KOG0267|consen 64 -------------TSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA---------KIVRTLTGHLLNITSVDFH 121 (825)
T ss_pred -------------heeeccCCcceeeecCcchhhhcccccCCceeeeehhhh---------hhhhhhhccccCcceeeec
Confidence 124567889999999999999999999999999999864 4577999999999999999
Q ss_pred cCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC
Q 048801 458 GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537 (1715)
Q Consensus 458 pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 537 (1715)
|-+ .++++|+.|+.+.+||++. .++
T Consensus 122 P~~--------------------------~~~a~gStdtd~~iwD~Rk-----------------------------~Gc 146 (825)
T KOG0267|consen 122 PYG--------------------------EFFASGSTDTDLKIWDIRK-----------------------------KGC 146 (825)
T ss_pred cce--------------------------EEeccccccccceehhhhc-----------------------------cCc
Confidence 976 6789999999999999983 244
Q ss_pred cccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 538 ~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
...+.+|...|.++.|+|+|++++.|+.|.+|+|||+..|+.+..|.+|.+.|.++.|+| ...++++|+.|++|++||+
T Consensus 147 ~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dl 225 (825)
T KOG0267|consen 147 SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDL 225 (825)
T ss_pred eeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCc-hhhhhccCCCCceeeeecc
Confidence 556667888999999999999999999999999999999999999999999999999999 7789999999999999999
Q ss_pred CCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCC
Q 048801 618 WEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG 652 (1715)
Q Consensus 618 ~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG 652 (1715)
.+.+.+.........|.+++|+|+|..+++|....
T Consensus 226 etfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 226 ETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 99998888887788999999999999998886643
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=194.31 Aligned_cols=282 Identities=14% Similarity=0.191 Sum_probs=209.4
Q ss_pred CCCCCceeeeeeccccCcccccCCCCcccccccccccCccccccc-e-eEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 048801 189 HMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKM-Q-NIKKLRGHRDAVYCAIFDRSGRFVITGSDDRL 266 (1715)
Q Consensus 189 ~~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-k-~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGt 266 (1715)
..+.|.|..|+|++.. ...++++.|+..+..|.++.. . .-+....|.++|.+++|+.||..+++|+.|+.
T Consensus 24 ~pP~DsIS~l~FSP~~--------~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQA--------DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ 95 (347)
T ss_pred CCcccchheeEecccc--------CceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCc
Confidence 3456888999998722 233445556655555555441 1 22455679999999999999999999999999
Q ss_pred EEEEeCCCCcEEEEecCCCCCeEEEEECCCCC--EEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceE
Q 048801 267 VKIWSMETAFCLASCRGHEGDITDLAVSSNNT--LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQ 344 (1715)
Q Consensus 267 IrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~--lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~ 344 (1715)
+++||+.+++ +..+..|.++|.++.|-+... .|+|||+|++|+.||.+...++.++. -...|+++..-.. .
T Consensus 96 ~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~~p-----m 168 (347)
T KOG0647|consen 96 AKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVLYP-----M 168 (347)
T ss_pred eEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhccCc-----e
Confidence 9999999994 466677999999999987655 89999999999999999999998887 5677888776543 7
Q ss_pred EEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEE
Q 048801 345 LLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVW 424 (1715)
Q Consensus 345 LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVW 424 (1715)
++.+..+..|.+|++..+...... ....-..+++|++...+....+.|+-+|.+.|.
T Consensus 169 ~vVata~r~i~vynL~n~~te~k~-----------------------~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq 225 (347)
T KOG0647|consen 169 AVVATAERHIAVYNLENPPTEFKR-----------------------IESPLKWQTRCVACFQDKDGFALGSIEGRVAIQ 225 (347)
T ss_pred eEEEecCCcEEEEEcCCCcchhhh-----------------------hcCcccceeeEEEEEecCCceEeeeecceEEEE
Confidence 888889999999999765422110 011125568999999999889999999999999
Q ss_pred eCCCCCccCCCCCceeeeeecCC---CCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEE
Q 048801 425 SACKSSVEDSEQPIHELDVLSGH---ENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW 501 (1715)
Q Consensus 425 Dl~t~~~~~~~~~~~~l~~l~gH---~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIW 501 (1715)
.+..+.. ...-..++.+.-..- --.|++|+|+|. +..|+|++.||++.+|
T Consensus 226 ~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~--------------------------hgtlvTaGsDGtf~FW 278 (347)
T KOG0647|consen 226 YIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPV--------------------------HGTLVTAGSDGTFSFW 278 (347)
T ss_pred ecCCCCc-cCceeEEEeccCCCCCCceEEecceEeecc--------------------------cceEEEecCCceEEEe
Confidence 9976432 111112222211111 125888999995 4799999999999999
Q ss_pred ecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe
Q 048801 502 IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI 564 (1715)
Q Consensus 502 Dl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs 564 (1715)
|-+.+. .+.....+..+|+|.+|+.+|.++|-+.
T Consensus 279 Dkdar~-----------------------------kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 279 DKDART-----------------------------KLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred cchhhh-----------------------------hhhccCcCCCccceeEecCCCCEEEEEe
Confidence 977532 2233455788999999999999988654
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.2e-19 Score=204.10 Aligned_cols=288 Identities=11% Similarity=0.167 Sum_probs=225.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC--CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC
Q 048801 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPD--GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY 361 (1715)
Q Consensus 284 Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t--g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t 361 (1715)
..+.|++|.|+|...+|++|+.|++++||.++. ...+..+.-...+|.+.+|.|+|.. .+++++....++.||+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~--~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHS--VIFTSGRRKYLYSYDLET 289 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCce--EEEecccceEEEEeeccc
Confidence 356899999999999999999999999998853 3456666666789999999999874 789999999999999988
Q ss_pred CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceee
Q 048801 362 SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHEL 441 (1715)
Q Consensus 362 g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l 441 (1715)
.+..+.-... | .....+....+++++++|+..+..|.|.+....++.. +
T Consensus 290 ak~~k~~~~~-------g---------------~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el---------i 338 (514)
T KOG2055|consen 290 AKVTKLKPPY-------G---------------VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL---------I 338 (514)
T ss_pred cccccccCCC-------C---------------cccchhheeEecCCCCeEEEcccCceEEeehhhhhhh---------h
Confidence 7754321110 0 0123467888999999999999999999999877542 2
Q ss_pred eeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccc
Q 048801 442 DVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHL 521 (1715)
Q Consensus 442 ~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l 521 (1715)
..+. -.+.|..++|+.++ ..|++++.+|.|.+||++...+.... ..
T Consensus 339 ~s~K-ieG~v~~~~fsSds--------------------------k~l~~~~~~GeV~v~nl~~~~~~~rf---~D---- 384 (514)
T KOG2055|consen 339 TSFK-IEGVVSDFTFSSDS--------------------------KELLASGGTGEVYVWNLRQNSCLHRF---VD---- 384 (514)
T ss_pred heee-eccEEeeEEEecCC--------------------------cEEEEEcCCceEEEEecCCcceEEEE---ee----
Confidence 2222 35688999999776 78888889999999999975322211 00
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC------CceEEEEecCCCCeEEEEE
Q 048801 522 KVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD------GSLVHSLTGHSASSYVLDV 595 (1715)
Q Consensus 522 ~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s------g~~l~tL~gH~~~V~sLaf 595 (1715)
...-.-+.+|.|++|.|||+|+..|.|.|||..+ .+++..+..-...|++|.|
T Consensus 385 ---------------------~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~F 443 (514)
T KOG2055|consen 385 ---------------------DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQF 443 (514)
T ss_pred ---------------------cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeee
Confidence 0011235688899999999999999999999654 5677777777788999999
Q ss_pred ccCCCcEEEEEe--CCCcEEEEECCCCceEEEEEccc---ceEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 596 HPFNPRIAMSAG--YDGRTIVWDIWEGTPIRIYEIGR---FKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 596 SP~dg~lLaSgs--~DGtI~VWDl~tgk~l~tl~~h~---~~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
++ +..+||.++ .+..+++-.+.+......+.... +.|+|++|||.|.+||+|..+|.+.+|.+.
T Consensus 444 n~-d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 444 NH-DAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred Cc-chhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99 777877765 56789999998877776665433 358899999999999999999999999874
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=202.60 Aligned_cols=287 Identities=10% Similarity=0.140 Sum_probs=227.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCcEEEEecCCCCCeEEEEECCCCC-EEEEEeCCCeeEEEECCCCCc
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSME--TAFCLASCRGHEGDITDLAVSSNNT-LVASASNDFVIRVWRLPDGLP 319 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~--tgk~l~tL~gHs~~VtsLafSpDg~-lLASGS~DGtIrVWDl~tg~~ 319 (1715)
.+.|+||.|+|.-..|++|+.||+++||.++ +...++.+.--..+|.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4689999999999999999999999999886 3356677766788999999999998 899999999999999988764
Q ss_pred e--EEEeCCC-CCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC
Q 048801 320 I--SVLRGHT-GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396 (1715)
Q Consensus 320 l--~~L~gH~-~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h 396 (1715)
. ..+.++. ..+....++++++ +|+..|..|.|.+....+++++..+..
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~---fia~~G~~G~I~lLhakT~eli~s~Ki-------------------------- 343 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSN---FIAIAGNNGHIHLLHAKTKELITSFKI-------------------------- 343 (514)
T ss_pred ccccCCCCcccchhheeEecCCCC---eEEEcccCceEEeehhhhhhhhheeee--------------------------
Confidence 3 3334444 3466778899998 899999999999999999988776654
Q ss_pred CcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCe--eEEEEccCccccccccccccccc
Q 048801 397 SHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDV--NYVQFSGCAVASRSAMSDAFKEE 474 (1715)
Q Consensus 397 ~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V--~sLafspdg~as~~~~~~~~~~~ 474 (1715)
.+.|..++|+.+|+.|++.+.+|.|.+||++... ++..+.. .+.| ++++.+.++
T Consensus 344 eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~---------~~~rf~D-~G~v~gts~~~S~ng-------------- 399 (514)
T KOG2055|consen 344 EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNS---------CLHRFVD-DGSVHGTSLCISLNG-------------- 399 (514)
T ss_pred ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcc---------eEEEEee-cCccceeeeeecCCC--------------
Confidence 4458999999999999999999999999998743 3333332 2222 445555654
Q ss_pred ccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC
Q 048801 475 NVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS 554 (1715)
Q Consensus 475 ~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS 554 (1715)
.+|++|+..|.|.|||..+.. ......++..+..-...|+.++|+
T Consensus 400 ------------~ylA~GS~~GiVNIYd~~s~~-----------------------~s~~PkPik~~dNLtt~Itsl~Fn 444 (514)
T KOG2055|consen 400 ------------SYLATGSDSGIVNIYDGNSCF-----------------------ASTNPKPIKTVDNLTTAITSLQFN 444 (514)
T ss_pred ------------ceEEeccCcceEEEeccchhh-----------------------ccCCCCchhhhhhhheeeeeeeeC
Confidence 799999999999999977522 111234556666667789999999
Q ss_pred CCCCEEEEEec--CCeEEEEECCCCceEEEEec---CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 555 LDNRFVLAAIM--DCRICVWNAVDGSLVHSLTG---HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 555 PDG~~LaTgs~--DGtI~IWDl~sg~~l~tL~g---H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
+|+++||.++. ...+++-.+.+......+.. .-+.|+||+|+| ++.+||.|..+|.|.+|.+.
T Consensus 445 ~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 445 HDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC-CCceEEeecCCCceeeEeec
Confidence 99999998875 56788888877666555543 335689999999 77788999999999999874
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-20 Score=225.72 Aligned_cols=274 Identities=18% Similarity=0.260 Sum_probs=199.5
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEE
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVr 355 (1715)
+.+..|.||.++|+|+.|...|.+|++|+.|..|+||..+++.++..+.||.+.|+.++.+.++. .+++++.|..|+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~---~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNT---MIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhh---hhhhcccCceEE
Confidence 44556789999999999999999999999999999999999999999999999999999998876 789999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE 435 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~ 435 (1715)
+|.+.++..+.. ..+|.+.|++++|+|-. +.+.||++++||.+-.......
T Consensus 258 vWrl~~~~pvsv-------------------------LrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~p 308 (1113)
T KOG0644|consen 258 VWRLPDGAPVSV-------------------------LRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVP 308 (1113)
T ss_pred EEecCCCchHHH-------------------------HhccccceeeeccCccc----cCCCCCceEeccccccccccCC
Confidence 999987764433 35678889999999965 6678999999998721100000
Q ss_pred CCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccc
Q 048801 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW 515 (1715)
Q Consensus 436 ~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~ 515 (1715)
.| ... ....-+.++.|...+ ..++|++.|+....|.+.
T Consensus 309 rp---~~~--~~~~~~~s~~~~~~~--------------------------~~f~Tgs~d~ea~n~e~~----------- 346 (1113)
T KOG0644|consen 309 RP---LKF--TEKDLVDSILFENNG--------------------------DRFLTGSRDGEARNHEFE----------- 346 (1113)
T ss_pred CC---CCc--ccccceeeeeccccc--------------------------cccccccCCcccccchhh-----------
Confidence 00 000 011233333333332 455566665555555322
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEE
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDV 595 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLaf 595 (1715)
+++|...+-.+++++.
T Consensus 347 ----------------------------------~l~~~~~~lif~t~ss------------------------------ 362 (1113)
T KOG0644|consen 347 ----------------------------------QLAWRSNLLIFVTRSS------------------------------ 362 (1113)
T ss_pred ----------------------------------HhhhhccceEEEeccc------------------------------
Confidence 1222222222222222
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCcccccc------
Q 048801 596 HPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIV-LSDDVGQIYLLNTGQGESQKDA------ 668 (1715)
Q Consensus 596 SP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LA-sgs~DG~I~IWdl~tGe~~k~~------ 668 (1715)
+-..+.+++-.+..+++|++.+|..++.+.+|...+..+.|+|-...++ +++.||.+.|||+..|..++..
T Consensus 363 --d~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~k 440 (1113)
T KOG0644|consen 363 --DLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGK 440 (1113)
T ss_pred --cccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccce
Confidence 1224556677788899999999999999999999999999999887777 8899999999999999776432
Q ss_pred ccceeecCCCccEEEc-CCCCe
Q 048801 669 KYDQFFLGDYRPLIRD-SLGNV 689 (1715)
Q Consensus 669 ~~~~~fs~D~r~L~~d-~~g~v 689 (1715)
..+..|++||..++.. .+|..
T Consensus 441 l~d~kFSqdgts~~lsd~hgql 462 (1113)
T KOG0644|consen 441 LVDGKFSQDGTSIALSDDHGQL 462 (1113)
T ss_pred eeccccCCCCceEecCCCCCce
Confidence 2345799999988864 44554
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-20 Score=225.96 Aligned_cols=239 Identities=23% Similarity=0.393 Sum_probs=207.0
Q ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC
Q 048801 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD 316 (1715)
Q Consensus 237 ~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t 316 (1715)
+.+..|...|.|+..-..++.+++|+.|..+-+|.+..-..+..|.+|..+|.+|.|+++..+|++|+.+|+|+|||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 34668999999999988899999999999999999988778888999999999999999999999999999999999999
Q ss_pred CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC
Q 048801 317 GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396 (1715)
Q Consensus 317 g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h 396 (1715)
++.+++|.||...+..+.|+|-+. ++++|+.|+.+.+||++...+...+ ..|
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~~---~~a~gStdtd~~iwD~Rk~Gc~~~~-------------------------~s~ 153 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYGE---FFASGSTDTDLKIWDIRKKGCSHTY-------------------------KSH 153 (825)
T ss_pred hhhhhhhhccccCcceeeeccceE---EeccccccccceehhhhccCceeee-------------------------cCC
Confidence 999999999999999999999987 7899999999999999855443332 335
Q ss_pred CcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccc
Q 048801 397 SHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476 (1715)
Q Consensus 397 ~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~ 476 (1715)
...|.++.|+|+|++++.|+.|..++|||+..++ .+..+..|.+.|.++.|+|..
T Consensus 154 ~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk---------~~~ef~~~e~~v~sle~hp~e---------------- 208 (825)
T KOG0267|consen 154 TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK---------LSKEFKSHEGKVQSLEFHPLE---------------- 208 (825)
T ss_pred cceeEEEeecCCCceeeccCCcceeeeecccccc---------cccccccccccccccccCchh----------------
Confidence 6679999999999999999999999999998754 367788999999999999864
Q ss_pred ccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC
Q 048801 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD 556 (1715)
Q Consensus 477 ~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD 556 (1715)
-.+++|+.|+++++||+++-..+.. ......+|.+++|+|+
T Consensus 209 ----------~Lla~Gs~d~tv~f~dletfe~I~s-----------------------------~~~~~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 209 ----------VLLAPGSSDRTVRFWDLETFEVISS-----------------------------GKPETDGVRSLAFNPD 249 (825)
T ss_pred ----------hhhccCCCCceeeeeccceeEEeec-----------------------------cCCccCCceeeeecCC
Confidence 4788999999999999986332211 1223567999999999
Q ss_pred CCEEEEEecCC
Q 048801 557 NRFVLAAIMDC 567 (1715)
Q Consensus 557 G~~LaTgs~DG 567 (1715)
+..+++|....
T Consensus 250 ~~~~~~G~q~s 260 (825)
T KOG0267|consen 250 GKIVLSGEQIS 260 (825)
T ss_pred ceeeecCchhh
Confidence 99999887654
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-19 Score=194.15 Aligned_cols=255 Identities=20% Similarity=0.241 Sum_probs=202.8
Q ss_pred eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEE
Q 048801 324 RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCC 403 (1715)
Q Consensus 324 ~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsl 403 (1715)
..|...|..+...--+. .|++++.|++|+|+.++.+... .....+.+|.++|+.+
T Consensus 8 t~H~D~IHda~lDyygk---rlATcsSD~tVkIf~v~~n~~s----------------------~ll~~L~Gh~GPVwqv 62 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGK---RLATCSSDGTVKIFEVRNNGQS----------------------KLLAELTGHSGPVWKV 62 (299)
T ss_pred hhhhhhhhHhhhhhhcc---eeeeecCCccEEEEEEcCCCCc----------------------eeeeEecCCCCCeeEE
Confidence 46888888877766666 8999999999999998765431 1223356789999999
Q ss_pred EEcc--CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccC
Q 048801 404 AYNA--NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 404 afSp--dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
+|.. -|.+||+++.||.|.||.-.++. .........|...|++++|.|..+
T Consensus 63 ~wahPk~G~iLAScsYDgkVIiWke~~g~-------w~k~~e~~~h~~SVNsV~waphey-------------------- 115 (299)
T KOG1332|consen 63 AWAHPKFGTILASCSYDGKVIIWKEENGR-------WTKAYEHAAHSASVNSVAWAPHEY-------------------- 115 (299)
T ss_pred eecccccCcEeeEeecCceEEEEecCCCc-------hhhhhhhhhhcccceeeccccccc--------------------
Confidence 9976 79999999999999999987653 445667789999999999999863
Q ss_pred CcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC---C-
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD---N- 557 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD---G- 557 (1715)
+-.|++++.||.|.|.++++. +.|. .......|.-+|++++|.|- |
T Consensus 116 ----gl~LacasSDG~vsvl~~~~~------g~w~--------------------t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 116 ----GLLLACASSDGKVSVLTYDSS------GGWT--------------------TSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ----ceEEEEeeCCCcEEEEEEcCC------CCcc--------------------chhhhhccccccceeeecCcCCCcc
Confidence 358999999999999988752 1111 11234568889999999985 5
Q ss_pred ----------CEEEEEecCCeEEEEECCCCc--eEEEEecCCCCeEEEEEccCCC---cEEEEEeCCCcEEEEECCCC--
Q 048801 558 ----------RFVLAAIMDCRICVWNAVDGS--LVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTIVWDIWEG-- 620 (1715)
Q Consensus 558 ----------~~LaTgs~DGtI~IWDl~sg~--~l~tL~gH~~~V~sLafSP~dg---~lLaSgs~DGtI~VWDl~tg-- 620 (1715)
+.|++|+.|..|+||+..++. .-.+|.+|.+.|+.++|.|.-+ ..||+++.||+|.||.....
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 569999999999999998863 3456899999999999999543 58999999999999986521
Q ss_pred c-eEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 621 T-PIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 621 k-~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
. ....+......+..+.||..|..|++++.|+.|.+|.-.
T Consensus 246 ~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 246 PWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 1 122233345679999999999999999999999999743
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-16 Score=188.13 Aligned_cols=333 Identities=28% Similarity=0.501 Sum_probs=258.9
Q ss_pred EEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-EEEEecCCCC-CeEEEEE-CCCCC-EEEEEeC-CCeeEEE
Q 048801 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF-CLASCRGHEG-DITDLAV-SSNNT-LVASASN-DFVIRVW 312 (1715)
Q Consensus 238 ~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk-~l~tL~gHs~-~VtsLaf-SpDg~-lLASGS~-DGtIrVW 312 (1715)
.+.+|...|.++.|.+.+..++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ ++++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 567899999999999999999999999999999998887 7777777544 7888887 88887 5555444 9999999
Q ss_pred ECCC-CCceEEEeCCCCCeEEEEecCCCCcceEEEEecC-CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCC
Q 048801 313 RLPD-GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD-DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPS 390 (1715)
Q Consensus 313 Dl~t-g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~-DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~ 390 (1715)
++.. ......+..|...|.+++|+|++. ++++++. |+.+++|++..+..+..+
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 194 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGK---LLASGSSLDGTIKLWDLRTGKPLSTL---------------------- 194 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCC---EEEecCCCCCceEEEEcCCCceEEee----------------------
Confidence 9988 788888999999999999999997 6777775 999999999864433222
Q ss_pred CCCCCCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeee-eecCCCCCeeEEEEccCccccccccc
Q 048801 391 SSNGLQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELD-VLSGHENDVNYVQFSGCAVASRSAMS 468 (1715)
Q Consensus 391 ~~~~~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~-~l~gH~~~V~sLafspdg~as~~~~~ 468 (1715)
..|...|.+++|+|++. .+++++.|+.|++||...+ ..+. .+.+|...+ ...|++++
T Consensus 195 ---~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~---------~~~~~~~~~~~~~~-~~~~~~~~-------- 253 (466)
T COG2319 195 ---AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG---------KLLRSTLSGHSDSV-VSSFSPDG-------- 253 (466)
T ss_pred ---ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC---------cEEeeecCCCCcce-eEeECCCC--------
Confidence 12577899999999998 5555589999999987643 2233 577777775 44788764
Q ss_pred ccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCe
Q 048801 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548 (1715)
Q Consensus 469 ~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V 548 (1715)
..+++++.|+.+++|++..... ....+..|...|
T Consensus 254 ------------------~~~~~~~~d~~~~~~~~~~~~~----------------------------~~~~~~~~~~~v 287 (466)
T COG2319 254 ------------------SLLASGSSDGTIRLWDLRSSSS----------------------------LLRTLSGHSSSV 287 (466)
T ss_pred ------------------CEEEEecCCCcEEEeeecCCCc----------------------------EEEEEecCCccE
Confidence 5788999999999999985331 011114557789
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe--cCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCCCceEEE
Q 048801 549 NMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT--GHSASSYVLDVHPFN-PRIAMSAGYDGRTIVWDIWEGTPIRI 625 (1715)
Q Consensus 549 tslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~--gH~~~V~sLafSP~d-g~lLaSgs~DGtI~VWDl~tgk~l~t 625 (1715)
.++.|+|++..+++++.|+.+.+|+..+........ .|...+..+.| +.+ ..++.++..|+.+.+|++........
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 366 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCceeEE
Confidence 999999999999989999999999999888777776 88888999999 534 34444446889999999988773333
Q ss_pred EEcccceEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCccc
Q 048801 626 YEIGRFKLVDGKFSPDGTSIVL-SDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 626 l~~h~~~V~svafSPDG~~LAs-gs~DG~I~IWdl~tGe~~ 665 (1715)
... ...+..+.+++ ...++. +..++.+.+|++......
T Consensus 367 ~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (466)
T COG2319 367 LEG-HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLL 405 (466)
T ss_pred ecC-CceEEEEEECC-CCCEEEEecCCCceEEEecccCeee
Confidence 332 22378899999 544444 688999999999877654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-16 Score=188.80 Aligned_cols=336 Identities=29% Similarity=0.482 Sum_probs=257.9
Q ss_pred eEEEEcCCCC-CeEEEEE-cCCCC-EEEEEeC-CCcEEEEeCCC-CcEEEEecCCCCCeEEEEECCCCCEEEEEeC-CCe
Q 048801 235 NIKKLRGHRD-AVYCAIF-DRSGR-FVITGSD-DRLVKIWSMET-AFCLASCRGHEGDITDLAVSSNNTLVASASN-DFV 308 (1715)
Q Consensus 235 ~l~~L~GH~~-~Vt~Vaf-SpDG~-~LaTGS~-DGtIrIWDl~t-gk~l~tL~gHs~~VtsLafSpDg~lLASGS~-DGt 308 (1715)
.+..+.++.. .+..+.+ ++++. +++..+. |+.+.+|+... ......+.+|...|.+++|+|++.++++++. |+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 179 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCc
Confidence 6667777554 7888877 88887 5555444 99999999998 7888999999999999999999999999886 999
Q ss_pred eEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCC
Q 048801 309 IRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 309 IrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
+++|++..+..+..+.+|...|.+++|+|++. ..+++++.|+.|++||...+.....
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~d~~i~~wd~~~~~~~~~--------------------- 236 (466)
T COG2319 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG--LLIASGSSDGTIRLWDLSTGKLLRS--------------------- 236 (466)
T ss_pred eEEEEcCCCceEEeeccCCCceEEEEEcCCcc--eEEEEecCCCcEEEEECCCCcEEee---------------------
Confidence 99999999999999999999999999998876 2455569999999998774443321
Q ss_pred CCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccc
Q 048801 389 PSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~ 468 (1715)
....|...+ ...|++++.++++++.|+.+++|++..... .+..+.+|...|.++.|.|++
T Consensus 237 ---~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~-------- 296 (466)
T COG2319 237 ---TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--------LLRTLSGHSSSVLSVAFSPDG-------- 296 (466)
T ss_pred ---ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--------EEEEEecCCccEEEEEECCCC--------
Confidence 011222332 228999998899999999999999976421 233336788999999999854
Q ss_pred ccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCe
Q 048801 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548 (1715)
Q Consensus 469 ~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V 548 (1715)
..+++++.|+.+.+|+..+....... ....|...+
T Consensus 297 ------------------~~~~~~~~d~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~ 331 (466)
T COG2319 297 ------------------KLLASGSSDGTVRLWDLETGKLLSSL---------------------------TLKGHEGPV 331 (466)
T ss_pred ------------------CEEEEeeCCCcEEEEEcCCCceEEEe---------------------------eecccCCce
Confidence 56777888899999987753311110 022445568
Q ss_pred eEEEeCCCCCEEEEE-ecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEE-EeCCCcEEEEECCCCceEEEE
Q 048801 549 NMIVWSLDNRFVLAA-IMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMS-AGYDGRTIVWDIWEGTPIRIY 626 (1715)
Q Consensus 549 tslafSPDG~~LaTg-s~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaS-gs~DGtI~VWDl~tgk~l~tl 626 (1715)
..+.|.+++..++.+ ..|+.+.+|++.............. +..+.+++ + ..+++ +..++.+.+|+..........
T Consensus 332 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (466)
T COG2319 332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNL 408 (466)
T ss_pred EEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeec
Confidence 888884343566655 6789999999988873333333322 88999998 7 55554 789999999999988888777
Q ss_pred EcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 627 EIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 627 ~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
..+...+..+.+++++..++.++.++.+.+|++.+
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 409 DGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 64436888999999999999999999999999977
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-18 Score=211.78 Aligned_cols=274 Identities=14% Similarity=0.205 Sum_probs=212.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC
Q 048801 240 RGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA-FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL 318 (1715)
Q Consensus 240 ~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg-k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~ 318 (1715)
.+|...-+.|+|.|+|.+|+|++.||.|++|+...- ..-.++..+...|.+++.. +.+|++|+.+++|.+|.+..+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 479999999999999999999999999999997655 3334444477788888764 5599999999999999999988
Q ss_pred ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCc
Q 048801 319 PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH 398 (1715)
Q Consensus 319 ~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~ 398 (1715)
.-..|...+-++.+++|+.+|. +++.||.|-.|++-++.+...... ..+|..
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~---~iaagsdD~~vK~~~~~D~s~~~~-------------------------lrgh~a 139 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGK---MIAAGSDDTAVKLLNLDDSSQEKV-------------------------LRGHDA 139 (933)
T ss_pred ccceeeeeeccceEEEEecCCc---EEEeecCceeEEEEeccccchhee-------------------------ecccCC
Confidence 7666666778899999999998 899999999999999876553332 345788
Q ss_pred ceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCC-CCCeeEEEEccCcccccccccccccccccc
Q 048801 399 QILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGH-ENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 399 ~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH-~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
+|.++.|+|++.+||+.+.||.|+||++.++.+......... ....- ...+..++|+|++
T Consensus 140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k--~n~~~~s~i~~~~aW~Pk~----------------- 200 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDK--DNEFILSRICTRLAWHPKG----------------- 200 (933)
T ss_pred ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCc--cccccccceeeeeeecCCC-----------------
Confidence 899999999999999999999999999987654221111100 11111 3456778999986
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
..|+..+.|+.|++|+..+.. ..+.+. ...+...+.+++|+|+|
T Consensus 201 ---------g~la~~~~d~~Vkvy~r~~we---------~~f~Lr------------------~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 201 ---------GTLAVPPVDNTVKVYSRKGWE---------LQFKLR------------------DKLSSSKFSDLQWSPNG 244 (933)
T ss_pred ---------CeEEeeccCCeEEEEccCCce---------eheeec------------------ccccccceEEEEEcCCC
Confidence 578888899999999887533 333221 12234448999999999
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcE
Q 048801 558 RFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRI 602 (1715)
Q Consensus 558 ~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~l 602 (1715)
.|||+++.||.|.|||+.+-.. .-....|.+++|.|+.+.+
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred cEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCee
Confidence 9999999999999999987221 2235679999999965543
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=193.17 Aligned_cols=294 Identities=16% Similarity=0.181 Sum_probs=212.8
Q ss_pred eEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcce
Q 048801 288 ITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPR 367 (1715)
Q Consensus 288 VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~ 367 (1715)
-.|+.|++.|.+||+|+.||.|.|||+.|...-+.+.+|..+|++++|+++|. .|++++.|..|.+||+..|.++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr---~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGR---KLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCC---EeeeecCCceeEEEeccCCCceeE
Confidence 68999999999999999999999999999999999999999999999999998 899999999999999999998887
Q ss_pred ecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecC
Q 048801 368 IYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG 446 (1715)
Q Consensus 368 i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g 446 (1715)
+.+ ...|+.+.|+|... .+++.-.+..-.+.++..+. +. .+..
T Consensus 103 irf--------------------------~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--------h~--~Lp~ 146 (405)
T KOG1273|consen 103 IRF--------------------------DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--------HS--VLPK 146 (405)
T ss_pred EEc--------------------------cCccceeeeccccCCeEEEEEecCCcEEEEecCCc--------ee--eccC
Confidence 766 34488889998543 23322223334444443211 00 0100
Q ss_pred C-CC----CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccc
Q 048801 447 H-EN----DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHL 521 (1715)
Q Consensus 447 H-~~----~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l 521 (1715)
. .+ .-.+..|.+. +++|++|...|.+.+++..+-+++...
T Consensus 147 d~d~dln~sas~~~fdr~--------------------------g~yIitGtsKGkllv~~a~t~e~vas~--------- 191 (405)
T KOG1273|consen 147 DDDGDLNSSASHGVFDRR--------------------------GKYIITGTSKGKLLVYDAETLECVASF--------- 191 (405)
T ss_pred CCccccccccccccccCC--------------------------CCEEEEecCcceEEEEecchheeeeee---------
Confidence 0 00 0111123333 489999999999999999875433221
Q ss_pred cCCCCCCCCCCCCCCCcccccCC-CCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC-------c--eEEEEec--CCCC
Q 048801 522 KVPPPPLPPQPPRGGPRQRLLPT-PRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG-------S--LVHSLTG--HSAS 589 (1715)
Q Consensus 522 ~~~~~~~~~~~~~g~~~~~l~~h-~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg-------~--~l~tL~g--H~~~ 589 (1715)
... ...|..+.++..|++|++-+.|..|+.|++..- + +.+.+.. ....
T Consensus 192 --------------------rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~ 251 (405)
T KOG1273|consen 192 --------------------RITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ 251 (405)
T ss_pred --------------------eechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence 111 246888999999999999999999999998631 1 1122211 1122
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEccc-ceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccccc
Q 048801 590 SYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGR-FKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDA 668 (1715)
Q Consensus 590 V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~-~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~ 668 (1715)
-.+++|+.++..++++...-..++||.-..|.+++.+.+.. ....++.|+|-...|++- ..|.++||....-+
T Consensus 252 Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e----- 325 (405)
T KOG1273|consen 252 WKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE----- 325 (405)
T ss_pred hhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeeccc-----
Confidence 35678888444444444456789999999999999999877 457799999998888877 77999999975432
Q ss_pred ccceeecCCCccEE
Q 048801 669 KYDQFFLGDYRPLI 682 (1715)
Q Consensus 669 ~~~~~fs~D~r~L~ 682 (1715)
.-.+|.||++.|.
T Consensus 326 -nwsafAPdFqele 338 (405)
T KOG1273|consen 326 -NWSAFAPDFQELE 338 (405)
T ss_pred -chhhcCchHHHHH
Confidence 2346888888774
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=193.86 Aligned_cols=308 Identities=17% Similarity=0.212 Sum_probs=224.9
Q ss_pred ccceeEEEEcCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEeCCCC----cEEEEecCCCCCeEEEEECCC-CCEEEEE
Q 048801 231 QKMQNIKKLRGHRDAVYCAIFDRSG--RFVITGSDDRLVKIWSMETA----FCLASCRGHEGDITDLAVSSN-NTLVASA 303 (1715)
Q Consensus 231 ~~~k~l~~L~GH~~~Vt~VafSpDG--~~LaTGS~DGtIrIWDl~tg----k~l~tL~gHs~~VtsLafSpD-g~lLASG 303 (1715)
.........+-|.+.|+|++|+|.. ++||+|..-|.|-+||+.+. .-+..+..|.++|.+|.|+|. ...+++.
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence 3455667788899999999999965 48888989999999999532 335567889999999999995 4688999
Q ss_pred eCCCeeEEEECCCCCce--EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCcc
Q 048801 304 SNDFVIRVWRLPDGLPI--SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKS 381 (1715)
Q Consensus 304 S~DGtIrVWDl~tg~~l--~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~ 381 (1715)
|.||+|++-|++.+..- ..+......+..+.|+.+.. .++.+..=|.+.+||++++...
T Consensus 254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~---~vl~~~~~G~f~~iD~R~~~s~---------------- 314 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESR---SVLFGDNVGNFNVIDLRTDGSE---------------- 314 (498)
T ss_pred ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCc---cEEEeecccceEEEEeecCCcc----------------
Confidence 99999999999876443 33333455678888988877 5677777779999999876521
Q ss_pred CCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCc
Q 048801 382 NVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 382 ~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg 460 (1715)
......|...|.+++++|-. .+|||++.|++++|||++....... ++-....|...|.+..|+|.+
T Consensus 315 --------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----p~lst~~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 315 --------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----PFLSTLPHRRSVNSAYFSPSG 381 (498)
T ss_pred --------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----cceecccccceeeeeEEcCCC
Confidence 11123456689999999954 6899999999999999986432111 244556799999999999987
Q ss_pred ccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
..|+|.+.|..|+|||..- ++.+... .. .+..
T Consensus 382 --------------------------gtl~TT~~D~~IRv~dss~------~sa~~~p-------~~---------~I~H 413 (498)
T KOG4328|consen 382 --------------------------GTLLTTCQDNEIRVFDSSC------ISAKDEP-------LG---------TIPH 413 (498)
T ss_pred --------------------------CceEeeccCCceEEeeccc------ccccCCc-------cc---------eeec
Confidence 4599999999999999741 1111100 00 0000
Q ss_pred ccCCCC--CeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCC-CeEE-EEEccCCCcEEEEEeCCCcEEEEE
Q 048801 541 LLPTPR--GVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSA-SSYV-LDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 541 l~~h~~--~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~-~V~s-LafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
-..+.. ..-..+|.|+..+|++|-.-..|-|+|...++.+..+..... .|.+ ..|||.+..+++.++..|.|+||-
T Consensus 414 n~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 414 NNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 000001 133458999999999999999999999998888888754433 4544 479996555776667788999986
Q ss_pred CC
Q 048801 617 IW 618 (1715)
Q Consensus 617 l~ 618 (1715)
-.
T Consensus 494 ~k 495 (498)
T KOG4328|consen 494 NK 495 (498)
T ss_pred cC
Confidence 43
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-18 Score=213.19 Aligned_cols=244 Identities=20% Similarity=0.362 Sum_probs=195.2
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEeCCC---CcEEEEecCCCCCeEEEEECCC-CCEEEEEeCCCeeEEEECCCCCce
Q 048801 246 VYCAIFDR-SGRFVITGSDDRLVKIWSMET---AFCLASCRGHEGDITDLAVSSN-NTLVASASNDFVIRVWRLPDGLPI 320 (1715)
Q Consensus 246 Vt~VafSp-DG~~LaTGS~DGtIrIWDl~t---gk~l~tL~gHs~~VtsLafSpD-g~lLASGS~DGtIrVWDl~tg~~l 320 (1715)
+..|.|.. +.++|||++..|.|.+||+.. .+++..|..|...|+++.|++. -.+|++|+.||+|++||++.....
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 33455653 567999999999999999986 5677788999999999999984 578999999999999999999999
Q ss_pred EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 321 SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 321 ~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
.++.+....|..+.|+|...+ .++++...|.|++||++.... .......|.+.|
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~--~F~s~~dsG~lqlWDlRqp~r------------------------~~~k~~AH~GpV 223 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGN--KFASIHDSGYLQLWDLRQPDR------------------------CEKKLTAHNGPV 223 (839)
T ss_pred ccccccchhhhceeeccCCCc--eEEEecCCceEEEeeccCchh------------------------HHHHhhcccCce
Confidence 999999999999999997654 899999999999999985432 122345688999
Q ss_pred eEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccccc
Q 048801 401 LCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFK 480 (1715)
Q Consensus 401 tslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~ 480 (1715)
.|+.|+|++.+||||+.|+.|+||++.+... .+...+. ...+|.+|.|-|.-
T Consensus 224 ~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~----~~~~tIn----Tiapv~rVkWRP~~-------------------- 275 (839)
T KOG0269|consen 224 LCLNWHPNREWLATGGRDKMVKIWDMTDSRA----KPKHTIN----TIAPVGRVKWRPAR-------------------- 275 (839)
T ss_pred EEEeecCCCceeeecCCCccEEEEeccCCCc----cceeEEe----ecceeeeeeeccCc--------------------
Confidence 9999999999999999999999999986432 1222222 24589999999975
Q ss_pred CCcccCceEEEEc--CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CC
Q 048801 481 NSWFCHDNIVTCS--RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DN 557 (1715)
Q Consensus 481 ~s~~~~~~LaSgS--~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG 557 (1715)
...|++++ .|-.|+|||++.. .-+...+..|...++.++|.. |-
T Consensus 276 -----~~hLAtcsmv~dtsV~VWDvrRP----------------------------YIP~~t~~eH~~~vt~i~W~~~d~ 322 (839)
T KOG0269|consen 276 -----SYHLATCSMVVDTSVHVWDVRRP----------------------------YIPYATFLEHTDSVTGIAWDSGDR 322 (839)
T ss_pred -----cchhhhhhccccceEEEEeeccc----------------------------cccceeeeccCccccceeccCCCc
Confidence 35777776 5789999999841 124456778899999999975 55
Q ss_pred CEEEEEecCCeEEEEECCC
Q 048801 558 RFVLAAIMDCRICVWNAVD 576 (1715)
Q Consensus 558 ~~LaTgs~DGtI~IWDl~s 576 (1715)
..|.+++.||+|..-.+.+
T Consensus 323 ~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 323 INLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred eeeEeecCccHHHHhhhhc
Confidence 6778888888876554444
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-17 Score=184.17 Aligned_cols=272 Identities=16% Similarity=0.199 Sum_probs=206.0
Q ss_pred eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEE
Q 048801 324 RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCC 403 (1715)
Q Consensus 324 ~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsl 403 (1715)
.+|..-|+++.|.+.|+ .+++|+.|++|+|||.....-.. ........|.+.|..+
T Consensus 10 s~h~DlihdVs~D~~GR---RmAtCSsDq~vkI~d~~~~s~~W---------------------~~Ts~Wrah~~Si~rV 65 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGR---RMATCSSDQTVKIWDSTSDSGTW---------------------SCTSSWRAHDGSIWRV 65 (361)
T ss_pred cCCcceeeeeeecccCc---eeeeccCCCcEEEEeccCCCCce---------------------EEeeeEEecCCcEEEE
Confidence 47888999999999998 89999999999999975443211 1123345678889999
Q ss_pred EEcc--CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccC
Q 048801 404 AYNA--NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 404 afSp--dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
.|.+ -|+.+|+++.|+++.||.-................++......|+.|.|.|...
T Consensus 66 ~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hl-------------------- 125 (361)
T KOG2445|consen 66 VWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHL-------------------- 125 (361)
T ss_pred EecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhc--------------------
Confidence 9966 589999999999999998754333333344556677888889999999999642
Q ss_pred CcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC---CCC
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL---DNR 558 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP---DG~ 558 (1715)
+-.+++++.||.++||+.-. ...+..|.....+..-.. ....+.....|+.|+| ...
T Consensus 126 ----GLklA~~~aDG~lRIYEA~d---p~nLs~W~Lq~Ei~~~~~-------------pp~~~~~~~~CvsWn~sr~~~p 185 (361)
T KOG2445|consen 126 ----GLKLAAASADGILRIYEAPD---PMNLSQWTLQHEIQNVID-------------PPGKNKQPCFCVSWNPSRMHEP 185 (361)
T ss_pred ----ceEEEEeccCcEEEEEecCC---ccccccchhhhhhhhccC-------------CcccccCcceEEeeccccccCc
Confidence 24799999999999998764 233445554433321111 1122445678899987 345
Q ss_pred EEEEEecC-----CeEEEEECCCCc----eEEEEecCCCCeEEEEEccCCC---cEEEEEeCCCcEEEEECCCC------
Q 048801 559 FVLAAIMD-----CRICVWNAVDGS----LVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTIVWDIWEG------ 620 (1715)
Q Consensus 559 ~LaTgs~D-----GtI~IWDl~sg~----~l~tL~gH~~~V~sLafSP~dg---~lLaSgs~DGtI~VWDl~tg------ 620 (1715)
+||+|+.+ +.++||....+. .+.+|.+|..+|++|+|.|.-+ .+||+++.|| |+||.+...
T Consensus 186 ~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ 264 (361)
T KOG2445|consen 186 LIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEE 264 (361)
T ss_pred eEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhh
Confidence 78888766 478899875532 4557789999999999999766 5899999999 999998621
Q ss_pred --------------ceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 621 --------------TPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 621 --------------k~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
+.+..+..|++.|+.+.|.-.|..|++++.||+|++|...
T Consensus 265 ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 265 EEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred hcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 2445677899999999999999999999999999999864
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=192.05 Aligned_cols=308 Identities=19% Similarity=0.274 Sum_probs=215.9
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCC---------cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 243 RDAVYCAIFDRSGR-FVITGSDDRLVKIWSMETA---------FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~-~LaTGS~DGtIrIWDl~tg---------k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
..+|+.+.|.+... .||||+.|..|+||-+..+ +.+..|..|...|+++.|+|+|.+||+|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46799999998766 9999999999999987532 3456788999999999999999999999999999999
Q ss_pred ECC--------C--------CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCC
Q 048801 313 RLP--------D--------GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDA 376 (1715)
Q Consensus 313 Dl~--------t--------g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~ 376 (1715)
-.. + ......+.+|...|+.++|+|++. ++++++.|..+++||+..|+....+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~---~l~s~s~dns~~l~Dv~~G~l~~~~-------- 161 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN---FLVSGSVDNSVRLWDVHAGQLLAIL-------- 161 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc---eeeeeeccceEEEEEeccceeEeec--------
Confidence 765 2 123456789999999999999998 8999999999999999988765432
Q ss_pred ccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC-CeeEEE
Q 048801 377 ITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN-DVNYVQ 455 (1715)
Q Consensus 377 i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~-~V~sLa 455 (1715)
..|.+.+..++|.|-++++++-+.|...+++.+.... ....|.. .+...+
T Consensus 162 -----------------~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~------------~~~~~~~~~m~~~~ 212 (434)
T KOG1009|consen 162 -----------------DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQ------------VIKRHGLDIMPAKA 212 (434)
T ss_pred -----------------cccccccceeecchhhhhhhhhccCcccceeeeeeee------------eeeeeeeeEeeecc
Confidence 3467789999999999999999988877777764321 1111110 011111
Q ss_pred EccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCC
Q 048801 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRG 535 (1715)
Q Consensus 456 fspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 535 (1715)
+.+. .....+++.-++.
T Consensus 213 ~~~~----------------------------------e~~s~rLfhDeTl----------------------------- 229 (434)
T KOG1009|consen 213 FNER----------------------------------EGKSTRLFHDETL----------------------------- 229 (434)
T ss_pred cCCC----------------------------------CcceeeeeecCch-----------------------------
Confidence 1110 0112223322210
Q ss_pred CCcccccCCCCCeeEEEeCCCCCEEEEEec----CC-----eEEEEECCC-CceEEEEecCCCCeEEEEEcc-------C
Q 048801 536 GPRQRLLPTPRGVNMIVWSLDNRFVLAAIM----DC-----RICVWNAVD-GSLVHSLTGHSASSYVLDVHP-------F 598 (1715)
Q Consensus 536 ~~~~~l~~h~~~VtslafSPDG~~LaTgs~----DG-----tI~IWDl~s-g~~l~tL~gH~~~V~sLafSP-------~ 598 (1715)
..-...++|+|||.+|++.+. ++ +.++++-.. .++...+.+-..++..+.|+| .
T Consensus 230 ---------ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~ 300 (434)
T KOG1009|consen 230 ---------KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPL 300 (434)
T ss_pred ---------hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccc
Confidence 112345788888888887532 12 234444322 233444545555555555543 0
Q ss_pred ----------CCcEEEEEeCCCcEEEEECCCCceEEEEE-cccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 599 ----------NPRIAMSAGYDGRTIVWDIWEGTPIRIYE-IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 599 ----------dg~lLaSgs~DGtI~VWDl~tgk~l~tl~-~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
-+.++|.++ -..|+|||..+-.++.... .|-..|++++|++||..|+..+.||...+..++..+
T Consensus 301 ~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 301 SSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred cccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 122344444 4579999999888887665 366789999999999999999999998888776654
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-19 Score=208.71 Aligned_cols=313 Identities=15% Similarity=0.205 Sum_probs=241.7
Q ss_pred CeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC
Q 048801 329 AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN 408 (1715)
Q Consensus 329 ~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd 408 (1715)
.-+.+.++.+|. +|+.|+.-|.|..+|+.++.+...+.+ ...|.++.|..+
T Consensus 131 GPY~~~ytrnGr---hlllgGrKGHlAa~Dw~t~~L~~Ei~v--------------------------~Etv~Dv~~LHn 181 (545)
T KOG1272|consen 131 GPYHLDYTRNGR---HLLLGGRKGHLAAFDWVTKKLHFEINV--------------------------METVRDVTFLHN 181 (545)
T ss_pred CCeeeeecCCcc---EEEecCCccceeeeecccceeeeeeeh--------------------------hhhhhhhhhhcc
Confidence 356788999998 899999999999999999988776644 344888999999
Q ss_pred CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCce
Q 048801 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN 488 (1715)
Q Consensus 409 G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~ 488 (1715)
.++||++ ....++|||-.. .+++++..|. .|..+.|.|.- -+
T Consensus 182 eq~~AVA-QK~y~yvYD~~G----------tElHClk~~~-~v~rLeFLPyH--------------------------fL 223 (545)
T KOG1272|consen 182 EQFFAVA-QKKYVYVYDNNG----------TELHCLKRHI-RVARLEFLPYH--------------------------FL 223 (545)
T ss_pred hHHHHhh-hhceEEEecCCC----------cEEeehhhcC-chhhhcccchh--------------------------he
Confidence 9988887 578999999753 3456666554 78889998863 58
Q ss_pred EEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCe
Q 048801 489 IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCR 568 (1715)
Q Consensus 489 LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGt 568 (1715)
|++++..|.+..-|+.+|+.+. .+....+.+..++-+|-+..+-+|..+|+
T Consensus 224 L~~~~~~G~L~Y~DVS~GklVa-----------------------------~~~t~~G~~~vm~qNP~NaVih~GhsnGt 274 (545)
T KOG1272|consen 224 LVAASEAGFLKYQDVSTGKLVA-----------------------------SIRTGAGRTDVMKQNPYNAVIHLGHSNGT 274 (545)
T ss_pred eeecccCCceEEEeechhhhhH-----------------------------HHHccCCccchhhcCCccceEEEcCCCce
Confidence 8999999999999999866433 33444567788889999999999999999
Q ss_pred EEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEE
Q 048801 569 ICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLS 648 (1715)
Q Consensus 569 I~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsg 648 (1715)
|.+|.....+++..+..|.++|.+|++.+ +|++++|+|.|..|+|||++....+.++.. ..+...++||..| |+++
T Consensus 275 VSlWSP~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~ 350 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLAL 350 (545)
T ss_pred EEecCCCCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceee
Confidence 99999999999999999999999999999 899999999999999999999888888875 5677889999888 5555
Q ss_pred eCCCeEEEEEC-CCCccccccccceeecCCCccEEEcCCCCeeeccccccc--------CcCCCCCcccCCCCCC-----
Q 048801 649 DDVGQIYLLNT-GQGESQKDAKYDQFFLGDYRPLIRDSLGNVLDQETQLVP--------HRRNIQDPLCDSSMIP----- 714 (1715)
Q Consensus 649 s~DG~I~IWdl-~tGe~~k~~~~~~~fs~D~r~L~~d~~g~vld~~tq~~p--------~~~~~~~~lvD~~~~p----- 714 (1715)
+....|.||.- ..|......+|..... .+.| ....+|| |...+.+++|+++|.|
T Consensus 351 ~~G~~v~iw~d~~~~s~~~~~pYm~H~~----------~~~V--~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~ 418 (545)
T KOG1272|consen 351 SYGDHVQIWKDALKGSGHGETPYMNHRC----------GGPV--EDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSL 418 (545)
T ss_pred ecCCeeeeehhhhcCCCCCCcchhhhcc----------Cccc--ccceeccHHHeeeccccCCceeEeccCCCCCCcchh
Confidence 56568999963 2222233334433211 1111 2355666 6777889999999999
Q ss_pred CCCccchhhhhhcccccceeecCCCCeEEeeeccccCccCCCCCchhhhcccccCCCccccCc
Q 048801 715 YEEPYQSMYQQRRLGALGIEWRPSSIKLAIGLDFSLGQDYAMPPLEDLERMMEPVPEFIDPVY 777 (1715)
Q Consensus 715 ~p~~~q~~~q~r~~g~~~l~~sPdg~~lAvg~~~~l~~~~~~~P~~d~~~~i~~~p~~i~~~~ 777 (1715)
..+||.+-.|+++.-... ---.++| +||...|..|..++
T Consensus 419 e~nPfetrKQRqE~EVr~-------------------LLeKipp-----ElIsLdp~~i~~vd 457 (545)
T KOG1272|consen 419 EDNPFETRKQRQEKEVRS-------------------LLEKIPP-----ELISLDPRVIGIVD 457 (545)
T ss_pred ccCcchhhhHHhHHHHHH-------------------HHhhCCh-----HhEEechhhccccC
Confidence 578899998888732211 0123666 78898888887764
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=194.37 Aligned_cols=240 Identities=19% Similarity=0.279 Sum_probs=184.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC---cEEEE------------------ecCCCCCeEEEEECCC-CCEEEEEeCCCeeEE
Q 048801 254 SGRFVITGSDDRLVKIWSMETA---FCLAS------------------CRGHEGDITDLAVSSN-NTLVASASNDFVIRV 311 (1715)
Q Consensus 254 DG~~LaTGS~DGtIrIWDl~tg---k~l~t------------------L~gHs~~VtsLafSpD-g~lLASGS~DGtIrV 311 (1715)
-|+|+|.|..|..|.|||+.-. .+..+ -.+|+..|.+|+|+.+ ...||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 4689999999999999998521 11111 2379999999999875 468999999999999
Q ss_pred EECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 312 WRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 312 WDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
||+.+|++..++..|.+.|.++.|+|.... +|++|+.|++|.+.|.+........
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~--~LLsGs~D~~V~l~D~R~~~~s~~~----------------------- 325 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPS--VLLSGSYDGTVALKDCRDPSNSGKE----------------------- 325 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCce--EEEeccccceEEeeeccCccccCce-----------------------
Confidence 999999999999999999999999998764 8999999999999999842211110
Q ss_pred CCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccc
Q 048801 392 SNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~ 470 (1715)
-...+.|-.++|.|.. ..+++++.||+|+-+|++.. ..++..+.+|.+.|.+|++++..
T Consensus 326 --wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~--------~~~vwt~~AHd~~ISgl~~n~~~---------- 385 (463)
T KOG0270|consen 326 --WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP--------GKPVWTLKAHDDEISGLSVNIQT---------- 385 (463)
T ss_pred --EEeccceEEEEecCCCceeEEEecCCceEEeeecCCC--------CCceeEEEeccCCcceEEecCCC----------
Confidence 0114568899999865 57888889999999999864 46788999999999999998754
Q ss_pred ccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeE
Q 048801 471 FKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNM 550 (1715)
Q Consensus 471 ~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vts 550 (1715)
+.+++|++.|+.|++|++....... +....-.-+...|
T Consensus 386 ---------------p~~l~t~s~d~~Vklw~~~~~~~~~---------------------------v~~~~~~~~rl~c 423 (463)
T KOG0270|consen 386 ---------------PGLLSTASTDKVVKLWKFDVDSPKS---------------------------VKEHSFKLGRLHC 423 (463)
T ss_pred ---------------CcceeeccccceEEEEeecCCCCcc---------------------------cccccccccceee
Confidence 5789999999999999987422100 0000001122567
Q ss_pred EEeCCCCC-EEEEEecCCeEEEEECCCCceE
Q 048801 551 IVWSLDNR-FVLAAIMDCRICVWNAVDGSLV 580 (1715)
Q Consensus 551 lafSPDG~-~LaTgs~DGtI~IWDl~sg~~l 580 (1715)
.++.|+-. +|++|+..+.++|||+.+...+
T Consensus 424 ~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 424 FALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccCCCcceEEEecCccceEEEeecccChhH
Confidence 77777654 5677888889999999776544
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-16 Score=187.91 Aligned_cols=182 Identities=14% Similarity=0.185 Sum_probs=133.1
Q ss_pred ccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEE
Q 048801 484 FCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLA 562 (1715)
Q Consensus 484 ~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaT 562 (1715)
|+...|++++.||.|++|.+..+... .....+...+..|...|+.+.|+| -...|++
T Consensus 638 FD~~rLAVa~ddg~i~lWr~~a~gl~----------------------e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~ 695 (1012)
T KOG1445|consen 638 FDDERLAVATDDGQINLWRLTANGLP----------------------ENEMTPEKILTIHGEKITSLRFHPLAADVLAV 695 (1012)
T ss_pred CChHHeeecccCceEEEEEeccCCCC----------------------cccCCcceeeecccceEEEEEecchhhhHhhh
Confidence 34689999999999999998753311 111234456778899999999999 4568899
Q ss_pred EecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eEEEEEccc-ceEEEEEEcC
Q 048801 563 AIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT-PIRIYEIGR-FKLVDGKFSP 640 (1715)
Q Consensus 563 gs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk-~l~tl~~h~-~~V~svafSP 640 (1715)
++.|.+|++||+.+++....|.+|++.|.+++||| +++.+++.+.||+|+||.-.+++ ++..-.+.. ..-..+.|--
T Consensus 696 asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac 774 (1012)
T KOG1445|consen 696 ASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC 774 (1012)
T ss_pred hhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe
Confidence 99999999999999999999999999999999999 88999999999999999987764 333222111 1234578999
Q ss_pred CCCEEEEEeCCC----eEEEEECCCCc--ccc-------ccccceeecCCCccEEEcCCCC
Q 048801 641 DGTSIVLSDDVG----QIYLLNTGQGE--SQK-------DAKYDQFFLGDYRPLIRDSLGN 688 (1715)
Q Consensus 641 DG~~LAsgs~DG----~I~IWdl~tGe--~~k-------~~~~~~~fs~D~r~L~~d~~g~ 688 (1715)
||++|++.+.|. +|.+|+..+-. .+. ..+.-.++-.|...|.+...|.
T Consensus 775 dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD 835 (1012)
T KOG1445|consen 775 DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGD 835 (1012)
T ss_pred cCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCC
Confidence 999999887654 67788754321 111 1112234556666666655544
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.1e-18 Score=216.59 Aligned_cols=286 Identities=20% Similarity=0.338 Sum_probs=219.8
Q ss_pred EEEEcCCCC-EEEEE----------eCCCcEEEEeCCC--C----cEEEEecCCCCCeEEEEECCCCCE----EEEEeCC
Q 048801 248 CAIFDRSGR-FVITG----------SDDRLVKIWSMET--A----FCLASCRGHEGDITDLAVSSNNTL----VASASND 306 (1715)
Q Consensus 248 ~VafSpDG~-~LaTG----------S~DGtIrIWDl~t--g----k~l~tL~gHs~~VtsLafSpDg~l----LASGS~D 306 (1715)
.++|+|++. ++|+| +.+.++-||.+.- . +.+..+. -....+.++|.+.|.. ||.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 467888876 55554 3355677776532 2 2333333 3457889999987654 8899999
Q ss_pred CeeEEEECCC---C---CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCc
Q 048801 307 FVIRVWRLPD---G---LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGK 380 (1715)
Q Consensus 307 GtIrVWDl~t---g---~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~ 380 (1715)
|.|.+||... + ..+.+...|.+.|..|.|++...+ +|++|+.||.|.|||+...+.-....
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n--lLASGa~~geI~iWDlnn~~tP~~~~----------- 156 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN--LLASGADDGEILIWDLNKPETPFTPG----------- 156 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc--eeeccCCCCcEEEeccCCcCCCCCCC-----------
Confidence 9999999764 2 345667789999999999998775 89999999999999998643211110
Q ss_pred cCCCCCCCCCCCCCCCCcceeEEEEccC-CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCC--CCeeEEEEc
Q 048801 381 SNVPSNNGPSSSNGLQSHQILCCAYNAN-GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE--NDVNYVQFS 457 (1715)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~VtslafSpd-G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~--~~V~sLafs 457 (1715)
.......|.|++|+.. ..+|++++.+|.+.|||++..+ .+-.+..|. ..+..|+|+
T Consensus 157 ------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~---------pii~ls~~~~~~~~S~l~Wh 215 (1049)
T KOG0307|consen 157 ------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK---------PIIKLSDTPGRMHCSVLAWH 215 (1049)
T ss_pred ------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC---------cccccccCCCccceeeeeeC
Confidence 1223567999999975 4678899999999999998643 222333333 357789999
Q ss_pred cCcccccccccccccccccccccCCcccCceEEEEcCCC---eEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 458 GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG---SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 458 pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG---sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
|+. ...|++++.|. .|.+||++..
T Consensus 216 P~~-------------------------aTql~~As~dd~~PviqlWDlR~a---------------------------- 242 (1049)
T KOG0307|consen 216 PDH-------------------------ATQLLVASGDDSAPVIQLWDLRFA---------------------------- 242 (1049)
T ss_pred CCC-------------------------ceeeeeecCCCCCceeEeeccccc----------------------------
Confidence 986 35677776554 5899999842
Q ss_pred CCCcccccCCCCCeeEEEeCCCC-CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTI 613 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPDG-~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~ 613 (1715)
..+.+.+.+|..+|.++.|++.+ .+|++++.|+.|.+|+..+|+.+..+......+..+.|+|-++.++++++.||.|-
T Consensus 243 ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 243 SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence 23456678899999999999966 89999999999999999999999999998999999999998888999999999999
Q ss_pred EEECCCCc
Q 048801 614 VWDIWEGT 621 (1715)
Q Consensus 614 VWDl~tgk 621 (1715)
|+.+..+.
T Consensus 323 I~sl~~~~ 330 (1049)
T KOG0307|consen 323 IYSLQGTD 330 (1049)
T ss_pred eeeeecCC
Confidence 99986543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-17 Score=195.78 Aligned_cols=301 Identities=17% Similarity=0.237 Sum_probs=207.3
Q ss_pred EEECC---CCCEEEEEeCCCeeEEEECCCCCc------eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC
Q 048801 291 LAVSS---NNTLVASASNDFVIRVWRLPDGLP------ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY 361 (1715)
Q Consensus 291 LafSp---Dg~lLASGS~DGtIrVWDl~tg~~------l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t 361 (1715)
..|++ ...+||.+..||.|.++|...... +.....|...|..+.|.| +.. +|++++.|.++++||+.+
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~--~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES--LLVSASGDSTIRPWDVKT 131 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce--eEEEccCCceeeeeeecc
Confidence 55654 346899999999999999764322 345568999999999999 443 899999999999999988
Q ss_pred CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCC------
Q 048801 362 SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDS------ 434 (1715)
Q Consensus 362 g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~------ 434 (1715)
+.+...- ...+|...|.++||.+.. ..|++|+.||.|.|||++-......
T Consensus 132 s~l~G~~-----------------------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~ 188 (720)
T KOG0321|consen 132 SRLVGGR-----------------------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNR 188 (720)
T ss_pred ceeecce-----------------------eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhh
Confidence 7653221 235678889999999955 6899999999999999975431100
Q ss_pred ------C--CCc----eeeeeecCCCCCeeE----EEEccCcccccccccccccccccccccCCcccCceEEEEcC-CCe
Q 048801 435 ------E--QPI----HELDVLSGHENDVNY----VQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR-DGS 497 (1715)
Q Consensus 435 ------~--~~~----~~l~~l~gH~~~V~s----Lafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~-DGs 497 (1715)
. .+. +.+.....+...|.+ +.| .+...||+++. |+.
T Consensus 189 ~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f---------------------------kDe~tlaSaga~D~~ 241 (720)
T KOG0321|consen 189 IYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF---------------------------KDESTLASAGAADST 241 (720)
T ss_pred hhccccCCCCCCchhhccccccccccCceeeeeEEEEE---------------------------eccceeeeccCCCcc
Confidence 0 000 001111222222222 222 23468888887 999
Q ss_pred EEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC
Q 048801 498 AIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG 577 (1715)
Q Consensus 498 IrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg 577 (1715)
|+|||++......... +........-.....++.++.....|.+|++.+.|+.|++|++.+-
T Consensus 242 iKVWDLRk~~~~~r~e------------------p~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 242 IKVWDLRKNYTAYRQE------------------PRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred eEEEeecccccccccC------------------CCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 9999999644221110 0000000011122456888999999999999999999999999763
Q ss_pred --ceEEEEecCCCCeE--EEEEccCCCcEEEEEeCCCcEEEEECCCCc-eEEEEEcccceEEEEEEcCCC-CEEEEEeCC
Q 048801 578 --SLVHSLTGHSASSY--VLDVHPFNPRIAMSAGYDGRTIVWDIWEGT-PIRIYEIGRFKLVDGKFSPDG-TSIVLSDDV 651 (1715)
Q Consensus 578 --~~l~tL~gH~~~V~--sLafSP~dg~lLaSgs~DGtI~VWDl~tgk-~l~tl~~h~~~V~svafSPDG-~~LAsgs~D 651 (1715)
.++..+.++...-. .-..+| ++.++++|+.|..+++|.+.+.+ ....+.+|...|++++|.|.. .-+|++++|
T Consensus 304 s~sP~~~~sg~~~~sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD 382 (720)
T KOG0321|consen 304 SISPVAEFSGKLNSSFYVKSELSP-DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDD 382 (720)
T ss_pred CcCchhhccCcccceeeeeeecCC-CCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccC
Confidence 34445555433211 123577 77899999999999999998754 566677888999999998743 346677999
Q ss_pred CeEEEEECCCCc
Q 048801 652 GQIYLLNTGQGE 663 (1715)
Q Consensus 652 G~I~IWdl~tGe 663 (1715)
..+.||++..|-
T Consensus 383 ~~~kiW~l~~~l 394 (720)
T KOG0321|consen 383 FRVKIWRLSNGL 394 (720)
T ss_pred cceEEEeccCch
Confidence 999999997663
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-17 Score=187.82 Aligned_cols=266 Identities=18% Similarity=0.270 Sum_probs=194.9
Q ss_pred EeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeE
Q 048801 323 LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILC 402 (1715)
Q Consensus 323 L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vts 402 (1715)
...|.+.++.+...+-+... +.++-+..|.|.||++...- ..+..+. .........+......|...-..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~-~~aswse~G~V~Vw~l~~~l--~~l~~~~-------~~~~~s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEV-LCASWSENGRVQVWDLAPHL--NALSEPG-------LEVKDSEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccceeeecccCCcc-eeeeecccCcEEEEEchhhh--hhhcCcc-------ccccccccCceEEecccCcccee
Confidence 34688888888888776433 67788899999999986321 1111110 00011234455566777888899
Q ss_pred EEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccC
Q 048801 403 CAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 403 lafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
++|||-. ..|++|..-+.|++|...++.-.. -...+.+|+..|..|+|+|..
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v------d~~Pf~gH~~SVEDLqWSptE--------------------- 269 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV------DQRPFTGHTKSVEDLQWSPTE--------------------- 269 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceee------cCccccccccchhhhccCCcc---------------------
Confidence 9999932 247888888999999998764311 123467799999999999975
Q ss_pred CcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La 561 (1715)
...|++|+.||+|+|||++.+.. ........|...|+.|.|+.+-.+||
T Consensus 270 ----~~vfaScS~DgsIrIWDiRs~~~---------------------------~~~~~~kAh~sDVNVISWnr~~~lLa 318 (440)
T KOG0302|consen 270 ----DGVFASCSCDGSIRIWDIRSGPK---------------------------KAAVSTKAHNSDVNVISWNRREPLLA 318 (440)
T ss_pred ----CceEEeeecCceEEEEEecCCCc---------------------------cceeEeeccCCceeeEEccCCcceee
Confidence 47999999999999999997431 11223367888999999999888999
Q ss_pred EEecCCeEEEEECCC---CceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc----------------e
Q 048801 562 AAIMDCRICVWNAVD---GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT----------------P 622 (1715)
Q Consensus 562 Tgs~DGtI~IWDl~s---g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk----------------~ 622 (1715)
+|+.||+++|||++. ++++..|+-|..+|++|.|+|.....|+++|.|..|.|||+.... +
T Consensus 319 sG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlP 398 (440)
T KOG0302|consen 319 SGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLP 398 (440)
T ss_pred ecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCC
Confidence 999999999999975 678999999999999999999888999999999999999985311 1
Q ss_pred EEEEEcc--cceEEEEEEcCCCC-EEEEEeCCCeEEEE
Q 048801 623 IRIYEIG--RFKLVDGKFSPDGT-SIVLSDDVGQIYLL 657 (1715)
Q Consensus 623 l~tl~~h--~~~V~svafSPDG~-~LAsgs~DG~I~IW 657 (1715)
-+.+..| ...+-.+.|++.-. +|++.+.|| +.||
T Consensus 399 pQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 399 PQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred ceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 1122223 34577888988643 555666666 3444
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=182.59 Aligned_cols=311 Identities=18% Similarity=0.229 Sum_probs=216.1
Q ss_pred eEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec-CCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 235 NIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR-GHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~-gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
+...|++|.+.|+|+.|..+++ |.+|..-|.|++|++.+.+.+..++ .|...|+.+.--|+ ..|.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 4567889999999999998875 8899999999999999999888888 57778999998887 4677888999999999
Q ss_pred CCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCC-cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCC
Q 048801 314 LPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG-TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392 (1715)
Q Consensus 314 l~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DG-tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~ 392 (1715)
+.-+..+. .|.-.++++.|++.. +...+... .+..++-+....+.....+...+ .......
T Consensus 84 ia~s~~i~---i~Si~~nslgFCrfS-----l~~~~k~~eqll~yp~rgsde~h~~D~g~~tq----------v~i~dd~ 145 (323)
T KOG0322|consen 84 IAYSAFIS---IHSIVVNSLGFCRFS-----LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQ----------VQIADDS 145 (323)
T ss_pred ccCcceEE---Eeeeeccccccccce-----eccCCCcchhheecCCcccchhhhhccCccce----------eEccCch
Confidence 97755443 355667788887752 33333222 22222222111100000000000 0000111
Q ss_pred CCCCCcceeEEEEcc-CC--CeEEEecCCCeEEEEeCCCCCc-cCCCCCceeeeeecCCCCCeeEEEEccCccccccccc
Q 048801 393 NGLQSHQILCCAYNA-NG--TVFVTGSSDTFARVWSACKSSV-EDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468 (1715)
Q Consensus 393 ~~~h~~~VtslafSp-dG--~~LatGs~DG~IrVWDl~t~~~-~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~ 468 (1715)
.....+.++|..+.. ++ -++++|.++|.+.+||+.++.. ....+..+.......|..+|.++.|.+..
T Consensus 146 ~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-------- 217 (323)
T KOG0322|consen 146 ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-------- 217 (323)
T ss_pred hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh--------
Confidence 122344577777544 23 2577888999999999987522 12222233445567799999999998643
Q ss_pred ccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCe
Q 048801 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548 (1715)
Q Consensus 469 ~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V 548 (1715)
+.=++|+.+..+..|++....... .....+.-...+|
T Consensus 218 ------------------~rGisgga~dkl~~~Sl~~s~gsl-------------------------q~~~e~~lknpGv 254 (323)
T KOG0322|consen 218 ------------------DRGISGGADDKLVMYSLNHSTGSL-------------------------QIRKEITLKNPGV 254 (323)
T ss_pred ------------------cCCcCCCccccceeeeeccccCcc-------------------------cccceEEecCCCc
Confidence 345677777788888776321000 0011122234468
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 549 NMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 549 tslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
..+.+-||++.+||++.|+.|+||+.+++.++..|+-|.+.|++++|+| +..++|+++.|++|-+|++
T Consensus 255 ~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 255 SGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred cceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 8899999999999999999999999999999999999999999999999 6789999999999999986
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-17 Score=186.03 Aligned_cols=252 Identities=21% Similarity=0.308 Sum_probs=193.1
Q ss_pred ecCCCCCeEEEEECCCC--CEEEEEeCCCeeEEEECCC----------------CCceEEEeCCCCCeEEEEecCCCCcc
Q 048801 281 CRGHEGDITDLAVSSNN--TLVASASNDFVIRVWRLPD----------------GLPISVLRGHTGAVTAIAFSPRPSAI 342 (1715)
Q Consensus 281 L~gHs~~VtsLafSpDg--~lLASGS~DGtIrVWDl~t----------------g~~l~~L~gH~~~VtsLafSPdg~~~ 342 (1715)
.-.|.+.|+.+..++-+ .+.|+-+..|.|.||++.. .+++.++.+|.+.-++|+|||-...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g- 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG- 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-
Confidence 34688888888887754 4556667789999999842 3678888999999999999995432
Q ss_pred eEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeE
Q 048801 343 YQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFA 421 (1715)
Q Consensus 343 ~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~I 421 (1715)
.|++|..-+.|++|...++.... ....+..|...|-.++|||.. .+|++|+.||+|
T Consensus 226 -~LlsGDc~~~I~lw~~~~g~W~v----------------------d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsI 282 (440)
T KOG0302|consen 226 -RLLSGDCVKGIHLWEPSTGSWKV----------------------DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSI 282 (440)
T ss_pred -ccccCccccceEeeeeccCceee----------------------cCccccccccchhhhccCCccCceEEeeecCceE
Confidence 68899888999999987765311 112234478889999999954 689999999999
Q ss_pred EEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEE
Q 048801 422 RVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW 501 (1715)
Q Consensus 422 rVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIW 501 (1715)
+|||++.+. .+......+|.+.|+.|.|+... .+|++|+.||+++||
T Consensus 283 rIWDiRs~~-------~~~~~~~kAh~sDVNVISWnr~~--------------------------~lLasG~DdGt~~iw 329 (440)
T KOG0302|consen 283 RIWDIRSGP-------KKAAVSTKAHNSDVNVISWNRRE--------------------------PLLASGGDDGTLSIW 329 (440)
T ss_pred EEEEecCCC-------ccceeEeeccCCceeeEEccCCc--------------------------ceeeecCCCceEEEE
Confidence 999998752 12223348999999999999864 589999999999999
Q ss_pred ecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC-CCEEEEEecCCeEEEEECCCCc--
Q 048801 502 IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD-NRFVLAAIMDCRICVWNAVDGS-- 578 (1715)
Q Consensus 502 Dl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD-G~~LaTgs~DGtI~IWDl~sg~-- 578 (1715)
|+++-+ .+.++..+.-|..+|++|.|+|. ...|++++.|..|.|||+.--.
T Consensus 330 DLR~~~--------------------------~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ 383 (440)
T KOG0302|consen 330 DLRQFK--------------------------SGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADE 383 (440)
T ss_pred Ehhhcc--------------------------CCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCCh
Confidence 998622 23577788899999999999984 5677888899999999985311
Q ss_pred --------------eEEEEecC--CCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 579 --------------LVHSLTGH--SASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 579 --------------~l~tL~gH--~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
+.+.|--| ...|..|.||+.-+.+|++.+.|| +.||.
T Consensus 384 ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 384 EEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred hhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 01112223 345788999998889999999998 44553
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.4e-16 Score=191.70 Aligned_cols=361 Identities=17% Similarity=0.209 Sum_probs=253.5
Q ss_pred cccccceeEEEEcCCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEeCCCCcEEEEec----------------------
Q 048801 228 TMVQKMQNIKKLRGHRDAVYCAIFDRSG---RFVITGSDDRLVKIWSMETAFCLASCR---------------------- 282 (1715)
Q Consensus 228 ~~~~~~k~l~~L~GH~~~Vt~VafSpDG---~~LaTGS~DGtIrIWDl~tgk~l~tL~---------------------- 282 (1715)
....+..++..|.+|..+++.+.+.|.. .++++++.||.|++||...+.+++++.
T Consensus 42 yS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~ 121 (792)
T KOG1963|consen 42 YSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVY 121 (792)
T ss_pred EecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeE
Confidence 3445678888999999999999998754 478899999999999986554332110
Q ss_pred --------------------------------------------------------------------------------
Q 048801 283 -------------------------------------------------------------------------------- 282 (1715)
Q Consensus 283 -------------------------------------------------------------------------------- 282 (1715)
T Consensus 122 ~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~ 201 (792)
T KOG1963|consen 122 VSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDIT 201 (792)
T ss_pred eecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhh
Confidence
Q ss_pred -CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC----CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEE
Q 048801 283 -GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD----GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357 (1715)
Q Consensus 283 -gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t----g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIW 357 (1715)
.|.-.++|.++||+++++|+|..||.|.||.--. ......+.-|...|++++|+++|. +|++||..|.+.+|
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~---~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA---YLLSGGREGVLVLW 278 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCc---eEeecccceEEEEE
Confidence 2445678999999999999999999999996321 234566778999999999999998 89999999999999
Q ss_pred ecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCC
Q 048801 358 DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQP 437 (1715)
Q Consensus 358 Dl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~ 437 (1715)
.+.+++. . .+|. -+..|..+.++||+.+.++...|..|.+....+.......+.
T Consensus 279 q~~T~~k--q-fLPR-----------------------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsg 332 (792)
T KOG1963|consen 279 QLETGKK--Q-FLPR-----------------------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISG 332 (792)
T ss_pred eecCCCc--c-cccc-----------------------cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccC
Confidence 9988762 1 1111 155699999999999999999999999998865433222111
Q ss_pred ceee--eeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccc
Q 048801 438 IHEL--DVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW 515 (1715)
Q Consensus 438 ~~~l--~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~ 515 (1715)
.... ..-....+-.+.+.++|.. +.++-.+..|.|.+||+-+...+.++...
T Consensus 333 i~~~~~~~k~~~~~l~t~~~idpr~--------------------------~~~vln~~~g~vQ~ydl~td~~i~~~~v~ 386 (792)
T KOG1963|consen 333 IKPPTPSTKTRPQSLTTGVSIDPRT--------------------------NSLVLNGHPGHVQFYDLYTDSTIYKLQVC 386 (792)
T ss_pred ccCCCccccccccccceeEEEcCCC--------------------------CceeecCCCceEEEEeccccceeeeEEEE
Confidence 1111 0011223344556666632 67888999999999999875543322111
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe--------cCC--eEEEEECCCCceEEEE--
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI--------MDC--RICVWNAVDGSLVHSL-- 583 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs--------~DG--tI~IWDl~sg~~l~tL-- 583 (1715)
...+. .+ ...+.-+++.++.+..|.+++|+- .|| .+++|-......-..|
T Consensus 387 ~~n~~-------------~~-----~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T 448 (792)
T KOG1963|consen 387 DENYS-------------DG-----DVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNT 448 (792)
T ss_pred eeccc-------------CC-----cceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEE
Confidence 11110 00 002344688888898999999864 233 5788977554433332
Q ss_pred ---ecCCCCeEEEEEccCCCc-EEEEEeCCCcEEEEECCCC----------ceEEEEEcccceEEEEEEcCCCCEEEEEe
Q 048801 584 ---TGHSASSYVLDVHPFNPR-IAMSAGYDGRTIVWDIWEG----------TPIRIYEIGRFKLVDGKFSPDGTSIVLSD 649 (1715)
Q Consensus 584 ---~gH~~~V~sLafSP~dg~-lLaSgs~DGtI~VWDl~tg----------k~l~tl~~h~~~V~svafSPDG~~LAsgs 649 (1715)
..|...+.+.++.+.-.. .+++++.||.++||-+... .|...-.-|..+++.++||.||..|+ ++
T Consensus 449 ~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s 527 (792)
T KOG1963|consen 449 KINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VS 527 (792)
T ss_pred EEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-Ee
Confidence 478777666666543333 8889999999999988321 23322223678899999999996555 45
Q ss_pred CCCeEEEEECCCC
Q 048801 650 DVGQIYLLNTGQG 662 (1715)
Q Consensus 650 ~DG~I~IWdl~tG 662 (1715)
.++.|.|||..+.
T Consensus 528 ~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 528 FDDTITIWDYDTK 540 (792)
T ss_pred cCCEEEEecCCCh
Confidence 6689999998873
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-16 Score=184.42 Aligned_cols=284 Identities=14% Similarity=0.142 Sum_probs=208.1
Q ss_pred CcEEEEeCCCCcEEEEecCCC--CCeEEEEECCCCCE-EEEEeCCCeeEEEECCCC--Cc--eEEEeCCCCCeEEEEecC
Q 048801 265 RLVKIWSMETAFCLASCRGHE--GDITDLAVSSNNTL-VASASNDFVIRVWRLPDG--LP--ISVLRGHTGAVTAIAFSP 337 (1715)
Q Consensus 265 GtIrIWDl~tgk~l~tL~gHs--~~VtsLafSpDg~l-LASGS~DGtIrVWDl~tg--~~--l~~L~gH~~~VtsLafSP 337 (1715)
..++|||+........+..|+ ..|.+++|+....+ +++.+.|..|++|.-... +. +..+.+. .-.|++...
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s 89 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACAS 89 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhh
Confidence 379999987665544443332 35889999887642 334456888999974322 11 1222222 334444443
Q ss_pred CCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC
Q 048801 338 RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS 417 (1715)
Q Consensus 338 dg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~ 417 (1715)
... ++++|+..+.|+|||++...+.+ ....|...|+++.++-...+||+++.
T Consensus 90 ~S~---y~~sgG~~~~Vkiwdl~~kl~hr-------------------------~lkdh~stvt~v~YN~~DeyiAsvs~ 141 (673)
T KOG4378|consen 90 QSL---YEISGGQSGCVKIWDLRAKLIHR-------------------------FLKDHQSTVTYVDYNNTDEYIASVSD 141 (673)
T ss_pred cce---eeeccCcCceeeehhhHHHHHhh-------------------------hccCCcceeEEEEecCCcceeEEecc
Confidence 333 89999999999999998433222 12346778999999999999999999
Q ss_pred CCeEEEEeCCCCCccCCCCCceeeeeecCC-CCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC
Q 048801 418 DTFARVWSACKSSVEDSEQPIHELDVLSGH-ENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG 496 (1715)
Q Consensus 418 DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH-~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG 496 (1715)
.|.|.|..+.++.. ...+... ...|.-+.|++.. ..+|.+++.+|
T Consensus 142 gGdiiih~~~t~~~---------tt~f~~~sgqsvRll~ys~sk-------------------------r~lL~~asd~G 187 (673)
T KOG4378|consen 142 GGDIIIHGTKTKQK---------TTTFTIDSGQSVRLLRYSPSK-------------------------RFLLSIASDKG 187 (673)
T ss_pred CCcEEEEecccCcc---------ccceecCCCCeEEEeeccccc-------------------------ceeeEeeccCC
Confidence 99999999987531 2223222 3456678888754 46888999999
Q ss_pred eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC-CEEEEEecCCeEEEEECC
Q 048801 497 SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAV 575 (1715)
Q Consensus 497 sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG-~~LaTgs~DGtI~IWDl~ 575 (1715)
.|.+||+...... ......|..+...|+|+|.+ .+|++.+.|..|.+||+.
T Consensus 188 ~VtlwDv~g~sp~----------------------------~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 188 AVTLWDVQGMSPI----------------------------FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred eEEEEeccCCCcc----------------------------cchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 9999999863321 12234577888899999955 567889999999999998
Q ss_pred CCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-CceEEEEEcccceEEEEEEcCCC
Q 048801 576 DGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE-GTPIRIYEIGRFKLVDGKFSPDG 642 (1715)
Q Consensus 576 sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t-gk~l~tl~~h~~~V~svafSPDG 642 (1715)
..+....+. ...+...|+|++ +|.+|+.|...|.|..||++. ..++.++..|...|++++|-|.-
T Consensus 240 s~~s~~~l~-y~~Plstvaf~~-~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 240 SQASTDRLT-YSHPLSTVAFSE-CGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccccceee-ecCCcceeeecC-CceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 777766665 455778999999 889999999999999999975 57899999999999999998875
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=180.81 Aligned_cols=302 Identities=16% Similarity=0.231 Sum_probs=214.6
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC------CcEEEEec-CCCCCeEEEEECCCCCEEEEEeCCCe
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET------AFCLASCR-GHEGDITDLAVSSNNTLVASASNDFV 308 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~t------gk~l~tL~-gHs~~VtsLafSpDg~lLASGS~DGt 308 (1715)
.+.+.+|.+.|+++.|+.++++||+|++|..++||+++. .+++.... .|...|.|++|...+++|++|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 455789999999999999999999999999999999853 34554443 35689999999999999999999999
Q ss_pred eEEEECCCCCceEEEeC--CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 309 IRVWRLPDGLPISVLRG--HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 309 IrVWDl~tg~~l~~L~g--H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
|.+.|+++.+.+.++.. ..+.|+.+..+|..+ .|++.+.++.|.+||++.........++
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN---~~~~~t~~~~V~~~D~Rd~~~~~~~~~~--------------- 190 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN---TLIVVTRAKLVSFIDNRDRQNPISLVLP--------------- 190 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCc---eEEEEecCceEEEEeccCCCCCCceeee---------------
Confidence 99999999988877752 235999999999866 8999999999999999865522221111
Q ss_pred CCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceee---eeecCCCCCeeEEEEccCccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHEL---DVLSGHENDVNYVQFSGCAVA 462 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l---~~l~gH~~~V~sLafspdg~a 462 (1715)
...+.....+.|+|.. .+|++++..+-+-+||++.... +.... ..+......-..+.|+|+|
T Consensus 191 -------AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~-----~~~~~~~~~~L~~~~~~~M~~~~~~~G-- 256 (609)
T KOG4227|consen 191 -------ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQAR-----PVYQRSMFKGLPQENTEWMGSLWSPSG-- 256 (609)
T ss_pred -------cCCCccceeeeecCCCceeEEeccccCCCCceeeccccc-----hHHhhhccccCcccchhhhheeeCCCC--
Confidence 1123446788999954 6888999999999999986431 11000 1111111222456788876
Q ss_pred ccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccccc
Q 048801 463 SRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLL 542 (1715)
Q Consensus 463 s~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~ 542 (1715)
+.|++.-....-.+||+-+.++.... +.. .+.+ .
T Consensus 257 ------------------------~Q~msiRR~~~P~~~D~~S~R~~V~k--------~D~--------N~~G------Y 290 (609)
T KOG4227|consen 257 ------------------------NQFMSIRRGKCPLYFDFISQRCFVLK--------SDH--------NPNG------Y 290 (609)
T ss_pred ------------------------CeehhhhccCCCEEeeeecccceeEe--------ccC--------CCCc------c
Confidence 45555544444556666543211100 000 0000 0
Q ss_pred CCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC----------C-------------ceEEEEecCCCCeEEEEEccCC
Q 048801 543 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD----------G-------------SLVHSLTGHSASSYVLDVHPFN 599 (1715)
Q Consensus 543 ~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s----------g-------------~~l~tL~gH~~~V~sLafSP~d 599 (1715)
.....+.+++|--|- .|++|+.+-.|++|.+.. | +.+.+|+||..-++.|.|+| .
T Consensus 291 ~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~-H 368 (609)
T KOG4227|consen 291 CNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ-H 368 (609)
T ss_pred eeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC-C
Confidence 012235667776554 499999999999998843 1 13567899999999999999 7
Q ss_pred CcEEEEEeCCCcEEEEEC
Q 048801 600 PRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 600 g~lLaSgs~DGtI~VWDl 617 (1715)
..+|++.|....++||.-
T Consensus 369 ~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 369 NNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cceEeccchhhheecccc
Confidence 789999999999999974
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-16 Score=177.61 Aligned_cols=310 Identities=18% Similarity=0.282 Sum_probs=219.4
Q ss_pred EcCCCCCeEEEEEcC-----CCCEEEEEeCCCcEEEEeCCCC---cEEEEec--CCCCCeEEEEECCC----CCEEEEEe
Q 048801 239 LRGHRDAVYCAIFDR-----SGRFVITGSDDRLVKIWSMETA---FCLASCR--GHEGDITDLAVSSN----NTLVASAS 304 (1715)
Q Consensus 239 L~GH~~~Vt~VafSp-----DG~~LaTGS~DGtIrIWDl~tg---k~l~tL~--gHs~~VtsLafSpD----g~lLASGS 304 (1715)
..+|..+|+.++|.+ +-..+||+|. ..|.||..... ..++++. .|......++|+-| +-+||+|+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 357899999999984 3346777765 47888886532 3444443 36778888899764 35889999
Q ss_pred CCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 305 NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 305 ~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
.-|.|+|.|+.++++...+.+|...|+.|.|+|+... ++++++.|..|++|++.+..++..+-
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~q--lvls~SkD~svRlwnI~~~~Cv~VfG--------------- 175 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQ--LVLSASKDHSVRLWNIQTDVCVAVFG--------------- 175 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCc--EEEEecCCceEEEEeccCCeEEEEec---------------
Confidence 9999999999999999999999999999999999764 89999999999999999988766541
Q ss_pred CCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCC------------C-------ceeeeeec
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQ------------P-------IHELDVLS 445 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~------------~-------~~~l~~l~ 445 (1715)
...+|...|.++.|+.+|.+|++++.|..|.+|++...+...... + .....+-.
T Consensus 176 -------G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~d 248 (385)
T KOG1034|consen 176 -------GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTD 248 (385)
T ss_pred -------ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccc
Confidence 135678899999999999999999999999999998543210000 0 00001122
Q ss_pred CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCC
Q 048801 446 GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPP 525 (1715)
Q Consensus 446 gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~ 525 (1715)
-|...|.|+.|- ++++++-+.++.|..|.... + ...++ .+.+
T Consensus 249 iHrnyVDCvrw~----------------------------gd~ilSkscenaI~~w~pgk------l---~e~~~-~vkp 290 (385)
T KOG1034|consen 249 IHRNYVDCVRWF----------------------------GDFILSKSCENAIVCWKPGK------L---EESIH-NVKP 290 (385)
T ss_pred cccchHHHHHHH----------------------------hhheeecccCceEEEEecch------h---hhhhh-ccCC
Confidence 344444444443 26899999999999997621 0 00111 0000
Q ss_pred CCCCCCCCCCCCcccccCCCCCeeEE--EeCCCCCEEEEEecCCeEEEEECCCCceE--EEEec--CCCCeEEEEEccCC
Q 048801 526 PPLPPQPPRGGPRQRLLPTPRGVNMI--VWSLDNRFVLAAIMDCRICVWNAVDGSLV--HSLTG--HSASSYVLDVHPFN 599 (1715)
Q Consensus 526 ~~~~~~~~~g~~~~~l~~h~~~Vtsl--afSPDG~~LaTgs~DGtI~IWDl~sg~~l--~tL~g--H~~~V~sLafSP~d 599 (1715)
+.. ......++.-....|.-+ +|.|-+++||.|...|.|++||+....+. .++.. ....|...+|+. +
T Consensus 291 ~es-----~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~-d 364 (385)
T KOG1034|consen 291 PES-----ATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR-D 364 (385)
T ss_pred Ccc-----ceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc-c
Confidence 000 011112222223344444 56678999999999999999999886653 23322 245688899998 7
Q ss_pred CcEEEEEeCCCcEEEEEC
Q 048801 600 PRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 600 g~lLaSgs~DGtI~VWDl 617 (1715)
+.+|+....|++|.-||.
T Consensus 365 gs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 365 GSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CcEEEEEeCCCcEEEEEe
Confidence 888888999999999985
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-17 Score=208.89 Aligned_cols=294 Identities=18% Similarity=0.284 Sum_probs=215.8
Q ss_pred EEEECCCCC-EEEEE----------eCCCeeEEEECCC--C----CceEEEeCCCCCeEEEEecCCCCcc-eEEEEecCC
Q 048801 290 DLAVSSNNT-LVASA----------SNDFVIRVWRLPD--G----LPISVLRGHTGAVTAIAFSPRPSAI-YQLLSSSDD 351 (1715)
Q Consensus 290 sLafSpDg~-lLASG----------S~DGtIrVWDl~t--g----~~l~~L~gH~~~VtsLafSPdg~~~-~~LaSgS~D 351 (1715)
.++|+|++. +||+| +.+.++-||.+.- . +++..+. -....+.|+|.+.+... -+|+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 468898886 55655 2345566665532 2 2333333 34567899999877531 158889999
Q ss_pred CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCC
Q 048801 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSS 430 (1715)
Q Consensus 352 GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~ 430 (1715)
|.|.+||...-.. ............|.+.|..+.|++.. ++||+|+.||.|.|||+.+.+
T Consensus 90 G~I~ly~p~~~~~-------------------~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~ 150 (1049)
T KOG0307|consen 90 GNIVLYDPASIIA-------------------NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE 150 (1049)
T ss_pred CceEEecchhhcc-------------------CcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC
Confidence 9999999764200 00111233445688899999999965 499999999999999998643
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
. +...- -......|.+|+|+... ...|++++.+|.+.|||++..+.+-
T Consensus 151 t-----P~~~~--~~~~~~eI~~lsWNrkv-------------------------qhILAS~s~sg~~~iWDlr~~~pii 198 (1049)
T KOG0307|consen 151 T-----PFTPG--SQAPPSEIKCLSWNRKV-------------------------SHILASGSPSGRAVIWDLRKKKPII 198 (1049)
T ss_pred C-----CCCCC--CCCCcccceEeccchhh-------------------------hHHhhccCCCCCceeccccCCCccc
Confidence 2 11111 12245689999998754 4689999999999999999643221
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC-EEEEEecCC---eEEEEECCC-CceEEEEec
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR-FVLAAIMDC---RICVWNAVD-GSLVHSLTG 585 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~-~LaTgs~DG---tI~IWDl~s-g~~l~tL~g 585 (1715)
.+. .......+..++|+|++. .|++++.|. .|.+||++. ...++++++
T Consensus 199 ~ls---------------------------~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~ 251 (1049)
T KOG0307|consen 199 KLS---------------------------DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG 251 (1049)
T ss_pred ccc---------------------------cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc
Confidence 110 011113477899999875 556666553 699999876 456788899
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC
Q 048801 586 HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGT-SIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 586 H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~-~LAsgs~DG~I~IWdl~tG 662 (1715)
|...|.+|.|++.|.++|+|++.|+.|.+|+..+|+.+..+......+..+.|+|... .|++++-||.|.|+.+..+
T Consensus 252 H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 252 HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 9999999999999999999999999999999999999999988777899999999766 7888899999999998655
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-16 Score=176.17 Aligned_cols=284 Identities=18% Similarity=0.213 Sum_probs=207.7
Q ss_pred EEEEECCCCCEEEEEeCCCeeEEEECCCC-------Cc-----eEEEe-CCCCCeEEEEecCC----CCcceEEEEecCC
Q 048801 289 TDLAVSSNNTLVASASNDFVIRVWRLPDG-------LP-----ISVLR-GHTGAVTAIAFSPR----PSAIYQLLSSSDD 351 (1715)
Q Consensus 289 tsLafSpDg~lLASGS~DGtIrVWDl~tg-------~~-----l~~L~-gH~~~VtsLafSPd----g~~~~~LaSgS~D 351 (1715)
..+.|||||..|++-+.|..+.+|++... .. ..+++ .....|...+|-+. .+...++++.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 45789999999999999999999998531 11 11111 23456777777531 1122388999999
Q ss_pred CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCC-CCC
Q 048801 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSAC-KSS 430 (1715)
Q Consensus 352 GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~-t~~ 430 (1715)
.-|++||.-+|++...+......+.+ ....|++|+|||..|++|. ...|+|||+. .+.
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~--------------------taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr 191 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEY--------------------TAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGR 191 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhh--------------------hhheeEEecCCCCeEeecc-cceEEEeeccCCCC
Confidence 99999999999876554333222222 1246899999999999875 6899999994 332
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
-..... ....--.+..+-|.+++|+|.. ...++.|+...++-||.-..
T Consensus 192 ~c~vy~--t~~~~k~gq~giisc~a~sP~~-------------------------~~~~a~gsY~q~~giy~~~~----- 239 (406)
T KOG2919|consen 192 DCPVYT--TVTKGKFGQKGIISCFAFSPMD-------------------------SKTLAVGSYGQRVGIYNDDG----- 239 (406)
T ss_pred CCcchh--hhhcccccccceeeeeeccCCC-------------------------CcceeeecccceeeeEecCC-----
Confidence 110000 0011123446788999999965 36889999888888876553
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec-CCeEEEEECCC-CceEEEEecCCC
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM-DCRICVWNAVD-GSLVHSLTGHSA 588 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~-DGtI~IWDl~s-g~~l~tL~gH~~ 588 (1715)
..++..+.+|.++|+.++|.++|+.|++|+. |-.|..||++. +.++..|..|.+
T Consensus 240 ------------------------~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~ 295 (406)
T KOG2919|consen 240 ------------------------RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVG 295 (406)
T ss_pred ------------------------CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhcc
Confidence 3455667789999999999999999999875 66899999975 567778887766
Q ss_pred -CeEEEEE--ccCCCcEEEEEeCCCcEEEEECCC-CceEEEEEcccceEEEEEEcCCCCEEEEEeC
Q 048801 589 -SSYVLDV--HPFNPRIAMSAGYDGRTIVWDIWE-GTPIRIYEIGRFKLVDGKFSPDGTSIVLSDD 650 (1715)
Q Consensus 589 -~V~sLaf--SP~dg~lLaSgs~DGtI~VWDl~t-gk~l~tl~~h~~~V~svafSPDG~~LAsgs~ 650 (1715)
.-..|-| .| .+.+|++|+.||.|++||+.+ |..+..+..+...+..++++|--.++|+++.
T Consensus 296 ~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 296 DTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred CccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 3334444 46 678999999999999999998 7878888878888999999999877777654
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=185.42 Aligned_cols=262 Identities=16% Similarity=0.226 Sum_probs=204.3
Q ss_pred CeEEEEEcCCCCEEEEE--eCCCcEEEEeCCCC--c--EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC
Q 048801 245 AVYCAIFDRSGRFVITG--SDDRLVKIWSMETA--F--CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL 318 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTG--S~DGtIrIWDl~tg--k--~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~ 318 (1715)
.|.++.|..... |+++ +.|..|++|.-... + .+..+.|. .-.|++......|+++|+..++|+|||+....
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl 112 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKL 112 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHH
Confidence 388899987653 4444 46888999974322 1 22223332 34555555566899999999999999999877
Q ss_pred ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCc
Q 048801 319 PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH 398 (1715)
Q Consensus 319 ~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~ 398 (1715)
+.+.+.+|...|+++.+.-... +|++++..|.|.|..+.++.....+..+ .+.
T Consensus 113 ~hr~lkdh~stvt~v~YN~~De---yiAsvs~gGdiiih~~~t~~~tt~f~~~------------------------sgq 165 (673)
T KOG4378|consen 113 IHRFLKDHQSTVTYVDYNNTDE---YIASVSDGGDIIIHGTKTKQKTTTFTID------------------------SGQ 165 (673)
T ss_pred HhhhccCCcceeEEEEecCCcc---eeEEeccCCcEEEEecccCccccceecC------------------------CCC
Confidence 8888999999999999998776 9999999999999999887654443221 133
Q ss_pred ceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccc
Q 048801 399 QILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 399 ~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
.|.-+.|++..+ +|.+++.+|.|.+||+.... ........|..+...|+|+|..
T Consensus 166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~s--------p~~~~~~~HsAP~~gicfspsn----------------- 220 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS--------PIFHASEAHSAPCRGICFSPSN----------------- 220 (673)
T ss_pred eEEEeecccccceeeEeeccCCeEEEEeccCCC--------cccchhhhccCCcCcceecCCc-----------------
Confidence 467899999775 56788999999999997542 2345677899999999999975
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
..+||+.+.|..|.+||+.+.+... ......+.+.++|+++|
T Consensus 221 --------e~l~vsVG~Dkki~~yD~~s~~s~~------------------------------~l~y~~Plstvaf~~~G 262 (673)
T KOG4378|consen 221 --------EALLVSVGYDKKINIYDIRSQASTD------------------------------RLTYSHPLSTVAFSECG 262 (673)
T ss_pred --------cceEEEecccceEEEeecccccccc------------------------------eeeecCCcceeeecCCc
Confidence 4689999999999999998643211 12234567899999999
Q ss_pred CEEEEEecCCeEEEEECCC-CceEEEEecCCCCeEEEEEccCCC
Q 048801 558 RFVLAAIMDCRICVWNAVD-GSLVHSLTGHSASSYVLDVHPFNP 600 (1715)
Q Consensus 558 ~~LaTgs~DGtI~IWDl~s-g~~l~tL~gH~~~V~sLafSP~dg 600 (1715)
.+|++|...|.|+.||++. ..++.++..|...|++|+|-| .+
T Consensus 263 ~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~-s~ 305 (673)
T KOG4378|consen 263 TYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP-SP 305 (673)
T ss_pred eEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeee-cc
Confidence 9999999999999999976 567889999999999999988 44
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.5e-16 Score=180.58 Aligned_cols=305 Identities=16% Similarity=0.206 Sum_probs=209.8
Q ss_pred EEEECCCCCEEEEEeCC---Ce--eEEEECCCCCceEEEeCCC----CCeEEEEecCC----CCcceEEEEecCCCcEEE
Q 048801 290 DLAVSSNNTLVASASND---FV--IRVWRLPDGLPISVLRGHT----GAVTAIAFSPR----PSAIYQLLSSSDDGTCRI 356 (1715)
Q Consensus 290 sLafSpDg~lLASGS~D---Gt--IrVWDl~tg~~l~~L~gH~----~~VtsLafSPd----g~~~~~LaSgS~DGtVrI 356 (1715)
.+.+-|+.++|+++-.+ .. |+||+- ...-. +-.|. ....|++|... +....+++.|+.|..|.|
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~--~e~nl-YvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI 206 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNE--EEENL-YVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI 206 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcC--CCcce-eEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence 45566767777777443 23 444543 22111 11122 23356666543 222348999999999999
Q ss_pred EecCCCC-CcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCC
Q 048801 357 WDARYSQ-YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDS 434 (1715)
Q Consensus 357 WDl~tg~-~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~ 434 (1715)
||+.--. ..+.+.+.......... ..........|...|..++|+..- +.||+|+.|.+|.+||+.+++
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~~~k-----~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~---- 277 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKKKKK-----KGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK---- 277 (463)
T ss_pred eccccccccccceeechhhhhhhhh-----hcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC----
Confidence 9986432 22222221110000000 111223345678888999998754 689999999999999999864
Q ss_pred CCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccc
Q 048801 435 EQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGR 514 (1715)
Q Consensus 435 ~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~ 514 (1715)
+..++..|...|.++.|+|.. +..|++|+.|++|.+.|.+.....+
T Consensus 278 -----p~~s~~~~~k~Vq~l~wh~~~-------------------------p~~LLsGs~D~~V~l~D~R~~~~s~---- 323 (463)
T KOG0270|consen 278 -----PKSSITHHGKKVQTLEWHPYE-------------------------PSVLLSGSYDGTVALKDCRDPSNSG---- 323 (463)
T ss_pred -----cceehhhcCCceeEEEecCCC-------------------------ceEEEeccccceEEeeeccCccccC----
Confidence 466777899999999999975 5799999999999999998411110
Q ss_pred ccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC-EEEEEecCCeEEEEECCCC-ceEEEEecCCCCeEE
Q 048801 515 WTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR-FVLAAIMDCRICVWNAVDG-SLVHSLTGHSASSYV 592 (1715)
Q Consensus 515 ~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~-~LaTgs~DGtI~IWDl~sg-~~l~tL~gH~~~V~s 592 (1715)
..-...+.|..++|.|... .++++..||+|+-+|++.. +++.++.+|.++|.+
T Consensus 324 -------------------------~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISg 378 (463)
T KOG0270|consen 324 -------------------------KEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISG 378 (463)
T ss_pred -------------------------ceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcce
Confidence 0112245788899998654 5667789999999999875 999999999999999
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECCCCce--EEEEEcccceEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccc
Q 048801 593 LDVHPFNPRIAMSAGYDGRTIVWDIWEGTP--IRIYEIGRFKLVDGKFSPDGT-SIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 593 LafSP~dg~lLaSgs~DGtI~VWDl~tgk~--l~tl~~h~~~V~svafSPDG~-~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
|++++..+.+++|++.|+.|++|++..-.+ +..-.-.-+...|.++.|+-. .||+|+..+.++|||+.++...
T Consensus 379 l~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 379 LSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 999998889999999999999999864333 221111122356777888754 5778888889999999887544
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.7e-16 Score=170.97 Aligned_cols=270 Identities=22% Similarity=0.345 Sum_probs=204.0
Q ss_pred CCCcEEEEeCCCCc---EEEEecCCCCCeEEEEECCC-CCEEEEEeCC-------CeeEEEECCCC---------CceEE
Q 048801 263 DDRLVKIWSMETAF---CLASCRGHEGDITDLAVSSN-NTLVASASND-------FVIRVWRLPDG---------LPISV 322 (1715)
Q Consensus 263 ~DGtIrIWDl~tgk---~l~tL~gHs~~VtsLafSpD-g~lLASGS~D-------GtIrVWDl~tg---------~~l~~ 322 (1715)
.|+.|.+..++.+. .-..|..|.+.|..|+-+|- .++|+++..+ ..+.||.+... +++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 36888888776542 23457778999999999994 5666766542 24789988542 33444
Q ss_pred Ee-CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCc-ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 323 LR-GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS-PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 323 L~-gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l-~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
|. .+-+.|.|+.|.|++. .|++-. |..|.+|++..+..+ ..+. ......+....
T Consensus 118 Ldteavg~i~cvew~Pns~---klasm~-dn~i~l~~l~ess~~vaev~--------------------ss~s~e~~~~f 173 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSD---KLASMD-DNNIVLWSLDESSKIVAEVL--------------------SSESAEMRHSF 173 (370)
T ss_pred CCHHHhCceeeEEEcCCCC---eeEEec-cCceEEEEcccCcchheeec--------------------cccccccccee
Confidence 54 4567899999999886 566655 888999999876542 1111 11112245668
Q ss_pred eEEEEcc--CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccc
Q 048801 401 LCCAYNA--NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 401 tslafSp--dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
++-+|+| +|+.+++. .|+++..||+++.+. ....-.+|...|..+.|+|+.
T Consensus 174 tsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~--------~~sI~dAHgq~vrdlDfNpnk------------------ 226 (370)
T KOG1007|consen 174 TSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKK--------NNSIEDAHGQRVRDLDFNPNK------------------ 226 (370)
T ss_pred cccccCCCCccceEEEe-CCCcEEEEEccchhh--------hcchhhhhcceeeeccCCCCc------------------
Confidence 8899998 78888876 479999999997532 223446788899999999986
Q ss_pred ccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC-C
Q 048801 479 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD-N 557 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD-G 557 (1715)
+.+|++|+.||.|+|||.+.. ..++..+.+|...|.++.|+|. .
T Consensus 227 -------q~~lvt~gDdgyvriWD~R~t----------------------------k~pv~el~~HsHWvW~VRfn~~hd 271 (370)
T KOG1007|consen 227 -------QHILVTCGDDGYVRIWDTRKT----------------------------KFPVQELPGHSHWVWAVRFNPEHD 271 (370)
T ss_pred -------eEEEEEcCCCccEEEEeccCC----------------------------CccccccCCCceEEEEEEecCccc
Confidence 478999999999999999852 2456778899999999999984 5
Q ss_pred CEEEEEecCCeEEEEECCCC-----------------------------ceEEEEecCCCCeEEEEEccCCCcEEEEEeC
Q 048801 558 RFVLAAIMDCRICVWNAVDG-----------------------------SLVHSLTGHSASSYVLDVHPFNPRIAMSAGY 608 (1715)
Q Consensus 558 ~~LaTgs~DGtI~IWDl~sg-----------------------------~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~ 608 (1715)
++|++|+.|..|.+|...+- ..+.++..|...|++++|+.-++.++|+-++
T Consensus 272 qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY 351 (370)
T KOG1007|consen 272 QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY 351 (370)
T ss_pred eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc
Confidence 67889999999999976431 1345677899999999999999999999999
Q ss_pred CCcEEEEECC
Q 048801 609 DGRTIVWDIW 618 (1715)
Q Consensus 609 DGtI~VWDl~ 618 (1715)
||++.|=.+.
T Consensus 352 DGRviIs~V~ 361 (370)
T KOG1007|consen 352 DGRVIISSVP 361 (370)
T ss_pred CceEEeecCC
Confidence 9999987663
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.4e-16 Score=173.53 Aligned_cols=281 Identities=18% Similarity=0.354 Sum_probs=200.6
Q ss_pred CCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCeeEEEECC
Q 048801 241 GHRDAVYCAIFDRS----GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNN-TLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 241 GH~~~Vt~VafSpD----G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg-~lLASGS~DGtIrVWDl~ 315 (1715)
.|....+.++|+-| ..+||.||.-|.|+|.|+.++++...+.+|...|+.|.|.|+. ++|++||.|.+|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 47888899999754 3489999999999999999999999999999999999999975 799999999999999999
Q ss_pred CCCceEEE---eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCC--CCCccCccCCCCCCCC-
Q 048801 316 DGLPISVL---RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKP--PDAITGKSNVPSNNGP- 389 (1715)
Q Consensus 316 tg~~l~~L---~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~--~~~i~g~~~~~~~~~~- 389 (1715)
+..++..+ .||.+.|.++.|++++. +|++++.|..|++|++...+....+....+ +.........+....+
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd---~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGD---RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCC---eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 99999987 47999999999999998 899999999999999985543322211100 0000000000000011
Q ss_pred CCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCC-c-c---CCCCCceeeeeecCCCCCeeEEEEccCccccc
Q 048801 390 SSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSS-V-E---DSEQPIHELDVLSGHENDVNYVQFSGCAVASR 464 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~-~-~---~~~~~~~~l~~l~gH~~~V~sLafspdg~as~ 464 (1715)
......|...|.|+.|- |.++++-+-++.|..|....-. . . ........+..+.-....|.-+.|.-+.
T Consensus 244 fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~---- 317 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP---- 317 (385)
T ss_pred ccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH----
Confidence 12455678888888886 4789998889999999873111 0 0 0001112223334444556666654332
Q ss_pred ccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCC
Q 048801 465 SAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPT 544 (1715)
Q Consensus 465 ~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h 544 (1715)
..+.||.|...|.|.+||++...... .....-...
T Consensus 318 --------------------~~~~la~gnq~g~v~vwdL~~~ep~~-------------------------~ttl~~s~~ 352 (385)
T KOG1034|consen 318 --------------------WQKMLALGNQSGKVYVWDLDNNEPPK-------------------------CTTLTHSKS 352 (385)
T ss_pred --------------------HHHHHhhccCCCcEEEEECCCCCCcc-------------------------CceEEeccc
Confidence 14789999999999999998633110 001111122
Q ss_pred CCCeeEEEeCCCCCEEEEEecCCeEEEEECC
Q 048801 545 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAV 575 (1715)
Q Consensus 545 ~~~VtslafSPDG~~LaTgs~DGtI~IWDl~ 575 (1715)
...|+..+||.||.+|+..+.|++|.-||..
T Consensus 353 ~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 353 GSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 4468999999999999999999999999853
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-16 Score=186.79 Aligned_cols=271 Identities=25% Similarity=0.303 Sum_probs=194.9
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC--------CcEEEEecCCCCCeEEEEECCCCCEEEEEe
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET--------AFCLASCRGHEGDITDLAVSSNNTLVASAS 304 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~t--------gk~l~tL~gHs~~VtsLafSpDg~lLASGS 304 (1715)
...-.++..|.+.|++++|.+....|++|+.||+|++|+++. -+.+.+|++|.++|.|+++.+++..+++|+
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 344458899999999999999999999999999999999932 257889999999999999999999999999
Q ss_pred CCCeeEEEECCCC----------CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCC
Q 048801 305 NDFVIRVWRLPDG----------LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPP 374 (1715)
Q Consensus 305 ~DGtIrVWDl~tg----------~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~ 374 (1715)
.||+|+.|++... ....++.||.+.|+.+++++... .|++++.||+|++|+...... .++..+.
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~---~Llscs~DgTvr~w~~~~~~~-~~f~~~~-- 437 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD---RLLSCSSDGTVRLWEPTEESP-CTFGEPK-- 437 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc---ceeeecCCceEEeeccCCcCc-cccCCcc--
Confidence 9999999976421 23456789999999999999876 799999999999998765432 1111100
Q ss_pred CCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeE
Q 048801 375 DAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNY 453 (1715)
Q Consensus 375 ~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~s 453 (1715)
....-+++.|-... ...+ .+.....+++.+.. .+..
T Consensus 438 ---------------------e~g~Plsvd~~ss~~a~~~---~s~~~~~~~~~~~e-------------------v~s~ 474 (577)
T KOG0642|consen 438 ---------------------EHGYPLSVDRTSSRPAHSL---ASFRFGYTSIDDME-------------------VVSD 474 (577)
T ss_pred ---------------------ccCCcceEeeccchhHhhh---hhcccccccchhhh-------------------hhhh
Confidence 01112233332111 1111 11122222221100 0000
Q ss_pred EEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCC
Q 048801 454 VQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPP 533 (1715)
Q Consensus 454 Lafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 533 (1715)
+.+.+. +.++.
T Consensus 475 ~~~~~s---------------------------------~~~~~------------------------------------ 485 (577)
T KOG0642|consen 475 LLIFES---------------------------------SASPG------------------------------------ 485 (577)
T ss_pred eeeccc---------------------------------cCCCc------------------------------------
Confidence 001000 00000
Q ss_pred CCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 048801 534 RGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTI 613 (1715)
Q Consensus 534 ~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~ 613 (1715)
......++.+.+.|.+.+.+++..|+.|+++|..++.+++....|...++++++.| ++-+|++++.||.|+
T Consensus 486 --------~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~ 556 (577)
T KOG0642|consen 486 --------PRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVR 556 (577)
T ss_pred --------ccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecC-CCceEEeecCCceee
Confidence 00123466788899999999999999999999999999999999999999999999 778889999999999
Q ss_pred EEECCCCceEEEEEccc
Q 048801 614 VWDIWEGTPIRIYEIGR 630 (1715)
Q Consensus 614 VWDl~tgk~l~tl~~h~ 630 (1715)
+|.+....++.....|+
T Consensus 557 l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 557 LWKLDVKTCVLESTAHR 573 (577)
T ss_pred hhhccchheeecccccc
Confidence 99998777776655443
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=179.95 Aligned_cols=181 Identities=25% Similarity=0.384 Sum_probs=142.8
Q ss_pred cccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEe-cCCCCCeEEEEECC--CCCEEEEEeCC
Q 048801 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASC-RGHEGDITDLAVSS--NNTLVASASND 306 (1715)
Q Consensus 230 ~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL-~gHs~~VtsLafSp--Dg~lLASGS~D 306 (1715)
+..+.+-+.|.||++.|+|++|+.+|.+||+||+|-.|.|||.-..++++.+ +||...|.++.|-| ++++|++|..|
T Consensus 37 lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 37 LRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred HhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence 3445667789999999999999999999999999999999999888887776 68999999999998 56799999999
Q ss_pred CeeEEEECCC----------CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCC
Q 048801 307 FVIRVWRLPD----------GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDA 376 (1715)
Q Consensus 307 GtIrVWDl~t----------g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~ 376 (1715)
..|+|+|+.. ......+..|...|..|+..|+++. .+.+++.||+|+-+|++.......- ...
T Consensus 117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph--tfwsasEDGtirQyDiREph~c~p~-----~~~ 189 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH--TFWSASEDGTIRQYDIREPHVCNPD-----EDC 189 (758)
T ss_pred ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc--eEEEecCCcceeeecccCCccCCcc-----ccc
Confidence 9999999974 2345566789999999999999865 7999999999999999864321110 000
Q ss_pred ccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCC
Q 048801 377 ITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 377 i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~ 427 (1715)
. .........--...|+.++|.. .+|++|+.|-.+++||.+
T Consensus 190 ~----------~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 190 P----------SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred c----------HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 0 0000011112346899999954 689999999999999954
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-15 Score=165.81 Aligned_cols=275 Identities=19% Similarity=0.264 Sum_probs=200.8
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCC--------Cc----EEEEecC-CCCCeEEEEEC-------CCCCEEEEEeCCC
Q 048801 248 CAIFDRSGRFVITGSDDRLVKIWSMET--------AF----CLASCRG-HEGDITDLAVS-------SNNTLVASASNDF 307 (1715)
Q Consensus 248 ~VafSpDG~~LaTGS~DGtIrIWDl~t--------gk----~l~tL~g-Hs~~VtsLafS-------pDg~lLASGS~DG 307 (1715)
.+.|+|||..|++-+.|..+.+|++-. +. ...+++- ....|...+|- |+..++|+.+.+.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 466999999999999999999998731 11 1111221 23457777774 5778999999999
Q ss_pred eeEEEECCCCCceEEEeC--CCC---CeEEEEecCCCCcceEEEEecCCCcEEEEec-CCCCCcceecCCCCCCCccCcc
Q 048801 308 VIRVWRLPDGLPISVLRG--HTG---AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA-RYSQYSPRIYLPKPPDAITGKS 381 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~g--H~~---~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl-~tg~~l~~i~~~~~~~~i~g~~ 381 (1715)
-|++||.-+|+....+.+ |.. ...+|+|+|||. +|++ +....|+++|+ +.|.........
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe---qlfa-GykrcirvFdt~RpGr~c~vy~t~---------- 199 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE---QLFA-GYKRCIRVFDTSRPGRDCPVYTTV---------- 199 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC---eEee-cccceEEEeeccCCCCCCcchhhh----------
Confidence 999999999998877753 333 456899999997 5554 55678999999 555433222110
Q ss_pred CCCCCCCCCCCCCCCCcceeEEEEccC-CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCc
Q 048801 382 NVPSNNGPSSSNGLQSHQILCCAYNAN-GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 382 ~~~~~~~~~~~~~~h~~~VtslafSpd-G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg 460 (1715)
.....+..+-|.|++|+|- ...+++|+....+-||.-... .++..+.+|.+.|+.++|.++|
T Consensus 200 --------~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~---------~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 200 --------TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR---------RPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred --------hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC---------CceeeecccCCCeeeEEeccCc
Confidence 0111233556899999995 458999998888888876553 3577788999999999999997
Q ss_pred ccccccccccccccccccccCCcccCceEEEEc-CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcc
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQ 539 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~ 539 (1715)
+.|.+|+ .|-.|.+||++... .++.
T Consensus 263 --------------------------n~lfsGaRk~dkIl~WDiR~~~----------------------------~pv~ 288 (406)
T KOG2919|consen 263 --------------------------NKLFSGARKDDKILCWDIRYSR----------------------------DPVY 288 (406)
T ss_pred --------------------------CeecccccCCCeEEEEeehhcc----------------------------chhh
Confidence 5677766 47899999998522 1222
Q ss_pred cccCCCC---CeeEEEeCCCCCEEEEEecCCeEEEEECCC-CceEEEEecCCCCeEEEEEccCCCcEEEEEeC
Q 048801 540 RLLPTPR---GVNMIVWSLDNRFVLAAIMDCRICVWNAVD-GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGY 608 (1715)
Q Consensus 540 ~l~~h~~---~VtslafSPDG~~LaTgs~DGtI~IWDl~s-g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~ 608 (1715)
.+..|.. .-.-....|+|++|++|+.||.|++||+.+ |..+..+..|...|+.++++| --.++++++.
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP-~mpilatssG 360 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNP-IMPILATSSG 360 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCc-ccceeeeccC
Confidence 2222322 112345568999999999999999999998 777888999999999999999 4567766653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-15 Score=180.63 Aligned_cols=277 Identities=15% Similarity=0.195 Sum_probs=214.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcc
Q 048801 287 DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSP 366 (1715)
Q Consensus 287 ~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~ 366 (1715)
.|..++|-|||..|+.+..+ .+.|||..+|..+.++++|...|+|++|+.+|. .+++|+.|..|.+|.-.-...
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGk---rFASG~aDK~VI~W~~klEG~-- 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK---RFASGSADKSVIIWTSKLEGI-- 87 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCc---eeccCCCceeEEEecccccce--
Confidence 79999999999988777544 799999999999999999999999999999998 899999999999997532111
Q ss_pred eecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecC
Q 048801 367 RIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG 446 (1715)
Q Consensus 367 ~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g 446 (1715)
....|+..|.|+.|+|-...|++++- ...-+|......+ .. ..
T Consensus 88 -------------------------LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V----------~K-~k 130 (1081)
T KOG1538|consen 88 -------------------------LKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSV----------SK-HK 130 (1081)
T ss_pred -------------------------eeeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhH----------Hh-hh
Confidence 12346788999999999999998875 3456887754221 11 11
Q ss_pred CCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCC
Q 048801 447 HENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPP 526 (1715)
Q Consensus 447 H~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~ 526 (1715)
....|.+.+|..+| .+|+.|-.+|+|.|-+-....
T Consensus 131 ss~R~~~CsWtnDG--------------------------qylalG~~nGTIsiRNk~gEe------------------- 165 (1081)
T KOG1538|consen 131 SSSRIICCSWTNDG--------------------------QYLALGMFNGTISIRNKNGEE------------------- 165 (1081)
T ss_pred hheeEEEeeecCCC--------------------------cEEEEeccCceEEeecCCCCc-------------------
Confidence 23468889999887 799999999999997433210
Q ss_pred CCCCCCCCCCCcccccCCCCCeeEEEeCCCC-----CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCc
Q 048801 527 PLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN-----RFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPR 601 (1715)
Q Consensus 527 ~~~~~~~~g~~~~~l~~h~~~VtslafSPDG-----~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~ 601 (1715)
...+.+--+...+|.+++|+|.. ..+++.....++.++.+ +|+.+..-+.-.-.-.|+.+.+ +|.
T Consensus 166 --------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~-NGE 235 (1081)
T KOG1538|consen 166 --------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFT-NGE 235 (1081)
T ss_pred --------ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheecc-CCc
Confidence 11122333456789999999853 47888888888888886 4555553333333446888888 777
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 602 IAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 602 lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
+++.||.|+.+.+|. +.|-.+.++-.....|+.++..|++++++.|+.||+|-.|++...
T Consensus 236 y~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 236 YILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred EEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 888899999999997 578888888766778999999999999999999999999998543
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=172.15 Aligned_cols=281 Identities=17% Similarity=0.273 Sum_probs=207.5
Q ss_pred CEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCc
Q 048801 298 TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAI 377 (1715)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i 377 (1715)
..+|++...|.|++||..++..+..+.++...++.+.|..... ...+.+|+.||+|++||++......++.....+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds-~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~--- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDS-PHGVISCSSDGTVRLWDIRSQAESARISWTQQS--- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCC-CCeeEEeccCCeEEEEEeecchhhhheeccCCC---
Confidence 5788888999999999999999999999999999999987531 127899999999999999987765554332111
Q ss_pred cCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC----CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeE
Q 048801 378 TGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS----DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNY 453 (1715)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~----DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~s 453 (1715)
+....|++.+..++.+++|+. +..|.+||++..+. + .-.....|.+.|++
T Consensus 117 -------------------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq-----~--l~~~~eSH~DDVT~ 170 (376)
T KOG1188|consen 117 -------------------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ-----L--LRQLNESHNDDVTQ 170 (376)
T ss_pred -------------------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccc-----h--hhhhhhhccCccee
Confidence 345778888888889998863 67899999987531 1 12345689999999
Q ss_pred EEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCC
Q 048801 454 VQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPP 533 (1715)
Q Consensus 454 Lafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 533 (1715)
|.|+|.. ++.|++|+.||.|.|||+... .
T Consensus 171 lrFHP~~-------------------------pnlLlSGSvDGLvnlfD~~~d--------------------------~ 199 (376)
T KOG1188|consen 171 LRFHPSD-------------------------PNLLLSGSVDGLVNLFDTKKD--------------------------N 199 (376)
T ss_pred EEecCCC-------------------------CCeEEeecccceEEeeecCCC--------------------------c
Confidence 9999976 689999999999999998741 1
Q ss_pred CCCCcccccCCCCCeeEEEeCCCC-CEEEEEecCCeEEEEECCCCceEEEEecCC----------CCeEEEE-EccCCCc
Q 048801 534 RGGPRQRLLPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAVDGSLVHSLTGHS----------ASSYVLD-VHPFNPR 601 (1715)
Q Consensus 534 ~g~~~~~l~~h~~~VtslafSPDG-~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~----------~~V~sLa-fSP~dg~ 601 (1715)
....+.....+...|.++.|..++ +.|.+-+...+..+|++..+.....+.... .--+-|. .+|-+..
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 223445566778889999999877 458888889999999999887655443210 0001121 2354555
Q ss_pred EEEEEeC-CCcEEEEEC---CC---CceEEEEEcccc-eEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 602 IAMSAGY-DGRTIVWDI---WE---GTPIRIYEIGRF-KLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 602 lLaSgs~-DGtI~VWDl---~t---gk~l~tl~~h~~-~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
+++.++. -|...++-+ .+ ++.+..+.+++. -|.++.|...+..|.+|++||.|.+|..
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 5555554 455555433 22 456667776444 4668889889999999999999999996
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.6e-15 Score=171.34 Aligned_cols=292 Identities=19% Similarity=0.219 Sum_probs=196.6
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC--------C--------CcEEEEecCCCCCeEEEEECC
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSME--------T--------AFCLASCRGHEGDITDLAVSS 295 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~--------t--------gk~l~tL~gHs~~VtsLafSp 295 (1715)
+.+.+..|.+|..+|++|.|+|+|.+||+|+++|.|.+|... + ......+.+|...|..++|++
T Consensus 54 ~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 54 KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence 456678899999999999999999999999999999999765 2 234567889999999999999
Q ss_pred CCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCC
Q 048801 296 NNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPD 375 (1715)
Q Consensus 296 Dg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~ 375 (1715)
++.++++|+.|.++++||+..|..+..+..|...|..++|.|.+. ++++-+.|...+.+.+...+.+..+.......
T Consensus 134 d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q---yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~ 210 (434)
T KOG1009|consen 134 DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ---YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPA 210 (434)
T ss_pred CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhh---hhhhhccCcccceeeeeeeeeeeeeeeeEeee
Confidence 999999999999999999999999999999999999999999987 88999999888888776655444332111000
Q ss_pred CccCccCCCCCCCCCCCCCCCC----cceeEEEEccCCCeEEEecC----CCeE-----EEEeCCCCCccCCCCCceeee
Q 048801 376 AITGKSNVPSNNGPSSSNGLQS----HQILCCAYNANGTVFVTGSS----DTFA-----RVWSACKSSVEDSEQPIHELD 442 (1715)
Q Consensus 376 ~i~g~~~~~~~~~~~~~~~~h~----~~VtslafSpdG~~LatGs~----DG~I-----rVWDl~t~~~~~~~~~~~~l~ 442 (1715)
.. +. ..........|. .-...++|+|+|.+|++... .+.+ ++|+-.. ...++.
T Consensus 211 ~~-~~-----~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~--------l~rP~~ 276 (434)
T KOG1009|consen 211 KA-FN-----EREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKD--------LKRPAA 276 (434)
T ss_pred cc-cC-----CCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccc--------ccCcee
Confidence 00 00 000001111122 22567899999999998652 1111 2222110 011222
Q ss_pred eecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccccccc
Q 048801 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLK 522 (1715)
Q Consensus 443 ~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~ 522 (1715)
.+.....++..+.|+| ..|.++.-.
T Consensus 277 ~lp~~~k~~lavr~~p----------------------------------------Vy~elrp~~--------------- 301 (434)
T KOG1009|consen 277 RLPSPKKPALAVRFSP----------------------------------------VYYELRPLS--------------- 301 (434)
T ss_pred ecCCCCcceEEEEeee----------------------------------------eEEEecccc---------------
Confidence 2333333333333333 112221100
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCeeEEEeC-CCCCEEEEEecCCeEEEEECCCCceEEEEe-cCCCCeEEEEEccCCC
Q 048801 523 VPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS-LDNRFVLAAIMDCRICVWNAVDGSLVHSLT-GHSASSYVLDVHPFNP 600 (1715)
Q Consensus 523 ~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS-PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~-gH~~~V~sLafSP~dg 600 (1715)
....-|+ |-+-.+|+++ ...|+|||..+..++.... -|-..++.++|++ ++
T Consensus 302 -------------------------~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~-dg 354 (434)
T KOG1009|consen 302 -------------------------SEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD-DG 354 (434)
T ss_pred -------------------------ccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecC-CC
Confidence 0000111 3333445555 4589999999988877664 5889999999999 77
Q ss_pred cEEEEEeCCCcEEEEECCCCce
Q 048801 601 RIAMSAGYDGRTIVWDIWEGTP 622 (1715)
Q Consensus 601 ~lLaSgs~DGtI~VWDl~tgk~ 622 (1715)
..|+..+.||..-+-.+...++
T Consensus 355 ~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 355 SVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred cEEEEeccCCceEEEEEcchhc
Confidence 7777889999887777655443
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.9e-15 Score=183.39 Aligned_cols=285 Identities=18% Similarity=0.236 Sum_probs=209.9
Q ss_pred CeeEEEECCCC-CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 307 FVIRVWRLPDG-LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 307 GtIrVWDl~tg-~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
+.+.||++.+. .+-..+. -...|+|+.|+|.... +|+.|+.+|.|.+||++.+.....
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~--ll~gG~y~GqV~lWD~~~~~~~~~------------------ 280 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPN--LLAGGCYNGQVVLWDLRKGSDTPP------------------ 280 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcc--eEEeeccCceEEEEEccCCCCCCC------------------
Confidence 47999999876 4444454 5678999999998875 789999999999999987764221
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCC--eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec------CCCCCeeEEEEc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGT--VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS------GHENDVNYVQFS 457 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~--~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~------gH~~~V~sLafs 457 (1715)
.........|...++.+.|..+.. -|++++.||.|..|+++.-....... +..... .....++++.|.
T Consensus 281 -s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~---~~~~~~~~~~~~~~~~~~t~~~F~ 356 (555)
T KOG1587|consen 281 -SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGL---LLESKKHKGQQSSKAVGATSLKFE 356 (555)
T ss_pred -cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhc---ccccccccccccccccceeeEeec
Confidence 111233455778899999976543 48999999999999887543211111 111111 223467788887
Q ss_pred cCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC
Q 048801 458 GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537 (1715)
Q Consensus 458 pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 537 (1715)
+.. ...|+.|+.+|.|..-+-...+.. . ......
T Consensus 357 ~~~-------------------------p~~FiVGTe~G~v~~~~r~g~~~~---------~------------~~~~~~ 390 (555)
T KOG1587|consen 357 PTD-------------------------PNHFIVGTEEGKVYKGCRKGYTPA---------P------------EVSYKG 390 (555)
T ss_pred cCC-------------------------CceEEEEcCCcEEEEEeccCCccc---------c------------cccccc
Confidence 754 578999999999877332211100 0 011123
Q ss_pred cccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECC-CCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV-DGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 538 ~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~-sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
......|.+.|+++.++|-+..++..+.|.+|+||... ...++..+..+...|++++|||..+.+++++..||.|.|||
T Consensus 391 ~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 391 HSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD 470 (555)
T ss_pred cccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence 44567789999999999988877766669999999988 77788888888888999999998889999999999999999
Q ss_pred CCC--CceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 617 IWE--GTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 617 l~t--gk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
+.. ..++.+...+......+.|++.|+.|++|+..|.+++|++...
T Consensus 471 Ll~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 471 LLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred hhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 964 3556666555555667899999999999999999999999654
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=171.48 Aligned_cols=287 Identities=13% Similarity=0.156 Sum_probs=197.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECC--CCCEEEEEeCCCeeEEEECCCCCceEEE--eCCC-CCe
Q 048801 256 RFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS--NNTLVASASNDFVIRVWRLPDGLPISVL--RGHT-GAV 330 (1715)
Q Consensus 256 ~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSp--Dg~lLASGS~DGtIrVWDl~tg~~l~~L--~gH~-~~V 330 (1715)
..+|++-..|.|+|||..+++.+..+++|...+..+.|.. ....|.+|+.||+|++||++.......+ ..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888999999999999999999999999999999987 4578999999999999999887655444 4455 456
Q ss_pred EEEEecCCCCcceEEEEec----CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEc
Q 048801 331 TAIAFSPRPSAIYQLLSSS----DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYN 406 (1715)
Q Consensus 331 tsLafSPdg~~~~~LaSgS----~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafS 406 (1715)
.|++..-... .+++|. .+..|.+||++..+... ......|...|+++.|+
T Consensus 121 ~~ld~nck~~---ii~~GtE~~~s~A~v~lwDvR~~qq~l-----------------------~~~~eSH~DDVT~lrFH 174 (376)
T KOG1188|consen 121 ICLDLNCKKN---IIACGTELTRSDASVVLWDVRSEQQLL-----------------------RQLNESHNDDVTQLRFH 174 (376)
T ss_pred eEeeccCcCC---eEEeccccccCceEEEEEEeccccchh-----------------------hhhhhhccCcceeEEec
Confidence 6777664544 566654 36789999998766421 12234578889999999
Q ss_pred cC-CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCccc
Q 048801 407 AN-GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFC 485 (1715)
Q Consensus 407 pd-G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~ 485 (1715)
|. .++|++|+.||.|.|||+....- ...+...-.|...|.++.|...+
T Consensus 175 P~~pnlLlSGSvDGLvnlfD~~~d~E------eDaL~~viN~~sSI~~igw~~~~------------------------- 223 (376)
T KOG1188|consen 175 PSDPNLLLSGSVDGLVNLFDTKKDNE------EDALLHVINHGSSIHLIGWLSKK------------------------- 223 (376)
T ss_pred CCCCCeEEeecccceEEeeecCCCcc------hhhHHHhhcccceeeeeeeecCC-------------------------
Confidence 95 58999999999999999975421 11233334577789999999876
Q ss_pred CceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec
Q 048801 486 HDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM 565 (1715)
Q Consensus 486 ~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~ 565 (1715)
.+.|.+-+..++..+|++..+............ .........-..-|.+.. ..+..+.++++.
T Consensus 224 ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~----------------~~d~r~~~~~dY~I~~~~-~~~~~~~~l~g~ 286 (376)
T KOG1188|consen 224 YKRIMCLTHMETFAIYELEDGSEETWLENPDVS----------------ADDLRKEDNCDYVINEHS-PGDKDTCALAGT 286 (376)
T ss_pred cceEEEEEccCceeEEEccCCChhhcccCccch----------------hhhHHhhhhhhheeeccc-CCCcceEEEecc
Confidence 368999999999999999876532221110000 000000011111122221 123444444444
Q ss_pred -CCeEEEEECC---C---CceEEEEec-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 566 -DCRICVWNAV---D---GSLVHSLTG-HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 566 -DGtI~IWDl~---s---g~~l~tL~g-H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
-+...++-+. + ++.+..+.+ |..-|.++.|.. .+.++.|||.||.+.+|..
T Consensus 287 ~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~-~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 287 DSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV-KNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhc-ccceeeccCCCceEEEEec
Confidence 4555554432 2 345566666 677788888865 6789999999999999986
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=166.81 Aligned_cols=304 Identities=14% Similarity=0.168 Sum_probs=204.9
Q ss_pred EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe-CCCCCeEEEEecCCCCcceEEEEecCCCcEE
Q 048801 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR-GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 277 ~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~-gH~~~VtsLafSPdg~~~~~LaSgS~DGtVr 355 (1715)
+...|++|.+.|+++.|-.+++ |.+|..-|.|++|++.+...+..++ .|...|+.+...|++ .|.+-+.|+.+.
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d----~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND----SLDTQGRDPLLI 80 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc----chhhcCCCceEE
Confidence 4567889999999999988775 8899999999999999998888888 577889999999985 589999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC-eEEEEeCCCCCc---
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT-FARVWSACKSSV--- 431 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG-~IrVWDl~t~~~--- 431 (1715)
+|++..+..+..-.. .+.++.|++-. ++..+... .+..|+-+....
T Consensus 81 lw~ia~s~~i~i~Si----------------------------~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~h~ 130 (323)
T KOG0322|consen 81 LWTIAYSAFISIHSI----------------------------VVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDETHK 130 (323)
T ss_pred EEEccCcceEEEeee----------------------------eccccccccce--eccCCCcchhheecCCcccchhhh
Confidence 999987554332211 12222222210 11111100 111111110000
Q ss_pred cCCCCCceeee----eecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCc
Q 048801 432 EDSEQPIHELD----VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 507 (1715)
Q Consensus 432 ~~~~~~~~~l~----~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~ 507 (1715)
.+...+ ..+. .-.+..+.+.|..+.-.- -..-.++.|..+|.+.+||+.++.
T Consensus 131 ~D~g~~-tqv~i~dd~~~~Klgsvmc~~~~~~c-----------------------~s~~lllaGyEsghvv~wd~S~~~ 186 (323)
T KOG0322|consen 131 QDGGDT-TQVQIADDSERSKLGSVMCQDKDHAC-----------------------GSTFLLLAGYESGHVVIWDLSTGD 186 (323)
T ss_pred hccCcc-ceeEccCchhccccCceeeeeccccc-----------------------cceEEEEEeccCCeEEEEEccCCc
Confidence 000000 0000 001222344444322110 012467889999999999999753
Q ss_pred cCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC--Cce--EEEE
Q 048801 508 SHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD--GSL--VHSL 583 (1715)
Q Consensus 508 ~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s--g~~--l~tL 583 (1715)
..-.+. ...........|..+|.++.|.+.-..=++|+.+..+..|++.. +.+ ...+
T Consensus 187 ~~~~~~-------------------~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~ 247 (323)
T KOG0322|consen 187 KIIQLP-------------------QSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI 247 (323)
T ss_pred eeeccc-------------------cccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence 221110 01122334556888999999987666667788888888998854 222 2223
Q ss_pred ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 584 TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 584 ~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
.-....|..+..-| |++++||+|.||+|+||+.++..+++.+..|.+.|.+++|+||...+|+++.|++|.+|++
T Consensus 248 ~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 248 TLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 33345578888989 8899999999999999999999999999999999999999999999999999999999986
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.9e-15 Score=164.21 Aligned_cols=279 Identities=20% Similarity=0.273 Sum_probs=196.9
Q ss_pred EEEcCCCCCeEEEEEcC-CCCEEEEEeCC-------CcEEEEeCCC---------CcEEEEec-CCCCCeEEEEECCCCC
Q 048801 237 KKLRGHRDAVYCAIFDR-SGRFVITGSDD-------RLVKIWSMET---------AFCLASCR-GHEGDITDLAVSSNNT 298 (1715)
Q Consensus 237 ~~L~GH~~~Vt~VafSp-DG~~LaTGS~D-------GtIrIWDl~t---------gk~l~tL~-gHs~~VtsLafSpDg~ 298 (1715)
+.|..|.+.|..++-+| +.++|+|+-.+ ..+.||.+.. .+++..|. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 45778999999999999 45566666432 2478998743 23444454 4667999999999999
Q ss_pred EEEEEeCCCeeEEEECCCCCc-eEEEe-----CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCC
Q 048801 299 LVASASNDFVIRVWRLPDGLP-ISVLR-----GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPK 372 (1715)
Q Consensus 299 lLASGS~DGtIrVWDl~tg~~-l~~L~-----gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~ 372 (1715)
.||+-. |..|.+|++..+.. ++.+. +|....++-+|+|.... ..+....|+++..||+++......+
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg--nqv~tt~d~tl~~~D~RT~~~~~sI---- 209 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG--NQVATTSDSTLQFWDLRTMKKNNSI---- 209 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc--ceEEEeCCCcEEEEEccchhhhcch----
Confidence 998876 78999999988765 44432 35667888899995432 2344556899999999977644332
Q ss_pred CCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCe
Q 048801 373 PPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDV 451 (1715)
Q Consensus 373 ~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V 451 (1715)
...|...|..+.|+|+.+ +||+|+.||.|+|||.+.. ..++..+.+|...|
T Consensus 210 --------------------~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--------k~pv~el~~HsHWv 261 (370)
T KOG1007|consen 210 --------------------EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--------KFPVQELPGHSHWV 261 (370)
T ss_pred --------------------hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--------CccccccCCCceEE
Confidence 345677899999999875 6889999999999999864 34678899999999
Q ss_pred eEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCC
Q 048801 452 NYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531 (1715)
Q Consensus 452 ~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~ 531 (1715)
.++.|+|.. ..+|++|+.|..|.+|...+-.....+..-................
T Consensus 262 W~VRfn~~h-------------------------dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~k 316 (370)
T KOG1007|consen 262 WAVRFNPEH-------------------------DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVK 316 (370)
T ss_pred EEEEecCcc-------------------------ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcc
Confidence 999999965 5789999999999999765422111110000000000000000111
Q ss_pred CCCCCCcccccCCCCCeeEEEeCCCCCE-EEEEecCCeEEEEECC
Q 048801 532 PPRGGPRQRLLPTPRGVNMIVWSLDNRF-VLAAIMDCRICVWNAV 575 (1715)
Q Consensus 532 ~~~g~~~~~l~~h~~~VtslafSPDG~~-LaTgs~DGtI~IWDl~ 575 (1715)
+...+.+.++..|...|.+++||.-..+ +|+-+.||++.|=.+.
T Consensus 317 pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 317 PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 2344566778899999999999986665 5667889999886653
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-13 Score=172.44 Aligned_cols=280 Identities=23% Similarity=0.328 Sum_probs=182.8
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCC---CEEEEEeCCCeeEEEECC
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNN---TLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg---~lLASGS~DGtIrVWDl~ 315 (1715)
|-|-...-..-.|++|+++++.... ..|+||.+.||.++..+.+|..+++.+.+.|.. .++++++.||.|++||..
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred eccccceecccccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 3333333344569999999987764 589999999999999999999999999998854 477899999999999999
Q ss_pred CCCceEEEeCCCCCeEEEEecCCCCcceEEE-EecCC------------CcEEEEecCCC-----CCcceecCCCC----
Q 048801 316 DGLPISVLRGHTGAVTAIAFSPRPSAIYQLL-SSSDD------------GTCRIWDARYS-----QYSPRIYLPKP---- 373 (1715)
Q Consensus 316 tg~~l~~L~gH~~~VtsLafSPdg~~~~~La-SgS~D------------GtVrIWDl~tg-----~~l~~i~~~~~---- 373 (1715)
.+..+.++..+ ..+..+.+.|..-....++ .+..| +.++-+.+.+. ........+..
T Consensus 91 ~~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~ 169 (792)
T KOG1963|consen 91 DGELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDN 169 (792)
T ss_pred CcEEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEc
Confidence 99988888643 3344444422110000111 11111 11111111110 00000000000
Q ss_pred -CCCccC------c--cCCC---CCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceee
Q 048801 374 -PDAITG------K--SNVP---SNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHEL 441 (1715)
Q Consensus 374 -~~~i~g------~--~~~~---~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l 441 (1715)
.....+ . ...+ ...........|...++|.+++|+++++|+|..||.|.+|.-...+ ......
T Consensus 170 ~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-----~~~~t~ 244 (792)
T KOG1963|consen 170 NSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS-----DDSETC 244 (792)
T ss_pred CCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccc-----cccccc
Confidence 000000 0 0000 0011122223445558999999999999999999999999765411 112234
Q ss_pred eeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccc
Q 048801 442 DVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHL 521 (1715)
Q Consensus 442 ~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l 521 (1715)
..+.-|.+.|++++|+++| .+|++|+..|.+.+|.+.++.
T Consensus 245 t~lHWH~~~V~~L~fS~~G--------------------------~~LlSGG~E~VLv~Wq~~T~~-------------- 284 (792)
T KOG1963|consen 245 TLLHWHHDEVNSLSFSSDG--------------------------AYLLSGGREGVLVLWQLETGK-------------- 284 (792)
T ss_pred eEEEecccccceeEEecCC--------------------------ceEeecccceEEEEEeecCCC--------------
Confidence 6678899999999999997 799999999999999988743
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEE
Q 048801 522 KVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVH 581 (1715)
Q Consensus 522 ~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~ 581 (1715)
.+-+..-...|..+.+|||+.+.+....|..|.+....+.+...
T Consensus 285 ----------------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~ 328 (792)
T KOG1963|consen 285 ----------------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS 328 (792)
T ss_pred ----------------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh
Confidence 11223345679999999999999999999999999886654433
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=165.76 Aligned_cols=302 Identities=15% Similarity=0.169 Sum_probs=218.9
Q ss_pred EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC------CCceEEEe-CCCCCeEEEEecCCCCcceEEEEec
Q 048801 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD------GLPISVLR-GHTGAVTAIAFSPRPSAIYQLLSSS 349 (1715)
Q Consensus 277 ~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t------g~~l~~L~-gH~~~VtsLafSPdg~~~~~LaSgS 349 (1715)
+.+.+.+|.+.|.+|.||.++++||+|+.|..++||.++. .+++.... .|...|.||+|.-.+. .|++|+
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~---~~~SG~ 124 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR---FLYSGE 124 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe---eEecCC
Confidence 3445678999999999999999999999999999999853 45665554 3558999999998876 899999
Q ss_pred CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCC
Q 048801 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~ 429 (1715)
.+++|.+.|+.+.+.+..... ....+.|..+..+|..+.|++.+.+|.|.+||.+..
T Consensus 125 ~~~~VI~HDiEt~qsi~V~~~-----------------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~ 181 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVANE-----------------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR 181 (609)
T ss_pred CcceeEeeecccceeeeeecc-----------------------cCcccceeecccCCCCceEEEEecCceEEEEeccCC
Confidence 999999999998765443321 112346899999999999999999999999999864
Q ss_pred CccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccC
Q 048801 430 SVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 509 (1715)
Q Consensus 430 ~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~ 509 (1715)
. .++. +..+.........+.|+|.. +.+|++.+..|-+-+||.+..+..
T Consensus 182 ~-----~~~~-~~~~AN~~~~F~t~~F~P~~-------------------------P~Li~~~~~~~G~~~~D~R~~~~~ 230 (609)
T KOG4227|consen 182 Q-----NPIS-LVLPANSGKNFYTAEFHPET-------------------------PALILVNSETGGPNVFDRRMQARP 230 (609)
T ss_pred C-----CCCc-eeeecCCCccceeeeecCCC-------------------------ceeEEeccccCCCCceeeccccch
Confidence 2 1222 22233344466777888865 578999999999999999853210
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCC--
Q 048801 510 GKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHS-- 587 (1715)
Q Consensus 510 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~-- 587 (1715)
.+. ......+......-..+.|+|+|..|++--....-.+||+-+.++...-..|.
T Consensus 231 --------~~~--------------~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~ 288 (609)
T KOG4227|consen 231 --------VYQ--------------RSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPN 288 (609)
T ss_pred --------HHh--------------hhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCC
Confidence 000 00001111112233567899999998877666666678887654432222232
Q ss_pred -----CCeEEEEEccCCCcEEEEEeCCCcEEEEECCC----------C-------------ceEEEEEcccceEEEEEEc
Q 048801 588 -----ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE----------G-------------TPIRIYEIGRFKLVDGKFS 639 (1715)
Q Consensus 588 -----~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t----------g-------------k~l~tl~~h~~~V~svafS 639 (1715)
..+.+++|- +.+-+++|+.+-.|++|.+.. | +.+..+.+|..-+..|.|+
T Consensus 289 GY~N~~T~KS~~F~--~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~ 366 (609)
T KOG4227|consen 289 GYCNIKTIKSMTFI--DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFS 366 (609)
T ss_pred cceeeeeeeeeeee--cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeec
Confidence 245667774 456689999999999998742 1 2356778888888999999
Q ss_pred CCCCEEEEEeCCCeEEEEEC
Q 048801 640 PDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 640 PDG~~LAsgs~DG~I~IWdl 659 (1715)
|...+|++.+-...++||.-
T Consensus 367 ~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 367 QHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred CCcceEeccchhhheecccc
Confidence 99999999999999999974
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=177.56 Aligned_cols=329 Identities=19% Similarity=0.312 Sum_probs=236.6
Q ss_pred ccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEe-cCCCCCeEEEEECC--CCCEEEEE
Q 048801 227 STMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASC-RGHEGDITDLAVSS--NNTLVASA 303 (1715)
Q Consensus 227 ~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL-~gHs~~VtsLafSp--Dg~lLASG 303 (1715)
...++.+.+...|.+|.+.|..|.|...|..|++||+|..|.+||+..+.....+ .||...|....|-| +...|+++
T Consensus 126 ~~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~ 205 (559)
T KOG1334|consen 126 RLFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTS 205 (559)
T ss_pred HHHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceec
Confidence 3456677888899999999999999999999999999999999999988877665 57999998888987 45789999
Q ss_pred eCCCeeEEEECCC-CCc--eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCc
Q 048801 304 SNDFVIRVWRLPD-GLP--ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGK 380 (1715)
Q Consensus 304 S~DGtIrVWDl~t-g~~--l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~ 380 (1715)
+.||.|++=.+.. +.+ ...+..|.+.|..++.-|+... .|.+++.|+.+.-+|++.+.....+......
T Consensus 206 s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~--~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~------ 277 (559)
T KOG1334|consen 206 SRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK--PFLSCGEDAVVFHIDLRQDVPAEKFVCREAD------ 277 (559)
T ss_pred cccCceeeeeeccccceecceecccccCccceeeecCCCCC--cccccccccceeeeeeccCCccceeeeeccC------
Confidence 9999999987653 322 3456679999999999998875 7999999999999999876543333211100
Q ss_pred cCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCce---eeeeecCCCCCeeEEEE
Q 048801 381 SNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIH---ELDVLSGHENDVNYVQF 456 (1715)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~---~l~~l~gH~~~V~sLaf 456 (1715)
....-....++..|.. ..+++|+.|-.+++||.+.-.......+.. +-.......-.|++++|
T Consensus 278 -------------~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Y 344 (559)
T KOG1334|consen 278 -------------EKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVY 344 (559)
T ss_pred -------------CccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEe
Confidence 0001246788888865 489999999999999997643211111000 00111122346899999
Q ss_pred ccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCC
Q 048801 457 SGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536 (1715)
Q Consensus 457 spdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 536 (1715)
+.++ .-|++...|-.|+++.-.-+. + ..+.+..+....
T Consensus 345 sh~~--------------------------sElLaSYnDe~IYLF~~~~~~--G--------------~~p~~~s~~~~~ 382 (559)
T KOG1334|consen 345 SHDG--------------------------SELLASYNDEDIYLFNKSMGD--G--------------SEPDPSSPREQY 382 (559)
T ss_pred cCCc--------------------------cceeeeecccceEEecccccc--C--------------CCCCCCcchhhc
Confidence 9765 455566677788888433211 0 000000100011
Q ss_pred CcccccCCCC--CeeEEE-eCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 048801 537 PRQRLLPTPR--GVNMIV-WSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTI 613 (1715)
Q Consensus 537 ~~~~l~~h~~--~Vtsla-fSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~ 613 (1715)
....+.+|.. .|.++- |-|...|+++|+.-|.|.||+-.+++.+..+.+....|+||.-||.. -+||++|-|.-|+
T Consensus 383 ~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~-PvLAsSGid~DVK 461 (559)
T KOG1334|consen 383 VKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL-PVLASSGIDHDVK 461 (559)
T ss_pred cchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC-chhhccCCcccee
Confidence 1122455543 366665 45888999999999999999999999999999888899999999954 5788999999999
Q ss_pred EEECCC
Q 048801 614 VWDIWE 619 (1715)
Q Consensus 614 VWDl~t 619 (1715)
||...+
T Consensus 462 IWTP~~ 467 (559)
T KOG1334|consen 462 IWTPLT 467 (559)
T ss_pred eecCCc
Confidence 998643
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-14 Score=177.55 Aligned_cols=288 Identities=16% Similarity=0.247 Sum_probs=206.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCC---CCCeEEEEECC--CCCEEEEEeCCCeeEEEEC-CCC-
Q 048801 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGH---EGDITDLAVSS--NNTLVASASNDFVIRVWRL-PDG- 317 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gH---s~~VtsLafSp--Dg~lLASGS~DGtIrVWDl-~tg- 317 (1715)
.-..+.|+|-...|+++.+.-.|+|||.+.++.+..+..+ ...|+.+.+-. |..+|++|+.||.|+||+- .++
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 3456778888889999987789999999999998777644 34788888864 5679999999999999963 222
Q ss_pred ---CceEEEeCC-------CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 318 ---LPISVLRGH-------TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 318 ---~~l~~L~gH-------~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
+.+..+.+- .+.-.-+.|....+ +|+++|.-..|+|||.........+...
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G---~Ll~tGd~r~IRIWDa~~E~~~~diP~~---------------- 1206 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG---HLLVTGDVRSIRIWDAHKEQVVADIPYG---------------- 1206 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCC---eEEecCCeeEEEEEecccceeEeecccC----------------
Confidence 223222211 11113346666655 6778777899999999876554333211
Q ss_pred CCCCCCCCCCcceeEEEEc-cCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCC--eeEEEEccCccccc
Q 048801 388 GPSSSNGLQSHQILCCAYN-ANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEND--VNYVQFSGCAVASR 464 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafS-pdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~--V~sLafspdg~as~ 464 (1715)
...-|+++.-+ ..|+.|++|..||.|++||.+.... ...+.....|+.. |..+.+.+.|.
T Consensus 1207 --------s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~------ds~v~~~R~h~~~~~Iv~~slq~~G~--- 1269 (1387)
T KOG1517|consen 1207 --------SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP------DSLVCVYREHNDVEPIVHLSLQRQGL--- 1269 (1387)
T ss_pred --------CCccceeecccccCCceEEEeecCCceEEeecccCCc------cccceeecccCCcccceeEEeecCCC---
Confidence 12235555433 3579999999999999999986432 2356677888887 99999988772
Q ss_pred ccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCC
Q 048801 465 SAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPT 544 (1715)
Q Consensus 465 ~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h 544 (1715)
..|++|+.||.|.+||++...... ...+..|
T Consensus 1270 ----------------------~elvSgs~~G~I~~~DlR~~~~e~---------------------------~~~iv~~ 1300 (1387)
T KOG1517|consen 1270 ----------------------GELVSGSQDGDIQLLDLRMSSKET---------------------------FLTIVAH 1300 (1387)
T ss_pred ----------------------cceeeeccCCeEEEEecccCcccc---------------------------cceeeec
Confidence 479999999999999998621000 0011111
Q ss_pred ---CCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec-------CCCCeEEEEEccCCCcEEEEEeCCCcEEE
Q 048801 545 ---PRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG-------HSASSYVLDVHPFNPRIAMSAGYDGRTIV 614 (1715)
Q Consensus 545 ---~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g-------H~~~V~sLafSP~dg~lLaSgs~DGtI~V 614 (1715)
.+.++++..+++...||+|+. +.|.||++ .|+.+..++. ..+.+.|++||| ..-++|+|..|.+|.|
T Consensus 1301 ~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEHAPIIASGSA-QLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSI 1377 (1387)
T ss_pred cccCccceeeeeccCCCeeeecCc-ceEEEEec-ChhhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEE
Confidence 124899999999999999998 99999997 4555555442 245679999999 6678888999999999
Q ss_pred EECCCC
Q 048801 615 WDIWEG 620 (1715)
Q Consensus 615 WDl~tg 620 (1715)
|....+
T Consensus 1378 Ys~~k~ 1383 (1387)
T KOG1517|consen 1378 YSCEKP 1383 (1387)
T ss_pred eecCCc
Confidence 987554
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-13 Score=173.97 Aligned_cols=285 Identities=17% Similarity=0.210 Sum_probs=197.6
Q ss_pred CCcEEEEeCCCC-cEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCeeEEEECCCCCc--eEE----EeCCCCCeEEEEe
Q 048801 264 DRLVKIWSMETA-FCLASCRGHEGDITDLAVSS-NNTLVASASNDFVIRVWRLPDGLP--ISV----LRGHTGAVTAIAF 335 (1715)
Q Consensus 264 DGtIrIWDl~tg-k~l~tL~gHs~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~tg~~--l~~----L~gH~~~VtsLaf 335 (1715)
++.+.||++... ..-..+. ....|+|++|+| +..+||.|+.+|.|.+||+..+.. ... ...|..+|+.+.|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 358999999876 3334444 577899999999 567888999999999999987654 222 2368899999999
Q ss_pred cCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEE
Q 048801 336 SPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVT 414 (1715)
Q Consensus 336 SPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~Lat 414 (1715)
..+-.. .-+++++.||.|..|+++.-.......... ..............+++++|.+ +-..|++
T Consensus 300 ~~~~~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~-------------~~~~~~~~~~~~~~~t~~~F~~~~p~~FiV 365 (555)
T KOG1587|consen 300 LQNEHN-TEFFSLSSDGSICSWDTDMLSLPVEGLLLE-------------SKKHKGQQSSKAVGATSLKFEPTDPNHFIV 365 (555)
T ss_pred eccCCC-CceEEEecCCcEeeeeccccccchhhcccc-------------cccccccccccccceeeEeeccCCCceEEE
Confidence 876553 358999999999999876433211100000 0000111223355689999988 4478999
Q ss_pred ecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC
Q 048801 415 GSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR 494 (1715)
Q Consensus 415 Gs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~ 494 (1715)
|+.+|.|..-......... ....+.+..+..|.++|.++.++|-+ +..|++++
T Consensus 366 GTe~G~v~~~~r~g~~~~~-~~~~~~~~~~~~h~g~v~~v~~nPF~-------------------------~k~fls~g- 418 (555)
T KOG1587|consen 366 GTEEGKVYKGCRKGYTPAP-EVSYKGHSTFITHIGPVYAVSRNPFY-------------------------PKNFLSVG- 418 (555)
T ss_pred EcCCcEEEEEeccCCcccc-cccccccccccccCcceEeeecCCCc-------------------------cceeeeec-
Confidence 9999998763333221100 01112344667789999999999854 56677776
Q ss_pred CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC-CEEEEEecCCeEEEEE
Q 048801 495 DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWN 573 (1715)
Q Consensus 495 DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG-~~LaTgs~DGtI~IWD 573 (1715)
|.+++||.... ...++..+..+...|++++|||-. ..++++..||.|.|||
T Consensus 419 DW~vriWs~~~----------------------------~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 419 DWTVRIWSEDV----------------------------IASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD 470 (555)
T ss_pred cceeEeccccC----------------------------CCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence 99999997652 122344445556669999999965 4667778899999999
Q ss_pred CCC--CceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC
Q 048801 574 AVD--GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 574 l~s--g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t 619 (1715)
+.. ..++.+..-+....+.+.|++ .+++|++|...|+|.+|++..
T Consensus 471 Ll~~~~~Pv~s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 471 LLQDDEEPVLSQKVCSPALTRVRWSP-NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred hhccccCCcccccccccccceeecCC-CCcEEEEecCCCcEEEEEcCc
Confidence 954 345555555555566677776 789999999999999999853
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8e-14 Score=177.40 Aligned_cols=321 Identities=17% Similarity=0.199 Sum_probs=213.2
Q ss_pred ccceeEEEEcCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCC-------CcEEEEecCCCCCeEEEEECCCCCEEEE
Q 048801 231 QKMQNIKKLRGHRDAVYCAIFDRSG-RFVITGSDDRLVKIWSMET-------AFCLASCRGHEGDITDLAVSSNNTLVAS 302 (1715)
Q Consensus 231 ~~~k~l~~L~GH~~~Vt~VafSpDG-~~LaTGS~DGtIrIWDl~t-------gk~l~tL~gHs~~VtsLafSpDg~lLAS 302 (1715)
..+..++.|..|...|..++.++.. .+++|||.||+|+||++.. .+...++..-.+.+.++.+.+.+..+|+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 4677899999999999999988654 9999999999999999753 1333444445778999999999999999
Q ss_pred EeCCCeeEEEECCCC--C-----ceEEEeCC-CC-CeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCC
Q 048801 303 ASNDFVIRVWRLPDG--L-----PISVLRGH-TG-AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKP 373 (1715)
Q Consensus 303 GS~DGtIrVWDl~tg--~-----~l~~L~gH-~~-~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~ 373 (1715)
++.||.|++.+++.. . +.+....+ .+ .|..-+|...... ..|+.+...+.|..||++......++..
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S-~~lvy~T~~~~iv~~D~r~~~~~w~lk~--- 1191 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQS-HVLVYATDLSRIVSWDTRMRHDAWRLKN--- 1191 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccc-eeEEEEEeccceEEecchhhhhHHhhhc---
Confidence 999999999998752 1 11222212 23 3444455554443 2678888889999999987665444322
Q ss_pred CCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeE
Q 048801 374 PDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNY 453 (1715)
Q Consensus 374 ~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~s 453 (1715)
....+.|++++.+|.+.++++|+..|.+.+||++-+.. ....-..+..+|..
T Consensus 1192 --------------------~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~--------i~sw~~P~~~~i~~ 1243 (1431)
T KOG1240|consen 1192 --------------------QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP--------ILSWEHPARAPIRH 1243 (1431)
T ss_pred --------------------CccccceeEEEecCCceEEEEecCCceEEEEEeecCce--------eecccCcccCCcce
Confidence 22345699999999999999999999999999975321 11122334467777
Q ss_pred EEEccCcccccccccccccccccccccCCcccCce-EEEEc-CCCeEEEEecCCCccCcccccccccccccCCCCCCCCC
Q 048801 454 VQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN-IVTCS-RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531 (1715)
Q Consensus 454 Lafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~-LaSgS-~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~ 531 (1715)
+..+|-.. .... +.+++ ..+.|.+|++.++..... .|.. ...+.+...
T Consensus 1244 v~~~~~~~-----------------------~~S~~vs~~~~~~nevs~wn~~~g~~~~v--l~~s-----~~~p~ls~~ 1293 (1431)
T KOG1240|consen 1244 VWLCPTYP-----------------------QESVSVSAGSSSNNEVSTWNMETGLRQTV--LWAS-----DGAPILSYA 1293 (1431)
T ss_pred EEeeccCC-----------------------CCceEEEecccCCCceeeeecccCcceEE--EEcC-----CCCcchhhh
Confidence 77776420 0023 33344 578899999998743322 2221 011111111
Q ss_pred CCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceE-------------------------------
Q 048801 532 PPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLV------------------------------- 580 (1715)
Q Consensus 532 ~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l------------------------------- 580 (1715)
.+.. .. ...+.-.....++..-+.++++|+.|..|+.||.......
T Consensus 1294 ~Ps~--~~-~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e 1370 (1431)
T KOG1240|consen 1294 LPSN--DA-RKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDE 1370 (1431)
T ss_pred cccc--cC-CCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchh
Confidence 1111 00 0012222333444555678999999999999998542110
Q ss_pred -----------------EEE--------ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 581 -----------------HSL--------TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 581 -----------------~tL--------~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
..+ ..|..+|+++++......+|++++.||.|+||.
T Consensus 1371 ~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1371 FIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000 147778889988876778999999999999993
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.4e-14 Score=156.57 Aligned_cols=365 Identities=15% Similarity=0.153 Sum_probs=218.2
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEE-eCCCeeEEEECCCCCceEEEeCCC
Q 048801 249 AIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASA-SNDFVIRVWRLPDGLPISVLRGHT 327 (1715)
Q Consensus 249 VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASG-S~DGtIrVWDl~tg~~l~~L~gH~ 327 (1715)
+.|||+|++||+++.- .+.|-|..+.+..+.+.. -..|.-|.|..|..+++++ ..|+.|.+|++...+-...+....
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 5699999999999865 888889888776555442 4567889999998776665 678899999999988888888888
Q ss_pred CCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc
Q 048801 328 GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA 407 (1715)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp 407 (1715)
.++.+++|+|+|+. .|.+...+-.|.+|.+.+..... ++.+ ...+..++|+|
T Consensus 92 agls~~~WSPdgrh--iL~tseF~lriTVWSL~t~~~~~---~~~p-----------------------K~~~kg~~f~~ 143 (447)
T KOG4497|consen 92 AGLSSISWSPDGRH--ILLTSEFDLRITVWSLNTQKGYL---LPHP-----------------------KTNVKGYAFHP 143 (447)
T ss_pred CcceeeeECCCcce--EeeeecceeEEEEEEeccceeEE---eccc-----------------------ccCceeEEECC
Confidence 99999999999974 67788889999999998755321 1111 11234555566
Q ss_pred CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccc----cc--cccccccccccC
Q 048801 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAM----SD--AFKEENVPKFKN 481 (1715)
Q Consensus 408 dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~----~~--~~~~~~~~~~~~ 481 (1715)
+|++.+..+.-.....+++.. .+....+..+.-.+-..+.+.|+|+|.....-. .. .+... ......
T Consensus 144 dg~f~ai~sRrDCkdyv~i~~------c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~-lG~k~v 216 (447)
T KOG4497|consen 144 DGQFCAILSRRDCKDYVQISS------CKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG-LGLKFV 216 (447)
T ss_pred CCceeeeeecccHHHHHHHHh------hHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeec-cceeEE
Confidence 655555443221111111100 000111122222223333444444431100000 00 00000 000001
Q ss_pred Cc-ccCceEEEEcCCCeEEEEecCCCccCccccccccc--------------------ccccCCCCCCCCC---------
Q 048801 482 SW-FCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRA--------------------YHLKVPPPPLPPQ--------- 531 (1715)
Q Consensus 482 s~-~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~--------------------~~l~~~~~~~~~~--------- 531 (1715)
.| .+..+|+.|+.|+.++|.+--+-+..+.+...... ..+...++.....
T Consensus 217 ~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~Y 296 (447)
T KOG4497|consen 217 EWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIY 296 (447)
T ss_pred EeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhh
Confidence 11 12479999999999998664443333222111000 0001111110000
Q ss_pred --------CCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC--CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCc
Q 048801 532 --------PPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD--CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPR 601 (1715)
Q Consensus 532 --------~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D--GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~ 601 (1715)
.....+........-++..++||+|..+++|-... +.+.+||+...++...+. ...+|....|+|..++
T Consensus 297 E~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~pr 375 (447)
T KOG4497|consen 297 EQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPR 375 (447)
T ss_pred hhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCce
Confidence 00011111222334568889999999999986543 579999998877655553 4567999999995556
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCe
Q 048801 602 IAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQ 653 (1715)
Q Consensus 602 lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~ 653 (1715)
+++. .....+++|...-..++..-. ....|..+.|..+|..|+..+.|..
T Consensus 376 L~vc-tg~srLY~W~psg~~~V~vP~-~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 376 LVVC-TGKSRLYFWAPSGPRVVGVPK-KGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EEEE-cCCceEEEEcCCCceEEecCC-CCceeeeEEecCCCcEEEEEcCCce
Confidence 5554 445579999986655555544 3468999999999999999988763
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.3e-14 Score=174.49 Aligned_cols=301 Identities=16% Similarity=0.170 Sum_probs=205.1
Q ss_pred CeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCC---CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCC
Q 048801 287 DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGH---TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQ 363 (1715)
Q Consensus 287 ~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH---~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~ 363 (1715)
+-..+.|+|-...++++...-.|+|||.+.++.+..+..+ ...|+.+.+-.+.... ++++|+.||.|+||+-....
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~a-LlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDA-LLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchh-heeeeccCceEEEecccccc
Confidence 4566788888888999887779999999999888777543 3578899887765433 89999999999999643221
Q ss_pred CcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee
Q 048801 364 YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV 443 (1715)
Q Consensus 364 ~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~ 443 (1715)
. +....+.+.... ........+.-.-+.|.....+|++++.-..|+|||+....+ ....
T Consensus 1145 ~-------~~~eLVTaw~~L------s~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~--------~~di 1203 (1387)
T KOG1517|consen 1145 W-------KKPELVTAWSSL------SDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV--------VADI 1203 (1387)
T ss_pred c-------CCceeEEeeccc------cccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee--------Eeec
Confidence 0 000111111000 000011111114567877666666666678999999976422 1222
Q ss_pred ecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccC
Q 048801 444 LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523 (1715)
Q Consensus 444 l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~ 523 (1715)
..+....|+++.-+-. .++.|+.|..||.|++||.+....
T Consensus 1204 P~~s~t~vTaLS~~~~-------------------------~gn~i~AGfaDGsvRvyD~R~a~~--------------- 1243 (1387)
T KOG1517|consen 1204 PYGSSTLVTALSADLV-------------------------HGNIIAAGFADGSVRVYDRRMAPP--------------- 1243 (1387)
T ss_pred ccCCCccceeeccccc-------------------------CCceEEEeecCCceEEeecccCCc---------------
Confidence 2333445555443321 247999999999999999985221
Q ss_pred CCCCCCCCCCCCCCcccccCCCCC--eeEEEeCCCCCE-EEEEecCCeEEEEECCCCceE--EEEecCC--C-CeEEEEE
Q 048801 524 PPPPLPPQPPRGGPRQRLLPTPRG--VNMIVWSLDNRF-VLAAIMDCRICVWNAVDGSLV--HSLTGHS--A-SSYVLDV 595 (1715)
Q Consensus 524 ~~~~~~~~~~~g~~~~~l~~h~~~--VtslafSPDG~~-LaTgs~DGtI~IWDl~sg~~l--~tL~gH~--~-~V~sLaf 595 (1715)
...+.....|... |..+.+.+.|-- |++|+.||.|++||++..... .++..|. + .++++..
T Consensus 1244 -----------ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~V 1312 (1387)
T KOG1517|consen 1244 -----------DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTV 1312 (1387)
T ss_pred -----------cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeee
Confidence 1234445556555 888999887655 999999999999999874222 2333343 3 4899999
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCceEEEEEc-------ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 596 HPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEI-------GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 596 SP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~-------h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
|+ ...++|+|+. +.|+||++ .|+.+..+.. ..+.+.+++|+|.--+||+|..|..|.||....++
T Consensus 1313 H~-hapiiAsGs~-q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1313 HE-HAPIIASGSA-QLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cc-CCCeeeecCc-ceEEEEec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 99 7789999988 99999998 5665555442 23467899999999999999999999999876543
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.5e-13 Score=145.80 Aligned_cols=287 Identities=14% Similarity=0.186 Sum_probs=198.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCeeEEEECCC---------C-CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEE
Q 048801 287 DITDLAVSSNNTLVASASNDFVIRVWRLPD---------G-LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356 (1715)
Q Consensus 287 ~VtsLafSpDg~lLASGS~DGtIrVWDl~t---------g-~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrI 356 (1715)
.|.+-+++|.+++|++|..+|.|.+..+.. | ..+...++|.++|+.++|..+ +|++|+ ||.|+-
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~-----~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD-----FLLSGG-DGLVYG 85 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh-----heeecc-CceEEE
Confidence 455668999999999999999999998853 2 344556899999999999943 566666 599999
Q ss_pred EecCCCCCc----ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCcc
Q 048801 357 WDARYSQYS----PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVE 432 (1715)
Q Consensus 357 WDl~tg~~l----~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~ 432 (1715)
|..+..... ..+.... +.......-..|.++.+.|..+-+++++.|+.++-||+.+++
T Consensus 86 w~W~E~~es~~~K~lwe~~~----------------P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~-- 147 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKI----------------PMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR-- 147 (325)
T ss_pred eeehhhhhhccchhhhhhcC----------------ccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE--
Confidence 987643321 0010000 000111223458899999877777777789999999999864
Q ss_pred CCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccc
Q 048801 433 DSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKV 512 (1715)
Q Consensus 433 ~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~ 512 (1715)
..+.+.+|++.|.+++--... ..+++|+.||++++||+++++....+
T Consensus 148 -------i~r~~rGHtDYvH~vv~R~~~--------------------------~qilsG~EDGtvRvWd~kt~k~v~~i 194 (325)
T KOG0649|consen 148 -------IQREYRGHTDYVHSVVGRNAN--------------------------GQILSGAEDGTVRVWDTKTQKHVSMI 194 (325)
T ss_pred -------EEEEEcCCcceeeeeeecccC--------------------------cceeecCCCccEEEEeccccceeEEe
Confidence 467899999999999873322 58999999999999999998765444
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcccccCC-CCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeE
Q 048801 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPT-PRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSY 591 (1715)
Q Consensus 513 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h-~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~ 591 (1715)
...... ..+.+| ...|-+++. +..+|++|+ ...+.+|.+++.++..++. -.+.|.
T Consensus 195 e~yk~~--------------------~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~ 250 (325)
T KOG0649|consen 195 EPYKNP--------------------NLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVH 250 (325)
T ss_pred ccccCh--------------------hhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEe-ccccee
Confidence 222111 112222 234666665 556888765 5679999999988877765 344577
Q ss_pred EEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCC-CEEEEEeCCCeEEEEE
Q 048801 592 VLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDG-TSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 592 sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG-~~LAsgs~DG~I~IWd 658 (1715)
.+.| ....++++|..+.|.-|.+ .|..-..........+...|+..- ++|-+++....+.|+.
T Consensus 251 ~v~F---~~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 251 LVDF---VDDCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred Eeee---ecceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 7788 3467778888889999987 566666665555556666665443 3444567777777764
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-13 Score=151.92 Aligned_cols=301 Identities=18% Similarity=0.218 Sum_probs=206.0
Q ss_pred EEEEecCCCCCeEEEEECC---CCCEEEEEeC----CCeeEEEECC--CCCceEEE-eCCCCCeEEEEecCCCCc--ceE
Q 048801 277 CLASCRGHEGDITDLAVSS---NNTLVASASN----DFVIRVWRLP--DGLPISVL-RGHTGAVTAIAFSPRPSA--IYQ 344 (1715)
Q Consensus 277 ~l~tL~gHs~~VtsLafSp---Dg~lLASGS~----DGtIrVWDl~--tg~~l~~L-~gH~~~VtsLafSPdg~~--~~~ 344 (1715)
.+..+.. .-.+.++.|+. .+.+||.|+. .+.|.|-.+. +++.+..- ..|..+++.+.|.|+... ..+
T Consensus 37 eiy~Y~a-p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdl 115 (364)
T KOG0290|consen 37 EIYTYNA-PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDL 115 (364)
T ss_pred eEEEecC-CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcch
Confidence 3444442 23577788873 2457787764 3556665543 34333221 358999999999998742 223
Q ss_pred EEEecCCCcEEEEecCCC--CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeE
Q 048801 345 LLSSSDDGTCRIWDARYS--QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFA 421 (1715)
Q Consensus 345 LaSgS~DGtVrIWDl~tg--~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~I 421 (1715)
|+++ +..+++|.+... .......+ .......+..+++++.|+. +-++|.+.+-|.++
T Consensus 116 LATs--~D~LRlWri~~ee~~~~~~~~L------------------~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTC 175 (364)
T KOG0290|consen 116 LATS--SDFLRLWRIGDEESRVELQSVL------------------NNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTC 175 (364)
T ss_pred hhcc--cCeEEEEeccCcCCceehhhhh------------------ccCcccccCCcccccccccCCcceeEeecccCeE
Confidence 4443 346999998742 21111111 0111233466799999987 66899999999999
Q ss_pred EEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEE
Q 048801 422 RVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW 501 (1715)
Q Consensus 422 rVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIW 501 (1715)
.|||+.++. .......+-+|...|..|+|...+ .+.|++++.||++++|
T Consensus 176 TiWdie~~~------~~~vkTQLIAHDKEV~DIaf~~~s-------------------------~~~FASvgaDGSvRmF 224 (364)
T KOG0290|consen 176 TIWDIETGV------SGTVKTQLIAHDKEVYDIAFLKGS-------------------------RDVFASVGADGSVRMF 224 (364)
T ss_pred EEEEEeecc------ccceeeEEEecCcceeEEEeccCc-------------------------cceEEEecCCCcEEEE
Confidence 999998752 233456778999999999999865 3799999999999999
Q ss_pred ecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEEEecC-CeEEEEECCC-Cc
Q 048801 502 IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLAAIMD-CRICVWNAVD-GS 578 (1715)
Q Consensus 502 Dl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaTgs~D-GtI~IWDl~s-g~ 578 (1715)
|++.... .+..|. -.....+...++|++ |-+++|+-..| ..|.|.|++. ..
T Consensus 225 DLR~leH------STIIYE--------------------~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t 278 (364)
T KOG0290|consen 225 DLRSLEH------STIIYE--------------------DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT 278 (364)
T ss_pred Eeccccc------ceEEec--------------------CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc
Confidence 9986331 111111 001133566678886 45677775555 4689999987 46
Q ss_pred eEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC------ceEEEEEcccceEEEEEEcC-CCCEEEEEeCC
Q 048801 579 LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG------TPIRIYEIGRFKLVDGKFSP-DGTSIVLSDDV 651 (1715)
Q Consensus 579 ~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg------k~l~tl~~h~~~V~svafSP-DG~~LAsgs~D 651 (1715)
++..|++|.+.|++++|.|.....++|||.|..+.|||+... .++..+. ..+.|..+.|++ .+.+|+++..
T Consensus 279 pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~- 356 (364)
T KOG0290|consen 279 PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG- 356 (364)
T ss_pred ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec-
Confidence 788999999999999999988899999999999999999752 2334444 456799999996 5677887765
Q ss_pred CeEEEE
Q 048801 652 GQIYLL 657 (1715)
Q Consensus 652 G~I~IW 657 (1715)
..+.|.
T Consensus 357 kkleiL 362 (364)
T KOG0290|consen 357 KKLEIL 362 (364)
T ss_pred CeeeEE
Confidence 344443
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-14 Score=168.73 Aligned_cols=315 Identities=17% Similarity=0.218 Sum_probs=232.8
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE-eCCCCCeEEEEecCCCCcceEEEEecCCCcE
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL-RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L-~gH~~~VtsLafSPdg~~~~~LaSgS~DGtV 354 (1715)
.+...|.+|.+.|..|.|+..|..|++|+.|..|.+||+..+.+...+ .||...|....|.|..... .+++++.||.|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~-ti~~~s~dgqv 211 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDR-TIVTSSRDGQV 211 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCc-CceeccccCce
Confidence 445678899999999999999999999999999999999998877666 4799999988999876543 79999999999
Q ss_pred EEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccC
Q 048801 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVED 433 (1715)
Q Consensus 355 rIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~ 433 (1715)
++=.+.....+ ........|.+.|.-++.-|+. ..|.+++.|+.+.-+|++....
T Consensus 212 r~s~i~~t~~~----------------------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~p-- 267 (559)
T KOG1334|consen 212 RVSEILETGYV----------------------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVP-- 267 (559)
T ss_pred eeeeeccccce----------------------ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCc--
Confidence 98765422211 1122345567788889988865 5688899999999999986532
Q ss_pred CCCCceeeeeecCCCC---CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 434 SEQPIHELDVLSGHEN---DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 434 ~~~~~~~l~~l~gH~~---~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
...+..-..+.. ....++..|.. ...+++++.|..+++||.+.-....
T Consensus 268 ----a~~~~cr~~~~~~~v~L~~Ia~~P~n-------------------------t~~faVgG~dqf~RvYD~R~~~~e~ 318 (559)
T KOG1334|consen 268 ----AEKFVCREADEKERVGLYTIAVDPRN-------------------------TNEFAVGGSDQFARVYDQRRIDKEE 318 (559)
T ss_pred ----cceeeeeccCCccceeeeeEecCCCC-------------------------ccccccCChhhhhhhhcccchhhcc
Confidence 222223333333 45667777654 3689999999999999987532111
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC--C----------c
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD--G----------S 578 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s--g----------~ 578 (1715)
..+ ... .-.+........-.|++++|+.++.-|++...|-.|+++.-.- | .
T Consensus 319 ~n~----~~~-------------~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~ 381 (559)
T KOG1334|consen 319 NNG----VLD-------------KFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQ 381 (559)
T ss_pred ccc----hhh-------------hcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhh
Confidence 111 000 0001111113345699999999888888888899999995432 2 2
Q ss_pred eEE-EEecCCC--CeEEEEEc-cCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeE
Q 048801 579 LVH-SLTGHSA--SSYVLDVH-PFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQI 654 (1715)
Q Consensus 579 ~l~-tL~gH~~--~V~sLafS-P~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I 654 (1715)
.+. .++||.. .|.++-|- | ...++++|+.-|.|+||+-.+++.++.+.+.+.-|.|+.=+|--..||+++-|--|
T Consensus 382 ~~k~vYKGHrN~~TVKgVNFfGP-rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DV 460 (559)
T KOG1334|consen 382 YVKRVYKGHRNSRTVKGVNFFGP-RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDV 460 (559)
T ss_pred ccchhhcccccccccceeeeccC-ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccce
Confidence 233 3788865 46666663 3 46799999999999999999999999998877778899999999999999999999
Q ss_pred EEEECCCC
Q 048801 655 YLLNTGQG 662 (1715)
Q Consensus 655 ~IWdl~tG 662 (1715)
+||...+.
T Consensus 461 KIWTP~~~ 468 (559)
T KOG1334|consen 461 KIWTPLTA 468 (559)
T ss_pred eeecCCcc
Confidence 99987444
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-13 Score=152.66 Aligned_cols=243 Identities=20% Similarity=0.296 Sum_probs=181.0
Q ss_pred CCCCCeEEEEEcCCC-----CEEEEEeCCCcEEEEeCCC--CcE--EEEe-----cCCCCCeEEEEECC-CCCEEEEEeC
Q 048801 241 GHRDAVYCAIFDRSG-----RFVITGSDDRLVKIWSMET--AFC--LASC-----RGHEGDITDLAVSS-NNTLVASASN 305 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG-----~~LaTGS~DGtIrIWDl~t--gk~--l~tL-----~gHs~~VtsLafSp-Dg~lLASGS~ 305 (1715)
.|.-+++.+.|.|+. .+|||.++ .++||.+.. .+. ...| ..+.+++++..|+. +-++|.+.|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 588899999999976 36777653 799999863 221 1112 24677999999987 6789999999
Q ss_pred CCeeEEEECCCCCc---eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccC
Q 048801 306 DFVIRVWRLPDGLP---ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSN 382 (1715)
Q Consensus 306 DGtIrVWDl~tg~~---l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~ 382 (1715)
|-+..|||+++|.. ...|-.|...|..|+|...+.. .+++.|.||.|+++|++..+....++....
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~--~FASvgaDGSvRmFDLR~leHSTIIYE~p~--------- 240 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD--VFASVGADGSVRMFDLRSLEHSTIIYEDPS--------- 240 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc--eEEEecCCCcEEEEEecccccceEEecCCC---------
Confidence 99999999998743 5567789999999999996654 899999999999999997765444433211
Q ss_pred CCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCC-CeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCc
Q 048801 383 VPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSD-TFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 383 ~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~D-G~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg 460 (1715)
.......++|++.. +++|+-..| ..|.|.|++. |..++..+.+|.+.|+.|+|.|..
T Consensus 241 -------------~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~--------P~tpva~L~~H~a~VNgIaWaPhS 299 (364)
T KOG0290|consen 241 -------------PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV--------PCTPVARLRNHQASVNGIAWAPHS 299 (364)
T ss_pred -------------CCCcceeeccCcCCchHHhhhhcCCceEEEEEecC--------CCcceehhhcCcccccceEecCCC
Confidence 13457788898744 666665443 5688999975 355688899999999999999976
Q ss_pred ccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
...|++++.|..+.|||+.+.-. .....++..
T Consensus 300 -------------------------~~hictaGDD~qaliWDl~q~~~-----------------------~~~~dPila 331 (364)
T KOG0290|consen 300 -------------------------SSHICTAGDDCQALIWDLQQMPR-----------------------ENGEDPILA 331 (364)
T ss_pred -------------------------CceeeecCCcceEEEEecccccc-----------------------cCCCCchhh
Confidence 47999999999999999975110 011122222
Q ss_pred ccCCCCCeeEEEeCC-CCCEEEEEecC
Q 048801 541 LLPTPRGVNMIVWSL-DNRFVLAAIMD 566 (1715)
Q Consensus 541 l~~h~~~VtslafSP-DG~~LaTgs~D 566 (1715)
.. ..+.|+.+.|++ .+.+|+++...
T Consensus 332 y~-a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 332 YT-AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred hh-ccceeeeeeecccCCCEEEEEecC
Confidence 22 466799999995 67788877643
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-12 Score=155.07 Aligned_cols=276 Identities=12% Similarity=0.152 Sum_probs=173.3
Q ss_pred EEEeCCCeeEEEECCC-CC--ceEEEeCCCCCeEEEEecCCCCcceEEEE-ecCCCcEEEEecCC-CCCcceecCCCCCC
Q 048801 301 ASASNDFVIRVWRLPD-GL--PISVLRGHTGAVTAIAFSPRPSAIYQLLS-SSDDGTCRIWDARY-SQYSPRIYLPKPPD 375 (1715)
Q Consensus 301 ASGS~DGtIrVWDl~t-g~--~l~~L~gH~~~VtsLafSPdg~~~~~LaS-gS~DGtVrIWDl~t-g~~l~~i~~~~~~~ 375 (1715)
++...++.|.+|++.+ +. .+..+. +.+....++++|+++ +|++ +..++.|.+|++.. +.+. ....
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~---~lyv~~~~~~~i~~~~~~~~g~l~-~~~~----- 75 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKR---HLYVGVRPEFRVLSYRIADDGALT-FAAE----- 75 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCC---EEEEEECCCCcEEEEEECCCCceE-Eeee-----
Confidence 3446789999999964 33 344444 446678899999987 5544 45688999999862 2211 1100
Q ss_pred CccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEE
Q 048801 376 AITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS-SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV 454 (1715)
Q Consensus 376 ~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs-~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sL 454 (1715)
.........++|+|+|++|++++ .++.|.+|++.+... ....+..+.+ .....++
T Consensus 76 ------------------~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~-----~~~~~~~~~~-~~~~~~~ 131 (330)
T PRK11028 76 ------------------SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI-----PVAPIQIIEG-LEGCHSA 131 (330)
T ss_pred ------------------ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC-----CCCceeeccC-CCcccEe
Confidence 00011246799999999888776 488999999963211 0111222222 2345677
Q ss_pred EEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 455 QFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 455 afspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
+++|++ ...+++...++.|.+||+.+........
T Consensus 132 ~~~p~g-------------------------~~l~v~~~~~~~v~v~d~~~~g~l~~~~--------------------- 165 (330)
T PRK11028 132 NIDPDN-------------------------RTLWVPCLKEDRIRLFTLSDDGHLVAQE--------------------- 165 (330)
T ss_pred EeCCCC-------------------------CEEEEeeCCCCEEEEEEECCCCcccccC---------------------
Confidence 888876 2344667778999999997522110000
Q ss_pred CCCcccccCCCCCeeEEEeCCCCCEEEEEec-CCeEEEEECCC--Cc--eEEEEecC------CCCeEEEEEccCCCcEE
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM-DCRICVWNAVD--GS--LVHSLTGH------SASSYVLDVHPFNPRIA 603 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPDG~~LaTgs~-DGtI~IWDl~s--g~--~l~tL~gH------~~~V~sLafSP~dg~lL 603 (1715)
...... ........++|+|+|++|+++.. ++.|.+|++.. ++ .+..+..+ ......+.++| ++++|
T Consensus 166 -~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~l 242 (330)
T PRK11028 166 -PAEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHL 242 (330)
T ss_pred -CCceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEE
Confidence 000000 11234567899999999988876 89999999973 33 34444322 11234688999 55655
Q ss_pred EEE-eCCCcEEEEECCCCc----eEEEEEcccceEEEEEEcCCCCEEEEEeC-CCeEEEEECC
Q 048801 604 MSA-GYDGRTIVWDIWEGT----PIRIYEIGRFKLVDGKFSPDGTSIVLSDD-VGQIYLLNTG 660 (1715)
Q Consensus 604 aSg-s~DGtI~VWDl~tgk----~l~tl~~h~~~V~svafSPDG~~LAsgs~-DG~I~IWdl~ 660 (1715)
+++ ..++.|.+|++.... .+..+..+ .....++|+|||++|+++.. ++.|.+|++.
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 555 457899999986533 22333222 23457899999999998765 8999999874
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.4e-14 Score=168.92 Aligned_cols=270 Identities=19% Similarity=0.267 Sum_probs=191.8
Q ss_pred EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 321 SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 321 ~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
.++..|...|..++|.|... .|++++.||+|.+|++..... .......+...+..|.++|
T Consensus 288 ~tl~s~~d~ir~l~~~~sep---~lit~sed~~lk~WnLqk~~~-----------------s~~~~~epi~tfraH~gPV 347 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEP---VLITASEDGTLKLWNLQKAKK-----------------SAEKDVEPILTFRAHEGPV 347 (577)
T ss_pred eeeecchhhhhhhhcCCCCC---eEEEeccccchhhhhhcccCC-----------------ccccceeeeEEEecccCce
Confidence 36677999999999999887 899999999999999833110 0011233456677899999
Q ss_pred eEEEEccCCCeEEEecCCCeEEEEeCCCCC-ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccc
Q 048801 401 LCCAYNANGTVFVTGSSDTFARVWSACKSS-VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKF 479 (1715)
Q Consensus 401 tslafSpdG~~LatGs~DG~IrVWDl~t~~-~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~ 479 (1715)
.|+++.+++..+.+|+.||+|+.|++.... ......+......+.||++.|+.+++++..
T Consensus 348 l~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~------------------- 408 (577)
T KOG0642|consen 348 LCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK------------------- 408 (577)
T ss_pred EEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-------------------
Confidence 999999999999999999999999886221 112233445567889999999999999864
Q ss_pred cCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC-C
Q 048801 480 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN-R 558 (1715)
Q Consensus 480 ~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG-~ 558 (1715)
+.|++|+.||++++|+....... .+ ......+.-..+.+-... .
T Consensus 409 -------~~Llscs~DgTvr~w~~~~~~~~-~f---------------------------~~~~e~g~Plsvd~~ss~~a 453 (577)
T KOG0642|consen 409 -------DRLLSCSSDGTVRLWEPTEESPC-TF---------------------------GEPKEHGYPLSVDRTSSRPA 453 (577)
T ss_pred -------cceeeecCCceEEeeccCCcCcc-cc---------------------------CCccccCCcceEeeccchhH
Confidence 78999999999999988653320 00 000001112223332211 1
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEec-------CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccc
Q 048801 559 FVLAAIMDCRICVWNAVDGSLVHSLTG-------HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRF 631 (1715)
Q Consensus 559 ~LaTgs~DGtI~IWDl~sg~~l~tL~g-------H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~ 631 (1715)
..++...-+.--++++..+..+..+.. ....+.-+.++| ...+.+++..|+.|+++|..+|.++.....|..
T Consensus 454 ~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~ 532 (577)
T KOG0642|consen 454 HSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSMVAHKD 532 (577)
T ss_pred hhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccccccchheeeccc
Confidence 111111122222333333433333321 123467788888 667888999999999999999999999999999
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 632 KLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 632 ~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
.++++++.|+|-+|++++.||.+.+|.+....+.
T Consensus 533 svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 533 SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred eecceeecCCCceEEeecCCceeehhhccchhee
Confidence 9999999999999999999999999998665443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.1e-12 Score=153.73 Aligned_cols=283 Identities=12% Similarity=0.156 Sum_probs=171.7
Q ss_pred EEeCCCcEEEEeCCC-Cc--EEEEecCCCCCeEEEEECCCCCEEEEEe-CCCeeEEEECC-CCCc--eEEEeCCCCCeEE
Q 048801 260 TGSDDRLVKIWSMET-AF--CLASCRGHEGDITDLAVSSNNTLVASAS-NDFVIRVWRLP-DGLP--ISVLRGHTGAVTA 332 (1715)
Q Consensus 260 TGS~DGtIrIWDl~t-gk--~l~tL~gHs~~VtsLafSpDg~lLASGS-~DGtIrVWDl~-tg~~--l~~L~gH~~~Vts 332 (1715)
+...++.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|++. ++.. +.... ..+....
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~ 84 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTH 84 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceE
Confidence 346789999999964 43 455554 346678899999999987765 47889999997 3432 22222 3345678
Q ss_pred EEecCCCCcceEEEEe-cCCCcEEEEecCCCCCc-ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC
Q 048801 333 IAFSPRPSAIYQLLSS-SDDGTCRIWDARYSQYS-PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT 410 (1715)
Q Consensus 333 LafSPdg~~~~~LaSg-S~DGtVrIWDl~tg~~l-~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~ 410 (1715)
++|+|+++ +|+++ ..++.|.+|++.....+ ..+.. ..+.....+++++|+|+
T Consensus 85 i~~~~~g~---~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-----------------------~~~~~~~~~~~~~p~g~ 138 (330)
T PRK11028 85 ISTDHQGR---FLFSASYNANCVSVSPLDKDGIPVAPIQI-----------------------IEGLEGCHSANIDPDNR 138 (330)
T ss_pred EEECCCCC---EEEEEEcCCCeEEEEEECCCCCCCCceee-----------------------ccCCCcccEeEeCCCCC
Confidence 99999998 45544 45899999998643211 11100 00112356788999998
Q ss_pred eEEEe-cCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceE
Q 048801 411 VFVTG-SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNI 489 (1715)
Q Consensus 411 ~LatG-s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~L 489 (1715)
+++++ ..++.|.+||+.+...... ....... ... ......++|+|++ +++
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~-~~~~~~~-~~~-g~~p~~~~~~pdg--------------------------~~l 189 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVA-QEPAEVT-TVE-GAGPRHMVFHPNQ--------------------------QYA 189 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccc-cCCCcee-cCC-CCCCceEEECCCC--------------------------CEE
Confidence 88554 4569999999975221000 0000011 111 2345678999986 566
Q ss_pred EEEc-CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec-CC
Q 048801 490 VTCS-RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM-DC 567 (1715)
Q Consensus 490 aSgS-~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~-DG 567 (1715)
+++. .+++|.+|++..... .+ .....+...+. -..+......+.++|+|++|+++.. ++
T Consensus 190 yv~~~~~~~v~v~~~~~~~~--~~---~~~~~~~~~p~--------------~~~~~~~~~~i~~~pdg~~lyv~~~~~~ 250 (330)
T PRK11028 190 YCVNELNSSVDVWQLKDPHG--EI---ECVQTLDMMPA--------------DFSDTRWAADIHITPDGRHLYACDRTAS 250 (330)
T ss_pred EEEecCCCEEEEEEEeCCCC--CE---EEEEEEecCCC--------------cCCCCccceeEEECCCCCEEEEecCCCC
Confidence 5554 499999999973210 00 00000000000 0001122346899999999998854 68
Q ss_pred eEEEEECCCCceEEEEecC---CCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 568 RICVWNAVDGSLVHSLTGH---SASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 568 tI~IWDl~sg~~l~tL~gH---~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
.|.+|++........+.++ ......+.|+|++..++++...+++|.||++.
T Consensus 251 ~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 251 LISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9999998654322222222 12345789999555555555569999999874
|
|
| >cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-14 Score=150.40 Aligned_cols=126 Identities=41% Similarity=0.659 Sum_probs=113.2
Q ss_pred CCCCCCCCccCCCCCCCCCCCCChHHHHHHhhhHHHhhhhccccchhhhhHHHHHHh-hhccccccCCCCCCHHHHHHHh
Q 048801 1587 DSHLHSPWEMHDPNVMWEHPEIDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAA-QKLDYLNRFPVPLYPEVIRLRL 1665 (1715)
Q Consensus 1587 ~~~~~SpWeie~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~i~~Rl 1665 (1715)
.+...|+|++.++. |.+|++.++.|++++..+.++... ...+.+..|..+++.. +.++|...++.|||++||++||
T Consensus 2 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~l~~~-~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl 78 (128)
T cd05529 2 YNPLSSEWELFDPG--WEQPHIRDEERERLISGLDKLLLS-LQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRL 78 (128)
T ss_pred CCCCCCchhccccc--CcCCCCCHHHHHHHHHHHHHHHhc-ccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHH
Confidence 35678999997766 888999999999999999999854 2445566677777777 8999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1666 VNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1666 ~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
++++|+++++++.||++|++||++||++++.|..+|+.|.++|.+.|+.+
T Consensus 79 ~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~l~~~~~~~l~~~ 128 (128)
T cd05529 79 ENRYYRSLEALRHDVRLILSNAETFNEPNSEIAKKAKRLSDWLLRILSSL 128 (128)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999764
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.7e-13 Score=154.80 Aligned_cols=227 Identities=22% Similarity=0.356 Sum_probs=167.3
Q ss_pred EecCCCCCeEEEEECC-CCCEEEEEeCCCeeEEEECCCC-------CceEEEeCCCCCeEEEEecCCCCcceEEEEecCC
Q 048801 280 SCRGHEGDITDLAVSS-NNTLVASASNDFVIRVWRLPDG-------LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD 351 (1715)
Q Consensus 280 tL~gHs~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~tg-------~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D 351 (1715)
.+.||+++|.+++|+| +...|||||.|.+|.||.+..+ +++..|.||...|--++|+|.-.+ .|++++.|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N--VLlsag~D 153 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN--VLLSAGSD 153 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh--hHhhccCC
Confidence 4679999999999999 6678999999999999998754 567889999999999999998764 79999999
Q ss_pred CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCc
Q 048801 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 352 GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~ 431 (1715)
.+|.+|++.+|+.+.++ .|...|++++|+.||.+|++++.|..|+|||.+++++
T Consensus 154 n~v~iWnv~tgeali~l--------------------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~ 207 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITL--------------------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV 207 (472)
T ss_pred ceEEEEeccCCceeeec--------------------------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE
Confidence 99999999998754332 2677799999999999999999999999999998754
Q ss_pred cCCCCCceeeeeecCCCC-CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEc----CCCeEEEEecCCC
Q 048801 432 EDSEQPIHELDVLSGHEN-DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS----RDGSAIIWIPRSR 506 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~~-~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS----~DGsIrIWDl~t~ 506 (1715)
+..-.+|.+ .-..+.|..++ . |+|.+ .+..+-+||...-
T Consensus 208 ---------v~e~~~heG~k~~Raifl~~g--------------------------~-i~tTGfsr~seRq~aLwdp~nl 251 (472)
T KOG0303|consen 208 ---------VSEGVAHEGAKPARAIFLASG--------------------------K-IFTTGFSRMSERQIALWDPNNL 251 (472)
T ss_pred ---------eeecccccCCCcceeEEeccC--------------------------c-eeeeccccccccceeccCcccc
Confidence 333345554 22334455554 3 44433 4678889987642
Q ss_pred ccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEE-EecCCeEEEEECCCCceE-EEEe
Q 048801 507 RSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA-AIMDCRICVWNAVDGSLV-HSLT 584 (1715)
Q Consensus 507 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaT-gs~DGtI~IWDl~sg~~l-~tL~ 584 (1715)
.. ...........+|..--|.+|...|.. |-.|+.|+-|.+.+-.+. +-|.
T Consensus 252 ~e---------------------------P~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln 304 (472)
T KOG0303|consen 252 EE---------------------------PIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLN 304 (472)
T ss_pred cC---------------------------cceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEec
Confidence 20 011122334566777788898887765 557999999998765532 2222
Q ss_pred --cCCCCeEEEEEcc
Q 048801 585 --GHSASSYVLDVHP 597 (1715)
Q Consensus 585 --gH~~~V~sLafSP 597 (1715)
....+-..+.|-|
T Consensus 305 ~f~S~epQRG~g~mP 319 (472)
T KOG0303|consen 305 TFSSKEPQRGMGFMP 319 (472)
T ss_pred ccccCCccccccccc
Confidence 1234445666666
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-12 Score=147.06 Aligned_cols=259 Identities=16% Similarity=0.206 Sum_probs=186.8
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC---CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEE
Q 048801 281 CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG---LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357 (1715)
Q Consensus 281 L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg---~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIW 357 (1715)
+..-..+|+|.+|++|+..+|.+.....|.||..... +...++..|...|++|.|.|..+ .|++++.|..-++|
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn---rIvtcs~drnayVw 82 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN---RIVTCSHDRNAYVW 82 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC---ceeEccCCCCcccc
Confidence 3334679999999999999999999999999987654 46788899999999999999987 79999999999999
Q ss_pred ec-CCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCC
Q 048801 358 DA-RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQ 436 (1715)
Q Consensus 358 Dl-~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~ 436 (1715)
.. ..+...+++. ...++..++|+.|+|.++.||+|+....|.||-+....--
T Consensus 83 ~~~~~~~Wkptlv-----------------------LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW---- 135 (361)
T KOG1523|consen 83 TQPSGGTWKPTLV-----------------------LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW---- 135 (361)
T ss_pred ccCCCCeecccee-----------------------EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccce----
Confidence 88 4444433332 2234667899999999999999999999999988643210
Q ss_pred CceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccc
Q 048801 437 PIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWT 516 (1715)
Q Consensus 437 ~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~ 516 (1715)
......-..+...|+++.|+|+. -+|++|+.|+..+|+..--
T Consensus 136 -WVsKhikkPirStv~sldWhpnn--------------------------VLlaaGs~D~k~rVfSayI----------- 177 (361)
T KOG1523|consen 136 -WVSKHIKKPIRSTVTSLDWHPNN--------------------------VLLAAGSTDGKCRVFSAYI----------- 177 (361)
T ss_pred -ehhhhhCCccccceeeeeccCCc--------------------------ceecccccCcceeEEEEee-----------
Confidence 01112334567789999999986 4889999999999986431
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc-eEEEEecCCCCeEEEEE
Q 048801 517 RAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS-LVHSLTGHSASSYVLDV 595 (1715)
Q Consensus 517 ~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~-~l~tL~gH~~~V~sLaf 595 (1715)
+...-+-.+.+-....+.+..+.......+.|..+.|+|+|..|+-.+.|+.|.+-|..... .+..+....-+..++.|
T Consensus 178 K~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ 257 (361)
T KOG1523|consen 178 KGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSW 257 (361)
T ss_pred eccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEe
Confidence 11111111222222233344555555667889999999999999999999999999987664 33333333356666666
Q ss_pred ccCCCcEEEEEeCC
Q 048801 596 HPFNPRIAMSAGYD 609 (1715)
Q Consensus 596 SP~dg~lLaSgs~D 609 (1715)
-. ...++.+++|
T Consensus 258 is--e~~vv~ag~~ 269 (361)
T KOG1523|consen 258 IS--ENSVVAAGYD 269 (361)
T ss_pred ec--CCceeecCCC
Confidence 43 2334445555
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-12 Score=145.25 Aligned_cols=218 Identities=17% Similarity=0.228 Sum_probs=170.4
Q ss_pred EEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEEC
Q 048801 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA---FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL 314 (1715)
Q Consensus 238 ~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg---k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl 314 (1715)
.+.--..+|+|.||++|+..+|++-....|.||..... +..+++..|...|++|+|+|..+.|++|+.|..-+||..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 34444678999999999999999999999999998655 467899999999999999999999999999999999998
Q ss_pred CCC---CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 315 PDG---LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 315 ~tg---~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
..+ ++..+|..+...++++.|+|..+ .|++|+.-..|.||-+.....= .+ ...
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~en---kFAVgSgar~isVcy~E~ENdW---WV------------------sKh 140 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKEN---KFAVGSGARLISVCYYEQENDW---WV------------------SKH 140 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCc---eEEeccCccEEEEEEEecccce---eh------------------hhh
Confidence 433 55666677999999999999987 8999999999999977543210 00 001
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCC--------CC-ceeeeeecCCCCCeeEEEEccCccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE--------QP-IHELDVLSGHENDVNYVQFSGCAVA 462 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~--------~~-~~~l~~l~gH~~~V~sLafspdg~a 462 (1715)
........|++++|+|++-+|++|+.|+.++||..--..++... .| ...+..+....+.|..+.|+|.|
T Consensus 141 ikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-- 218 (361)
T KOG1523|consen 141 IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-- 218 (361)
T ss_pred hCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC--
Confidence 11233566999999999999999999999999986433221111 11 12233344566789999999987
Q ss_pred ccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC
Q 048801 463 SRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 505 (1715)
Q Consensus 463 s~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t 505 (1715)
..|+-.+.|.++.+-|...
T Consensus 219 ------------------------~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 219 ------------------------NRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred ------------------------CEeeEecCCCceEEeecCC
Confidence 7999999999999988764
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.6e-12 Score=152.63 Aligned_cols=341 Identities=15% Similarity=0.142 Sum_probs=206.9
Q ss_pred CEE-EEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEE
Q 048801 256 RFV-ITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIA 334 (1715)
Q Consensus 256 ~~L-aTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLa 334 (1715)
+++ ++-..+|.|.|.|..+.+.+..+......-..++|+|||+++++++.||.|.++|+.+++.+.++... ....+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEE
Confidence 344 45567899999999999999999865544455789999999999999999999999999999998743 4568899
Q ss_pred ecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEE
Q 048801 335 FSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVT 414 (1715)
Q Consensus 335 fSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~Lat 414 (1715)
++++++. .+++....+.+.++|..+.+.+..+....... ......+..+..++....+++
T Consensus 85 ~s~DG~~--~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~------------------~~~~~Rv~aIv~s~~~~~fVv 144 (369)
T PF02239_consen 85 VSPDGKY--VYVANYEPGTVSVIDAETLEPVKTIPTGGMPV------------------DGPESRVAAIVASPGRPEFVV 144 (369)
T ss_dssp E--TTTE--EEEEEEETTEEEEEETTT--EEEEEE--EE-T------------------TTS---EEEEEE-SSSSEEEE
T ss_pred EcCCCCE--EEEEecCCCceeEeccccccceeecccccccc------------------cccCCCceeEEecCCCCEEEE
Confidence 9999982 34455678999999999988777664322110 002445778888888875555
Q ss_pred e-cCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCce-EEEE
Q 048801 415 G-SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN-IVTC 492 (1715)
Q Consensus 415 G-s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~-LaSg 492 (1715)
. -..+.|.+.|....+ +. .... ...........|+|++ .+ +++.
T Consensus 145 ~lkd~~~I~vVdy~d~~------~~-~~~~-i~~g~~~~D~~~dpdg--------------------------ry~~va~ 190 (369)
T PF02239_consen 145 NLKDTGEIWVVDYSDPK------NL-KVTT-IKVGRFPHDGGFDPDG--------------------------RYFLVAA 190 (369)
T ss_dssp EETTTTEEEEEETTTSS------CE-EEEE-EE--TTEEEEEE-TTS--------------------------SEEEEEE
T ss_pred EEccCCeEEEEEecccc------cc-ceee-ecccccccccccCccc--------------------------ceeeecc
Confidence 4 445888888876431 11 1112 2223456677888876 44 4555
Q ss_pred cCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEE
Q 048801 493 SRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 572 (1715)
Q Consensus 493 S~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IW 572 (1715)
..+..|.++|..+++....+..-... ...+...+ .|...=..-+.+..+...++.-....+.+|
T Consensus 191 ~~sn~i~viD~~~~k~v~~i~~g~~p---------------~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~ 254 (369)
T PF02239_consen 191 NGSNKIAVIDTKTGKLVALIDTGKKP---------------HPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVH 254 (369)
T ss_dssp GGGTEEEEEETTTTEEEEEEE-SSSB---------------EETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred cccceeEEEeeccceEEEEeeccccc---------------cccccccc-cCCCcceEEeeccccceecccccCCccccc
Confidence 67778999998875533221100000 00011111 122110011222344444444444567789
Q ss_pred ECCCCceEEEEecCCCCeEEEEEccCCCcEEEEE----eCCCcEEEEECCCCceEEEEEccc-ceEEEEEEcCCCCEEEE
Q 048801 573 NAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSA----GYDGRTIVWDIWEGTPIRIYEIGR-FKLVDGKFSPDGTSIVL 647 (1715)
Q Consensus 573 Dl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSg----s~DGtI~VWDl~tgk~l~tl~~h~-~~V~svafSPDG~~LAs 647 (1715)
+..+.+.++.+....++ ..+..|| +++++... ...++|.|+|..+.+.+.++.... ..+..+.|++||+.+.+
T Consensus 255 d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~v 332 (369)
T PF02239_consen 255 DDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWV 332 (369)
T ss_dssp TTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEE
T ss_pred hhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEE
Confidence 99999999999987777 7788899 55555554 556899999999998887775333 25889999999998775
Q ss_pred E--eCCCeEEEEECCCCccccccc
Q 048801 648 S--DDVGQIYLLNTGQGESQKDAK 669 (1715)
Q Consensus 648 g--s~DG~I~IWdl~tGe~~k~~~ 669 (1715)
+ +.+|.|.|||..+.+..+..+
T Consensus 333 S~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 333 SVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEecCCCEEEEEECCCcEEEEEEE
Confidence 5 444579999999998776554
|
... |
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-12 Score=148.13 Aligned_cols=212 Identities=16% Similarity=0.215 Sum_probs=165.3
Q ss_pred CCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccc
Q 048801 392 SNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470 (1715)
Q Consensus 392 ~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~ 470 (1715)
...+|...|..++|+| +...||+|+.|.+|.||.+..+-+. .....++..|.+|...|.-++|+|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~--~~ltepvv~L~gH~rrVg~V~wHPtA---------- 143 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT--RDLTEPVVELYGHQRRVGLVQWHPTA---------- 143 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccc--cCcccceEEEeecceeEEEEeecccc----------
Confidence 3467899999999999 5678999999999999999765432 22335678899999999999999976
Q ss_pred ccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeE
Q 048801 471 FKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNM 550 (1715)
Q Consensus 471 ~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vts 550 (1715)
.+.|++++.|.+|.+|++.++.. +.. ..|+.-|.+
T Consensus 144 ---------------~NVLlsag~Dn~v~iWnv~tgea-----------------------------li~-l~hpd~i~S 178 (472)
T KOG0303|consen 144 ---------------PNVLLSAGSDNTVSIWNVGTGEA-----------------------------LIT-LDHPDMVYS 178 (472)
T ss_pred ---------------hhhHhhccCCceEEEEeccCCce-----------------------------eee-cCCCCeEEE
Confidence 48999999999999999998552 122 238889999
Q ss_pred EEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCC-eEEEEEccCCCcEEEEEe---CCCcEEEEECCCC---ceE
Q 048801 551 IVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSAS-SYVLDVHPFNPRIAMSAG---YDGRTIVWDIWEG---TPI 623 (1715)
Q Consensus 551 lafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~-V~sLafSP~dg~lLaSgs---~DGtI~VWDl~tg---k~l 623 (1715)
+.|+.||.+|++++.|..|+|||.++++.+..-.+|.+. -..+.|-. ++.++.||- .+..+-|||...- -.+
T Consensus 179 ~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~ 257 (472)
T KOG0303|consen 179 MSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNLEEPIAL 257 (472)
T ss_pred EEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec-cCceeeeccccccccceeccCcccccCccee
Confidence 999999999999999999999999999999988888663 23344555 455555543 4678999987543 334
Q ss_pred EEEEcccceEEEEEEcCCCCEEE-EEeCCCeEEEEECCCC
Q 048801 624 RIYEIGRFKLVDGKFSPDGTSIV-LSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 624 ~tl~~h~~~V~svafSPDG~~LA-sgs~DG~I~IWdl~tG 662 (1715)
..+. ...+|.---|.+|...|. +|-.||.|+.|.+...
T Consensus 258 ~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 258 QELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred EEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 4454 344566667888888877 5567999999998654
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.9e-13 Score=156.15 Aligned_cols=267 Identities=14% Similarity=0.194 Sum_probs=180.7
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeE-EEEecC----CCCcceEEEEecCCCcEEEE
Q 048801 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVT-AIAFSP----RPSAIYQLLSSSDDGTCRIW 357 (1715)
Q Consensus 283 gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~Vt-sLafSP----dg~~~~~LaSgS~DGtVrIW 357 (1715)
.|...|.|+.|+.+...+.+++.+..+.-|++.+. .+..+.-....|. .+..-+ .+.....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 46777889999987777766655544444455332 2222211111111 111111 11112378888999998887
Q ss_pred ecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCC
Q 048801 358 DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQP 437 (1715)
Q Consensus 358 Dl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~ 437 (1715)
+-. ++. ......|.+.|.|-.|+|+|.-|++++.||.|++|.-..
T Consensus 91 ~k~-~rV-------------------------E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG--------- 135 (737)
T KOG1524|consen 91 NKS-ARV-------------------------ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG--------- 135 (737)
T ss_pred ccc-chh-------------------------hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc---------
Confidence 532 221 122345778899999999999999999999999998753
Q ss_pred ceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccc
Q 048801 438 IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTR 517 (1715)
Q Consensus 438 ~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~ 517 (1715)
....++.....+|.|++|.|+. ...+.+. .+.+.|=-+..
T Consensus 136 -MLRStl~Q~~~~v~c~~W~p~S-------------------------~~vl~c~--g~h~~IKpL~~------------ 175 (737)
T KOG1524|consen 136 -MLRSTVVQNEESIRCARWAPNS-------------------------NSIVFCQ--GGHISIKPLAA------------ 175 (737)
T ss_pred -hHHHHHhhcCceeEEEEECCCC-------------------------CceEEec--CCeEEEeeccc------------
Confidence 2234555667799999999986 2333333 23444432221
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEcc
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHP 597 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP 597 (1715)
.....+...|.+-|.++.|++...+|++|+.|...+|||. -|..+..-..|..+|++++|.|
T Consensus 176 -----------------n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~np 237 (737)
T KOG1524|consen 176 -----------------NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNP 237 (737)
T ss_pred -----------------ccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeecc
Confidence 1234456789999999999999999999999999999995 6788888889999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEE
Q 048801 598 FNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLL 657 (1715)
Q Consensus 598 ~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IW 657 (1715)
+ ..++.++.. ++++= ....+.|..++||+||..+++|+..|.+.+-
T Consensus 238 -d-~~~~v~S~n-t~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 238 -E-KDYLLWSYN-TARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred -c-cceeeeeee-eeeec-----------CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 4 455444432 33311 1134679999999999999999999987653
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-12 Score=153.48 Aligned_cols=264 Identities=14% Similarity=0.186 Sum_probs=184.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeE-EEEECC-------CCCEEEEEeCCCeeEEE
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDIT-DLAVSS-------NNTLVASASNDFVIRVW 312 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~Vt-sLafSp-------Dg~lLASGS~DGtIrVW 312 (1715)
-|...|.||.|+.....+.+++++..++-|++.+ .....+.-...-|. .+..-+ ....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~-~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSR-DSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccc-hhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4667778999998877777665554444445433 22222211111111 111111 23478888999999998
Q ss_pred ECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCC
Q 048801 313 RLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392 (1715)
Q Consensus 313 Dl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~ 392 (1715)
+ ..++....+..|.+.|.+-.|+|+|. -|++++.||.|++|.- +|.+..++
T Consensus 91 ~-k~~rVE~sv~AH~~A~~~gRW~~dGt---gLlt~GEDG~iKiWSr-sGMLRStl------------------------ 141 (737)
T KOG1524|consen 91 N-KSARVERSISAHAAAISSGRWSPDGA---GLLTAGEDGVIKIWSR-SGMLRSTV------------------------ 141 (737)
T ss_pred c-ccchhhhhhhhhhhhhhhcccCCCCc---eeeeecCCceEEEEec-cchHHHHH------------------------
Confidence 7 56777888899999999999999998 7999999999999974 33322221
Q ss_pred CCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccc
Q 048801 393 NGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFK 472 (1715)
Q Consensus 393 ~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~ 472 (1715)
......|.|++|.|+..-++.+- .+.+.|=.+.. ...+-...+|.+-|.++.|++..
T Consensus 142 -~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~---------n~k~i~WkAHDGiiL~~~W~~~s------------ 198 (737)
T KOG1524|consen 142 -VQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAA---------NSKIIRWRAHDGLVLSLSWSTQS------------ 198 (737)
T ss_pred -hhcCceeEEEEECCCCCceEEec-CCeEEEeeccc---------ccceeEEeccCcEEEEeecCccc------------
Confidence 12245699999999887665543 35565554432 22345678999999999999875
Q ss_pred ccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 048801 473 EENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIV 552 (1715)
Q Consensus 473 ~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsla 552 (1715)
+.+++|+.|-..+|||.. |..+.....|..+|++++
T Consensus 199 --------------~lI~sgGED~kfKvWD~~------------------------------G~~Lf~S~~~ey~ITSva 234 (737)
T KOG1524|consen 199 --------------NIIASGGEDFRFKIWDAQ------------------------------GANLFTSAAEEYAITSVA 234 (737)
T ss_pred --------------cceeecCCceeEEeeccc------------------------------CcccccCChhccceeeee
Confidence 899999999999999875 334455667889999999
Q ss_pred eCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 048801 553 WSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 553 fSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VW 615 (1715)
|.|+ ..++.++.+ ++++ -....+.|..++||+ ||..++.|...|.|.+=
T Consensus 235 ~npd-~~~~v~S~n-t~R~-----------~~p~~GSifnlsWS~-DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-TARF-----------SSPRVGSIFNLSWSA-DGTQATCGTSTGQLIVA 283 (737)
T ss_pred eccc-cceeeeeee-eeee-----------cCCCccceEEEEEcC-CCceeeccccCceEEEe
Confidence 9999 666666543 3331 123567899999999 77888888888877664
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.8e-12 Score=136.77 Aligned_cols=279 Identities=15% Similarity=0.231 Sum_probs=187.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC---------C-cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMET---------A-FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~t---------g-k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
..|.+-+++|.+++|+.|+.+|.|-+..+.+ | ..+...++|.++|+.++|. ..+|++|+. |.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEee
Confidence 3466778999999999999999999998753 1 3455668999999999998 446777654 9999998
Q ss_pred CCCCCc------eEEE--eCCC-----CCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCc
Q 048801 314 LPDGLP------ISVL--RGHT-----GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGK 380 (1715)
Q Consensus 314 l~tg~~------l~~L--~gH~-----~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~ 380 (1715)
+..... +..+ .-|. -.|+++...|..+ -++.++.|+.++.||+.+|+....+
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en---Si~~AgGD~~~y~~dlE~G~i~r~~------------ 152 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN---SILFAGGDGVIYQVDLEDGRIQREY------------ 152 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC---cEEEecCCeEEEEEEecCCEEEEEE------------
Confidence 754221 1111 1122 3689999998877 4677779999999999999865554
Q ss_pred cCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC-CeeEEEEccC
Q 048801 381 SNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN-DVNYVQFSGC 459 (1715)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~-~V~sLafspd 459 (1715)
.+|...|.|++--.....+++|+.||+++|||..+++......+.+.-..+..|.+ .|-+++.+.
T Consensus 153 -------------rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e- 218 (325)
T KOG0649|consen 153 -------------RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE- 218 (325)
T ss_pred -------------cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC-
Confidence 45688899998844445688999999999999998765443333333333344433 456665543
Q ss_pred cccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcc
Q 048801 460 AVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQ 539 (1715)
Q Consensus 460 g~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~ 539 (1715)
+.+++| ..-.+.+|.+++..+.
T Consensus 219 ---------------------------dWlvCG-gGp~lslwhLrsse~t------------------------------ 240 (325)
T KOG0649|consen 219 ---------------------------DWLVCG-GGPKLSLWHLRSSEST------------------------------ 240 (325)
T ss_pred ---------------------------ceEEec-CCCceeEEeccCCCce------------------------------
Confidence 455555 4567899999864321
Q ss_pred cccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 048801 540 RLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 540 ~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VW 615 (1715)
.+...+..+..+.| +...+++++....|.-|.+ +|.+-..........++..|+-.--.++..+|..+.+.|+
T Consensus 241 ~vfpipa~v~~v~F--~~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 241 CVFPIPARVHLVDF--VDDCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred EEEecccceeEeee--ecceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 12223445666777 4457778888888888886 4544444444444455555544112455556666666665
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.8e-12 Score=147.36 Aligned_cols=197 Identities=16% Similarity=0.157 Sum_probs=146.3
Q ss_pred eEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccccc
Q 048801 401 LCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFK 480 (1715)
Q Consensus 401 tslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~ 480 (1715)
.+++|+++|..|++|+.||++|||+.... ..+.....|...|.++.|+|++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---------~t~l~e~~~~~eV~DL~FS~dg-------------------- 198 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---------LTILEEIAHHAEVKDLDFSPDG-------------------- 198 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc---------hhhhhhHhhcCccccceeCCCC--------------------
Confidence 78999999999999999999999997543 2345567788999999999997
Q ss_pred CCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC---
Q 048801 481 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN--- 557 (1715)
Q Consensus 481 ~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG--- 557 (1715)
..|++.+.| ..+||++.++........ ......+..+.|+.|+
T Consensus 199 ------k~lasig~d-~~~VW~~~~g~~~a~~t~---------------------------~~k~~~~~~cRF~~d~~~~ 244 (398)
T KOG0771|consen 199 ------KFLASIGAD-SARVWSVNTGAALARKTP---------------------------FSKDEMFSSCRFSVDNAQE 244 (398)
T ss_pred ------cEEEEecCC-ceEEEEeccCchhhhcCC---------------------------cccchhhhhceecccCCCc
Confidence 799999999 999999998642222110 1112234556676666
Q ss_pred CEE--EEEecCCeEEEEECCCCc-----eEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE-cc
Q 048801 558 RFV--LAAIMDCRICVWNAVDGS-----LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE-IG 629 (1715)
Q Consensus 558 ~~L--aTgs~DGtI~IWDl~sg~-----~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~-~h 629 (1715)
.++ +.....+.|+.|++.... ...+.......|++++.++ ++++++.|+.||.|-|++..+-++++..+ .|
T Consensus 245 ~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH 323 (398)
T KOG0771|consen 245 TLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAH 323 (398)
T ss_pred eEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcEEEEEeceeeeeEeehhhh
Confidence 222 223334556666553321 1222223345699999999 88999999999999999998888877665 56
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 630 RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 630 ~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
..-|+.+.|+||.+++++.+.+..+.|..+..
T Consensus 324 ~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 324 LGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 77899999999999999999988888887754
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-11 Score=140.71 Aligned_cols=240 Identities=14% Similarity=0.217 Sum_probs=168.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCC--CcEEEEecCCC
Q 048801 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD--GTCRIWDARYS 362 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D--GtVrIWDl~tg 362 (1715)
...+..+.|..+...|..|+.|| .+++.................|..+-|+.. +++..+.+ ..+++.+++.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS-----LvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS-----LVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc-----eeEEEecCCCceEEEEEcccC
Confidence 44677788999999999999997 567776654332222223345666777764 34433333 45888888777
Q ss_pred CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeee
Q 048801 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442 (1715)
Q Consensus 363 ~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~ 442 (1715)
..+..+..+ ..|.++.++.+ .|++.-. ..|+|||+.+.++ +.
T Consensus 79 ~~ICe~~fp--------------------------t~IL~VrmNr~--RLvV~Le-e~IyIydI~~Mkl---------Lh 120 (391)
T KOG2110|consen 79 TTICEIFFP--------------------------TSILAVRMNRK--RLVVCLE-ESIYIYDIKDMKL---------LH 120 (391)
T ss_pred ceEEEEecC--------------------------CceEEEEEccc--eEEEEEc-ccEEEEeccccee---------eh
Confidence 766665543 34777777654 3444433 3488888876322 21
Q ss_pred eecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccccccc
Q 048801 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLK 522 (1715)
Q Consensus 443 ~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~ 522 (1715)
++..
T Consensus 121 TI~t---------------------------------------------------------------------------- 124 (391)
T KOG2110|consen 121 TIET---------------------------------------------------------------------------- 124 (391)
T ss_pred hhhc----------------------------------------------------------------------------
Confidence 1111
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEE--ecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCC
Q 048801 523 VPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAA--IMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP 600 (1715)
Q Consensus 523 ~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTg--s~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg 600 (1715)
...+..++.++.++..+.+||.- ...|.|.|||+.+.+.+..+.+|.+.+.+|+|++ +|
T Consensus 125 ------------------~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~G 185 (391)
T KOG2110|consen 125 ------------------TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-DG 185 (391)
T ss_pred ------------------cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-CC
Confidence 01122233344444445555542 2368899999999999999999999999999999 89
Q ss_pred cEEEEEeCCCc-EEEEECCCCceEEEEEcccc--eEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 601 RIAMSAGYDGR-TIVWDIWEGTPIRIYEIGRF--KLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 601 ~lLaSgs~DGt-I~VWDl~tgk~l~tl~~h~~--~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
.+|||++..|+ |+|+.+.+|+.+..|.-+.. .|.+++|+||+++|++++..++|+||.+..-.
T Consensus 186 ~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 186 TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 99999999997 58999999999999985543 47799999999999999999999999997654
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-12 Score=161.57 Aligned_cols=235 Identities=15% Similarity=0.105 Sum_probs=162.1
Q ss_pred CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCC---CcEEEEecCCCCCcceecCCCCCCCccCccC
Q 048801 306 DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD---GTCRIWDARYSQYSPRIYLPKPPDAITGKSN 382 (1715)
Q Consensus 306 DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D---GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~ 382 (1715)
+..|.|||..... ...+..|...+.+++|+|++. .|+.++.+ ..|++||+.+++.......
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~---~la~~s~~~~~~~i~i~dl~tg~~~~l~~~------------ 246 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGS---KLAYVSFENKKSQLVVHDLRSGARKVVASF------------ 246 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCC---EEEEEEecCCCcEEEEEeCCCCceEEEecC------------
Confidence 4689999985444 567777888999999999998 56665433 4799999987653211100
Q ss_pred CCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-CCCeEEEE--eCCCCCccCCCCCceeeeeecCCCCCeeEEEEccC
Q 048801 383 VPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS-SDTFARVW--SACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGC 459 (1715)
Q Consensus 383 ~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs-~DG~IrVW--Dl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspd 459 (1715)
.....+++|+|||+.|++++ .+|.+.|| |+.++. +..+..+...+....|+|+
T Consensus 247 --------------~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~----------~~~lt~~~~~~~~~~wSpD 302 (429)
T PRK01742 247 --------------RGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT----------PSQLTSGAGNNTEPSWSPD 302 (429)
T ss_pred --------------CCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC----------eEeeccCCCCcCCEEECCC
Confidence 11133689999999888764 57766665 554321 3345566667888999998
Q ss_pred cccccccccccccccccccccCCcccCceE-EEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCc
Q 048801 460 AVASRSAMSDAFKEENVPKFKNSWFCHDNI-VTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPR 538 (1715)
Q Consensus 460 g~as~~~~~~~~~~~~~~~~~~s~~~~~~L-aSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 538 (1715)
+ ..| ++...+|...||++.... ...
T Consensus 303 G--------------------------~~i~f~s~~~g~~~I~~~~~~~----------------------------~~~ 328 (429)
T PRK01742 303 G--------------------------QSILFTSDRSGSPQVYRMSASG----------------------------GGA 328 (429)
T ss_pred C--------------------------CEEEEEECCCCCceEEEEECCC----------------------------CCe
Confidence 7 444 455568888999775311 000
Q ss_pred ccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC-
Q 048801 539 QRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI- 617 (1715)
Q Consensus 539 ~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl- 617 (1715)
. ...+.. ..++|+|||++|++++.++ |.+||+.+++.......+ ....+.|+| ++++|+.++.+|.+.+|.+
T Consensus 329 ~-~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 329 S-LVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISP-NGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred E-EecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECC-CCCEEEEEEcCCCceEEEEE
Confidence 0 111222 3468999999999887765 566999888765333222 235678999 7778888888998888876
Q ss_pred -CCCceEEEEEcccceEEEEEEcCC
Q 048801 618 -WEGTPIRIYEIGRFKLVDGKFSPD 641 (1715)
Q Consensus 618 -~tgk~l~tl~~h~~~V~svafSPD 641 (1715)
.+|..++.+..+.+.+..++|||-
T Consensus 402 ~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 402 SADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ECCCCceEEccCCCCCCCCcccCCC
Confidence 368888889877888889999985
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=154.14 Aligned_cols=187 Identities=19% Similarity=0.207 Sum_probs=139.3
Q ss_pred EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE-eCCCCCeEEEEecCCCCcceEEEEecCCCcEE
Q 048801 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL-RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 277 ~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L-~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVr 355 (1715)
+.+.|.||++.|+|++|+.+|.+|++|+.|-.+.|||.-..+++..+ +||...|.++.|.|..++. .+++|..|..|+
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnr-iv~sgAgDk~i~ 120 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNR-IVLSGAGDKLIK 120 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCe-EEEeccCcceEE
Confidence 34678999999999999999999999999999999999888887776 5899999999999976543 899999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDS 434 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~ 434 (1715)
++|+...+.-.. ......+......|...|..++..|++ ..|.+++.||+|+-||++.......
T Consensus 121 lfdl~~~~~~~~---------------d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 121 LFDLDSSKEGGM---------------DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred EEeccccccccc---------------ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc
Confidence 999975331100 001122234455677889999999998 8899999999999999986432111
Q ss_pred CC-CceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecC
Q 048801 435 EQ-PIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPR 504 (1715)
Q Consensus 435 ~~-~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~ 504 (1715)
.. ....+..+...--...|+..+|.. ..+|++|+.|-.+++||.+
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltisp~r-------------------------p~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTISPSR-------------------------PYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred cccccHHHHHhchhhheeeeeeecCCC-------------------------CceEEecCCCchhhhhhhh
Confidence 00 001111111222345677777754 5799999999999999965
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-11 Score=138.69 Aligned_cols=316 Identities=13% Similarity=0.123 Sum_probs=207.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC--CeeEEEECCCCCce
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND--FVIRVWRLPDGLPI 320 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D--GtIrVWDl~tg~~l 320 (1715)
...|..+.|..|...|..|+.|| .++|..+..............|.-+-|+.. +||..+.+ ..+++.++..+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceE
Confidence 34577777999999999999987 578877654442222223345666777644 66665554 34889998887777
Q ss_pred EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 321 SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 321 ~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
..+. ....|.++.+..+ .|+++-.+. |.|||+++.+.+.++.... .+...+
T Consensus 82 Ce~~-fpt~IL~VrmNr~-----RLvV~Lee~-IyIydI~~MklLhTI~t~~----------------------~n~~gl 132 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNRK-----RLVVCLEES-IYIYDIKDMKLLHTIETTP----------------------PNPKGL 132 (391)
T ss_pred EEEe-cCCceEEEEEccc-----eEEEEEccc-EEEEecccceeehhhhccC----------------------CCccce
Confidence 7766 5678999999876 455555444 9999999998877664321 123346
Q ss_pred eEEEEccCCCeEEEec--CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccc
Q 048801 401 LCCAYNANGTVFVTGS--SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 401 tslafSpdG~~LatGs--~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
.+++++..+.+||.-+ ..|.|.|||+.+ ...+..+..|.+.+.+++|+++|
T Consensus 133 ~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n---------l~~v~~I~aH~~~lAalafs~~G------------------ 185 (391)
T KOG2110|consen 133 CALSPNNANCYLAYPGSTTSGDVVLFDTIN---------LQPVNTINAHKGPLAALAFSPDG------------------ 185 (391)
T ss_pred EeeccCCCCceEEecCCCCCceEEEEEccc---------ceeeeEEEecCCceeEEEECCCC------------------
Confidence 6666777777888543 468999999976 45677888999999999999997
Q ss_pred ccCCcccCceEEEEcCCCe-EEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 479 FKNSWFCHDNIVTCSRDGS-AIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS~DGs-IrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
.+|||++..|+ |||+.+.+++.+..+..- .....|.+++|+|++
T Consensus 186 --------~llATASeKGTVIRVf~v~~G~kl~eFRRG---------------------------~~~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 186 --------TLLATASEKGTVIRVFSVPEGQKLYEFRRG---------------------------TYPVSIYSLSFSPDS 230 (391)
T ss_pred --------CEEEEeccCceEEEEEEcCCccEeeeeeCC---------------------------ceeeEEEEEEECCCC
Confidence 79999999998 589998876643322110 013468999999999
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEE--EEEe-CCCcEEEEECCCCceEEEEEcccceE-
Q 048801 558 RFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIA--MSAG-YDGRTIVWDIWEGTPIRIYEIGRFKL- 633 (1715)
Q Consensus 558 ~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lL--aSgs-~DGtI~VWDl~tgk~l~tl~~h~~~V- 633 (1715)
.+|++.+..++|+||.+..-. ......+-....| .+.+. +++- -.+.-.+||.. +...+........
T Consensus 231 ~~L~~sS~TeTVHiFKL~~~~----~~~~~~p~~~~~~---~~~~sk~~~sylps~V~~~~~~~--R~FAt~~l~~s~~~ 301 (391)
T KOG2110|consen 231 QFLAASSNTETVHIFKLEKVS----NNPPESPTAGTSW---FGKVSKAATSYLPSQVSSVLDQS--RKFATAKLPESGRK 301 (391)
T ss_pred CeEEEecCCCeEEEEEecccc----cCCCCCCCCCCcc---cchhhhhhhhhcchhhhhhhhhc--cceeEEEccCCCcc
Confidence 999999999999999986543 1111110000000 00000 0010 01122335543 3333333222222
Q ss_pred EEEEEc--CCCCEEEEEeCCCeEEEEECCC
Q 048801 634 VDGKFS--PDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 634 ~svafS--PDG~~LAsgs~DG~I~IWdl~t 661 (1715)
..+.++ +...++.+++.||.++.|.+.-
T Consensus 302 ~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 302 NICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred ceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 223444 5788999999999999999853
|
|
| >KOG1786 consensus Lysosomal trafficking regulator LYST and related BEACH and WD40 repeat proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-14 Score=195.77 Aligned_cols=128 Identities=13% Similarity=-0.024 Sum_probs=109.8
Q ss_pred chhhHHHHhhhhhhhhhcccccccccchhHHHHHHHHhhc--------------cC---------chhhHHHHHHHHHHh
Q 048801 22 FSSTVQEMAQLEQQDMVANQVVEADVDLREVYFLIIHFLS--------------SG---------PCQRTLGLLWNELLE 78 (1715)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~dv~~~i~ElyfLi~~fL~--------------~g---------p~~~~~~~L~ReALE 78 (1715)
|.+...+|.++.. ... .+||+++|||+|.+|+.|-+ .+ .+.++|++.||+|||
T Consensus 469 ~~s~~~~Wt~~~~---~~~-~~~i~eli~~~~~~p~~l~n~~~~~lg~~~~~~~~~~~~lP~ws~~~~~~fi~~h~~ale 544 (1081)
T KOG1786|consen 469 FHSRMQAWTPDEK---GNL-HSCIKELIPKFVNDPSFLENSVILDLGEKQNGDSVDDVILPPWSSSSPREFIRDHRKALE 544 (1081)
T ss_pred hhhhhcccCcccc---ccc-chhHHHHHHHhccChHHHhhhhhhhhhhhcccccccceecCcccccCHHHHHHHHhhccc
Confidence 3445556665552 000 36999999999999976664 11 245899999999999
Q ss_pred cCCCccccccc-----cccCCCCCCCCCCCCCcc----ccCcccccccCCCCChHHHHHHHHHHHhcCCCCCCCccCCCC
Q 048801 79 HQLLPRRYHAW-----FSRSGVNSGNDNDDGISF----PLSYNKLVERYPHIEWDHLVKLLRQLLLYKASPFHGRIGGIA 149 (1715)
Q Consensus 79 SeyVS~~LH~W-----FGyKQrG~eAv~A~NVFh----~LTYEG~Vdld~i~dp~~r~aie~QI~nFGQTP~QL~~~pHP 149 (1715)
++||+++||+| |||||.|++|+.+.|||| +++|++.||.+.+.|+....+++.++++|||+|.|++.++|+
T Consensus 545 ~~~vs~~Lh~wId~~~fgykq~g~~~~~~~nv~~~~~~~l~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~h~ 624 (1081)
T KOG1786|consen 545 SNRVSQRLHHWIDLTIFGYKQNGSAAVIAMNVFLVSNKHLFYVNSVLNLRGYDPLEQNILIVSNNHFKQTIKQLFPKKHS 624 (1081)
T ss_pred ccchhhccccceeeehhhhhhcchHHHHHHHHHhhhhhhhccccchhhhcccchhhhhhhHHHhhccccchhhccccccc
Confidence 99999999999 999999999999999999 999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 048801 150 PNAA 153 (1715)
Q Consensus 150 Pr~~ 153 (1715)
.+..
T Consensus 625 ~~~~ 628 (1081)
T KOG1786|consen 625 VSEL 628 (1081)
T ss_pred cccc
Confidence 7543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=153.03 Aligned_cols=203 Identities=19% Similarity=0.231 Sum_probs=154.5
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeC-
Q 048801 247 YCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRG- 325 (1715)
Q Consensus 247 t~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~g- 325 (1715)
.+++|+.+|..|+||+.||++|||++.....+.....|.+.|.++.|+|||++|++.+.| ..+||++++|.+++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999998888888888899999999999999999999999 999999999987776652
Q ss_pred -CCCCeEEEEecCCCC--cceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeE
Q 048801 326 -HTGAVTAIAFSPRPS--AIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILC 402 (1715)
Q Consensus 326 -H~~~VtsLafSPdg~--~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vts 402 (1715)
.......+.|+.++. ..++++....-+.|+.|++........+ ...........|.+
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l--------------------~~~~~~~~~~siSs 286 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL--------------------RLRKKIKRFKSISS 286 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc--------------------chhhhhhccCccee
Confidence 334566788887762 2223344455667887776533211000 00111112346999
Q ss_pred EEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCC
Q 048801 403 CAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNS 482 (1715)
Q Consensus 403 lafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s 482 (1715)
++.+.+|+++|.|+.||.|.|++..+.+. ....-..|...|+.+.|+|+.
T Consensus 287 l~VS~dGkf~AlGT~dGsVai~~~~~lq~--------~~~vk~aH~~~VT~ltF~Pds---------------------- 336 (398)
T KOG0771|consen 287 LAVSDDGKFLALGTMDGSVAIYDAKSLQR--------LQYVKEAHLGFVTGLTFSPDS---------------------- 336 (398)
T ss_pred EEEcCCCcEEEEeccCCcEEEEEeceeee--------eEeehhhheeeeeeEEEcCCc----------------------
Confidence 99999999999999999999999976422 234456899999999999986
Q ss_pred cccCceEEEEcCCCeEEEEecC
Q 048801 483 WFCHDNIVTCSRDGSAIIWIPR 504 (1715)
Q Consensus 483 ~~~~~~LaSgS~DGsIrIWDl~ 504 (1715)
..+++.+.|..+.|..+.
T Consensus 337 ----r~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 337 ----RYLASVSSDNEAAVTKLA 354 (398)
T ss_pred ----CcccccccCCceeEEEEe
Confidence 567777777777776554
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.3e-12 Score=157.68 Aligned_cols=235 Identities=17% Similarity=0.110 Sum_probs=160.0
Q ss_pred CCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC---CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCC
Q 048801 264 DRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND---FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPS 340 (1715)
Q Consensus 264 DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D---GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~ 340 (1715)
+..|.|||..... .+.+..|...|.+++|||||+.||.++.+ ..|++||+.++.... +....+...+++|+|++.
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCC
Confidence 5789999986544 56778888899999999999999987654 469999998876432 222223345789999998
Q ss_pred cceEEEEe-cCCCcEEEE--ecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-
Q 048801 341 AIYQLLSS-SDDGTCRIW--DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS- 416 (1715)
Q Consensus 341 ~~~~LaSg-S~DGtVrIW--Dl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs- 416 (1715)
.|+.+ +.+|.+.|| |+.++.. ..+ ..+...+.+.+|+|||+.|+.++
T Consensus 261 ---~La~~~~~~g~~~Iy~~d~~~~~~-~~l-------------------------t~~~~~~~~~~wSpDG~~i~f~s~ 311 (429)
T PRK01742 261 ---RLAFASSKDGVLNIYVMGANGGTP-SQL-------------------------TSGAGNNTEPSWSPDGQSILFTSD 311 (429)
T ss_pred ---EEEEEEecCCcEEEEEEECCCCCe-Eee-------------------------ccCCCCcCCEEECCCCCEEEEEEC
Confidence 55554 568876666 5544432 111 11233467899999999777554
Q ss_pred CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC
Q 048801 417 SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG 496 (1715)
Q Consensus 417 ~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG 496 (1715)
.+|...||++..... ....+ .+.. .++.|+|++ +.|+.++.++
T Consensus 312 ~~g~~~I~~~~~~~~--------~~~~l-~~~~--~~~~~SpDG--------------------------~~ia~~~~~~ 354 (429)
T PRK01742 312 RSGSPQVYRMSASGG--------GASLV-GGRG--YSAQISADG--------------------------KTLVMINGDN 354 (429)
T ss_pred CCCCceEEEEECCCC--------CeEEe-cCCC--CCccCCCCC--------------------------CEEEEEcCCC
Confidence 578888888753211 11112 2332 356788886 6777776665
Q ss_pred eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEEC--
Q 048801 497 SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA-- 574 (1715)
Q Consensus 497 sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl-- 574 (1715)
+.+||+.++.... +... .....+.|+|||++|++++.++.+.+|.+
T Consensus 355 -i~~~Dl~~g~~~~------------------------------lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~ 402 (429)
T PRK01742 355 -VVKQDLTSGSTEV------------------------------LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVS 402 (429)
T ss_pred -EEEEECCCCCeEE------------------------------ecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 5558887643110 0000 01234689999999999999998888875
Q ss_pred CCCceEEEEecCCCCeEEEEEccC
Q 048801 575 VDGSLVHSLTGHSASSYVLDVHPF 598 (1715)
Q Consensus 575 ~sg~~l~tL~gH~~~V~sLafSP~ 598 (1715)
.+|..+..+.+|.+.+..++|+|.
T Consensus 403 ~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 403 ADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCceEEccCCCCCCCCcccCCC
Confidence 468889999999998999999983
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.7e-11 Score=147.04 Aligned_cols=315 Identities=13% Similarity=0.079 Sum_probs=184.9
Q ss_pred cccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEe-CCCe
Q 048801 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASAS-NDFV 308 (1715)
Q Consensus 230 ~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS-~DGt 308 (1715)
..+.+.+.++..+...-..++|+|||+++++++.||.|.++|+.+++.+.++.... ...++++|+||++|++++ ..+.
T Consensus 23 ~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~ 101 (369)
T PF02239_consen 23 GATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGT 101 (369)
T ss_dssp TTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTE
T ss_pred CCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCc
Confidence 34567788887665544557899999999999999999999999999999998644 467899999999998776 5899
Q ss_pred eEEEECCCCCceEEEeCC-------CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCcc
Q 048801 309 IRVWRLPDGLPISVLRGH-------TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKS 381 (1715)
Q Consensus 309 IrVWDl~tg~~l~~L~gH-------~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~ 381 (1715)
|.|+|..+.++++.+... ...+.+|..+|.... ++++.-..+.|.+.|......+.....
T Consensus 102 v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~--fVv~lkd~~~I~vVdy~d~~~~~~~~i----------- 168 (369)
T PF02239_consen 102 VSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE--FVVNLKDTGEIWVVDYSDPKNLKVTTI----------- 168 (369)
T ss_dssp EEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE--EEEEETTTTEEEEEETTTSSCEEEEEE-----------
T ss_pred eeEeccccccceeecccccccccccCCCceeEEecCCCCE--EEEEEccCCeEEEEEeccccccceeee-----------
Confidence 999999999999887643 346778888888762 344445558787778765432211111
Q ss_pred CCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEe-cCCCeEEEEeCCCCCccCCCCCceeeee-ecCCCCCeeEEEEccC
Q 048801 382 NVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG-SSDTFARVWSACKSSVEDSEQPIHELDV-LSGHENDVNYVQFSGC 459 (1715)
Q Consensus 382 ~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatG-s~DG~IrVWDl~t~~~~~~~~~~~~l~~-l~gH~~~V~sLafspd 459 (1715)
..........|+|++++++++ .....|.++|..+++.. ..+.. -..|..++..+ .+|.
T Consensus 169 -------------~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v------~~i~~g~~p~~~~~~~~-php~ 228 (369)
T PF02239_consen 169 -------------KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV------ALIDTGKKPHPGPGANF-PHPG 228 (369)
T ss_dssp -------------E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE------EEEE-SSSBEETTEEEE-EETT
T ss_pred -------------cccccccccccCcccceeeecccccceeEEEeeccceEE------EEeeccccccccccccc-cCCC
Confidence 012235678999999987664 55678999998775321 01110 01122333322 1221
Q ss_pred cccccccccccccccccccccCCcc---cCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCC
Q 048801 460 AVASRSAMSDAFKEENVPKFKNSWF---CHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536 (1715)
Q Consensus 460 g~as~~~~~~~~~~~~~~~~~~s~~---~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 536 (1715)
. ...|. .....++.-....+.+|+..+. .
T Consensus 229 ~-------------------g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w-----------------------------k 260 (369)
T PF02239_consen 229 F-------------------GPVWATSGLGYFAIPLIGTDPVSVHDDYAW-----------------------------K 260 (369)
T ss_dssp T-------------------EEEEEEEBSSSSEEEEEE--TTT-STTTBT-----------------------------S
T ss_pred c-------------------ceEEeeccccceecccccCCccccchhhcC-----------------------------e
Confidence 1 00000 0011111111112223333321 1
Q ss_pred CcccccCCCCCeeEEEeCCCCCEEEEE----ecCCeEEEEECCCCceEEEEecC-CCCeEEEEEccCCCcEEEEEeCCC-
Q 048801 537 PRQRLLPTPRGVNMIVWSLDNRFVLAA----IMDCRICVWNAVDGSLVHSLTGH-SASSYVLDVHPFNPRIAMSAGYDG- 610 (1715)
Q Consensus 537 ~~~~l~~h~~~VtslafSPDG~~LaTg----s~DGtI~IWDl~sg~~l~tL~gH-~~~V~sLafSP~dg~lLaSgs~DG- 610 (1715)
.+..+.....+ .-+..+|++++|.+. .....|.|+|..+.+.+.++... ...+..+.|++++..+.+|....+
T Consensus 261 vv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~ 339 (369)
T PF02239_consen 261 VVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNG 339 (369)
T ss_dssp EEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TT
T ss_pred EEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCC
Confidence 22233333334 667889999999987 44579999999999888887532 335889999996666666655544
Q ss_pred cEEEEECCCCceEEEEE
Q 048801 611 RTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 611 tI~VWDl~tgk~l~tl~ 627 (1715)
.|.|||..+.+.+..+.
T Consensus 340 ~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 340 AIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCcEEEEEEE
Confidence 89999999999998887
|
... |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.4e-11 Score=143.05 Aligned_cols=321 Identities=16% Similarity=0.212 Sum_probs=206.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEE-----eCC-----CeeEEEE
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASA-----SND-----FVIRVWR 313 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASG-----S~D-----GtIrVWD 313 (1715)
..++..+++++|+++|.+. +..|+|++..++..+.+.... .++++.|||.|.+|.+- ..+ ..+.+|+
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 3467788999998888764 578999999888655444433 78999999999998863 122 3577999
Q ss_pred CCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCC
Q 048801 314 LPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393 (1715)
Q Consensus 314 l~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~ 393 (1715)
+.++.....+......-+++.|+.|.. |++--..+.|.+|++...+.. ..
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dEs----l~arlv~nev~f~~~~~f~~~--------------------------~~ 161 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDES----LAARLVSNEVQFYDLGSFKTI--------------------------QH 161 (566)
T ss_pred eccceehhheehhhhcCcccccccchh----hhhhhhcceEEEEecCCccce--------------------------ee
Confidence 999665555543333336899999875 333334567999998753211 11
Q ss_pred CCCCcceeEEEEccCCC--eEEE-----ecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccc
Q 048801 394 GLQSHQILCCAYNANGT--VFVT-----GSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSA 466 (1715)
Q Consensus 394 ~~h~~~VtslafSpdG~--~Lat-----Gs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~ 466 (1715)
..|...|+.+.++|.+. .+|+ ++.-+.|+||...-... .++......+ ...-..+.|++.+.
T Consensus 162 kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~---~~~~a~ksFF---kadkvqm~WN~~gt----- 230 (566)
T KOG2315|consen 162 KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ---HQPVANKSFF---KADKVQMKWNKLGT----- 230 (566)
T ss_pred eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc---cchhhhcccc---ccceeEEEeccCCc-----
Confidence 23456688899998743 3433 34567899998762211 1111111111 11122345555441
Q ss_pred ccccccccccccccCCcccCceEEEEc--CC---------CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCC
Q 048801 467 MSDAFKEENVPKFKNSWFCHDNIVTCS--RD---------GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRG 535 (1715)
Q Consensus 467 ~~~~~~~~~~~~~~~s~~~~~~LaSgS--~D---------GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 535 (1715)
.+|+.++ -| .++.+.++. +
T Consensus 231 --------------------~LLvLastdVDktn~SYYGEq~Lyll~t~------------------------------g 260 (566)
T KOG2315|consen 231 --------------------ALLVLASTDVDKTNASYYGEQTLYLLATQ------------------------------G 260 (566)
T ss_pred --------------------eEEEEEEEeecCCCccccccceEEEEEec------------------------------C
Confidence 2222222 22 233333333 1
Q ss_pred CCcccccCCCCCeeEEEeCCCCCEEEE--EecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeC---CC
Q 048801 536 GPRQRLLPTPRGVNMIVWSLDNRFVLA--AIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGY---DG 610 (1715)
Q Consensus 536 ~~~~~l~~h~~~VtslafSPDG~~LaT--gs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~---DG 610 (1715)
.....-....++|.++.|+|+|+-+++ |-+=..|.|+|+ .+.++..+ ..++-+++-|+| .+++|+.+|- -|
T Consensus 261 ~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G 336 (566)
T KOG2315|consen 261 ESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPG 336 (566)
T ss_pred ceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCC
Confidence 112222334788999999999987655 556678999997 45666555 456667899999 5666666664 47
Q ss_pred cEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCccc
Q 048801 611 RTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDD------VGQIYLLNTGQGESQ 665 (1715)
Q Consensus 611 tI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~------DG~I~IWdl~tGe~~ 665 (1715)
.|-|||+.+.+++..+.... .+-+.|+|||.+|+++.. |+.+.||+. +|..+
T Consensus 337 ~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l 394 (566)
T KOG2315|consen 337 DMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLL 394 (566)
T ss_pred ceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCcee
Confidence 89999999999999887443 455799999999998854 678899997 55443
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-11 Score=158.20 Aligned_cols=280 Identities=16% Similarity=0.218 Sum_probs=190.4
Q ss_pred EECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 312 WRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 312 WDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
|++ .|..++.+..|...|..++.++.... ++++||.||+|++|+++....-.. ......
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s--~FvsgS~DGtVKvW~~~k~~~~~~------------------s~rS~l 1092 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTS--LFVSGSDDGTVKVWNLRKLEGEGG------------------SARSEL 1092 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCc--eEEEecCCceEEEeeehhhhcCcc------------------eeeeeE
Confidence 664 57888999999999999999987743 899999999999999864321100 000011
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC--CeeEEEEccCcccccccccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN--DVNYVQFSGCAVASRSAMSD 469 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~--~V~sLafspdg~as~~~~~~ 469 (1715)
.....+..+.++.+.+.|..+|+|+.||.|++.++..... .............+.. .|..-+|....
T Consensus 1093 tys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~--~~~~~~~~ri~n~~~~g~vv~m~a~~~~~--------- 1161 (1431)
T KOG1240|consen 1093 TYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV--SKRVATQVRIPNLKKDGVVVSMHAFTAIV--------- 1161 (1431)
T ss_pred EEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc--ccceeeeeecccccCCCceEEeecccccc---------
Confidence 1112456789999999999999999999999999865211 0000111111111111 12222222211
Q ss_pred cccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCee
Q 048801 470 AFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVN 549 (1715)
Q Consensus 470 ~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vt 549 (1715)
....++.+..-+.|..||+++... .|.. ......+.|+
T Consensus 1162 ---------------~S~~lvy~T~~~~iv~~D~r~~~~-----~w~l----------------------k~~~~hG~vT 1199 (1431)
T KOG1240|consen 1162 ---------------QSHVLVYATDLSRIVSWDTRMRHD-----AWRL----------------------KNQLRHGLVT 1199 (1431)
T ss_pred ---------------cceeEEEEEeccceEEecchhhhh-----HHhh----------------------hcCcccccee
Confidence 013788888999999999986331 1111 1223456799
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe-cCCCCeEEEEEccCCC--cEEEEEe--CCCcEEEEECCCCceEE
Q 048801 550 MIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT-GHSASSYVLDVHPFNP--RIAMSAG--YDGRTIVWDIWEGTPIR 624 (1715)
Q Consensus 550 slafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~-gH~~~V~sLafSP~dg--~lLaSgs--~DGtI~VWDl~tgk~l~ 624 (1715)
+++.+|.+.++++|+..|.+.+||++-+.++.... ++..++..+..+|.-+ ...++++ ..+.|-+|++.+|.+..
T Consensus 1200 Si~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1200 SIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQT 1279 (1431)
T ss_pred EEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceE
Confidence 99999999999999999999999999888887764 5668889998888665 4555544 46789999999998777
Q ss_pred EEEcccc-------------------eEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 625 IYEIGRF-------------------KLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 625 tl~~h~~-------------------~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
++..... ....+.+..-+..+.+|+.|+.|+.||....+..
T Consensus 1280 vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1280 VLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred EEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 7764310 1122344445667889999999999998766433
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-11 Score=144.43 Aligned_cols=288 Identities=16% Similarity=0.155 Sum_probs=192.1
Q ss_pred CCCCCeEEEEECCCCCEE-EEEeCCCeeEEEECCCCCceEEEeCC-CCC-eEEEEecCCCCcceEEEEecCCCcEEEEec
Q 048801 283 GHEGDITDLAVSSNNTLV-ASASNDFVIRVWRLPDGLPISVLRGH-TGA-VTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359 (1715)
Q Consensus 283 gHs~~VtsLafSpDg~lL-ASGS~DGtIrVWDl~tg~~l~~L~gH-~~~-VtsLafSPdg~~~~~LaSgS~DGtVrIWDl 359 (1715)
.|...-+.|..+|||+|| |+|...-.|+|||+.+...- +.-| ... |.-.-.+.|-. .++.-..|.+|-+..-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~S---K~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYS---KSVFLQNDRTIEFHAK 123 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchh---hheEeecCceeeehhh
Confidence 477788999999999976 56667889999999765432 2223 233 33333343332 4555566777776543
Q ss_pred CCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC-CCeEEEecCCCeEEEEeCCCCCccCCCCCc
Q 048801 360 RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN-GTVFVTGSSDTFARVWSACKSSVEDSEQPI 438 (1715)
Q Consensus 360 ~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd-G~~LatGs~DG~IrVWDl~t~~~~~~~~~~ 438 (1715)
.... ..+.+|. .-..++++.- ..++++| ....|+-+++..|.
T Consensus 124 ~G~h--y~~RIP~--------------------------~GRDm~y~~~scDly~~g-sg~evYRlNLEqGr-------- 166 (703)
T KOG2321|consen 124 YGRH--YRTRIPK--------------------------FGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGR-------- 166 (703)
T ss_pred cCee--eeeecCc--------------------------CCccccccCCCccEEEee-cCcceEEEEccccc--------
Confidence 2111 1111111 1234555433 3344444 45667777887654
Q ss_pred eeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccc
Q 048801 439 HELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRA 518 (1715)
Q Consensus 439 ~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~ 518 (1715)
.+..+....+.+++|..++. +.+|++|+.+|.|-.||.++...++.+.....
T Consensus 167 -fL~P~~~~~~~lN~v~in~~--------------------------hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~- 218 (703)
T KOG2321|consen 167 -FLNPFETDSGELNVVSINEE--------------------------HGLLACGTEDGVVEFWDPRDKSRVGTLDAASS- 218 (703)
T ss_pred -cccccccccccceeeeecCc--------------------------cceEEecccCceEEEecchhhhhheeeecccc-
Confidence 34555666688999999886 47899999999999999998665444311100
Q ss_pred ccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe-cCCCCeEEEEEcc
Q 048801 519 YHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT-GHSASSYVLDVHP 597 (1715)
Q Consensus 519 ~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~-gH~~~V~sLafSP 597 (1715)
+... ........|+++.|+.+|-.+++|+.+|.|.|||+++.+++..-. +..-+|..+.|.+
T Consensus 219 ----v~s~-------------pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 219 ----VNSH-------------PGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred ----cCCC-------------ccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccc
Confidence 0000 001112349999999999999999999999999999988776543 4456788999977
Q ss_pred CCC-cEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 598 FNP-RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 598 ~dg-~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
.++ ..|+| .....++|||-.+|+....+. ....+.++|+-|++.+++++-+++.+..|=+
T Consensus 282 ~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 282 TDQQNKVVS-MDKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred cCCCceEEe-cchHHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEecCCCcceeEEc
Confidence 543 34444 455689999999999999887 4456999999999999999988776666554
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-12 Score=152.81 Aligned_cols=281 Identities=12% Similarity=0.176 Sum_probs=213.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCC
Q 048801 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQY 364 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~ 364 (1715)
...-+.+.++.+|++|+.|+..|.|..+|+.++.+...+. -...|.++.|..+.. +++......+.|||-..-+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq----~~AVAQK~y~yvYD~~GtE- 202 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQ----FFAVAQKKYVYVYDNNGTE- 202 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchH----HHHhhhhceEEEecCCCcE-
Confidence 3455678999999999999999999999999999888776 456789999988764 4445556789999864322
Q ss_pred cceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee
Q 048801 365 SPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL 444 (1715)
Q Consensus 365 l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l 444 (1715)
+..+. ....|..+.|.|..-+|++++..|.++.-|+.++++ +..+
T Consensus 203 lHClk--------------------------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl---------Va~~ 247 (545)
T KOG1272|consen 203 LHCLK--------------------------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL---------VASI 247 (545)
T ss_pred Eeehh--------------------------hcCchhhhcccchhheeeecccCCceEEEeechhhh---------hHHH
Confidence 22221 134578899999999999999999999999998764 4444
Q ss_pred cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCC
Q 048801 445 SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVP 524 (1715)
Q Consensus 445 ~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~ 524 (1715)
....+.+..+.-+|-. ..+-+|...|+|.+|...+
T Consensus 248 ~t~~G~~~vm~qNP~N--------------------------aVih~GhsnGtVSlWSP~s------------------- 282 (545)
T KOG1272|consen 248 RTGAGRTDVMKQNPYN--------------------------AVIHLGHSNGTVSLWSPNS------------------- 282 (545)
T ss_pred HccCCccchhhcCCcc--------------------------ceEEEcCCCceEEecCCCC-------------------
Confidence 5555667777777643 4777899999999997764
Q ss_pred CCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEE
Q 048801 525 PPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAM 604 (1715)
Q Consensus 525 ~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLa 604 (1715)
..++..+..|.++|.+|++.++|+|+||.+.|..|+|||++....+.++.. .-+...++||. +-++
T Consensus 283 ----------kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq---kglL 348 (545)
T KOG1272|consen 283 ----------KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ---KGLL 348 (545)
T ss_pred ----------cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccc---ccce
Confidence 235667888999999999999999999999999999999999887777765 34556788865 3334
Q ss_pred EEeCCCcEEEEE-CCC--CceEEEEEcc--cceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 605 SAGYDGRTIVWD-IWE--GTPIRIYEIG--RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 605 Sgs~DGtI~VWD-l~t--gk~l~tl~~h--~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
+++....|.||. .-. +..-..+-.| .+.|.++.|+|-...|-+|-..|.-.|.=.+.|+.-
T Consensus 349 A~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN 414 (545)
T KOG1272|consen 349 ALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPN 414 (545)
T ss_pred eeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCCCC
Confidence 456666899995 222 1222222222 347899999999999999988888888877888643
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.1e-10 Score=141.29 Aligned_cols=234 Identities=14% Similarity=0.072 Sum_probs=151.4
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEe---cCCCcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS---SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSg---S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
.|.+||.+... ...+..+...+.+.+|+|+++ .|+.. ..+..|.+|++.+++.......
T Consensus 180 ~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~---~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-------------- 241 (429)
T PRK03629 180 ELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGS---KLAYVTFESGRSALVIQTLANGAVRQVASF-------------- 241 (429)
T ss_pred eEEEEcCCCCC-CEEeecCCCceeeeEEcCCCC---EEEEEEecCCCcEEEEEECCCCCeEEccCC--------------
Confidence 68899986544 445555777899999999998 44433 2345799999987653211100
Q ss_pred CCCCCCCCCCCCCcceeEEEEccCCCeEEEe-cCCC--eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcc
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNANGTVFVTG-SSDT--FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAV 461 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSpdG~~LatG-s~DG--~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~ 461 (1715)
...+..++|+|||+.|+.. +.+| .|++||+.++. +..+..+...+....|+|++
T Consensus 242 ------------~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~----------~~~lt~~~~~~~~~~wSPDG- 298 (429)
T PRK03629 242 ------------PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----------IRQVTDGRSNNTEPTWFPDS- 298 (429)
T ss_pred ------------CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC----------EEEccCCCCCcCceEECCCC-
Confidence 1123457999999988764 3344 58889987643 22333444567789999987
Q ss_pred cccccccccccccccccccCCcccCceEEEEcC-CCeEEEE--ecCCCccCcccccccccccccCCCCCCCCCCCCCCCc
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR-DGSAIIW--IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPR 538 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~-DGsIrIW--Dl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 538 (1715)
+.|+.++. +|...|| ++.++. .
T Consensus 299 -------------------------~~I~f~s~~~g~~~Iy~~d~~~g~------------------------------~ 323 (429)
T PRK03629 299 -------------------------QNLAYTSDQAGRPQVYKVNINGGA------------------------------P 323 (429)
T ss_pred -------------------------CEEEEEeCCCCCceEEEEECCCCC------------------------------e
Confidence 55655544 4555555 444321 1
Q ss_pred ccccCCCCCeeEEEeCCCCCEEEEEecC---CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCc---E
Q 048801 539 QRLLPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGR---T 612 (1715)
Q Consensus 539 ~~l~~h~~~VtslafSPDG~~LaTgs~D---GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGt---I 612 (1715)
..+..........+|+|||++|+..+.+ ..|++||+.+++.. .+... .......|+| ++++|+.++.++. +
T Consensus 324 ~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~Sp-DG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 324 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAP-NGTMVIYSSSQGMGSVL 400 (429)
T ss_pred EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECC-CCCEEEEEEcCCCceEE
Confidence 1111122334568999999999886644 35889999888643 34322 2234678999 6666666666654 6
Q ss_pred EEEECCCCceEEEEEcccceEEEEEEcCC
Q 048801 613 IVWDIWEGTPIRIYEIGRFKLVDGKFSPD 641 (1715)
Q Consensus 613 ~VWDl~tgk~l~tl~~h~~~V~svafSPD 641 (1715)
.+|++ +|.....+..+.+.+...+|+|-
T Consensus 401 ~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 401 NLVST-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred EEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence 77787 67777777777778888999873
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.1e-11 Score=140.66 Aligned_cols=197 Identities=12% Similarity=0.129 Sum_probs=143.8
Q ss_pred ccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee--cCCCCCeeEEEEccCcccccccccccccccccccccCCc
Q 048801 406 NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL--SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW 483 (1715)
Q Consensus 406 SpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l--~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~ 483 (1715)
.+.|--|++|-.-|.|.++|...... ..+... .-....|+|+.|-|..
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~-------sklfne~r~i~ktsvT~ikWvpg~----------------------- 231 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEV-------SKLFNEERLINKSSVTCIKWVPGS----------------------- 231 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHH-------HHhhhhcccccccceEEEEEEeCC-----------------------
Confidence 45676788888889999988754221 000001 1123689999999875
Q ss_pred ccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCC----CCCCCCCcccccCCCCCeeEEEeCCCCCE
Q 048801 484 FCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPP----QPPRGGPRQRLLPTPRGVNMIVWSLDNRF 559 (1715)
Q Consensus 484 ~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~g~~~~~l~~h~~~VtslafSPDG~~ 559 (1715)
...++.+-.+|.+.+||..-. .+.-...+...-.+..... ......++.......+.|+.++|||||++
T Consensus 232 --~~~Fl~a~~sGnlyly~~~~~-----~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~ 304 (636)
T KOG2394|consen 232 --DSLFLVAHASGNLYLYDKEIV-----CGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKY 304 (636)
T ss_pred --CceEEEEEecCceEEeecccc-----ccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCce
Confidence 468888889999999976310 0000000000000000000 01111445555556678999999999999
Q ss_pred EEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEc
Q 048801 560 VLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFS 639 (1715)
Q Consensus 560 LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafS 639 (1715)
||+.+.||.++|||+.+.+++..++..-+...|++||| |+++|++||.|--|.||.+..++.+..-++|...|..|+|.
T Consensus 305 LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 305 LATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 99999999999999999999888888888999999999 88999999999999999999999999999999999999998
Q ss_pred C
Q 048801 640 P 640 (1715)
Q Consensus 640 P 640 (1715)
|
T Consensus 384 p 384 (636)
T KOG2394|consen 384 P 384 (636)
T ss_pred c
Confidence 5
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.6e-10 Score=143.03 Aligned_cols=234 Identities=12% Similarity=0.022 Sum_probs=153.8
Q ss_pred CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC---CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCc
Q 048801 265 RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN---DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSA 341 (1715)
Q Consensus 265 GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~---DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~ 341 (1715)
..|.+||...... +.+..+...+.+.+|||||+.||..+. +..|.+|++.+|+... +....+.+..++|+|++.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~- 255 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGS- 255 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCC-
Confidence 3688999875543 445557778999999999999987643 4579999998876433 333344456789999998
Q ss_pred ceEEE-EecCCC--cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC
Q 048801 342 IYQLL-SSSDDG--TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD 418 (1715)
Q Consensus 342 ~~~La-SgS~DG--tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D 418 (1715)
.|+ +.+.+| .|.+||+.++.... +. .+...+...+|+|||+.|+..+.+
T Consensus 256 --~La~~~~~~g~~~I~~~d~~tg~~~~-lt-------------------------~~~~~~~~~~wSPDG~~I~f~s~~ 307 (429)
T PRK03629 256 --KLAFALSKTGSLNLYVMDLASGQIRQ-VT-------------------------DGRSNNTEPTWFPDSQNLAYTSDQ 307 (429)
T ss_pred --EEEEEEcCCCCcEEEEEECCCCCEEE-cc-------------------------CCCCCcCceEECCCCCEEEEEeCC
Confidence 444 334454 58889988765321 10 012235678999999988776653
Q ss_pred -CeEEEE--eCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC-
Q 048801 419 -TFARVW--SACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR- 494 (1715)
Q Consensus 419 -G~IrVW--Dl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~- 494 (1715)
+...|| ++.++. ...+..+...+....|+|++ +.|+..+.
T Consensus 308 ~g~~~Iy~~d~~~g~----------~~~lt~~~~~~~~~~~SpDG--------------------------~~Ia~~~~~ 351 (429)
T PRK03629 308 AGRPQVYKVNINGGA----------PQRITWEGSQNQDADVSSDG--------------------------KFMVMVSSN 351 (429)
T ss_pred CCCceEEEEECCCCC----------eEEeecCCCCccCEEECCCC--------------------------CEEEEEEcc
Confidence 444555 554432 12223333445678899987 55655443
Q ss_pred C--CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCe---E
Q 048801 495 D--GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCR---I 569 (1715)
Q Consensus 495 D--GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGt---I 569 (1715)
+ ..|.+||+.++... .+.. ........|+|||++|+.++.++. +
T Consensus 352 ~g~~~I~~~dl~~g~~~------------------------------~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 352 GGQQHIAKQDLATGGVQ------------------------------VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred CCCceEEEEECCCCCeE------------------------------EeCC-CCCCCCceECCCCCEEEEEEcCCCceEE
Confidence 3 35778888754311 0000 111235689999999999887764 6
Q ss_pred EEEECCCCceEEEEecCCCCeEEEEEcc
Q 048801 570 CVWNAVDGSLVHSLTGHSASSYVLDVHP 597 (1715)
Q Consensus 570 ~IWDl~sg~~l~tL~gH~~~V~sLafSP 597 (1715)
.++++ +|.....+.+|.+.+...+|+|
T Consensus 401 ~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 401 NLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 77777 6777788888888899999988
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.3e-10 Score=139.39 Aligned_cols=235 Identities=15% Similarity=0.066 Sum_probs=148.5
Q ss_pred CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec---CCCcEEEEecCCCCCcceecCCCCCCCccCccCC
Q 048801 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS---DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS---~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~ 383 (1715)
..|.+||.. +.....+..+...+.+.+|+|++. .|+..+ ....|.+||+.+++......
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~---~la~~s~~~~~~~l~~~dl~~g~~~~l~~-------------- 245 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGK---KLAYVSFERGRSAIYVQDLATGQRELVAS-------------- 245 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCC---EEEEEecCCCCcEEEEEECCCCCEEEecc--------------
Confidence 468999985 555566767788899999999998 555554 23469999998765321110
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccCCCeEEE-ecCCC--eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCc
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNANGTVFVT-GSSDT--FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpdG~~Lat-Gs~DG--~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg 460 (1715)
......+++|+|+|+.|+. .+.+| .|++||+.++. +..+..+.......+|+|++
T Consensus 246 ------------~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~----------~~~lt~~~~~~~~~~~spDG 303 (433)
T PRK04922 246 ------------FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ----------LTRLTNHFGIDTEPTWAPDG 303 (433)
T ss_pred ------------CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC----------eEECccCCCCccceEECCCC
Confidence 0112346899999987754 44444 59999987653 23344454455678999987
Q ss_pred ccccccccccccccccccccCCcccCceEEEEc-CCCe--EEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RDGS--AIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~DGs--IrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 537 (1715)
..|+.++ .+|. |.++++.++.
T Consensus 304 --------------------------~~l~f~sd~~g~~~iy~~dl~~g~------------------------------ 327 (433)
T PRK04922 304 --------------------------KSIYFTSDRGGRPQIYRVAASGGS------------------------------ 327 (433)
T ss_pred --------------------------CEEEEEECCCCCceEEEEECCCCC------------------------------
Confidence 4555444 4555 4445554322
Q ss_pred cccccCCCCCeeEEEeCCCCCEEEEEecCC---eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCC--CcE
Q 048801 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYD--GRT 612 (1715)
Q Consensus 538 ~~~l~~h~~~VtslafSPDG~~LaTgs~DG---tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~D--GtI 612 (1715)
...+.........++|||||++|+..+.++ .|.+||+.+++.. .+. +......+.|+|++..++++.... +.|
T Consensus 328 ~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L 405 (433)
T PRK04922 328 AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVL 405 (433)
T ss_pred eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEE
Confidence 011111122344689999999998765443 6999999888765 443 223445679999544444444433 357
Q ss_pred EEEECCCCceEEEEEcccceEEEEEEcC
Q 048801 613 IVWDIWEGTPIRIYEIGRFKLVDGKFSP 640 (1715)
Q Consensus 613 ~VWDl~tgk~l~tl~~h~~~V~svafSP 640 (1715)
.++++ +|.....+..+.+.+...+|+|
T Consensus 406 ~~~~~-~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 406 AAVST-DGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEEC-CCCceEEcccCCCCCCCCccCC
Confidence 78887 4555666655556677788887
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-09 Score=122.36 Aligned_cols=239 Identities=13% Similarity=0.188 Sum_probs=157.0
Q ss_pred CeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCC--CeEEEEecCCCCcceEEEEecCC------CcEEEEe
Q 048801 287 DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTG--AVTAIAFSPRPSAIYQLLSSSDD------GTCRIWD 358 (1715)
Q Consensus 287 ~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~--~VtsLafSPdg~~~~~LaSgS~D------GtVrIWD 358 (1715)
....++|+.|..-+++|..+| .+||+++--+.......+.+ .+..+-|-.+ ++.+.||.+ ..|.|||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N----~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSN----YLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhc----eEEEecCCCCCCCCCceEEEEe
Confidence 345599999999999887775 89999875433222222222 2233333322 133444443 5799999
Q ss_pred cCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCc
Q 048801 359 ARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPI 438 (1715)
Q Consensus 359 l~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~ 438 (1715)
-....++..+.+ ..+|.++.+.++ .||+. ..+.|.||...+. .
T Consensus 82 D~k~~~i~el~f--------------------------~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n--------~ 124 (346)
T KOG2111|consen 82 DLKERCIIELSF--------------------------NSEIKAVKLRRD--RIVVV-LENKIYVYTFPDN--------P 124 (346)
T ss_pred cccCcEEEEEEe--------------------------ccceeeEEEcCC--eEEEE-ecCeEEEEEcCCC--------h
Confidence 554444444332 456889999876 34444 3688999998632 1
Q ss_pred eeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEE-EcCCCeEEEEecCCCccCcccccccc
Q 048801 439 HELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVT-CSRDGSAIIWIPRSRRSHGKVGRWTR 517 (1715)
Q Consensus 439 ~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaS-gS~DGsIrIWDl~t~~~~~~~~~~~~ 517 (1715)
+.+..+....++---++..|... ...||. |-.-|.|+|-|+.....
T Consensus 125 k~l~~~et~~NPkGlC~~~~~~~------------------------k~~LafPg~k~GqvQi~dL~~~~~--------- 171 (346)
T KOG2111|consen 125 KLLHVIETRSNPKGLCSLCPTSN------------------------KSLLAFPGFKTGQVQIVDLASTKP--------- 171 (346)
T ss_pred hheeeeecccCCCceEeecCCCC------------------------ceEEEcCCCccceEEEEEhhhcCc---------
Confidence 22222222221111222233210 123333 34568999998874220
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCe-EEEEECCCCceEEEEec--CCCCeEEEE
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCR-ICVWNAVDGSLVHSLTG--HSASSYVLD 594 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGt-I~IWDl~sg~~l~tL~g--H~~~V~sLa 594 (1715)
.+-..+.+|...|.|++++.+|..|||++..|+ |+|||..+|+++..++. ....|++|+
T Consensus 172 ------------------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ia 233 (346)
T KOG2111|consen 172 ------------------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIA 233 (346)
T ss_pred ------------------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEE
Confidence 122457789999999999999999999999997 79999999999999974 345799999
Q ss_pred EccCCCcEEEEEeCCCcEEEEECCC
Q 048801 595 VHPFNPRIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 595 fSP~dg~lLaSgs~DGtI~VWDl~t 619 (1715)
||| +..+|+.++..|+|+|+.+..
T Consensus 234 FSp-~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 234 FSP-NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eCC-CccEEEEEcCCCeEEEEEeec
Confidence 999 888999999999999998865
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-10 Score=138.82 Aligned_cols=245 Identities=17% Similarity=0.182 Sum_probs=159.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEE------EecCCCCCeEEEEE-----CCCCCEEEEEeCCCeeEEEE
Q 048801 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLA------SCRGHEGDITDLAV-----SSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~------tL~gHs~~VtsLaf-----SpDg~lLASGS~DGtIrVWD 313 (1715)
.++...++-.|.+|+..-. ..+.+|+...+..+. .+.+ ...+|-+| .+.+--|+.|-.-|.|.+.|
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccC--CCCceecccccccCCCCcceEEeeccCceEEec
Confidence 3444455556666655422 357788776432211 1221 12234444 34677788888889999998
Q ss_pred CCCCCceEEEe----CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCC
Q 048801 314 LPDGLPISVLR----GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 314 l~tg~~l~~L~----gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
.......+.+. -....|+|+.|.|.+.. .++.+-.+|.+.++|..... .
T Consensus 202 p~~~~~sklfne~r~i~ktsvT~ikWvpg~~~--~Fl~a~~sGnlyly~~~~~~---~---------------------- 254 (636)
T KOG2394|consen 202 PINFEVSKLFNEERLINKSSVTCIKWVPGSDS--LFLVAHASGNLYLYDKEIVC---G---------------------- 254 (636)
T ss_pred chhhHHHHhhhhcccccccceEEEEEEeCCCc--eEEEEEecCceEEeeccccc---c----------------------
Confidence 76522211111 13468999999998775 67788889999999872110 0
Q ss_pred CCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccc
Q 048801 390 SSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSD 469 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~ 469 (1715)
..-.+....+++..|+.....+ .. ...| +..+.--.+.|+..+|+|++
T Consensus 255 --------~t~p~~~~~k~~~~f~i~t~ks-------k~-----~rNP---v~~w~~~~g~in~f~FS~DG--------- 302 (636)
T KOG2394|consen 255 --------ATAPSYQALKDGDQFAILTSKS-------KK-----TRNP---VARWHIGEGSINEFAFSPDG--------- 302 (636)
T ss_pred --------CCCCcccccCCCCeeEEeeeec-------cc-----cCCc---cceeEeccccccceeEcCCC---------
Confidence 0001112233554444332111 00 0011 22222334589999999987
Q ss_pred cccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCee
Q 048801 470 AFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVN 549 (1715)
Q Consensus 470 ~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vt 549 (1715)
.+|++.+.||.++|||..+...++. +..--++..
T Consensus 303 -----------------~~LA~VSqDGfLRvF~fdt~eLlg~-----------------------------mkSYFGGLL 336 (636)
T KOG2394|consen 303 -----------------KYLATVSQDGFLRIFDFDTQELLGV-----------------------------MKSYFGGLL 336 (636)
T ss_pred -----------------ceEEEEecCceEEEeeccHHHHHHH-----------------------------HHhhccceE
Confidence 8999999999999999987443221 122345789
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEcc
Q 048801 550 MIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHP 597 (1715)
Q Consensus 550 slafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP 597 (1715)
|++|||||+||++|+.|--|.||.+..++.+..-.||..+|..|+|.|
T Consensus 337 CvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 337 CVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999999999999999999999999999973
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-09 Score=138.05 Aligned_cols=234 Identities=15% Similarity=0.077 Sum_probs=153.5
Q ss_pred CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC---CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCc
Q 048801 265 RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN---DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSA 341 (1715)
Q Consensus 265 GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~---DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~ 341 (1715)
..|.+||.. |...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.++.. ..+..+.+.+.+.+|+|++..
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCE
Confidence 478889985 4555667778889999999999999988764 46899999988865 445567778889999999973
Q ss_pred ceEEEEecCCCc--EEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-C
Q 048801 342 IYQLLSSSDDGT--CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-D 418 (1715)
Q Consensus 342 ~~~LaSgS~DGt--VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-D 418 (1715)
++++.+.++. |.+||+.++.... +. .+.......+|+|||+.|+..+. +
T Consensus 260 --la~~~~~~g~~~Iy~~d~~~~~~~~-Lt-------------------------~~~~~~~~~~~spDG~~i~f~s~~~ 311 (435)
T PRK05137 260 --VVMSLSQGGNTDIYTMDLRSGTTTR-LT-------------------------DSPAIDTSPSYSPDGSQIVFESDRS 311 (435)
T ss_pred --EEEEEecCCCceEEEEECCCCceEE-cc-------------------------CCCCccCceeEcCCCCEEEEEECCC
Confidence 3445565655 6677887664321 11 01223456899999998887663 3
Q ss_pred C--eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC-
Q 048801 419 T--FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD- 495 (1715)
Q Consensus 419 G--~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D- 495 (1715)
| .|++||+.++. ...+..+...+....|+|++ +.|+..+.+
T Consensus 312 g~~~Iy~~d~~g~~----------~~~lt~~~~~~~~~~~SpdG--------------------------~~ia~~~~~~ 355 (435)
T PRK05137 312 GSPQLYVMNADGSN----------PRRISFGGGRYSTPVWSPRG--------------------------DLIAFTKQGG 355 (435)
T ss_pred CCCeEEEEECCCCC----------eEEeecCCCcccCeEECCCC--------------------------CEEEEEEcCC
Confidence 3 57778876532 12233334456678899987 566554432
Q ss_pred --CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC------C
Q 048801 496 --GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD------C 567 (1715)
Q Consensus 496 --GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D------G 567 (1715)
..|.+|++.++.. ..+ .....+..+.|+|||++|+..+.+ .
T Consensus 356 ~~~~i~~~d~~~~~~------------------------------~~l-t~~~~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 356 GQFSIGVMKPDGSGE------------------------------RIL-TSGFLVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred CceEEEEEECCCCce------------------------------Eec-cCCCCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 3577777653210 000 011235668999999998876543 3
Q ss_pred eEEEEECCCCceEEEEecCCCCeEEEEEcc
Q 048801 568 RICVWNAVDGSLVHSLTGHSASSYVLDVHP 597 (1715)
Q Consensus 568 tI~IWDl~sg~~l~tL~gH~~~V~sLafSP 597 (1715)
.|+++++..+.. ..+. ..+.+...+|+|
T Consensus 405 ~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 405 KLYTVDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred eEEEEECCCCce-EEcc-CCCCccCcccCC
Confidence 588888865544 4444 344567778877
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-09 Score=122.18 Aligned_cols=296 Identities=16% Similarity=0.205 Sum_probs=180.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecC-CCCCeEEEEECCCC-CEEEEEeCCCeeEEEECCCC----
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRG-HEGDITDLAVSSNN-TLVASASNDFVIRVWRLPDG---- 317 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~g-Hs~~VtsLafSpDg-~lLASGS~DGtIrVWDl~tg---- 317 (1715)
-.+..++|++.-.-+|++..|-+|+||+-.. ++...++. ....|+|++|-|.+ +-|+.|+.. -|.||.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 3467788888666678888999999999776 44445543 35689999999954 567777664 5999976421
Q ss_pred Cc--------eEEE--eCCCCCeEEEEecCCCCcceEEEEec-CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 318 LP--------ISVL--RGHTGAVTAIAFSPRPSAIYQLLSSS-DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 318 ~~--------l~~L--~gH~~~VtsLafSPdg~~~~~LaSgS-~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
.. ...+ .+| ..|++|+|.+|+. .|++++ .|..|.|||..++..++....
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt---~l~tAS~gsssi~iWdpdtg~~~pL~~~---------------- 236 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT---ILVTASFGSSSIMIWDPDTGQKIPLIPK---------------- 236 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCC---EEeecccCcceEEEEcCCCCCccccccc----------------
Confidence 11 1112 344 6899999999987 677765 467899999999886654311
Q ss_pred CCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSA 466 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~ 466 (1715)
..+.+.-+.|||||.+|.+++-|+..++|+.... ........+ .+.|...+|+|+|
T Consensus 237 ---------glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~--------wt~erw~lg-sgrvqtacWspcG------ 292 (445)
T KOG2139|consen 237 ---------GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS--------WTKERWILG-SGRVQTACWSPCG------ 292 (445)
T ss_pred ---------CCCceeeEEEcCCCCEEEEecccceeeeehhccc--------ceecceecc-CCceeeeeecCCC------
Confidence 1344788999999999999999999999966432 111122222 3389999999998
Q ss_pred ccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcc-c-ccccccccccCCCCCCCCCCCCCCCcccccC-
Q 048801 467 MSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGK-V-GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLP- 543 (1715)
Q Consensus 467 ~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~- 543 (1715)
...|++++..-.+.-........... . ..+....-. .-....+..
T Consensus 293 -------------------sfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~llia-------------DL~e~ti~ag 340 (445)
T KOG2139|consen 293 -------------------SFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIA-------------DLQEVTICAG 340 (445)
T ss_pred -------------------CEEEEEEcCCceEEEEeecCCCccccCcccceeeeeec-------------cchhhhhhcC
Confidence 24555555444333222221111110 0 000000000 000001111
Q ss_pred ---CCCCeeEEEeCCCCCEEEEEecCC--------eEEEEECCCCceEEEE-ecC--CCCeEEEEEccC--CCcEEEEEe
Q 048801 544 ---TPRGVNMIVWSLDNRFVLAAIMDC--------RICVWNAVDGSLVHSL-TGH--SASSYVLDVHPF--NPRIAMSAG 607 (1715)
Q Consensus 544 ---h~~~VtslafSPDG~~LaTgs~DG--------tI~IWDl~sg~~l~tL-~gH--~~~V~sLafSP~--dg~lLaSgs 607 (1715)
-.+++.+++|.|.|.+||+.-..+ .|.+||....-.+.-. -|. ...-..|.|+|. .+.+|..+-
T Consensus 341 ~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaW 420 (445)
T KOG2139|consen 341 QRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAW 420 (445)
T ss_pred cccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEe
Confidence 145789999999999999865443 3667776554333222 111 111334556553 445666665
Q ss_pred CCCcEEEEEC
Q 048801 608 YDGRTIVWDI 617 (1715)
Q Consensus 608 ~DGtI~VWDl 617 (1715)
..|.|.-|++
T Consensus 421 sTGriq~ypl 430 (445)
T KOG2139|consen 421 STGRIQRYPL 430 (445)
T ss_pred ccCceEeeee
Confidence 6666666664
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.7e-10 Score=140.32 Aligned_cols=235 Identities=16% Similarity=0.079 Sum_probs=153.4
Q ss_pred CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC---CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCc
Q 048801 265 RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND---FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSA 341 (1715)
Q Consensus 265 GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D---GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~ 341 (1715)
..|.+||.. +...+.+..|...+.+.+|+|||+.|+.++.+ ..|.+|++.++... .+..+.+...+++|+|++..
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCE
Confidence 468999986 44455666778889999999999999988743 46999999887653 34445555668999999983
Q ss_pred ceEEEEecCCC--cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-C
Q 048801 342 IYQLLSSSDDG--TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-D 418 (1715)
Q Consensus 342 ~~~LaSgS~DG--tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-D 418 (1715)
++++.+.+| .|.+||+.+++... +. .+.......+|+|||+.|+.++. +
T Consensus 262 --l~~~~s~~g~~~Iy~~d~~~g~~~~-lt-------------------------~~~~~~~~~~~spDG~~l~f~sd~~ 313 (433)
T PRK04922 262 --LALTLSRDGNPEIYVMDLGSRQLTR-LT-------------------------NHFGIDTEPTWAPDGKSIYFTSDRG 313 (433)
T ss_pred --EEEEEeCCCCceEEEEECCCCCeEE-Cc-------------------------cCCCCccceEECCCCCEEEEEECCC
Confidence 334445555 59999988765321 10 01122456799999998887664 4
Q ss_pred Ce--EEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC-
Q 048801 419 TF--ARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD- 495 (1715)
Q Consensus 419 G~--IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D- 495 (1715)
|. |+++++.++.. ..+..+......++|+|++ +.|+..+.+
T Consensus 314 g~~~iy~~dl~~g~~----------~~lt~~g~~~~~~~~SpDG--------------------------~~Ia~~~~~~ 357 (433)
T PRK04922 314 GRPQIYRVAASGGSA----------ERLTFQGNYNARASVSPDG--------------------------KKIAMVHGSG 357 (433)
T ss_pred CCceEEEEECCCCCe----------EEeecCCCCccCEEECCCC--------------------------CEEEEEECCC
Confidence 44 66666654321 1122222344568999987 566554433
Q ss_pred C--eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC---CeEE
Q 048801 496 G--SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD---CRIC 570 (1715)
Q Consensus 496 G--sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D---GtI~ 570 (1715)
+ .|.+||+.++... .+. +......+.|+|||++|+..+.+ +.|+
T Consensus 358 ~~~~I~v~d~~~g~~~------------------------------~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~ 406 (433)
T PRK04922 358 GQYRIAVMDLSTGSVR------------------------------TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLA 406 (433)
T ss_pred CceeEEEEECCCCCeE------------------------------ECC-CCCCCCCceECCCCCEEEEEEecCCceEEE
Confidence 2 6889988764311 000 11123346899999998877653 4688
Q ss_pred EEECCCCceEEEEecCCCCeEEEEEcc
Q 048801 571 VWNAVDGSLVHSLTGHSASSYVLDVHP 597 (1715)
Q Consensus 571 IWDl~sg~~l~tL~gH~~~V~sLafSP 597 (1715)
++++ +|.....+..+.+.+..++|+|
T Consensus 407 ~~~~-~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 407 AVST-DGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEC-CCCceEEcccCCCCCCCCccCC
Confidence 8887 4556666766667778888887
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.6e-10 Score=127.87 Aligned_cols=290 Identities=14% Similarity=0.219 Sum_probs=185.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC-----ceEEEeCCC------------CCeEEEEecCCCCcceEEEE
Q 048801 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL-----PISVLRGHT------------GAVTAIAFSPRPSAIYQLLS 347 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~-----~l~~L~gH~------------~~VtsLafSPdg~~~~~LaS 347 (1715)
..-|.+|.|...|.+||+|+.+|.|.++.-.... ....++.|. ..|..+.|.++++.. .++.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a-~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA-EFLL 103 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc-EEEE
Confidence 4578999999999999999999999999643322 223344443 358899999987654 6777
Q ss_pred ecCCCcEEEEecCCCCCcce-ecCC--CCCCCccCc--------cCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec
Q 048801 348 SSDDGTCRIWDARYSQYSPR-IYLP--KPPDAITGK--------SNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS 416 (1715)
Q Consensus 348 gS~DGtVrIWDl~tg~~l~~-i~~~--~~~~~i~g~--------~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs 416 (1715)
.+.|.+|++|.+........ ...+ .++..+... ...............|...|.++.++.|+..++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 78899999998865432220 1111 011110000 00000111133445688889999999999999987
Q ss_pred CCCeEEEEeCCCCCccCCCCCceeeeee----cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEE
Q 048801 417 SDTFARVWSACKSSVEDSEQPIHELDVL----SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTC 492 (1715)
Q Consensus 417 ~DG~IrVWDl~t~~~~~~~~~~~~l~~l----~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSg 492 (1715)
.|=.|.+|++.-.. +....+..- ..-+.-|++..|+|.. -+.|+..
T Consensus 183 DdLRINLWnlei~d-----~sFnIVDIKP~nmEeLteVITsaEFhp~~-------------------------cn~f~YS 232 (433)
T KOG1354|consen 183 DDLRINLWNLEIID-----QSFNIVDIKPANMEELTEVITSAEFHPHH-------------------------CNVFVYS 232 (433)
T ss_pred cceeeeeccccccC-----CceeEEEccccCHHHHHHHHhhhccCHhH-------------------------ccEEEEe
Confidence 47889999986421 111111111 1112357777788754 3689999
Q ss_pred cCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEE
Q 048801 493 SRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 572 (1715)
Q Consensus 493 S~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IW 572 (1715)
+..|+|++-|++....... ....+ ..+.......-+...-..|..+.|+++|++|++-.. -+|+||
T Consensus 233 SSKGtIrLcDmR~~aLCd~---hsKlf----------Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~w 298 (433)
T KOG1354|consen 233 SSKGTIRLCDMRQSALCDA---HSKLF----------EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLW 298 (433)
T ss_pred cCCCcEEEeechhhhhhcc---hhhhh----------ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEE
Confidence 9999999999985332110 00011 011111112222333456889999999999997643 589999
Q ss_pred EC-CCCceEEEEecCCC------------Ce---EEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 573 NA-VDGSLVHSLTGHSA------------SS---YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 573 Dl-~sg~~l~tL~gH~~------------~V---~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
|+ ...+++.++.-|.. .| .-++|+- +...++||++...++++++..|.
T Consensus 299 D~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 299 DLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred eccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCCc
Confidence 99 56777777776632 22 3467876 56788999999999999977664
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.5e-10 Score=139.49 Aligned_cols=235 Identities=16% Similarity=0.111 Sum_probs=152.1
Q ss_pred CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC---CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCc
Q 048801 265 RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND---FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSA 341 (1715)
Q Consensus 265 GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D---GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~ 341 (1715)
..|.+||.. |.....+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++... +....+.+.+.+|+|++..
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 467777764 55555666788899999999999999887653 459999999887543 4444566778999999982
Q ss_pred ceEEEEecCCCcEEEEecC--CCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-C
Q 048801 342 IYQLLSSSDDGTCRIWDAR--YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-D 418 (1715)
Q Consensus 342 ~~~LaSgS~DGtVrIWDl~--tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-D 418 (1715)
.+++.+.+|...||.+. ++. ...+ ..+.......+|+|||+.|+..+. +
T Consensus 254 --la~~~~~~g~~~Iy~~d~~~~~-~~~l-------------------------t~~~~~~~~~~wSpDG~~l~f~s~~~ 305 (427)
T PRK02889 254 --LAVALSRDGNSQIYTVNADGSG-LRRL-------------------------TQSSGIDTEPFFSPDGRSIYFTSDRG 305 (427)
T ss_pred --EEEEEccCCCceEEEEECCCCC-cEEC-------------------------CCCCCCCcCeEEcCCCCEEEEEecCC
Confidence 33466778887777543 222 1111 011222456789999998876654 4
Q ss_pred CeEEEEeCC--CCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC
Q 048801 419 TFARVWSAC--KSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG 496 (1715)
Q Consensus 419 G~IrVWDl~--t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG 496 (1715)
|...||.+. ++. ...+..+........|+|++ +.|+..+.++
T Consensus 306 g~~~Iy~~~~~~g~----------~~~lt~~g~~~~~~~~SpDG--------------------------~~Ia~~s~~~ 349 (427)
T PRK02889 306 GAPQIYRMPASGGA----------AQRVTFTGSYNTSPRISPDG--------------------------KLLAYISRVG 349 (427)
T ss_pred CCcEEEEEECCCCc----------eEEEecCCCCcCceEECCCC--------------------------CEEEEEEccC
Confidence 666666653 221 11111122233457899987 5666655443
Q ss_pred ---eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC---eEE
Q 048801 497 ---SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC---RIC 570 (1715)
Q Consensus 497 ---sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG---tI~ 570 (1715)
.|.+||+.++... .+.. ......+.|+|||+.|+.++.++ .++
T Consensus 350 g~~~I~v~d~~~g~~~------------------------------~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~ 398 (427)
T PRK02889 350 GAFKLYVQDLATGQVT------------------------------ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLA 398 (427)
T ss_pred CcEEEEEEECCCCCeE------------------------------EccC-CCCccCceECCCCCEEEEEEecCCCEEEE
Confidence 6889998764311 0100 11234579999999998877554 366
Q ss_pred EEECCCCceEEEEecCCCCeEEEEEcc
Q 048801 571 VWNAVDGSLVHSLTGHSASSYVLDVHP 597 (1715)
Q Consensus 571 IWDl~sg~~l~tL~gH~~~V~sLafSP 597 (1715)
+.++ +|.....+..+.+.+...+|+|
T Consensus 399 ~~~~-~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 399 AVSS-DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred EEEC-CCCceEEeecCCCCCCCCccCC
Confidence 6666 5777777777778888889987
|
|
| >cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
Probab=99.25 E-value=7e-12 Score=126.19 Aligned_cols=95 Identities=22% Similarity=0.303 Sum_probs=83.3
Q ss_pred HHhhhhccccchhhhhHHHHHHh--hhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHH
Q 048801 1621 NKLEQSVSRKQDYYGIQRLNEAA--QKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALS 1698 (1715)
Q Consensus 1621 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~ 1698 (1715)
..+.......+.+..|..+++.. ..++|...+..|||++||++||++++|+++.++..|+++|++||.+||.|++.|.
T Consensus 11 ~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~ 90 (107)
T cd05497 11 KVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKPGDDVV 90 (107)
T ss_pred HHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 33333334456677788887754 5799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcC
Q 048801 1699 AKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1699 ~~~~~l~~~~~~~i~~~ 1715 (1715)
.+|+.|.+.|.+.+.+|
T Consensus 91 ~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 91 LMAQTLEKLFLQKLAQM 107 (107)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999999887
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.9e-10 Score=131.82 Aligned_cols=286 Identities=12% Similarity=0.126 Sum_probs=192.1
Q ss_pred CCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCc
Q 048801 241 GHRDAVYCAIFDRSGRFV-ITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP 319 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~L-aTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~ 319 (1715)
+|....+.|..+|||+|| |||..-..|++||+....+...-.--...|.-.-++.|-..++.-..|.+|-+..- -|..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh-cCee
Confidence 588888999999999986 56667889999999865443222212334555556667667777778888877653 2221
Q ss_pred eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcc
Q 048801 320 ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399 (1715)
Q Consensus 320 l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~ 399 (1715)
. .++ -...-..++++.-.. -|++++....|+-+++..|.++..+.. ....
T Consensus 128 y-~~R-IP~~GRDm~y~~~sc---Dly~~gsg~evYRlNLEqGrfL~P~~~-------------------------~~~~ 177 (703)
T KOG2321|consen 128 Y-RTR-IPKFGRDMKYHKPSC---DLYLVGSGSEVYRLNLEQGRFLNPFET-------------------------DSGE 177 (703)
T ss_pred e-eee-cCcCCccccccCCCc---cEEEeecCcceEEEEcccccccccccc-------------------------cccc
Confidence 1 111 112234556654443 245555556688889998887665433 1355
Q ss_pred eeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC-----CeeEEEEccCccccccccccccccc
Q 048801 400 ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN-----DVNYVQFSGCAVASRSAMSDAFKEE 474 (1715)
Q Consensus 400 VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~-----~V~sLafspdg~as~~~~~~~~~~~ 474 (1715)
+++|..++-..+|++|+.+|.|..||.++........ .......|.+ .|+++.|+.+|
T Consensus 178 lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~---~~~~v~s~pg~~~~~svTal~F~d~g-------------- 240 (703)
T KOG2321|consen 178 LNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLD---AASSVNSHPGGDAAPSVTALKFRDDG-------------- 240 (703)
T ss_pred ceeeeecCccceEEecccCceEEEecchhhhhheeee---cccccCCCccccccCcceEEEecCCc--------------
Confidence 8999999999999999999999999998754322111 1111222333 49999999876
Q ss_pred ccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC
Q 048801 475 NVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS 554 (1715)
Q Consensus 475 ~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS 554 (1715)
=.+++|+.+|.+.|||+++.+.+. ..-.....+|..+.|.
T Consensus 241 ------------L~~aVGts~G~v~iyDLRa~~pl~----------------------------~kdh~~e~pi~~l~~~ 280 (703)
T KOG2321|consen 241 ------------LHVAVGTSTGSVLIYDLRASKPLL----------------------------VKDHGYELPIKKLDWQ 280 (703)
T ss_pred ------------eeEEeeccCCcEEEEEcccCCcee----------------------------ecccCCccceeeeccc
Confidence 489999999999999999754211 1112234467888887
Q ss_pred CC--CCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 555 LD--NRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 555 PD--G~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
+. +..|++. ....++|||-.+|+....+..... ++.+++-| +.-++++|-.++.+..|=+
T Consensus 281 ~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~-lND~C~~p-~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 281 DTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSD-LNDFCFVP-GSGMFFTANESSKMHTYYI 342 (703)
T ss_pred ccCCCceEEec-chHHhhhcccccCCceeeccccCC-cCceeeec-CCceEEEecCCCcceeEEc
Confidence 65 3344433 456799999999999888875444 89999999 6667777877776666554
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.9e-10 Score=138.78 Aligned_cols=240 Identities=15% Similarity=0.123 Sum_probs=148.9
Q ss_pred CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecC---CCcEEEEecCCCCCcceecCCCCCCCccCccCC
Q 048801 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD---DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~---DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~ 383 (1715)
..|.+||. +|.....+..+...+.+.+|+|+++ .|+..+. ...|.+||+.+++.......
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~---~la~~s~~~~~~~I~~~dl~~g~~~~l~~~------------- 238 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGT---KLAYVSFESKKPVVYVHDLATGRRRVVANF------------- 238 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCC---EEEEEEccCCCcEEEEEECCCCCEEEeecC-------------
Confidence 35777776 4555666667888999999999997 5555443 34599999987753221100
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccCCCeEE-EecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccc
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNANGTVFV-TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVA 462 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpdG~~La-tGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~a 462 (1715)
...+.+.+|+|||+.|+ +.+.+|...||.+.... .....+..+...+....|+|++
T Consensus 239 -------------~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~--------~~~~~lt~~~~~~~~~~wSpDG-- 295 (427)
T PRK02889 239 -------------KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADG--------SGLRRLTQSSGIDTEPFFSPDG-- 295 (427)
T ss_pred -------------CCCccceEECCCCCEEEEEEccCCCceEEEEECCC--------CCcEECCCCCCCCcCeEEcCCC--
Confidence 12245789999998876 45677776676653210 1123344455556678899987
Q ss_pred ccccccccccccccccccCCcccCceEE-EEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc
Q 048801 463 SRSAMSDAFKEENVPKFKNSWFCHDNIV-TCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL 541 (1715)
Q Consensus 463 s~~~~~~~~~~~~~~~~~~s~~~~~~La-SgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l 541 (1715)
+.|+ ++..+|...||.+.... .....+
T Consensus 296 ------------------------~~l~f~s~~~g~~~Iy~~~~~~----------------------------g~~~~l 323 (427)
T PRK02889 296 ------------------------RSIYFTSDRGGAPQIYRMPASG----------------------------GAAQRV 323 (427)
T ss_pred ------------------------CEEEEEecCCCCcEEEEEECCC----------------------------CceEEE
Confidence 4555 44445677777654210 000011
Q ss_pred cCCCCCeeEEEeCCCCCEEEEEecCC---eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCc--EEEEE
Q 048801 542 LPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGR--TIVWD 616 (1715)
Q Consensus 542 ~~h~~~VtslafSPDG~~LaTgs~DG---tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGt--I~VWD 616 (1715)
..........+|||||++|+..+.++ .|.+||+.+++... +..+ .....+.|+|++..++++....|. +.+.+
T Consensus 324 t~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~ 401 (427)
T PRK02889 324 TFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVS 401 (427)
T ss_pred ecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEE
Confidence 11112233578999999998877654 69999998887543 3322 234678999955555555544444 45556
Q ss_pred CCCCceEEEEEcccceEEEEEEcCC
Q 048801 617 IWEGTPIRIYEIGRFKLVDGKFSPD 641 (1715)
Q Consensus 617 l~tgk~l~tl~~h~~~V~svafSPD 641 (1715)
+ +|.....+..+.+.+...+|+|-
T Consensus 402 ~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 402 S-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred C-CCCceEEeecCCCCCCCCccCCC
Confidence 5 56666666656667777888874
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-10 Score=129.91 Aligned_cols=335 Identities=17% Similarity=0.190 Sum_probs=228.3
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe-CCCCcEEEEec-CCCCCeEEEEECCCCCEEEEEeCCCeeE
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWS-METAFCLASCR-GHEGDITDLAVSSNNTLVASASNDFVIR 310 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWD-l~tgk~l~tL~-gHs~~VtsLafSpDg~lLASGS~DGtIr 310 (1715)
...+..++||.+.|+....-|-..-+++.+.|.+++||- .+.++.-..+. ....+++++.+.++...|++|-..|++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 345677899999999999999888899999999999995 34444433332 2456889999999999999999999999
Q ss_pred EEECC----CCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 311 VWRLP----DGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 311 VWDl~----tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
-+.+. ....++....|...|..+.|+-... .+++.+.|..+.-.-.+.+..+....+....
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e---~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~------------ 158 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE---WVLSTGKDKQFAWHCTESGNRLGGYNFETPA------------ 158 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCce---eEEEeccccceEEEeeccCCcccceEeeccC------------
Confidence 88664 3345566678999999999998766 7899999887765444444432222111110
Q ss_pred CCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSA 466 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~ 466 (1715)
+++.|.-. +..+|...|.|.+-.+... ....+..+.+|.+.+.++.|.+..
T Consensus 159 --------------t~~~~d~~--~~fvGd~~gqvt~lr~~~~-------~~~~i~~~~~h~~~~~~l~Wd~~~------ 209 (404)
T KOG1409|consen 159 --------------SALQFDAL--YAFVGDHSGQITMLKLEQN-------GCQLITTFNGHTGEVTCLKWDPGQ------ 209 (404)
T ss_pred --------------CCCceeeE--EEEecccccceEEEEEeec-------CCceEEEEcCcccceEEEEEcCCC------
Confidence 01111111 4445555666665555322 245678899999999999999864
Q ss_pred ccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC
Q 048801 467 MSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR 546 (1715)
Q Consensus 467 ~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~ 546 (1715)
..|.+|..|..+.+||+-..+ +....+.+|..
T Consensus 210 --------------------~~LfSg~~d~~vi~wdigg~~----------------------------g~~~el~gh~~ 241 (404)
T KOG1409|consen 210 --------------------RLLFSGASDHSVIMWDIGGRK----------------------------GTAYELQGHND 241 (404)
T ss_pred --------------------cEEEeccccCceEEEeccCCc----------------------------ceeeeeccchh
Confidence 799999999999999987432 23345677888
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEE-----------------------------EEecC----CCCeEEE
Q 048801 547 GVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVH-----------------------------SLTGH----SASSYVL 593 (1715)
Q Consensus 547 ~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~-----------------------------tL~gH----~~~V~sL 593 (1715)
.|..+..-+--+.+++++.||.|.+|++....... -++-| -+...+.
T Consensus 242 kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~ 321 (404)
T KOG1409|consen 242 KVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCG 321 (404)
T ss_pred hhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCc
Confidence 88888888888899999999999999986532110 00011 1111111
Q ss_pred EEccCCCcEEEEEeCCCcEEEE--------ECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 594 DVHPFNPRIAMSAGYDGRTIVW--------DIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 594 afSP~dg~lLaSgs~DGtI~VW--------Dl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
..+. ......+-+..-.+++- |. +..+++++...+..|+.+.+..+-.+|++++.|..|+|||+..
T Consensus 322 ~c~s-~~~~~p~mg~e~~vR~~~~c~~~i~~~-~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 322 KCSS-NRSSYPTMGFEFSVRVCDSCYPTIKDE-ERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cccc-CccccccccceeEEEEecccchhhhcC-CCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 1111 11111222222234443 33 3355777766667899999999999999999999999999853
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.7e-09 Score=122.60 Aligned_cols=322 Identities=15% Similarity=0.155 Sum_probs=206.0
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCC-----------
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDF----------- 307 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DG----------- 307 (1715)
+..-.-++..+.|||-|.+|++.... -|.+|....+..+..+. ...|..+.|||.++||.+-+..+
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred ccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCc
Confidence 34456678899999999999988654 59999987766555555 35699999999999999875433
Q ss_pred ----eeEEEECCCCCceEEEeCCCCC--eE-EEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCc
Q 048801 308 ----VIRVWRLPDGLPISVLRGHTGA--VT-AIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGK 380 (1715)
Q Consensus 308 ----tIrVWDl~tg~~l~~L~gH~~~--Vt-sLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~ 380 (1715)
.+.|||+.+|..+..+.+-..+ .+ -+.|+-+.....++ ....+.|+++ ++..... +.
T Consensus 105 ~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv----v~~sl~i~e~-t~n~~~~-----p~------ 168 (561)
T COG5354 105 TSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV----VGSSLYIHEI-TDNIEEH-----PF------ 168 (561)
T ss_pred cccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh----ccCeEEEEec-CCccccC-----ch------
Confidence 4999999999999988766655 45 67888887632222 2345899987 4332110 00
Q ss_pred cCCCCCCCCCCCCCCCCcceeEEEEccCCC--eEEE-----ecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeE
Q 048801 381 SNVPSNNGPSSSNGLQSHQILCCAYNANGT--VFVT-----GSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNY 453 (1715)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~VtslafSpdG~--~Lat-----Gs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~s 453 (1715)
.......|...+|+|.|+ .||. +...+.++||.+...+. ... ..+. ...-..
T Consensus 169 ------------~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~------l~t-k~lf--k~~~~q 227 (561)
T COG5354 169 ------------KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV------LVT-KNLF--KVSGVQ 227 (561)
T ss_pred ------------hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe------eee-eeeE--eecccE
Confidence 011134578888888643 3442 45678889998864332 111 1111 111224
Q ss_pred EEEccCcccccccccccccccccccccCCcccCceEEEE-----------cCCCeEEEEecCCCccCccccccccccccc
Q 048801 454 VQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTC-----------SRDGSAIIWIPRSRRSHGKVGRWTRAYHLK 522 (1715)
Q Consensus 454 Lafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSg-----------S~DGsIrIWDl~t~~~~~~~~~~~~~~~l~ 522 (1715)
+.|.+.| ++|+.- -....+.|+++...
T Consensus 228 LkW~~~g--------------------------~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~---------------- 265 (561)
T COG5354 228 LKWQVLG--------------------------KYLLVLVMTHTKSNKSYFGESNLYLLRITER---------------- 265 (561)
T ss_pred EEEecCC--------------------------ceEEEEEEEeeecccceeccceEEEEeeccc----------------
Confidence 5555544 111110 01123445544321
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEE--ecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCC
Q 048801 523 VPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAA--IMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP 600 (1715)
Q Consensus 523 ~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTg--s~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg 600 (1715)
.+.......++|..++|.|.++.+++. -.+..+.++|++.. +...+ ....-+.+.|+| ..
T Consensus 266 --------------~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp-~~ 327 (561)
T COG5354 266 --------------SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSP-HE 327 (561)
T ss_pred --------------ccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccC-cc
Confidence 111112446789999999998877654 47888999998665 33333 344446788999 66
Q ss_pred cEEEEEeCC---CcEEEEECCCCceEE-EEEcccceEEEEEEcCCCCEEEEEe------CCCeEEEEECCCC
Q 048801 601 RIAMSAGYD---GRTIVWDIWEGTPIR-IYEIGRFKLVDGKFSPDGTSIVLSD------DVGQIYLLNTGQG 662 (1715)
Q Consensus 601 ~lLaSgs~D---GtI~VWDl~tgk~l~-tl~~h~~~V~svafSPDG~~LAsgs------~DG~I~IWdl~tG 662 (1715)
++++.+|-| |.|-+||......+. .+.+. ...-+.|||||+++.+.. .|..|.||++...
T Consensus 328 r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 328 RYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred cEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 777776655 689999987654444 56533 345678999999988763 3788999998543
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.9e-10 Score=125.10 Aligned_cols=322 Identities=13% Similarity=0.112 Sum_probs=197.8
Q ss_pred EEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceec
Q 048801 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIY 369 (1715)
Q Consensus 290 sLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~ 369 (1715)
-++|||+|++||+++.- .+.|-|..+-+..+.+.. -..|.-|.|..+.- +.|.....++.|.+|++...+....+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~--~ilC~~yk~~~vqvwsl~Qpew~ckId 88 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSC--HILCVAYKDPKVQVWSLVQPEWYCKID 88 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccce--eeeeeeeccceEEEEEeecceeEEEec
Confidence 35799999999999876 788888877665544432 35677888988765 256677889999999998665444332
Q ss_pred CCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeE-EEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCC
Q 048801 370 LPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVF-VTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE 448 (1715)
Q Consensus 370 ~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~L-atGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~ 448 (1715)
. ....+..++|||+|+.| .+..-+-.|.||.+.+.+. ..+....
T Consensus 89 e-------------------------g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~----------~~~~~pK 133 (447)
T KOG4497|consen 89 E-------------------------GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG----------YLLPHPK 133 (447)
T ss_pred c-------------------------CCCcceeeeECCCcceEeeeecceeEEEEEEecccee----------EEecccc
Confidence 1 23457899999999655 5556688999999987542 2233334
Q ss_pred CCeeEEEEccCcccccccccccccccccccc-cCCc----------ccCceEEEEcCCCeEEEEecCCCccCcccccccc
Q 048801 449 NDVNYVQFSGCAVASRSAMSDAFKEENVPKF-KNSW----------FCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTR 517 (1715)
Q Consensus 449 ~~V~sLafspdg~as~~~~~~~~~~~~~~~~-~~s~----------~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~ 517 (1715)
..+..++|+++|......... ...+....+ ...| .+-.-|--.-.+..+.+||.--
T Consensus 134 ~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L------------ 200 (447)
T KOG4497|consen 134 TNVKGYAFHPDGQFCAILSRR-DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL------------ 200 (447)
T ss_pred cCceeEEECCCCceeeeeecc-cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh------------
Confidence 466888999987321110000 000000000 0000 0001111112233455564321
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce------------------
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL------------------ 579 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~------------------ 579 (1715)
... .-...-.-++..++|+|.+++|++|+.|+.++|.+--+.+.
T Consensus 201 --eyk----------------v~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~ 262 (447)
T KOG4497|consen 201 --EYK----------------VYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLL 262 (447)
T ss_pred --hhe----------------eeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhh
Confidence 000 00111234688899999999999999999988865433110
Q ss_pred ------------------------------------------EEEEec------CCCCeEEEEEccCCCcEEEEEeC--C
Q 048801 580 ------------------------------------------VHSLTG------HSASSYVLDVHPFNPRIAMSAGY--D 609 (1715)
Q Consensus 580 ------------------------------------------l~tL~g------H~~~V~sLafSP~dg~lLaSgs~--D 609 (1715)
++.++. ....+.-++|++ |..+++|-.. -
T Consensus 263 ~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~P 341 (447)
T KOG4497|consen 263 EKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYP 341 (447)
T ss_pred hhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCC
Confidence 111110 112355688999 7788877543 3
Q ss_pred CcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccc-----cccceeecCCCccEEE
Q 048801 610 GRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKD-----AKYDQFFLGDYRPLIR 683 (1715)
Q Consensus 610 GtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~-----~~~~~~fs~D~r~L~~ 683 (1715)
+.+.|||+..-+....+. ...+|....|.|....|+.+....++++|...-.....- .....-|+-+|.-++.
T Consensus 342 nalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l 419 (447)
T KOG4497|consen 342 NALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVL 419 (447)
T ss_pred ceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEE
Confidence 679999998877666665 456899999999999999998888999998754332211 1123345556655544
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.3e-10 Score=130.47 Aligned_cols=273 Identities=13% Similarity=0.136 Sum_probs=181.5
Q ss_pred CCCeEEEEECCCC--CEEEEEeCCCeeEEEECCCCCceEE------EeCCCCCeEEEEecCCCCcceEEEEecCCCcEEE
Q 048801 285 EGDITDLAVSSNN--TLVASASNDFVIRVWRLPDGLPISV------LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356 (1715)
Q Consensus 285 s~~VtsLafSpDg--~lLASGS~DGtIrVWDl~tg~~l~~------L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrI 356 (1715)
...|+.++|.-++ ..|...+.+..+....+........ .....+.|..++.... .|++|-.+|.+.+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg-----~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADG-----TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCC-----EEEEEecCCcEEE
Confidence 4467777776554 3444444666677666665544433 3345567777776543 6899999999999
Q ss_pred EecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCC--CeEEEEeCCCCCccC
Q 048801 357 WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSD--TFARVWSACKSSVED 433 (1715)
Q Consensus 357 WDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~D--G~IrVWDl~t~~~~~ 433 (1715)
|....+....... .......++..+.-++.. .++++|+.. ..+.|||+...+...
T Consensus 130 ~~~k~~d~hss~l----------------------~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw 187 (412)
T KOG3881|consen 130 RHDKSGDLHSSKL----------------------IKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIW 187 (412)
T ss_pred EeccCCccccccc----------------------eeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeee
Confidence 9987554211000 000112334555555544 456668888 889999997643211
Q ss_pred CCCCceeeeeec-CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccc
Q 048801 434 SEQPIHELDVLS-GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKV 512 (1715)
Q Consensus 434 ~~~~~~~l~~l~-gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~ 512 (1715)
....... ..+. .-.-.++.+.|.+.. .+..|++++.-+.+++||++.++
T Consensus 188 ~aKNvpn-D~L~LrVPvW~tdi~Fl~g~------------------------~~~~fat~T~~hqvR~YDt~~qR----- 237 (412)
T KOG3881|consen 188 SAKNVPN-DRLGLRVPVWITDIRFLEGS------------------------PNYKFATITRYHQVRLYDTRHQR----- 237 (412)
T ss_pred eccCCCC-ccccceeeeeeccceecCCC------------------------CCceEEEEecceeEEEecCcccC-----
Confidence 1110000 0000 001134556665532 14689999999999999998644
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEE-EecCCCCeE
Q 048801 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHS-LTGHSASSY 591 (1715)
Q Consensus 513 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~t-L~gH~~~V~ 591 (1715)
.++..+.-...+|+++...|+|++|++|..-|.+..||++.++++.. +.+-.+.|+
T Consensus 238 -----------------------RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsir 294 (412)
T KOG3881|consen 238 -----------------------RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIR 294 (412)
T ss_pred -----------------------cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcc
Confidence 23444445577899999999999999999999999999999999887 889999999
Q ss_pred EEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEc
Q 048801 592 VLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFS 639 (1715)
Q Consensus 592 sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafS 639 (1715)
+|..+| ...+++++|-|..|+|+|+.+.+++.... -...++.+.+.
T Consensus 295 sih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~ 340 (412)
T KOG3881|consen 295 SIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLR 340 (412)
T ss_pred eEEEcC-CCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEec
Confidence 999999 77899999999999999999876665443 12334444443
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-09 Score=124.12 Aligned_cols=238 Identities=16% Similarity=0.226 Sum_probs=155.0
Q ss_pred CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEc
Q 048801 327 TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYN 406 (1715)
Q Consensus 327 ~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafS 406 (1715)
...+..++|++.-. .++++..|-+|++|+-.. .....+. ......|+|++|-
T Consensus 98 ~~dlr~~aWhqH~~---~fava~nddvVriy~kss-t~pt~Lk------------------------s~sQrnvtclawR 149 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII---AFAVATNDDVVRIYDKSS-TCPTKLK------------------------SVSQRNVTCLAWR 149 (445)
T ss_pred hcceeeEeechhhh---hhhhhccCcEEEEeccCC-CCCceec------------------------chhhcceeEEEec
Confidence 34577889998543 789999999999998765 2222211 1224569999999
Q ss_pred cCC-CeEEEecCCCeEEEEeCCCCCc-cCC--CCCce--eeeeecCCCCCeeEEEEccCccccccccccccccccccccc
Q 048801 407 ANG-TVFVTGSSDTFARVWSACKSSV-EDS--EQPIH--ELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFK 480 (1715)
Q Consensus 407 pdG-~~LatGs~DG~IrVWDl~t~~~-~~~--~~~~~--~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~ 480 (1715)
|.+ ..|++|+. +.|.||....... ... ..... .+....+| .+|++++|.++|
T Consensus 150 PlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg-------------------- 207 (445)
T KOG2139|consen 150 PLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG-------------------- 207 (445)
T ss_pred cCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCC--------------------
Confidence 965 57788876 5588998754211 000 00111 12233455 689999999987
Q ss_pred CCcccCceEEEEc-CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCE
Q 048801 481 NSWFCHDNIVTCS-RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRF 559 (1715)
Q Consensus 481 ~s~~~~~~LaSgS-~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~ 559 (1715)
..+++++ .|..|.|||++++..... .....++++.+.|||||.+
T Consensus 208 ------t~l~tAS~gsssi~iWdpdtg~~~pL-----------------------------~~~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 208 ------TILVTASFGSSSIMIWDPDTGQKIPL-----------------------------IPKGLGGFSLLKWSPDGDV 252 (445)
T ss_pred ------CEEeecccCcceEEEEcCCCCCcccc-----------------------------cccCCCceeeEEEcCCCCE
Confidence 5777776 467899999997652211 1234567899999999999
Q ss_pred EEEEecCCeEEEEECC-CCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC--Cc-----------eEEE
Q 048801 560 VLAAIMDCRICVWNAV-DGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE--GT-----------PIRI 625 (1715)
Q Consensus 560 LaTgs~DGtI~IWDl~-sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t--gk-----------~l~t 625 (1715)
|+++.-|+..++|+.. +....+-.. ..+.|....|+|.+..+|++++..-.|+--.... +. ++..
T Consensus 253 lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaD 331 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD 331 (445)
T ss_pred EEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeecc
Confidence 9999999999999543 333333333 3448999999997777777766444433222211 00 1111
Q ss_pred EE-----cc----cceEEEEEEcCCCCEEEEEeC
Q 048801 626 YE-----IG----RFKLVDGKFSPDGTSIVLSDD 650 (1715)
Q Consensus 626 l~-----~h----~~~V~svafSPDG~~LAsgs~ 650 (1715)
+. .+ -+++.+++|.|.|.+||+.-.
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred chhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 11 11 356789999999999998754
|
|
| >cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-11 Score=121.37 Aligned_cols=100 Identities=14% Similarity=0.123 Sum_probs=89.5
Q ss_pred HHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhcc
Q 048801 1612 SRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYF 1691 (1715)
Q Consensus 1612 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n 1691 (1715)
-|++|+..+.++.. .+....|..+++....++|...+..|||++||++||+++.|++++++..|+++|++||.+||
T Consensus 4 ~~~~~~~il~~l~~----~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 79 (104)
T cd05507 4 WKKAILLVYRTLAS----HRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYN 79 (104)
T ss_pred HHHHHHHHHHHHHc----CCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 36778888888755 35566677777777789999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1692 IKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1692 ~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
.+++.+..+|+.|.+.+.+.|.++
T Consensus 80 ~~~s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 80 SSDHDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999998764
|
In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.5e-09 Score=119.54 Aligned_cols=117 Identities=14% Similarity=0.235 Sum_probs=95.7
Q ss_pred CCeeEEEeCCCCCEEEE-EecCCeEEEEECCCCce--EEEEecCCCCeEEEEEccCCCcEEEEEeCCCc-EEEEECCCCc
Q 048801 546 RGVNMIVWSLDNRFVLA-AIMDCRICVWNAVDGSL--VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGR-TIVWDIWEGT 621 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaT-gs~DGtI~IWDl~sg~~--l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGt-I~VWDl~tgk 621 (1715)
.++.+++-..+..+||. |-.-|.|.|-|+...+. ...+.+|...|.|++.+- +|.++||++..|+ |+|||..+|+
T Consensus 137 kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~ 215 (346)
T KOG2111|consen 137 KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGT 215 (346)
T ss_pred CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCc
Confidence 34444443444455555 44568999999977655 478899999999999998 8899999999997 6999999999
Q ss_pred eEEEEEcc--cceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 622 PIRIYEIG--RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 622 ~l~tl~~h--~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
.+..+.-+ +..|.+++||||+.+||++++.|+|+||.+....
T Consensus 216 ~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 216 LLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 99999854 4569999999999999999999999999986543
|
|
| >cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.5e-11 Score=120.41 Aligned_cols=86 Identities=19% Similarity=0.340 Sum_probs=79.4
Q ss_pred cchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFN 1709 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~ 1709 (1715)
......|..+++....++|...+..||++.||++||+++.|++++++..|+++|++||.+||.+++.+..+|+.|.+.|.
T Consensus 16 ~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~a~~l~~~f~ 95 (101)
T cd05509 16 HKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTEYYKCANKLEKFFW 95 (101)
T ss_pred CCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 35556677777777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q 048801 1710 RTLNKL 1715 (1715)
Q Consensus 1710 ~~i~~~ 1715 (1715)
+++++|
T Consensus 96 ~~~~~~ 101 (101)
T cd05509 96 KKLKEL 101 (101)
T ss_pred HHHhhC
Confidence 999875
|
Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.1e-09 Score=127.33 Aligned_cols=390 Identities=13% Similarity=0.137 Sum_probs=249.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---------------cEEEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA---------------FCLASCRGHEGDITDLAVSSNNTLVASASNDF 307 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg---------------k~l~tL~gHs~~VtsLafSpDg~lLASGS~DG 307 (1715)
.....|++|.....|||.||.||.++|-.+.+. ..-++|.||.+.|.-+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 345789999999999999999999999987643 12356889999999999999999999999999
Q ss_pred eeEEEECCCCCceEEE--eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 308 VIRVWRLPDGLPISVL--RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L--~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
.|.||-+-.|.-.... ....+.|.+++|..+|. .++....||.|.+=.+...+.- |.
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~---kIcIvYeDGavIVGsvdGNRIw-------------gK----- 152 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT---KICIVYEDGAVIVGSVDGNRIW-------------GK----- 152 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc---EEEEEEccCCEEEEeeccceec-------------ch-----
Confidence 9999998777543222 12456789999999998 7788888888887666543310 00
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCcee-e---eeecCCCCCeeEEEEccCcc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHE-L---DVLSGHENDVNYVQFSGCAV 461 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~-l---~~l~gH~~~V~sLafspdg~ 461 (1715)
.........+.|++|...++.+-.+|.+.+||....-. .... ..+ + ..+......|..+.|....
T Consensus 153 --------eLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~-~Kl~-~~c~Vn~tg~~s~~~~kia~i~w~~g~- 221 (1189)
T KOG2041|consen 153 --------ELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFE-RKLE-KDCEVNGTGIFSNFPTKIAEIEWNTGP- 221 (1189)
T ss_pred --------hcchheccceeecccHHHHHhhhcCCcEEEecccccHH-Hhhh-hceEEeeeeeecCCCccccceeeccCc-
Confidence 01122345788999999988888999999999854211 0000 000 0 0111111234444444321
Q ss_pred cccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL 541 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l 541 (1715)
......+...|+.+-..|.+.|..-.+.. ...+
T Consensus 222 -----------------~~~v~pdrP~lavcy~nGr~QiMR~eND~------------------------------~Pvv 254 (1189)
T KOG2041|consen 222 -----------------YQPVPPDRPRLAVCYANGRMQIMRSENDP------------------------------EPVV 254 (1189)
T ss_pred -----------------cccCCCCCCEEEEEEcCceehhhhhcCCC------------------------------CCeE
Confidence 00111123689999999998886332210 1112
Q ss_pred cCCCCCeeEEEeCCCCCEEEEEecCC---------eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 048801 542 LPTPRGVNMIVWSLDNRFVLAAIMDC---------RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRT 612 (1715)
Q Consensus 542 ~~h~~~VtslafSPDG~~LaTgs~DG---------tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI 612 (1715)
....-.|..+.|+++|..|++++.+. .|.+|. .-|..+.+++.....|++++|-. .+-.++. ..|+.|
T Consensus 255 ~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg-~gLriA~-Avdsfi 331 (1189)
T KOG2041|consen 255 VDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEG-TGLRIAI-AVDSFI 331 (1189)
T ss_pred EecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcC-CceEEEE-EecceE
Confidence 22335678899999999999988653 455555 45888889998889999999965 4433333 458888
Q ss_pred EEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccc---cceeecCCCccEEEcCCCCe
Q 048801 613 IVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAK---YDQFFLGDYRPLIRDSLGNV 689 (1715)
Q Consensus 613 ~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~~---~~~~fs~D~r~L~~d~~g~v 689 (1715)
.+=+++..-.-..+ ...|.-+---++. ..-.|.+||+.+.+..-... ....|..+.-.|+...+.++
T Consensus 332 yfanIRP~ykWgy~---e~TvVy~y~~~e~-------p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~ 401 (1189)
T KOG2041|consen 332 YFANIRPEYKWGYI---EETVVYVYQKEEL-------PQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGV 401 (1189)
T ss_pred EEEeecccceEEEe---eeEEEEEEccCCC-------cceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCC
Confidence 88776432111111 0111110000110 12368899998876542222 22356677777777666666
Q ss_pred eecccccccCcCCCCCcccCCCCCCCCCccchhhh
Q 048801 690 LDQETQLVPHRRNIQDPLCDSSMIPYEEPYQSMYQ 724 (1715)
Q Consensus 690 ld~~tq~~p~~~~~~~~lvD~~~~p~p~~~q~~~q 724 (1715)
+.+...+-...+.+.-.||.+-|.+....|....|
T Consensus 402 i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP 436 (1189)
T KOG2041|consen 402 IPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRP 436 (1189)
T ss_pred CcchhhhhcccceEEEeeecccCCcCCCCcceeee
Confidence 66555555555555667888888887777766543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.7e-09 Score=132.16 Aligned_cols=235 Identities=14% Similarity=0.049 Sum_probs=148.4
Q ss_pred CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec---CCCcEEEEecCCCCCcceecCCCCCCCccCccCC
Q 048801 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS---DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS---~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~ 383 (1715)
..|.+||.. |.....+..|...+.+.+|+|++. .|+..+ .+..|.+||+.+++... +.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~---~lay~s~~~g~~~i~~~dl~~g~~~~-l~-------------- 242 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQ---EITYMSYANGRPRVYLLDLETGQREL-VG-------------- 242 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCC---EEEEEEecCCCCEEEEEECCCCcEEE-ee--------------
Confidence 378889974 555667777888999999999998 455443 35789999998775321 10
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccCCCeEE-EecCCCe--EEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCc
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNANGTVFV-TGSSDTF--ARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpdG~~La-tGs~DG~--IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg 460 (1715)
.....+.+.+|+|||+.|+ +.+.++. |++||+.++. ...+..+........|+|++
T Consensus 243 -----------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~----------~~~Lt~~~~~~~~~~~spDG 301 (435)
T PRK05137 243 -----------NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT----------TTRLTDSPAIDTSPSYSPDG 301 (435)
T ss_pred -----------cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc----------eEEccCCCCccCceeEcCCC
Confidence 0122356789999998775 4444554 7777886543 23345555566778999987
Q ss_pred ccccccccccccccccccccCCcccCceEEEEc-CCC--eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RDG--SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~DG--sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 537 (1715)
..|+..+ .+| .|.+||+.++.
T Consensus 302 --------------------------~~i~f~s~~~g~~~Iy~~d~~g~~------------------------------ 325 (435)
T PRK05137 302 --------------------------SQIVFESDRSGSPQLYVMNADGSN------------------------------ 325 (435)
T ss_pred --------------------------CEEEEEECCCCCCeEEEEECCCCC------------------------------
Confidence 4555444 444 56666765422
Q ss_pred cccccCCCCCeeEEEeCCCCCEEEEEecC---CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCC-----
Q 048801 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYD----- 609 (1715)
Q Consensus 538 ~~~l~~h~~~VtslafSPDG~~LaTgs~D---GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~D----- 609 (1715)
...+......+....|+|||++|+....+ ..|.+|++..+. ...+.. ...+..+.|+|++..+++++...
T Consensus 326 ~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~ 403 (435)
T PRK05137 326 PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGA 403 (435)
T ss_pred eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCc
Confidence 11122223345668899999999887653 368899986554 333432 23467889999554444444333
Q ss_pred CcEEEEECCCCceEEEEEcccceEEEEEEcCC
Q 048801 610 GRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPD 641 (1715)
Q Consensus 610 GtI~VWDl~tgk~l~tl~~h~~~V~svafSPD 641 (1715)
..|.++|+..+.. ..+. ..+.+...+|+|-
T Consensus 404 ~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 404 PKLYTVDLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred ceEEEEECCCCce-EEcc-CCCCccCcccCCC
Confidence 2577888765544 4444 2344666777763
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-08 Score=124.94 Aligned_cols=310 Identities=12% Similarity=0.044 Sum_probs=188.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEE
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIA 334 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLa 334 (1715)
+..|++++.+|.|..+|..+|+.+-...-.......++. ++..++.++.+|.|..+|..+|+.+...... +.+.+..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCC
Confidence 568888889999999999999988776544332223333 4678888889999999999999988766532 2222211
Q ss_pred ecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEE
Q 048801 335 FSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVT 414 (1715)
Q Consensus 335 fSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~Lat 414 (1715)
...+ . .++.++.+|.|..||..+|+.+.......+.... ... .+..+. + ..+++
T Consensus 142 ~v~~-~---~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~----------------~~~----~sp~~~-~-~~v~~ 195 (377)
T TIGR03300 142 LVAN-G---LVVVRTNDGRLTALDAATGERLWTYSRVTPALTL----------------RGS----ASPVIA-D-GGVLV 195 (377)
T ss_pred EEEC-C---EEEEECCCCeEEEEEcCCCceeeEEccCCCceee----------------cCC----CCCEEE-C-CEEEE
Confidence 1112 2 5777788999999999999876654332111000 000 011111 2 36677
Q ss_pred ecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC
Q 048801 415 GSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR 494 (1715)
Q Consensus 415 Gs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~ 494 (1715)
+..+|.+..+|..+++...... .....+.. .+..+... ........+.++.++.
T Consensus 196 ~~~~g~v~ald~~tG~~~W~~~----~~~~~g~~-~~~~~~~~---------------------~~~p~~~~~~vy~~~~ 249 (377)
T TIGR03300 196 GFAGGKLVALDLQTGQPLWEQR----VALPKGRT-ELERLVDV---------------------DGDPVVDGGQVYAVSY 249 (377)
T ss_pred ECCCCEEEEEEccCCCEeeeec----cccCCCCC-chhhhhcc---------------------CCccEEECCEEEEEEc
Confidence 7788999999988764311100 00000000 00000000 0000112357888889
Q ss_pred CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEEC
Q 048801 495 DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 574 (1715)
Q Consensus 495 DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl 574 (1715)
+|.+..||..+++.. |.... ......+ .++..|++++.+|.|+.+|.
T Consensus 250 ~g~l~a~d~~tG~~~-----W~~~~--------------------------~~~~~p~--~~~~~vyv~~~~G~l~~~d~ 296 (377)
T TIGR03300 250 QGRVAALDLRSGRVL-----WKRDA--------------------------SSYQGPA--VDDNRLYVTDADGVVVALDR 296 (377)
T ss_pred CCEEEEEECCCCcEE-----Eeecc--------------------------CCccCce--EeCCEEEEECCCCeEEEEEC
Confidence 999999999876532 21110 0011111 24667888889999999999
Q ss_pred CCCceEEEEecCCC-CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEE-EEEcCCCCEEEEEeCCC
Q 048801 575 VDGSLVHSLTGHSA-SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVD-GKFSPDGTSIVLSDDVG 652 (1715)
Q Consensus 575 ~sg~~l~tL~gH~~-~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~s-vafSPDG~~LAsgs~DG 652 (1715)
.+|+.+........ ...+... .+..|++++.+|.|++||..+|+.+..+..+...+.. .++. + ..|++++.||
T Consensus 297 ~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG 371 (377)
T TIGR03300 297 RSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDG 371 (377)
T ss_pred CCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCc
Confidence 99998876632221 2222222 2346677889999999999999999998866544432 2333 3 3488899999
Q ss_pred eEEEE
Q 048801 653 QIYLL 657 (1715)
Q Consensus 653 ~I~IW 657 (1715)
.|+.|
T Consensus 372 ~l~~~ 376 (377)
T TIGR03300 372 DLYAF 376 (377)
T ss_pred eEEEe
Confidence 99876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.5e-11 Score=122.20 Aligned_cols=88 Identities=17% Similarity=0.252 Sum_probs=80.7
Q ss_pred cccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHH
Q 048801 1628 SRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDW 1707 (1715)
Q Consensus 1628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~ 1707 (1715)
...+.+..|..+++....++|...+..||+++||++||+++.|+++++++.|+++|++||..||.+++.|...|+.|.++
T Consensus 13 ~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~l~~~ 92 (112)
T cd05511 13 KNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSVYTKKAKEMLEL 92 (112)
T ss_pred HhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 33466677888887778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC
Q 048801 1708 FNRTLNKL 1715 (1715)
Q Consensus 1708 ~~~~i~~~ 1715 (1715)
|.+.+..+
T Consensus 93 ~~~~~~~~ 100 (112)
T cd05511 93 AEELLAER 100 (112)
T ss_pred HHHHHHHh
Confidence 99988753
|
Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6e-09 Score=133.20 Aligned_cols=150 Identities=23% Similarity=0.369 Sum_probs=125.8
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE-EEeCCCC
Q 048801 250 IFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS-VLRGHTG 328 (1715)
Q Consensus 250 afSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~-~L~gH~~ 328 (1715)
.++++.-++++|+.-+.|.+|+...-..-..+.||.+.|.++.|+-||+++++.|.|.++++|++++.+... +..+|+.
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa 219 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA 219 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc
Confidence 356777799999999999999987333333689999999999999999999999999999999999988776 7789999
Q ss_pred CeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC
Q 048801 329 AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN 408 (1715)
Q Consensus 329 ~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd 408 (1715)
.|+.++|.|. .+++++.|.++++|+....++. .+ .......|..++..++
T Consensus 220 Rvw~~~~~~n-----~i~t~gedctcrvW~~~~~~l~-~y------------------------~~h~g~~iw~~~~~~~ 269 (967)
T KOG0974|consen 220 RVWACCFLPN-----RIITVGEDCTCRVWGVNGTQLE-VY------------------------DEHSGKGIWKIAVPIG 269 (967)
T ss_pred eeEEEEeccc-----eeEEeccceEEEEEecccceeh-hh------------------------hhhhhcceeEEEEcCC
Confidence 9999999997 6999999999999976543321 11 1112455899999999
Q ss_pred CCeEEEecCCCeEEEEeCCCC
Q 048801 409 GTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 409 G~~LatGs~DG~IrVWDl~t~ 429 (1715)
...++|++.||.+++|++...
T Consensus 270 ~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 270 VIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ceEEEeeccCcchhhhhhhcc
Confidence 999999999999999998754
|
|
| >cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily | Back alignment and domain information |
|---|
Probab=99.14 E-value=6e-11 Score=119.76 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=88.1
Q ss_pred hHHHHHHhhhHHHhhhhccccchhhhhHHHHHHh--hhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhh
Q 048801 1610 SESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAA--QKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNA 1687 (1715)
Q Consensus 1610 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na 1687 (1715)
++.|++|+..+++|... ++....|..+++.. ..++|...+..|||++||++||+++.|.++.++..|+++|++||
T Consensus 2 ~~l~~~~~~il~~l~~~---~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na 78 (108)
T cd05495 2 EELRQALMPTLEKLYKQ---DPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNA 78 (108)
T ss_pred HHHHHHHHHHHHHHHHc---CcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 45688888888888653 23444556655443 57899999999999999999999999999999999999999999
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHhhc
Q 048801 1688 ESYFIKNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1688 ~~~n~~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
.+||.+++.|..+|+.|.+.|.+.+..
T Consensus 79 ~~yN~~~s~i~~~a~~l~~~F~~~~~~ 105 (108)
T cd05495 79 WLYNRKTSRVYKYCTKLAEVFEQEIDP 105 (108)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998875
|
Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.6e-11 Score=120.28 Aligned_cols=102 Identities=20% Similarity=0.239 Sum_probs=87.4
Q ss_pred hHHHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhh
Q 048801 1610 SESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAES 1689 (1715)
Q Consensus 1610 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~ 1689 (1715)
+.+..++...+.++.. .+....|..+++....++|...+..|||++||++||+++.|+++++++.||++|++||.+
T Consensus 11 ~~~~~~c~~il~~l~~----~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~ 86 (115)
T cd05504 11 PLNLSALEQLLVEIVK----HKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFL 86 (115)
T ss_pred HHHHHHHHHHHHHHHh----CCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445555555555543 245566777777777899999999999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1690 YFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1690 ~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
||.+++.|..+|..|.++|.+.+.+|
T Consensus 87 yN~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 87 YNPEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988764
|
Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-09 Score=120.30 Aligned_cols=119 Identities=18% Similarity=0.367 Sum_probs=94.0
Q ss_pred CCCeeEEEeCCCCCEEEEE--ecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeC---CCcEEEEECCC
Q 048801 545 PRGVNMIVWSLDNRFVLAA--IMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGY---DGRTIVWDIWE 619 (1715)
Q Consensus 545 ~~~VtslafSPDG~~LaTg--s~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~---DGtI~VWDl~t 619 (1715)
.+.|.+++|+|+|+.+|+. ..+..|.+||+. ++.+..+. ...++.|.|+| ++++|++|+. .|.|.+||+.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 4569999999999987654 456799999996 77777664 56678999999 6677777764 46799999999
Q ss_pred CceEEEEEcccceEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCcccccccc
Q 048801 620 GTPIRIYEIGRFKLVDGKFSPDGTSIVLSDD------VGQIYLLNTGQGESQKDAKY 670 (1715)
Q Consensus 620 gk~l~tl~~h~~~V~svafSPDG~~LAsgs~------DG~I~IWdl~tGe~~k~~~~ 670 (1715)
.+.+..+. +..++.++|||||++|+++.. |+.+.||+. +|+.+.....
T Consensus 135 ~~~i~~~~--~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~~~ 188 (194)
T PF08662_consen 135 KKKISTFE--HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKKPF 188 (194)
T ss_pred CEEeeccc--cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEecch
Confidence 99988876 335789999999999998754 788999998 5665544443
|
|
| >smart00297 BROMO bromo domain | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-10 Score=117.92 Aligned_cols=103 Identities=21% Similarity=0.362 Sum_probs=90.1
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccC
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFI 1692 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~ 1692 (1715)
+++|...+..+.......+.+..|..+......++|...+..||++++|++||+++.|+++.++..|++.|++||.+||.
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~ 84 (107)
T smart00297 5 QKKLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNG 84 (107)
T ss_pred HHHHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45555555555554445577888888887777899999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhhcC
Q 048801 1693 KNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1693 ~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
+++.+...|+.|.+.|.+.+.++
T Consensus 85 ~~s~~~~~a~~l~~~f~~~~~~~ 107 (107)
T smart00297 85 PDSEVYKDAKKLEKFFEKKLREL 107 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999988753
|
|
| >cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-10 Score=118.12 Aligned_cols=102 Identities=16% Similarity=0.199 Sum_probs=90.1
Q ss_pred CChHHHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhh---hhhhhHHHHHHHHHHHH
Q 048801 1608 IDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVN---NYYRSLEAAKDDINVML 1684 (1715)
Q Consensus 1608 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n---~~Yr~~~~~~~d~~~~~ 1684 (1715)
+++++++++...+.++... +.+..|..+++. ..++|...+..|||++||++||++ ++|.+++++..|+++|+
T Consensus 1 ~~~~~~~~c~~il~~l~~~----~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~ 75 (109)
T cd05502 1 LSPIDQRKCERLLLELYCH----ELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMF 75 (109)
T ss_pred CCHHHHHHHHHHHHHHHhC----CCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Confidence 3567788888888777543 566677777766 789999999999999999999999 59999999999999999
Q ss_pred hhhhhccCCChHHHHHHHHHHHHHHHHhhc
Q 048801 1685 SNAESYFIKNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1685 ~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
+||..||.+++.|..+|+.|.++|.+.+..
T Consensus 76 ~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~ 105 (109)
T cd05502 76 KNCYKFNEEDSEVAQAGKELELFFEEQLKE 105 (109)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998875
|
Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05500 Bromo_BDF1_2_I Bromodomain | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-10 Score=116.91 Aligned_cols=100 Identities=22% Similarity=0.262 Sum_probs=88.9
Q ss_pred CChHHHHHHhhhHHHhhhhccccchhhhhHHHHHHh--hhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 048801 1608 IDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAA--QKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLS 1685 (1715)
Q Consensus 1608 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~ 1685 (1715)
++++.++.++..+.++.+. +....|..+++.. ..++|...+..|+|++||++||+++.|.++.++..|+++|++
T Consensus 1 ~t~~~~~~~~~ii~~l~~~----~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 76 (103)
T cd05500 1 MTKHQHKFLLSSIRSLKRL----KDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVD 76 (103)
T ss_pred CCHHHHHHHHHHHHHHHcC----CCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3567888888888888653 6666777777643 579999999999999999999999999999999999999999
Q ss_pred hhhhccCCChHHHHHHHHHHHHHHHH
Q 048801 1686 NAESYFIKNAALSAKVERLRDWFNRT 1711 (1715)
Q Consensus 1686 Na~~~n~~~~~i~~~~~~l~~~~~~~ 1711 (1715)
||..||.+++.+..+|+.|.+.|.+.
T Consensus 77 Na~~yN~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 77 NCLTFNGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999875
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.3e-11 Score=116.20 Aligned_cols=82 Identities=16% Similarity=0.112 Sum_probs=76.4
Q ss_pred cchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFN 1709 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~ 1709 (1715)
++....|..+++....++|...+..|||++||++||+++.|++++++..||++|++||.+||.+++.+...|+.|.+++.
T Consensus 17 ~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~s~i~~~A~~l~~~~~ 96 (99)
T cd05508 17 QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDHKLTQAAKAIVKICE 96 (99)
T ss_pred CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 45677788888777889999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HH
Q 048801 1710 RT 1711 (1715)
Q Consensus 1710 ~~ 1711 (1715)
+-
T Consensus 97 ~e 98 (99)
T cd05508 97 QE 98 (99)
T ss_pred hh
Confidence 64
|
RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-08 Score=124.91 Aligned_cols=422 Identities=9% Similarity=0.027 Sum_probs=239.4
Q ss_pred ccceeEEEEcCCCCCeEEEEEcCCC------------CEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECC---
Q 048801 231 QKMQNIKKLRGHRDAVYCAIFDRSG------------RFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS--- 295 (1715)
Q Consensus 231 ~~~k~l~~L~GH~~~Vt~VafSpDG------------~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSp--- 295 (1715)
.+.+.++.+.-|...|+.|.|.|-. -+||++...|.|.|||...+..+..+..|..+|.+++|-+
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 4678889999999999999998621 2577777889999999999999889999999999999976
Q ss_pred CC-CEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCC----cceecC
Q 048801 296 NN-TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQY----SPRIYL 370 (1715)
Q Consensus 296 Dg-~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~----l~~i~~ 370 (1715)
+. .+|++-....+|.+|+..+|+.+...........|+.+.|-... .+...+..|.|.+-+.-.... ...+++
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r--h~~~l~s~g~vl~~~~l~~sep~~pgk~~qI 200 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR--HFCVLGSKGFVLSCKDLGLSEPDVPGKEFQI 200 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc--eEEEEccCceEEEEeccCCCCCCCCceeEEE
Confidence 33 46666667789999999999998888766677788999997653 556666667777765432211 111111
Q ss_pred CCCCCCccCccCCCCCCCCCCCCCCCC---cceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCC
Q 048801 371 PKPPDAITGKSNVPSNNGPSSSNGLQS---HQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGH 447 (1715)
Q Consensus 371 ~~~~~~i~g~~~~~~~~~~~~~~~~h~---~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH 447 (1715)
..+.............+.......... -....++|+|.-+.++.......+.|+|+.-.. ++....-.
T Consensus 201 ~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~---------~l~vvpie 271 (1062)
T KOG1912|consen 201 TSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC---------CLAVVPIE 271 (1062)
T ss_pred ecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc---------eeEEEEec
Confidence 111000000000000000000000000 012346678865544444456778899986432 23333333
Q ss_pred CCCeeEEEEccCcccccc-------cccccc-----cccccc----------------cc-------cCCc-ccCceEEE
Q 048801 448 ENDVNYVQFSGCAVASRS-------AMSDAF-----KEENVP----------------KF-------KNSW-FCHDNIVT 491 (1715)
Q Consensus 448 ~~~V~sLafspdg~as~~-------~~~~~~-----~~~~~~----------------~~-------~~s~-~~~~~LaS 491 (1715)
.+.+.-+.+.|++.-... ...... .....+ .+ .... ..+..++.
T Consensus 272 r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~av 351 (1062)
T KOG1912|consen 272 RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAV 351 (1062)
T ss_pred cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhh
Confidence 344444455554310000 000000 000000 00 0000 00122222
Q ss_pred EcCCCeEEEEecCCCccCccccccccccc--ccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-----------CCC
Q 048801 492 CSRDGSAIIWIPRSRRSHGKVGRWTRAYH--LKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-----------DNR 558 (1715)
Q Consensus 492 gS~DGsIrIWDl~t~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-----------DG~ 558 (1715)
.-.+|.+.+|.+.+++.......-...+. +.....+.......-..+...-.|..+.++....| .|+
T Consensus 352 l~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n 431 (1062)
T KOG1912|consen 352 LYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGN 431 (1062)
T ss_pred hhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCC
Confidence 33456666666665443322111000000 00000000000000000111113444444443332 222
Q ss_pred -------EEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEe----------CCCcEEEEECCCCc
Q 048801 559 -------FVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG----------YDGRTIVWDIWEGT 621 (1715)
Q Consensus 559 -------~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs----------~DGtI~VWDl~tgk 621 (1715)
++|.|...|+|.|+|+.++.....+..|.+.|.++.|-- ..-+++.+ .-+.+.|-|+.+|.
T Consensus 432 ~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g--~sslvSfsys~~n~~sg~vrN~l~vtdLrtGl 509 (1062)
T KOG1912|consen 432 TPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG--NSSLVSFSYSHVNSASGGVRNDLVVTDLRTGL 509 (1062)
T ss_pred ccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc--ceeEEEeeeccccccccceeeeEEEEEccccc
Confidence 578899999999999999999999999999999999954 33344433 33567888999985
Q ss_pred eEE--EEE-cccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 622 PIR--IYE-IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 622 ~l~--tl~-~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
-.. .++ ....+|..+..|.-|+||+..-.+--+.|||+.+....
T Consensus 510 sk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~l 556 (1062)
T KOG1912|consen 510 SKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRML 556 (1062)
T ss_pred ccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHH
Confidence 432 222 23567999999999999999999999999999776544
|
|
| >cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-10 Score=119.18 Aligned_cols=99 Identities=17% Similarity=0.245 Sum_probs=83.8
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccC
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFI 1692 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~ 1692 (1715)
++.+...|..+.. .+....|..+++....++|...+..||||+||++||+++.|.++.++..|+++|+.||++||.
T Consensus 7 ~~~c~~il~~l~~----~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~ 82 (119)
T cd05496 7 KKQCKELVNLMWD----CEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTP 82 (119)
T ss_pred HHHHHHHHHHHHh----CCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 3334444444433 245566777777778899999999999999999999999999999999999999999999998
Q ss_pred -CChHHHHHHHHHHHHHHHHhhcC
Q 048801 1693 -KNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1693 -~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
+++.|..+|+.|+++|.+.+..|
T Consensus 83 ~~~s~i~~~a~~L~~~F~~~~~~l 106 (119)
T cd05496 83 NKRSRIYSMTLRLSALFEEHIKKI 106 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999988754
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.3e-09 Score=133.00 Aligned_cols=197 Identities=20% Similarity=0.236 Sum_probs=153.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCC----eEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD----ITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS 321 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~----VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~ 321 (1715)
|....+.-+...++.+..+..+.|||...+..+..+.+.... ..-+-++++.-++++|+.-+.|.+|+......-.
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence 333555666778889989999999999887776665533221 1223456778899999999999999987433333
Q ss_pred EEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCccee
Q 048801 322 VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQIL 401 (1715)
Q Consensus 322 ~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vt 401 (1715)
.+.||.+.|..+.|+-++. ++++.|.|.++++|++.+.+... ....+|...|+
T Consensus 170 ~l~GHeG~iF~i~~s~dg~---~i~s~SdDRsiRlW~i~s~~~~~------------------------~~~fgHsaRvw 222 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGR---YIASVSDDRSIRLWPIDSREVLG------------------------CTGFGHSARVW 222 (967)
T ss_pred eecccCCceEEEEEccCCc---EEEEEecCcceeeeecccccccC------------------------cccccccceeE
Confidence 6889999999999999998 99999999999999999876533 12345788899
Q ss_pred EEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC-CeeEEEEccCccccccccccccccccccccc
Q 048801 402 CCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN-DVNYVQFSGCAVASRSAMSDAFKEENVPKFK 480 (1715)
Q Consensus 402 slafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~-~V~sLafspdg~as~~~~~~~~~~~~~~~~~ 480 (1715)
.++|.|+ .+++++.|-++++|+... ..+..+.+|.. .|..++..+..
T Consensus 223 ~~~~~~n--~i~t~gedctcrvW~~~~----------~~l~~y~~h~g~~iw~~~~~~~~-------------------- 270 (967)
T KOG0974|consen 223 ACCFLPN--RIITVGEDCTCRVWGVNG----------TQLEVYDEHSGKGIWKIAVPIGV-------------------- 270 (967)
T ss_pred EEEeccc--eeEEeccceEEEEEeccc----------ceehhhhhhhhcceeEEEEcCCc--------------------
Confidence 9999999 899999999999997653 23446667754 67788887754
Q ss_pred CCcccCceEEEEcCCCeEEEEecCCCc
Q 048801 481 NSWFCHDNIVTCSRDGSAIIWIPRSRR 507 (1715)
Q Consensus 481 ~s~~~~~~LaSgS~DGsIrIWDl~t~~ 507 (1715)
..++|++.||.+++|++....
T Consensus 271 ------~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 271 ------IIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred ------eEEEeeccCcchhhhhhhccc
Confidence 589999999999999987643
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-08 Score=125.75 Aligned_cols=233 Identities=16% Similarity=0.058 Sum_probs=146.1
Q ss_pred CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC---CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCc
Q 048801 265 RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND---FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSA 341 (1715)
Q Consensus 265 GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D---GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~ 341 (1715)
..|.++|... .....+..+...+.+.+|+|||++||.++.+ ..|++||+.++.... +..+.+.+.+++|+|++..
T Consensus 170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 3588888754 3445566677789999999999999987654 479999998886543 3446667788999999873
Q ss_pred ceEEEEecCCC--cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-C
Q 048801 342 IYQLLSSSDDG--TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-D 418 (1715)
Q Consensus 342 ~~~LaSgS~DG--tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-D 418 (1715)
++++.+.++ .|.+||+.++.... +. .+.......+|+|+|+.|+.++. .
T Consensus 248 --l~~~~~~~~~~~i~~~d~~~~~~~~-l~-------------------------~~~~~~~~~~~s~dg~~l~~~s~~~ 299 (417)
T TIGR02800 248 --LAVSLSKDGNPDIYVMDLDGKQLTR-LT-------------------------NGPGIDTEPSWSPDGKSIAFTSDRG 299 (417)
T ss_pred --EEEEECCCCCccEEEEECCCCCEEE-CC-------------------------CCCCCCCCEEECCCCCEEEEEECCC
Confidence 334444444 58888887654221 10 01112345689999998876654 3
Q ss_pred C--eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC
Q 048801 419 T--FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG 496 (1715)
Q Consensus 419 G--~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG 496 (1715)
+ .|+++++.+++ ...+..+...+..+.|+|++ +.|+.++.++
T Consensus 300 g~~~iy~~d~~~~~----------~~~l~~~~~~~~~~~~spdg--------------------------~~i~~~~~~~ 343 (417)
T TIGR02800 300 GSPQIYMMDADGGE----------VRRLTFRGGYNASPSWSPDG--------------------------DLIAFVHREG 343 (417)
T ss_pred CCceEEEEECCCCC----------EEEeecCCCCccCeEECCCC--------------------------CEEEEEEccC
Confidence 3 57777776532 12233344566778899886 5677666665
Q ss_pred ---eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC---eEE
Q 048801 497 ---SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC---RIC 570 (1715)
Q Consensus 497 ---sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG---tI~ 570 (1715)
.|.+||+.++... .+. ........+|+|||++|+.++.++ .++
T Consensus 344 ~~~~i~~~d~~~~~~~------------------------------~l~-~~~~~~~p~~spdg~~l~~~~~~~~~~~l~ 392 (417)
T TIGR02800 344 GGFNIAVMDLDGGGER------------------------------VLT-DTGLDESPSFAPNGRMILYATTRGGRGVLG 392 (417)
T ss_pred CceEEEEEeCCCCCeE------------------------------Ecc-CCCCCCCceECCCCCEEEEEEeCCCcEEEE
Confidence 6788887652210 000 011123458999999998877654 355
Q ss_pred EEECCCCceEEEEecCCCCeEEEEE
Q 048801 571 VWNAVDGSLVHSLTGHSASSYVLDV 595 (1715)
Q Consensus 571 IWDl~sg~~l~tL~gH~~~V~sLaf 595 (1715)
+.+. +|.....+..+.+.+..++|
T Consensus 393 ~~~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 393 LVST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred EEEC-CCceeeECCCCCCCcCCCCC
Confidence 5553 45555555544444544444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7e-09 Score=120.63 Aligned_cols=259 Identities=13% Similarity=0.105 Sum_probs=185.5
Q ss_pred CCCCeEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCcEEEE------ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 242 HRDAVYCAIFDRSGR--FVITGSDDRLVKIWSMETAFCLAS------CRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 242 H~~~Vt~VafSpDG~--~LaTGS~DGtIrIWDl~tgk~l~t------L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
-...|+.++|.-+++ .|...+.|..+..+.+....+... +.+..+.|..++.. | ..|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-D-GTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-C-CEEEEEecCCcEEEEe
Confidence 445677778876554 455555677777777766554433 34556777777764 3 3677888899999999
Q ss_pred CCCCC----ceEEEeCCCCCeEEEEecCCCCcceEEEEecCC--CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 314 LPDGL----PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD--GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 314 l~tg~----~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D--GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
...+. ++..+..+ ..+..|.-++..+. .+++||.. ..+.|||+...+.+.+ ....+...-+
T Consensus 132 ~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~--Iva~GGke~~n~lkiwdle~~~qiw~--aKNvpnD~L~-------- 198 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY--IVATGGKENINELKIWDLEQSKQIWS--AKNVPNDRLG-------- 198 (412)
T ss_pred ccCCccccccceeeecC-CceeeeccCCCCCc--eEecCchhcccceeeeecccceeeee--ccCCCCcccc--------
Confidence 87543 34444433 45677777776663 57779988 8899999987743322 2111111100
Q ss_pred CCCCCCCCCCcceeEEEEccC--CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc
Q 048801 388 GPSSSNGLQSHQILCCAYNAN--GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSpd--G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~ 465 (1715)
..-.-.++++.|.+. ...||+++.-+.+++||.+.+. +++..+.--+.+|.++...|.+
T Consensus 199 ------LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR--------RPV~~fd~~E~~is~~~l~p~g----- 259 (412)
T KOG3881|consen 199 ------LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR--------RPVAQFDFLENPISSTGLTPSG----- 259 (412)
T ss_pred ------ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC--------cceeEeccccCcceeeeecCCC-----
Confidence 111345788999887 7899999999999999998642 3455666667889999988876
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
+.|++|..-|.+..||++++...+. .+.+-.
T Consensus 260 ---------------------n~Iy~gn~~g~l~~FD~r~~kl~g~----------------------------~~kg~t 290 (412)
T KOG3881|consen 260 ---------------------NFIYTGNTKGQLAKFDLRGGKLLGC----------------------------GLKGIT 290 (412)
T ss_pred ---------------------cEEEEecccchhheecccCceeecc----------------------------ccCCcc
Confidence 7899999999999999997653322 244557
Q ss_pred CCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEE
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL 583 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL 583 (1715)
+.|++|..+|.+.+|++++-|..|+|+|+.+.++++..
T Consensus 291 Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 291 GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 78999999999999999999999999999987666543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-07 Score=113.60 Aligned_cols=277 Identities=14% Similarity=0.131 Sum_probs=169.8
Q ss_pred CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec---------CCCcEEEEecCCCCCcceecCCCCCCCc
Q 048801 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS---------DDGTCRIWDARYSQYSPRIYLPKPPDAI 377 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS---------~DGtVrIWDl~tg~~l~~i~~~~~~~~i 377 (1715)
++|.|.|..+++.+.++.....+- .+ ++|+++. ..++.+ .+..|.+||+.+.+.+..+.++..+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~--lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSF--FAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCE--EEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 899999999999988887443333 34 9999984 334444 6889999999999988877665332211
Q ss_pred cCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-C-CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEE
Q 048801 378 TGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS-S-DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455 (1715)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs-~-DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLa 455 (1715)
. ......++++|||++|.+.. . +..|.++|+.+++. +..+.-. +...-..
T Consensus 103 ~------------------~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv---------v~ei~vp-~~~~vy~ 154 (352)
T TIGR02658 103 V------------------GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF---------VRMMDVP-DCYHIFP 154 (352)
T ss_pred c------------------cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE---------EEEEeCC-CCcEEEE
Confidence 1 12245789999999888765 3 78999999988654 2221111 0111111
Q ss_pred EccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCC
Q 048801 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRG 535 (1715)
Q Consensus 456 fspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 535 (1715)
.+. ..+.+-+.||......+.+..... . .....+. .
T Consensus 155 t~e----------------------------~~~~~~~~Dg~~~~v~~d~~g~~~-~-~~~~vf~--------------~ 190 (352)
T TIGR02658 155 TAN----------------------------DTFFMHCRDGSLAKVGYGTKGNPK-I-KPTEVFH--------------P 190 (352)
T ss_pred ecC----------------------------CccEEEeecCceEEEEecCCCceE-E-eeeeeec--------------C
Confidence 111 122223344444443332211000 0 0000000 0
Q ss_pred CCcccccCCCCCeeEEEeCC-CCCEEEEEecCCeEEEEECCCC-----ceEEEEec-------CCCCeEEEEEccCCCcE
Q 048801 536 GPRQRLLPTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAVDG-----SLVHSLTG-------HSASSYVLDVHPFNPRI 602 (1715)
Q Consensus 536 ~~~~~l~~h~~~VtslafSP-DG~~LaTgs~DGtI~IWDl~sg-----~~l~tL~g-------H~~~V~sLafSP~dg~l 602 (1715)
....+..+ + .|++ +|+++++... |.|.+.|+... .....+.. ..+.+.-++++++++++
T Consensus 191 -~~~~v~~r--P----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 191 -EDEYLINH--P----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred -CccccccC--C----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 00000011 1 3455 8888877766 99999996442 23333221 23445569999966666
Q ss_pred EEEE-e--------CCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCC-EEEEEe-CCCeEEEEECCCCcccccc
Q 048801 603 AMSA-G--------YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGT-SIVLSD-DVGQIYLLNTGQGESQKDA 668 (1715)
Q Consensus 603 LaSg-s--------~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~-~LAsgs-~DG~I~IWdl~tGe~~k~~ 668 (1715)
++.. + ..+.|.++|..+++.+..+..+ ..+..++|+|||+ +|++.. .++.|.|+|+.+++.++..
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 6633 1 1257999999999999999854 4788999999999 777665 6789999999999876543
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-10 Score=113.84 Aligned_cols=98 Identities=19% Similarity=0.315 Sum_probs=86.1
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccC
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFI 1692 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~ 1692 (1715)
+.+|+..+.+.... .....+..|+.+.+....++|...+..||+++||++||+++.|.+++++..|+++|+.||.+||.
T Consensus 5 ~~~l~~~i~~~~d~-~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05517 5 LEQLLEAVMTATDP-SGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNE 83 (103)
T ss_pred HHHHHHHHHHhhCc-CCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45666666665543 45566777888887888899999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 048801 1693 KNAALSAKVERLRDWFNRT 1711 (1715)
Q Consensus 1693 ~~~~i~~~~~~l~~~~~~~ 1711 (1715)
+++.|...|+.|.++|..+
T Consensus 84 ~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05517 84 PGSQVYKDANAIKKIFTAK 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999764
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >cd05499 Bromo_BDF1_2_II Bromodomain | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-10 Score=114.23 Aligned_cols=95 Identities=15% Similarity=0.230 Sum_probs=80.4
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHh--hhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhc
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAA--QKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESY 1690 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~ 1690 (1715)
|.+++..|.+. ...+.+..|..+++.. ..++|...+..||++++|++||+++.|++++++..|+++|++||..|
T Consensus 5 c~~Il~~l~~~----~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~y 80 (102)
T cd05499 5 CEEVLKELMKP----KHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTF 80 (102)
T ss_pred HHHHHHHHHcc----cCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 44444444442 2234556677776655 78999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHH
Q 048801 1691 FIKNAALSAKVERLRDWFNRT 1711 (1715)
Q Consensus 1691 n~~~~~i~~~~~~l~~~~~~~ 1711 (1715)
|.+++.+..+|+.|.++|.++
T Consensus 81 n~~~s~~~~~a~~l~~~fe~~ 101 (102)
T cd05499 81 NPEGTDVYMMGHQLEEVFNDK 101 (102)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999876
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.4e-10 Score=113.04 Aligned_cols=100 Identities=20% Similarity=0.235 Sum_probs=87.3
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccC
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFI 1692 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~ 1692 (1715)
++.|+..+.+.... ...+.+..|+.+.+....++|...+..||+++||++||+++.|.+++++..|+++|+.||.+||.
T Consensus 5 ~~~~~~~i~~~~d~-~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~yN~ 83 (105)
T cd05515 5 LWELYNAVKNYTDG-RGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYNE 83 (105)
T ss_pred HHHHHHHHHHhhCc-CCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 55666666666543 34556677888777778899999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhh
Q 048801 1693 KNAALSAKVERLRDWFNRTLN 1713 (1715)
Q Consensus 1693 ~~~~i~~~~~~l~~~~~~~i~ 1713 (1715)
+++.|...|..|.++|.++-+
T Consensus 84 ~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 84 PDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred CCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999998753
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.1e-10 Score=114.22 Aligned_cols=99 Identities=17% Similarity=0.253 Sum_probs=85.9
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccC
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFI 1692 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~ 1692 (1715)
|..|...+.++.. ++.+..|..+++....++|...+..|||++||++||+++.|.++.++..|+++|++||..||.
T Consensus 5 r~~L~~il~~l~~----~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 80 (112)
T cd05528 5 RLFLRDVLKRLAS----DKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNP 80 (112)
T ss_pred HHHHHHHHHHHHh----CCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCC
Confidence 3444455555543 366677888888888999999999999999999999999999999999999999999999999
Q ss_pred CC----hHHHHHHHHHHHHHHHHhhcC
Q 048801 1693 KN----AALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1693 ~~----~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
++ +.|..+|..|.+.+.+.+.++
T Consensus 81 ~~s~~~s~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 81 DRDPADKLIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHhc
Confidence 95 699999999999999998764
|
Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.5e-07 Score=108.96 Aligned_cols=317 Identities=13% Similarity=0.124 Sum_probs=182.9
Q ss_pred EEEEeCC----CcEEEEeC--CCCcEE--EEecCCCCCeEEEEECCCCCEEEEEeC----CCeeEEEECCCC--C--ceE
Q 048801 258 VITGSDD----RLVKIWSM--ETAFCL--ASCRGHEGDITDLAVSSNNTLVASASN----DFVIRVWRLPDG--L--PIS 321 (1715)
Q Consensus 258 LaTGS~D----GtIrIWDl--~tgk~l--~tL~gHs~~VtsLafSpDg~lLASGS~----DGtIrVWDl~tg--~--~l~ 321 (1715)
++.|+.. +.|.+|.+ .++++. ..+. -......|+++|++++|+++.. ++.|..|.+... . .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4556555 68999888 455432 2222 3445667899999999999877 578999988753 2 233
Q ss_pred EEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCC-CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 322 VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS-QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 322 ~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg-~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
...........++++|++.. ++++...+|.|.++++... ........... .+. .+ ..........
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~--l~vany~~g~v~v~~l~~~g~l~~~~~~~~~----~g~-------g~-~~~rq~~~h~ 146 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRF--LYVANYGGGSVSVFPLDDDGSLGEVVQTVRH----EGS-------GP-NPDRQEGPHP 146 (345)
T ss_dssp EEEESSSCEEEEEECTTSSE--EEEEETTTTEEEEEEECTTSEEEEEEEEEES----EEE-------ES-STTTTSSTCE
T ss_pred eeccCCCCcEEEEEecCCCE--EEEEEccCCeEEEEEccCCcccceeeeeccc----CCC-------CC-cccccccccc
Confidence 33323445678999999882 3444457999999999863 32222111000 000 00 0011123446
Q ss_pred eEEEEccCCCeEEEec-CCCeEEEEeCCCCCccCCCCCceeeeee-cCCCCCeeEEEEccCccccccccccccccccccc
Q 048801 401 LCCAYNANGTVFVTGS-SDTFARVWSACKSSVEDSEQPIHELDVL-SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 401 tslafSpdG~~LatGs-~DG~IrVWDl~t~~~~~~~~~~~~l~~l-~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
.++.|+|+|++|++.. ....|.+|++..... .......+ ......-..++|+|++
T Consensus 147 H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~-----~l~~~~~~~~~~G~GPRh~~f~pdg------------------ 203 (345)
T PF10282_consen 147 HQVVFSPDGRFVYVPDLGADRVYVYDIDDDTG-----KLTPVDSIKVPPGSGPRHLAFSPDG------------------ 203 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEE-TTS------TEEEEEEEECSTTSSEEEEEE-TTS------------------
T ss_pred eeEEECCCCCEEEEEecCCCEEEEEEEeCCCc-----eEEEeeccccccCCCCcEEEEcCCc------------------
Confidence 7899999999877754 345799999875431 01111222 2334456789999986
Q ss_pred ccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC
Q 048801 479 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~ 558 (1715)
...+++...++.|.++++..... .+.....+...+. -.........|+++|||+
T Consensus 204 -------~~~Yv~~e~s~~v~v~~~~~~~g-----~~~~~~~~~~~~~--------------~~~~~~~~~~i~ispdg~ 257 (345)
T PF10282_consen 204 -------KYAYVVNELSNTVSVFDYDPSDG-----SLTEIQTISTLPE--------------GFTGENAPAEIAISPDGR 257 (345)
T ss_dssp -------SEEEEEETTTTEEEEEEEETTTT-----EEEEEEEEESCET--------------TSCSSSSEEEEEE-TTSS
T ss_pred -------CEEEEecCCCCcEEEEeecccCC-----ceeEEEEeeeccc--------------cccccCCceeEEEecCCC
Confidence 24567778899999998872211 1111110000000 001113577899999999
Q ss_pred EEEEEe-cCCeEEEEECC--CCce--EEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC--CCCceEEEEE-ccc
Q 048801 559 FVLAAI-MDCRICVWNAV--DGSL--VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI--WEGTPIRIYE-IGR 630 (1715)
Q Consensus 559 ~LaTgs-~DGtI~IWDl~--sg~~--l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl--~tgk~l~tl~-~h~ 630 (1715)
+|+++. ..+.|.+|++. +|++ +..+.........++++|++..++++.-.++.|.+|++ .+|.+...-. ..-
T Consensus 258 ~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~ 337 (345)
T PF10282_consen 258 FLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPI 337 (345)
T ss_dssp EEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEES
T ss_pred EEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccC
Confidence 988765 46689999983 3443 33444444557899999955555555557789999976 4666544432 122
Q ss_pred ceEEEEEE
Q 048801 631 FKLVDGKF 638 (1715)
Q Consensus 631 ~~V~svaf 638 (1715)
....|+.|
T Consensus 338 ~~p~ci~f 345 (345)
T PF10282_consen 338 PSPVCIVF 345 (345)
T ss_dssp SSEEEEEE
T ss_pred CCCEEEeC
Confidence 34556655
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.7e-08 Score=116.66 Aligned_cols=307 Identities=12% Similarity=0.135 Sum_probs=185.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC-----------CCeeEEEEC
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN-----------DFVIRVWRL 314 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~-----------DGtIrVWDl 314 (1715)
=+-+.|||-|.||+|--.-| |.+|--.+-..++.+. |. .|.-+.|||+.+||+|-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46688999999999997765 8899876666666655 54 5888999999999998643 257999999
Q ss_pred CCCCceEEEeC--CCCCe-EEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 315 PDGLPISVLRG--HTGAV-TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 315 ~tg~~l~~L~g--H~~~V-tsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
.+|...+.+.. ....+ .-..||.+++ +++.-.. ..|.||+..+-.++...
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdK---y~Arm~~-~sisIyEtpsf~lld~K----------------------- 342 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDK---YFARMTG-NSISIYETPSFMLLDKK----------------------- 342 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCc---eeEEecc-ceEEEEecCceeeeccc-----------------------
Confidence 99998888765 22223 3357999988 6666665 45889986543221110
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecC-----CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSS-----DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSA 466 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~-----DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~ 466 (1715)
...-..|....|+|.+++||-=+. -..+.+..+.+.+ .+++..-|.-.=..+.|..+|
T Consensus 343 --slki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~---------~iRt~nlfnVsDckLhWQk~g------ 405 (698)
T KOG2314|consen 343 --SLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKR---------EIRTKNLFNVSDCKLHWQKSG------ 405 (698)
T ss_pred --ccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccc---------eeeeccceeeeccEEEeccCC------
Confidence 111234788899999887774321 1223333333221 122211111111122333322
Q ss_pred ccccccccccccccCCcccCceEEE----------EcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCC
Q 048801 467 MSDAFKEENVPKFKNSWFCHDNIVT----------CSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536 (1715)
Q Consensus 467 ~~~~~~~~~~~~~~~s~~~~~~LaS----------gS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 536 (1715)
++|+. .+.-..+-|+.++....
T Consensus 406 --------------------dyLcvkvdR~tK~~~~g~f~n~eIfrireKdI---------------------------- 437 (698)
T KOG2314|consen 406 --------------------DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI---------------------------- 437 (698)
T ss_pred --------------------cEEEEEEEeeccccccceEeeEEEEEeeccCC----------------------------
Confidence 22221 11111233443332110
Q ss_pred CcccccCCCCCeeEEEeCCCCCEEEEEecC---CeEEEEECCC----CceEEEEecCCCCeEEEEEccCCCcEEEEE---
Q 048801 537 PRQRLLPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAVD----GSLVHSLTGHSASSYVLDVHPFNPRIAMSA--- 606 (1715)
Q Consensus 537 ~~~~l~~h~~~VtslafSPDG~~LaTgs~D---GtI~IWDl~s----g~~l~tL~gH~~~V~sLafSP~dg~lLaSg--- 606 (1715)
+ .........|...+|-|.|..+++-+.+ .+|.+|.+.+ ..++..|.. ...+.|.|+| .|++++.+
T Consensus 438 p-ve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsP-kG~fvvva~l~ 513 (698)
T KOG2314|consen 438 P-VEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSP-KGRFVVVAALV 513 (698)
T ss_pred C-ceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcC-CCcEEEEEEec
Confidence 0 0112234568889999999988775543 4688887763 233444433 3457899999 55555544
Q ss_pred eCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCC
Q 048801 607 GYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDV 651 (1715)
Q Consensus 607 s~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~D 651 (1715)
|..|.+.++|..-..+..+-...+...+.+.|.|.|+|+++++..
T Consensus 514 s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 514 SRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred ccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeeh
Confidence 457899999987433333333345567889999999999998753
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.6e-08 Score=114.30 Aligned_cols=302 Identities=16% Similarity=0.205 Sum_probs=200.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC---------------cEEEEeCCCCcEEEEecCCCCC--eE-EEEECCCCCEEEEEeC
Q 048801 244 DAVYCAIFDRSGRFVITGSDDR---------------LVKIWSMETAFCLASCRGHEGD--IT-DLAVSSNNTLVASASN 305 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DG---------------tIrIWDl~tgk~l~tL~gHs~~--Vt-sLafSpDg~lLASGS~ 305 (1715)
..|.-+.|+|.++||.|-+..+ .+.|||..+|..+..+.+...+ .+ -+.|+.+.+++|-. .
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence 4588999999999999876544 4999999999999999876665 55 67899998887765 3
Q ss_pred CCeeEEEECCCCC----ceEEEeCCCCCeEEEEecCCCCcceEEEE-----ecCCCcEEEEecCCCCCcceecCCCCCCC
Q 048801 306 DFVIRVWRLPDGL----PISVLRGHTGAVTAIAFSPRPSAIYQLLS-----SSDDGTCRIWDARYSQYSPRIYLPKPPDA 376 (1715)
Q Consensus 306 DGtIrVWDl~tg~----~l~~L~gH~~~VtsLafSPdg~~~~~LaS-----gS~DGtVrIWDl~tg~~l~~i~~~~~~~~ 376 (1715)
...++|+++ ++. +.+.++ ...|....|+|.+... .|+. .+.++.+++|.+..+..+.+..+...
T Consensus 151 ~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~-~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~--- 223 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHD-ELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV--- 223 (561)
T ss_pred cCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCc-eEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee---
Confidence 347999997 332 122222 3568888999985443 2332 46788999999876554443322111
Q ss_pred ccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-----------CCCeEEEEeCCCCCccCCCCCceeeeeec
Q 048801 377 ITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS-----------SDTFARVWSACKSSVEDSEQPIHELDVLS 445 (1715)
Q Consensus 377 i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs-----------~DG~IrVWDl~t~~~~~~~~~~~~l~~l~ 445 (1715)
.-..+.|.+.|.+|++-. ....++|+++.... +....
T Consensus 224 ----------------------~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~----------i~V~~ 271 (561)
T COG5354 224 ----------------------SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS----------IPVEK 271 (561)
T ss_pred ----------------------cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc----------cceec
Confidence 123567777777655321 13567788776322 22333
Q ss_pred CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCC
Q 048801 446 GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPP 525 (1715)
Q Consensus 446 gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~ 525 (1715)
...++|...+|.|.+. .--+++|-.+..+.++|++..-
T Consensus 272 ~~~~pVhdf~W~p~S~------------------------~F~vi~g~~pa~~s~~~lr~Nl------------------ 309 (561)
T COG5354 272 DLKDPVHDFTWEPLSS------------------------RFAVISGYMPASVSVFDLRGNL------------------ 309 (561)
T ss_pred cccccceeeeecccCC------------------------ceeEEecccccceeecccccce------------------
Confidence 5578999999999761 1234555688889999887521
Q ss_pred CCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC---CeEEEEECCCCceEE-EEecCCCCeEEEEEccCCCc
Q 048801 526 PPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAVDGSLVH-SLTGHSASSYVLDVHPFNPR 601 (1715)
Q Consensus 526 ~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D---GtI~IWDl~sg~~l~-tL~gH~~~V~sLafSP~dg~ 601 (1715)
........=+.+.|||.++++++++.| |.|-+|+......+. .+.+... .-+.|+| ++.
T Consensus 310 --------------~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~--s~~~wsp-d~q 372 (561)
T COG5354 310 --------------RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT--SYCDWSP-DGQ 372 (561)
T ss_pred --------------EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc--eEeeccC-Cce
Confidence 111122334567899999999998766 579999987655444 5554433 4568999 555
Q ss_pred EEEEEe------CCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCC
Q 048801 602 IAMSAG------YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG 652 (1715)
Q Consensus 602 lLaSgs------~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG 652 (1715)
++.+.. .|..|.|||+.... + ...+.+.|.|.|++..+.+.++
T Consensus 373 F~~~~~ts~k~~~Dn~i~l~~v~g~~-~-------fel~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 373 FYDTDTTSEKLRVDNSIKLWDVYGAK-V-------FELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred EEEecCCCcccccCcceEEEEecCch-h-------hhhhhccccCCcccceeeccCC
Confidence 555442 47889999984332 2 1566788999888776665543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-06 Score=102.51 Aligned_cols=141 Identities=18% Similarity=0.129 Sum_probs=113.8
Q ss_pred cCCCCCeeEEEeCCCCCEEEEEecCC-eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC
Q 048801 542 LPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 542 ~~h~~~VtslafSPDG~~LaTgs~DG-tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
.++.+.|.-..+..++.-++.|..|| .|-|+|..+++ +..+...-+.|.++..++ ++..++.+.....|.+.|+.+|
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididng 433 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNG 433 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCC
Confidence 34666788888988888999999999 89999987765 455666778899999999 7788888888889999999999
Q ss_pred ceEEEEEcccceEEEEEEcCCCCEEEEEeCCC----eEEEEECCCCcccc-----ccccceeecCCCccEEEc
Q 048801 621 TPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG----QIYLLNTGQGESQK-----DAKYDQFFLGDYRPLIRD 684 (1715)
Q Consensus 621 k~l~tl~~h~~~V~svafSPDG~~LAsgs~DG----~I~IWdl~tGe~~k-----~~~~~~~fs~D~r~L~~d 684 (1715)
+....-+...+-|+.++|||++++||-+--+| .|+++|+..++... ..-+..+|-||++.|.+-
T Consensus 434 nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 434 NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence 87665555567799999999999999876655 78999999887653 223556788898888643
|
|
| >cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.3e-10 Score=111.26 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=75.8
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNR 1710 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~ 1710 (1715)
+....|..+++....++|...+..|||++||++||+++.|.++.++..|+++|++||.+||.+++.|...|.+|++.|.+
T Consensus 16 ~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~le~~f~~ 95 (97)
T cd05505 16 RFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSYVLSCMRKTEQCCVN 95 (97)
T ss_pred CCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 45566777777777899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred Hh
Q 048801 1711 TL 1712 (1715)
Q Consensus 1711 ~i 1712 (1715)
.|
T Consensus 96 ~~ 97 (97)
T cd05505 96 LL 97 (97)
T ss_pred hC
Confidence 64
|
The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1e-07 Score=115.48 Aligned_cols=301 Identities=15% Similarity=0.184 Sum_probs=190.0
Q ss_pred CeEEEEEcCCCCEEEEE-----eC-----CCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEEC
Q 048801 245 AVYCAIFDRSGRFVITG-----SD-----DRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL 314 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTG-----S~-----DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl 314 (1715)
.++++.|+|-|.+|.|- .. ...+++|+++++.....+......-+++.|+.|..+.|-- ..+.|.+|++
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~ 153 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDL 153 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEec
Confidence 78999999999998863 11 2357899999965555444322222689999987654432 3468999998
Q ss_pred CCCCceEEEeCCCCCeEEEEecCCCCcceEEE-----EecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCC
Q 048801 315 PDGLPISVLRGHTGAVTAIAFSPRPSAIYQLL-----SSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 315 ~tg~~l~~L~gH~~~VtsLafSPdg~~~~~La-----SgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
.+.+.+.. .-|...|+.+.++|.+... .++ ..|.-+.|+||.+.-......+.
T Consensus 154 ~~f~~~~~-kl~~~~i~~f~lSpgp~~~-~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a-------------------- 211 (566)
T KOG2315|consen 154 GSFKTIQH-KLSVSGITMLSLSPGPEPP-FVAVYVPEKKGAPASVRIYKYPEEGQHQPVA-------------------- 211 (566)
T ss_pred CCccceee-eeeccceeeEEecCCCCCc-eEEEEccCCCCCCcEEEEeccccccccchhh--------------------
Confidence 76433222 2367789999999974432 333 24566789999775222111110
Q ss_pred CCCCCCCCcceeEEEEccCCC-eEEEecC-----------CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEc
Q 048801 390 SSSNGLQSHQILCCAYNANGT-VFVTGSS-----------DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS 457 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpdG~-~LatGs~-----------DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafs 457 (1715)
........=..+.|++-|. +|+.++. ...++++++... ....--...++|.++.|+
T Consensus 212 --~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~----------s~~V~L~k~GPVhdv~W~ 279 (566)
T KOG2315|consen 212 --NKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE----------SVSVPLLKEGPVHDVTWS 279 (566)
T ss_pred --hccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc----------eEEEecCCCCCceEEEEC
Confidence 0011111223566777664 3332221 235666666521 122222347899999999
Q ss_pred cCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC
Q 048801 458 GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537 (1715)
Q Consensus 458 pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 537 (1715)
+++. .-.++.|-.-..+.|||++..-
T Consensus 280 ~s~~------------------------EF~VvyGfMPAkvtifnlr~~~------------------------------ 305 (566)
T KOG2315|consen 280 PSGR------------------------EFAVVYGFMPAKVTIFNLRGKP------------------------------ 305 (566)
T ss_pred CCCC------------------------EEEEEEecccceEEEEcCCCCE------------------------------
Confidence 9871 1234556677788999887311
Q ss_pred cccccCCCCCeeEEEeCCCCCEEEEEecC---CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEe------C
Q 048801 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG------Y 608 (1715)
Q Consensus 538 ~~~l~~h~~~VtslafSPDG~~LaTgs~D---GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs------~ 608 (1715)
.+.-..++-+++-|+|.|++|+.++-+ |.|-|||+.+.+++..+..... +-+.|+| ||.+++|+. .
T Consensus 306 --v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~P-dGe~flTATTaPRlrv 380 (566)
T KOG2315|consen 306 --VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSP-DGEYFLTATTAPRLRV 380 (566)
T ss_pred --eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcC-CCcEEEEEeccccEEe
Confidence 112234556789999999999988765 6899999999988888876544 4678999 666666665 3
Q ss_pred CCcEEEEECCCCceEEEEEcccceEEEEEEcCC
Q 048801 609 DGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPD 641 (1715)
Q Consensus 609 DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPD 641 (1715)
|+.++||++ +|..+....-.. ..+.+.|-|-
T Consensus 381 dNg~Kiwhy-tG~~l~~~~f~s-EL~qv~W~P~ 411 (566)
T KOG2315|consen 381 DNGIKIWHY-TGSLLHEKMFKS-ELLQVEWRPF 411 (566)
T ss_pred cCCeEEEEe-cCceeehhhhhH-hHhheeeeec
Confidence 788999997 777765443211 4566666653
|
|
| >cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.8e-10 Score=113.10 Aligned_cols=85 Identities=16% Similarity=0.177 Sum_probs=76.5
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCCh-HHHHHHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNA-ALSAKVERLRDWFN 1709 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~-~i~~~~~~l~~~~~ 1709 (1715)
+....|..+++....++|...+..|||++||++||+++.|.++++++.|+++|++||..||.+.+ .+..+|+.|.+.+.
T Consensus 24 ~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN~~~s~~~~~~A~~l~~~~~ 103 (112)
T cd05510 24 EHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNSDPSHPLRRHANFMKKKAE 103 (112)
T ss_pred ccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 44566777777778899999999999999999999999999999999999999999999999765 67889999999999
Q ss_pred HHhhcC
Q 048801 1710 RTLNKL 1715 (1715)
Q Consensus 1710 ~~i~~~ 1715 (1715)
..+..|
T Consensus 104 ~~~~~~ 109 (112)
T cd05510 104 HLLKLI 109 (112)
T ss_pred HHHHHC
Confidence 888764
|
SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.7e-10 Score=111.15 Aligned_cols=96 Identities=22% Similarity=0.357 Sum_probs=81.9
Q ss_pred HHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCC
Q 048801 1615 KLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKN 1694 (1715)
Q Consensus 1615 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~ 1694 (1715)
.|+..+...... ...+.+..|..+......++|...+..||+++||++||+++.|+++.++..|+++|++||.+||.++
T Consensus 7 ~l~~~i~~~~~~-~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~ 85 (103)
T cd05520 7 QLYDTIRNARNN-QGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPN 85 (103)
T ss_pred HHHHHHHhhcCC-CCCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 344444444322 2345566788887778889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHH
Q 048801 1695 AALSAKVERLRDWFNRT 1711 (1715)
Q Consensus 1695 ~~i~~~~~~l~~~~~~~ 1711 (1715)
+.+..+|+.|.++|..+
T Consensus 86 s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 86 SRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999865
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.5e-10 Score=111.32 Aligned_cols=102 Identities=21% Similarity=0.285 Sum_probs=85.2
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccC
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFI 1692 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~ 1692 (1715)
.++|+..+.+.... .....+..|..+......++|...+..||+++||++||+++.|.++.++..|+++|++||.+||.
T Consensus 6 ~~~il~~v~~~~d~-~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (107)
T cd05516 6 MNKIVDVVIKYKDS-DGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTFNL 84 (107)
T ss_pred HHHHHHHHHhhhCc-CCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34455555554322 23334566777777778899999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhhcC
Q 048801 1693 KNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1693 ~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
+++.|..+|..|.++|.+..+++
T Consensus 85 ~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 85 EGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999887654
|
SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.1e-08 Score=120.42 Aligned_cols=234 Identities=15% Similarity=0.053 Sum_probs=144.3
Q ss_pred cEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC---CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcc
Q 048801 266 LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND---FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAI 342 (1715)
Q Consensus 266 tIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D---GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~ 342 (1715)
.|.++|.+.+. .+.+..+...+...+|+|||+.|+..+.+ ..|.+|++.++.... +....+.+...+|+|++..
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~- 256 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSK- 256 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCE-
Confidence 47778877554 45555677889999999999999877643 368999998886543 3334455667999999983
Q ss_pred eEEEEecCCC--cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-CC
Q 048801 343 YQLLSSSDDG--TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-DT 419 (1715)
Q Consensus 343 ~~LaSgS~DG--tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-DG 419 (1715)
++++...+| .|.+||+.++.... +. .+........|+|||+.|+..+. +|
T Consensus 257 -la~~~~~~g~~~Iy~~d~~~~~~~~-lt-------------------------~~~~~~~~~~~spDg~~i~f~s~~~g 309 (430)
T PRK00178 257 -LAFVLSKDGNPEIYVMDLASRQLSR-VT-------------------------NHPAIDTEPFWGKDGRTLYFTSDRGG 309 (430)
T ss_pred -EEEEEccCCCceEEEEECCCCCeEE-cc-------------------------cCCCCcCCeEECCCCCEEEEEECCCC
Confidence 233454455 57888887765321 11 01122456789999998776553 33
Q ss_pred --eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC-CC
Q 048801 420 --FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR-DG 496 (1715)
Q Consensus 420 --~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~-DG 496 (1715)
.|+++++.+++. ..+. ..+ .......|+|++ +.|+..+. ++
T Consensus 310 ~~~iy~~d~~~g~~-------~~lt-~~~--~~~~~~~~Spdg--------------------------~~i~~~~~~~~ 353 (430)
T PRK00178 310 KPQIYKVNVNGGRA-------ERVT-FVG--NYNARPRLSADG--------------------------KTLVMVHRQDG 353 (430)
T ss_pred CceEEEEECCCCCE-------EEee-cCC--CCccceEECCCC--------------------------CEEEEEEccCC
Confidence 567777765432 1111 111 223356788876 45554443 33
Q ss_pred --eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC---CeEEE
Q 048801 497 --SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD---CRICV 571 (1715)
Q Consensus 497 --sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D---GtI~I 571 (1715)
.|.+||+.++... .+. .........|+|||++|+..+.+ ..|++
T Consensus 354 ~~~l~~~dl~tg~~~------------------------------~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~ 402 (430)
T PRK00178 354 NFHVAAQDLQRGSVR------------------------------ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLML 402 (430)
T ss_pred ceEEEEEECCCCCEE------------------------------Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 4777887754310 000 00111235899999999877654 35777
Q ss_pred EECCCCceEEEEecCCCCeEEEEEcc
Q 048801 572 WNAVDGSLVHSLTGHSASSYVLDVHP 597 (1715)
Q Consensus 572 WDl~sg~~l~tL~gH~~~V~sLafSP 597 (1715)
+++ +|.....+..+.+.+...+|+|
T Consensus 403 ~~~-~g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 403 VSI-NGRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred EEC-CCCceEECcCCCCCcCCCccCC
Confidence 777 4555556665666777788877
|
|
| >cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.5e-10 Score=110.82 Aligned_cols=81 Identities=17% Similarity=0.336 Sum_probs=73.9
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNR 1710 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~ 1710 (1715)
+....|+.+++....++|...+..|||++||++||++..|+++.++..|+++|++||..||.+++.|.+.|+.|.+.|.+
T Consensus 16 ~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~ 95 (97)
T cd05503 16 EDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSEVGRAGHNMRKFFEK 95 (97)
T ss_pred CCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 45556777776667899999999999999999999999999999999999999999999999999999999999999976
Q ss_pred H
Q 048801 1711 T 1711 (1715)
Q Consensus 1711 ~ 1711 (1715)
.
T Consensus 96 ~ 96 (97)
T cd05503 96 R 96 (97)
T ss_pred h
Confidence 3
|
Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-07 Score=117.86 Aligned_cols=249 Identities=14% Similarity=0.084 Sum_probs=146.4
Q ss_pred CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCC--cEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG--TCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DG--tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
..|.+.|.+.+. .+.+......+.+-+|+|++....++++...+| .|.+.++.+++.......
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-------------- 229 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-------------- 229 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC--------------
Confidence 357777765444 445655666778889999987432333444444 577778876653221111
Q ss_pred CCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-----CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccC
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-----DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGC 459 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-----DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspd 459 (1715)
.......+|+|||+.|+..+. +..+.+|++..+.. .........+.......+|+|+
T Consensus 230 ------------~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~------g~~~~lt~~~~~~~~~p~wSPD 291 (428)
T PRK01029 230 ------------QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI------GKPRRLLNEAFGTQGNPSFSPD 291 (428)
T ss_pred ------------CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC------CcceEeecCCCCCcCCeEECCC
Confidence 112345799999988876543 22344466654211 1111222222334467899998
Q ss_pred cccccccccccccccccccccCCcccCceEEEE-cCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCc
Q 048801 460 AVASRSAMSDAFKEENVPKFKNSWFCHDNIVTC-SRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPR 538 (1715)
Q Consensus 460 g~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSg-S~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 538 (1715)
| ..|+.. ..+|...||.+.... .+...
T Consensus 292 G--------------------------~~Laf~s~~~g~~~ly~~~~~~--------------------------~g~~~ 319 (428)
T PRK01029 292 G--------------------------TRLVFVSNKDGRPRIYIMQIDP--------------------------EGQSP 319 (428)
T ss_pred C--------------------------CEEEEEECCCCCceEEEEECcc--------------------------cccce
Confidence 7 455544 456766666432100 00011
Q ss_pred ccccCCCCCeeEEEeCCCCCEEEEEecC---CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeC--CCcEE
Q 048801 539 QRLLPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGY--DGRTI 613 (1715)
Q Consensus 539 ~~l~~h~~~VtslafSPDG~~LaTgs~D---GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~--DGtI~ 613 (1715)
..+......+...+|||||++|+..+.+ ..|++||+.+++... +......+..+.|+|++..+++++.. ...|+
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 1222233456778999999999876653 469999998887644 43334456789999955555555543 35688
Q ss_pred EEECCCCceEEEEEcccceEEEEEEcCCC
Q 048801 614 VWDIWEGTPIRIYEIGRFKLVDGKFSPDG 642 (1715)
Q Consensus 614 VWDl~tgk~l~tl~~h~~~V~svafSPDG 642 (1715)
+||+..++...... ..+.+...+|+|-.
T Consensus 399 ~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 399 LISLITKKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred EEECCCCCEEEeec-CCCcccCceecCCC
Confidence 89998777655443 45556778888854
|
|
| >cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.3e-10 Score=110.63 Aligned_cols=80 Identities=20% Similarity=0.133 Sum_probs=71.5
Q ss_pred cchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFN 1709 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~ 1709 (1715)
.....-|..+++....++|...+..|||++||++||+++.|.++++++.|+++|+.||.+||.|++.+.++|+.|.+.=+
T Consensus 16 ~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~ 95 (98)
T cd05513 16 KDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDTIYYKAAKKLLHSGM 95 (98)
T ss_pred CCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhh
Confidence 34455567777666789999999999999999999999999999999999999999999999999999999999977644
|
The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.3e-10 Score=112.00 Aligned_cols=103 Identities=14% Similarity=0.263 Sum_probs=89.3
Q ss_pred HHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhcc
Q 048801 1612 SRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYF 1691 (1715)
Q Consensus 1612 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n 1691 (1715)
.+.+|+..+.+.... .....+.-|..+......++|...+..||+++||++||+++.|.++.++..|+++|++||.+||
T Consensus 6 ~c~~il~~l~~~~~~-~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN 84 (113)
T cd05524 6 VCQELYDTIRNYKSE-DGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAYY 84 (113)
T ss_pred HHHHHHHHHHhhccc-CCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 467777777776443 3344556677777777889999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1692 IKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1692 ~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
.+++.+...|..|.++|.+.+++|
T Consensus 85 ~~~s~~~~~A~~L~~~f~~~~~~~ 108 (113)
T cd05524 85 KPDSPEHKDACKLWELFLSARNEV 108 (113)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999887754
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.2e-08 Score=120.84 Aligned_cols=234 Identities=13% Similarity=0.018 Sum_probs=142.1
Q ss_pred cEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC---CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcc
Q 048801 266 LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND---FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAI 342 (1715)
Q Consensus 266 tIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D---GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~ 342 (1715)
.|.++|..... .+.+..+...+.+..|||||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|+++.
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~- 275 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKK- 275 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCE-
Confidence 57777865443 35566677889999999999998876543 258899998876533 3323344557899999983
Q ss_pred eEEEEecCCCc--EEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-CC
Q 048801 343 YQLLSSSDDGT--CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-DT 419 (1715)
Q Consensus 343 ~~LaSgS~DGt--VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-DG 419 (1715)
++++.+.+|. |.+||+.+++... +. .+.......+|+|||+.|+..+. ++
T Consensus 276 -La~~~~~~g~~~Iy~~dl~tg~~~~-lt-------------------------~~~~~~~~p~wSpDG~~I~f~s~~~g 328 (448)
T PRK04792 276 -LALVLSKDGQPEIYVVDIATKALTR-IT-------------------------RHRAIDTEPSWHPDGKSLIFTSERGG 328 (448)
T ss_pred -EEEEEeCCCCeEEEEEECCCCCeEE-Cc-------------------------cCCCCccceEECCCCCEEEEEECCCC
Confidence 3344566665 7777877654221 10 01123456789999998876553 33
Q ss_pred --eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEc-CCC
Q 048801 420 --FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RDG 496 (1715)
Q Consensus 420 --~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~DG 496 (1715)
.|.++++.+++. ..+..........+|+|++ +.|+..+ .++
T Consensus 329 ~~~Iy~~dl~~g~~----------~~Lt~~g~~~~~~~~SpDG--------------------------~~l~~~~~~~g 372 (448)
T PRK04792 329 KPQIYRVNLASGKV----------SRLTFEGEQNLGGSITPDG--------------------------RSMIMVNRTNG 372 (448)
T ss_pred CceEEEEECCCCCE----------EEEecCCCCCcCeeECCCC--------------------------CEEEEEEecCC
Confidence 466666655421 1111122223456888887 4554443 345
Q ss_pred e--EEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC-C--eEEE
Q 048801 497 S--AIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD-C--RICV 571 (1715)
Q Consensus 497 s--IrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D-G--tI~I 571 (1715)
. |.++|+.++... .+... .......|+|||+.|+..+.+ + .|++
T Consensus 373 ~~~I~~~dl~~g~~~------------------------------~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~ 421 (448)
T PRK04792 373 KFNIARQDLETGAMQ------------------------------VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAA 421 (448)
T ss_pred ceEEEEEECCCCCeE------------------------------EccCC-CCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 4 444565543210 00000 011134799999998876644 3 3777
Q ss_pred EECCCCceEEEEecCCCCeEEEEEcc
Q 048801 572 WNAVDGSLVHSLTGHSASSYVLDVHP 597 (1715)
Q Consensus 572 WDl~sg~~l~tL~gH~~~V~sLafSP 597 (1715)
++. +|.....+..+.+.+...+|+|
T Consensus 422 ~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 422 VSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EEC-CCCceEECcCCCCCcCCCccCC
Confidence 786 6777777777777788888987
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.4e-08 Score=120.21 Aligned_cols=175 Identities=18% Similarity=0.201 Sum_probs=128.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCC------------CEEEEEeCCCeeEEE
Q 048801 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNN------------TLVASASNDFVIRVW 312 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg------------~lLASGS~DGtIrVW 312 (1715)
.-.++.|+|.| +||-|+. ..|.|-|..+.+.++++.-|...|+.+.|.|-. -+||++...|.|.||
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 35677788887 7777765 589999999999999999999999999998721 267888889999999
Q ss_pred ECCCCCceEEEeCCCCCeEEEEecCCCCcc-eEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 313 RLPDGLPISVLRGHTGAVTAIAFSPRPSAI-YQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 313 Dl~tg~~l~~L~gH~~~VtsLafSPdg~~~-~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
|...+..+..+..|..+|..++|-+..... ..|+.-....+|.+|+..+|+.......
T Consensus 95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y--------------------- 153 (1062)
T KOG1912|consen 95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY--------------------- 153 (1062)
T ss_pred EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc---------------------
Confidence 999999888899999999999998754332 3566667778999999999886544321
Q ss_pred CCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCC
Q 048801 392 SNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE 448 (1715)
Q Consensus 392 ~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~ 448 (1715)
......|+.+.| |.+.|..-+..|.+.+-+....+ ....+++.++....|.
T Consensus 154 ----s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~s--ep~~pgk~~qI~sd~S 205 (1062)
T KOG1912|consen 154 ----SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLS--EPDVPGKEFQITSDHS 205 (1062)
T ss_pred ----CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCC--CCCCCceeEEEecCcc
Confidence 122356788888 55667766677888777664322 2223444454444443
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-08 Score=111.61 Aligned_cols=148 Identities=19% Similarity=0.285 Sum_probs=105.2
Q ss_pred EEEEcCCCCEEEEEeC----------CCcEEEEeCC-CCcEEEEecC-CCCCeEEEEECCCCCEEEEE--eCCCeeEEEE
Q 048801 248 CAIFDRSGRFVITGSD----------DRLVKIWSME-TAFCLASCRG-HEGDITDLAVSSNNTLVASA--SNDFVIRVWR 313 (1715)
Q Consensus 248 ~VafSpDG~~LaTGS~----------DGtIrIWDl~-tgk~l~tL~g-Hs~~VtsLafSpDg~lLASG--S~DGtIrVWD 313 (1715)
.+.|+++|.+|+.-.. -|...||-+. .+.....+.- ..++|.+++|+|+|..+|+. ..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 4668899987765432 2345566552 2233444432 45579999999999987654 4577999999
Q ss_pred CCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecC---CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCC
Q 048801 314 LPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD---DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPS 390 (1715)
Q Consensus 314 l~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~---DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~ 390 (1715)
+. +..+..+. ...+..|.|+|+|+ +|++++. .|.|.+||+.+.+.+...
T Consensus 90 ~~-~~~i~~~~--~~~~n~i~wsP~G~---~l~~~g~~n~~G~l~~wd~~~~~~i~~~---------------------- 141 (194)
T PF08662_consen 90 VK-GKKIFSFG--TQPRNTISWSPDGR---FLVLAGFGNLNGDLEFWDVRKKKKISTF---------------------- 141 (194)
T ss_pred Cc-ccEeEeec--CCCceEEEECCCCC---EEEEEEccCCCcEEEEEECCCCEEeecc----------------------
Confidence 96 66666663 56788999999998 6777654 467999999866543322
Q ss_pred CCCCCCCcceeEEEEccCCCeEEEecC------CCeEEEEeCCC
Q 048801 391 SSNGLQSHQILCCAYNANGTVFVTGSS------DTFARVWSACK 428 (1715)
Q Consensus 391 ~~~~~h~~~VtslafSpdG~~LatGs~------DG~IrVWDl~t 428 (1715)
....++.++|+|+|++|++++. |..++||+...
T Consensus 142 -----~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 142 -----EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred -----ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 1223789999999999999874 67889999853
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-07 Score=118.15 Aligned_cols=233 Identities=15% Similarity=0.068 Sum_probs=138.9
Q ss_pred CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecC---CCcEEEEecCCCCCcceecCCCCCCCccCccCC
Q 048801 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD---DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~---DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~ 383 (1715)
..|.++|.. +.....+..+...+.+.+|+|+++ +|+.++. ...|++||+.++.......
T Consensus 170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~---~la~~~~~~~~~~i~v~d~~~g~~~~~~~-------------- 231 (417)
T TIGR02800 170 YELQVADYD-GANPQTITRSREPILSPAWSPDGQ---KLAYVSFESGKPEIYVQDLATGQREKVAS-------------- 231 (417)
T ss_pred ceEEEEcCC-CCCCEEeecCCCceecccCCCCCC---EEEEEEcCCCCcEEEEEECCCCCEEEeec--------------
Confidence 358888875 444555666777899999999998 5554433 3579999998765321110
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccCCCeEEE-ecCCC--eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCc
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNANGTVFVT-GSSDT--FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpdG~~Lat-Gs~DG--~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg 460 (1715)
+...+.+++|+|+|+.|+. .+.++ .|++|++.++. ...+..+........|+|++
T Consensus 232 ------------~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~----------~~~l~~~~~~~~~~~~s~dg 289 (417)
T TIGR02800 232 ------------FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ----------LTRLTNGPGIDTEPSWSPDG 289 (417)
T ss_pred ------------CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC----------EEECCCCCCCCCCEEECCCC
Confidence 1123456899999987764 44444 58888887643 22233344445567888876
Q ss_pred ccccccccccccccccccccCCcccCceEEEE-cCCC--eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTC-SRDG--SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSg-S~DG--sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 537 (1715)
..|+.+ ..+| .|.++++.++.
T Consensus 290 --------------------------~~l~~~s~~~g~~~iy~~d~~~~~------------------------------ 313 (417)
T TIGR02800 290 --------------------------KSIAFTSDRGGSPQIYMMDADGGE------------------------------ 313 (417)
T ss_pred --------------------------CEEEEEECCCCCceEEEEECCCCC------------------------------
Confidence 455444 3444 46666655422
Q ss_pred cccccCCCCCeeEEEeCCCCCEEEEEecCC---eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCC--cE
Q 048801 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDG--RT 612 (1715)
Q Consensus 538 ~~~l~~h~~~VtslafSPDG~~LaTgs~DG---tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DG--tI 612 (1715)
...+..+...+..++|+|+|++|+.++.++ .|.+||+.++.. ..+... .......|+|++..++++...++ .+
T Consensus 314 ~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 314 VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEE
Confidence 111222233456789999999999988776 899999987654 333322 22345689995555555444443 34
Q ss_pred EEEECCCCceEEEEEcccceEEEEEE
Q 048801 613 IVWDIWEGTPIRIYEIGRFKLVDGKF 638 (1715)
Q Consensus 613 ~VWDl~tgk~l~tl~~h~~~V~svaf 638 (1715)
.+.+. +|.....+..+.+.+..++|
T Consensus 392 ~~~~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 392 GLVST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred EEEEC-CCceeeECCCCCCCcCCCCC
Confidence 45453 45555555433334444444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-06 Score=103.80 Aligned_cols=285 Identities=12% Similarity=0.039 Sum_probs=169.5
Q ss_pred CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC----------CCeeEEEECCCCCceEEEeCCC-------
Q 048801 265 RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN----------DFVIRVWRLPDGLPISVLRGHT------- 327 (1715)
Q Consensus 265 GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~----------DGtIrVWDl~tg~~l~~L~gH~------- 327 (1715)
+.|.+.|..+++.+.++.....+-. + +||||+.|+.+.. +..|.|||+.+++.+..+....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 8999999999999998875544433 4 9999998887755 7899999999999998886322
Q ss_pred CCeEEEEecCCCCcceEEEEec--CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEE
Q 048801 328 GAVTAIAFSPRPSAIYQLLSSS--DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAY 405 (1715)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgS--~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtslaf 405 (1715)
.....++++|+++ +|+... -+..|.+.|+.+++.+..+..+....... ...-..+..
T Consensus 105 ~~~~~~~ls~dgk---~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~------------------t~e~~~~~~ 163 (352)
T TIGR02658 105 TYPWMTSLTPDNK---TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFP------------------TANDTFFMH 163 (352)
T ss_pred CccceEEECCCCC---EEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEE------------------ecCCccEEE
Confidence 2334789999998 555443 37999999999999877765532110000 000111122
Q ss_pred ccCCCeEEEe-cCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeE-EEEccCcccccccccccccccccccccCCc
Q 048801 406 NANGTVFVTG-SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNY-VQFSGCAVASRSAMSDAFKEENVPKFKNSW 483 (1715)
Q Consensus 406 SpdG~~LatG-s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~s-Lafspdg~as~~~~~~~~~~~~~~~~~~s~ 483 (1715)
+.||.++... ..+|...+=. ...+.+-..++.. -.|.+.
T Consensus 164 ~~Dg~~~~v~~d~~g~~~~~~---------------~~vf~~~~~~v~~rP~~~~~------------------------ 204 (352)
T TIGR02658 164 CRDGSLAKVGYGTKGNPKIKP---------------TEVFHPEDEYLINHPAYSNK------------------------ 204 (352)
T ss_pred eecCceEEEEecCCCceEEee---------------eeeecCCccccccCCceEcC------------------------
Confidence 2333322211 1122211000 0000000000000 012220
Q ss_pred ccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEE
Q 048801 484 FCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAA 563 (1715)
Q Consensus 484 ~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTg 563 (1715)
++..+..... |+|.+.|+........ ..|... .. . ...---.++++.-++++++++.+++.
T Consensus 205 -dg~~~~vs~e-G~V~~id~~~~~~~~~-~~~~~~-~~--------------~-~~~~~wrP~g~q~ia~~~dg~~lyV~ 265 (352)
T TIGR02658 205 -SGRLVWPTYT-GKIFQIDLSSGDAKFL-PAIEAF-TE--------------A-EKADGWRPGGWQQVAYHRARDRIYLL 265 (352)
T ss_pred -CCcEEEEecC-CeEEEEecCCCcceec-ceeeec-cc--------------c-ccccccCCCcceeEEEcCCCCEEEEE
Confidence 1234444444 9999999764321110 000000 00 0 00001124455559999999998885
Q ss_pred ec----------CCeEEEEECCCCceEEEEecCCCCeEEEEEccCCC-cEEEEEeCCCcEEEEECCCCceEEEE-Ecccc
Q 048801 564 IM----------DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP-RIAMSAGYDGRTIVWDIWEGTPIRIY-EIGRF 631 (1715)
Q Consensus 564 s~----------DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg-~lLaSgs~DGtI~VWDl~tgk~l~tl-~~h~~ 631 (1715)
.. .+.|.++|+.+++.+..+.. ...+..|+++|++. .++++...++.|.|.|+.+++.++.+ ..+..
T Consensus 266 ~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~vg~~ 344 (352)
T TIGR02658 266 ADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQLGRG 344 (352)
T ss_pred ecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccCCCC
Confidence 32 24799999999999998874 34688999999655 44445557899999999999999988 43433
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-09 Score=109.11 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=86.0
Q ss_pred HHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhcc
Q 048801 1612 SRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYF 1691 (1715)
Q Consensus 1612 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n 1691 (1715)
.+++|+..+.++.. ......+.-|..+......++|...+..||+++||++||+++.|.++.++..|+++|++||.+||
T Consensus 4 ~~~~i~~~v~~~~~-~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn 82 (103)
T cd05519 4 AMLEIYDAVLNCED-ETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYN 82 (103)
T ss_pred HHHHHHHHHHHhcC-cCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 35667777776653 23445566777787777889999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHH
Q 048801 1692 IKNAALSAKVERLRDWFNRT 1711 (1715)
Q Consensus 1692 ~~~~~i~~~~~~l~~~~~~~ 1711 (1715)
.+++.|..+|+.|++.|..+
T Consensus 83 ~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 83 QEGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999875
|
SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-07 Score=120.43 Aligned_cols=234 Identities=15% Similarity=0.074 Sum_probs=141.7
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec-CC--CcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS-DD--GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS-~D--GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
.|.++|..... .+.+..+...+.+..|+|++. .|+..+ .+ ..|.+||+.+++.......
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~---~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-------------- 260 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGR---KLAYVSFENRKAEIFVQDIYTQVREKVTSF-------------- 260 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCC---EEEEEEecCCCcEEEEEECCCCCeEEecCC--------------
Confidence 57777864443 455666778899999999998 454433 23 3588889877653211000
Q ss_pred CCCCCCCCCCCCCcceeEEEEccCCCeEEE-ecCCCe--EEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcc
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNANGTVFVT-GSSDTF--ARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAV 461 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSpdG~~Lat-Gs~DG~--IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~ 461 (1715)
.......+|+|||+.|+. .+.+|. |++||+.+++ ...+..+.......+|+|++
T Consensus 261 ------------~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~----------~~~lt~~~~~~~~p~wSpDG- 317 (448)
T PRK04792 261 ------------PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA----------LTRITRHRAIDTEPSWHPDG- 317 (448)
T ss_pred ------------CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC----------eEECccCCCCccceEECCCC-
Confidence 111235799999997765 455564 7777876543 23334444556778899987
Q ss_pred cccccccccccccccccccCCcccCceE-EEEcCCCe--EEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCc
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHDNI-VTCSRDGS--AIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPR 538 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~~L-aSgS~DGs--IrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 538 (1715)
+.| ++...+|. |.++|+.+++.
T Consensus 318 -------------------------~~I~f~s~~~g~~~Iy~~dl~~g~~------------------------------ 342 (448)
T PRK04792 318 -------------------------KSLIFTSERGGKPQIYRVNLASGKV------------------------------ 342 (448)
T ss_pred -------------------------CEEEEEECCCCCceEEEEECCCCCE------------------------------
Confidence 444 44444554 44455544321
Q ss_pred ccccCCCCCeeEEEeCCCCCEEEEEecC-C--eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCc--EE
Q 048801 539 QRLLPTPRGVNMIVWSLDNRFVLAAIMD-C--RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGR--TI 613 (1715)
Q Consensus 539 ~~l~~h~~~VtslafSPDG~~LaTgs~D-G--tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGt--I~ 613 (1715)
..+..........+|+|||++|+..+.+ + .|.++|+.+++.. .+.... ......|+|++..++++...+|. +.
T Consensus 343 ~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 343 SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC-CCCCceECCCCCEEEEEEecCCceEEE
Confidence 0111111122346899999999876653 3 5677888887653 333221 22345899966666666655554 67
Q ss_pred EEECCCCceEEEEEcccceEEEEEEcC
Q 048801 614 VWDIWEGTPIRIYEIGRFKLVDGKFSP 640 (1715)
Q Consensus 614 VWDl~tgk~l~tl~~h~~~V~svafSP 640 (1715)
+++. +|.....+..+.+.+...+|||
T Consensus 421 ~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 421 AVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EEEC-CCCceEECcCCCCCcCCCccCC
Confidence 7776 6777777765556677788887
|
|
| >cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.5e-10 Score=109.41 Aligned_cols=79 Identities=25% Similarity=0.341 Sum_probs=71.9
Q ss_pred cchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWF 1708 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~ 1708 (1715)
.+...-|..+++....++|...+..|||++||++||+++.|.+++++..||++|++||..||.+++.+.+.|..|.+.=
T Consensus 16 ~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~~A~~l~~~~ 94 (98)
T cd05512 16 KDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDTIFYRAAVRLRDQG 94 (98)
T ss_pred CCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhh
Confidence 4555667777777778999999999999999999999999999999999999999999999999999999999998753
|
BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-06 Score=118.53 Aligned_cols=351 Identities=15% Similarity=0.182 Sum_probs=206.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC---------------C--------CcEEEEecC----------------
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSME---------------T--------AFCLASCRG---------------- 283 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~---------------t--------gk~l~tL~g---------------- 283 (1715)
...|.|++||||+.+||....+|+|.+-+-. . |+.-..|+|
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 5689999999999999999989888876421 0 000011111
Q ss_pred --------CCCCeEEEEECCCCCEEEEEeC---C---CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec
Q 048801 284 --------HEGDITDLAVSSNNTLVASASN---D---FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS 349 (1715)
Q Consensus 284 --------Hs~~VtsLafSpDg~lLASGS~---D---GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS 349 (1715)
+...-..|+|-.||.++|+.+. . ..|+||+- .|....+-..-.+--.+++|.|.|. +|++..
T Consensus 200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~---lIA~~q 275 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGN---LIASSQ 275 (928)
T ss_pred ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCC---EEEEEE
Confidence 2334567889999999998875 2 47999995 4765555444444456889999997 666654
Q ss_pred C---CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeC
Q 048801 350 D---DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSA 426 (1715)
Q Consensus 350 ~---DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl 426 (1715)
. ...|.+|.-+ |.....+.++. ......|..++|++++..||+...|. |.+|..
T Consensus 276 ~~~~~~~VvFfErN-GLrhgeF~l~~---------------------~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~ 332 (928)
T PF04762_consen 276 RLPDRHDVVFFERN-GLRHGEFTLRF---------------------DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR 332 (928)
T ss_pred EcCCCcEEEEEecC-CcEeeeEecCC---------------------CCCCceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence 3 3445566532 22222222211 12345689999999999999987655 999988
Q ss_pred CCCCccCCCCCceeeeeec-CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEec--
Q 048801 427 CKSSVEDSEQPIHELDVLS-GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIP-- 503 (1715)
Q Consensus 427 ~t~~~~~~~~~~~~l~~l~-gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl-- 503 (1715)
.+.. ....+.+. .....+..+.|+|.. ...|...+.+|.+..+++
T Consensus 333 ~NYH-------WYLKqei~~~~~~~~~~~~Wdpe~-------------------------p~~L~v~t~~g~~~~~~~~~ 380 (928)
T PF04762_consen 333 SNYH-------WYLKQEIRFSSSESVNFVKWDPEK-------------------------PLRLHVLTSNGQYEIYDFAW 380 (928)
T ss_pred eCCE-------EEEEEEEEccCCCCCCceEECCCC-------------------------CCEEEEEecCCcEEEEEEEE
Confidence 7532 11222222 122345558898864 245555555565544332
Q ss_pred --CCCccC-----ccc----ccc--cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEE
Q 048801 504 --RSRRSH-----GKV----GRW--TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRIC 570 (1715)
Q Consensus 504 --~t~~~~-----~~~----~~~--~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~ 570 (1715)
..+... +.+ |.. ...+....-|+|+. ......+..|.+++|++++..+++-..||.|.
T Consensus 381 ~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs---------~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~ 451 (928)
T PF04762_consen 381 DVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMS---------SYELELPSPVNDVAFSPSNSRFAVLTSDGSLS 451 (928)
T ss_pred EEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHh---------ceEEcCCCCcEEEEEeCCCCeEEEEECCCCEE
Confidence 211100 000 000 00111111122221 12223457899999999999899999999999
Q ss_pred EEECCCCce--------EEEEe----------cCCCCeEEEEEccCCCcEEEEEeCC---CcEEEEECCCCc---eEEEE
Q 048801 571 VWNAVDGSL--------VHSLT----------GHSASSYVLDVHPFNPRIAMSAGYD---GRTIVWDIWEGT---PIRIY 626 (1715)
Q Consensus 571 IWDl~sg~~--------l~tL~----------gH~~~V~sLafSP~dg~lLaSgs~D---GtI~VWDl~tgk---~l~tl 626 (1715)
+|....... ...+. .....+..++|.. +..+++....+ +.+.++++...+ .+...
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 530 (928)
T PF04762_consen 452 IYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLN-DDTLLVLSDSDSNQSKIVLVDIDDSENSASVESS 530 (928)
T ss_pred EEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeC-CCEEEEEEecCcccceEEEEEeccCCCceeEEEE
Confidence 998543221 11111 1234567888876 44554444443 678888874432 33333
Q ss_pred EcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 627 EIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 627 ~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
....+.+..+...++...++.-..+|.|+..+....
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 531 TEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGE 566 (928)
T ss_pred eccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCC
Confidence 334455666666666666777788999997776544
|
|
| >cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.1e-09 Score=107.51 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=81.7
Q ss_pred HHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCC
Q 048801 1615 KLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKN 1694 (1715)
Q Consensus 1615 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~ 1694 (1715)
.|+..+.+... ....+.+.-|+.+......++|...+..||+++||+++|+++.|.++.++..|+++|+.||..||.++
T Consensus 7 ~l~~~v~~~~d-~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 85 (103)
T cd05518 7 ALFLYVLEYRE-GSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEEG 85 (103)
T ss_pred HHHHHHHHhhc-cCCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 34555555432 23445566677777777889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHH
Q 048801 1695 AALSAKVERLRDWFNRT 1711 (1715)
Q Consensus 1695 ~~i~~~~~~l~~~~~~~ 1711 (1715)
+.|...|+.|+++|..+
T Consensus 86 s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 86 SQVYEDANILEKVLKEK 102 (103)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999998764
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.9e-07 Score=107.90 Aligned_cols=276 Identities=15% Similarity=0.110 Sum_probs=165.7
Q ss_pred CCeEEEEEcCCCCEEEEEeC----CCcEEEEeCCC--Cc--EEEEecCCCCCeEEEEECCCCCEEEEEeC-CCeeEEEEC
Q 048801 244 DAVYCAIFDRSGRFVITGSD----DRLVKIWSMET--AF--CLASCRGHEGDITDLAVSSNNTLVASASN-DFVIRVWRL 314 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~----DGtIrIWDl~t--gk--~l~tL~gHs~~VtsLafSpDg~lLASGS~-DGtIrVWDl 314 (1715)
..-..++++|++++|.++.. +|.|..|.+.. +. .+............++++|++++|+++.. +|+|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34556889999999999876 57899998865 33 33334434455678999999999999875 899999999
Q ss_pred CC-CCceEE---Ee----------CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCC--CcceecCCCCCCCcc
Q 048801 315 PD-GLPISV---LR----------GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQ--YSPRIYLPKPPDAIT 378 (1715)
Q Consensus 315 ~t-g~~l~~---L~----------gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~--~l~~i~~~~~~~~i~ 378 (1715)
.. |..... +. .......++.|+|+++. .+++.-....|.+|++.... +......
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~--v~v~dlG~D~v~~~~~~~~~~~l~~~~~~-------- 186 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRF--VYVPDLGADRVYVYDIDDDTGKLTPVDSI-------- 186 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSE--EEEEETTTTEEEEEEE-TTS-TEEEEEEE--------
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCE--EEEEecCCCEEEEEEEeCCCceEEEeecc--------
Confidence 86 433322 21 12245789999999983 33444445679999987654 2111100
Q ss_pred CccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEe-cCCCeEEEEeCCCCCccCCCCCceeeeeecC-C--CCCeeEE
Q 048801 379 GKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG-SSDTFARVWSACKSSVEDSEQPIHELDVLSG-H--ENDVNYV 454 (1715)
Q Consensus 379 g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatG-s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g-H--~~~V~sL 454 (1715)
..........++|+|+|+++.+. -.++.|.+|++..... .......+..+.. . ......|
T Consensus 187 --------------~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i 250 (345)
T PF10282_consen 187 --------------KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG--SLTEIQTISTLPEGFTGENAPAEI 250 (345)
T ss_dssp --------------ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT--EEEEEEEEESCETTSCSSSSEEEE
T ss_pred --------------ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC--ceeEEEEeeeccccccccCCceeE
Confidence 01123447899999999877554 4578899999872211 0011111222211 1 1257788
Q ss_pred EEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 455 QFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 455 afspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
+++|++ ...+++....++|.+|++.... +.+
T Consensus 251 ~ispdg-------------------------~~lyvsnr~~~sI~vf~~d~~~--g~l---------------------- 281 (345)
T PF10282_consen 251 AISPDG-------------------------RFLYVSNRGSNSISVFDLDPAT--GTL---------------------- 281 (345)
T ss_dssp EE-TTS-------------------------SEEEEEECTTTEEEEEEECTTT--TTE----------------------
T ss_pred EEecCC-------------------------CEEEEEeccCCEEEEEEEecCC--Cce----------------------
Confidence 999987 2355666678899999985311 000
Q ss_pred CCCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEEC--CCCceEEEEe-cCCCCeEEEEE
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNA--VDGSLVHSLT-GHSASSYVLDV 595 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl--~sg~~l~tL~-gH~~~V~sLaf 595 (1715)
..+..+.......+.++++|+|++|+++. .++.|.+|++ .+|.+...-. ..-....||.|
T Consensus 282 -~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 282 -TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp -EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred -EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 00111111233478899999999999887 4568888866 5666554432 22334456655
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.7e-06 Score=113.86 Aligned_cols=349 Identities=13% Similarity=0.186 Sum_probs=205.1
Q ss_pred CeEEEEEcCCCCEEE--EEeCCC--cEEEEeCCCC---cEEEEec-----CCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 245 AVYCAIFDRSGRFVI--TGSDDR--LVKIWSMETA---FCLASCR-----GHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 245 ~Vt~VafSpDG~~La--TGS~DG--tIrIWDl~tg---k~l~tL~-----gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
.+...+|......++ ++.... .|.+...... ..+..+. ...+.|.++.+.++...|+.+..+|.|.+.
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV 102 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence 456666766554333 332222 3444433322 2333333 345789999999999999999999999999
Q ss_pred ----ECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCC---------------
Q 048801 313 ----RLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKP--------------- 373 (1715)
Q Consensus 313 ----Dl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~--------------- 373 (1715)
+..+.. +...-.-...|.+++||||.. .|+..+.+++|.+.+- +...+....+...
T Consensus 103 ~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~E---lla~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkK 177 (928)
T PF04762_consen 103 REDPDPDEDE-IEIVGSVDSGILAASWSPDEE---LLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKK 177 (928)
T ss_pred EccCCCCCce-eEEEEEEcCcEEEEEECCCcC---EEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcc
Confidence 443332 222223457899999999998 7788887888887642 2221211111100
Q ss_pred CCCccCccCCC------CCCCC---CCCCCCCCcceeEEEEccCCCeEEEecC---C---CeEEEEeCCCCCccCCCCCc
Q 048801 374 PDAITGKSNVP------SNNGP---SSSNGLQSHQILCCAYNANGTVFVTGSS---D---TFARVWSACKSSVEDSEQPI 438 (1715)
Q Consensus 374 ~~~i~g~~~~~------~~~~~---~~~~~~h~~~VtslafSpdG~~LatGs~---D---G~IrVWDl~t~~~~~~~~~~ 438 (1715)
.....|..... ....+ ..... ....-..|+|-.||.+||+.+- . ..++||+-. |.+
T Consensus 178 eTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L------- 248 (928)
T PF04762_consen 178 ETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GEL------- 248 (928)
T ss_pred cCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceE-------
Confidence 00111110000 00000 11112 4456678999999999998874 2 478999875 322
Q ss_pred eeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC---CCeEEEEecCCCccCcccccc
Q 048801 439 HELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR---DGSAIIWIPRSRRSHGKVGRW 515 (1715)
Q Consensus 439 ~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~---DGsIrIWDl~t~~~~~~~~~~ 515 (1715)
..+...-.+--.+++|.|.| +.|++... .-.|.+|.-. |-.++.
T Consensus 249 --~stSE~v~gLe~~l~WrPsG--------------------------~lIA~~q~~~~~~~VvFfErN-GLrhge---- 295 (928)
T PF04762_consen 249 --QSTSEPVDGLEGALSWRPSG--------------------------NLIASSQRLPDRHDVVFFERN-GLRHGE---- 295 (928)
T ss_pred --EeccccCCCccCCccCCCCC--------------------------CEEEEEEEcCCCcEEEEEecC-CcEeee----
Confidence 11111122223467888876 56666543 2345555432 211111
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce--EEEEec-CCCCeEE
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL--VHSLTG-HSASSYV 592 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~--l~tL~g-H~~~V~s 592 (1715)
|.+ ........|..++|++|+..||....|. |.+|-..+..- .+.+.- ....+..
T Consensus 296 ---F~l------------------~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~ 353 (928)
T PF04762_consen 296 ---FTL------------------RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNF 353 (928)
T ss_pred ---Eec------------------CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCc
Confidence 111 1122345689999999999999977665 99999877542 233332 2333455
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEEC----CCCc--------eEEEEE-----------------------cccceEEEEE
Q 048801 593 LDVHPFNPRIAMSAGYDGRTIVWDI----WEGT--------PIRIYE-----------------------IGRFKLVDGK 637 (1715)
Q Consensus 593 LafSP~dg~lLaSgs~DGtI~VWDl----~tgk--------~l~tl~-----------------------~h~~~V~sva 637 (1715)
+.|+|..+..|.....+|.+..+++ ..+. .+..+. ....+|.+++
T Consensus 354 ~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~va 433 (928)
T PF04762_consen 354 VKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVA 433 (928)
T ss_pred eEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEE
Confidence 9999987777777777677655432 2111 122221 1245789999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 638 FSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 638 fSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
|++++..+|+-..||.|.+|.....
T Consensus 434 f~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 434 FSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred EeCCCCeEEEEECCCCEEEEEecCC
Confidence 9999999999999999999986543
|
|
| >cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.8e-09 Score=107.05 Aligned_cols=98 Identities=17% Similarity=0.172 Sum_probs=82.4
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccC
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFI 1692 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~ 1692 (1715)
.++|+..+..+... .......-|+.+......++|...+..||+++||++||++ |.++.++..|+++|++||.+||+
T Consensus 6 ~~~l~~~i~~~~~~-~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~yN~ 82 (106)
T cd05521 6 LKPLYDGIYTLKEE-NGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARLYNT 82 (106)
T ss_pred HHHHHHHHHhhcCc-CCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHcC
Confidence 44566666666543 2333445566666666789999999999999999999999 99999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhh
Q 048801 1693 KNAALSAKVERLRDWFNRTLN 1713 (1715)
Q Consensus 1693 ~~~~i~~~~~~l~~~~~~~i~ 1713 (1715)
+++.|...|..|+++|.++|-
T Consensus 83 ~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 83 KGSVIYKYALILEKYINDVII 103 (106)
T ss_pred CCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999998873
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-07 Score=116.50 Aligned_cols=235 Identities=12% Similarity=0.043 Sum_probs=140.8
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCC---CcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD---GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D---GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
.|.++|.+.+. ...+..+...+...+|+|+++ .|+..+.+ ..|.+|++.+++......
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~---~la~~s~~~~~~~l~~~~l~~g~~~~l~~--------------- 240 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGK---RIAYVSFEQKRPRIFVQNLDTGRREQITN--------------- 240 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCC---EEEEEEcCCCCCEEEEEECCCCCEEEccC---------------
Confidence 47777876444 455666778899999999998 55544322 468889998765321100
Q ss_pred CCCCCCCCCCCCCcceeEEEEccCCCeEEE-ecCCC--eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcc
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNANGTVFVT-GSSDT--FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAV 461 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSpdG~~Lat-Gs~DG--~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~ 461 (1715)
....+...+|+|||+.|+. ...+| .|++||+.++. ...+..+........|+|++
T Consensus 241 -----------~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~----------~~~lt~~~~~~~~~~~spDg- 298 (430)
T PRK00178 241 -----------FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ----------LSRVTNHPAIDTEPFWGKDG- 298 (430)
T ss_pred -----------CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC----------eEEcccCCCCcCCeEECCCC-
Confidence 0112346899999998774 44444 68888887643 22334444456677899987
Q ss_pred cccccccccccccccccccCCcccCceE-EEEcCCC--eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCc
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHDNI-VTCSRDG--SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPR 538 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~~L-aSgS~DG--sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 538 (1715)
+.| ++...+| .|.++++.+++..
T Consensus 299 -------------------------~~i~f~s~~~g~~~iy~~d~~~g~~~----------------------------- 324 (430)
T PRK00178 299 -------------------------RTLYFTSDRGGKPQIYKVNVNGGRAE----------------------------- 324 (430)
T ss_pred -------------------------CEEEEEECCCCCceEEEEECCCCCEE-----------------------------
Confidence 444 4444444 4555666543210
Q ss_pred ccccCCCCCeeEEEeCCCCCEEEEEecCC---eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCC--cEE
Q 048801 539 QRLLPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDG--RTI 613 (1715)
Q Consensus 539 ~~l~~h~~~VtslafSPDG~~LaTgs~DG---tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DG--tI~ 613 (1715)
.+..........+|+|||++|+..+.++ .|.+||+.+++.. .+.. ........|+|++..++++...+| .|.
T Consensus 325 -~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~ 401 (430)
T PRK00178 325 -RVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLM 401 (430)
T ss_pred -EeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEE
Confidence 0000011223468999999998876532 5889999887653 3332 222235689995555555554444 466
Q ss_pred EEECCCCceEEEEEcccceEEEEEEcCC
Q 048801 614 VWDIWEGTPIRIYEIGRFKLVDGKFSPD 641 (1715)
Q Consensus 614 VWDl~tgk~l~tl~~h~~~V~svafSPD 641 (1715)
++++ .|.....+..+.+.+...+|||-
T Consensus 402 ~~~~-~g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 402 LVSI-NGRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EEEC-CCCceEECcCCCCCcCCCccCCC
Confidence 6676 45444455544556667777763
|
|
| >cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-09 Score=107.51 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=72.0
Q ss_pred chhhhhHHHHHHh--hhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAA--QKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWF 1708 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~ 1708 (1715)
+....|..+++.. ..++|...+..||+++||++||+++.|++++++..|+++|++||..||.+++.|..+|+.|.+.|
T Consensus 19 ~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~i~~~a~~l~~~f 98 (102)
T cd05498 19 AYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYNPPDHPVHAMARKLQDVF 98 (102)
T ss_pred cccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 4445566655433 57899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 048801 1709 NRT 1711 (1715)
Q Consensus 1709 ~~~ 1711 (1715)
.++
T Consensus 99 e~~ 101 (102)
T cd05498 99 EDR 101 (102)
T ss_pred HHh
Confidence 764
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.2e-07 Score=113.35 Aligned_cols=242 Identities=12% Similarity=0.053 Sum_probs=142.6
Q ss_pred CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEE---EEEeCC--CeeEEEECCCCCceEEEeCCCCCeEEEEecCCC
Q 048801 265 RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV---ASASND--FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRP 339 (1715)
Q Consensus 265 GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lL---ASGS~D--GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg 339 (1715)
..|.+.|.+.+.. +.+......+.+-+|||||+.+ ++...+ ..|.+.++.+|+... +....+.....+|+|||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCC
Confidence 4677777765544 4455556677888999999752 234333 357788988776543 33355566778999999
Q ss_pred CcceEEEE-ecCCC----cEEEEecCCCCC--cceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeE
Q 048801 340 SAIYQLLS-SSDDG----TCRIWDARYSQY--SPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVF 412 (1715)
Q Consensus 340 ~~~~~LaS-gS~DG----tVrIWDl~tg~~--l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~L 412 (1715)
+ .|+. ...+| .+.+|++..+.. ...+. ..........+|+|||+.|
T Consensus 243 ~---~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt------------------------~~~~~~~~~p~wSPDG~~L 295 (428)
T PRK01029 243 K---LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL------------------------NEAFGTQGNPSFSPDGTRL 295 (428)
T ss_pred C---EEEEEECCCCCcceeEEEeecccCCCCcceEee------------------------cCCCCCcCCeEECCCCCEE
Confidence 8 4443 32223 344466654311 00110 0011223567999999987
Q ss_pred EEec-CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEE
Q 048801 413 VTGS-SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVT 491 (1715)
Q Consensus 413 atGs-~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaS 491 (1715)
+..+ .+|...||.+.... . ......+..+...+....|+|++ +.|+.
T Consensus 296 af~s~~~g~~~ly~~~~~~---~---g~~~~~lt~~~~~~~~p~wSPDG--------------------------~~Laf 343 (428)
T PRK01029 296 VFVSNKDGRPRIYIMQIDP---E---GQSPRLLTKKYRNSSCPAWSPDG--------------------------KKIAF 343 (428)
T ss_pred EEEECCCCCceEEEEECcc---c---ccceEEeccCCCCccceeECCCC--------------------------CEEEE
Confidence 7665 45655555442110 0 01123344444567788999987 55555
Q ss_pred EcC-C--CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec---
Q 048801 492 CSR-D--GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM--- 565 (1715)
Q Consensus 492 gS~-D--GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~--- 565 (1715)
.+. + ..|.+||+.+++. ..+......+....|+|||+.|+..+.
T Consensus 344 ~~~~~g~~~I~v~dl~~g~~------------------------------~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g 393 (428)
T PRK01029 344 CSVIKGVRQICVYDLATGRD------------------------------YQLTTSPENKESPSWAIDSLHLVYSAGNSN 393 (428)
T ss_pred EEcCCCCcEEEEEECCCCCe------------------------------EEccCCCCCccceEECCCCCEEEEEECCCC
Confidence 443 2 3688888876431 111111234566899999998876543
Q ss_pred CCeEEEEECCCCceEEEEecCCCCeEEEEEccC
Q 048801 566 DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPF 598 (1715)
Q Consensus 566 DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~ 598 (1715)
...|++|++..++..... ...+.+...+|+|.
T Consensus 394 ~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 394 ESELYLISLITKKTRKIV-IGSGEKRFPSWGAF 425 (428)
T ss_pred CceEEEEECCCCCEEEee-cCCCcccCceecCC
Confidence 357999999877654443 34455677888873
|
|
| >PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.5e-09 Score=103.24 Aligned_cols=73 Identities=21% Similarity=0.314 Sum_probs=65.3
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVER 1703 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~ 1703 (1715)
+....|..++.....++|...+..|++|++|++||+|+.|++++++..||+.|++||..||++++.+...|+.
T Consensus 12 ~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~~A~~ 84 (84)
T PF00439_consen 12 PISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYKAAEK 84 (84)
T ss_dssp TTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHH
T ss_pred CCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHHHhcC
Confidence 4566677777778889999999999999999999999999999999999999999999999999999999974
|
Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A .... |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.7e-09 Score=121.65 Aligned_cols=175 Identities=19% Similarity=0.267 Sum_probs=134.9
Q ss_pred eEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-------CCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 048801 235 NIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSME-------TAFCLASCRGHEGDITDLAVSSNNTLVASASNDF 307 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~-------tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DG 307 (1715)
.+..+.||+..|..++--.+.+-+++++.|.+|++|.+. |..+..+++.|..+|.++.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 466789999999999888888899999999999999975 335778899999999999999998888775 78
Q ss_pred eeEEEECCCCCceEEEe--CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 308 VIRVWRLPDGLPISVLR--GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~--gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
.|.+||.--|+++.... ...+.+..+...++-.....++.++...+|+++|.+.......+.+-..
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna------------ 872 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA------------ 872 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC------------
Confidence 99999988887776432 1223344444444422111444557889999999998887666544221
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~ 431 (1715)
.+.+..+.|++.-+.|+++++|-.+|.|.+.|.+++++
T Consensus 873 --------~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 873 --------PGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV 910 (1034)
T ss_pred --------CCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce
Confidence 12245589999999999999999999999999999865
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.3e-08 Score=118.15 Aligned_cols=213 Identities=15% Similarity=0.149 Sum_probs=154.2
Q ss_pred cCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccC
Q 048801 407 ANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCH 486 (1715)
Q Consensus 407 pdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~ 486 (1715)
|.+.++|....||.++||+..++++.....| ...-.+...+..|.-. +... ..+.-..........+.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p------~~~~s~t~~~~~w~L~--~~~s----~~k~~~~~~~~~~s~~t 70 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAP------IASLSGTCTYTKWGLS--ADYS----PMKWLSLEKAKKASLDT 70 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeecc------chhccCcceeEEEEEE--eccc----hHHHHhHHHHhhccCCc
Confidence 4567899999999999999988765332222 1222334455555410 0000 00000000011112334
Q ss_pred ceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC
Q 048801 487 DNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD 566 (1715)
Q Consensus 487 ~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D 566 (1715)
..++-|...|.|.+|++..++...++ ....|.+.|+++.++.+-..|.+++.|
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~---------------------------st~~h~~~v~~~~~~~~~~ciyS~~ad 123 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKL---------------------------STDKHYGNVNEILDAQRLGCIYSVGAD 123 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEE---------------------------ecCCCCCcceeeecccccCceEecCCc
Confidence 68899999999999998865532221 224588899999999999999999999
Q ss_pred CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCC-----
Q 048801 567 CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPD----- 641 (1715)
Q Consensus 567 GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPD----- 641 (1715)
+.|..|+...+..++.+.+....+.+++.+| ++.++++|+ +.|++||+.+++.+.+|.+|.++|.++.|.-+
T Consensus 124 ~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~ 200 (541)
T KOG4547|consen 124 LKVVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGII 200 (541)
T ss_pred eeEEEEecccceeeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccc
Confidence 9999999999999999999999999999999 578887775 68999999999999999999999999999887
Q ss_pred CCEEEEE-eCCCeEEEEECCC
Q 048801 642 GTSIVLS-DDVGQIYLLNTGQ 661 (1715)
Q Consensus 642 G~~LAsg-s~DG~I~IWdl~t 661 (1715)
|.++.++ ..+..|.+|-+..
T Consensus 201 G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 201 GKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cceeeeccccccceeEEEEEc
Confidence 7777654 4455677776643
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-06 Score=108.53 Aligned_cols=279 Identities=15% Similarity=0.118 Sum_probs=165.5
Q ss_pred CCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCC
Q 048801 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDA 376 (1715)
Q Consensus 297 g~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~ 376 (1715)
+..|++++.+|.|..+|..+|+.+............++. ++. .++.++.+|.|..+|..+|+.+.......
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~---~v~v~~~~g~l~ald~~tG~~~W~~~~~~---- 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGG---LVFVGTEKGEVIALDAEDGKELWRAKLSS---- 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCC---EEEEEcCCCEEEEEECCCCcEeeeeccCc----
Confidence 568888889999999999999988776544332223333 233 67888899999999999988765443211
Q ss_pred ccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEE
Q 048801 377 ITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF 456 (1715)
Q Consensus 377 i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLaf 456 (1715)
.+.+.... .+..+++++.+|.|+.||..+++. +.........+ .+..
T Consensus 136 ----------------------~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~---------~W~~~~~~~~~-~~~~ 182 (377)
T TIGR03300 136 ----------------------EVLSPPLV-ANGLVVVRTNDGRLTALDAATGER---------LWTYSRVTPAL-TLRG 182 (377)
T ss_pred ----------------------eeecCCEE-ECCEEEEECCCCeEEEEEcCCCce---------eeEEccCCCce-eecC
Confidence 01111011 234566677899999999987653 11111111100 0000
Q ss_pred ccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCC
Q 048801 457 SGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536 (1715)
Q Consensus 457 spdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 536 (1715)
... + ......++.+..+|.+..+|+.+++.. |...... + . ...
T Consensus 183 ~~s-----------------p-----~~~~~~v~~~~~~g~v~ald~~tG~~~-----W~~~~~~--~--~------g~~ 225 (377)
T TIGR03300 183 SAS-----------------P-----VIADGGVLVGFAGGKLVALDLQTGQPL-----WEQRVAL--P--K------GRT 225 (377)
T ss_pred CCC-----------------C-----EEECCEEEEECCCCEEEEEEccCCCEe-----eeecccc--C--C------CCC
Confidence 000 0 001246778888999999999886532 2211100 0 0 000
Q ss_pred CcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 537 PRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 537 ~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
....+... .....+ .+..+++++.+|.++.||..+|+.+...... ....+.. .+ ..++.++.||.|..+|
T Consensus 226 ~~~~~~~~---~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~--~~-~~vyv~~~~G~l~~~d 295 (377)
T TIGR03300 226 ELERLVDV---DGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV--DD-NRLYVTDADGVVVALD 295 (377)
T ss_pred chhhhhcc---CCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE--eC-CEEEEECCCCeEEEEE
Confidence 00000000 001111 3557778888999999999999988776521 1122222 23 4455667899999999
Q ss_pred CCCCceEEEEEcccc-eEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 617 IWEGTPIRIYEIGRF-KLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 617 l~tgk~l~tl~~h~~-~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
..+|+.+........ ....... .+..|++++.+|.|++|+..+|+.+.
T Consensus 296 ~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 296 RRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred CCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 999998866532111 1222222 46789999999999999999998764
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-08 Score=123.35 Aligned_cols=287 Identities=21% Similarity=0.233 Sum_probs=187.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCcEEEEecCCC--CCeEEEEECCCC---CEEEEEeCCCeeEEEECCC
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSME-TAFCLASCRGHE--GDITDLAVSSNN---TLVASASNDFVIRVWRLPD 316 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~-tgk~l~tL~gHs--~~VtsLafSpDg---~lLASGS~DGtIrVWDl~t 316 (1715)
.+.+.++.++|.|+-+|+++.-|.. |-|+. .+...+-|. |. -.|-.+.|++.. .++++.+. ..-.||++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCc-chhhhhhhhc
Confidence 3567788999999999999987754 44554 333333333 32 246677888743 34555544 4566898853
Q ss_pred ---CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCC
Q 048801 317 ---GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393 (1715)
Q Consensus 317 ---g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~ 393 (1715)
...-..+.+|...|+.+.|.|.... .|++++.|-.+..||+++...-. ...
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q~pd--Vlatcsvdt~vh~wd~rSp~~p~------------------------ys~ 154 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQHPD--VLATCSVDTYVHAWDMRSPHRPF------------------------YST 154 (1081)
T ss_pred CCccceEEEEecCccceeccccCCCCCc--ceeeccccccceeeeccCCCcce------------------------eee
Confidence 3445567899999999999999875 79999999999999998654211 011
Q ss_pred CCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccc
Q 048801 394 GLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 394 ~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
..-......++|+-....+.+.+....|.+||.+.+. .++..+++|...|+.+.|..-.
T Consensus 155 ~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs--------~pl~s~K~~vs~vn~~~fnr~~------------- 213 (1081)
T KOG0309|consen 155 SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS--------TPLCSLKGHVSSVNSIDFNRFK------------- 213 (1081)
T ss_pred ecccccCceeeecccCcchhhhccCCceEEEeccCCC--------cceEEecccceeeehHHHhhhh-------------
Confidence 1112335678888744445555567889999998763 4577888899999999887532
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW 553 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf 553 (1715)
...+.+++.||+|+.||...... .|. .......+|..-.+
T Consensus 214 ------------~s~~~s~~~d~tvkfw~y~kSt~-----e~~-----------------------~~vtt~~piw~~r~ 253 (1081)
T KOG0309|consen 214 ------------YSEIMSSSNDGTVKFWDYSKSTT-----ESK-----------------------RTVTTNFPIWRGRY 253 (1081)
T ss_pred ------------hhhhcccCCCCceeeeccccccc-----ccc-----------------------eeccccCcceeccc
Confidence 46899999999999999874221 111 01111222333333
Q ss_pred CCCCC-----------EEEEEecCCeEEEEECCC-CceEEEEecCCCCeEEEEEccC---------CCcEEEEEeCCCcE
Q 048801 554 SLDNR-----------FVLAAIMDCRICVWNAVD-GSLVHSLTGHSASSYVLDVHPF---------NPRIAMSAGYDGRT 612 (1715)
Q Consensus 554 SPDG~-----------~LaTgs~DGtI~IWDl~s-g~~l~tL~gH~~~V~sLafSP~---------dg~lLaSgs~DGtI 612 (1715)
-|-|. .+..---+.....|+..+ .+++++|.||...|....|-.. ....|+|-+.|.++
T Consensus 254 ~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~l 333 (1081)
T KOG0309|consen 254 LPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTL 333 (1081)
T ss_pred cccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCce
Confidence 33222 111111223334555544 4689999999998876665321 12478999999999
Q ss_pred EEEECCC
Q 048801 613 IVWDIWE 619 (1715)
Q Consensus 613 ~VWDl~t 619 (1715)
++|-+.+
T Consensus 334 rlWpI~~ 340 (1081)
T KOG0309|consen 334 RLWPIDS 340 (1081)
T ss_pred EeeeccH
Confidence 9998854
|
|
| >cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.1e-09 Score=103.25 Aligned_cols=70 Identities=16% Similarity=0.348 Sum_probs=66.7
Q ss_pred hhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHhhc
Q 048801 1644 QKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1644 ~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
..++|...+..||||+||++||+++-|.++.+++.|+++|++||++||.++ .+..+|..|++.|.+.+..
T Consensus 29 ~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~-~~~~~a~~L~~~Fek~~~~ 98 (102)
T cd05501 29 YIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD-DFGQVGITLEKKFEKNFKE 98 (102)
T ss_pred CCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999999999999999999999 9999999999999988754
|
The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-07 Score=108.57 Aligned_cols=273 Identities=19% Similarity=0.252 Sum_probs=167.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----EEEEecCCC------------CCeEEEEECCCCC--EEEE
Q 048801 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF-----CLASCRGHE------------GDITDLAVSSNNT--LVAS 302 (1715)
Q Consensus 242 H~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk-----~l~tL~gHs------------~~VtsLafSpDg~--lLAS 302 (1715)
..+-|.+|.|..+|.+||||..+|.|.++.-.... ....++.|. ..|..+.|.++++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 34678999999999999999999999999643222 333444553 4688899988653 5666
Q ss_pred EeCCCeeEEEECCCCC-----------------------------------ceEEE-eCCCCCeEEEEecCCCCcceEEE
Q 048801 303 ASNDFVIRVWRLPDGL-----------------------------------PISVL-RGHTGAVTAIAFSPRPSAIYQLL 346 (1715)
Q Consensus 303 GS~DGtIrVWDl~tg~-----------------------------------~l~~L-~gH~~~VtsLafSPdg~~~~~La 346 (1715)
.+.|.+|++|.+.... +.+++ .+|+.-|++|.++.|.. .++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E---t~l 180 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE---TFL 180 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc---eEe
Confidence 7789999999874311 00111 25788899999999886 555
Q ss_pred EecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC-CCeEEEecCCCeEEEEe
Q 048801 347 SSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN-GTVFVTGSSDTFARVWS 425 (1715)
Q Consensus 347 SgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd-G~~LatGs~DG~IrVWD 425 (1715)
+ ..|-.|-+|++.-......+.--+|... ..-..-|++..|+|. .++|+-.++.|+|++-|
T Consensus 181 S-ADdLRINLWnlei~d~sFnIVDIKP~nm-----------------EeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 181 S-ADDLRINLWNLEIIDQSFNIVDIKPANM-----------------EELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred e-ccceeeeeccccccCCceeEEEccccCH-----------------HHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 5 4577899999864433222221111100 001234788899995 47888888999999999
Q ss_pred CCCCCccCCCCC-------ceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeE
Q 048801 426 ACKSSVEDSEQP-------IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSA 498 (1715)
Q Consensus 426 l~t~~~~~~~~~-------~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsI 498 (1715)
++...+...... ......+..--..|..+.|+++| .++++- .=-+|
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG--------------------------ryilsR-Dyltv 295 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG--------------------------RYILSR-DYLTV 295 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC--------------------------cEEEEe-cccee
Confidence 985543211110 01111223334567788888876 455543 33689
Q ss_pred EEEecCCCc-cCcccccccccccccCCCCCCCCCCCCCCCcccccCCC--CCeeEEEeCCCCCEEEEEecCCeEEEEECC
Q 048801 499 IIWIPRSRR-SHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP--RGVNMIVWSLDNRFVLAAIMDCRICVWNAV 575 (1715)
Q Consensus 499 rIWDl~t~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~--~~VtslafSPDG~~LaTgs~DGtI~IWDl~ 575 (1715)
++||+.... .+..... ..... ..+..+.... ..-..++|+.++.+++||+....++++++.
T Consensus 296 k~wD~nme~~pv~t~~v-h~~lr---------------~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 296 KLWDLNMEAKPVETYPV-HEYLR---------------SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred EEEeccccCCcceEEee-hHhHH---------------HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence 999985322 1111000 00000 0000000000 112357899999999999999999999976
Q ss_pred CCc
Q 048801 576 DGS 578 (1715)
Q Consensus 576 sg~ 578 (1715)
.|.
T Consensus 360 ~gs 362 (433)
T KOG1354|consen 360 RGS 362 (433)
T ss_pred CCc
Confidence 654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.1e-07 Score=106.60 Aligned_cols=288 Identities=14% Similarity=0.161 Sum_probs=174.2
Q ss_pred eEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecC-----------CCcEEE
Q 048801 288 ITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD-----------DGTCRI 356 (1715)
Q Consensus 288 VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~-----------DGtVrI 356 (1715)
-+-+.|||-|.||+|--..| |.+|--.+...++.+. |. .|.-+.|||..+ ||++-+. ...|+|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~Ek---YLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEK---YLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccc---eEEEecCCccccCcccCCCceEEE
Confidence 45689999999999987765 8899876666666665 54 488999999988 8887653 257999
Q ss_pred EecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCC
Q 048801 357 WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQ 436 (1715)
Q Consensus 357 WDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~ 436 (1715)
||+.+|.....+...... ...-.-+.||.|++++|.-.. ..|.||+..+-.
T Consensus 287 WDI~tG~lkrsF~~~~~~----------------------~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~------ 337 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSP----------------------YLKWPIFRWSHDDKYFARMTG-NSISIYETPSFM------ 337 (698)
T ss_pred EEccccchhcceeccCCC----------------------ccccceEEeccCCceeEEecc-ceEEEEecCcee------
Confidence 999999987766543211 111235789999999998776 568899876521
Q ss_pred CceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccc
Q 048801 437 PIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWT 516 (1715)
Q Consensus 437 ~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~ 516 (1715)
++..-.-.-..|....|+|.+ .. |..|-..+......++.
T Consensus 338 ---lld~Kslki~gIr~FswsP~~--------------------------~l---------lAYwtpe~~~~parvtL-- 377 (698)
T KOG2314|consen 338 ---LLDKKSLKISGIRDFSWSPTS--------------------------NL---------LAYWTPETNNIPARVTL-- 377 (698)
T ss_pred ---eecccccCCccccCcccCCCc--------------------------ce---------EEEEcccccCCcceEEE--
Confidence 111111223456777788753 22 22343332211111000
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec----------CCeEEEEECCCCceEEEEecC
Q 048801 517 RAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM----------DCRICVWNAVDGSLVHSLTGH 586 (1715)
Q Consensus 517 ~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~----------DGtI~IWDl~sg~~l~tL~gH 586 (1715)
.+.+....+....-+.-.=..+-|-.+|.+|+.--. -..+-|+.++..........-
T Consensus 378 -------------~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel 444 (698)
T KOG2314|consen 378 -------------MEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL 444 (698)
T ss_pred -------------EecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec
Confidence 000011111111111111223567778888875321 123455555443332222234
Q ss_pred CCCeEEEEEccCCCcEEEEEeCC--CcEEEEECCC----CceEEEEEcccceEEEEEEcCCCCEEEEE---eCCCeEEEE
Q 048801 587 SASSYVLDVHPFNPRIAMSAGYD--GRTIVWDIWE----GTPIRIYEIGRFKLVDGKFSPDGTSIVLS---DDVGQIYLL 657 (1715)
Q Consensus 587 ~~~V~sLafSP~dg~lLaSgs~D--GtI~VWDl~t----gk~l~tl~~h~~~V~svafSPDG~~LAsg---s~DG~I~IW 657 (1715)
...|...+|-|.+.++.+..+.+ .++.+|.+.+ .+++..+. ......+.|+|.|++++++ +..|.+.++
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEE
Confidence 56788999999777776665544 4788888763 23445554 3456789999999999876 557899999
Q ss_pred ECCCCccc
Q 048801 658 NTGQGESQ 665 (1715)
Q Consensus 658 dl~tGe~~ 665 (1715)
|+.-..++
T Consensus 523 D~~~a~~k 530 (698)
T KOG2314|consen 523 DTDYADLK 530 (698)
T ss_pred ecchhhhh
Confidence 98753333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.6e-07 Score=112.91 Aligned_cols=291 Identities=14% Similarity=0.174 Sum_probs=195.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC---------------ceEEEeCCCCCeEEEEecCCCCcceEEEEec
Q 048801 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL---------------PISVLRGHTGAVTAIAFSPRPSAIYQLLSSS 349 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~---------------~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS 349 (1715)
.....|++|+....++|+|+.||.++|..+.+.. .-+++.||.+.|.-+.|..... .|-+..
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q---KLTtSD 90 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ---KLTTSD 90 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc---cccccC
Confidence 4567899999999999999999999999876531 1246789999999999998876 788999
Q ss_pred CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCC
Q 048801 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~ 429 (1715)
.+|.|.+|-+-.|.....+.- ......|.+++|+.+|..++....||.|.|=.+...
T Consensus 91 t~GlIiVWmlykgsW~EEMiN-----------------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN 147 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMIN-----------------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN 147 (1189)
T ss_pred CCceEEEEeeecccHHHHHhh-----------------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc
Confidence 999999999877765433211 112445899999999999999999999887766544
Q ss_pred CccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccC
Q 048801 430 SVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 509 (1715)
Q Consensus 430 ~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~ 509 (1715)
.+.. + .+.+ .....+.|+++. ..++.+-..|.+.++|....
T Consensus 148 RIwg-----K---eLkg--~~l~hv~ws~D~--------------------------~~~Lf~~ange~hlydnqgn--- 188 (1189)
T KOG2041|consen 148 RIWG-----K---ELKG--QLLAHVLWSEDL--------------------------EQALFKKANGETHLYDNQGN--- 188 (1189)
T ss_pred eecc-----h---hcch--heccceeecccH--------------------------HHHHhhhcCCcEEEeccccc---
Confidence 3211 1 1111 123357788875 45555666788888886532
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe--------CCCCCEEEEEecCCeEEEEECCC-CceE
Q 048801 510 GKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW--------SLDNRFVLAAIMDCRICVWNAVD-GSLV 580 (1715)
Q Consensus 510 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf--------SPDG~~LaTgs~DGtI~IWDl~s-g~~l 580 (1715)
+............. + .+...+..|..+.| -||...|+++-.+|.+.|..-.+ ..++
T Consensus 189 -----F~~Kl~~~c~Vn~t------g----~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv 253 (1189)
T KOG2041|consen 189 -----FERKLEKDCEVNGT------G----IFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV 253 (1189)
T ss_pred -----HHHhhhhceEEeee------e----eecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe
Confidence 11111111000000 0 00011112333333 35788899999999988865433 3333
Q ss_pred EEEecCCCCeEEEEEccCCCcEEEEEeCC---------CcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCC
Q 048801 581 HSLTGHSASSYVLDVHPFNPRIAMSAGYD---------GRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDV 651 (1715)
Q Consensus 581 ~tL~gH~~~V~sLafSP~dg~lLaSgs~D---------GtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~D 651 (1715)
..-.| -.|....|++ +|.+|+.+|.+ +.|.++.. -|..+.+++.....|+.++|--.|-.+|.+- |
T Consensus 254 v~dtg--m~~vgakWnh-~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-d 328 (1189)
T KOG2041|consen 254 VVDTG--MKIVGAKWNH-NGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-D 328 (1189)
T ss_pred EEecc--cEeecceecC-CCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEe-c
Confidence 32222 5577889999 77888887753 25666653 6888999998888899999998888877654 4
Q ss_pred CeEEEEECC
Q 048801 652 GQIYLLNTG 660 (1715)
Q Consensus 652 G~I~IWdl~ 660 (1715)
+.|++=++.
T Consensus 329 sfiyfanIR 337 (1189)
T KOG2041|consen 329 SFIYFANIR 337 (1189)
T ss_pred ceEEEEeec
Confidence 777776653
|
|
| >cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
Probab=98.83 E-value=7e-09 Score=104.31 Aligned_cols=95 Identities=21% Similarity=0.360 Sum_probs=81.7
Q ss_pred HHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCC
Q 048801 1615 KLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKN 1694 (1715)
Q Consensus 1615 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~ 1694 (1715)
.|+..+...... ...+.+..|..+-.-...++|...+..||+++||+++|++.-|.+++++..|+++|++||..||.++
T Consensus 9 ~i~~~i~~~kd~-~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~yn~~~ 87 (106)
T cd05525 9 EICDAIITYKDS-NGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGRK 87 (106)
T ss_pred HHHHHHHHhhcc-CCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 344444443222 3445677888888888899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHH
Q 048801 1695 AALSAKVERLRDWFNR 1710 (1715)
Q Consensus 1695 ~~i~~~~~~l~~~~~~ 1710 (1715)
+.|...|+.|.+.|.+
T Consensus 88 S~i~~~A~~L~~~f~~ 103 (106)
T cd05525 88 SPIGRDVCRLRKAYYQ 103 (106)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999999986
|
ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-07 Score=114.66 Aligned_cols=169 Identities=14% Similarity=0.133 Sum_probs=136.0
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCcEEEEecC---CCCCeEEEEE------C--------------CCCCEEEEEeCCCe
Q 048801 252 DRSGRFVITGSDDRLVKIWSMETAFCLASCRG---HEGDITDLAV------S--------------SNNTLVASASNDFV 308 (1715)
Q Consensus 252 SpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~g---Hs~~VtsLaf------S--------------pDg~lLASGS~DGt 308 (1715)
.|-+.|+|....||.++||++.+++....+.. -++..++..| + .|...||-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 34567899999999999999999887766542 2333444444 1 23456788888999
Q ss_pred eEEEECCCCCceEEEe--CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 309 IRVWRLPDGLPISVLR--GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 309 IrVWDl~tg~~l~~L~--gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
|.+|++..|+....+. +|.+.|+++.++.+-. +|.+++.|+.+..|+......++....
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~---ciyS~~ad~~v~~~~~~~~~~~~~~~~---------------- 142 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG---CIYSVGADLKVVYILEKEKVIIRIWKE---------------- 142 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccC---ceEecCCceeEEEEecccceeeeeecc----------------
Confidence 9999999999888876 6999999999998876 899999999999999988776554432
Q ss_pred CCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccC
Q 048801 387 NGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGC 459 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspd 459 (1715)
....+.+++++|||..+++|+ +.|.+||+.+. +.+..+.||.++|++++|...
T Consensus 143 ---------~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k---------evv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 143 ---------QKPLVSSLCISPDGKILLTAS--RQIKVLDIETK---------EVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred ---------CCCccceEEEcCCCCEEEecc--ceEEEEEccCc---------eEEEEecCCCcceEEEEEEEe
Confidence 233478999999999999987 79999999885 458899999999999999764
|
|
| >cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.2e-09 Score=105.06 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=70.6
Q ss_pred hhhhhHHHHHHh--hhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 048801 1632 DYYGIQRLNEAA--QKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFN 1709 (1715)
Q Consensus 1632 ~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~ 1709 (1715)
....|..+++.. ..++|...+..|+|++||+.||+++.|+++.++..|+++|++||.+||.+++.|..+|+.|.+.|.
T Consensus 17 ~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~i~~~a~~l~~~fe 96 (99)
T cd05506 17 WGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPGNDVHTMAKELLKIFE 96 (99)
T ss_pred CCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 344555555433 468899999999999999999999999999999999999999999999999999999999999987
Q ss_pred HH
Q 048801 1710 RT 1711 (1715)
Q Consensus 1710 ~~ 1711 (1715)
+.
T Consensus 97 ~~ 98 (99)
T cd05506 97 TR 98 (99)
T ss_pred Hh
Confidence 53
|
Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.1e-07 Score=102.12 Aligned_cols=277 Identities=16% Similarity=0.129 Sum_probs=179.3
Q ss_pred CCeeEEEECCCCCceE--EE-eCCCCCeEEEEecCC--CCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCc
Q 048801 306 DFVIRVWRLPDGLPIS--VL-RGHTGAVTAIAFSPR--PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGK 380 (1715)
Q Consensus 306 DGtIrVWDl~tg~~l~--~L-~gH~~~VtsLafSPd--g~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~ 380 (1715)
.|.+.+|++.+.+.+. ++ ...+..+..+.|+-. +.. ..|+-+-.+|.|.++..........+. .+
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~-~~l~~a~a~G~i~~~r~~~~~ss~~L~------~l--- 114 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGD-FNLLDAHARGQIQLYRNDEDESSVHLR------GL--- 114 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCcc-ceeeeccccceEEEEeeccceeeeeec------cc---
Confidence 3678888887654432 11 223455677777632 222 256777788889888764332211110 00
Q ss_pred cCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCc
Q 048801 381 SNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg 460 (1715)
...........++.|++.|..++++..+|.+.+-+..... ...++..+.|.-.+.-..|+...
T Consensus 115 ----------s~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~-------le~vq~wk~He~E~Wta~f~~~~ 177 (339)
T KOG0280|consen 115 ----------SSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMV-------LEKVQTWKVHEFEAWTAKFSDKE 177 (339)
T ss_pred ----------chhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceee-------eeecccccccceeeeeeecccCC
Confidence 0000011135788899999999999999999865554322 34455788899888888887643
Q ss_pred ccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
++.+.+|+.||.+..||++... ......
T Consensus 178 -------------------------pnlvytGgDD~~l~~~D~R~p~---------------------------~~i~~n 205 (339)
T KOG0280|consen 178 -------------------------PNLVYTGGDDGSLSCWDIRIPK---------------------------TFIWHN 205 (339)
T ss_pred -------------------------CceEEecCCCceEEEEEecCCc---------------------------ceeeec
Confidence 4789999999999999998311 001112
Q ss_pred ccCCCCCeeEEEeCC-CCCEEEEEecCCeEEEEECCC-CceEEEEecCCCCeEEEEEccCCCc-EEEEEeCCCcEEEEEC
Q 048801 541 LLPTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAVD-GSLVHSLTGHSASSYVLDVHPFNPR-IAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 541 l~~h~~~VtslafSP-DG~~LaTgs~DGtI~IWDl~s-g~~l~tL~gH~~~V~sLafSP~dg~-lLaSgs~DGtI~VWDl 617 (1715)
...|..+|.+|.-+| .+.+|+||+.|-.|++||.++ ++++..-. -.+.|+.+.++|.... +|+++-..| ++|-++
T Consensus 206 ~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~ 283 (339)
T KOG0280|consen 206 SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDS 283 (339)
T ss_pred ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEe
Confidence 345777898888875 688999999999999999984 56655433 3478999999996554 444554555 777776
Q ss_pred CCC--c---eEEEEEcccceEEEEEEcCCCCEEEEE-eCCCeEE-EEECCCCc
Q 048801 618 WEG--T---PIRIYEIGRFKLVDGKFSPDGTSIVLS-DDVGQIY-LLNTGQGE 663 (1715)
Q Consensus 618 ~tg--k---~l~tl~~h~~~V~svafSPDG~~LAsg-s~DG~I~-IWdl~tGe 663 (1715)
..+ + .+.....|.+-+....|..-...||++ ..|..|+ +|-..+++
T Consensus 284 ~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 284 SDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred cccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 553 3 344455566666777775545567775 4566644 77766664
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.1e-07 Score=106.89 Aligned_cols=254 Identities=18% Similarity=0.266 Sum_probs=180.3
Q ss_pred CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEe-cCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC
Q 048801 318 LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD-ARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396 (1715)
Q Consensus 318 ~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWD-l~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h 396 (1715)
..+..+.||...|+....-|... -+++.+.|.+++||- .+.++.-+.+.. ..
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~---gv~~~s~drtvrv~lkrds~q~wpsI~~------------------------~m 67 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEE---GVISVSEDRTVRVWLKRDSGQYWPSIYH------------------------YM 67 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCC---CeEEccccceeeeEEeccccccCchhhh------------------------hC
Confidence 34567789999999888888766 689999999999994 333443333322 12
Q ss_pred CcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccc
Q 048801 397 SHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476 (1715)
Q Consensus 397 ~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~ 476 (1715)
...++++.+.++...|++|-..|++.-+.+... ......++....|...|..+.|+-.
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed-----fnkm~~~r~~~~h~~~v~~~if~~~----------------- 125 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSED-----FNKMTFLKDYLAHQARVSAIVFSLT----------------- 125 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhh-----hhhcchhhhhhhhhcceeeEEecCC-----------------
Confidence 445889999999999999999999998877531 2223345667789999999999754
Q ss_pred ccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC
Q 048801 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD 556 (1715)
Q Consensus 477 ~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD 556 (1715)
+..+++.+.|..+.---.+++..++.. .+... -+++.+.-.
T Consensus 126 ---------~e~V~s~~~dk~~~~hc~e~~~~lg~Y-------~~~~~-----------------------~t~~~~d~~ 166 (404)
T KOG1409|consen 126 ---------HEWVLSTGKDKQFAWHCTESGNRLGGY-------NFETP-----------------------ASALQFDAL 166 (404)
T ss_pred ---------ceeEEEeccccceEEEeeccCCcccce-------Eeecc-----------------------CCCCceeeE
Confidence 378899998887765444433222111 00000 001111111
Q ss_pred CCEEEEEecCCeEEEEEC--CCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce-EEEEEcccceE
Q 048801 557 NRFVLAAIMDCRICVWNA--VDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTP-IRIYEIGRFKL 633 (1715)
Q Consensus 557 G~~LaTgs~DGtI~IWDl--~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~-l~tl~~h~~~V 633 (1715)
+...|...|.|.+-.+ ....++.++.+|.+.++++.|.+ ..++|.+|..|..|.+||+--.+- ...+.+|...|
T Consensus 167 --~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV 243 (404)
T KOG1409|consen 167 --YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKV 243 (404)
T ss_pred --EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhh
Confidence 4445555555554433 45667889999999999999999 788999999999999999965433 34556788889
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 634 VDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 634 ~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
..+..-+--+.|++++.||.|.+|++...
T Consensus 244 ~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 244 QALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 88888888899999999999999998654
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.7e-06 Score=101.48 Aligned_cols=310 Identities=13% Similarity=0.065 Sum_probs=182.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCC----------CeE-EEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEG----------DIT-DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~----------~Vt-sLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L 323 (1715)
+..|++++.+|.|.-+|..+|+.+-...-... .+. .++. ++..|+.++.+|.+..+|..+|+.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 55777788889999999999988776542210 000 1111 3556778888999999999999988877
Q ss_pred eCCCCCeEE-EEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeE
Q 048801 324 RGHTGAVTA-IAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILC 402 (1715)
Q Consensus 324 ~gH~~~Vts-LafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vts 402 (1715)
.... .+.+ ..+. ++ .++.++.+|.|..+|..+|+.+.......+.... .....++
T Consensus 147 ~~~~-~~~ssP~v~-~~----~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~----------------~~~~sP~-- 202 (394)
T PRK11138 147 KVAG-EALSRPVVS-DG----LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL----------------RGESAPA-- 202 (394)
T ss_pred cCCC-ceecCCEEE-CC----EEEEECCCCEEEEEEccCCCEeeeecCCCCcccc----------------cCCCCCE--
Confidence 6432 2222 2222 22 5777888999999999999877665432110000 0001111
Q ss_pred EEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCC-CCeeEEEEccCcccccccccccccccccccccC
Q 048801 403 CAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE-NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 403 lafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~-~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
.. ++ .++.++.+|.+..+|..+++.......... ...+. .....+..+|
T Consensus 203 --v~-~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~---~~~~~~~~~~~~~~sP----------------------- 252 (394)
T PRK11138 203 --TA-FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQP---TGATEIDRLVDVDTTP----------------------- 252 (394)
T ss_pred --EE-CC-EEEEEcCCCEEEEEEccCChhhheeccccC---CCccchhcccccCCCc-----------------------
Confidence 11 23 456677788888888887653211100000 00000 0000000011
Q ss_pred CcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La 561 (1715)
....+.++.++.+|.+..+|+.+++.. |...+. ....+. ..+..|+
T Consensus 253 -~v~~~~vy~~~~~g~l~ald~~tG~~~-----W~~~~~--------------------------~~~~~~--~~~~~vy 298 (394)
T PRK11138 253 -VVVGGVVYALAYNGNLVALDLRSGQIV-----WKREYG--------------------------SVNDFA--VDGGRIY 298 (394)
T ss_pred -EEECCEEEEEEcCCeEEEEECCCCCEE-----EeecCC--------------------------CccCcE--EECCEEE
Confidence 011356777788999999999886532 321110 000111 2456777
Q ss_pred EEecCCeEEEEECCCCceEEEEecCC-CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEE-EEEc
Q 048801 562 AAIMDCRICVWNAVDGSLVHSLTGHS-ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVD-GKFS 639 (1715)
Q Consensus 562 Tgs~DGtI~IWDl~sg~~l~tL~gH~-~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~s-vafS 639 (1715)
+++.+|.|..+|..+|+.+.....-. ....+..+. ++ .|+.++.||.|.+.|..+|+.+.........+.. ..+
T Consensus 299 ~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g-~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~- 374 (394)
T PRK11138 299 LVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NG-YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV- 374 (394)
T ss_pred EEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CC-EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-
Confidence 78889999999999998876543211 112222231 33 4567889999999999999999888754333332 222
Q ss_pred CCCCEEEEEeCCCeEEEEEC
Q 048801 640 PDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 640 PDG~~LAsgs~DG~I~IWdl 659 (1715)
.+..|++++.+|.|+.++.
T Consensus 375 -~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 375 -ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred -ECCEEEEEeCCceEEEEeC
Confidence 2457888999999998874
|
|
| >cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-08 Score=101.99 Aligned_cols=96 Identities=17% Similarity=0.267 Sum_probs=84.2
Q ss_pred HHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCC
Q 048801 1614 DKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIK 1693 (1715)
Q Consensus 1614 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~ 1693 (1715)
++++..+.++... ...+-+..|..+.+....++|...+..||++++|++||+++.|.++.++..|+++|++||..||.+
T Consensus 7 ~~i~~~v~~~~d~-~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~ 85 (104)
T cd05522 7 KNILKGLRKERDE-NGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNEN 85 (104)
T ss_pred HHHHHHHHHHhCc-CCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4567777776554 235566677777777788999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHH
Q 048801 1694 NAALSAKVERLRDWFNR 1710 (1715)
Q Consensus 1694 ~~~i~~~~~~l~~~~~~ 1710 (1715)
++.|...|..|.+.|.+
T Consensus 86 ~s~i~~~A~~l~~~f~~ 102 (104)
T cd05522 86 DSQEYKDAVLLEKEARL 102 (104)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999999975
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.6e-08 Score=130.34 Aligned_cols=225 Identities=12% Similarity=0.219 Sum_probs=165.3
Q ss_pred CEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCc
Q 048801 298 TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAI 377 (1715)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i 377 (1715)
+.+.....++...-|..+-+. ..+..+-..|.++.-+|... +.++|+.||.|++|....++.+......
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~--~~~k~~v~~v~r~~sHp~~~---~Yltgs~dgsv~~~~w~~~~~v~~~rt~------ 2249 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGAS--VMIKHPVENVRRMTSHPSDP---YYLTGSQDGSVRMFEWGHGQQVVCFRTA------ 2249 (2439)
T ss_pred ccCCcccCCccccceecccce--eEeecccCceeeecCCCCCc---eEEecCCCceEEEEeccCCCeEEEeecc------
Confidence 344444445555555543222 12333556788888888776 7899999999999999887765544321
Q ss_pred cCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEc
Q 048801 378 TGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS 457 (1715)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafs 457 (1715)
....|+.+.|+.+|+.+..+..||.+.+|.+.. ++......|......+.|.
T Consensus 2250 ------------------g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p----------k~~~s~qchnk~~~Df~Fi 2301 (2439)
T KOG1064|consen 2250 ------------------GNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP----------KPYTSWQCHNKALSDFRFI 2301 (2439)
T ss_pred ------------------CcchhhhhhhcccCCceeeeccCCceeecccCC----------cceeccccCCccccceeee
Confidence 125688999999999999999999999999862 3455566777777777776
Q ss_pred cCcccccccccccccccccccccCCcccCceEEEEc---CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 458 GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS---RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 458 pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS---~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
.. .+++.+ .++.+.+||.--.. .
T Consensus 2302 ~s----------------------------~~~tag~s~d~~n~~lwDtl~~~--------------------------~ 2327 (2439)
T KOG1064|consen 2302 GS----------------------------LLATAGRSSDNRNVCLWDTLLPP--------------------------M 2327 (2439)
T ss_pred eh----------------------------hhhccccCCCCCcccchhcccCc--------------------------c
Confidence 53 344443 56789999864200 0
Q ss_pred CCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEE
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIV 614 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~V 614 (1715)
...+ ...|.++++++++-|..++|++|+.+|.|+|||++..++++++.. ++ ...++++|+..|.|+|
T Consensus 2328 ~s~v--~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~--~~~~f~~~ss~g~ikI 2394 (2439)
T KOG1064|consen 2328 NSLV--HTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD--TREYFVTGSSEGNIKI 2394 (2439)
T ss_pred ccee--eeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh--hhheeeccCcccceEE
Confidence 1111 167899999999999999999999999999999999888887764 32 3568889999999999
Q ss_pred EECCCCceEEEEEc
Q 048801 615 WDIWEGTPIRIYEI 628 (1715)
Q Consensus 615 WDl~tgk~l~tl~~ 628 (1715)
|++.....+.++..
T Consensus 2395 w~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2395 WRLSEFGLLHTFPS 2408 (2439)
T ss_pred EEccccchhhcCch
Confidence 99998888877764
|
|
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-08 Score=132.27 Aligned_cols=102 Identities=18% Similarity=0.259 Sum_probs=81.5
Q ss_pred ChHHHHHHhhhHHHhhhhccccchhhhhHHHHH--HhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q 048801 1609 DSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNE--AAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSN 1686 (1715)
Q Consensus 1609 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~N 1686 (1715)
....-+.++..|.+|... .....|..+++ .|.=|||...+.-||||+|||.||++.+|+....+..|||+||.|
T Consensus 220 ~~~~lk~C~~iLk~l~~~----k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~N 295 (640)
T KOG1474|consen 220 TVELLKQCLSILKRLMKH----KHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDN 295 (640)
T ss_pred cHHHHHHHHHHHHHHHhc----cCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHH
Confidence 334444455555555543 22244444443 344589999999999999999999999999999999999999999
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHHhhc
Q 048801 1687 AESYFIKNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1687 a~~~n~~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
|++||.+++++..||+.|.+.|......
T Consensus 296 cm~YNp~g~dV~~Ma~~L~~~Fe~rw~~ 323 (640)
T KOG1474|consen 296 CMTYNPEGSDVYAMAKKLQEVFEERWAS 323 (640)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999987665
|
|
| >cd04369 Bromodomain Bromodomain | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.5e-08 Score=98.52 Aligned_cols=81 Identities=21% Similarity=0.323 Sum_probs=73.8
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNR 1710 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~ 1710 (1715)
..+..|..+......++|...+..|+++.+|+.||++++|.+++++..|++.|+.||..||.+++.+..+|+.|.+.|.+
T Consensus 18 ~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~~~~~~~a~~l~~~~~~ 97 (99)
T cd04369 18 DLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEK 97 (99)
T ss_pred cccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 44555666666677889999999999999999999999999999999999999999999999999999999999999876
Q ss_pred H
Q 048801 1711 T 1711 (1715)
Q Consensus 1711 ~ 1711 (1715)
.
T Consensus 98 ~ 98 (99)
T cd04369 98 L 98 (99)
T ss_pred h
Confidence 5
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-07 Score=125.18 Aligned_cols=221 Identities=12% Similarity=0.225 Sum_probs=160.5
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe-CCCCCeEEEEec
Q 048801 258 VITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR-GHTGAVTAIAFS 336 (1715)
Q Consensus 258 LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~-gH~~~VtsLafS 336 (1715)
......+++..-|..+.+.. .++.+-..|.++.-+|...+.+||+.||.|++|....+..+..++ .....|+.+.|+
T Consensus 2183 ~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~ 2260 (2439)
T KOG1064|consen 2183 FTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFN 2260 (2439)
T ss_pred CCcccCCccccceeccccee--EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhc
Confidence 33334455555555443222 234456678889889999999999999999999999998888775 233889999999
Q ss_pred CCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec
Q 048801 337 PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS 416 (1715)
Q Consensus 337 Pdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs 416 (1715)
.+|+ .+..+..||.+.+|.+... +......|......+.|-. ..+++++
T Consensus 2261 ~qGn---k~~i~d~dg~l~l~q~~pk--------------------------~~~s~qchnk~~~Df~Fi~--s~~~tag 2309 (2439)
T KOG1064|consen 2261 HQGN---KFGIVDGDGDLSLWQASPK--------------------------PYTSWQCHNKALSDFRFIG--SLLATAG 2309 (2439)
T ss_pred ccCC---ceeeeccCCceeecccCCc--------------------------ceeccccCCccccceeeee--hhhhccc
Confidence 9998 7888899999999987511 1112234555566677755 5566654
Q ss_pred ---CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEc
Q 048801 417 ---SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS 493 (1715)
Q Consensus 417 ---~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS 493 (1715)
.++.+.+||...... ...+. ..|.+.++++++.|.. ..|++|+
T Consensus 2310 ~s~d~~n~~lwDtl~~~~------~s~v~--~~H~~gaT~l~~~P~~--------------------------qllisgg 2355 (2439)
T KOG1064|consen 2310 RSSDNRNVCLWDTLLPPM------NSLVH--TCHDGGATVLAYAPKH--------------------------QLLISGG 2355 (2439)
T ss_pred cCCCCCcccchhcccCcc------cceee--eecCCCceEEEEcCcc--------------------------eEEEecC
Confidence 478899999854211 12233 7899999999999974 7999999
Q ss_pred CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEE
Q 048801 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 573 (1715)
Q Consensus 494 ~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWD 573 (1715)
.+|.|.+||++.++..... . ++. ...++++|+..|.|+||+
T Consensus 2356 r~G~v~l~D~rqrql~h~~-----------------------------~---------~~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTF-----------------------------Q---------ALD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred CcCcEEEeehHHHHHHHHh-----------------------------h---------hhh-hhheeeccCcccceEEEE
Confidence 9999999999865422211 0 033 456889999999999999
Q ss_pred CCCCceEEEEe
Q 048801 574 AVDGSLVHSLT 584 (1715)
Q Consensus 574 l~sg~~l~tL~ 584 (1715)
+....+++++.
T Consensus 2397 ~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2397 LSEFGLLHTFP 2407 (2439)
T ss_pred ccccchhhcCc
Confidence 99888877765
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.1e-05 Score=111.24 Aligned_cols=275 Identities=13% Similarity=0.136 Sum_probs=163.6
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEeCCCCcEEEEecC--C------------CCCeEEEEECCCCCEEEEEe-CCCeeEE
Q 048801 248 CAIFDRS-GRFVITGSDDRLVKIWSMETAFCLASCRG--H------------EGDITDLAVSSNNTLVASAS-NDFVIRV 311 (1715)
Q Consensus 248 ~VafSpD-G~~LaTGS~DGtIrIWDl~tgk~l~tL~g--H------------s~~VtsLafSpDg~lLASGS-~DGtIrV 311 (1715)
.++++++ |+++++-+.++.|.+||.. +..+..+.+ . -.....|++++++..|+++. ..+.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 5788874 5566776778999999976 444444332 1 12357899999888666654 4578999
Q ss_pred EECCCCCceEEEeCC-----------------CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCC
Q 048801 312 WRLPDGLPISVLRGH-----------------TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPP 374 (1715)
Q Consensus 312 WDl~tg~~l~~L~gH-----------------~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~ 374 (1715)
+|+.++. +.++.+- -...+.|+|+|++.. .+++.+.++.|++||..++... .+.-.
T Consensus 651 id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~--LyVad~~~~~I~v~d~~~g~v~-~~~G~--- 723 (1057)
T PLN02919 651 IDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK--VYIAMAGQHQIWEYNISDGVTR-VFSGD--- 723 (1057)
T ss_pred EecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe--EEEEECCCCeEEEEECCCCeEE-EEecC---
Confidence 9987654 4444211 112468999995542 5677788899999998776432 11100
Q ss_pred CCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeE
Q 048801 375 DAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNY 453 (1715)
Q Consensus 375 ~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~s 453 (1715)
|.... .... ......-.....++|+|+|. ++++.+.++.|++||+.++.. ..+.+ ...+
T Consensus 724 ----G~~~~--~~g~-~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~----------~~~~g-g~~~-- 783 (1057)
T PLN02919 724 ----GYERN--LNGS-SGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS----------RLLAG-GDPT-- 783 (1057)
T ss_pred ----Ccccc--CCCC-ccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE----------EEEEe-cccc--
Confidence 00000 0000 00011123457799999987 555666678999999865310 00000 0000
Q ss_pred EEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCC
Q 048801 454 VQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPP 533 (1715)
Q Consensus 454 Lafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 533 (1715)
+ +. ...-.+..||..
T Consensus 784 --~-~~---------------------------~l~~fG~~dG~g----------------------------------- 798 (1057)
T PLN02919 784 --F-SD---------------------------NLFKFGDHDGVG----------------------------------- 798 (1057)
T ss_pred --c-Cc---------------------------ccccccCCCCch-----------------------------------
Confidence 0 00 000001111100
Q ss_pred CCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe-------------cCCCCeEEEEEccCCC
Q 048801 534 RGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT-------------GHSASSYVLDVHPFNP 600 (1715)
Q Consensus 534 ~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~-------------gH~~~V~sLafSP~dg 600 (1715)
..... .....++++++|.++++-..+++|++||..++....... +.-.....|++++ ++
T Consensus 799 ----~~~~l---~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG 870 (1057)
T PLN02919 799 ----SEVLL---QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NG 870 (1057)
T ss_pred ----hhhhc---cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CC
Confidence 00001 123468999999998988999999999998876553321 1112467899999 66
Q ss_pred cEEEEEeCCCcEEEEECCCCceE
Q 048801 601 RIAMSAGYDGRTIVWDIWEGTPI 623 (1715)
Q Consensus 601 ~lLaSgs~DGtI~VWDl~tgk~l 623 (1715)
+++++-+.+++|++||+.+++..
T Consensus 871 ~lyVaDt~Nn~Irvid~~~~~~~ 893 (1057)
T PLN02919 871 RLFVADTNNSLIRYLDLNKGEAA 893 (1057)
T ss_pred CEEEEECCCCEEEEEECCCCccc
Confidence 88888889999999999988753
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-05 Score=111.08 Aligned_cols=279 Identities=14% Similarity=0.070 Sum_probs=159.9
Q ss_pred EEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC
Q 048801 331 TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT 410 (1715)
Q Consensus 331 tsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~ 410 (1715)
..+++.+.+.. ++++-+.++.|++||.. +..+..+...... |. ..+. .....-.....++++++++
T Consensus 571 ~gvavd~~~g~--lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~----G~-----~dG~--~~~a~f~~P~GIavd~~gn 636 (1057)
T PLN02919 571 GKLAIDLLNNR--LFISDSNHNRIVVTDLD-GNFIVQIGSTGEE----GL-----RDGS--FEDATFNRPQGLAYNAKKN 636 (1057)
T ss_pred ceEEEECCCCe--EEEEECCCCeEEEEeCC-CCEEEEEccCCCc----CC-----CCCc--hhccccCCCcEEEEeCCCC
Confidence 46788775442 56777788899999975 3332222110000 00 0000 0011223467899999887
Q ss_pred eEEEe-cCCCeEEEEeCCCCCccCCCCCceeeeeecCC-------CCCeeEEEEccCcccccccccccccccccccccCC
Q 048801 411 VFVTG-SSDTFARVWSACKSSVEDSEQPIHELDVLSGH-------ENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNS 482 (1715)
Q Consensus 411 ~LatG-s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH-------~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s 482 (1715)
.|.++ ..++.|+++|+.++.+..............+. -..-..++|++++
T Consensus 637 ~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~---------------------- 694 (1057)
T PLN02919 637 LLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVN---------------------- 694 (1057)
T ss_pred EEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCC----------------------
Confidence 55444 45678999998764321000000000000000 0122456776632
Q ss_pred cccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEE-E
Q 048801 483 WFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFV-L 561 (1715)
Q Consensus 483 ~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~L-a 561 (1715)
...+++.+.++.|++||..++......+.. +.. ...+.. .....-.....|+++|+|..| +
T Consensus 695 ---g~LyVad~~~~~I~v~d~~~g~v~~~~G~G---~~~----------~~~g~~--~~~~~~~~P~GIavspdG~~LYV 756 (1057)
T PLN02919 695 ---EKVYIAMAGQHQIWEYNISDGVTRVFSGDG---YER----------NLNGSS--GTSTSFAQPSGISLSPDLKELYI 756 (1057)
T ss_pred ---CeEEEEECCCCeEEEEECCCCeEEEEecCC---ccc----------cCCCCc--cccccccCccEEEEeCCCCEEEE
Confidence 357788888999999998765421110000 000 000000 000112346779999999855 4
Q ss_pred EEecCCeEEEEECCCCceEEEEec-------------C--------CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC
Q 048801 562 AAIMDCRICVWNAVDGSLVHSLTG-------------H--------SASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 562 Tgs~DGtI~IWDl~sg~~l~tL~g-------------H--------~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
+.+.++.|++||+.++.......+ + -....++++++ ++.++++-..+++|++||..++
T Consensus 757 ADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg 835 (1057)
T PLN02919 757 ADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATK 835 (1057)
T ss_pred EECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCC
Confidence 555678999999987653221110 0 11235788988 6678888889999999999887
Q ss_pred ceEEEEEcc-------------cceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Q 048801 621 TPIRIYEIG-------------RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGES 664 (1715)
Q Consensus 621 k~l~tl~~h-------------~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~ 664 (1715)
........+ -.....++++++|+++++-+.++.|++|++.+++.
T Consensus 836 ~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 836 RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred eEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 665433211 11356889999999888888899999999988764
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.8e-07 Score=104.25 Aligned_cols=321 Identities=18% Similarity=0.155 Sum_probs=203.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC--C-cEEEEecCCCCCeEEEEECCCCCEEEEEeC-CCeeEEEECCC
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET--A-FCLASCRGHEGDITDLAVSSNNTLVASASN-DFVIRVWRLPD 316 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~t--g-k~l~tL~gHs~~VtsLafSpDg~lLASGS~-DGtIrVWDl~t 316 (1715)
-|.+.|+.|..+. .+++++++.||.++.|.-.. | +.+..+..|.+.|.+++.+-++.+++|++. |..++++|+.+
T Consensus 7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 3888888887664 46999999999999997543 2 445567789999999999999999999888 99999999987
Q ss_pred CCceEEEeC--CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 317 GLPISVLRG--HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 317 g~~l~~L~g--H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
-..+..+.- -.+.+. +..++.......-++.-.+|.+.|+|-..+.+. ......
T Consensus 86 ~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q-----------------------~~~fkk 141 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ-----------------------DGYFKK 141 (558)
T ss_pred cchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCc-----------------------cceecc
Confidence 655533321 122222 222332221112334456788999986543321 223345
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCeEEEEeCCC------CCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccc
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSDTFARVWSACK------SSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t------~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~ 468 (1715)
.|..+|.++.+++-+..+++....|.|.-|.... .++.........+..+........++.|+|++
T Consensus 142 lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-------- 213 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-------- 213 (558)
T ss_pred cccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc--------
Confidence 6788899999999999999999999999999873 11111111111122223344567788899886
Q ss_pred ccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCC---CCcccccCCC
Q 048801 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRG---GPRQRLLPTP 545 (1715)
Q Consensus 469 ~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g---~~~~~l~~h~ 545 (1715)
..+.+-+.|..|+++++.+++....+.......+.....+-......-+ .....+..|.
T Consensus 214 ------------------~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~ 275 (558)
T KOG0882|consen 214 ------------------AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHG 275 (558)
T ss_pred ------------------CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhc
Confidence 6888888999999999999886654433222222111110000000000 0001112222
Q ss_pred -CCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCe--------------------------EEEEEccC
Q 048801 546 -RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASS--------------------------YVLDVHPF 598 (1715)
Q Consensus 546 -~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V--------------------------~sLafSP~ 598 (1715)
..-+.++|...|++|+-|+.=| |+|.++.++++++.+-... .| -.+.+.+
T Consensus 276 ~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e-~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~- 352 (558)
T KOG0882|consen 276 STVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDE-AIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQK- 352 (558)
T ss_pred CcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccch-hhhhhhHHHHhhhhhccchhhhhhhccCcccccCC-
Confidence 2345678999999999888765 8899999988877663111 11 1122444
Q ss_pred CCcEEEEEeCCCcEEEE
Q 048801 599 NPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 599 dg~lLaSgs~DGtI~VW 615 (1715)
|+.+++++-...+++++
T Consensus 353 dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 353 DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred CCeEEEeeeecceEEEE
Confidence 67788777777888887
|
|
| >cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.2e-08 Score=97.48 Aligned_cols=72 Identities=18% Similarity=0.111 Sum_probs=66.8
Q ss_pred hhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1644 QKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1644 ~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
..++|...+.-|||++||++||++.-|++++++..||++|++||.+||.+++.+...|+.|-.-..+-|+.|
T Consensus 35 ~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 35 KLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred cCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 468888999999999999999999999999999999999999999999999999999999988887776653
|
ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.5e-06 Score=98.38 Aligned_cols=285 Identities=11% Similarity=0.175 Sum_probs=172.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC-----ceEEEeCCC------------CCeEEEEecCCCCcceEEEE
Q 048801 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL-----PISVLRGHT------------GAVTAIAFSPRPSAIYQLLS 347 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~-----~l~~L~gH~------------~~VtsLafSPdg~~~~~LaS 347 (1715)
...|+++.|...|.||++|...|.|.++.-.... ....+++|. ..|..|.|..++... .++.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~-hFLl 104 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN-HFLL 104 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc-eEEE
Confidence 4579999999999999999999999999754322 223355554 357889998776544 6777
Q ss_pred ecCCCcEEEEecCCCCCc--c------eecCCCC--CCCcc----Ccc----CCCCCCCCCCCCCCCCcceeEEEEccCC
Q 048801 348 SSDDGTCRIWDARYSQYS--P------RIYLPKP--PDAIT----GKS----NVPSNNGPSSSNGLQSHQILCCAYNANG 409 (1715)
Q Consensus 348 gS~DGtVrIWDl~tg~~l--~------~i~~~~~--~~~i~----g~~----~~~~~~~~~~~~~~h~~~VtslafSpdG 409 (1715)
.+.|.+|++|.+....+. . .+..+.. ..... +.. ..............|...|.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 788999999998654211 1 0111100 00000 000 0000011122335678889999999999
Q ss_pred CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCC-----CCCeeEEEEccCcccccccccccccccccccccCCcc
Q 048801 410 TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGH-----ENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWF 484 (1715)
Q Consensus 410 ~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH-----~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~ 484 (1715)
..++++ .|-.|.+|++..... .. .+-.+..| +.-|++..|+|..
T Consensus 185 et~lSa-DdLrINLWnl~i~D~-----sF-nIVDiKP~nmeeLteVItSaeFhp~~------------------------ 233 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDG-----SF-NIVDIKPHNMEELTEVITSAEFHPEM------------------------ 233 (460)
T ss_pred heeeec-cceeeeeccccccCC-----ce-EEEeccCccHHHHHHHHhhcccCHhH------------------------
Confidence 888877 478899999864211 11 11122222 2356677777754
Q ss_pred cCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe
Q 048801 485 CHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI 564 (1715)
Q Consensus 485 ~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs 564 (1715)
-..+...+..|.|++-|++........ ...+.. ...+....-+......|..+.|+++|++|++-.
T Consensus 234 -cn~fmYSsSkG~Ikl~DlRq~alcdn~---~klfe~----------~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd 299 (460)
T COG5170 234 -CNVFMYSSSKGEIKLNDLRQSALCDNS---KKLFEL----------TIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD 299 (460)
T ss_pred -cceEEEecCCCcEEehhhhhhhhccCc---hhhhhh----------ccCcccchhHHHHhhhhcceEEcCCCcEEEEec
Confidence 267888899999999999853211100 001110 111111122233445688999999999999765
Q ss_pred cCCeEEEEECCC-CceEEEEecCC------------CCe---EEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 565 MDCRICVWNAVD-GSLVHSLTGHS------------ASS---YVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 565 ~DGtI~IWDl~s-g~~l~tL~gH~------------~~V---~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
. -+|+|||+.. ..++.++.-|. ..| .-+.|+- +...+++|++.+..-|+-.
T Consensus 300 y-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSg-d~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 300 Y-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSG-DDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred c-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecC-Ccccccccccccceeeecc
Confidence 4 5899999975 34666665442 222 3456776 4456668888877777653
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.4e-07 Score=108.89 Aligned_cols=290 Identities=16% Similarity=0.211 Sum_probs=185.0
Q ss_pred EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC-------CCceEEEeCCCCCeEEEEecCCCCcceEEEEecC
Q 048801 278 LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD-------GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD 350 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t-------g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~ 350 (1715)
+..+.||...|..++--.+.+-+++++.|++|++|.+.. ..+..+++.|..+|.++.|..+.. +++ +.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr---~i~--Sc 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR---SIA--SC 802 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc---eee--ec
Confidence 456789999999998877888899999999999999853 246677889999999999999876 444 45
Q ss_pred CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEe-cCCCeEEEEeCCCC
Q 048801 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG-SSDTFARVWSACKS 429 (1715)
Q Consensus 351 DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatG-s~DG~IrVWDl~t~ 429 (1715)
||.|.+||.--+..+..+.... ..+....|.|+. +-+..++++| +...+|+++|.+..
T Consensus 803 D~giHlWDPFigr~Laq~~dap--------------------k~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsc 861 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAP--------------------KEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSC 861 (1034)
T ss_pred cCcceeecccccchhHhhhcCc--------------------ccCCCceeEecc-cCcchheeeeccchhhheeeecccc
Confidence 8899999987666544321110 001122344442 1133444444 67889999999865
Q ss_pred CccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccC
Q 048801 430 SVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 509 (1715)
Q Consensus 430 ~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~ 509 (1715)
.... .-.+....+.+.-+.+++..+.| +.++.+-..|.|.+.|.+++..+
T Consensus 862 e~~~----E~kVcna~~Pna~~R~iaVa~~G--------------------------N~lAa~LSnGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 862 EWTC----ELKVCNAPGPNALTRAIAVADKG--------------------------NKLAAALSNGCIAILDARNGKVI 911 (1034)
T ss_pred ccee----eEEeccCCCCchheeEEEeccCc--------------------------chhhHHhcCCcEEEEecCCCcee
Confidence 3210 01122235566778899998876 78999999999999999987643
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEE-EECCCCceEEEEecCCC
Q 048801 510 GKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICV-WNAVDGSLVHSLTGHSA 588 (1715)
Q Consensus 510 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~I-WDl~sg~~l~tL~gH~~ 588 (1715)
. .|... ......++ .|..+.|+....|.++.| |...+|......+....
T Consensus 912 N---swrpm--------------------------ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppe 961 (1034)
T KOG4190|consen 912 N---SWRPM--------------------------ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPE 961 (1034)
T ss_pred c---cCCcc--------------------------cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCc
Confidence 2 23211 01111111 345567777777888888 88877776666654443
Q ss_pred CeEEEEEccCCCcEEEEEeCCCcEEEEECCC----CceEEEEE--cccceEEEEEEcCCCCEEEEEeCCCeEEE
Q 048801 589 SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE----GTPIRIYE--IGRFKLVDGKFSPDGTSIVLSDDVGQIYL 656 (1715)
Q Consensus 589 ~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t----gk~l~tl~--~h~~~V~svafSPDG~~LAsgs~DG~I~I 656 (1715)
+..-+. + -+--++++.....+.||--.. ...+..+. ...+..++++.-|-..-+.+|...|.|.+
T Consensus 962 pahflq-s--vgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 962 PAHFLQ-S--VGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred chhhhh-c--cCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 322221 1 122445666666677774211 11111221 23455778888887777888888888765
|
|
| >cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI | Back alignment and domain information |
|---|
Probab=98.54 E-value=3e-07 Score=92.31 Aligned_cols=97 Identities=14% Similarity=0.227 Sum_probs=74.6
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHhh--hccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhc
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQ--KLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESY 1690 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~ 1690 (1715)
++.|...+..+.. ..+++-..+..+.-.+. +.+|...+.-|+++.+||+||++.-|++++.++.|+..|+.||.+|
T Consensus 5 q~~l~~l~~~V~~--~~D~~Gr~~s~~f~~LP~~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~y 82 (110)
T cd05526 5 QELLATLFVSVMN--HQDEEGRCYSDSLAELPELAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARRL 82 (110)
T ss_pred HHHHHHHHHHHHh--ccCCCCCCchHHHHHCCCcccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHh
Confidence 4444444444433 22233333444443333 4556678889999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHH
Q 048801 1691 FIKNAALSAKVERLRDWFNRT 1711 (1715)
Q Consensus 1691 n~~~~~i~~~~~~l~~~~~~~ 1711 (1715)
|.+++.|-..|..|..+|.++
T Consensus 83 N~~~S~iy~dA~eLq~~f~~~ 103 (110)
T cd05526 83 SRTDSEIYEDAVELQQFFIKI 103 (110)
T ss_pred CcccCHHHHHHHHHHHHHHHH
Confidence 999999999999999999865
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.4e-05 Score=86.89 Aligned_cols=279 Identities=12% Similarity=0.071 Sum_probs=169.1
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCC--CcEEE--EecCCCCCeEEEEECCCCCEEEEEeC-CCeeE
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSD---DRLVKIWSMET--AFCLA--SCRGHEGDITDLAVSSNNTLVASASN-DFVIR 310 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~---DGtIrIWDl~t--gk~l~--tL~gHs~~VtsLafSpDg~lLASGS~-DGtIr 310 (1715)
+-.+.+..+-|+|+|++++|.++.. +|.|..|.++. |++.. ....-..+-+.++++++|++|+++.. .|.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 3456778899999999999998854 57888887764 54432 22222334488999999999999875 58999
Q ss_pred EEECCC-CCceE--EEeCCCCC----------eEEEEecCCCCcceEEEEec-CCCcEEEEecCCCCCcceecCCCCCCC
Q 048801 311 VWRLPD-GLPIS--VLRGHTGA----------VTAIAFSPRPSAIYQLLSSS-DDGTCRIWDARYSQYSPRIYLPKPPDA 376 (1715)
Q Consensus 311 VWDl~t-g~~l~--~L~gH~~~----------VtsLafSPdg~~~~~LaSgS-~DGtVrIWDl~tg~~l~~i~~~~~~~~ 376 (1715)
|+-+.. |.+.. .+..|.+. +.+..|.|+++ +|++.. .--.|.+|++..|.+.......
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~---~l~v~DLG~Dri~~y~~~dg~L~~~~~~~----- 186 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR---YLVVPDLGTDRIFLYDLDDGKLTPADPAE----- 186 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC---EEEEeecCCceEEEEEcccCccccccccc-----
Confidence 999865 53322 22235555 88999999998 555543 2345899999877654322110
Q ss_pred ccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-CCeEEEEeCCCCCccCCCCCceeeeeecC---CCCCee
Q 048801 377 ITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-DTFARVWSACKSSVEDSEQPIHELDVLSG---HENDVN 452 (1715)
Q Consensus 377 i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-DG~IrVWDl~t~~~~~~~~~~~~l~~l~g---H~~~V~ 452 (1715)
...+..-+.|+|+|++++..+.++ +++|.+|....... .....+.+..+.. -.....
T Consensus 187 -----------------v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g--~~~~lQ~i~tlP~dF~g~~~~a 247 (346)
T COG2706 187 -----------------VKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG--KFEELQTIDTLPEDFTGTNWAA 247 (346)
T ss_pred -----------------cCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc--eEEEeeeeccCccccCCCCcee
Confidence 022445688999999998766654 89999999876310 0011111111111 233556
Q ss_pred EEEEccCcccccccccccccccccccccCCcccCceEEEEc-CCCeEEEEecCCCccCcccccccccccccCCCCCCCCC
Q 048801 453 YVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531 (1715)
Q Consensus 453 sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~ 531 (1715)
.|..+++| .+|.++. ....|.+|.+...... +
T Consensus 248 aIhis~dG--------------------------rFLYasNRg~dsI~~f~V~~~~g~--L------------------- 280 (346)
T COG2706 248 AIHISPDG--------------------------RFLYASNRGHDSIAVFSVDPDGGK--L------------------- 280 (346)
T ss_pred EEEECCCC--------------------------CEEEEecCCCCeEEEEEEcCCCCE--E-------------------
Confidence 77778876 4444433 2335666655431100 0
Q ss_pred CCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC-eEEEEEC--CCCceEEEEe-cCCCCeEEEEE
Q 048801 532 PPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNA--VDGSLVHSLT-GHSASSYVLDV 595 (1715)
Q Consensus 532 ~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG-tI~IWDl--~sg~~l~tL~-gH~~~V~sLaf 595 (1715)
........+...-+.+.|++.|++|+++..++ .|.||.. .+|++..... .......||.|
T Consensus 281 ----~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f 344 (346)
T COG2706 281 ----ELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKF 344 (346)
T ss_pred ----EEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEE
Confidence 00111112233367789999999999988765 5777755 4565544333 23333455555
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00023 Score=83.65 Aligned_cols=274 Identities=11% Similarity=0.130 Sum_probs=167.8
Q ss_pred CCeeEEEECCCC--Cc-eEEEeCCCCCeEEEEecCCCCcceEEEEe---cCCCcEEEEecCC--CCCcceecCCCCCCCc
Q 048801 306 DFVIRVWRLPDG--LP-ISVLRGHTGAVTAIAFSPRPSAIYQLLSS---SDDGTCRIWDARY--SQYSPRIYLPKPPDAI 377 (1715)
Q Consensus 306 DGtIrVWDl~tg--~~-l~~L~gH~~~VtsLafSPdg~~~~~LaSg---S~DGtVrIWDl~t--g~~l~~i~~~~~~~~i 377 (1715)
+.-|++|++.+. +. ...+-.+.+.++-|+|+|+.+ +|.++ +.+|.|..|.+.. |.+...-..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~---~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~------- 84 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQR---HLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ------- 84 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCC---EEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-------
Confidence 567999998742 21 112234677889999999998 44444 4468888887764 432111000
Q ss_pred cCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-CCeEEEEeCCC-CCccCCCCCceeeeeecCCCCC-----
Q 048801 378 TGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-DTFARVWSACK-SSVEDSEQPIHELDVLSGHEND----- 450 (1715)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-DG~IrVWDl~t-~~~~~~~~~~~~l~~l~gH~~~----- 450 (1715)
......-+.++++++|++|+++.. .|.|.++-+.. +.+ ........|.+.
T Consensus 85 ----------------~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l-------~~~v~~~~h~g~~p~~r 141 (346)
T COG2706 85 ----------------TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL-------QPVVQVVKHTGSGPHER 141 (346)
T ss_pred ----------------ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc-------ccceeeeecCCCCCCcc
Confidence 011222378999999999888764 58899998865 322 111112223333
Q ss_pred -----eeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC-CCeEEEEecCCCccCcccccccccccccCC
Q 048801 451 -----VNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR-DGSAIIWIPRSRRSHGKVGRWTRAYHLKVP 524 (1715)
Q Consensus 451 -----V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~-DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~ 524 (1715)
+.+..|.|++ ++|+++.- --.|.+|++..+......
T Consensus 142 Q~~~h~H~a~~tP~~--------------------------~~l~v~DLG~Dri~~y~~~dg~L~~~~------------ 183 (346)
T COG2706 142 QESPHVHSANFTPDG--------------------------RYLVVPDLGTDRIFLYDLDDGKLTPAD------------ 183 (346)
T ss_pred ccCCccceeeeCCCC--------------------------CEEEEeecCCceEEEEEcccCcccccc------------
Confidence 6677788875 56666542 346888888754321100
Q ss_pred CCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCC-ceEEEEec---------CCCCeEEE
Q 048801 525 PPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDG-SLVHSLTG---------HSASSYVL 593 (1715)
Q Consensus 525 ~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg-~~l~tL~g---------H~~~V~sL 593 (1715)
........+-+.|+|+|++++..+.+ -+++|.+|..... ..+..++. ......+|
T Consensus 184 --------------~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI 249 (346)
T COG2706 184 --------------PAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI 249 (346)
T ss_pred --------------ccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence 00113345678899999999987655 4889999998773 22333321 13356778
Q ss_pred EEccCCCcEEEEEe-CCCcEEEEECCCC-ceEEEEE---cccceEEEEEEcCCCCEEEEEeCC-CeEEEEECC--CCccc
Q 048801 594 DVHPFNPRIAMSAG-YDGRTIVWDIWEG-TPIRIYE---IGRFKLVDGKFSPDGTSIVLSDDV-GQIYLLNTG--QGESQ 665 (1715)
Q Consensus 594 afSP~dg~lLaSgs-~DGtI~VWDl~tg-k~l~tl~---~h~~~V~svafSPDG~~LAsgs~D-G~I~IWdl~--tGe~~ 665 (1715)
..++ ++++|.++. ....|.++.+... ..+.... .+...-.+..|+++|++|+++..+ ..|.+|... +|++.
T Consensus 250 his~-dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 250 HISP-DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred EECC-CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 8999 677776653 3347888877542 2233222 222235688999999999988664 468888664 55443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.2e-05 Score=87.94 Aligned_cols=269 Identities=14% Similarity=0.123 Sum_probs=171.2
Q ss_pred CCcEEEEeCCCCcEEE--Ee-cCCCCCeEEEEECC---CCC-EEEEEeCCCeeEEEECCCCCceEEEeCCC------CCe
Q 048801 264 DRLVKIWSMETAFCLA--SC-RGHEGDITDLAVSS---NNT-LVASASNDFVIRVWRLPDGLPISVLRGHT------GAV 330 (1715)
Q Consensus 264 DGtIrIWDl~tgk~l~--tL-~gHs~~VtsLafSp---Dg~-lLASGS~DGtIrVWDl~tg~~l~~L~gH~------~~V 330 (1715)
-|.+.+|++...+.+. ++ ..-+..+..|.|.. +|. .|+-+..+|.|.++..........|++-. ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4678889887665443 11 22345677777763 444 56667778999999876544444444322 124
Q ss_pred EEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CC
Q 048801 331 TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NG 409 (1715)
Q Consensus 331 tsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG 409 (1715)
.++.|++.+. .++++-.+|.+.+-+.....+. .......|..+++.+.|+- +.
T Consensus 125 lslD~~~~~~---~i~vs~s~G~~~~v~~t~~~le-----------------------~vq~wk~He~E~Wta~f~~~~p 178 (339)
T KOG0280|consen 125 LSLDISTSGT---KIFVSDSRGSISGVYETEMVLE-----------------------KVQTWKVHEFEAWTAKFSDKEP 178 (339)
T ss_pred eEEEeeccCc---eEEEEcCCCcEEEEecceeeee-----------------------ecccccccceeeeeeecccCCC
Confidence 5778888877 6888888888885554333211 1123456777888899976 44
Q ss_pred CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceE
Q 048801 410 TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNI 489 (1715)
Q Consensus 410 ~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~L 489 (1715)
+++.+|+.|+.+..||++..+ ........-|...|.+|.-+|.. +.+|
T Consensus 179 nlvytGgDD~~l~~~D~R~p~-------~~i~~n~kvH~~GV~SI~ss~~~-------------------------~~~I 226 (339)
T KOG0280|consen 179 NLVYTGGDDGSLSCWDIRIPK-------TFIWHNSKVHTSGVVSIYSSPPK-------------------------PTYI 226 (339)
T ss_pred ceEEecCCCceEEEEEecCCc-------ceeeecceeeecceEEEecCCCC-------------------------CceE
Confidence 789999999999999998421 11123355688889998887743 4799
Q ss_pred EEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC--CCEEEEEecCC
Q 048801 490 VTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD--NRFVLAAIMDC 567 (1715)
Q Consensus 490 aSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD--G~~LaTgs~DG 567 (1715)
+||+.|-.|++||.++-. .++.. ....++|..+.++|. +..|+++-.+|
T Consensus 227 ~TGsYDe~i~~~DtRnm~----------------------------kPl~~-~~v~GGVWRi~~~p~~~~~lL~~CMh~G 277 (339)
T KOG0280|consen 227 ATGSYDECIRVLDTRNMG----------------------------KPLFK-AKVGGGVWRIKHHPEIFHRLLAACMHNG 277 (339)
T ss_pred EEeccccceeeeehhccc----------------------------Ccccc-CccccceEEEEecchhhhHHHHHHHhcC
Confidence 999999999999998511 01100 012378999999884 33444444443
Q ss_pred eEEEEECCCC--c---eEEEEecCCCCeEEEEEccCCCcEEEEEe-CCCcEE-EEECCCCc
Q 048801 568 RICVWNAVDG--S---LVHSLTGHSASSYVLDVHPFNPRIAMSAG-YDGRTI-VWDIWEGT 621 (1715)
Q Consensus 568 tI~IWDl~sg--~---~l~tL~gH~~~V~sLafSP~dg~lLaSgs-~DGtI~-VWDl~tgk 621 (1715)
.+|-+...+ + .+...+.|.+-++.-.|.. ...+|+|++ +|..|+ +|-..++.
T Consensus 278 -~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~-~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 278 -AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDS-KDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred -ceEEEecccccchheeeeccccccceeecccccc-ccceeeeeeccccceeeeeeeccCC
Confidence 555555443 2 3445567877777777744 234677754 677754 77654543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0001 Score=88.00 Aligned_cols=145 Identities=11% Similarity=0.129 Sum_probs=114.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCC-eeEEEECCCCCceEEEeCCCCCeEE
Q 048801 254 SGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDF-VIRVWRLPDGLPISVLRGHTGAVTA 332 (1715)
Q Consensus 254 DG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DG-tIrVWDl~tg~~l~~L~gH~~~Vts 332 (1715)
+|.+++..|. |...|.+...+-.++ -+|.+.|.-..+..++.-++.|..|| .+-|+|..+++ +..+...-+.|.+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEE
Confidence 5778888875 677777766665554 35777899999998988999999999 89999987765 4556667789999
Q ss_pred EEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeE
Q 048801 333 IAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVF 412 (1715)
Q Consensus 333 LafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~L 412 (1715)
+..+++|+ .++.+.....|.+.|+.++..... .....+-|+.++|+|++++|
T Consensus 407 v~vs~dGK---~~vvaNdr~el~vididngnv~~i-------------------------dkS~~~lItdf~~~~nsr~i 458 (668)
T COG4946 407 VKVSPDGK---KVVVANDRFELWVIDIDNGNVRLI-------------------------DKSEYGLITDFDWHPNSRWI 458 (668)
T ss_pred EEEcCCCc---EEEEEcCceEEEEEEecCCCeeEe-------------------------cccccceeEEEEEcCCceeE
Confidence 99999998 788888888999999988763211 11123459999999999999
Q ss_pred EEecCCC----eEEEEeCCCCC
Q 048801 413 VTGSSDT----FARVWSACKSS 430 (1715)
Q Consensus 413 atGs~DG----~IrVWDl~t~~ 430 (1715)
|-+--+| .|++||+.+++
T Consensus 459 AYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 459 AYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred EEecCcceeeeeEEEEecCCCe
Confidence 9887665 58999998764
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.6e-06 Score=101.97 Aligned_cols=88 Identities=19% Similarity=0.234 Sum_probs=76.3
Q ss_pred cccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEE-ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL-TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 538 ~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL-~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
...+.+|-.-++.++|+||+++|+++..|..|+|-.....-.+..+ -||..-|..++.-+ ++.|++||.|++|++||
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLWD 221 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEEEe
Confidence 3456788889999999999999999999999999888766666655 58999999999965 56789999999999999
Q ss_pred CCCCceEEEEE
Q 048801 617 IWEGTPIRIYE 627 (1715)
Q Consensus 617 l~tgk~l~tl~ 627 (1715)
+.+|+++.++.
T Consensus 222 ~~sgk~L~t~d 232 (390)
T KOG3914|consen 222 ITSGKLLDTCD 232 (390)
T ss_pred cccCCcccccc
Confidence 99999997775
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-06 Score=107.63 Aligned_cols=291 Identities=16% Similarity=0.238 Sum_probs=187.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeeEEEECCC-CCceEEEeCCC--CCeEEEEecCCCCcceEEEEecCCCcEEEEecCC
Q 048801 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPD-GLPISVLRGHT--GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY 361 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DGtIrVWDl~t-g~~l~~L~gH~--~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t 361 (1715)
.+++.++.++|.|+-+|.++.-|.+ +-|+.. +.+.+-|. |. -.|-.+.|+|.....+.+++.+. ..-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCc-chhhhhhhhc
Confidence 4577889999999999999887754 455543 45555444 32 34677889987765545555544 4455788753
Q ss_pred CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCcee
Q 048801 362 SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHE 440 (1715)
Q Consensus 362 g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~ 440 (1715)
.. .........+|...|+.+.|++.. ..+++++.|..+..||++.. ..+
T Consensus 101 ss----------------------~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp--------~~p 150 (1081)
T KOG0309|consen 101 SS----------------------SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP--------HRP 150 (1081)
T ss_pred CC----------------------ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC--------Ccc
Confidence 32 111122234567889999999865 68899999999999999864 233
Q ss_pred eeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccccc
Q 048801 441 LDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYH 520 (1715)
Q Consensus 441 l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~ 520 (1715)
+.....-......|+|+-.. ..+.+.+....|.+||++-+.
T Consensus 151 ~ys~~~w~s~asqVkwnyk~--------------------------p~vlasshg~~i~vwd~r~gs------------- 191 (1081)
T KOG0309|consen 151 FYSTSSWRSAASQVKWNYKD--------------------------PNVLASSHGNDIFVWDLRKGS------------- 191 (1081)
T ss_pred eeeeecccccCceeeecccC--------------------------cchhhhccCCceEEEeccCCC-------------
Confidence 44444334445566676432 345556677889999998532
Q ss_pred ccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEEEecCCeEEEEECCCCceEE-EEecCCCCeEEEEEccC
Q 048801 521 LKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAVDGSLVH-SLTGHSASSYVLDVHPF 598 (1715)
Q Consensus 521 l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaTgs~DGtI~IWDl~sg~~l~-tL~gH~~~V~sLafSP~ 598 (1715)
.++..+.+|...|+.+.|.. ....+.+.+.|++|+.||........ .......+|+--.+-|+
T Consensus 192 ---------------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pf 256 (1081)
T KOG0309|consen 192 ---------------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPF 256 (1081)
T ss_pred ---------------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccccc
Confidence 33445556777788887764 34467888999999999986543221 12223445555556665
Q ss_pred CCcEEEEEe----------CCCcEEEEECCC-CceEEEEEcccceEEEEEEcCCCC----------EEEEEeCCCeEEEE
Q 048801 599 NPRIAMSAG----------YDGRTIVWDIWE-GTPIRIYEIGRFKLVDGKFSPDGT----------SIVLSDDVGQIYLL 657 (1715)
Q Consensus 599 dg~lLaSgs----------~DGtI~VWDl~t-gk~l~tl~~h~~~V~svafSPDG~----------~LAsgs~DG~I~IW 657 (1715)
+..+++--. -+.....|++.+ .+++.+|.+|...|....|-..+. .|++-+.|..+++|
T Consensus 257 g~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 257 GEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred CceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 443222111 122233455544 378999999998887776654332 68999999999999
Q ss_pred ECCCC
Q 048801 658 NTGQG 662 (1715)
Q Consensus 658 dl~tG 662 (1715)
-+++.
T Consensus 337 pI~~~ 341 (1081)
T KOG0309|consen 337 PIDSQ 341 (1081)
T ss_pred eccHH
Confidence 98754
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.9e-05 Score=86.97 Aligned_cols=151 Identities=20% Similarity=0.247 Sum_probs=95.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCC--cEEEEe---cCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEE
Q 048801 248 CAIFDRSGRFVITGSDDRLVKIWSMETA--FCLASC---RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISV 322 (1715)
Q Consensus 248 ~VafSpDG~~LaTGS~DGtIrIWDl~tg--k~l~tL---~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~ 322 (1715)
.++.+.+|++||.- .|..|.|-...+. ..+... +.....=.-++||||+.+||.+...|+|+|+|+.. ..+..
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFV 79 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEE
Confidence 36778899998876 5678888766543 222333 33334567899999999999999999999999864 44444
Q ss_pred EeC-------CCCCeEEEEecCCCC---cceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCC
Q 048801 323 LRG-------HTGAVTAIAFSPRPS---AIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392 (1715)
Q Consensus 323 L~g-------H~~~VtsLafSPdg~---~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~ 392 (1715)
+.. -...|..|.|.+... ....|++-..+|.++-|-+..+.... +. .......
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~-y~----------------e~hsfsf 142 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQG-YQ----------------ENHSFSF 142 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCc-ce----------------eeEEEEe
Confidence 432 235677777766431 12356666777878777653321100 00 0000111
Q ss_pred CCCCCcceeEEEEccCCCeEEEecC
Q 048801 393 NGLQSHQILCCAYNANGTVFVTGSS 417 (1715)
Q Consensus 393 ~~~h~~~VtslafSpdG~~LatGs~ 417 (1715)
.......|.++.|+|..++|++|+.
T Consensus 143 ~~~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 143 SSHYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred cccCCCceeEEEEcCCCCEEEEecc
Confidence 1223667999999999998888764
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.2e-07 Score=113.29 Aligned_cols=166 Identities=14% Similarity=0.218 Sum_probs=125.1
Q ss_pred ccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC-CC-e
Q 048801 231 QKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN-DF-V 308 (1715)
Q Consensus 231 ~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~-DG-t 308 (1715)
..++.+++|+.|....+|++|+-+.++|+.|+..|.|+++++.+|.......+|..+|+.+.-+.||.++++.+. .. .
T Consensus 1089 SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence 456788899999999999999999999999999999999999999999999999999999999999987776544 32 5
Q ss_pred eEEEECC-CCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 309 IRVWRLP-DGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 309 IrVWDl~-tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
..+|++. ++.+.+.+. .-.++.|+.... .-+.|+......+||+.++..+.++..+..
T Consensus 1169 saLW~~~s~~~~~Hsf~----ed~~vkFsn~~q---~r~~gt~~d~a~~YDvqT~~~l~tylt~~~-------------- 1227 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFD----EDKAVKFSNSLQ---FRALGTEADDALLYDVQTCSPLQTYLTDTV-------------- 1227 (1516)
T ss_pred HHHhccccccCcccccc----ccceeehhhhHH---HHHhcccccceEEEecccCcHHHHhcCcch--------------
Confidence 7899985 355555554 346788887643 223444445688999999876655322111
Q ss_pred CCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCC
Q 048801 388 GPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~ 429 (1715)
.....-.++.|+|+..+++ .||. +||++..
T Consensus 1228 -------~~~y~~n~a~FsP~D~LIl---ndGv--LWDvR~~ 1257 (1516)
T KOG1832|consen 1228 -------TSSYSNNLAHFSPCDTLIL---NDGV--LWDVRIP 1257 (1516)
T ss_pred -------hhhhhccccccCCCcceEe---eCce--eeeeccH
Confidence 0112236788999988877 4553 7998753
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00018 Score=89.71 Aligned_cols=274 Identities=11% Similarity=0.061 Sum_probs=156.5
Q ss_pred CCEEEEEeCCCeeEEEECCCCCceEEEeCCCC----------Ce-EEEEecCCCCcceEEEEecCCCcEEEEecCCCCCc
Q 048801 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTG----------AV-TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365 (1715)
Q Consensus 297 g~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~----------~V-tsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l 365 (1715)
+..|++++.+|.|.-+|..+|+.+........ .+ ..+... +. .++.++.+|.|..+|..+|+.+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~--~~---~v~v~~~~g~l~ald~~tG~~~ 143 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA--GG---KVYIGSEKGQVYALNAEDGEVA 143 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE--CC---EEEEEcCCCEEEEEECCCCCCc
Confidence 55777777888888889888887776542210 00 011221 22 5777888999999999999877
Q ss_pred ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeE-EEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee
Q 048801 366 PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILC-CAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL 444 (1715)
Q Consensus 366 ~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vts-lafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l 444 (1715)
.+...... +.+ ..+ .+..+++++.+|.|..+|..+++.. ...
T Consensus 144 W~~~~~~~--------------------------~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~---------W~~ 186 (394)
T PRK11138 144 WQTKVAGE--------------------------ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVK---------WTV 186 (394)
T ss_pred ccccCCCc--------------------------eecCCEE--ECCEEEEECCCCEEEEEEccCCCEe---------eee
Confidence 65543211 111 011 1335666777899999999887542 111
Q ss_pred cCCCCCeeEEE--EccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccccccc
Q 048801 445 SGHENDVNYVQ--FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLK 522 (1715)
Q Consensus 445 ~gH~~~V~sLa--fspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~ 522 (1715)
.... +...+. -+|. .....++.++.+|.+..+|..+++.. |.....
T Consensus 187 ~~~~-~~~~~~~~~sP~------------------------v~~~~v~~~~~~g~v~a~d~~~G~~~-----W~~~~~-- 234 (394)
T PRK11138 187 NLDV-PSLTLRGESAPA------------------------TAFGGAIVGGDNGRVSAVLMEQGQLI-----WQQRIS-- 234 (394)
T ss_pred cCCC-CcccccCCCCCE------------------------EECCEEEEEcCCCEEEEEEccCChhh-----heeccc--
Confidence 1110 000000 0010 01245777888999999998887632 221100
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC--CCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCC
Q 048801 523 VPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL--DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP 600 (1715)
Q Consensus 523 ~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP--DG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg 600 (1715)
.+. .......+ ..+..+| .+..|++++.+|.+..+|+.+|+.+....-. ....+.. .++
T Consensus 235 ~~~--------~~~~~~~~-------~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~--~~~ 295 (394)
T PRK11138 235 QPT--------GATEIDRL-------VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV--DGG 295 (394)
T ss_pred cCC--------Cccchhcc-------cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE--ECC
Confidence 000 00000000 0011111 2456777778999999999999987765421 1112222 133
Q ss_pred cEEEEEeCCCcEEEEECCCCceEEEEEcccc-eEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 601 RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRF-KLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 601 ~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~-~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
.|+.++.+|.|..+|..+|+.+........ ......+ .+..|++++.+|.|+++|..+|+.+-
T Consensus 296 -~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 296 -RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 445567899999999999988765432111 1122222 25678889999999999999998663
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.3e-06 Score=95.62 Aligned_cols=236 Identities=17% Similarity=0.212 Sum_probs=149.2
Q ss_pred CcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC------------CeeEEEEccCccccc
Q 048801 397 SHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN------------DVNYVQFSGCAVASR 464 (1715)
Q Consensus 397 ~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~------------~V~sLafspdg~as~ 464 (1715)
...|+++.|...|.+|++|...|.|.+|.-..... -..+.+..+.+|.. .|+.+.|..++
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~----ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t---- 97 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG----CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT---- 97 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccc----cchhhhhhhcccccchhhhhhccHHHHhhheeeecCC----
Confidence 45599999999999999999999999998765321 11122334455542 34555554433
Q ss_pred ccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcc-cccccccccccCCCCCCCCCCC----------
Q 048801 465 SAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGK-VGRWTRAYHLKVPPPPLPPQPP---------- 533 (1715)
Q Consensus 465 ~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~-~~~~~~~~~l~~~~~~~~~~~~---------- 533 (1715)
....++..+.|.+|++|.+........ -......++.....+.......
T Consensus 98 --------------------~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~ 157 (460)
T COG5170 98 --------------------GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDE 157 (460)
T ss_pred --------------------CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccce
Confidence 135777888999999999876432110 0111122222222111111000
Q ss_pred --CCCCcc-cccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce---EEEEecCC-----CCeEEEEEccCCCcE
Q 048801 534 --RGGPRQ-RLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL---VHSLTGHS-----ASSYVLDVHPFNPRI 602 (1715)
Q Consensus 534 --~g~~~~-~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~---l~tL~gH~-----~~V~sLafSP~dg~l 602 (1715)
...+.. ....|..-|+++.|..|...++++ .|-.|.+|++.-... +..++.|. ..|++..|||....+
T Consensus 158 iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~ 236 (460)
T COG5170 158 IIAAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNV 236 (460)
T ss_pred EEEeccceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcce
Confidence 011111 124677789999999999888865 577899999865432 22334453 457888999977777
Q ss_pred EEEEeCCCcEEEEECCCCc------eEE----------EEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 603 AMSAGYDGRTIVWDIWEGT------PIR----------IYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 603 LaSgs~DGtI~VWDl~tgk------~l~----------tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
+.-.+..|.|++-|++... .+. -+......|.++.|++.|++|++-+. -+|.|||+...
T Consensus 237 fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 237 FMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred EEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 7778889999999987321 111 11112346788999999999998776 68999998654
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=4e-05 Score=86.03 Aligned_cols=198 Identities=13% Similarity=0.082 Sum_probs=135.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCcE-EEEecCCCCCeEEEEECCC-CCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEE
Q 048801 256 RFVITGSDDRLVKIWSMETAFC-LASCRGHEGDITDLAVSSN-NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAI 333 (1715)
Q Consensus 256 ~~LaTGS~DGtIrIWDl~tgk~-l~tL~gHs~~VtsLafSpD-g~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsL 333 (1715)
.+||.||.-|...+|...+... +..+..|...|+-+.-..+ ..-+..++.|.++++.++.-+..-..+.-..-.+.++
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 4899999999999999986543 3444455554443322222 2346667888899988886554333332222338899
Q ss_pred EecCCCCcceEEEEecCCCcEEEEecCCCCC-cceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeE
Q 048801 334 AFSPRPSAIYQLLSSSDDGTCRIWDARYSQY-SPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVF 412 (1715)
Q Consensus 334 afSPdg~~~~~LaSgS~DGtVrIWDl~tg~~-l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~L 412 (1715)
++++++. .+++.+....|.+|.+..... +..++. ......-.+..|+.....+
T Consensus 165 ~~snd~~---~~~~Vgds~~Vf~y~id~~sey~~~~~~-----------------------a~t~D~gF~~S~s~~~~~F 218 (344)
T KOG4532|consen 165 HYSNDPS---WGSSVGDSRRVFRYAIDDESEYIENIYE-----------------------APTSDHGFYNSFSENDLQF 218 (344)
T ss_pred EEcCCCc---eEEEecCCCcceEEEeCCccceeeeeEe-----------------------cccCCCceeeeeccCcceE
Confidence 9999998 788889999999998865331 111111 1112334688999999999
Q ss_pred EEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEE
Q 048801 413 VTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTC 492 (1715)
Q Consensus 413 atGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSg 492 (1715)
|+++.||++.|||++...... ......-..|.+.+..+.|++.+. -++|+..
T Consensus 219 Av~~Qdg~~~I~DVR~~~tpm----~~~sstrp~hnGa~R~c~Fsl~g~------------------------lDLLf~s 270 (344)
T KOG4532|consen 219 AVVFQDGTCAIYDVRNMATPM----AEISSTRPHHNGAFRVCRFSLYGL------------------------LDLLFIS 270 (344)
T ss_pred EEEecCCcEEEEEecccccch----hhhcccCCCCCCceEEEEecCCCc------------------------ceEEEEe
Confidence 999999999999998753211 111223345899999999998652 2677777
Q ss_pred cCCCeEEEEecCCCc
Q 048801 493 SRDGSAIIWIPRSRR 507 (1715)
Q Consensus 493 S~DGsIrIWDl~t~~ 507 (1715)
-.-+.+.+.|+++..
T Consensus 271 Ehfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 271 EHFSRVHVVDTRNYV 285 (344)
T ss_pred cCcceEEEEEcccCc
Confidence 778889999998755
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.6e-05 Score=92.65 Aligned_cols=297 Identities=16% Similarity=0.149 Sum_probs=191.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC--C-CceEEEeCCCCCeEEEEecCCCCcceEEEEecC-CCcEEEEec
Q 048801 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPD--G-LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD-DGTCRIWDA 359 (1715)
Q Consensus 284 Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t--g-~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~-DGtVrIWDl 359 (1715)
|...|+.+..+ -.+++.+++.||.++.|--.. | +.+..+..|-+.|.+++.+-++. ++.|.+. |..++++|+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~---L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW---LFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce---eEeeccCcccceeEEEe
Confidence 77777776654 456999999999999997532 2 33455667889999999999986 6778777 999999998
Q ss_pred CCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC--CeEE-EecCCCeEEEEeCCCCCccCCCC
Q 048801 360 RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG--TVFV-TGSSDTFARVWSACKSSVEDSEQ 436 (1715)
Q Consensus 360 ~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG--~~La-tGs~DG~IrVWDl~t~~~~~~~~ 436 (1715)
.+-.....+.+...+. ..++..++.. ..|+ ..-.+|.+.|+|-....+
T Consensus 84 En~DminmiKL~~lPg------------------------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~----- 134 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPG------------------------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC----- 134 (558)
T ss_pred eccchhhhcccccCCC------------------------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC-----
Confidence 7655443332221110 1111122221 1233 334578899999765422
Q ss_pred CceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccc
Q 048801 437 PIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWT 516 (1715)
Q Consensus 437 ~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~ 516 (1715)
.....-.-|..+|.++.+.+.+ +.+++....|.|..|.... .
T Consensus 135 --q~~~fkklH~sPV~~i~y~qa~--------------------------Ds~vSiD~~gmVEyWs~e~-~--------- 176 (558)
T KOG0882|consen 135 --QDGYFKKLHFSPVKKIRYNQAG--------------------------DSAVSIDISGMVEYWSAEG-P--------- 176 (558)
T ss_pred --ccceecccccCceEEEEeeccc--------------------------cceeeccccceeEeecCCC-c---------
Confidence 2234445689999999999876 7889999999999997762 0
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe------------
Q 048801 517 RAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT------------ 584 (1715)
Q Consensus 517 ~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~------------ 584 (1715)
+..+............-+..+........++.|+|+|..+.+-+.|..|+++++.+|++++.+.
T Consensus 177 ----~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks 252 (558)
T KOG0882|consen 177 ----FQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKS 252 (558)
T ss_pred ----ccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccc
Confidence 0000000001111111222233445668899999999999999999999999999988665442
Q ss_pred --------------------cCCC-CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcc--------------
Q 048801 585 --------------------GHSA-SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG-------------- 629 (1715)
Q Consensus 585 --------------------gH~~-~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h-------------- 629 (1715)
.|.. .-+.+.|.- .+.+|+-|+.=| |+|.++.++++++.+--.
T Consensus 253 ~y~l~~VelgRRmaverelek~~~~~~~~~~fde-s~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~ 330 (558)
T KOG0882|consen 253 PYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE-SGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQGA 330 (558)
T ss_pred ccccceeehhhhhhHHhhHhhhcCcccceeEEcC-CCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhhh
Confidence 1111 113345655 566777776555 899999999888876310
Q ss_pred ---cce-E-------EEEEEcCCCCEEEEEeCCCeEEEE
Q 048801 630 ---RFK-L-------VDGKFSPDGTSIVLSDDVGQIYLL 657 (1715)
Q Consensus 630 ---~~~-V-------~svafSPDG~~LAsgs~DG~I~IW 657 (1715)
+.. + -.+.+-+|-..++++-.-.++++|
T Consensus 331 ~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 331 QKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred hhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 000 0 012466777777788888888888
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00031 Score=88.19 Aligned_cols=135 Identities=10% Similarity=-0.040 Sum_probs=81.9
Q ss_pred CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCE-EEEEeCC---CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCC
Q 048801 265 RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTL-VASASND---FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPS 340 (1715)
Q Consensus 265 GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~l-LASGS~D---GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~ 340 (1715)
..|.+-|.+... .+.+.... .+....|+|||+. ++..+.+ ..|.++|+.+|+..... ...+.+....|+|++.
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCC
Confidence 345555554333 34343333 7888999999984 6654443 56899999888755443 3556677889999998
Q ss_pred cceEEEEecC--CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-
Q 048801 341 AIYQLLSSSD--DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS- 417 (1715)
Q Consensus 341 ~~~~LaSgS~--DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~- 417 (1715)
. .+++.+. +..|.++|+.++... .+.. +........|+|||+.|+..+.
T Consensus 246 ~--la~~~~~~g~~~Iy~~dl~~g~~~-~LT~-------------------------~~~~d~~p~~SPDG~~I~F~Sdr 297 (419)
T PRK04043 246 K--LLLTMAPKGQPDIYLYDTNTKTLT-QITN-------------------------YPGIDVNGNFVEDDKRIVFVSDR 297 (419)
T ss_pred E--EEEEEccCCCcEEEEEECCCCcEE-Eccc-------------------------CCCccCccEECCCCCEEEEEECC
Confidence 4 3333333 456777787766422 1110 0111234579999987776653
Q ss_pred CC--eEEEEeCCCCC
Q 048801 418 DT--FARVWSACKSS 430 (1715)
Q Consensus 418 DG--~IrVWDl~t~~ 430 (1715)
.| .|.++++.+++
T Consensus 298 ~g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 298 LGYPNIFMKKLNSGS 312 (419)
T ss_pred CCCceEEEEECCCCC
Confidence 23 57777776643
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00036 Score=80.02 Aligned_cols=214 Identities=14% Similarity=0.128 Sum_probs=114.9
Q ss_pred cceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccc
Q 048801 398 HQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 398 ~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
.+-+-++||||+.+||.+...|+|++||+....+. ...+.. .....-...|..+.|....
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~--~~~~d~~~Aiagl~Fl~~~----------------- 103 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAM--SFPGDLSDAIAGLIFLEYK----------------- 103 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCccc--ccCCccccceeeeEeeccc-----------------
Confidence 34678999999999999999999999999754321 111110 0011122355555565421
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc-cCCCCCeeEEEeCCC
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL-LPTPRGVNMIVWSLD 556 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l-~~h~~~VtslafSPD 556 (1715)
....| ...|++...+|.++-|-+..+... ...... ...+ ...+.+|++++++|.
T Consensus 104 -~s~~w--s~ELlvi~Y~G~L~Sy~vs~gt~q----~y~e~h------------------sfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 104 -KSAQW--SYELLVINYRGQLRSYLVSVGTNQ----GYQENH------------------SFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred -ccccc--ceeEEEEeccceeeeEEEEcccCC----cceeeE------------------EEEecccCCCceeEEEEcCC
Confidence 00011 135666667777777765322100 000010 1111 224678999999999
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEE-EEeCCC------cEEEEECCCCceEEEEEcc
Q 048801 557 NRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAM-SAGYDG------RTIVWDIWEGTPIRIYEIG 629 (1715)
Q Consensus 557 G~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLa-Sgs~DG------tI~VWDl~tgk~l~tl~~h 629 (1715)
.++|++|+.... .++. -.+....+++-..-.+.+.+.. +...|+ +..+|.+-+.+........
T Consensus 159 h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 228 (282)
T PF15492_consen 159 HRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQE 228 (282)
T ss_pred CCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccC
Confidence 998888764321 0000 0011112222222111222211 111121 1234444332222211224
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 630 RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 630 ~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
...|..|..||||+.||+...+|.|.+|++.+-..+.
T Consensus 229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~ 265 (282)
T PF15492_consen 229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQR 265 (282)
T ss_pred CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhc
Confidence 5679999999999999999999999999998765443
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00018 Score=80.88 Aligned_cols=231 Identities=10% Similarity=-0.040 Sum_probs=146.7
Q ss_pred CCCcEEEEeCCCCc--EEEEecCCCCCeEEEEECC-----CCCEEEEEeCCCeeEEEECCCCCc-eEEEeCCCCCeEEEE
Q 048801 263 DDRLVKIWSMETAF--CLASCRGHEGDITDLAVSS-----NNTLVASASNDFVIRVWRLPDGLP-ISVLRGHTGAVTAIA 334 (1715)
Q Consensus 263 ~DGtIrIWDl~tgk--~l~tL~gHs~~VtsLafSp-----Dg~lLASGS~DGtIrVWDl~tg~~-l~~L~gH~~~VtsLa 334 (1715)
....|-+|++-+.. .+... +.|.|.| .--+||.|+..|...+|...+... +.....|...|+-+.
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~ 122 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK 122 (344)
T ss_pred ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence 33456777765432 23333 2344544 335899999999999999986543 333444544444332
Q ss_pred ecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEE
Q 048801 335 FSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVT 414 (1715)
Q Consensus 335 fSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~Lat 414 (1715)
=.-+... -+..++.|.++++.++..+.....+..+ .-.+.+++++++++++++
T Consensus 123 r~cd~~~--~~~i~sndht~k~~~~~~~s~~~~~h~~-------------------------~~~~ns~~~snd~~~~~~ 175 (344)
T KOG4532|consen 123 RYCDLKF--PLNIASNDHTGKTMVVSGDSNKFAVHNQ-------------------------NLTQNSLHYSNDPSWGSS 175 (344)
T ss_pred hhccccc--ceeeccCCcceeEEEEecCcccceeecc-------------------------ccceeeeEEcCCCceEEE
Confidence 2222222 4677888999999888655432222111 112788999999999999
Q ss_pred ecCCCeEEEEeCCCCCccCCCCCceeee-eecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEc
Q 048801 415 GSSDTFARVWSACKSSVEDSEQPIHELD-VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS 493 (1715)
Q Consensus 415 Gs~DG~IrVWDl~t~~~~~~~~~~~~l~-~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS 493 (1715)
.+....|..|.+..... .... .....++.-.+..|+... ..+|++.
T Consensus 176 Vgds~~Vf~y~id~~se-------y~~~~~~a~t~D~gF~~S~s~~~--------------------------~~FAv~~ 222 (344)
T KOG4532|consen 176 VGDSRRVFRYAIDDESE-------YIENIYEAPTSDHGFYNSFSEND--------------------------LQFAVVF 222 (344)
T ss_pred ecCCCcceEEEeCCccc-------eeeeeEecccCCCceeeeeccCc--------------------------ceEEEEe
Confidence 99999999998875321 1111 233334445566676653 6899999
Q ss_pred CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC--EEEEEecCCeEEE
Q 048801 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR--FVLAAIMDCRICV 571 (1715)
Q Consensus 494 ~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~--~LaTgs~DGtI~I 571 (1715)
.||++.|||++...... . ........|.+.++.+.|++-|. +|+..-.-+.+.|
T Consensus 223 Qdg~~~I~DVR~~~tpm------------------~------~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv 278 (344)
T KOG4532|consen 223 QDGTCAIYDVRNMATPM------------------A------EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHV 278 (344)
T ss_pred cCCcEEEEEecccccch------------------h------hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEE
Confidence 99999999998632110 0 01112234788999999998664 4555555678999
Q ss_pred EECCCCceEEEEe
Q 048801 572 WNAVDGSLVHSLT 584 (1715)
Q Consensus 572 WDl~sg~~l~tL~ 584 (1715)
.|++++.-...+.
T Consensus 279 ~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 279 VDTRNYVNHQVIV 291 (344)
T ss_pred EEcccCceeeEEe
Confidence 9999987666553
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.7e-05 Score=88.60 Aligned_cols=197 Identities=14% Similarity=0.160 Sum_probs=119.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEE------------EEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCL------------ASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l------------~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
|+.+.|+-+ ..|+++..++.+......++.+. ..+..|.++-.+-+.+-.++.++++..||.+.+.+
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 556666543 36677766666666555444332 33334444444444444577899999999999999
Q ss_pred CCCCCc-eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCc------EEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 314 LPDGLP-ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT------CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 314 l~tg~~-l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGt------VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
.+.-.. ...+..-...-.+.++...+. ++.++.=|+ .++|+++-....
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~----~i~s~~~g~~n~~d~~~a~~~~p~~t~--------------------- 172 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGN----SILSGGCGNWNAQDNFYANTLDPIKTL--------------------- 172 (319)
T ss_pred chHHHhhhhhcccccccccccceeeccc----EEecCCcceEeeccceeeecccccccc---------------------
Confidence 765211 111111111122233333332 233332222 334443311100
Q ss_pred CCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~ 465 (1715)
... ......|.+++-+|.. .++++|+.||.+-+||.+.. ..+...+..|...|+.+.|+|..
T Consensus 173 --~~~--~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~--------~~p~S~l~ahk~~i~eV~FHpk~----- 235 (319)
T KOG4714|consen 173 --IPS--KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV--------AMPVSLLKAHKAEIWEVHFHPKN----- 235 (319)
T ss_pred --ccc--ccccccchhhhCCcccccEEEEecCCCeEEEEEcccc--------cchHHHHHHhhhhhhheeccCCC-----
Confidence 000 0112238888888854 57788899999999999875 23466788999999999999965
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 505 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t 505 (1715)
+..|++++.||.+..||..+
T Consensus 236 --------------------p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 236 --------------------PEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred --------------------chheeEecCCCcEEEEcCCC
Confidence 58999999999999999875
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2e-06 Score=107.47 Aligned_cols=217 Identities=17% Similarity=0.281 Sum_probs=146.6
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~ 471 (1715)
....+....+|++|+.+.++|++|+..|.|++|++.+|.. ......|...|+.+.-+-+|
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~---------e~s~ncH~SavT~vePs~dg----------- 1155 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM---------EESVNCHQSAVTLVEPSVDG----------- 1155 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc---------cccccccccccccccccCCc-----------
Confidence 3445567799999999999999999999999999998743 34567899999988877765
Q ss_pred cccccccccCCcccCceEEEEcCCC-eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeE
Q 048801 472 KEENVPKFKNSWFCHDNIVTCSRDG-SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNM 550 (1715)
Q Consensus 472 ~~~~~~~~~~s~~~~~~LaSgS~DG-sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vts 550 (1715)
...|.+.+... -..+|++.+. +++... -..-.+
T Consensus 1156 --------------s~~Ltsss~S~PlsaLW~~~s~----------------------------~~~~Hs----f~ed~~ 1189 (1516)
T KOG1832|consen 1156 --------------STQLTSSSSSSPLSALWDASST----------------------------GGPRHS----FDEDKA 1189 (1516)
T ss_pred --------------ceeeeeccccCchHHHhccccc----------------------------cCcccc----ccccce
Confidence 12333333333 4567877531 111111 123456
Q ss_pred EEeCCCCCEEEEEecCCeEEEEECCCCceEEEE-ec---CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEE
Q 048801 551 IVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL-TG---HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY 626 (1715)
Q Consensus 551 lafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL-~g---H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl 626 (1715)
+.|+..-.+-+.|+....+.|||+.++..+.++ .+ ....-++..|+|.+. +++ .|| .+||++..+.++.|
T Consensus 1190 vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~-LIl---ndG--vLWDvR~~~aIh~F 1263 (1516)
T KOG1832|consen 1190 VKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT-LIL---NDG--VLWDVRIPEAIHRF 1263 (1516)
T ss_pred eehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc-eEe---eCc--eeeeeccHHHHhhh
Confidence 778776555566666678999999999887763 22 222336788999554 443 465 37999988888888
Q ss_pred EcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccccceeecCCCccEEEcCCCCeee
Q 048801 627 EIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKYDQFFLGDYRPLIRDSLGNVLD 691 (1715)
Q Consensus 627 ~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~~~~~~fs~D~r~L~~d~~g~vld 691 (1715)
.... --....|+|.|..++.-++ |||+.+-+.+...+. -|-..+.+.+.|.|+-
T Consensus 1264 D~ft-~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~-----Ldqc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1264 DQFT-DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPS-----LDQCAVTFNSTGDVMY 1317 (1516)
T ss_pred hhhe-ecccccccCCCceEEeech-----hhhhHHHHHHhcCcc-----ccceEEEeccCccchh
Confidence 7433 2224589999999988765 899988766654441 2444566677777654
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00035 Score=87.72 Aligned_cols=222 Identities=7% Similarity=0.005 Sum_probs=122.5
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec-CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS-DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS-~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
.|.+-|.+ |...+.+... +.+....|+|+++...++.+-. .+..|.++|+.+++......
T Consensus 170 ~l~~~d~d-g~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~----------------- 230 (419)
T PRK04043 170 NIVLADYT-LTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS----------------- 230 (419)
T ss_pred eEEEECCC-CCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-----------------
Confidence 55555653 4434444433 3788999999997421222222 24678889998776322211
Q ss_pred CCCCCCCCCCCcceeEEEEccCCCeEEEe-cC--CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANGTVFVTG-SS--DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVAS 463 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG~~LatG-s~--DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as 463 (1715)
.........|+|||+.|+.. +. +..|.++++.++. ...+..+........|+|++
T Consensus 231 ---------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~----------~~~LT~~~~~d~~p~~SPDG--- 288 (419)
T PRK04043 231 ---------SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT----------LTQITNYPGIDVNGNFVEDD--- 288 (419)
T ss_pred ---------CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc----------EEEcccCCCccCccEECCCC---
Confidence 12234567899999876644 32 3567777876542 22233333323455799987
Q ss_pred cccccccccccccccccCCcccCceEEEEcCCC--eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc
Q 048801 464 RSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG--SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL 541 (1715)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG--sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l 541 (1715)
...+++....| .|.++|+.++.. .++
T Consensus 289 ----------------------~~I~F~Sdr~g~~~Iy~~dl~~g~~------------------------------~rl 316 (419)
T PRK04043 289 ----------------------KRIVFVSDRLGYPNIFMKKLNSGSV------------------------------EQV 316 (419)
T ss_pred ----------------------CEEEEEECCCCCceEEEEECCCCCe------------------------------EeC
Confidence 23444444444 455556654321 011
Q ss_pred cCCCCCeeEEEeCCCCCEEEEEecC---------CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCc-
Q 048801 542 LPTPRGVNMIVWSLDNRFVLAAIMD---------CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGR- 611 (1715)
Q Consensus 542 ~~h~~~VtslafSPDG~~LaTgs~D---------GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGt- 611 (1715)
.... . ....|||||++|+..+.. ..|.+.|+.++.. ..+.... ......|+|++..++++....+.
T Consensus 317 t~~g-~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~ 392 (419)
T PRK04043 317 VFHG-K-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANG-VNQFPRFSSDGGSIMFIKYLGNQS 392 (419)
T ss_pred ccCC-C-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCC-CcCCeEECCCCCEEEEEEccCCcE
Confidence 1001 0 124899999999876653 3688889888764 4444332 23368899955555555443333
Q ss_pred -EEEEECCCCceEEEEE
Q 048801 612 -TIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 612 -I~VWDl~tgk~l~tl~ 627 (1715)
+.+.++ +|.....+.
T Consensus 393 ~L~~~~l-~g~~~~~l~ 408 (419)
T PRK04043 393 ALGIIRL-NYNKSFLFP 408 (419)
T ss_pred EEEEEec-CCCeeEEee
Confidence 555566 344344443
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.8e-06 Score=96.45 Aligned_cols=122 Identities=29% Similarity=0.346 Sum_probs=93.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L 323 (1715)
.+|+.+..+......-.+++...+.+|....+.+ ..+-||-.-+++++|+||+++|+++..|..|+|-.....-.+..+
T Consensus 111 ~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf 189 (390)
T KOG3914|consen 111 TAISFIREDTSVLVADKAGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF 189 (390)
T ss_pred ceeeeeeccceEEEEeecCCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh
Confidence 3444444444433334456667788888776444 445679999999999999999999999999999877655444444
Q ss_pred -eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecC
Q 048801 324 -RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYL 370 (1715)
Q Consensus 324 -~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~ 370 (1715)
-||..-|..++..++. .|+++|.|++|++||+.+|+++.++.+
T Consensus 190 clGH~eFVS~isl~~~~----~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 190 CLGHKEFVSTISLTDNY----LLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred ccccHhheeeeeeccCc----eeeecCCCCcEEEEecccCCcccccch
Confidence 5899999999999875 689999999999999999998766543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00085 Score=78.04 Aligned_cols=229 Identities=15% Similarity=0.074 Sum_probs=144.5
Q ss_pred EEEECC-CCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEec-CCCCcceEEEEecCCCcEEEEecCCCCCcce
Q 048801 290 DLAVSS-NNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFS-PRPSAIYQLLSSSDDGTCRIWDARYSQYSPR 367 (1715)
Q Consensus 290 sLafSp-Dg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafS-Pdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~ 367 (1715)
+++|.+ ++.++++-...+.|..|+..++.... +.... ...+++. +++ .|+.+...+ +.++|+.+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g----~l~v~~~~~-~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG----RLYVADSGG-IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS----EEEEEETTC-EEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC----EEEEEEcCc-eEEEecCCCcEEEE
Confidence 578887 67777777778999999988775433 33222 7778887 564 456666555 55569888764433
Q ss_pred ecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC--------CeEEEEeCCCCCccCCCCCce
Q 048801 368 IYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD--------TFARVWSACKSSVEDSEQPIH 439 (1715)
Q Consensus 368 i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D--------G~IrVWDl~t~~~~~~~~~~~ 439 (1715)
...... .........+++.++|++.++.... |.|..++.. ++
T Consensus 76 ~~~~~~--------------------~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--------- 125 (246)
T PF08450_consen 76 ADLPDG--------------------GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--------- 125 (246)
T ss_dssp EEEETT--------------------CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE---------
T ss_pred eeccCC--------------------CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce---------
Confidence 322100 0023457899999999987776543 556666665 21
Q ss_pred eeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCcc-Cccccccccc
Q 048801 440 ELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS-HGKVGRWTRA 518 (1715)
Q Consensus 440 ~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~-~~~~~~~~~~ 518 (1715)
+..+...-...+.|+|+|++ ..++++-+..+.|..+++..... .... .
T Consensus 126 -~~~~~~~~~~pNGi~~s~dg-------------------------~~lyv~ds~~~~i~~~~~~~~~~~~~~~----~- 174 (246)
T PF08450_consen 126 -VTVVADGLGFPNGIAFSPDG-------------------------KTLYVADSFNGRIWRFDLDADGGELSNR----R- 174 (246)
T ss_dssp -EEEEEEEESSEEEEEEETTS-------------------------SEEEEEETTTTEEEEEEEETTTCCEEEE----E-
T ss_pred -EEEEecCcccccceEECCcc-------------------------hheeecccccceeEEEeccccccceeee----e-
Confidence 12222233457889999986 23556778888999988864221 0000 0
Q ss_pred ccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEc-c
Q 048801 519 YHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVH-P 597 (1715)
Q Consensus 519 ~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafS-P 597 (1715)
....+....+....+++..+|++.++....+.|.+++.. |+.+..+......+++++|. +
T Consensus 175 ------------------~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~ 235 (246)
T PF08450_consen 175 ------------------VFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGP 235 (246)
T ss_dssp ------------------EEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEEST
T ss_pred ------------------eEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECC
Confidence 000111112347789999999998888889999999987 99998887666689999994 5
Q ss_pred CCCcEEEEE
Q 048801 598 FNPRIAMSA 606 (1715)
Q Consensus 598 ~dg~lLaSg 606 (1715)
+...+++|.
T Consensus 236 ~~~~L~vTt 244 (246)
T PF08450_consen 236 DGKTLYVTT 244 (246)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEe
Confidence 445566654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00056 Score=78.51 Aligned_cols=140 Identities=17% Similarity=0.120 Sum_probs=90.1
Q ss_pred CCCcEEEEeCCCCcEEEEecCC--CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCC
Q 048801 263 DDRLVKIWSMETAFCLASCRGH--EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPS 340 (1715)
Q Consensus 263 ~DGtIrIWDl~tgk~l~tL~gH--s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~ 340 (1715)
++|+|..||..+|+.+....-- .....+. ..+++..|++++.++.|..||..+|+.+..+.. ...+.......++
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~- 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGG- 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETT-
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeeccc-
Confidence 3789999999999998887531 1222222 233566777888999999999999998887764 2222221222232
Q ss_pred cceEEEEecCCCcEEEEecCCCCCcceecC-CCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC
Q 048801 341 AIYQLLSSSDDGTCRIWDARYSQYSPRIYL-PKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT 419 (1715)
Q Consensus 341 ~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~-~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG 419 (1715)
.++.++.++.|..+|..+|+.+..... ..+... ..........+..++++..++
T Consensus 78 ---~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~g 132 (238)
T PF13360_consen 78 ---RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----------------------VRSSSSPAVDGDRLYVGTSSG 132 (238)
T ss_dssp ---EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----------------------TB--SEEEEETTEEEEEETCS
T ss_pred ---ccccccceeeeEecccCCcceeeeeccccccccc----------------------cccccCceEecCEEEEEeccC
Confidence 566677888999999999988766322 111000 011112222377788888899
Q ss_pred eEEEEeCCCCC
Q 048801 420 FARVWSACKSS 430 (1715)
Q Consensus 420 ~IrVWDl~t~~ 430 (1715)
.|..+|+.+++
T Consensus 133 ~l~~~d~~tG~ 143 (238)
T PF13360_consen 133 KLVALDPKTGK 143 (238)
T ss_dssp EEEEEETTTTE
T ss_pred cEEEEecCCCc
Confidence 99999998764
|
... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0005 Score=78.88 Aligned_cols=223 Identities=14% Similarity=0.087 Sum_probs=132.9
Q ss_pred CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCC
Q 048801 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSS 430 (1715)
Q Consensus 351 DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~ 430 (1715)
+|+|..||..+|+.+....+... .....+.. .+++..+++++.++.|..||..+++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~-----------------------~~~~~~~~-~~~~~~v~~~~~~~~l~~~d~~tG~ 57 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG-----------------------IGGPVATA-VPDGGRVYVASGDGNLYALDAKTGK 57 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS-----------------------CSSEEETE-EEETTEEEEEETTSEEEEEETTTSE
T ss_pred CCEEEEEECCCCCEEEEEECCCC-----------------------CCCccceE-EEeCCEEEEEcCCCEEEEEECCCCC
Confidence 68899999999887776644110 01112112 2245566667889999999998764
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
. +..... ...+..... .....++.++.++.|..+|..+++..-
T Consensus 58 ~---------~W~~~~-~~~~~~~~~---------------------------~~~~~v~v~~~~~~l~~~d~~tG~~~W 100 (238)
T PF13360_consen 58 V---------LWRFDL-PGPISGAPV---------------------------VDGGRVYVGTSDGSLYALDAKTGKVLW 100 (238)
T ss_dssp E---------EEEEEC-SSCGGSGEE---------------------------EETTEEEEEETTSEEEEEETTTSCEEE
T ss_pred E---------EEEeec-cccccceee---------------------------ecccccccccceeeeEecccCCcceee
Confidence 3 222221 111100001 113567777788899999988876432
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCe
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASS 590 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V 590 (1715)
.. ..... .............++..++++..++.|..+|+.+|+.+..+.......
T Consensus 101 ~~----~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 101 SI----YLTSS---------------------PPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EE----EE-SS---------------------CTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ee----ccccc---------------------cccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 21 00000 000011111222237888888889999999999999999887644221
Q ss_pred -----------EEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 591 -----------YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 591 -----------~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
..+.+. ++ .++.++.+|.+..+|+.+|+.+.... ...+.. ....++..|++++.+|.|++||+
T Consensus 156 ~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 156 SSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp S--EEEETTEEEEEECC--TT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEET
T ss_pred CcceeeecccccceEEE--CC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEEC
Confidence 222222 34 55556667754444999999774332 222222 25678888888889999999999
Q ss_pred CCCccc
Q 048801 660 GQGESQ 665 (1715)
Q Consensus 660 ~tGe~~ 665 (1715)
.+|+..
T Consensus 230 ~tG~~~ 235 (238)
T PF13360_consen 230 KTGKVV 235 (238)
T ss_dssp TTTEEE
T ss_pred CCCCEE
Confidence 999743
|
... |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0019 Score=83.06 Aligned_cols=318 Identities=11% Similarity=0.030 Sum_probs=165.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCC------CeE--EEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCC
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEG------DIT--DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGH 326 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~------~Vt--sLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH 326 (1715)
+..|+.++.++.|.-.|..+|+.+-.+..... .+. .+++. ++..|+.++.++.|..+|..+|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44677777889999999999988877653322 110 11111 2267888889999999999999998877533
Q ss_pred CCC-----e-EEEEecCCCCcceEEEEec---------CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 327 TGA-----V-TAIAFSPRPSAIYQLLSSS---------DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 327 ~~~-----V-tsLafSPdg~~~~~LaSgS---------~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
... + .+..+.. . .++.++ .+|.|..+|..+|+.+............... ......
T Consensus 140 ~~~~~~~~i~ssP~v~~--~---~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~-----~~~~~~ 209 (488)
T cd00216 140 DQVPPGYTMTGAPTIVK--K---LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPT-----WGPDRQ 209 (488)
T ss_pred CCcCcceEecCCCEEEC--C---EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCC-----CCCCcc
Confidence 221 1 1122222 2 344443 4688999999999877765442111000000 000000
Q ss_pred CCCCCCcce-eEEEEccCCCeEEEecCCC------------------eEEEEeCCCCCccCCCCCceeeeeecCCCCCee
Q 048801 392 SNGLQSHQI-LCCAYNANGTVFVTGSSDT------------------FARVWSACKSSVEDSEQPIHELDVLSGHENDVN 452 (1715)
Q Consensus 392 ~~~~h~~~V-tslafSpdG~~LatGs~DG------------------~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~ 452 (1715)
........| ...++.+.+..+++++.++ .|.-+|+.+++.....+ ...|.....
T Consensus 210 ~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~-------~~~~~~~~~ 282 (488)
T cd00216 210 MWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ-------TTPHDLWDY 282 (488)
T ss_pred eecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee-------CCCCCCccc
Confidence 000001111 2345565566677776665 57777777765321110 011100000
Q ss_pred EEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCC
Q 048801 453 YVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQP 532 (1715)
Q Consensus 453 sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~ 532 (1715)
.....|.- .. ...... .....++.++.+|.+...|..+++.+-.. ...
T Consensus 283 ~~~s~p~~-------~~------~~~~~g--~~~~~V~~g~~~G~l~ald~~tG~~~W~~-----~~~------------ 330 (488)
T cd00216 283 DGPNQPSL-------AD------IKPKDG--KPVPAIVHAPKNGFFYVLDRTTGKLISAR-----PEV------------ 330 (488)
T ss_pred ccCCCCeE-------Ee------ccccCC--CeeEEEEEECCCceEEEEECCCCcEeeEe-----Eee------------
Confidence 00000000 00 000000 00136788889999999999988744321 110
Q ss_pred CCCCCcccccCCCCCeeEEEeCCCCCEEEE------------------EecCCeEEEEECCCCceEEEEecCC-------
Q 048801 533 PRGGPRQRLLPTPRGVNMIVWSLDNRFVLA------------------AIMDCRICVWNAVDGSLVHSLTGHS------- 587 (1715)
Q Consensus 533 ~~g~~~~~l~~h~~~VtslafSPDG~~LaT------------------gs~DGtI~IWDl~sg~~l~tL~gH~------- 587 (1715)
...++.+| ..++. ...+|.|.-.|+.+|+.+.......
T Consensus 331 ---------------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~ 393 (488)
T cd00216 331 ---------------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNI 393 (488)
T ss_pred ---------------ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcccccccc
Confidence 00011111 11111 2235677777888888777664321
Q ss_pred -CCe--EEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEE--EEEcCCCC
Q 048801 588 -ASS--YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVD--GKFSPDGT 643 (1715)
Q Consensus 588 -~~V--~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~s--vafSPDG~ 643 (1715)
.+. ..+.. .+.+|+.++.||.|+.+|..+|+.+..+... ..+.. +.|..+|+
T Consensus 394 g~~~~~~~~~~---~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~-~~~~a~P~~~~~~g~ 450 (488)
T cd00216 394 GFPHWGGSLAT---AGNLVFAGAADGYFRAFDATTGKELWKFRTP-SGIQATPMTYEVNGK 450 (488)
T ss_pred CCcccCcceEe---cCCeEEEECCCCeEEEEECCCCceeeEEECC-CCceEcCEEEEeCCE
Confidence 111 12222 3456777889999999999999999988753 33332 33444554
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.8e-06 Score=103.59 Aligned_cols=87 Identities=20% Similarity=0.280 Sum_probs=79.6
Q ss_pred cccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHH
Q 048801 1628 SRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDW 1707 (1715)
Q Consensus 1628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~ 1707 (1715)
........|..+..-...++|...+..||+|.+|++.|+++.|.++++++.|+++|+.||.+||.|++.+-.+|+.|.+.
T Consensus 161 ~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~ 240 (371)
T COG5076 161 DGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKY 240 (371)
T ss_pred cccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHH
Confidence 33444455788888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 048801 1708 FNRTLNK 1714 (1715)
Q Consensus 1708 ~~~~i~~ 1714 (1715)
|.+.|..
T Consensus 241 ~~~~i~~ 247 (371)
T COG5076 241 FLKLIEE 247 (371)
T ss_pred HHHHHHh
Confidence 9998874
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.7e-05 Score=86.03 Aligned_cols=110 Identities=23% Similarity=0.305 Sum_probs=80.3
Q ss_pred eeEEEeCCCC-CEEEEEecCCeEEEEECCCCceE-EEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 048801 548 VNMIVWSLDN-RFVLAAIMDCRICVWNAVDGSLV-HSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI 625 (1715)
Q Consensus 548 VtslafSPDG-~~LaTgs~DGtI~IWDl~sg~~l-~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t 625 (1715)
|++++-+|.. ..+++|+.||.|-+||.+..... ..+..|..+++-+-|||.++.-|++++.||.+..||..+ +.+..
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~l~i 260 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TFLSI 260 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC-ceEEe
Confidence 8888888854 56678889999999999887543 356789999999999999999999999999999999753 22221
Q ss_pred EE----------c------------ccceEEEE-EEcCCCCEEEEEeCCCeEEEEE
Q 048801 626 YE----------I------------GRFKLVDG-KFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 626 l~----------~------------h~~~V~sv-afSPDG~~LAsgs~DG~I~IWd 658 (1715)
-. + -.....++ .|.--|..|++|++-+.|++++
T Consensus 261 ~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 261 SNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 00 0 00011111 3444577888888888888875
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.07 E-value=1e-05 Score=66.00 Aligned_cols=38 Identities=24% Similarity=0.719 Sum_probs=36.6
Q ss_pred eeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 048801 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWS 271 (1715)
Q Consensus 234 k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWD 271 (1715)
+++.+|.+|.+.|++|+|+|++.+|++|+.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0039 Score=82.61 Aligned_cols=265 Identities=11% Similarity=0.140 Sum_probs=148.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCC
Q 048801 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQ 363 (1715)
Q Consensus 284 Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~ 363 (1715)
....|.++.|..++.-|+.+..+|.|.+-|..+.... ....-...|.+++|+|+.. .++..+..++|.+-+- +-.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee---~l~liT~~~tll~mT~-~f~ 141 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEE---LLALITGRQTLLFMTK-DFE 141 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCc---EEEEEeCCcEEEEEec-ccc
Confidence 3468999999999999999999999999988766432 2223457899999999998 6677777777766432 111
Q ss_pred CcceecCCCCCC-----CccCccC---CCC-CCC------CCCCC-----CCCCcceeEEEEccCCCeEEEe-----cCC
Q 048801 364 YSPRIYLPKPPD-----AITGKSN---VPS-NNG------PSSSN-----GLQSHQILCCAYNANGTVFVTG-----SSD 418 (1715)
Q Consensus 364 ~l~~i~~~~~~~-----~i~g~~~---~~~-~~~------~~~~~-----~~h~~~VtslafSpdG~~LatG-----s~D 418 (1715)
.+....+..... ...|+.. ... ..+ ..... ......=+.|+|--||.+||+. ...
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 111111100000 0001100 000 000 00000 0012223569999999999983 333
Q ss_pred CeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEE---cCC
Q 048801 419 TFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTC---SRD 495 (1715)
Q Consensus 419 G~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSg---S~D 495 (1715)
..|+|||.. +.+.....+ -.+--.+++|-|.| ..+++. +.|
T Consensus 222 RkirV~drE-g~Lns~se~---------~~~l~~~LsWkPsg--------------------------s~iA~iq~~~sd 265 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEP---------VEGLQHSLSWKPSG--------------------------SLIAAIQCKTSD 265 (1265)
T ss_pred eeEEEeccc-chhhcccCc---------ccccccceeecCCC--------------------------CeEeeeeecCCC
Confidence 789999987 433211111 12233568888865 455543 355
Q ss_pred CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEE---EecCCeEEEE
Q 048801 496 GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA---AIMDCRICVW 572 (1715)
Q Consensus 496 GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaT---gs~DGtI~IW 572 (1715)
+.|.+|.-.. -.++ .+. .........|..++|+.++..|++ ......|++|
T Consensus 266 ~~IvffErNG-L~hg-------~f~------------------l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 266 SDIVFFERNG-LRHG-------EFV------------------LPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred CcEEEEecCC-cccc-------ccc------------------cCCcccccchheeeecCCCCceeeeecccccceEEEE
Confidence 6788886442 1111 111 111222334899999999999998 5555569999
Q ss_pred ECCCCce--EEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 573 NAVDGSL--VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 573 Dl~sg~~--l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
-+.+-.- ...+.-..... +.|+|-....+..-..+|.+.++|+
T Consensus 320 t~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 320 TTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred EecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 9876432 22222222222 7788754444444445666655553
|
|
| >cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.7e-06 Score=83.85 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=41.9
Q ss_pred ccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCC
Q 048801 1650 NRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKN 1694 (1715)
Q Consensus 1650 ~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~ 1694 (1715)
..+-+||||+||++||+|.||.+.+.+..|+++|+.||++||.++
T Consensus 59 gk~~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 59 GKKFYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred CCeEeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 356689999999999999999999999999999999999999773
|
TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.016 Score=65.55 Aligned_cols=109 Identities=12% Similarity=-0.006 Sum_probs=77.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEE
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIA 334 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLa 334 (1715)
..+++.|+..+.+.--|..+|..+..-. -...|-+-+.- -|.+++.|+..|.+++.++.+|.....+.....-=....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4577788888888888988888765422 12223322222 477899999999999999999988877763322212233
Q ss_pred ecCCCCcceEEEEecCCCcEEEEecCCCCCccee
Q 048801 335 FSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRI 368 (1715)
Q Consensus 335 fSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i 368 (1715)
..+++. ++..|+.|++.+..|..+..++...
T Consensus 101 ~d~~~g---lIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 101 CDFDGG---LIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred EcCCCc---eEEEecCCCcEEEecccccceEEec
Confidence 455665 8999999999999999887765543
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.1e-05 Score=89.49 Aligned_cols=127 Identities=14% Similarity=0.123 Sum_probs=101.7
Q ss_pred CCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC-----ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 544 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG-----SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 544 h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg-----~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
....|.++.|...+.+|+.|+.+|.|.++|++.+ .+...+ -|...|+++..-.+++..|++.+.+|+|++||++
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 4567888889888999999999999999999864 334444 4888899987766567788888999999999998
Q ss_pred CCce---EEEEEcccceEE--EEEEcCCCCEEEEEeCCCeEEEEECCCCccccccccc
Q 048801 619 EGTP---IRIYEIGRFKLV--DGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKYD 671 (1715)
Q Consensus 619 tgk~---l~tl~~h~~~V~--svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~~~~ 671 (1715)
.-++ +..+.+|-..-. -+-+.+....++++++|...+||.+..|......+..
T Consensus 330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred hhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 7666 899988765433 2345677778889999999999999999887665543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0038 Score=72.64 Aligned_cols=194 Identities=12% Similarity=0.038 Sum_probs=117.0
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEEC-CCCCEEEEEeCCCeeEEEECCCCCceEEEeC
Q 048801 248 CAIFDR-SGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVS-SNNTLVASASNDFVIRVWRLPDGLPISVLRG 325 (1715)
Q Consensus 248 ~VafSp-DG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafS-pDg~lLASGS~DGtIrVWDl~tg~~l~~L~g 325 (1715)
+++|.+ +|.++++--..+.|..|+..++.... +.... ...+++. +++.+++ +... .+.++|+.+++....+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v-~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYV-ADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEE-EETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEE-EEcC-ceEEEecCCCcEEEEeec
Confidence 567887 77777777778999999998876543 22222 6777887 6655544 4454 455669988855443332
Q ss_pred -----CCCCeEEEEecCCCCcceEEEEecCC--------CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCC
Q 048801 326 -----HTGAVTAIAFSPRPSAIYQLLSSSDD--------GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392 (1715)
Q Consensus 326 -----H~~~VtsLafSPdg~~~~~LaSgS~D--------GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~ 392 (1715)
.....+.+++.+++. +.++.... |.|..++.. ++......
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~---ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~----------------------- 131 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGN---LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD----------------------- 131 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS----EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-----------------------
T ss_pred cCCCcccCCCceEEEcCCCC---EEEEecCCCccccccccceEEECCC-CeEEEEec-----------------------
Confidence 345678999999987 44444332 446666655 33211110
Q ss_pred CCCCCcceeEEEEccCCCeEE-EecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccc
Q 048801 393 NGLQSHQILCCAYNANGTVFV-TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471 (1715)
Q Consensus 393 ~~~h~~~VtslafSpdG~~La-tGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~ 471 (1715)
.-.....++|+|+++.|. +-+..+.|..|++...... ......+..+....+....+++..++
T Consensus 132 ---~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~g~pDG~~vD~~G----------- 195 (246)
T PF08450_consen 132 ---GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE--LSNRRVFIDFPGGPGYPDGLAVDSDG----------- 195 (246)
T ss_dssp ---EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC--EEEEEEEEE-SSSSCEEEEEEEBTTS-----------
T ss_pred ---CcccccceEECCcchheeecccccceeEEEeccccccc--eeeeeeEEEcCCCCcCCCcceEcCCC-----------
Confidence 012257899999998665 5667888999988642110 00011122222222346677777765
Q ss_pred cccccccccCCcccCceEEEEcCCCeEEEEecC
Q 048801 472 KEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPR 504 (1715)
Q Consensus 472 ~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~ 504 (1715)
++.++....+.|.+++..
T Consensus 196 ---------------~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 196 ---------------NLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp ----------------EEEEEETTTEEEEEETT
T ss_pred ---------------CEEEEEcCCCEEEEECCC
Confidence 567777788899999876
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.6e-05 Score=63.57 Aligned_cols=39 Identities=38% Similarity=0.682 Sum_probs=37.2
Q ss_pred CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 275 AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
|+++.++.+|.+.|++|+|+|++.+|++|+.|++|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0046 Score=73.09 Aligned_cols=210 Identities=15% Similarity=0.107 Sum_probs=130.2
Q ss_pred EEEEEcC-CCCEEEEEeCCCc-EEEEeCCCCcEEEEecCCCCCeE--EEEECCCCCEEEEEe-----CCCeeEEEECC-C
Q 048801 247 YCAIFDR-SGRFVITGSDDRL-VKIWSMETAFCLASCRGHEGDIT--DLAVSSNNTLVASAS-----NDFVIRVWRLP-D 316 (1715)
Q Consensus 247 t~VafSp-DG~~LaTGS~DGt-IrIWDl~tgk~l~tL~gHs~~Vt--sLafSpDg~lLASGS-----~DGtIrVWDl~-t 316 (1715)
..++.+| .+..++.+-.-|+ ..+||..+++..+.+....+.-. .-+||+||++|++.= ..|.|-|||.. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 3567888 5566777766654 77899999998877653322211 357999999999863 35899999998 5
Q ss_pred CCceEEEeCCCCCeEEEEecCCCCcceEEEEecC------------------CCcEEEEecCCCCCcceecCCCCCCCcc
Q 048801 317 GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD------------------DGTCRIWDARYSQYSPRIYLPKPPDAIT 378 (1715)
Q Consensus 317 g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~------------------DGtVrIWDl~tg~~l~~i~~~~~~~~i~ 378 (1715)
...+..+..|.-.-..|.+.|++. .|+++-. +-.|.+.|..+|+++....++
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~---tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp------- 157 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGE---TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP------- 157 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCC---EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC-------
Confidence 677788888877788899999997 4554421 112223333333333222221
Q ss_pred CccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC-------eEEEEeCCCCCccCCCCCceeeeeecCCCCCe
Q 048801 379 GKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT-------FARVWSACKSSVEDSEQPIHELDVLSGHENDV 451 (1715)
Q Consensus 379 g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG-------~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V 451 (1715)
...|...|..+++.++|..++..-..| .|.+++.... +.....+ ......-.+.|
T Consensus 158 --------------~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p---~~~~~~l~~Y~ 219 (305)
T PF07433_consen 158 --------------PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAP---EEQWRRLNGYI 219 (305)
T ss_pred --------------ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCC---hHHHHhhCCce
Confidence 123455689999999987666543332 2333333211 0000000 01123345678
Q ss_pred eEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccC
Q 048801 452 NYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 509 (1715)
Q Consensus 452 ~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~ 509 (1715)
-+|+++.++ ....+|+-..|.+.+||..+++.+
T Consensus 220 gSIa~~~~g-------------------------~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 220 GSIAADRDG-------------------------RLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred EEEEEeCCC-------------------------CEEEEECCCCCEEEEEECCCCCEe
Confidence 899999876 234566778889999999986643
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0029 Score=77.87 Aligned_cols=302 Identities=16% Similarity=0.098 Sum_probs=155.1
Q ss_pred cCCCCEEEEEe---------CCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEE
Q 048801 252 DRSGRFVITGS---------DDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISV 322 (1715)
Q Consensus 252 SpDG~~LaTGS---------~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~ 322 (1715)
|||+++++... ..+.+.|||+.+++....... ...+....|||+|+.||... ++.|.++++.++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 68888887642 346799999999766544333 67888999999999999885 57899999877743332
Q ss_pred Ee-C-------C---------CCCeEEEEecCCCCcceEEEEe-cCCCcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 323 LR-G-------H---------TGAVTAIAFSPRPSAIYQLLSS-SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 323 L~-g-------H---------~~~VtsLafSPdg~~~~~LaSg-S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
.. | - -+.-.++.|||++. +|+.. -.+..|..+.+........
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~---~la~~~~d~~~v~~~~~~~~~~~~~----------------- 138 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSK---YLAFLRFDEREVPEYPLPDYSPPDS----------------- 138 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSS---EEEEEEEE-TTS-EEEEEEESSSTE-----------------
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCC---EEEEEEECCcCCceEEeeccCCccc-----------------
Confidence 21 1 0 11235688999998 44433 3344454443321100000
Q ss_pred CCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee---ecCCCCCeeEEEEccCcc
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV---LSGHENDVNYVQFSGCAV 461 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~---l~gH~~~V~sLafspdg~ 461 (1715)
.-..+..+.+-.-|.-.. .-.+.|+++.+++.. .+.. +..-...+..+.|.+++
T Consensus 139 -----------~yp~~~~~~YPk~G~~np----~v~l~v~~~~~~~~~-------~~~~~~~~~~~~~yl~~v~W~~d~- 195 (353)
T PF00930_consen 139 -----------QYPEVESIRYPKAGDPNP----RVSLFVVDLASGKTT-------ELDPPNSLNPQDYYLTRVGWSPDG- 195 (353)
T ss_dssp -----------SS-EEEEEE--BTTS-------EEEEEEEESSSTCCC-------EE---HHHHTSSEEEEEEEEEETT-
T ss_pred -----------cCCcccccccCCCCCcCC----ceEEEEEECCCCcEE-------EeeeccccCCCccCcccceecCCC-
Confidence 011234444432332211 123566788765431 1111 12334567888898875
Q ss_pred cccccccccccccccccccCCcccCc--eEEEEcCCC---eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCC
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHD--NIVTCSRDG---SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~--~LaSgS~DG---sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 536 (1715)
. .+....++. .+.++|+.++........ .
T Consensus 196 -------------------------~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e---~------------------ 229 (353)
T PF00930_consen 196 -------------------------KRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE---T------------------ 229 (353)
T ss_dssp -------------------------EEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE---E------------------
T ss_pred -------------------------cEEEEEEcccCCCEEEEEEEECCCCceeEEEEe---c------------------
Confidence 2 122223322 244455554332111100 0
Q ss_pred CcccccCCCCCeeEEEeC-CCCC-EEEEEecCC--eEEEEECCCCceEEEEecCCCCeEE-EEEccCCCcEEEEEeCCC-
Q 048801 537 PRQRLLPTPRGVNMIVWS-LDNR-FVLAAIMDC--RICVWNAVDGSLVHSLTGHSASSYV-LDVHPFNPRIAMSAGYDG- 610 (1715)
Q Consensus 537 ~~~~l~~h~~~VtslafS-PDG~-~LaTgs~DG--tI~IWDl~sg~~l~tL~gH~~~V~s-LafSP~dg~lLaSgs~DG- 610 (1715)
..+--.....+.|. +++. +|.....+| .|++++...+. ...+....-.|.. +.+++.++.+..+|..++
T Consensus 230 ----~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p 304 (353)
T PF00930_consen 230 ----SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNP 304 (353)
T ss_dssp ----SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGT
T ss_pred ----CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCC
Confidence 00000112234443 5544 445555666 46666765555 4466655566744 677886677777777633
Q ss_pred ---cEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEe
Q 048801 611 ---RTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSD 649 (1715)
Q Consensus 611 ---tI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs 649 (1715)
.|..-++..+..+..+....+.-..+.|||+|++++...
T Consensus 305 ~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 305 GERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 455556652444455543333336899999999988543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00074 Score=79.91 Aligned_cols=94 Identities=18% Similarity=0.159 Sum_probs=82.5
Q ss_pred EEEEeCCCCcEEEEecCCCCCeEEEEECCCCC-EEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEE
Q 048801 267 VKIWSMETAFCLASCRGHEGDITDLAVSSNNT-LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQL 345 (1715)
Q Consensus 267 IrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~-lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~L 345 (1715)
|++.+..+.+....+.+|...|.+++|||... +|..++.+..|.|.|+++...+..+..+ ..+++++|.-+... +|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h--~I 251 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERH--VI 251 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcc--ee
Confidence 77777777777778888999999999999877 7888999999999999999999888877 88999999988764 78
Q ss_pred EEecCCCcEEEEecCCCC
Q 048801 346 LSSSDDGTCRIWDARYSQ 363 (1715)
Q Consensus 346 aSgS~DGtVrIWDl~tg~ 363 (1715)
..|-..|.|.|||++..+
T Consensus 252 YaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred EEeccCceEEEEEccCCC
Confidence 999999999999998654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00057 Score=86.82 Aligned_cols=150 Identities=17% Similarity=0.195 Sum_probs=108.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEE
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISV 322 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~ 322 (1715)
.+.++|++++ +++|+-|..+|.|++.+... .. .+...|+.. ..+|.+++||+.||+|.|-.+.+.+...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 4567788886 67999999999999999763 33 444445544 56899999999999999999998887777
Q ss_pred EeCCCCCeEEEEecCC--CCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 323 LRGHTGAVTAIAFSPR--PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 323 L~gH~~~VtsLafSPd--g~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
+. ...++.+++++|+ -.....+++||.-| +.++.-+=.. +..........+.|
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg-----------------------nk~~v~l~~~eG~I 163 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG-----------------------NKDSVVLSEGEGPI 163 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc-----------------------CccceeeecCccce
Confidence 66 5578999999998 22233799999988 7776422100 00011122346679
Q ss_pred eEEEEccCCCeEEEecCCCeEEEEeCCCCC
Q 048801 401 LCCAYNANGTVFVTGSSDTFARVWSACKSS 430 (1715)
Q Consensus 401 tslafSpdG~~LatGs~DG~IrVWDl~t~~ 430 (1715)
.++.| .|+++|-++.+| |+|||+.+.+
T Consensus 164 ~~i~W--~g~lIAWand~G-v~vyd~~~~~ 190 (846)
T KOG2066|consen 164 HSIKW--RGNLIAWANDDG-VKVYDTPTRQ 190 (846)
T ss_pred EEEEe--cCcEEEEecCCC-cEEEeccccc
Confidence 99999 477888887655 8999998754
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.7e-05 Score=88.90 Aligned_cols=127 Identities=17% Similarity=0.299 Sum_probs=102.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----cEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCeeEEEECCC
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA-----FCLASCRGHEGDITDLAVSS-NNTLVASASNDFVIRVWRLPD 316 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg-----k~l~tL~gHs~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~t 316 (1715)
.+.|.++.|.-.+++|+.|...|.|.+.|+..+ .+.+.+. |...|+++..-. ++.+|.+.+.+|.|.+||++-
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 456889999998999999999999999999754 3444444 899999998876 788999999999999999986
Q ss_pred CCc---eEEEeCCCCCeEEEEec--CCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCC
Q 048801 317 GLP---ISVLRGHTGAVTAIAFS--PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKP 373 (1715)
Q Consensus 317 g~~---l~~L~gH~~~VtsLafS--Pdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~ 373 (1715)
-++ +....||...-.-+-++ +... .+++++.|...+||.+..+.++.++..+..
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg---~I~s~GdDcytRiWsl~~ghLl~tipf~~s 389 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEG---SIFSVGDDCYTRIWSLDSGHLLCTIPFPYS 389 (425)
T ss_pred hhcccceeeeecccccccccccccccccc---eEEEccCeeEEEEEecccCceeeccCCCCc
Confidence 665 88888986554444333 4444 788999999999999999998887765543
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.074 Score=68.99 Aligned_cols=110 Identities=14% Similarity=0.068 Sum_probs=69.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCCC-CCeE---E-------EEECCCCCEEEEEeCCCeeEEEECCCCCceEEE
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHE-GDIT---D-------LAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs-~~Vt---s-------LafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L 323 (1715)
+..|+.++.++.|.-.|..+|+.+-.+.... ..+. + +++ .+..|+.++.|+.|...|..+|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4577777788899999999999887765311 1111 1 122 2346777888999999999999988765
Q ss_pred eCC--C--CCeEEEEecCCCCcceEEEEec------CCCcEEEEecCCCCCcceecC
Q 048801 324 RGH--T--GAVTAIAFSPRPSAIYQLLSSS------DDGTCRIWDARYSQYSPRIYL 370 (1715)
Q Consensus 324 ~gH--~--~~VtsLafSPdg~~~~~LaSgS------~DGtVrIWDl~tg~~l~~i~~ 370 (1715)
... . ..+++.-..-++ .++.+. .+|.|..+|..+|+.+-.+..
T Consensus 147 ~~~~~~~~~~~tssP~v~~g----~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG----KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ccccccccccccCCcEEECC----EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 421 1 112111111122 344433 368999999999998766544
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.011 Score=69.95 Aligned_cols=253 Identities=14% Similarity=0.149 Sum_probs=144.0
Q ss_pred eEEEEecCCCCcceEEEEecCCCc-EEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC
Q 048801 330 VTAIAFSPRPSAIYQLLSSSDDGT-CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN 408 (1715)
Q Consensus 330 VtsLafSPdg~~~~~LaSgS~DGt-VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd 408 (1715)
...++.+|.... .++.+-.-|+ +.+||..+++....+..+. ...+ .=..+|++|
T Consensus 7 gH~~a~~p~~~~--avafaRRPG~~~~v~D~~~g~~~~~~~a~~-gRHF----------------------yGHg~fs~d 61 (305)
T PF07433_consen 7 GHGVAAHPTRPE--AVAFARRPGTFALVFDCRTGQLLQRLWAPP-GRHF----------------------YGHGVFSPD 61 (305)
T ss_pred ccceeeCCCCCe--EEEEEeCCCcEEEEEEcCCCceeeEEcCCC-CCEE----------------------ecCEEEcCC
Confidence 456778885542 5666666665 5679999988766553321 1111 123679999
Q ss_pred CCeEEEec-----CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcc--cccccccccccccccccccC
Q 048801 409 GTVFVTGS-----SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAV--ASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 409 G~~LatGs-----~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~--as~~~~~~~~~~~~~~~~~~ 481 (1715)
|++|.+.- ..|.|-|||...+ ...+..+..|.-.-..+.+.|++. ....+.+.......-
T Consensus 62 G~~LytTEnd~~~g~G~IgVyd~~~~--------~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR----- 128 (305)
T PF07433_consen 62 GRLLYTTENDYETGRGVIGVYDAARG--------YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGR----- 128 (305)
T ss_pred CCEEEEeccccCCCcEEEEEEECcCC--------cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCc-----
Confidence 99998763 4589999999732 345666666666666677888761 111111100000000
Q ss_pred CcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc--cCCCCCeeEEEeCCCCCE
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL--LPTPRGVNMIVWSLDNRF 559 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l--~~h~~~VtslafSPDG~~ 559 (1715)
..|=....+-++.+.|..+++.+.+ ..+ .-|...|+.+++.++|..
T Consensus 129 -----~kLNl~tM~psL~~ld~~sG~ll~q---------------------------~~Lp~~~~~lSiRHLa~~~~G~V 176 (305)
T PF07433_consen 129 -----AKLNLDTMQPSLVYLDARSGALLEQ---------------------------VELPPDLHQLSIRHLAVDGDGTV 176 (305)
T ss_pred -----eecChhhcCCceEEEecCCCceeee---------------------------eecCccccccceeeEEecCCCcE
Confidence 0011111122222222222221111 112 235668999999999987
Q ss_pred EEEEecCCe-------EEEEECCCCceEEEEe-------cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 048801 560 VLAAIMDCR-------ICVWNAVDGSLVHSLT-------GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI 625 (1715)
Q Consensus 560 LaTgs~DGt-------I~IWDl~sg~~l~tL~-------gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t 625 (1715)
++..-..|. |-+++. ++.+..+. .-.+.+-+|+++.++..+++|+-..|.+.+||..+|+.+..
T Consensus 177 ~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 177 AFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred EEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence 776544432 444443 33233332 23467889999995556777888889999999999999887
Q ss_pred EEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 626 YEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 626 l~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
... ..+..++-.+++ ++++ +..|.+....
T Consensus 255 ~~l--~D~cGva~~~~~-f~~s-sG~G~~~~~~ 283 (305)
T PF07433_consen 255 VPL--PDACGVAPTDDG-FLVS-SGQGQLIRLS 283 (305)
T ss_pred ccc--CceeeeeecCCc-eEEe-CCCccEEEcc
Confidence 753 235556666666 4444 4445544433
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0098 Score=71.14 Aligned_cols=283 Identities=13% Similarity=0.088 Sum_probs=158.5
Q ss_pred CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC----------CCeeEEEECCCCCceEEEeCCCC------
Q 048801 265 RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN----------DFVIRVWRLPDGLPISVLRGHTG------ 328 (1715)
Q Consensus 265 GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~----------DGtIrVWDl~tg~~l~~L~gH~~------ 328 (1715)
+.|.|.|.++++.+..+... -.-.+.++||++.+++++. .-.|.+||..+..+...+.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 47999999999998887643 2334678999998887532 33699999999877765532211
Q ss_pred -CeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc
Q 048801 329 -AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA 407 (1715)
Q Consensus 329 -~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp 407 (1715)
....++++.+++.. ++.-.+---.|.|.|+...+.+..+..|. |.-.-|
T Consensus 95 ~~~~~~~ls~dgk~~-~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-----------------------------C~~iyP 144 (342)
T PF06433_consen 95 PYKNMFALSADGKFL-YVQNFTPATSVTVVDLAAKKVVGEIDTPG-----------------------------CWLIYP 144 (342)
T ss_dssp --GGGEEE-TTSSEE-EEEEESSSEEEEEEETTTTEEEEEEEGTS-----------------------------EEEEEE
T ss_pred ccccceEEccCCcEE-EEEccCCCCeEEEEECCCCceeeeecCCC-----------------------------EEEEEe
Confidence 12335677777632 33334455668888888777766654432 222223
Q ss_pred C-CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCc--c
Q 048801 408 N-GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW--F 484 (1715)
Q Consensus 408 d-G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~--~ 484 (1715)
. .+-|.+-|.||.+.-..+...- +.... + .-.|.++. -+.+.... .
T Consensus 145 ~~~~~F~~lC~DGsl~~v~Ld~~G--------k~~~~---~-----t~~F~~~~---------------dp~f~~~~~~~ 193 (342)
T PF06433_consen 145 SGNRGFSMLCGDGSLLTVTLDADG--------KEAQK---S-----TKVFDPDD---------------DPLFEHPAYSR 193 (342)
T ss_dssp EETTEEEEEETTSCEEEEEETSTS--------SEEEE---E-----EEESSTTT---------------S-B-S--EEET
T ss_pred cCCCceEEEecCCceEEEEECCCC--------CEeEe---e-----ccccCCCC---------------cccccccceEC
Confidence 2 2346677788988888776321 11100 0 00122211 01111100 0
Q ss_pred cCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe
Q 048801 485 CHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI 564 (1715)
Q Consensus 485 ~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs 564 (1715)
....++-.+..|.|+--|+...... +...+.+.. . ....-.-.+++-.-+++++....|++.-
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~~~-----~~~~~~~~t-----------~-~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDSAK-----FGKPWSLLT-----------D-AEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSSEE-----EEEEEESS------------H-HHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred CCCeEEEEecCCEEEEEeccCCccc-----ccCcccccC-----------c-cccccCcCCcceeeeeeccccCeEEEEe
Confidence 1245666778888888777653311 111111000 0 0000001134455678887665555432
Q ss_pred cC---C-------eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEE-eCCCcEEEEECCCCceEEEEEc
Q 048801 565 MD---C-------RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSA-GYDGRTIVWDIWEGTPIRIYEI 628 (1715)
Q Consensus 565 ~D---G-------tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSg-s~DGtI~VWDl~tgk~l~tl~~ 628 (1715)
.. + .|.++|+.+++.+..+..- .++.+|.++.++.-+|++. ..++.|.|||..+|+.++.+..
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 22 1 4899999999999988742 3467899988666566544 5689999999999999998874
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00048 Score=88.02 Aligned_cols=185 Identities=13% Similarity=0.161 Sum_probs=136.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEE
Q 048801 254 SGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAI 333 (1715)
Q Consensus 254 DG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsL 333 (1715)
++..++.|+-...+..+|+.+.+..+...-..+.|+-|.. ++++|.+|...|+|.+-|..+.+.+.++..|++.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4557788888888999999999888877666656666654 68999999999999999999999999999999999987
Q ss_pred EecCCCCcceEEEEecC---------CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEE
Q 048801 334 AFSPRPSAIYQLLSSSD---------DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCA 404 (1715)
Q Consensus 334 afSPdg~~~~~LaSgS~---------DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsla 404 (1715)
....+ .|+++|. |..|+|||++..+.+..+.++..+ .-+.
T Consensus 224 Dv~GN-----lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P--------------------------~flr 272 (1118)
T KOG1275|consen 224 DVQGN-----LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP--------------------------QFLR 272 (1118)
T ss_pred eccCC-----eEEEeecccccccccccchhhhhhhhhhhccCCcccccCc--------------------------hhhh
Confidence 77543 6888764 567899999988766655443322 2344
Q ss_pred EccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCc
Q 048801 405 YNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW 483 (1715)
Q Consensus 405 fSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~ 483 (1715)
|.|.- ..+++++..|...+-|..+.. .|...+.........+..+.+++++
T Consensus 273 f~Psl~t~~~V~S~sGq~q~vd~~~ls-----NP~~~~~~v~p~~s~i~~fDiSsn~----------------------- 324 (1118)
T KOG1275|consen 273 FHPSLTTRLAVTSQSGQFQFVDTATLS-----NPPAGVKMVNPNGSGISAFDISSNG----------------------- 324 (1118)
T ss_pred hcccccceEEEEecccceeeccccccC-----CCccceeEEccCCCcceeEEecCCC-----------------------
Confidence 55532 457777788999888844321 1211222223334458888888876
Q ss_pred ccCceEEEEcCCCeEEEEe
Q 048801 484 FCHDNIVTCSRDGSAIIWI 502 (1715)
Q Consensus 484 ~~~~~LaSgS~DGsIrIWD 502 (1715)
+.++.|..+|.|.+|.
T Consensus 325 ---~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 325 ---DALAFGDHEGHVNLWA 340 (1118)
T ss_pred ---ceEEEecccCcEeeec
Confidence 7999999999999996
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0014 Score=77.74 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=74.0
Q ss_pred eEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCC
Q 048801 309 IRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 309 IrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
|++.+-.+.+....+.+|...|..|+|+|.... ++..++.+..|.|.|+.+...+.....
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~G--Ll~~asl~nkiki~dlet~~~vssy~a------------------ 234 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEG--LLGLASLGNKIKIMDLETSCVVSSYIA------------------ 234 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccc--eeeeeccCceEEEEecccceeeeheec------------------
Confidence 566665666666677889999999999998764 688999999999999998765554433
Q ss_pred CCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCC
Q 048801 389 PSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~ 429 (1715)
...+++++|.-|. .+|.+|...|.|.|||++..
T Consensus 235 --------~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 235 --------YNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred --------cCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 2458999998866 57778888999999999864
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0064 Score=76.84 Aligned_cols=117 Identities=22% Similarity=0.235 Sum_probs=91.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEE-ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCce
Q 048801 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLAS-CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI 320 (1715)
Q Consensus 242 H~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~t-L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l 320 (1715)
|...|.--+++..+.+|+.|+.-|.|.+|+-.+++.... ..+..+.+..+.+|++..++|.|+..|.|.|+-+..+.+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 344455556777899999999999999999887765433 3345566777888999999999999999999988764321
Q ss_pred E-----EE-eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC
Q 048801 321 S-----VL-RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY 361 (1715)
Q Consensus 321 ~-----~L-~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t 361 (1715)
. .+ ..|...|+|++|++++. .|++|...|.|.+-.+.+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~---k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGM---KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEeccccc---EEeecCCCceEEEEEech
Confidence 1 11 23778999999999998 899999999999988775
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.013 Score=75.52 Aligned_cols=103 Identities=14% Similarity=0.147 Sum_probs=68.6
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEE-----------------EeCCCcEEEEECCCCc
Q 048801 559 FVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMS-----------------AGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 559 ~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaS-----------------gs~DGtI~VWDl~tgk 621 (1715)
.+++++.+|.+...|..+|+.+....... ..++.+| +.+++. ...+|.|.-.|+.+|+
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 67778889999999999999988764211 1123333 222221 1246788889999999
Q ss_pred eEEEEEccc--------ceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 622 PIRIYEIGR--------FKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 622 ~l~tl~~h~--------~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
.+....... .+.......-.+..|++++.||.|+.+|..+|+.+-
T Consensus 378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceee
Confidence 887776431 111111112256788889999999999999998763
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00045 Score=88.29 Aligned_cols=148 Identities=18% Similarity=0.304 Sum_probs=113.4
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC---------CCeeEEEECCCCCceEEE
Q 048801 253 RSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN---------DFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 253 pDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~---------DGtIrVWDl~tg~~l~~L 323 (1715)
.+++++.+|...|+|.+-|..+.+.++++..|++.|.++.. .|++|++++. |..|+|||++..+.+.-+
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI 262 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI 262 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCc
Confidence 46789999999999999999999999999999999987766 5888998875 456899999887776666
Q ss_pred eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEE
Q 048801 324 RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCC 403 (1715)
Q Consensus 324 ~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsl 403 (1715)
.-+.++ .-+.|.|.-.. .+++++..|.+.+-|..+-. .+... .......+..+..+
T Consensus 263 ~~~~~P-~flrf~Psl~t--~~~V~S~sGq~q~vd~~~ls--------NP~~~-------------~~~v~p~~s~i~~f 318 (1118)
T KOG1275|consen 263 QFPYGP-QFLRFHPSLTT--RLAVTSQSGQFQFVDTATLS--------NPPAG-------------VKMVNPNGSGISAF 318 (1118)
T ss_pred ccccCc-hhhhhcccccc--eEEEEecccceeeccccccC--------CCccc-------------eeEEccCCCcceeE
Confidence 545444 66788887654 78888889999988843211 01000 00111223448999
Q ss_pred EEccCCCeEEEecCCCeEEEEeC
Q 048801 404 AYNANGTVFVTGSSDTFARVWSA 426 (1715)
Q Consensus 404 afSpdG~~LatGs~DG~IrVWDl 426 (1715)
+++++|+.+|.|..+|.|.+|.-
T Consensus 319 DiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 319 DISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred EecCCCceEEEecccCcEeeecC
Confidence 99999999999999999999973
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.019 Score=76.35 Aligned_cols=265 Identities=11% Similarity=0.100 Sum_probs=137.9
Q ss_pred CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEc
Q 048801 327 TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYN 406 (1715)
Q Consensus 327 ~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafS 406 (1715)
.+.|.++.|..+.. .++.+...|.|.+-|..+...... +.-...|.+++|+
T Consensus 68 d~~i~s~~fl~d~~---~i~v~~~~G~iilvd~et~~~eiv--------------------------g~vd~GI~aaswS 118 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTN---SICVITALGDIILVDPETLELEIV--------------------------GNVDNGISAASWS 118 (1265)
T ss_pred CcceEEEEEecccc---eEEEEecCCcEEEEcccccceeee--------------------------eeccCceEEEeec
Confidence 36899999999887 677778888899888765542211 1124569999999
Q ss_pred cCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc--c---cccccc--------c
Q 048801 407 ANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS--A---MSDAFK--------E 473 (1715)
Q Consensus 407 pdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~--~---~~~~~~--------~ 473 (1715)
||+.+++..+..+++.+-.-. -.... .++ +..-....+..-.+.|-......+. + ...... .
T Consensus 119 ~Dee~l~liT~~~tll~mT~~-f~~i~-E~~---L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~ 193 (1265)
T KOG1920|consen 119 PDEELLALITGRQTLLFMTKD-FEPIA-EKP---LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIE 193 (1265)
T ss_pred CCCcEEEEEeCCcEEEEEecc-ccchh-ccc---cccccccccccceecccccceeeecchhhhcccccccccccccchh
Confidence 999999998887777654321 10000 000 0000000011111212110000000 0 000000 0
Q ss_pred cccccccCCccc-CceEEEE----cCC-CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCC
Q 048801 474 ENVPKFKNSWFC-HDNIVTC----SRD-GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG 547 (1715)
Q Consensus 474 ~~~~~~~~s~~~-~~~LaSg----S~D-GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~ 547 (1715)
....+..-.|-+ +.++++. ..+ ..|++||-. +.... .-....+-
T Consensus 194 ~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns-----------------------------~se~~~~l 243 (1265)
T KOG1920|consen 194 QDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNS-----------------------------TSEPVEGL 243 (1265)
T ss_pred hccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhc-----------------------------ccCccccc
Confidence 000011122322 2455552 233 789999876 22100 00111223
Q ss_pred eeEEEeCCCCCEEEEEe---cCCeEEEEECCCCceEEEE----ecCCCCeEEEEEccCCCcEEEE---EeCCCcEEEEEC
Q 048801 548 VNMIVWSLDNRFVLAAI---MDCRICVWNAVDGSLVHSL----TGHSASSYVLDVHPFNPRIAMS---AGYDGRTIVWDI 617 (1715)
Q Consensus 548 VtslafSPDG~~LaTgs---~DGtI~IWDl~sg~~l~tL----~gH~~~V~sLafSP~dg~lLaS---gs~DGtI~VWDl 617 (1715)
-.+++|-|.|.++++-. .|+.|.+|.- +|-....| ......|..++|+. ++.+|+. ......|++|-+
T Consensus 244 ~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 244 QHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred ccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecC-CCCceeeeecccccceEEEEEe
Confidence 45789999999998853 4567888874 44332222 22334489999998 6677766 444555999998
Q ss_pred CCCceE--EEEEcccceEEEEEEcCCC-CEEEEEeCCCeEEEEEC
Q 048801 618 WEGTPI--RIYEIGRFKLVDGKFSPDG-TSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 618 ~tgk~l--~tl~~h~~~V~svafSPDG-~~LAsgs~DG~I~IWdl 659 (1715)
.+..-. +.+....... +.|+|.- ..|.+-..+|.+.++++
T Consensus 322 ~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 322 GNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred cCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 664321 2222112222 7888843 23444446677666665
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0019 Score=81.57 Aligned_cols=107 Identities=15% Similarity=0.172 Sum_probs=86.1
Q ss_pred EEEcCCCCEEEEEe----CCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe
Q 048801 249 AIFDRSGRFVITGS----DDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 249 VafSpDG~~LaTGS----~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~ 324 (1715)
..|+|...++|.++ ..|.|.||- ++|++...... .-.+++++|+|..-.|+.|-.-|.+.||...+.+.-....
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~ 98 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE 98 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence 34788888888776 358899984 66765443321 2235679999999999999999999999988777666667
Q ss_pred CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecC
Q 048801 325 GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 325 gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
.|..+|..+.|+++|. .|+++..-|.|.+|...
T Consensus 99 th~a~i~~l~wS~~G~---~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 99 THPAPIQGLDWSHDGT---VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCCCCceeEEecCCCC---eEEEcCCCceeEEEEee
Confidence 8999999999999998 89999999999999765
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0054 Score=78.77 Aligned_cols=201 Identities=9% Similarity=0.133 Sum_probs=125.4
Q ss_pred EEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCC-eeEEEEccCcccccccccccccccccccccCC
Q 048801 404 AYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEND-VNYVQFSGCAVASRSAMSDAFKEENVPKFKNS 482 (1715)
Q Consensus 404 afSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~-V~sLafspdg~as~~~~~~~~~~~~~~~~~~s 482 (1715)
+|++.+..+|.|+.+|.|.+++-. ...+..+.++... |..+.... .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s----------~~~~~~fqa~~~siv~~L~~~~-~---------------------- 76 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS----------FQLIRGFQAYEQSIVQFLYILN-K---------------------- 76 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc----------ceeeehheecchhhhhHhhccc-C----------------------
Confidence 467788899999999999888754 2334555555555 33332222 1
Q ss_pred cccCceEEEEcCCC-----eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc--ccCCCCCeeEEEeCC
Q 048801 483 WFCHDNIVTCSRDG-----SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR--LLPTPRGVNMIVWSL 555 (1715)
Q Consensus 483 ~~~~~~LaSgS~DG-----sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~--l~~h~~~VtslafSP 555 (1715)
+..|++.+.|+ .++||++........ .... ....+.. ....+.++.+++++.
T Consensus 77 ---~~~L~sv~Ed~~~np~llkiw~lek~~~n~s-P~c~-----------------~~~ri~~~~np~~~~p~s~l~Vs~ 135 (933)
T KOG2114|consen 77 ---QNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS-PQCL-----------------YEHRIFTIKNPTNPSPASSLAVSE 135 (933)
T ss_pred ---ceEEEEEeecCCCCceEEEEecccccCCCCC-ccee-----------------eeeeeeccCCCCCCCcceEEEEEc
Confidence 35777777665 489999874320000 0000 0000001 112356788999999
Q ss_pred CCCEEEEEecCCeEEEEECCC----CceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce--EEEEEcc
Q 048801 556 DNRFVLAAIMDCRICVWNAVD----GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTP--IRIYEIG 629 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl~s----g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~--l~tl~~h 629 (1715)
+-+.+|+|-.+|.|..+.-.- |....-.....++|+++++..++...+.+ ..-..|.+|.+. |+. +..+..+
T Consensus 136 ~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv-~Tt~~V~~y~l~-gr~p~~~~ld~~ 213 (933)
T KOG2114|consen 136 DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFV-ATTEQVMLYSLS-GRTPSLKVLDNN 213 (933)
T ss_pred cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEE-EecceeEEEEec-CCCcceeeeccC
Confidence 999999999999999885321 22222223446789999998744442222 234579999987 544 4557767
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 630 RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 630 ~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
...+.|..|++....+++++. ..|++|+...
T Consensus 214 G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~ 244 (933)
T KOG2114|consen 214 GISLNCSSFSDGTYQFICAGS-EFLYFYDSDG 244 (933)
T ss_pred CccceeeecCCCCccEEEecC-ceEEEEcCCC
Confidence 777888888887665666654 5789998764
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0018 Score=82.57 Aligned_cols=145 Identities=18% Similarity=0.174 Sum_probs=103.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCC-----CCEEEEEeCCCeeEEEECC--CCCceEEEeCC
Q 048801 254 SGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN-----NTLVASASNDFVIRVWRLP--DGLPISVLRGH 326 (1715)
Q Consensus 254 DG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpD-----g~lLASGS~DGtIrVWDl~--tg~~l~~L~gH 326 (1715)
+|.+++|||.||.|.|-.+-+.+...++. ...++.+|+++|+ .+.+++|+.-| +.++.-. ..+....+...
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~ 159 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG 159 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence 59999999999999999999888877766 4568999999998 56899999988 7776522 11222246667
Q ss_pred CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEc
Q 048801 327 TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYN 406 (1715)
Q Consensus 327 ~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafS 406 (1715)
.++|.++.|..+ +++-++.+| |+|||+.+++.+..+..+..... ...--..+.|.
T Consensus 160 eG~I~~i~W~g~-----lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R-------------------~e~fpphl~W~ 214 (846)
T KOG2066|consen 160 EGPIHSIKWRGN-----LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVR-------------------PELFPPHLHWQ 214 (846)
T ss_pred ccceEEEEecCc-----EEEEecCCC-cEEEeccccceeeccCCCCCCCC-------------------cccCCCceEec
Confidence 789999999864 677777777 99999998876655544331100 01113456777
Q ss_pred cCCCeEEEecCCCeEEEEeCC
Q 048801 407 ANGTVFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 407 pdG~~LatGs~DG~IrVWDl~ 427 (1715)
++.+ |+.|- ..+|+|..++
T Consensus 215 ~~~~-LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 215 DEDR-LVIGW-GDSVKICSIK 233 (846)
T ss_pred CCCe-EEEec-CCeEEEEEEe
Confidence 6654 55564 4568888876
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.033 Score=66.82 Aligned_cols=278 Identities=13% Similarity=0.146 Sum_probs=155.4
Q ss_pred CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEE--------ecCCCcEEEEecCCCCCcceecCCCCCCCcc
Q 048801 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLS--------SSDDGTCRIWDARYSQYSPRIYLPKPPDAIT 378 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaS--------gS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~ 378 (1715)
+.|.|.|.++++.+..+.. +-.-.+..+|+++.+ +.++ |-..-.|.+||..+......+.+|..+....
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~-y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTI-YVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEE-EEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEE-EEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 4799999999988877753 233456789998843 2222 2234568999999887777666654311110
Q ss_pred CccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEe--cCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEE
Q 048801 379 GKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG--SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF 456 (1715)
Q Consensus 379 g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatG--s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLaf 456 (1715)
......++++.||+++.+. +-...|.|.|+...+. +..+.-. -|...
T Consensus 94 ------------------~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kv---------v~ei~~P----GC~~i 142 (342)
T PF06433_consen 94 ------------------VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKV---------VGEIDTP----GCWLI 142 (342)
T ss_dssp ------------------S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEE---------EEEEEGT----SEEEE
T ss_pred ------------------cccccceEEccCCcEEEEEccCCCCeEEEEECCCCce---------eeeecCC----CEEEE
Confidence 1123446788888877654 2345677778765432 2211110 12222
Q ss_pred ccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCC
Q 048801 457 SGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536 (1715)
Q Consensus 457 spdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 536 (1715)
.|.+ ...|.+.+.||++....+...-.... .....+..
T Consensus 143 yP~~-------------------------~~~F~~lC~DGsl~~v~Ld~~Gk~~~--~~t~~F~~--------------- 180 (342)
T PF06433_consen 143 YPSG-------------------------NRGFSMLCGDGSLLTVTLDADGKEAQ--KSTKVFDP--------------- 180 (342)
T ss_dssp EEEE-------------------------TTEEEEEETTSCEEEEEETSTSSEEE--EEEEESST---------------
T ss_pred EecC-------------------------CCceEEEecCCceEEEEECCCCCEeE--eeccccCC---------------
Confidence 2322 35688888999999888873221110 00111110
Q ss_pred CcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceE--EEEec----------CCCCeEEEEEccCCCcEEE
Q 048801 537 PRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLV--HSLTG----------HSASSYVLDVHPFNPRIAM 604 (1715)
Q Consensus 537 ~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l--~tL~g----------H~~~V~sLafSP~dg~lLa 604 (1715)
.....+..-+++..+..++.-+.+|.|+--|+...... ..+.- -.+.-.-+++++..+++.+
T Consensus 181 ------~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 181 ------DDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp ------TTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ------CCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 00111223344445555555777888888777554321 12210 0122345777775555544
Q ss_pred EE--eCCC-------cEEEEECCCCceEEEEEcccceEEEEEEcCCCC-EEEEE-eCCCeEEEEECCCCccccc
Q 048801 605 SA--GYDG-------RTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGT-SIVLS-DDVGQIYLLNTGQGESQKD 667 (1715)
Q Consensus 605 Sg--s~DG-------tI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~-~LAsg-s~DG~I~IWdl~tGe~~k~ 667 (1715)
.- +.+| .|.++|+.+++.+..+.. ..++.++.++.|.+ +|++. ..+|.|.|||..+|+.+..
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 32 2222 478889999999999984 34677999999877 55444 4579999999999976643
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.058 Score=67.81 Aligned_cols=115 Identities=14% Similarity=0.213 Sum_probs=80.4
Q ss_pred CCCeeEEEeCC-CCCEEEEE----ecCCe----EEEEECCCCceEE--EE-ecCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 048801 545 PRGVNMIVWSL-DNRFVLAA----IMDCR----ICVWNAVDGSLVH--SL-TGHSASSYVLDVHPFNPRIAMSAGYDGRT 612 (1715)
Q Consensus 545 ~~~VtslafSP-DG~~LaTg----s~DGt----I~IWDl~sg~~l~--tL-~gH~~~V~sLafSP~dg~lLaSgs~DGtI 612 (1715)
+....++.||. +...+.+. +.+|. -++|+....+.-. .. -.....|.+++++| +...++.|+.||.|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 33445667775 33444432 22332 4566665443221 11 25677899999999 67778889999999
Q ss_pred EEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 613 IVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 613 ~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
.+||...+... +....-..+.++|+|+|..+++|+..|.|.+||++-+
T Consensus 284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 99998766433 3234456788999999999999999999999998765
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.012 Score=75.89 Aligned_cols=224 Identities=11% Similarity=0.087 Sum_probs=131.9
Q ss_pred CeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCC-eEEEEecCCCCcceEEEEecCCC-----cEEEEecC
Q 048801 287 DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGA-VTAIAFSPRPSAIYQLLSSSDDG-----TCRIWDAR 360 (1715)
Q Consensus 287 ~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~-VtsLafSPdg~~~~~LaSgS~DG-----tVrIWDl~ 360 (1715)
.|+ +|++.+..+|.|+.+|.|.+.+ ..-+.+..+..+... |+.+....... +|++.+.|+ .|+||++.
T Consensus 27 ~is--c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~---~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AIS--CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQN---FLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred cee--EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCce---EEEEEeecCCCCceEEEEeccc
Confidence 454 4677888999999999887776 233444677777766 44444443333 677776664 48999987
Q ss_pred CCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCcee
Q 048801 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHE 440 (1715)
Q Consensus 361 tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~ 440 (1715)
..+... ++..+..+.. ..........++.+++.+.+-+.+|+|-.+|.|..+.-.-.. .....
T Consensus 101 k~~~n~------sP~c~~~~ri------~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R-----Drgsr 163 (933)
T KOG2114|consen 101 KVDKNN------SPQCLYEHRI------FTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR-----DRGSR 163 (933)
T ss_pred ccCCCC------Ccceeeeeee------eccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh-----ccccc
Confidence 542111 0000000000 000111235668899999999999999999999988643211 01112
Q ss_pred eeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccccc
Q 048801 441 LDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYH 520 (1715)
Q Consensus 441 l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~ 520 (1715)
.........+|+.+++..++ ..++-+..-..|.+|.+.. +
T Consensus 164 ~~~~~~~~~pITgL~~~~d~--------------------------~s~lFv~Tt~~V~~y~l~g-r------------- 203 (933)
T KOG2114|consen 164 QDYSHRGKEPITGLALRSDG--------------------------KSVLFVATTEQVMLYSLSG-R------------- 203 (933)
T ss_pred eeeeccCCCCceeeEEecCC--------------------------ceeEEEEecceeEEEEecC-C-------------
Confidence 22233345689999998776 2212222334677777652 1
Q ss_pred ccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe-cCCC
Q 048801 521 LKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT-GHSA 588 (1715)
Q Consensus 521 l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~-gH~~ 588 (1715)
+.....+..|...++|..+++....+++|+ +.-|.+|+.....+...+. ||..
T Consensus 204 --------------~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 204 --------------TPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred --------------CcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeE
Confidence 111223455677889999987665455554 4469999987655555554 5543
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.07 Score=65.14 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=45.3
Q ss_pred eCCCCcEEEEecCCCCCeE-----EEEECCCCCEEEEEeC-CC--eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcc
Q 048801 271 SMETAFCLASCRGHEGDIT-----DLAVSSNNTLVASASN-DF--VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAI 342 (1715)
Q Consensus 271 Dl~tgk~l~tL~gHs~~Vt-----sLafSpDg~lLASGS~-DG--tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~ 342 (1715)
|..||..+..|......-. .=+|.+||+.|+.++. || .+.+.|+.+++..+...+-........++++++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~-- 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDR-- 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSS--
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCC--
Confidence 5678877777764433222 2356788876655544 54 567778888875554443223233566778776
Q ss_pred eEEEEecCCCcEEEEecCCCCCccee
Q 048801 343 YQLLSSSDDGTCRIWDARYSQYSPRI 368 (1715)
Q Consensus 343 ~~LaSgS~DGtVrIWDl~tg~~l~~i 368 (1715)
.++-......|+-.|+.+.+....+
T Consensus 94 -~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 94 -ALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp -EEEEEETTTEEEEEETTT--EEEEE
T ss_pred -eEEEEECCCeEEEEECCcCcEEEEE
Confidence 4443334467888898887654333
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.12 Score=65.20 Aligned_cols=53 Identities=8% Similarity=-0.023 Sum_probs=39.5
Q ss_pred CCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecC-CCCeEEEEEcc
Q 048801 545 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH-SASSYVLDVHP 597 (1715)
Q Consensus 545 ~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH-~~~V~sLafSP 597 (1715)
.+++..+++||+|++||.-..+|.+.|....-.+.+..+... ......+.|+-
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG 269 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG 269 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC
Confidence 457999999999999999999999999887655555555433 33445666654
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0014 Score=82.86 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~ 315 (1715)
+++++|+|..-.||.|-.-|.+.+|...+.+.......|..+|..+.||++|..|+++..-|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 4569999999899999889999999998877777777899999999999999999999999999999875
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.058 Score=61.30 Aligned_cols=105 Identities=12% Similarity=0.021 Sum_probs=74.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEE
Q 048801 254 SGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAI 333 (1715)
Q Consensus 254 DG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsL 333 (1715)
-|.+++.|...|.+.+.++.+|.....+..-..-=......+++.++..|+.|++.+..|..+..++...+...+...+-
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 36789999999999999999997777665332221233456789999999999999999999988888877554444555
Q ss_pred EecCCCCcceEEEEecCCCcEEEEecCC
Q 048801 334 AFSPRPSAIYQLLSSSDDGTCRIWDARY 361 (1715)
Q Consensus 334 afSPdg~~~~~LaSgS~DGtVrIWDl~t 361 (1715)
++.|-.. .|..+...|.|.--..+.
T Consensus 142 ~i~~g~~---sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 142 VIAPGDG---SLYAAITAGAVLAVTKNP 166 (354)
T ss_pred eecCCCc---eEEEEeccceEEEEccCC
Confidence 6666333 345555556555444443
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.025 Score=69.74 Aligned_cols=306 Identities=13% Similarity=0.138 Sum_probs=158.4
Q ss_pred CCCCCEEEEEe---------CCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCC
Q 048801 294 SSNNTLVASAS---------NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQY 364 (1715)
Q Consensus 294 SpDg~lLASGS---------~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~ 364 (1715)
|||+++++... ..+.+.|||+.+++...... ....+....|+|++. .++... ++.|.++++.++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~---~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGK---YIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSST---EEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCC---eeEEEe-cCceEEEECCCCCe
Confidence 67888777642 24679999999876443333 367788999999987 444443 57899999877743
Q ss_pred cceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-CCeEEEEeCCCCCccCCCCCceeeee
Q 048801 365 SPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-DTFARVWSACKSSVEDSEQPIHELDV 443 (1715)
Q Consensus 365 l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-DG~IrVWDl~t~~~~~~~~~~~~l~~ 443 (1715)
..+..........|.... ..... --..-..+-|||||+.||.... +..|..+.+..
T Consensus 76 -~~lT~dg~~~i~nG~~dw------vyeEE-v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~--------------- 132 (353)
T PF00930_consen 76 -TQLTTDGEPGIYNGVPDW------VYEEE-VFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD--------------- 132 (353)
T ss_dssp -EESES--TTTEEESB--H------HHHHH-TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE---------------
T ss_pred -EEeccccceeEEcCccce------ecccc-ccccccceEECCCCCEEEEEEECCcCCceEEeec---------------
Confidence 233332211111111000 00000 0011256889999998887643 33344443321
Q ss_pred ecCCC---CCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC--eEEEEecCCCccCccccccccc
Q 048801 444 LSGHE---NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG--SAIIWIPRSRRSHGKVGRWTRA 518 (1715)
Q Consensus 444 l~gH~---~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG--sIrIWDl~t~~~~~~~~~~~~~ 518 (1715)
..... ..+..+.+--- |...- .+.|+|+.+++....
T Consensus 133 ~~~~~~~yp~~~~~~YPk~--------------------------------G~~np~v~l~v~~~~~~~~~~~------- 173 (353)
T PF00930_consen 133 YSPPDSQYPEVESIRYPKA--------------------------------GDPNPRVSLFVVDLASGKTTEL------- 173 (353)
T ss_dssp ESSSTESS-EEEEEE--BT--------------------------------TS---EEEEEEEESSSTCCCEE-------
T ss_pred cCCccccCCcccccccCCC--------------------------------CCcCCceEEEEEECCCCcEEEe-------
Confidence 00110 12222322111 11111 345677765442100
Q ss_pred ccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC-----CeEEEEECCCCceEEEEec-CCCC---
Q 048801 519 YHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD-----CRICVWNAVDGSLVHSLTG-HSAS--- 589 (1715)
Q Consensus 519 ~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D-----GtI~IWDl~sg~~l~tL~g-H~~~--- 589 (1715)
...........-+..+.|++++..|++.-.+ ..+.++|..++.....+.. ..+.
T Consensus 174 -----------------~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~ 236 (353)
T PF00930_consen 174 -----------------DPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV 236 (353)
T ss_dssp --------------------HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS
T ss_pred -----------------eeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee
Confidence 0000112234568899999999944443322 2477788888766544432 2222
Q ss_pred eEEEEEc-cCCCcEEEEEeCCCcEEE--EECCCCceEEEEEcccceEEE-EEEcCCCCEEE-EEeCC----CeEEEEECC
Q 048801 590 SYVLDVH-PFNPRIAMSAGYDGRTIV--WDIWEGTPIRIYEIGRFKLVD-GKFSPDGTSIV-LSDDV----GQIYLLNTG 660 (1715)
Q Consensus 590 V~sLafS-P~dg~lLaSgs~DGtI~V--WDl~tgk~l~tl~~h~~~V~s-vafSPDG~~LA-sgs~D----G~I~IWdl~ 660 (1715)
...+.|. +++..+|.....||--+| .+...+. ...+..+...|.. +.|++++..|. ++..+ -.|+..++.
T Consensus 237 ~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 237 YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred ecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 2345554 667777777778885444 5554444 4455556666755 68899988776 44432 267777777
Q ss_pred -CCcccc----ccc-cceeecCCCccEEEc
Q 048801 661 -QGESQK----DAK-YDQFFLGDYRPLIRD 684 (1715)
Q Consensus 661 -tGe~~k----~~~-~~~~fs~D~r~L~~d 684 (1715)
.|+... ... +...|+||++.++..
T Consensus 316 ~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 316 SGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp ETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred CCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 554432 111 367888888877644
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.035 Score=71.28 Aligned_cols=105 Identities=13% Similarity=0.077 Sum_probs=77.8
Q ss_pred eCCCCCEEEEEecCCeEEEEECCC----C-ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce-----
Q 048801 553 WSLDNRFVLAAIMDCRICVWNAVD----G-SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTP----- 622 (1715)
Q Consensus 553 fSPDG~~LaTgs~DGtI~IWDl~s----g-~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~----- 622 (1715)
+.++|++...+ ++.|.+.|..+ + ..+..+. -......+.++|++.++++++..+.+|-|.|+.+.+.
T Consensus 284 ~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 44578877763 67899999988 3 4444443 3444578999997777777788899999999987552
Q ss_pred -------EEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 623 -------IRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 623 -------l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
+.....+.++ ...+|.++|....+-.-|.+|..|++..
T Consensus 361 ~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 4444444433 4578999999888888999999999865
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.084 Score=65.78 Aligned_cols=90 Identities=16% Similarity=0.153 Sum_probs=64.5
Q ss_pred ccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEE--ccCC----------------C
Q 048801 539 QRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDV--HPFN----------------P 600 (1715)
Q Consensus 539 ~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLaf--SP~d----------------g 600 (1715)
..+......+.+|+.+|++++.|+...=|+|.++|+.++..++.++|..+.-..-.. ...+ -
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceE
Confidence 344455567899999999999999888899999999999988888876553211110 0100 0
Q ss_pred cEEEEEeCCCcEEEEECCCCceEEEEEc
Q 048801 601 RIAMSAGYDGRTIVWDIWEGTPIRIYEI 628 (1715)
Q Consensus 601 ~lLaSgs~DGtI~VWDl~tgk~l~tl~~ 628 (1715)
.+++-+-.-|.|-||.+.+|..+..+..
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 2344466789999999999988877764
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00044 Score=85.61 Aligned_cols=198 Identities=15% Similarity=0.202 Sum_probs=128.6
Q ss_pred CeEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCcE--EEEecCCCCCeEEEEECC-CCCEEEEEe----CCCeeEEEECC
Q 048801 245 AVYCAIFDR--SGRFVITGSDDRLVKIWSMETAFC--LASCRGHEGDITDLAVSS-NNTLVASAS----NDFVIRVWRLP 315 (1715)
Q Consensus 245 ~Vt~VafSp--DG~~LaTGS~DGtIrIWDl~tgk~--l~tL~gHs~~VtsLafSp-Dg~lLASGS----~DGtIrVWDl~ 315 (1715)
.+.|+++.- +..+++.|..+|.|-+-.+....- .....+|....++++|++ |...||+|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 455666543 335788898999999988754322 234567888999999998 667888873 36789999998
Q ss_pred CC--Cce--EEEeC-CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCC
Q 048801 316 DG--LPI--SVLRG-HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPS 390 (1715)
Q Consensus 316 tg--~~l--~~L~g-H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~ 390 (1715)
++ .+. ..+.+ -.....+++|..+.+ ++++|.....+.++|++.......
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~k---lvlaGm~sr~~~ifdlRqs~~~~~----------------------- 191 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTK---LVLAGMTSRSVHIFDLRQSLDSVS----------------------- 191 (783)
T ss_pred cccCCCccccccccccccCccccccccCcc---hhhcccccchhhhhhhhhhhhhhh-----------------------
Confidence 76 222 12222 334566888887766 788888888999999873221100
Q ss_pred CCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeC-CCCCccCCCCCceeeeeecCCCC----CeeEEEEccCccccc
Q 048801 391 SSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSA-CKSSVEDSEQPIHELDVLSGHEN----DVNYVQFSGCAVASR 464 (1715)
Q Consensus 391 ~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl-~t~~~~~~~~~~~~l~~l~gH~~----~V~sLafspdg~as~ 464 (1715)
......+..+.+.| .+.++++-. ||.|.+||. .+- ..++..+..... .+..++|+|..
T Consensus 192 ---svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rni--------enpl~~i~~~~N~~~~~l~~~aycPtr---- 255 (783)
T KOG1008|consen 192 ---SVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNI--------ENPLQIILRNENKKPKQLFALAYCPTR---- 255 (783)
T ss_pred ---hhhhhhcccceecCCCCCceeccc-cCceeeccchhhh--------ccHHHHHhhCCCCcccceeeEEeccCC----
Confidence 01123366777888 777887665 999999994 221 112222222222 48889999854
Q ss_pred ccccccccccccccccCCcccCceEEEEcC-CCeEEEEecCC
Q 048801 465 SAMSDAFKEENVPKFKNSWFCHDNIVTCSR-DGSAIIWIPRS 505 (1715)
Q Consensus 465 ~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~-DGsIrIWDl~t 505 (1715)
...+++... .++|+++++..
T Consensus 256 ---------------------tglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 256 ---------------------TGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ---------------------cchhhhhccCcceEEEecccc
Confidence 245666554 47899998863
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.054 Score=69.60 Aligned_cols=106 Identities=12% Similarity=0.088 Sum_probs=71.2
Q ss_pred CCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCce------------EEEEecCCCCeEEEEEccCCCcEEEEEeCC
Q 048801 543 PTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSL------------VHSLTGHSASSYVLDVHPFNPRIAMSAGYD 609 (1715)
Q Consensus 543 ~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~~------------l~tL~gH~~~V~sLafSP~dg~lLaSgs~D 609 (1715)
.-......+.+||||+++++++ .+.+|.|.|+.+.+. +....--.++ ...+|.+ ++....|-..|
T Consensus 318 PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg-~G~aytslf~d 395 (635)
T PRK02888 318 PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDG-RGNAYTTLFLD 395 (635)
T ss_pred ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECC-CCCEEEeEeec
Confidence 3455677899999999987765 488999999987552 3333322333 4567887 55677788889
Q ss_pred CcEEEEECCC----------CceEEEEEcccceEE-----EEEEcCCCCEEEEEeC
Q 048801 610 GRTIVWDIWE----------GTPIRIYEIGRFKLV-----DGKFSPDGTSIVLSDD 650 (1715)
Q Consensus 610 GtI~VWDl~t----------gk~l~tl~~h~~~V~-----svafSPDG~~LAsgs~ 650 (1715)
..|..|++.+ ...+..+..|..+.. .=.-.|||++|++...
T Consensus 396 sqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 396 SQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred ceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 9999999876 234444544432211 1134789999998754
|
|
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
Probab=97.17 E-value=9.3e-05 Score=96.81 Aligned_cols=71 Identities=21% Similarity=0.265 Sum_probs=63.5
Q ss_pred hccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1645 KLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1645 ~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
-.+|+-....|++++||+.||+|+||..+..|+.|+..+++||++||.+.++|+.+++.+.+.|.+++.+|
T Consensus 24 ~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 94 (640)
T KOG1474|consen 24 LPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLEKLFPKKLRSM 94 (640)
T ss_pred chhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccchhhcccccccc
Confidence 45556666667788999999999999999999999999999999999999999999999999998877654
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.041 Score=68.57 Aligned_cols=299 Identities=13% Similarity=0.106 Sum_probs=139.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC--------
Q 048801 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD-------- 316 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t-------- 316 (1715)
.|+++.|.++..-|+.|...|.|.||.+...+... ..-...-..+.+.+- ...++.-.|-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58999999999999999999999999876543322 000011111111110 00011112222221
Q ss_pred C-CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCC
Q 048801 317 G-LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL 395 (1715)
Q Consensus 317 g-~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~ 395 (1715)
| .+...+....+.|++++.+.-| +++.|..+|.|.|.|++....+....+.. ......
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG----Fvaigy~~G~l~viD~RGPavI~~~~i~~-----------------~~~~~~ 133 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG----FVAIGYESGSLVVIDLRGPAVIYNENIRE-----------------SFLSKS 133 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS----EEEEEETTSEEEEEETTTTEEEEEEEGGG-------------------T-SS
T ss_pred ccCchhheeccCCcEeEEecCCCc----EEEEEecCCcEEEEECCCCeEEeeccccc-----------------cccccc
Confidence 1 2444555668999999998766 89999999999999998777655432211 011122
Q ss_pred CCcceeEEEEcc-----CC---CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccc
Q 048801 396 QSHQILCCAYNA-----NG---TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAM 467 (1715)
Q Consensus 396 h~~~VtslafSp-----dG---~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~ 467 (1715)
....|+++.|.. |+ -.+++|+..|.+.+|.+.-... .............+.++|..|
T Consensus 134 ~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~--g~f~v~~~~~~~~~~~~i~~I------------- 198 (395)
T PF08596_consen 134 SSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSN--GRFSVQFAGATTNHDSPILSI------------- 198 (395)
T ss_dssp ----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GG--G-EEEEEEEEE--SS----EE-------------
T ss_pred cccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCC--CceEEEEeeccccCCCceEEE-------------
Confidence 345578888863 33 3688889999999998741000 000000001111112222211
Q ss_pred cccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCC
Q 048801 468 SDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG 547 (1715)
Q Consensus 468 ~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~ 547 (1715)
...+..++......... .+. ......
T Consensus 199 -------------------------------~~i~~~~G~~a~At~~~----------------------~~~-l~~g~~ 224 (395)
T PF08596_consen 199 -------------------------------IPINADTGESALATISA----------------------MQG-LSKGIS 224 (395)
T ss_dssp -------------------------------EEEETTT--B-B-BHHH----------------------HHG-GGGT--
T ss_pred -------------------------------EEEECCCCCcccCchhH----------------------hhc-cccCCC
Confidence 22232222210000000 000 000001
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEc----cCCCcEEEEEeCCCcEEEEECCCCceE
Q 048801 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVH----PFNPRIAMSAGYDGRTIVWDIWEGTPI 623 (1715)
Q Consensus 548 VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafS----P~dg~lLaSgs~DGtI~VWDl~tgk~l 623 (1715)
| .| +++ ...+..|+|+...+.+..+......-....+.+- -..+..|++-..+|.|+++.+-.-+.+
T Consensus 225 i-------~g-~vV-vvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 225 I-------PG-YVV-VVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp ---------E-EEE-EE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred c-------Cc-EEE-EEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence 1 11 333 3446789999998887766555322223333442 124567888889999999999998888
Q ss_pred EEEEccc----ceEEEEEEcCCCCEEEEEeC
Q 048801 624 RIYEIGR----FKLVDGKFSPDGTSIVLSDD 650 (1715)
Q Consensus 624 ~tl~~h~----~~V~svafSPDG~~LAsgs~ 650 (1715)
..+.... ..+....|+++|..++..+.
T Consensus 296 ~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 296 KSVSLPPPLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp EEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred hcccCCCccccccccccEECCCCCEEEEeCc
Confidence 8877532 22445677888887766544
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0048 Score=77.13 Aligned_cols=74 Identities=14% Similarity=0.132 Sum_probs=64.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD 316 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t 316 (1715)
.+...|.|++++|+...|+.|+.||.|.+||...+... +..+.-..+.++|+|+|.++++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 57789999999999999999999999999998776333 333456788999999999999999999999999753
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.18 Score=58.89 Aligned_cols=205 Identities=13% Similarity=0.121 Sum_probs=113.8
Q ss_pred cceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccc
Q 048801 398 HQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476 (1715)
Q Consensus 398 ~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~ 476 (1715)
..+..++|+|+. .++++....+.|..++.. +++ ... ..+.+ .+..-.|++..++
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v------lr~-i~l~g-~~D~EgI~y~g~~---------------- 76 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV------LRR-IPLDG-FGDYEGITYLGNG---------------- 76 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E------EEE-EE-SS--SSEEEEEE-STT----------------
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE------EEE-EeCCC-CCCceeEEEECCC----------------
Confidence 348999999974 577777788888888764 322 111 12233 3466777777654
Q ss_pred ccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC
Q 048801 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD 556 (1715)
Q Consensus 477 ~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD 556 (1715)
.++++--.++.+.++++........... ...+.+. ....+..++-.++|++.
T Consensus 77 ----------~~vl~~Er~~~L~~~~~~~~~~~~~~~~-~~~~~l~-----------------~~~~~N~G~EGla~D~~ 128 (248)
T PF06977_consen 77 ----------RYVLSEERDQRLYIFTIDDDTTSLDRAD-VQKISLG-----------------FPNKGNKGFEGLAYDPK 128 (248)
T ss_dssp ----------EEEEEETTTTEEEEEEE----TT--EEE-EEEEE--------------------S---SS--EEEEEETT
T ss_pred ----------EEEEEEcCCCcEEEEEEeccccccchhh-ceEEecc-----------------cccCCCcceEEEEEcCC
Confidence 4555556789999988854221110000 0011110 01234567899999998
Q ss_pred CCEEEEEecCCeEEEEECCC---CceEEEE--e------cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 048801 557 NRFVLAAIMDCRICVWNAVD---GSLVHSL--T------GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI 625 (1715)
Q Consensus 557 G~~LaTgs~DGtI~IWDl~s---g~~l~tL--~------gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t 625 (1715)
+..|+++-...-..||.+.. ...+... . .....+.+++++|..+++++....+..|.++| .+|+.+..
T Consensus 129 ~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~ 207 (248)
T PF06977_consen 129 TNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSS 207 (248)
T ss_dssp TTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEE
T ss_pred CCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEE
Confidence 88777777766666666543 2222211 1 13345789999998889998888999999999 68888877
Q ss_pred EEccc---------ceEEEEEEcCCCCEEEEEeCCCeEEEE
Q 048801 626 YEIGR---------FKLVDGKFSPDGTSIVLSDDVGQIYLL 657 (1715)
Q Consensus 626 l~~h~---------~~V~svafSPDG~~LAsgs~DG~I~IW 657 (1715)
+.... ...-.|+|.++|++.+ .++-+..++|
T Consensus 208 ~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 208 LSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp EE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred EEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 76433 1355789999996544 4466666665
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.064 Score=67.50 Aligned_cols=137 Identities=18% Similarity=0.127 Sum_probs=86.0
Q ss_pred eeEEEeCCCCCEEEEEe-cCC--eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCc--EEEEECCCCce
Q 048801 548 VNMIVWSLDNRFVLAAI-MDC--RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGR--TIVWDIWEGTP 622 (1715)
Q Consensus 548 VtslafSPDG~~LaTgs-~DG--tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGt--I~VWDl~tgk~ 622 (1715)
-...+|||||+.|+.+. .|| .|++.|+..+...+ +..-.+.-..-.|+|++..++.+.+..|. |.+.+...+..
T Consensus 240 ~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 240 NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 34568999999887654 344 47778887776433 55444444467899977777777777776 44555544443
Q ss_pred EEEEEcccceEEEEEEcCCCCEEEEEeC-CCe--EEEEECCCCccc-----cccccceeecCCCccEEEcCC
Q 048801 623 IRIYEIGRFKLVDGKFSPDGTSIVLSDD-VGQ--IYLLNTGQGESQ-----KDAKYDQFFLGDYRPLIRDSL 686 (1715)
Q Consensus 623 l~tl~~h~~~V~svafSPDG~~LAsgs~-DG~--I~IWdl~tGe~~-----k~~~~~~~fs~D~r~L~~d~~ 686 (1715)
..+....+.-..-.|||||++|+..+. +|. |.+.++.++... ....-...|.++++.+++...
T Consensus 319 -~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 319 -TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred -eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEecc
Confidence 333322222237789999999997764 354 666777666421 122223467778887776543
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.86 E-value=3.3 Score=55.29 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=80.5
Q ss_pred eeEEEeCCC-CCEEEEEe----------cCCeEEEEECCCCceEEEEecC--CCCeEEEEEccCCCcEEEEEeCCCcEEE
Q 048801 548 VNMIVWSLD-NRFVLAAI----------MDCRICVWNAVDGSLVHSLTGH--SASSYVLDVHPFNPRIAMSAGYDGRTIV 614 (1715)
Q Consensus 548 VtslafSPD-G~~LaTgs----------~DGtI~IWDl~sg~~l~tL~gH--~~~V~sLafSP~dg~lLaSgs~DGtI~V 614 (1715)
|.++.|..| +.++++|. ..|.|.|+.+..+..+.....+ .+.|.++.. ++++++| +-...|++
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~--fngkllA--~In~~vrL 852 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE--FNGKLLA--GINQSVRL 852 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh--hCCeEEE--ecCcEEEE
Confidence 555567777 77888776 3578888888775555444333 445555543 4677775 45678999
Q ss_pred EECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 615 WDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 615 WDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
|+..+++.++.-..+..++..+...-.|..+++|+--+.+.+....
T Consensus 853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYK 898 (1096)
T ss_pred EEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence 9999988888777788899999999999999999998888775543
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.25 Score=58.37 Aligned_cols=143 Identities=18% Similarity=0.169 Sum_probs=86.0
Q ss_pred CCCCEEEEEeCCCcEEEEeCC-CCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE--------
Q 048801 253 RSGRFVITGSDDRLVKIWSME-TAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL-------- 323 (1715)
Q Consensus 253 pDG~~LaTGS~DGtIrIWDl~-tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L-------- 323 (1715)
..++.|+.|..+| |.++++. .......+. ...|..|...++-+.|++-+ |+.+.++++.........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4578999999998 8999983 333333333 33399999999877777664 499999998765433311
Q ss_pred ------eCCCCCeEEEE-ecCCCCcceEEEEecCCCcEEEEecCCCC-----CcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 324 ------RGHTGAVTAIA-FSPRPSAIYQLLSSSDDGTCRIWDARYSQ-----YSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 324 ------~gH~~~VtsLa-fSPdg~~~~~LaSgS~DGtVrIWDl~tg~-----~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
......+...+ -...... ..|+.+. ...|.+|.+.... ....+.+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~-~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~l--------------------- 137 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGS-RRLCVAV-KKKILIYEWNDPRNSFSKLLKEISL--------------------- 137 (275)
T ss_pred ccccccccccCCeeEEeeccccccc-eEEEEEE-CCEEEEEEEECCcccccceeEEEEc---------------------
Confidence 11223344444 1122221 2444443 4488888776531 1222222
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCC
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSS 430 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~ 430 (1715)
...+.+++|. ++.|++|..++ ..+.|+.++.
T Consensus 138 -----p~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~ 168 (275)
T PF00780_consen 138 -----PDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGS 168 (275)
T ss_pred -----CCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCC
Confidence 3457888888 55777776544 7788887653
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.51 Score=61.35 Aligned_cols=68 Identities=9% Similarity=0.009 Sum_probs=45.5
Q ss_pred CCEEEEEeCCCeeEEEECCCCCceEEEeCCC-CCeEE----------EEecCCCCcceEEEEecCCCcEEEEecCCCCCc
Q 048801 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHT-GAVTA----------IAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365 (1715)
Q Consensus 297 g~lLASGS~DGtIrVWDl~tg~~l~~L~gH~-~~Vts----------LafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l 365 (1715)
+..|+.++.++.|.-.|..+|+.+..+.... ..+.. +++. +. .++.++.|+.|...|..+|+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~---~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DG---KVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CC---EEEEEcCCCEEEEEECCCCCEE
Confidence 4466677778888888999998887765211 11111 1222 12 5777888999999999999876
Q ss_pred ceec
Q 048801 366 PRIY 369 (1715)
Q Consensus 366 ~~i~ 369 (1715)
....
T Consensus 144 W~~~ 147 (527)
T TIGR03075 144 WSKK 147 (527)
T ss_pred eecc
Confidence 6543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=1.3 Score=55.43 Aligned_cols=286 Identities=16% Similarity=0.085 Sum_probs=169.0
Q ss_pred EEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEe-CCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEE
Q 048801 267 VKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASAS-NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQL 345 (1715)
Q Consensus 267 IrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS-~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~L 345 (1715)
+.+++..+......+.-+. ....++..+++..+.... ....+.+-+............-...-..+++++.+.. .+
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~--vy 89 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNK--VY 89 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCe--EE
Confidence 6666666665555554333 556678888885444433 2234555444311111111111133467788888763 45
Q ss_pred EEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC---CCeEE
Q 048801 346 LSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS---DTFAR 422 (1715)
Q Consensus 346 aSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~---DG~Ir 422 (1715)
++...+..|.+.|..+......+.. ......+++++++..+.++.. ++.+.
T Consensus 90 v~~~~~~~v~vid~~~~~~~~~~~v--------------------------G~~P~~~~~~~~~~~vYV~n~~~~~~~vs 143 (381)
T COG3391 90 VTTGDSNTVSVIDTATNTVLGSIPV--------------------------GLGPVGLAVDPDGKYVYVANAGNGNNTVS 143 (381)
T ss_pred EecCCCCeEEEEcCcccceeeEeee--------------------------ccCCceEEECCCCCEEEEEecccCCceEE
Confidence 5666678899999766554443322 113567999999977666654 68888
Q ss_pred EEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEe
Q 048801 423 VWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWI 502 (1715)
Q Consensus 423 VWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWD 502 (1715)
+.|..+.+. +.....-..+ ..+++.|++ ...+++-..++.|.+.|
T Consensus 144 vid~~t~~~---------~~~~~vG~~P-~~~a~~p~g-------------------------~~vyv~~~~~~~v~vi~ 188 (381)
T COG3391 144 VIDAATNKV---------TATIPVGNTP-TGVAVDPDG-------------------------NKVYVTNSDDNTVSVID 188 (381)
T ss_pred EEeCCCCeE---------EEEEecCCCc-ceEEECCCC-------------------------CeEEEEecCCCeEEEEe
Confidence 888876532 2222222223 788899887 23555666899999999
Q ss_pred cCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC---CeEEEEECCCCce
Q 048801 503 PRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAVDGSL 579 (1715)
Q Consensus 503 l~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D---GtI~IWDl~sg~~ 579 (1715)
..+..... ............-..++++++|.++.+.... +.|.+.|..++..
T Consensus 189 ~~~~~v~~-------------------------~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v 243 (381)
T COG3391 189 TSGNSVVR-------------------------GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV 243 (381)
T ss_pred CCCcceec-------------------------cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence 76532110 0000011122234568999999977665544 5899999988877
Q ss_pred EEE-EecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccc---eEEEEEEcCC
Q 048801 580 VHS-LTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRF---KLVDGKFSPD 641 (1715)
Q Consensus 580 l~t-L~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~---~V~svafSPD 641 (1715)
... +..-......+.++|.+..+.+.-+..+.+.+-|..+......+..+.. .+..+++.+.
T Consensus 244 ~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 244 TATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 765 2222114567889995544444435568899999888887776654433 2444455443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.14 Score=64.64 Aligned_cols=146 Identities=15% Similarity=0.080 Sum_probs=81.6
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL 318 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~ 318 (1715)
+-...-....+.++|+|++++.++ ||...|+.....+.... +.-...+|.+.++ +|+-...++|.|+.--...
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-
T ss_pred CCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcCccc
Confidence 333444577899999999999954 67888888544444332 2334678988554 6666668889997433333
Q ss_pred ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCc
Q 048801 319 PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH 398 (1715)
Q Consensus 319 ~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~ 398 (1715)
....+.. ...+..|-. |. +|+..+ ++.|.+||+.+++.+.++.. .
T Consensus 101 ~~k~i~~-~~~~~~If~---G~---LL~~~~-~~~i~~yDw~~~~~i~~i~v---------------------------~ 145 (443)
T PF04053_consen 101 VVKSIKL-PFSVEKIFG---GN---LLGVKS-SDFICFYDWETGKLIRRIDV---------------------------S 145 (443)
T ss_dssp TT------SS-EEEEE----SS---SEEEEE-TTEEEEE-TTT--EEEEESS----------------------------
T ss_pred cceEEcC-CcccceEEc---Cc---EEEEEC-CCCEEEEEhhHcceeeEEec---------------------------C
Confidence 3333331 123444433 44 444444 44899999999998877743 1
Q ss_pred ceeEEEEccCCCeEEEecCCCeEEEEeCC
Q 048801 399 QILCCAYNANGTVFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 399 ~VtslafSpdG~~LatGs~DG~IrVWDl~ 427 (1715)
.|..+.|+++|.+++..+. ..+.|++..
T Consensus 146 ~vk~V~Ws~~g~~val~t~-~~i~il~~~ 173 (443)
T PF04053_consen 146 AVKYVIWSDDGELVALVTK-DSIYILKYN 173 (443)
T ss_dssp E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred CCcEEEEECCCCEEEEEeC-CeEEEEEec
Confidence 2789999999999998875 467777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.31 Score=59.74 Aligned_cols=88 Identities=15% Similarity=0.043 Sum_probs=49.1
Q ss_pred EEcCCCCEEEEEeC-CC--cEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCC
Q 048801 250 IFDRSGRFVITGSD-DR--LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGH 326 (1715)
Q Consensus 250 afSpDG~~LaTGS~-DG--tIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH 326 (1715)
+|.+||+.|+.++. || .+.+.|+.+++..+.-.+-........++++++.|+-......|+--|+.+.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 46789976666554 55 4666688888766554432222335667888888877666678999999998776666656
Q ss_pred CCCeEEEEecC
Q 048801 327 TGAVTAIAFSP 337 (1715)
Q Consensus 327 ~~~VtsLafSP 337 (1715)
...+-...|..
T Consensus 122 ~~~~g~gt~v~ 132 (386)
T PF14583_consen 122 DDWKGYGTWVA 132 (386)
T ss_dssp TTEEEEEEEEE
T ss_pred cccccccceee
Confidence 66555556643
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.1 Score=65.73 Aligned_cols=205 Identities=15% Similarity=0.091 Sum_probs=113.1
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCC-CcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD-GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D-GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
.+.+-|.+ |.....+..-...+..-+|+|++..+.++...... ..+.++++.+++.......
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~---------------- 236 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF---------------- 236 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc----------------
Confidence 34444543 66666666566678888999999865444333333 5689999988775433321
Q ss_pred CCCCCCCCCCCcceeEEEEccCCCeEEEe-cCCCe--EEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANGTVFVTG-SSDTF--ARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVAS 463 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG~~LatG-s~DG~--IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as 463 (1715)
...-...+|+|||+.|+.. ..||. |.++|+.+.. +..+....+.-..-.|+|+|
T Consensus 237 ----------~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~----------~~~Lt~~~gi~~~Ps~spdG--- 293 (425)
T COG0823 237 ----------NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN----------LPRLTNGFGINTSPSWSPDG--- 293 (425)
T ss_pred ----------CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc----------ceecccCCccccCccCCCCC---
Confidence 1123346799999876654 44565 5555665532 11122222222255677877
Q ss_pred cccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccC
Q 048801 464 RSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLP 543 (1715)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~ 543 (1715)
...+.+.+..|.-.||-.... +....++..
T Consensus 294 ----------------------~~ivf~Sdr~G~p~I~~~~~~----------------------------g~~~~riT~ 323 (425)
T COG0823 294 ----------------------SKIVFTSDRGGRPQIYLYDLE----------------------------GSQVTRLTF 323 (425)
T ss_pred ----------------------CEEEEEeCCCCCcceEEECCC----------------------------CCceeEeec
Confidence 345556667776666543310 111112222
Q ss_pred CCCCeeEEEeCCCCCEEEEEecC-Ce--EEEEECCCCceEEEEecCCCCeEEEEEccCCCcEE
Q 048801 544 TPRGVNMIVWSLDNRFVLAAIMD-CR--ICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIA 603 (1715)
Q Consensus 544 h~~~VtslafSPDG~~LaTgs~D-Gt--I~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lL 603 (1715)
..+.-..-.|||||++|+..+.. |. |.+.++.++..+..+. +........|.+++..++
T Consensus 324 ~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 324 SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIM 385 (425)
T ss_pred cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEE
Confidence 22222367899999999887743 33 6677776665444433 222233445666333333
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.023 Score=72.05 Aligned_cols=218 Identities=11% Similarity=0.031 Sum_probs=123.4
Q ss_pred CCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccc
Q 048801 396 QSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 396 h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
+...|.--+++..+.+++.|+.-|.+++|+-..+.. ......+..+.+..+..++..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~--------~~~~~~~~~~~~~~~~vs~~e--------------- 88 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM--------RKLKNEGATGITCVRSVSSVE--------------- 88 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhh--------hcccccCccceEEEEEecchh---------------
Confidence 344456666777899999999999999999876542 122223344455556666653
Q ss_pred cccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC
Q 048801 476 VPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL 555 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP 555 (1715)
.++|.|+..|.|.++-+..+.. +..... ..--..|...|++++|++
T Consensus 89 -----------~lvAagt~~g~V~v~ql~~~~p----------------~~~~~~-------t~~d~~~~~rVTal~Ws~ 134 (726)
T KOG3621|consen 89 -----------YLVAAGTASGRVSVFQLNKELP----------------RDLDYV-------TPCDKSHKCRVTALEWSK 134 (726)
T ss_pred -----------HhhhhhcCCceEEeehhhccCC----------------Ccceee-------ccccccCCceEEEEEecc
Confidence 5778888888998886654210 000000 000112778899999999
Q ss_pred CCCEEEEEecCCeEEEEECCCC----ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccc
Q 048801 556 DNRFVLAAIMDCRICVWNAVDG----SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRF 631 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl~sg----~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~ 631 (1715)
++..|++|...|.|.+-.+.+. -..+.+..-.+.|..|... ...+|++...- -.+++...++..+.-...+.
T Consensus 135 ~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~r--~~Lc~tE~eti~QIG~k~R~ 210 (726)
T KOG3621|consen 135 NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLTR--CILCQTEAETITQIGKKPRK 210 (726)
T ss_pred cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhhh--hheeecchhHHHHhcCCCcC
Confidence 9999999999999998887762 1122333345666666653 45566554432 23444433321111110111
Q ss_pred e--EEEEEEcCC-----CCEEEEEeCCCeEEEEECCCCccccccccceeec
Q 048801 632 K--LVDGKFSPD-----GTSIVLSDDVGQIYLLNTGQGESQKDAKYDQFFL 675 (1715)
Q Consensus 632 ~--V~svafSPD-----G~~LAsgs~DG~I~IWdl~tGe~~k~~~~~~~fs 675 (1715)
. -...+|-|. ...|+++--.++++.-|+ .|+.+++..+...+.
T Consensus 211 ~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~-~G~V~~Thqfk~ala 260 (726)
T KOG3621|consen 211 SLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADF-AGEVIKTHQFKDALA 260 (726)
T ss_pred CccccceEEeeccccCCCceEEEecCCCceEEeec-ceeEEEeeehhhhhc
Confidence 1 223344443 234555444334433343 466665555544444
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.62 E-value=1.1 Score=56.43 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=45.7
Q ss_pred EEEcCCCCEEEEEeCC----------C-cEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC
Q 048801 249 AIFDRSGRFVITGSDD----------R-LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 249 VafSpDG~~LaTGS~D----------G-tIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~ 315 (1715)
++.+|.|..||...++ . .|.||+.. |+.+.++.--.+.|.++.|+.+. .|++...||.++++|+.
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 3445555555554333 2 59999865 66777765445899999999865 55566799999999985
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.23 Score=61.98 Aligned_cols=271 Identities=12% Similarity=0.097 Sum_probs=133.9
Q ss_pred CeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC
Q 048801 329 AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN 408 (1715)
Q Consensus 329 ~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd 408 (1715)
.|+.+.|+++.. -|+++...|.|.||.+...+.-.....+ .-....+.+
T Consensus 3 ~v~~vs~a~~t~---Elav~~~~GeVv~~k~~~n~~~~~~~~~---------------------------~~~~~~~~~- 51 (395)
T PF08596_consen 3 SVTHVSFAPETL---ELAVGLESGEVVLFKFGKNQNYGNREQP---------------------------PDLDYNFRR- 51 (395)
T ss_dssp -EEEEEEETTTT---EEEEEETTS-EEEEEEEE---------------------------------------------S-
T ss_pred eEEEEEecCCCc---eEEEEccCCcEEEEEcccCCCCCccCCC---------------------------cccCccccc-
Confidence 488999999876 7999999999999987654321100000 000011110
Q ss_pred CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCce
Q 048801 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN 488 (1715)
Q Consensus 409 G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~ 488 (1715)
+ ...++.-.+-|+.........+...+...+....++|++++.+.-| +
T Consensus 52 ---~--~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iG---------------------------F 99 (395)
T PF08596_consen 52 ---F--SLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIG---------------------------F 99 (395)
T ss_dssp -------GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTS---------------------------E
T ss_pred ---c--cccCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCCCc---------------------------E
Confidence 0 0011122233433221111112244455666668899999998754 8
Q ss_pred EEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-----CC---CEE
Q 048801 489 IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-----DN---RFV 560 (1715)
Q Consensus 489 LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-----DG---~~L 560 (1715)
++.|..+|.+.|.|++....+....- .. ..........|+++.|+- |+ -.|
T Consensus 100 vaigy~~G~l~viD~RGPavI~~~~i-~~--------------------~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 100 VAIGYESGSLVVIDLRGPAVIYNENI-RE--------------------SFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEEG-GG----------------------T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred EEEEecCCcEEEEECCCCeEEeeccc-cc--------------------cccccccccCeeEEEEEEEecCCCcccceEE
Confidence 99999999999999987554432100 00 000111234577777762 33 468
Q ss_pred EEEecCCeEEEEECC--C-CceE----EEEecCCCCeEEEE-EccCC--------------------CcEEEEEeCCCcE
Q 048801 561 LAAIMDCRICVWNAV--D-GSLV----HSLTGHSASSYVLD-VHPFN--------------------PRIAMSAGYDGRT 612 (1715)
Q Consensus 561 aTgs~DGtI~IWDl~--s-g~~l----~tL~gH~~~V~sLa-fSP~d--------------------g~lLaSgs~DGtI 612 (1715)
++|...|.+.+|.+. . +... .....+.+.|..|. |+.+. +.+++.+ .+..|
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~i 237 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDI 237 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccce
Confidence 889999999999774 1 2221 12224566666655 32211 1244444 46679
Q ss_pred EEEECCCCceEEEEEcccceEEEEEE-----cCCCCEEEEEeCCCeEEEEECCCCcccccccc----------ceeecCC
Q 048801 613 IVWDIWEGTPIRIYEIGRFKLVDGKF-----SPDGTSIVLSDDVGQIYLLNTGQGESQKDAKY----------DQFFLGD 677 (1715)
Q Consensus 613 ~VWDl~tgk~l~tl~~h~~~V~svaf-----SPDG~~LAsgs~DG~I~IWdl~tGe~~k~~~~----------~~~fs~D 677 (1715)
+|+...+.+..+...........+.+ ...+..|++-..+|.|++|.+..-+.+..... ...|+.+
T Consensus 238 rv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~ 317 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRN 317 (395)
T ss_dssp EEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TT
T ss_pred EEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCC
Confidence 99999888877666523223334455 34677888889999999999987766543322 2345556
Q ss_pred CccEEEc
Q 048801 678 YRPLIRD 684 (1715)
Q Consensus 678 ~r~L~~d 684 (1715)
|.-+.+.
T Consensus 318 Gdi~~~~ 324 (395)
T PF08596_consen 318 GDIFYWT 324 (395)
T ss_dssp S-EEEE-
T ss_pred CCEEEEe
Confidence 6655444
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.92 Score=57.07 Aligned_cols=254 Identities=15% Similarity=0.163 Sum_probs=123.7
Q ss_pred eEEEEECCCCCEEEEE-eCCC----eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecC----------CC
Q 048801 288 ITDLAVSSNNTLVASA-SNDF----VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD----------DG 352 (1715)
Q Consensus 288 VtsLafSpDg~lLASG-S~DG----tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~----------DG 352 (1715)
+..+++||||++||.+ +..| .|+|.|+.+|+.+...... .....+.|.+++.. ++.+... ..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~--~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKG--FFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSE--EEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCE--EEEEEeCcccccccCCCCc
Confidence 3467899999998865 3334 5999999999766532111 11234999999874 2333322 22
Q ss_pred cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC---C-CeEEEEeCCC
Q 048801 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS---D-TFARVWSACK 428 (1715)
Q Consensus 353 tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~---D-G~IrVWDl~t 428 (1715)
.|.+|.+.+......+...... .......+..++++++|+.... + ..+.+.++..
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~---------------------~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPD---------------------EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TT---------------------CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEEEEECCCChHhCeeEEeecC---------------------CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 3777777665433222111110 0112567889999998775432 2 3567777754
Q ss_pred CCccCCCCCceeeeeecCCCCCe-eEEEEccCcccccccccccccccccccccCCcccCceEEEEc---CCCeEEEEecC
Q 048801 429 SSVEDSEQPIHELDVLSGHENDV-NYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS---RDGSAIIWIPR 504 (1715)
Q Consensus 429 ~~~~~~~~~~~~l~~l~gH~~~V-~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS---~DGsIrIWDl~ 504 (1715)
.. .+......+......+ ..+....+ .+++... ..+.|...++.
T Consensus 262 ~~-----~~~~~~~~l~~~~~~~~~~v~~~~~---------------------------~~yi~Tn~~a~~~~l~~~~l~ 309 (414)
T PF02897_consen 262 GG-----SPDAKPKLLSPREDGVEYYVDHHGD---------------------------RLYILTNDDAPNGRLVAVDLA 309 (414)
T ss_dssp TT-----TSS-SEEEEEESSSS-EEEEEEETT---------------------------EEEEEE-TT-TT-EEEEEETT
T ss_pred cC-----CCcCCcEEEeCCCCceEEEEEccCC---------------------------EEEEeeCCCCCCcEEEEeccc
Confidence 21 0111122222222222 22322211 2333222 23455555554
Q ss_pred CCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEE-EecCC--eEEEEECCCCceEE
Q 048801 505 SRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA-AIMDC--RICVWNAVDGSLVH 581 (1715)
Q Consensus 505 t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaT-gs~DG--tI~IWDl~sg~~l~ 581 (1715)
.... ..|. ..+..+...+.-..+...+.+|+. ...++ .|+++++..+....
T Consensus 310 ~~~~----~~~~----------------------~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~ 363 (414)
T PF02897_consen 310 DPSP----AEWW----------------------TVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESR 363 (414)
T ss_dssp STSG----GGEE----------------------EEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEE
T ss_pred cccc----ccce----------------------eEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEe
Confidence 3210 0011 123334443333333334444444 44444 58899998444444
Q ss_pred EEec-CCCCeEEEEEccCCCcEEEEEeC---CCcEEEEECCCCceE
Q 048801 582 SLTG-HSASSYVLDVHPFNPRIAMSAGY---DGRTIVWDIWEGTPI 623 (1715)
Q Consensus 582 tL~g-H~~~V~sLafSP~dg~lLaSgs~---DGtI~VWDl~tgk~l 623 (1715)
.+.. -.+.|..+...+....+.++.+. -++|..||+.+++..
T Consensus 364 ~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 364 EIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred eecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 4443 34445666655645555554432 357888899888754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.091 Score=69.80 Aligned_cols=136 Identities=12% Similarity=0.104 Sum_probs=94.0
Q ss_pred eCCCcEEEEeCCCCcEEEEecCCCCC-eEEEEECC-----CCCEEEEEeCCCeeEEEECCCC-CceEEEe----CCCCCe
Q 048801 262 SDDRLVKIWSMETAFCLASCRGHEGD-ITDLAVSS-----NNTLVASASNDFVIRVWRLPDG-LPISVLR----GHTGAV 330 (1715)
Q Consensus 262 S~DGtIrIWDl~tgk~l~tL~gHs~~-VtsLafSp-----Dg~lLASGS~DGtIrVWDl~tg-~~l~~L~----gH~~~V 330 (1715)
.....|+-.|++.|+.+..+..|... |..++-.. +..-.+.|-.+..+..||.+-. ..+..-. ......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 34578888999999999999887754 65554321 1234566777889999998753 2222111 233567
Q ss_pred EEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC
Q 048801 331 TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT 410 (1715)
Q Consensus 331 tsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~ 410 (1715)
+|++-+.+| +||+|+.+|.||+||- .|.... ....+-+.+|.+|..+.||+
T Consensus 581 s~~aTt~~G----~iavgs~~G~IRLyd~-~g~~AK------------------------T~lp~lG~pI~~iDvt~DGk 631 (794)
T PF08553_consen 581 SCFATTEDG----YIAVGSNKGDIRLYDR-LGKRAK------------------------TALPGLGDPIIGIDVTADGK 631 (794)
T ss_pred eEEEecCCc----eEEEEeCCCcEEeecc-cchhhh------------------------hcCCCCCCCeeEEEecCCCc
Confidence 888888887 7999999999999983 221110 11122367899999999999
Q ss_pred eEEEecCCCeEEEEeCC
Q 048801 411 VFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 411 ~LatGs~DG~IrVWDl~ 427 (1715)
+|++.+ +..|.+++..
T Consensus 632 wilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 632 WILATC-KTYLLLIDTL 647 (794)
T ss_pred EEEEee-cceEEEEEEe
Confidence 998776 5778888763
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0015 Score=81.18 Aligned_cols=206 Identities=14% Similarity=0.114 Sum_probs=124.1
Q ss_pred CCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc
Q 048801 328 GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA 407 (1715)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp 407 (1715)
..+.|+++.-+... ..++.|..+|.|.+-.++...... ......+....++++|++
T Consensus 57 qy~kcva~~y~~d~-cIlavG~atG~I~l~s~r~~hdSs-----------------------~E~tp~~ar~Ct~lAwne 112 (783)
T KOG1008|consen 57 QYVKCVASFYGNDR-CILAVGSATGNISLLSVRHPHDSS-----------------------AEVTPGYARPCTSLAWNE 112 (783)
T ss_pred CCceeehhhcCCch-hhhhhccccCceEEeecCCccccc-----------------------ceeccccccccccccccc
Confidence 45667776655442 267888899999998776543221 111223455689999998
Q ss_pred -CCCeEEEec----CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCC
Q 048801 408 -NGTVFVTGS----SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNS 482 (1715)
Q Consensus 408 -dG~~LatGs----~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s 482 (1715)
|.++||+|- .|..+.|||+.+.-. .|........+......+++|..+
T Consensus 113 LDtn~LAagldkhrnds~~~Iwdi~s~lt----vPke~~~fs~~~l~gqns~cwlrd----------------------- 165 (783)
T KOG1008|consen 113 LDTNHLAAGLDKHRNDSSLKIWDINSLLT----VPKESPLFSSSTLDGQNSVCWLRD----------------------- 165 (783)
T ss_pred ccHHHHHhhhhhhcccCCccceecccccC----CCccccccccccccCccccccccC-----------------------
Confidence 567788774 367899999987521 111111111112233345555433
Q ss_pred cccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEE
Q 048801 483 WFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVL 561 (1715)
Q Consensus 483 ~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~La 561 (1715)
++.+++|.....+.++|++..... ...-....+..+.++| .+.+++
T Consensus 166 ---~klvlaGm~sr~~~ifdlRqs~~~------------------------------~~svnTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 166 ---TKLVLAGMTSRSVHIFDLRQSLDS------------------------------VSSVNTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred ---cchhhcccccchhhhhhhhhhhhh------------------------------hhhhhhhhcccceecCCCCCcee
Confidence 367888888889999998731100 0000112355677788 667777
Q ss_pred EEecCCeEEEEEC-CCCc-eEEEEecCC----CCeEEEEEccCCCcEEEEEeCC-CcEEEEECC
Q 048801 562 AAIMDCRICVWNA-VDGS-LVHSLTGHS----ASSYVLDVHPFNPRIAMSAGYD-GRTIVWDIW 618 (1715)
Q Consensus 562 Tgs~DGtI~IWDl-~sg~-~l~tL~gH~----~~V~sLafSP~dg~lLaSgs~D-GtI~VWDl~ 618 (1715)
+-. ||.|-+||. ..-+ ++..+.... ..+..++|+|....++++...| ++|+++|+.
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 554 999999993 3222 222222222 2488999999776777777654 789999974
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0071 Score=46.37 Aligned_cols=38 Identities=32% Similarity=0.726 Sum_probs=34.8
Q ss_pred eeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 048801 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWS 271 (1715)
Q Consensus 234 k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWD 271 (1715)
+.+..+.+|...|+++.|.+++.++++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45677889999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0022 Score=89.35 Aligned_cols=82 Identities=21% Similarity=0.312 Sum_probs=70.0
Q ss_pred ccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHH
Q 048801 1627 VSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRD 1706 (1715)
Q Consensus 1627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~ 1706 (1715)
+.++.....|..+++.-.-++|.-.+.-||++.|||.+|.-++|...+.+.-|+.+||.||++||++ ++|.+..-.|..
T Consensus 1313 ~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~~ag~~l~~ 1391 (1404)
T KOG1245|consen 1313 LVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEIGRAGTCLRR 1391 (1404)
T ss_pred HHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhhhhhcchHHH
Confidence 3445666667777777777777777777778999999999999999999999999999999999999 899999888888
Q ss_pred HHH
Q 048801 1707 WFN 1709 (1715)
Q Consensus 1707 ~~~ 1709 (1715)
.|-
T Consensus 1392 ff~ 1394 (1404)
T KOG1245|consen 1392 FFH 1394 (1404)
T ss_pred HHH
Confidence 776
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.31 E-value=7.6 Score=52.68 Aligned_cols=112 Identities=10% Similarity=-0.004 Sum_probs=73.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCC--------eEEEEEC----------------CCCCEEEEEeCCCeeE
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEGD--------ITDLAVS----------------SNNTLVASASNDFVIR 310 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~--------VtsLafS----------------pDg~lLASGS~DGtIr 310 (1715)
+..|+.++.++.|.-.|..||+.+-.+.-.... ...+++. .++..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557778888899999999999988776532211 1122221 1345788899999999
Q ss_pred EEECCCCCceEEEeCCCCCeE-------------EEEecCC--CCcceEEEEecC----------CCcEEEEecCCCCCc
Q 048801 311 VWRLPDGLPISVLRGHTGAVT-------------AIAFSPR--PSAIYQLLSSSD----------DGTCRIWDARYSQYS 365 (1715)
Q Consensus 311 VWDl~tg~~l~~L~gH~~~Vt-------------sLafSPd--g~~~~~LaSgS~----------DGtVrIWDl~tg~~l 365 (1715)
-.|..+|+.+..+. ..+.|. .+.-.|- +. .+++|+. +|.|+-+|+.+|+.+
T Consensus 274 ALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g---~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 274 ALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGT---TVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECC---EEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 99999999887763 222221 1111110 11 4555532 688999999999988
Q ss_pred ceecC
Q 048801 366 PRIYL 370 (1715)
Q Consensus 366 ~~i~~ 370 (1715)
-.+..
T Consensus 350 W~~~~ 354 (764)
T TIGR03074 350 WAWDP 354 (764)
T ss_pred eEEec
Confidence 77764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.17 E-value=3.2 Score=48.98 Aligned_cols=255 Identities=14% Similarity=0.145 Sum_probs=128.0
Q ss_pred CCCCEEEEEeCCCeeEEEECCC-CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCC
Q 048801 295 SNNTLVASASNDFVIRVWRLPD-GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKP 373 (1715)
Q Consensus 295 pDg~lLASGS~DGtIrVWDl~t-g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~ 373 (1715)
..++.|+.|+.+| |.++++.. ........ ...|..|...++-+ .|++-+ |+.|.++++..-...........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~---~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELN---LLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccC---EEEEEc-CCccEEEEchhhccccccccccc
Confidence 4678999999998 89999833 33333332 33499999999876 444443 49999999876543221100000
Q ss_pred CCCccCccCCCCCCCCCCCCCCCCcceeEEE--EccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCc-eeeeeecCCCC
Q 048801 374 PDAITGKSNVPSNNGPSSSNGLQSHQILCCA--YNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPI-HELDVLSGHEN 449 (1715)
Q Consensus 374 ~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsla--fSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~-~~l~~l~gH~~ 449 (1715)
.. + ............+..++ -...+ ..|+++ ....|.+|....... .. .....+.- ..
T Consensus 78 ~~---~--------~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~-----~f~~~~ke~~l-p~ 139 (275)
T PF00780_consen 78 PK---S--------RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRN-----SFSKLLKEISL-PD 139 (275)
T ss_pred cc---c--------ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcc-----cccceeEEEEc-CC
Confidence 00 0 00000011122233333 11233 445544 455888888865311 01 22233222 25
Q ss_pred CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCC
Q 048801 450 DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLP 529 (1715)
Q Consensus 450 ~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~ 529 (1715)
.+.+++|.+ +.|+.|..++ ..+.|+.++..........
T Consensus 140 ~~~~i~~~~----------------------------~~i~v~~~~~-f~~idl~~~~~~~l~~~~~------------- 177 (275)
T PF00780_consen 140 PPSSIAFLG----------------------------NKICVGTSKG-FYLIDLNTGSPSELLDPSD------------- 177 (275)
T ss_pred CcEEEEEeC----------------------------CEEEEEeCCc-eEEEecCCCCceEEeCccC-------------
Confidence 677888874 4666666554 5667777543211100000
Q ss_pred CCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEE--EEecCCCCeEEEEEccCCCcEEEEEe
Q 048801 530 PQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVH--SLTGHSASSYVLDVHPFNPRIAMSAG 607 (1715)
Q Consensus 530 ~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~--tL~gH~~~V~sLafSP~dg~lLaSgs 607 (1715)
.............++..+.++ ++.+|++. +..-.+.| ..|+..+ .+.-.. ...++++.. +.++ ..+
T Consensus 178 ----~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~-~~G~~~r~~~i~W~~-~p~~~~~~~--pyli-~~~ 245 (275)
T PF00780_consen 178 ----SSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVN-KNGEPSRKSTIQWSS-APQSVAYSS--PYLI-AFS 245 (275)
T ss_pred ----CcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEc-CCCCcCcccEEEcCC-chhEEEEEC--CEEE-EEC
Confidence 000001111122334444444 35666643 32333334 3554443 333323 344555532 3444 333
Q ss_pred CCCcEEEEECCCCceEEEEEcc
Q 048801 608 YDGRTIVWDIWEGTPIRIYEIG 629 (1715)
Q Consensus 608 ~DGtI~VWDl~tgk~l~tl~~h 629 (1715)
++.|.||++.+|++++++...
T Consensus 246 -~~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 246 -SNSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred -CCEEEEEECcCCcEEEEEECC
Confidence 466999999999999998743
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.014 Score=44.75 Aligned_cols=39 Identities=36% Similarity=0.604 Sum_probs=35.0
Q ss_pred CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 275 AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
+.++..+..|...|.++.|++++.++++++.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677788999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.11 E-value=2 Score=54.06 Aligned_cols=100 Identities=19% Similarity=0.189 Sum_probs=59.9
Q ss_pred CCeEEEEECCCCce---EEEEecCCCCeEEEEEccCCCcEEEEEeCCC--cEEEEECCCCceEEEEEc-ccceEEEEEEc
Q 048801 566 DCRICVWNAVDGSL---VHSLTGHSASSYVLDVHPFNPRIAMSAGYDG--RTIVWDIWEGTPIRIYEI-GRFKLVDGKFS 639 (1715)
Q Consensus 566 DGtI~IWDl~sg~~---l~tL~gH~~~V~sLafSP~dg~lLaSgs~DG--tI~VWDl~tgk~l~tl~~-h~~~V~svafS 639 (1715)
++.|...++.+... ...+..|...+.-..+...++.++++.-.++ .|+++++..+.....+.. ..+.|..+...
T Consensus 300 ~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~ 379 (414)
T PF02897_consen 300 NGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGD 379 (414)
T ss_dssp T-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-
T ss_pred CcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCC
Confidence 45777778877653 3356666664444444444677887777776 588899974555554443 34446666666
Q ss_pred CCCCEEEEE--e--CCCeEEEEECCCCccc
Q 048801 640 PDGTSIVLS--D--DVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 640 PDG~~LAsg--s--~DG~I~IWdl~tGe~~ 665 (1715)
+++..|... + .-++|+.||+.+|+..
T Consensus 380 ~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 380 FDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 777665543 2 2368999999998753
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.026 Score=70.84 Aligned_cols=93 Identities=12% Similarity=0.071 Sum_probs=76.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeE-EEEECCCCCEEEEEeCCCeeEEEECCCCCceEE
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDIT-DLAVSSNNTLVASASNDFVIRVWRLPDGLPISV 322 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~Vt-sLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~ 322 (1715)
..|.-+.|+|.-.+||++..+|.|.+..+. .+.+.++.-|...++ +++|.|||++||.|-.||+|++.|+.+|..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 456778899999999999999999999988 677788887777777 999999999999999999999999999877655
Q ss_pred E-eCCCCCeEEEEecC
Q 048801 323 L-RGHTGAVTAIAFSP 337 (1715)
Q Consensus 323 L-~gH~~~VtsLafSP 337 (1715)
. ..-...|.++-|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 2 12334555555553
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=3.1 Score=52.04 Aligned_cols=267 Identities=10% Similarity=0.046 Sum_probs=154.4
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEE-EEEeCCCeeEEEECCCCCceEE
Q 048801 245 AVYCAIFDRSGRFVITGS-DDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV-ASASNDFVIRVWRLPDGLPISV 322 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS-~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lL-ASGS~DGtIrVWDl~tg~~l~~ 322 (1715)
....+++.++|..+.... ....+.+.+................-..+++++.+..+ ++...++.|.+.|..+...+..
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 445667788885444332 22245555544222222222221344578888888744 4445568999999877776666
Q ss_pred EeCCCCCeEEEEecCCCCcceEEEEec-CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCccee
Q 048801 323 LRGHTGAVTAIAFSPRPSAIYQLLSSS-DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQIL 401 (1715)
Q Consensus 323 L~gH~~~VtsLafSPdg~~~~~LaSgS-~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vt 401 (1715)
..--. ....++++++++.. +++-.. .++++.+.|-.++..+....... .+ .
T Consensus 112 ~~vG~-~P~~~~~~~~~~~v-YV~n~~~~~~~vsvid~~t~~~~~~~~vG~-------------------------~P-~ 163 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYV-YVANAGNGNNTVSVIDAATNKVTATIPVGN-------------------------TP-T 163 (381)
T ss_pred eeecc-CCceEEECCCCCEE-EEEecccCCceEEEEeCCCCeEEEEEecCC-------------------------Cc-c
Confidence 54222 66789999999742 222222 47888888888776655432210 11 7
Q ss_pred EEEEccCCCeEEEe-cCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccccc
Q 048801 402 CCAYNANGTVFVTG-SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFK 480 (1715)
Q Consensus 402 slafSpdG~~LatG-s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~ 480 (1715)
.++++|+|..+.+. ..++.|.+.|.....+.. ......+ .-...-..+.+.+++
T Consensus 164 ~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~----~~~~~P~~i~v~~~g-------------------- 218 (381)
T COG3391 164 GVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLV----GVGTGPAGIAVDPDG-------------------- 218 (381)
T ss_pred eEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccccccc----ccCCCCceEEECCCC--------------------
Confidence 89999999855554 478999999976543211 1110011 111223456677766
Q ss_pred CCcccCceEEEEcCC--CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC
Q 048801 481 NSWFCHDNIVTCSRD--GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558 (1715)
Q Consensus 481 ~s~~~~~~LaSgS~D--GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~ 558 (1715)
....++...+ +.+.+.|..++...... ...... ....+.++|+|.
T Consensus 219 -----~~~yV~~~~~~~~~v~~id~~~~~v~~~~---------------------------~~~~~~-~~~~v~~~p~g~ 265 (381)
T COG3391 219 -----NRVYVANDGSGSNNVLKIDTATGNVTATD---------------------------LPVGSG-APRGVAVDPAGK 265 (381)
T ss_pred -----CEEEEEeccCCCceEEEEeCCCceEEEec---------------------------cccccC-CCCceeECCCCC
Confidence 2234444333 67777777654311110 000111 344578999999
Q ss_pred EEEEEec-CCeEEEEECCCCceEEEEecCCC---CeEEEEEcc
Q 048801 559 FVLAAIM-DCRICVWNAVDGSLVHSLTGHSA---SSYVLDVHP 597 (1715)
Q Consensus 559 ~LaTgs~-DGtI~IWDl~sg~~l~tL~gH~~---~V~sLafSP 597 (1715)
++.+... .+.|.+.|..+......+..... .+..+++.+
T Consensus 266 ~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 266 AAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred EEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 9988744 48899999888877776654332 344555544
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.51 Score=55.23 Aligned_cols=171 Identities=12% Similarity=0.136 Sum_probs=97.6
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcEEEEecCC-CCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVI-TGSDDRLVKIWSMETAFCLASCRGH-EGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~La-TGS~DGtIrIWDl~tgk~l~tL~gH-s~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
.+.|.|-...|..++|+|+.+.|+ +....+.|...+. +|+.++.+.-. .+..-.|++..++.++++.-.++.+.+.+
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 345777777899999999866555 5556788888886 47888776533 46788999998887777765689999998
Q ss_pred CCCCC-c--e---EEEe-----CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCC---CcceecCCCCCCCccC
Q 048801 314 LPDGL-P--I---SVLR-----GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQ---YSPRIYLPKPPDAITG 379 (1715)
Q Consensus 314 l~tg~-~--l---~~L~-----gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~---~l~~i~~~~~~~~i~g 379 (1715)
+.... . . ..+. .+...+-.|+|.+.+. .|+.+-......||.+.... .+...... .
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~---~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~-------~ 162 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN---RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQ-------D 162 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTT---EEEEEEESSSEEEEEEESTT-SS--EEEE-H-------H
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCC---EEEEEeCCCChhhEEEccccCccceeecccc-------c
Confidence 84321 1 1 1121 2446689999999877 56666677777777665311 10000000 0
Q ss_pred ccCCCCCCCCCCCCCCCCcceeEEEEccC-CCeEEEecCCCeEEEEeCC
Q 048801 380 KSNVPSNNGPSSSNGLQSHQILCCAYNAN-GTVFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 380 ~~~~~~~~~~~~~~~~h~~~VtslafSpd-G~~LatGs~DG~IrVWDl~ 427 (1715)
. ......-..+.+++++|. |.+++.......|.++|..
T Consensus 163 ~----------~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 163 L----------DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp H----------H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT
T ss_pred c----------ccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC
Confidence 0 001112234788899885 5677777788888888853
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.017 Score=73.70 Aligned_cols=106 Identities=19% Similarity=0.232 Sum_probs=86.4
Q ss_pred CCCChHHHHHHhhhHHHhhhhc--cccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 048801 1606 PEIDSESRDKLLSSFNKLEQSV--SRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVM 1683 (1715)
Q Consensus 1606 ~~i~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~ 1683 (1715)
|-|++..+.++...|.-+.+.. +-.+-+.-|.++=.-...+.|......||.+..||+|+...=|++++-+.-|+.+|
T Consensus 47 p~i~~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm 126 (629)
T KOG1827|consen 47 PVIDPPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLM 126 (629)
T ss_pred cccChHHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4567776666665555554432 34444455666666667788999999999999999999999999999999999999
Q ss_pred HhhhhhccCCChHHHHHHHHHHHHHHHH
Q 048801 1684 LSNAESYFIKNAALSAKVERLRDWFNRT 1711 (1715)
Q Consensus 1684 ~~Na~~~n~~~~~i~~~~~~l~~~~~~~ 1711 (1715)
++||++||.+++.|.++|..|.+-|...
T Consensus 127 ~ena~~~n~~ds~~~~~s~~l~~~~~~~ 154 (629)
T KOG1827|consen 127 TENARLYNRPDSLIYKDSGELEKYFISL 154 (629)
T ss_pred HHHHHHhcCcchhhhhhhhhhhcchhhh
Confidence 9999999999999999999999988763
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.63 E-value=2.5 Score=51.16 Aligned_cols=231 Identities=12% Similarity=0.060 Sum_probs=126.1
Q ss_pred EECCCCCE-EEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecC
Q 048801 292 AVSSNNTL-VASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYL 370 (1715)
Q Consensus 292 afSpDg~l-LASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~ 370 (1715)
.|.++... +.+--..+.|.-|+..++.. ..+. +.+.+.++.....+. .|+++. .| +.+++..++.....+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g---~Lv~~~-~g-~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGG---RLIACE-HG-VRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCC---eEEEEc-cc-cEEEeccCCceeEEecc
Confidence 46666664 44445577888888876643 3333 333445544444443 344443 33 56667655543222211
Q ss_pred CCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-----------CCeEEEEeCCCCCccCCCCCce
Q 048801 371 PKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-----------DTFARVWSACKSSVEDSEQPIH 439 (1715)
Q Consensus 371 ~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-----------DG~IrVWDl~t~~~~~~~~~~~ 439 (1715)
... .........+...|+|.+.++... -|.|+.++. .+ .
T Consensus 104 ~~~--------------------~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g---------~ 153 (307)
T COG3386 104 PED--------------------GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG---------G 153 (307)
T ss_pred ccC--------------------CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC---------C
Confidence 110 011233556778888876665433 122333332 11 2
Q ss_pred eeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccc
Q 048801 440 ELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAY 519 (1715)
Q Consensus 440 ~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~ 519 (1715)
....+..+-..-+.|+|+|++ ..++++=+..+.|..|++.... +....
T Consensus 154 ~~~l~~~~~~~~NGla~SpDg-------------------------~tly~aDT~~~~i~r~~~d~~~--g~~~~----- 201 (307)
T COG3386 154 VVRLLDDDLTIPNGLAFSPDG-------------------------KTLYVADTPANRIHRYDLDPAT--GPIGG----- 201 (307)
T ss_pred EEEeecCcEEecCceEECCCC-------------------------CEEEEEeCCCCeEEEEecCccc--CccCC-----
Confidence 233444444556789999987 2345555556778777765200 00000
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC-eEEEEECCCCceEEEEecCCCCeEEEEEcc-
Q 048801 520 HLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNAVDGSLVHSLTGHSASSYVLDVHP- 597 (1715)
Q Consensus 520 ~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG-tI~IWDl~sg~~l~tL~gH~~~V~sLafSP- 597 (1715)
...........+..-.++...+|.+.+++..+| .|.+|+.. |+++..+.-....+++++|--
T Consensus 202 ---------------~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~ 265 (307)
T COG3386 202 ---------------RRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGP 265 (307)
T ss_pred ---------------cceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCC
Confidence 000111122345566788888998886666555 89999987 999999987767788888842
Q ss_pred CCCcEEEEEe
Q 048801 598 FNPRIAMSAG 607 (1715)
Q Consensus 598 ~dg~lLaSgs 607 (1715)
+...+++|+.
T Consensus 266 ~~~~L~iTs~ 275 (307)
T COG3386 266 DLNTLYITSA 275 (307)
T ss_pred CcCEEEEEec
Confidence 2234444443
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.44 E-value=15 Score=49.38 Aligned_cols=119 Identities=13% Similarity=0.132 Sum_probs=76.5
Q ss_pred CCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe-cCCCCeEEEEEccC--CCc---EEEEEeCCCcEEEEE-CC
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT-GHSASSYVLDVHPF--NPR---IAMSAGYDGRTIVWD-IW 618 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~-gH~~~V~sLafSP~--dg~---lLaSgs~DGtI~VWD-l~ 618 (1715)
..++..+.+.+...++.++.++.+...++..+.+..... .....|.|+.++|. ++. +++.|.++..+.+.- ..
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 345566666677788888888888777877666332221 23567899999975 333 888888777655443 33
Q ss_pred CCceEEEEEc----ccceEEEEEEcCCCCEEEEEeCCCeEEEE--ECCCCcc
Q 048801 619 EGTPIRIYEI----GRFKLVDGKFSPDGTSIVLSDDVGQIYLL--NTGQGES 664 (1715)
Q Consensus 619 tgk~l~tl~~----h~~~V~svafSPDG~~LAsgs~DG~I~IW--dl~tGe~ 664 (1715)
+...+..... -...|.-..|--|+.+|.++..||.+.-| |..+|+.
T Consensus 568 d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 568 DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence 3333332211 12345566777789999999999988655 5556643
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=95.37 E-value=2 Score=57.54 Aligned_cols=133 Identities=16% Similarity=0.155 Sum_probs=86.4
Q ss_pred CCCEEEEE-eCCCeeEEEECCCCCceEEEeCCCCC-eEEEEecCCCCc----ceEEEEecCCCcEEEEecCCCCCcceec
Q 048801 296 NNTLVASA-SNDFVIRVWRLPDGLPISVLRGHTGA-VTAIAFSPRPSA----IYQLLSSSDDGTCRIWDARYSQYSPRIY 369 (1715)
Q Consensus 296 Dg~lLASG-S~DGtIrVWDl~tg~~l~~L~gH~~~-VtsLafSPdg~~----~~~LaSgS~DGtVrIWDl~tg~~l~~i~ 369 (1715)
+.++|+.- .....|+-.|++.|+.+..+..|... |..+ .|+.+. ....+.|-.+..|..||.+-... ..+.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCC-ceee
Confidence 33444443 45678999999999999999877654 5544 443210 01346677778899999874320 0000
Q ss_pred CCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC
Q 048801 370 LPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN 449 (1715)
Q Consensus 370 ~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~ 449 (1715)
. ............|++-+.+| +||+|+.+|.||+||-.. ......+.+-..
T Consensus 569 ~-------------------~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g---------~~AKT~lp~lG~ 619 (794)
T PF08553_consen 569 S-------------------QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG---------KRAKTALPGLGD 619 (794)
T ss_pred c-------------------cccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccc---------hhhhhcCCCCCC
Confidence 0 00011234457889888887 688899999999999432 122345667788
Q ss_pred CeeEEEEccCc
Q 048801 450 DVNYVQFSGCA 460 (1715)
Q Consensus 450 ~V~sLafspdg 460 (1715)
+|..|..+.+|
T Consensus 620 pI~~iDvt~DG 630 (794)
T PF08553_consen 620 PIIGIDVTADG 630 (794)
T ss_pred CeeEEEecCCC
Confidence 99999999987
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.36 E-value=3.2 Score=52.83 Aligned_cols=127 Identities=17% Similarity=0.127 Sum_probs=68.0
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCC
Q 048801 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS 362 (1715)
Q Consensus 283 gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg 362 (1715)
........+.++|+|++++. +.||...|+.....+... .+.....+|.+.+ .+++-...++|.|+.--..
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n----~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN----RYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS----EEEEE-TTS-EEEEETTEE
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCc----cEEEEECCCeEEEEEcCcc
Confidence 34455789999999999988 567888888843333222 2334577888855 4666666888999632222
Q ss_pred CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeee
Q 048801 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442 (1715)
Q Consensus 363 ~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~ 442 (1715)
.....+..+ ..+..+-. |.+|+..+. +.|.+||+.+++ .+.
T Consensus 100 ~~~k~i~~~--------------------------~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~---------~i~ 140 (443)
T PF04053_consen 100 EVVKSIKLP--------------------------FSVEKIFG---GNLLGVKSS-DFICFYDWETGK---------LIR 140 (443)
T ss_dssp -TT-----S--------------------------S-EEEEE----SSSEEEEET-TEEEEE-TTT-----------EEE
T ss_pred ccceEEcCC--------------------------cccceEEc---CcEEEEECC-CCEEEEEhhHcc---------eee
Confidence 221222111 11223322 888877765 489999998754 344
Q ss_pred eecCCCCCeeEEEEccCc
Q 048801 443 VLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 443 ~l~gH~~~V~sLafspdg 460 (1715)
.+... +|..+.|++++
T Consensus 141 ~i~v~--~vk~V~Ws~~g 156 (443)
T PF04053_consen 141 RIDVS--AVKYVIWSDDG 156 (443)
T ss_dssp EESS---E-EEEEE-TTS
T ss_pred EEecC--CCcEEEEECCC
Confidence 44422 48999999986
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.75 Score=46.85 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=70.5
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE
Q 048801 246 VYCAIFDR---SG-RFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS 321 (1715)
Q Consensus 246 Vt~VafSp---DG-~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~ 321 (1715)
|+++++.. || +.|++|+.|..|+||+-+ ..+..+.. ...|++++-... ..++.+..+|+|-||+- ...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 56666654 33 589999999999999854 56666663 456778877665 57888999999999974 23344
Q ss_pred EEeCCCCCeEEEEecC-CCCcceEEEEecCCCcEE
Q 048801 322 VLRGHTGAVTAIAFSP-RPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 322 ~L~gH~~~VtsLafSP-dg~~~~~LaSgS~DGtVr 355 (1715)
.++. ...++++++.. ++.....|++|-.+|.|-
T Consensus 76 RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4442 23366666554 333334788988888764
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.21 E-value=3.4 Score=48.31 Aligned_cols=254 Identities=13% Similarity=0.134 Sum_probs=133.9
Q ss_pred eEEEEecCCCCcceEEEEecCCCc-EEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC
Q 048801 330 VTAIAFSPRPSAIYQLLSSSDDGT-CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN 408 (1715)
Q Consensus 330 VtsLafSPdg~~~~~LaSgS~DGt-VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd 408 (1715)
...|+|+|..+. .++.+-.-|+ ..++|..+.+....+..... .+-.-.-.||||
T Consensus 70 ~Hgi~~~p~~~r--avafARrPGtf~~vfD~~~~~~pv~~~s~~~-----------------------RHfyGHGvfs~d 124 (366)
T COG3490 70 GHGIAFHPALPR--AVAFARRPGTFAMVFDPNGAQEPVTLVSQEG-----------------------RHFYGHGVFSPD 124 (366)
T ss_pred cCCeecCCCCcc--eEEEEecCCceEEEECCCCCcCcEEEecccC-----------------------ceeecccccCCC
Confidence 346778887653 4555555555 45788887765544422111 111223469999
Q ss_pred CCeEEEecC-----CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCc
Q 048801 409 GTVFVTGSS-----DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW 483 (1715)
Q Consensus 409 G~~LatGs~-----DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~ 483 (1715)
|.+|.+.-. -|.|-|||.+.+ ...+..+..|.-.-..+.+.++|
T Consensus 125 G~~LYATEndfd~~rGViGvYd~r~~--------fqrvgE~~t~GiGpHev~lm~DG----------------------- 173 (366)
T COG3490 125 GRLLYATENDFDPNRGVIGVYDAREG--------FQRVGEFSTHGIGPHEVTLMADG----------------------- 173 (366)
T ss_pred CcEEEeecCCCCCCCceEEEEecccc--------cceecccccCCcCcceeEEecCC-----------------------
Confidence 998886533 378999999753 33455566666666677777776
Q ss_pred ccCceEEEEcCCCeEEEE-ecCCCccCcccccccccccccCCCCCCCCCCCCCCCc--cccc--CCCCCeeEEEeCCCCC
Q 048801 484 FCHDNIVTCSRDGSAIIW-IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPR--QRLL--PTPRGVNMIVWSLDNR 558 (1715)
Q Consensus 484 ~~~~~LaSgS~DGsIrIW-Dl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~--~~l~--~h~~~VtslafSPDG~ 558 (1715)
..++.+ +|-|... |... ....+......+.+ .....+..+ ..+. .+...|+.++..+||+
T Consensus 174 ---rtlvva--nGGIethpdfgR--~~lNldsMePSlvl--------ld~atG~liekh~Lp~~l~~lSiRHld~g~dgt 238 (366)
T COG3490 174 ---RTLVVA--NGGIETHPDFGR--TELNLDSMEPSLVL--------LDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT 238 (366)
T ss_pred ---cEEEEe--CCceecccccCc--cccchhhcCccEEE--------EeccccchhhhccCchhhhhcceeeeeeCCCCc
Confidence 233332 1222222 1100 00000000000000 000011111 1111 2445688899999988
Q ss_pred EEEEEecCCe-----EEEEECCCCceEEEEe-------cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEE
Q 048801 559 FVLAAIMDCR-----ICVWNAVDGSLVHSLT-------GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY 626 (1715)
Q Consensus 559 ~LaTgs~DGt-----I~IWDl~sg~~l~tL~-------gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl 626 (1715)
.++.+-..|- -.|=-...|+.+.-+. .....|-+|+.+..++.+.+|+-..+...+||..+|..+..-
T Consensus 239 vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a 318 (366)
T COG3490 239 VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEA 318 (366)
T ss_pred EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecc
Confidence 7765543321 1111122344443332 123456678888767777777777778899999999887544
Q ss_pred EcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 627 EIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 627 ~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
.... +.. .-+...-+++++.+|.+.++.
T Consensus 319 ~l~d--aaG--va~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 319 ALPD--AAG--VAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred cccc--ccc--ceeccCceEEecCCceEEecc
Confidence 3111 112 223444477777888888774
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.57 Score=61.50 Aligned_cols=154 Identities=15% Similarity=0.125 Sum_probs=86.5
Q ss_pred CCCeEEEEEcCCCCEEEEEe------CCC--cEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC--------
Q 048801 243 RDAVYCAIFDRSGRFVITGS------DDR--LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND-------- 306 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS------~DG--tIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D-------- 306 (1715)
...+...+++|||+.+|..- .|+ .|.+++. .+.....+.+. ..+.-.|+|||..|++.+..
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 34678899999999887665 244 4444454 23332223332 38889999999888777532
Q ss_pred ----CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEE---EecCCCCCcceecCCCCCCCccC
Q 048801 307 ----FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI---WDARYSQYSPRIYLPKPPDAITG 379 (1715)
Q Consensus 307 ----GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrI---WDl~tg~~l~~i~~~~~~~~i~g 379 (1715)
+.+.+.++..+.... ...+.|..+.|+|||.. |+... +|.|.+ -....|. ..+..+
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~R---iA~i~-~g~v~Va~Vvr~~~G~--~~l~~~-------- 488 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVR---AAMII-GGKVYLAVVEQTEDGQ--YALTNP-------- 488 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCE---EEEEE-CCEEEEEEEEeCCCCc--eeeccc--------
Confidence 233333444433322 23567999999999984 33322 466766 3322332 111000
Q ss_pred ccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCC
Q 048801 380 KSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 380 ~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~ 427 (1715)
......-...+..+.|..++.++ ++..++...+|.+.
T Consensus 489 ----------~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 489 ----------REVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred ----------EEeecccCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence 00001112235778999999855 55555555566543
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.19 E-value=4.3 Score=49.81 Aligned_cols=68 Identities=19% Similarity=0.050 Sum_probs=41.4
Q ss_pred CCeEEEEEccC------CCcEEEEEeCCCcEEEEECCCCceEEEE---Ec-ccceEEEEEEcCCCCEEEEEeCCCeEE
Q 048801 588 ASSYVLDVHPF------NPRIAMSAGYDGRTIVWDIWEGTPIRIY---EI-GRFKLVDGKFSPDGTSIVLSDDVGQIY 655 (1715)
Q Consensus 588 ~~V~sLafSP~------dg~lLaSgs~DGtI~VWDl~tgk~l~tl---~~-h~~~V~svafSPDG~~LAsgs~DG~I~ 655 (1715)
..+..+.|... .+.++++.-..+.|....+..+..+... .. ....+.++++.|||.+.++.+.+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 45667777541 3356665555667877777655333222 12 233789999999999888888888775
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.8 Score=55.69 Aligned_cols=143 Identities=10% Similarity=0.128 Sum_probs=88.7
Q ss_pred CCEEEEEeC----------CCcEEEEeCCCC----cEEEEe--cCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC
Q 048801 255 GRFVITGSD----------DRLVKIWSMETA----FCLASC--RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL 318 (1715)
Q Consensus 255 G~~LaTGS~----------DGtIrIWDl~tg----k~l~tL--~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~ 318 (1715)
..+|+.|.. .|.|.++++... ..+..+ ....++|++|+-- .+. |+++. .+.|.+|++....
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 467777742 288999999874 122222 2357889999876 444 44443 3789999998777
Q ss_pred -ceEEEe-CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC-CCCcceecCCCCCCCccCccCCCCCCCCCCCCCC
Q 048801 319 -PISVLR-GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY-SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL 395 (1715)
Q Consensus 319 -~l~~L~-gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t-g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~ 395 (1715)
.+..-. .....|+++....+ +++.|.....|.++.+.. +..+..+. ...
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~~-----~I~vgD~~~sv~~~~~~~~~~~l~~va-----------------------~d~ 170 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFKN-----YILVGDAMKSVSLLRYDEENNKLILVA-----------------------RDY 170 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEETT-----EEEEEESSSSEEEEEEETTTE-EEEEE-----------------------EES
T ss_pred cchhhheecceEEEEEEecccc-----EEEEEEcccCEEEEEEEccCCEEEEEE-----------------------ecC
Confidence 333322 12336677766643 788888878888875543 11111110 011
Q ss_pred CCcceeEEEEccCCCeEEEecCCCeEEEEeCCC
Q 048801 396 QSHQILCCAYNANGTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 396 h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t 428 (1715)
....++++.|-.+++.++++..+|.+.++....
T Consensus 171 ~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 171 QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred CCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 244588999987777999999999999998863
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.086 Score=66.39 Aligned_cols=95 Identities=11% Similarity=0.133 Sum_probs=80.0
Q ss_pred CCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeE-EEEEccCCCcEEEEEeCCCcEEEEECCCCce
Q 048801 544 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSY-VLDVHPFNPRIAMSAGYDGRTIVWDIWEGTP 622 (1715)
Q Consensus 544 h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~-sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~ 622 (1715)
-...|.-+.|+|.-.+||++..+|.|.+..+. .+.+.++.-|...++ +++|.| +|.++|.|-.||+|++-|+.+|..
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCc
Confidence 34568889999999999999999999999987 888889987877777 999999 799999999999999999999988
Q ss_pred EEEEE-cccceEEEEEEcC
Q 048801 623 IRIYE-IGRFKLVDGKFSP 640 (1715)
Q Consensus 623 l~tl~-~h~~~V~svafSP 640 (1715)
+..+. .....|.++-|++
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 77632 1344677777763
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.02 E-value=1.2 Score=54.27 Aligned_cols=186 Identities=10% Similarity=0.090 Sum_probs=101.0
Q ss_pred CCeEEEecC---------C-CeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccc
Q 048801 409 GTVFVTGSS---------D-TFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 409 G~~LatGs~---------D-G~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
..+|++|+. . |.|.++++.... ........+.. ....++|++++-..
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~--~~~~~l~~i~~-~~~~g~V~ai~~~~-------------------- 98 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESP--ENNFKLKLIHS-TEVKGPVTAICSFN-------------------- 98 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-------EEEEEEE-EEESS-EEEEEEET--------------------
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEccc--ccceEEEEEEE-EeecCcceEhhhhC--------------------
Confidence 467777753 2 899999997630 00011222222 23467888887653
Q ss_pred ccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC
Q 048801 479 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~ 558 (1715)
..|+.+ ..+.|.+|++...+. +... ........+.++.. .+.
T Consensus 99 --------~~lv~~-~g~~l~v~~l~~~~~------l~~~---------------------~~~~~~~~i~sl~~--~~~ 140 (321)
T PF03178_consen 99 --------GRLVVA-VGNKLYVYDLDNSKT------LLKK---------------------AFYDSPFYITSLSV--FKN 140 (321)
T ss_dssp --------TEEEEE-ETTEEEEEEEETTSS------EEEE---------------------EEE-BSSSEEEEEE--ETT
T ss_pred --------CEEEEe-ecCEEEEEEccCccc------chhh---------------------heecceEEEEEEec--ccc
Confidence 243333 358999999876430 0000 01111123444444 466
Q ss_pred EEEEEecCCeEEEEECCC-CceEEEEe--cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-------Cc-e---EE
Q 048801 559 FVLAAIMDCRICVWNAVD-GSLVHSLT--GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE-------GT-P---IR 624 (1715)
Q Consensus 559 ~LaTgs~DGtI~IWDl~s-g~~l~tL~--gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t-------gk-~---l~ 624 (1715)
+|++|..-..|.++.... +..+..+. .....++++.|-+++ ..++.+..+|.|.++.... +. . +.
T Consensus 141 ~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~ 219 (321)
T PF03178_consen 141 YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERIS 219 (321)
T ss_dssp EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEE
T ss_pred EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCcccccccccceeEE
Confidence 999999888888775443 33233332 234567888887644 5888899999999998752 22 2 23
Q ss_pred EEEcccceEEEE---EEcC--CCC------EEEEEeCCCeEEEE
Q 048801 625 IYEIGRFKLVDG---KFSP--DGT------SIVLSDDVGQIYLL 657 (1715)
Q Consensus 625 tl~~h~~~V~sv---afSP--DG~------~LAsgs~DG~I~IW 657 (1715)
.+.. ...|+++ ++.| .+. .++.++.+|.|.+.
T Consensus 220 ~f~l-g~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 220 SFHL-GDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEC-CCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 3332 2346665 5555 222 47788888988844
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.054 Score=71.54 Aligned_cols=101 Identities=22% Similarity=0.379 Sum_probs=77.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcE-EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEE
Q 048801 255 GRFVITGSDDRLVKIWSMETAFC-LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAI 333 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~-l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsL 333 (1715)
+.+++.|++.|.|-..|+.+.-. +..=..-.++|++++|+.+|.+++.|-.+|.|.+||+..+..++.+..|..+++++
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 45788898889999988765311 11222346799999999999999999999999999999999999998887777666
Q ss_pred Eec---CCCCcceEEEEecCCCcEEEEecC
Q 048801 334 AFS---PRPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 334 afS---Pdg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
-+. .++. .++++...|. +|.+.
T Consensus 179 i~v~~t~~nS---~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 179 IFVGRTSQNS---KLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEeCCCc---EEEEccCCCc--eEEEE
Confidence 544 3333 6788877776 66653
|
|
| >KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.012 Score=76.27 Aligned_cols=79 Identities=19% Similarity=0.261 Sum_probs=63.1
Q ss_pred hHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHhhc
Q 048801 1636 IQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1636 ~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
|.+++....-++|+--+-.|||+.|++.||.+++|-.++..|.|+..++.||+.||.++..=.+.|..|.+.|..+++.
T Consensus 627 f~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~~~y~k~~~~le~~~~~k~~~ 705 (720)
T KOG1472|consen 627 FLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSDTQYYKCAQALEKFFLFKLNE 705 (720)
T ss_pred ccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCccchheecccchhhhhcchhhh
Confidence 3333333333444444444447899999999999999999999999999999999999999999999999998887764
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.93 Score=56.46 Aligned_cols=143 Identities=10% Similarity=0.119 Sum_probs=97.3
Q ss_pred CCCEEE-EEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCC--E-----EEEEeCCCeeEEEECCCC-C-ceEEE
Q 048801 254 SGRFVI-TGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT--L-----VASASNDFVIRVWRLPDG-L-PISVL 323 (1715)
Q Consensus 254 DG~~La-TGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~--l-----LASGS~DGtIrVWDl~tg-~-~l~~L 323 (1715)
+.++|+ ++.....|+-.|++.|+.+....-|.. |+-+.+.|+++ . -+.|-.|..|.-||.+-. . .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 344444 445556788889999999999987776 88888888653 1 234556788999997632 2 23333
Q ss_pred eCCC----CCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcc
Q 048801 324 RGHT----GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399 (1715)
Q Consensus 324 ~gH~----~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~ 399 (1715)
.+|. ....|.+-..+| ++++||.+|.|++||- .+....+ ...+-+.+
T Consensus 423 q~kqy~~k~nFsc~aTT~sG----~IvvgS~~GdIRLYdr-i~~~AKT------------------------AlPgLG~~ 473 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG----YIVVGSLKGDIRLYDR-IGRRAKT------------------------ALPGLGDA 473 (644)
T ss_pred eccccccccccceeeecCCc----eEEEeecCCcEEeehh-hhhhhhh------------------------cccccCCc
Confidence 3332 345677766666 8999999999999986 3332111 11223677
Q ss_pred eeEEEEccCCCeEEEecCCCeEEEEeCC
Q 048801 400 ILCCAYNANGTVFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 400 VtslafSpdG~~LatGs~DG~IrVWDl~ 427 (1715)
|..|..+.+|++|++.+ +.++.+.++.
T Consensus 474 I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 474 IKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 99999999999988665 5677777764
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=1.4 Score=57.98 Aligned_cols=71 Identities=10% Similarity=0.100 Sum_probs=43.8
Q ss_pred CCCEEEEEecC------CeEEEEECCC-Cc--eEEEEecCCCCeEEEEEccCCCcEEEEEeCCC--cEEEEECCCCceEE
Q 048801 556 DNRFVLAAIMD------CRICVWNAVD-GS--LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDG--RTIVWDIWEGTPIR 624 (1715)
Q Consensus 556 DG~~LaTgs~D------GtI~IWDl~s-g~--~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DG--tI~VWDl~tgk~l~ 624 (1715)
+|++.++|+.+ ..|..||..+ .+ .+..+.........+++ ++++.++||.|| .+-.||..+.+-..
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEEeeecceeehhhcCcccccccc
Confidence 67777777754 2467899876 33 33334333333333333 779999999998 67778877766544
Q ss_pred EEEcc
Q 048801 625 IYEIG 629 (1715)
Q Consensus 625 tl~~h 629 (1715)
....|
T Consensus 540 ~~~~~ 544 (557)
T PHA02713 540 ICHQH 544 (557)
T ss_pred hhhhc
Confidence 44433
|
|
| >KOG1786 consensus Lysosomal trafficking regulator LYST and related BEACH and WD40 repeat proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.01 Score=81.90 Aligned_cols=54 Identities=13% Similarity=0.279 Sum_probs=46.2
Q ss_pred hhhcccccccccchhHHHHHHHHhhccCchh-------------------hHHHHHHHHHHhcCCCcccccccc
Q 048801 36 DMVANQVVEADVDLREVYFLIIHFLSSGPCQ-------------------RTLGLLWNELLEHQLLPRRYHAWF 90 (1715)
Q Consensus 36 ~~~~~~~~dv~~~i~ElyfLi~~fL~~gp~~-------------------~~~~~L~ReALESeyVS~~LH~WF 90 (1715)
+++-..+.||+||+| +||+|+.+-+.+++. +.|..+||+||||+||+.++|+|+
T Consensus 1008 ~~~~~s~td~kel~p-~f~~pe~l~n~~~~d~g~~qn~~~~~~~~~~~~~~~~i~~hr~al~s~~v~~~~~~~i 1080 (1081)
T KOG1786|consen 1008 LASIESSTDVKELIP-FFYLPEFLRNRNGFDFGERQNGERVNDVVLRGDPRSFILIHRQALESEYVSSNLHTWI 1080 (1081)
T ss_pred ccccccccchhhccc-cccCcceeecCCccccCcccCCCcccceeeccchHHHHHHHHHhhhcccccccceecc
Confidence 344456679999999 999999988776554 789999999999999999999994
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.71 E-value=2.1 Score=50.18 Aligned_cols=200 Identities=10% Similarity=-0.017 Sum_probs=109.7
Q ss_pred ceeEEEEcCCCCC-eEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCcEEEEecCCCC-CeEEEEECCCCCEEEEEeCCCe
Q 048801 233 MQNIKKLRGHRDA-VYCAIFDRSGRFVITGSDDR--LVKIWSMETAFCLASCRGHEG-DITDLAVSSNNTLVASASNDFV 308 (1715)
Q Consensus 233 ~k~l~~L~GH~~~-Vt~VafSpDG~~LaTGS~DG--tIrIWDl~tgk~l~tL~gHs~-~VtsLafSpDg~lLASGS~DGt 308 (1715)
.+.+.++...... ...+.|..+|.++-+.|.-| .|+.+|+.+|+.+....-... ---.|++. ++++..-.=.++.
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSE
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCe
Confidence 4555555433333 34677878888888887665 799999999988765432111 11223333 2333333445789
Q ss_pred eEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCC
Q 048801 309 IRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 309 IrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
..+||..+.+.+.++. ..+.=+.|+ .++. .|+.......|.++|..+.+....+.+.....
T Consensus 112 ~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~---~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~------------- 172 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFP-YPGEGWGLT--SDGK---RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGR------------- 172 (264)
T ss_dssp EEEEETTTTEEEEEEE--SSS--EEE--ECSS---CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTE-------------
T ss_pred EEEEccccceEEEEEe-cCCcceEEE--cCCC---EEEEECCccceEEECCcccceEEEEEEEECCE-------------
Confidence 9999999998888886 345667777 3444 46666667889999988777666554421110
Q ss_pred CCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee------cCCCCCeeEEEEccCc
Q 048801 389 PSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL------SGHENDVNYVQFSGCA 460 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l------~gH~~~V~sLafspdg 460 (1715)
.-..+.-+.|- +|.+.|=.-....|...|..++.+............. ....+-.+.|++.|..
T Consensus 173 -------pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~ 242 (264)
T PF05096_consen 173 -------PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPET 242 (264)
T ss_dssp -------E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTT
T ss_pred -------ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCC
Confidence 01224445554 6666665555666777777776542211100000000 0114567889998875
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=2 Score=56.52 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=63.0
Q ss_pred CCCCeEEEEECCCCCEEEEEe------CCC--eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCC-CcE
Q 048801 284 HEGDITDLAVSSNNTLVASAS------NDF--VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD-GTC 354 (1715)
Q Consensus 284 Hs~~VtsLafSpDg~lLASGS------~DG--tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D-GtV 354 (1715)
....+.+.+++|||+.+|... .|. .|.+++. .+.. ..+.. ....+.-.|+|++. .|++.... ..+
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~---~lw~v~dg~~~~ 421 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDAD---AVWVVVDGNTVV 421 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCC---ceEEEecCcceE
Confidence 334678999999999887765 244 4444454 2333 33332 22388899999977 44444322 223
Q ss_pred EEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEE
Q 048801 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARV 423 (1715)
Q Consensus 355 rIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrV 423 (1715)
++.+-.....+..+.... ..... .....|..+.|||||..++... +|.|.|
T Consensus 422 ~v~~~~~~gql~~~~vd~---------------ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 422 RVIRDPATGQLARTPVDA---------------SAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred EEeccCCCceEEEEeccC---------------chhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 333221111111111100 00000 1234599999999999887765 477766
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=1.6 Score=57.24 Aligned_cols=91 Identities=12% Similarity=-0.007 Sum_probs=48.8
Q ss_pred eEEEEECCCCceEE--EEecCCCCeEEEEEccCCCcEEEEEeCCC------cEEEEECCC-Cc--eEEEEEcccceEEEE
Q 048801 568 RICVWNAVDGSLVH--SLTGHSASSYVLDVHPFNPRIAMSAGYDG------RTIVWDIWE-GT--PIRIYEIGRFKLVDG 636 (1715)
Q Consensus 568 tI~IWDl~sg~~l~--tL~gH~~~V~sLafSP~dg~lLaSgs~DG------tI~VWDl~t-gk--~l~tl~~h~~~V~sv 636 (1715)
.|..||..+.+-.. .+.........+++ ++.+.+.||.++ .|..||..+ .+ .+..+.........+
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~---~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~ 509 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSH---KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI 509 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEE---CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE
Confidence 47778877654322 22111111112222 567777887652 467888876 33 334443222222222
Q ss_pred EEcCCCCEEEEEeCCC--eEEEEECCCCc
Q 048801 637 KFSPDGTSIVLSDDVG--QIYLLNTGQGE 663 (1715)
Q Consensus 637 afSPDG~~LAsgs~DG--~I~IWdl~tGe 663 (1715)
.-+|+..++|+.+| .+..||..+++
T Consensus 510 --~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 510 --LHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred --EECCEEEEEeeecceeehhhcCccccc
Confidence 23788888998888 56666666654
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=94.31 E-value=1 Score=45.88 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=50.1
Q ss_pred eEEEEECC---CC-CEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEec
Q 048801 288 ITDLAVSS---NN-TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359 (1715)
Q Consensus 288 VtsLafSp---Dg-~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl 359 (1715)
|++|++.. || +.|++||.|..|+||+- ...+..+. -...|++|+-...+ .++.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~~----~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGGG----RFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCCC----EEEEEecCCEEEEEeC
Confidence 66777765 33 68999999999999984 35666666 45678888877764 6899999999999864
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.14 E-value=2.7 Score=55.34 Aligned_cols=64 Identities=14% Similarity=0.225 Sum_probs=39.0
Q ss_pred CCCCEEEEEecCC-----eEEEEECCCCceEEE--EecCCCCeEEEEEccCCCcEEEEEeCCC-----cEEEEECCCCc
Q 048801 555 LDNRFVLAAIMDC-----RICVWNAVDGSLVHS--LTGHSASSYVLDVHPFNPRIAMSAGYDG-----RTIVWDIWEGT 621 (1715)
Q Consensus 555 PDG~~LaTgs~DG-----tI~IWDl~sg~~l~t--L~gH~~~V~sLafSP~dg~lLaSgs~DG-----tI~VWDl~tgk 621 (1715)
-++.+.++|+.|+ +|..||..+.+.... +......+..+. .++.+.+.||.|| +|..||..+.+
T Consensus 474 ~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~---~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 474 LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV---LGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE---ECCEEEEEecccCccccceeEEcCCCCCc
Confidence 3778888888776 377788876554332 222222222233 3778888999887 45666655443
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.11 E-value=2.5 Score=55.59 Aligned_cols=103 Identities=11% Similarity=0.103 Sum_probs=56.5
Q ss_pred CCCEEEEEecCC------eEEEEECCCCceEE--EEecCCCCeEEEEEccCCCcEEEEEeCCCc-----EEEEECCCCce
Q 048801 556 DNRFVLAAIMDC------RICVWNAVDGSLVH--SLTGHSASSYVLDVHPFNPRIAMSAGYDGR-----TIVWDIWEGTP 622 (1715)
Q Consensus 556 DG~~LaTgs~DG------tI~IWDl~sg~~l~--tL~gH~~~V~sLafSP~dg~lLaSgs~DGt-----I~VWDl~tgk~ 622 (1715)
+|.+.++|+.++ +|..||..+.+... .+..-..... ++. .++.+.+.||.||. |..+|..+.+.
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV--LNGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE--ECCEEEEECCccCCCccceEEEEcCCCCce
Confidence 788888888655 47788887754332 2211111111 222 26788889998873 66788766544
Q ss_pred EEE--EEcccceEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCc
Q 048801 623 IRI--YEIGRFKLVDGKFSPDGTSIVLSDDVG-----QIYLLNTGQGE 663 (1715)
Q Consensus 623 l~t--l~~h~~~V~svafSPDG~~LAsgs~DG-----~I~IWdl~tGe 663 (1715)
... .......+. ...-++...|+|+.|| +|..||..+++
T Consensus 504 ~~v~~m~~~rs~~g--~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 504 TMVAPMTSPRSAVG--VVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred eEcccCcccccccc--EEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 333 221111111 2233566677777665 45556555543
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.73 E-value=11 Score=43.02 Aligned_cols=46 Identities=4% Similarity=0.024 Sum_probs=41.2
Q ss_pred EEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEc
Q 048801 551 IVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVH 596 (1715)
Q Consensus 551 lafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafS 596 (1715)
+++..+|.+.++.-..++|...|..+|+.+..+.-....|++++|-
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 4557789999989899999999999999999999889999999994
|
|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.054 Score=71.30 Aligned_cols=101 Identities=20% Similarity=0.247 Sum_probs=82.3
Q ss_pred HHHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhc
Q 048801 1611 ESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESY 1690 (1715)
Q Consensus 1611 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~ 1690 (1715)
....++++...+...+ .-.+....|..+..--.+++|...+..|++...|+++++|..|..+..+..|+.+|+.||++|
T Consensus 1027 ~~~~~i~~~~~~~~~~-~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~ 1105 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDS-AGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTY 1105 (1157)
T ss_pred HHHHHHHHHHHhcccc-cccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhh
Confidence 4566777766666553 223334556777677778999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHh
Q 048801 1691 FIKNAALSAKVERLRDWFNRTL 1712 (1715)
Q Consensus 1691 n~~~~~i~~~~~~l~~~~~~~i 1712 (1715)
|+-++.|-.-|..|...+..+.
T Consensus 1106 ~~egs~~y~d~~~l~~~~~~~~ 1127 (1157)
T KOG0386|consen 1106 NEEGSRVYEDAIVLQSVFKSAR 1127 (1157)
T ss_pred ccCCceechhHHHHHHHHhhhH
Confidence 9999988888887777766543
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.71 E-value=6.4 Score=46.56 Aligned_cols=130 Identities=8% Similarity=0.066 Sum_probs=89.0
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeC-CCCCeEEEEecCCCCcceEEEEecCCCcEEEEec
Q 048801 281 CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRG-HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359 (1715)
Q Consensus 281 L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~g-H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl 359 (1715)
+.|-...|.++.|+|+.+.|++......-.||=-.+|..++++.- .-...-.|.+..++. +.++--.++.+.++.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~---fvi~dER~~~l~~~~v 157 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ---FVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE---EEEEehhcceEEEEEE
Confidence 455566699999999999999998888888888788998888752 123445677777765 6677777888888877
Q ss_pred CCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCC
Q 048801 360 RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 360 ~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t 428 (1715)
..+..+...... ..+.......+...-.++|.|....|.++-+-.-+.||.+..
T Consensus 158 d~~t~~~~~~~~---------------~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 158 DADTTVISAKVQ---------------KIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred cCCccEEeccce---------------EEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 655322211110 000001111145578899999988888888888888887753
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=93.66 E-value=37 Score=45.93 Aligned_cols=115 Identities=7% Similarity=0.024 Sum_probs=68.8
Q ss_pred CCeEEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC------CeeEEE
Q 048801 244 DAVYCAIFDRSGRFVITGSD-----DRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND------FVIRVW 312 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~-----DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D------GtIrVW 312 (1715)
-.+..+.++|||++|+.+.+ ...|++-|+.+|..+...-.... ..++|++|++.|+.+..+ ..|++|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 44677889999999987643 23688999998864433221222 469999999876655432 367888
Q ss_pred ECCCC--CceEEEeCCCCCeE-EEEecCCCCcceEEEEecCCCcEEEEecC
Q 048801 313 RLPDG--LPISVLRGHTGAVT-AIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 313 Dl~tg--~~l~~L~gH~~~Vt-sLafSPdg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
++.++ +....+........ .+..+.++.....-.....++.+.+|+..
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 88887 44444543333333 33334466532111122334678888853
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.53 E-value=3.6 Score=48.05 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=65.6
Q ss_pred EEEEcCCC-CEEEEEeCCCc-EEEEeCCCCcEEEEecCCCCC--eEEEEECCCCCEEEEEeCC-----CeeEEEECCCC-
Q 048801 248 CAIFDRSG-RFVITGSDDRL-VKIWSMETAFCLASCRGHEGD--ITDLAVSSNNTLVASASND-----FVIRVWRLPDG- 317 (1715)
Q Consensus 248 ~VafSpDG-~~LaTGS~DGt-IrIWDl~tgk~l~tL~gHs~~--VtsLafSpDg~lLASGS~D-----GtIrVWDl~tg- 317 (1715)
.++|+|.- +-++.+-.-|+ ..++|..+++...++...++. --.=.||+||.+|+..-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 35677743 44555655554 567888877766654322211 1123699999999886443 78999998754
Q ss_pred CceEEEeCCCCCeEEEEecCCCCcceEEEEe
Q 048801 318 LPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348 (1715)
Q Consensus 318 ~~l~~L~gH~~~VtsLafSPdg~~~~~LaSg 348 (1715)
..+..+..|.-.-..+.|.+|+. .|+.+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGr---tlvva 179 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGR---TLVVA 179 (366)
T ss_pred ceecccccCCcCcceeEEecCCc---EEEEe
Confidence 45667778888888999999997 45544
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.18 Score=66.81 Aligned_cols=98 Identities=9% Similarity=0.126 Sum_probs=74.7
Q ss_pred CCCEEEEEecCCeEEEEECCCC-ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceE-
Q 048801 556 DNRFVLAAIMDCRICVWNAVDG-SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKL- 633 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl~sg-~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V- 633 (1715)
.+.+++.|+..|.|-..|.... .+...=..-.++|++++|+. ++.+++.|-.+|.|.+||+..++.++.+..+..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 5667888999999988887542 11122223467899999988 88899999999999999999999999888665554
Q ss_pred --EEEEEcCCCCEEEEEeCCCeE
Q 048801 634 --VDGKFSPDGTSIVLSDDVGQI 654 (1715)
Q Consensus 634 --~svafSPDG~~LAsgs~DG~I 654 (1715)
..+.+..++..+.+++..|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCce
Confidence 445666777788888888863
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=93.37 E-value=2 Score=50.62 Aligned_cols=157 Identities=17% Similarity=0.138 Sum_probs=92.5
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcEEEE-ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE-CCCCCceE
Q 048801 245 AVYCAIFDRSGRFVITGS-DDRLVKIWSMETAFCLAS-CRGHEGDITDLAVSSNNTLVASASNDFVIRVWR-LPDGLPIS 321 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS-~DGtIrIWDl~tgk~l~t-L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD-l~tg~~l~ 321 (1715)
.+.+.++++||..+|... .++.-.||-...+..... +.+ ..++...|++++.+.+....+...+++. ..++....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 688899999999877665 233333443333333333 233 3788899999988777777677777774 33443222
Q ss_pred -EEeC--CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCc
Q 048801 322 -VLRG--HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH 398 (1715)
Q Consensus 322 -~L~g--H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~ 398 (1715)
.+.. -.+.|+.+.++||+....+++....++.|.+--+.....-....+ ..+.........
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l----------------~~~~~~~~~~~~ 166 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL----------------TGPRRVAPPLLS 166 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCccee----------------ccceEecccccC
Confidence 1211 112899999999998654444445567787766543321100000 001111112245
Q ss_pred ceeEEEEccCCCeEEEecCCC
Q 048801 399 QILCCAYNANGTVFVTGSSDT 419 (1715)
Q Consensus 399 ~VtslafSpdG~~LatGs~DG 419 (1715)
.++.++|.+++.+++.+...+
T Consensus 167 ~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 167 DVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred cceeeeecCCCEEEEEeCCCC
Confidence 689999999998887776544
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.08 E-value=47 Score=45.37 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=50.6
Q ss_pred CCCCeEEEEECCCC------CEEEEEeCCCeeEEEECCCCCceEEEe--CCCCCeEEEEecCCCCc------ceEEEEec
Q 048801 284 HEGDITDLAVSSNN------TLVASASNDFVIRVWRLPDGLPISVLR--GHTGAVTAIAFSPRPSA------IYQLLSSS 349 (1715)
Q Consensus 284 Hs~~VtsLafSpDg------~lLASGS~DGtIrVWDl~tg~~l~~L~--gH~~~VtsLafSPdg~~------~~~LaSgS 349 (1715)
-...|.|+++.++. ++++.|+.|+++++..+....++..+. +-...+.++.+-+.... ..+|.+|-
T Consensus 581 l~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL 660 (1205)
T KOG1898|consen 581 LSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGL 660 (1205)
T ss_pred eceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEecc
Confidence 35678899998865 689999999999999998666666553 44455555555443211 23677787
Q ss_pred CCCcEEEE
Q 048801 350 DDGTCRIW 357 (1715)
Q Consensus 350 ~DGtVrIW 357 (1715)
.+|.+.-.
T Consensus 661 ~NGvllR~ 668 (1205)
T KOG1898|consen 661 RNGVLLRF 668 (1205)
T ss_pred cccEEEEE
Confidence 77766544
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.85 E-value=9.2 Score=45.28 Aligned_cols=172 Identities=10% Similarity=0.128 Sum_probs=115.9
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecC-CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRG-HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG 317 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~g-Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg 317 (1715)
+.|-...|.++.|+|+.+.|++....+.-.||=..+|..+.++.- .-...-.|.+..+|+++++-=.++.+.+..+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 445566699999999999999998888888888888999888642 1233456788888888888778899999888765
Q ss_pred CceEEEe---------CC-CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 318 LPISVLR---------GH-TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 318 ~~l~~L~---------gH-~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
..+..+. .+ ....-.++|.|... .|+.+-.-.-+.|+.+..+........ ..
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~---~l~~aKEr~P~~I~~~~~~~~~l~~~~---------------~~ 222 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH---RLFVAKERNPIGIFEVTQSPSSLSVHA---------------SL 222 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCc---eEEEEEccCCcEEEEEecCCccccccc---------------cc
Confidence 3322211 12 55678899999987 677888878888887663321111100 11
Q ss_pred CCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCC
Q 048801 388 GPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t 428 (1715)
.+.......-..|.++.|++ .+.+||.+.+++.+.-.|...
T Consensus 223 ~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 223 DPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred CcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 11111122234577888886 556777777788887777653
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.23 Score=56.09 Aligned_cols=99 Identities=12% Similarity=0.112 Sum_probs=60.1
Q ss_pred CCCEEEEEecCCeEEEEECCC-CceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEE
Q 048801 556 DNRFVLAAIMDCRICVWNAVD-GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLV 634 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl~s-g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~ 634 (1715)
-+..|++|+.+|.|++|+..- |.....+..-...|-++...-.++.+..+++.||.|+.|++.-++.+.....|..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~--- 145 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF--- 145 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccC---
Confidence 356788999999999998752 1111111122233333332223445888999999999999988887776665552
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 635 DGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 635 svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
-++..+++.+.++.|.+|++..+
T Consensus 146 -----~~~e~~ivv~sd~~i~~a~~S~d 168 (238)
T KOG2444|consen 146 -----ESGEELIVVGSDEFLKIADTSHD 168 (238)
T ss_pred -----CCcceeEEecCCceEEeeccccc
Confidence 33444444445555555554444
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.70 E-value=11 Score=45.81 Aligned_cols=118 Identities=16% Similarity=0.084 Sum_probs=72.0
Q ss_pred CeeEEEeCCCCCEEEEEec-----------CCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 048801 547 GVNMIVWSLDNRFVLAAIM-----------DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 547 ~VtslafSPDG~~LaTgs~-----------DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VW 615 (1715)
..+.+...|+|.+.++... -|.|+.++. .+..++.+..|-..-+.|+|||++..++++=+..+.|.-|
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY 190 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence 4566788889888776444 133444443 5777777777666668999999655666666666888888
Q ss_pred ECCC--Cc---e--EEEEEcccceEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCcccc
Q 048801 616 DIWE--GT---P--IRIYEIGRFKLVDGKFSPDGTSIVLSDDVG-QIYLLNTGQGESQK 666 (1715)
Q Consensus 616 Dl~t--gk---~--l~tl~~h~~~V~svafSPDG~~LAsgs~DG-~I~IWdl~tGe~~k 666 (1715)
++.. +. . ...+....+..-.++...+|.+-+++-..| .|.+|+.. |+.+.
T Consensus 191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~ 248 (307)
T COG3386 191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLG 248 (307)
T ss_pred ecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEE
Confidence 8752 21 1 111111223334556666777665444443 77777776 66554
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=92.56 E-value=26 Score=41.29 Aligned_cols=146 Identities=18% Similarity=0.111 Sum_probs=81.5
Q ss_pred CeEEEEECCCCCEEEEEe---CCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEe-cCCC
Q 048801 287 DITDLAVSSNNTLVASAS---NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD-ARYS 362 (1715)
Q Consensus 287 ~VtsLafSpDg~lLASGS---~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWD-l~tg 362 (1715)
.+.+.++++++..+|... ....++++. .+.....+. ....++...|.+++. ..+....+...+++. ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~---~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGW---VWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCC---EEEEEcCCCceEEEEecCCC
Confidence 788999999999887766 233455554 343333332 223788889999965 444445555566663 2222
Q ss_pred CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec---CCCeEEEEeCCCCCccCCCCCce
Q 048801 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS---SDTFARVWSACKSSVEDSEQPIH 439 (1715)
Q Consensus 363 ~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs---~DG~IrVWDl~t~~~~~~~~~~~ 439 (1715)
..... .... ......|..+.+||||..+|.-. .++.|.|--+....-........
T Consensus 99 ~~~~~-~v~~---------------------~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~ 156 (253)
T PF10647_consen 99 TGEPV-EVDW---------------------PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTG 156 (253)
T ss_pred cceeE-Eecc---------------------cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceecc
Confidence 21111 0000 00011799999999998776654 35777776654321100001111
Q ss_pred eeeeecCCCCCeeEEEEccCc
Q 048801 440 ELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 440 ~l~~l~gH~~~V~sLafspdg 460 (1715)
.+.........+..+.|.+++
T Consensus 157 ~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 157 PRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred ceEecccccCcceeeeecCCC
Confidence 222333345688899999875
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=92.39 E-value=22 Score=43.10 Aligned_cols=147 Identities=18% Similarity=0.165 Sum_probs=71.2
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecC
Q 048801 281 CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 281 L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
...-.+.+..+..++||++|++++.-..+.-|+--...-...-+.-...|..|.|.|++. |......|.|++=+..
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~----lw~~~~Gg~~~~s~~~ 215 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN----LWMLARGGQIQFSDDP 215 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-----EEEEETTTEEEEEE-T
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC----EEEEeCCcEEEEccCC
Confidence 345567899999999999998887666666787432222222233567899999999975 4444578888877621
Q ss_pred CCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCcee
Q 048801 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHE 440 (1715)
Q Consensus 361 tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~ 440 (1715)
.. ......+ ..........+..++|.+++...|+|+. |.+ +.....++ ..+.
T Consensus 216 ~~--~~~w~~~------------------~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGk------tW~~ 267 (302)
T PF14870_consen 216 DD--GETWSEP------------------IIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGK------TWQK 267 (302)
T ss_dssp TE--EEEE---------------------B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTS------S-EE
T ss_pred CC--ccccccc------------------cCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCc------cceE
Confidence 11 0111000 0011122445899999999888887765 444 33443332 2222
Q ss_pred eeeecCCCCCeeEEEEccC
Q 048801 441 LDVLSGHENDVNYVQFSGC 459 (1715)
Q Consensus 441 l~~l~gH~~~V~sLafspd 459 (1715)
......-...+..|.|.+.
T Consensus 268 ~~~~~~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 268 DRVGENVPSNLYRIVFVNP 286 (302)
T ss_dssp -GGGTTSSS---EEEEEET
T ss_pred CccccCCCCceEEEEEcCC
Confidence 2223333446777888653
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=91.91 E-value=11 Score=51.18 Aligned_cols=166 Identities=19% Similarity=0.206 Sum_probs=93.2
Q ss_pred ccCceEEEEcCCCeEEEEecCCCccCccccccccc-ccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC--CCCEE
Q 048801 484 FCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRA-YHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL--DNRFV 560 (1715)
Q Consensus 484 ~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP--DG~~L 560 (1715)
.+...|+.++.|+.|.-.|..+++..-.++..... ....+.. ....-..+.-+| .+..|
T Consensus 258 ~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~------------------~~~g~~~~ts~P~V~~g~V 319 (764)
T TIGR03074 258 DCARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGT------------------TPPGYYYPTSPPLVAGTTV 319 (764)
T ss_pred ccCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCc------------------CCCcccccccCCEEECCEE
Confidence 34678889999999999999998765433211000 0000000 000000000111 13345
Q ss_pred EEEec----------CCeEEEEECCCCceEEEEecC---------CCC--------e-EEEEEccCCCcEEEE-E-----
Q 048801 561 LAAIM----------DCRICVWNAVDGSLVHSLTGH---------SAS--------S-YVLDVHPFNPRIAMS-A----- 606 (1715)
Q Consensus 561 aTgs~----------DGtI~IWDl~sg~~l~tL~gH---------~~~--------V-~sLafSP~dg~lLaS-g----- 606 (1715)
++|+. +|.|+-+|+.+|+++..+..- .+. + ..+++.+..+.+++- |
T Consensus 320 IvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd 399 (764)
T TIGR03074 320 VIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPD 399 (764)
T ss_pred EEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCcccc
Confidence 55532 688999999999998877421 011 1 123333322222111 0
Q ss_pred -----------eCCCcEEEEECCCCceEEEEEcccceEEE---------EEEcC-CCC---EEEEEeCCCeEEEEECCCC
Q 048801 607 -----------GYDGRTIVWDIWEGTPIRIYEIGRFKLVD---------GKFSP-DGT---SIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 607 -----------s~DGtI~VWDl~tgk~l~tl~~h~~~V~s---------vafSP-DG~---~LAsgs~DG~I~IWdl~tG 662 (1715)
...+.|.-.|+.+|+....++..+..+++ +.+.. +|+ .|+.++.+|.++++|-.+|
T Consensus 400 ~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG 479 (764)
T TIGR03074 400 QWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG 479 (764)
T ss_pred ccCCccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC
Confidence 13456777899999999888753322221 22333 664 7889999999999999999
Q ss_pred ccccc
Q 048801 663 ESQKD 667 (1715)
Q Consensus 663 e~~k~ 667 (1715)
+.+-.
T Consensus 480 ~~l~~ 484 (764)
T TIGR03074 480 EPIVP 484 (764)
T ss_pred CEEee
Confidence 87643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.89 E-value=13 Score=46.91 Aligned_cols=135 Identities=14% Similarity=0.177 Sum_probs=87.6
Q ss_pred CCCEE-EEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcce----EEEEecCCCcEEEEecCCCCCcceecC
Q 048801 296 NNTLV-ASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIY----QLLSSSDDGTCRIWDARYSQYSPRIYL 370 (1715)
Q Consensus 296 Dg~lL-ASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~----~LaSgS~DGtVrIWDl~tg~~l~~i~~ 370 (1715)
+.++| .++.....++-.|++.|+.+..+.-|.. |+-+.+.|+..... .-+.|-.|..|.-||.+-...- .+..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeee
Confidence 44444 4555566788889999999999886665 88888888765321 1244556788888998622110 0000
Q ss_pred CCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCC
Q 048801 371 PKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEND 450 (1715)
Q Consensus 371 ~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~ 450 (1715)
. ............|++-..+| ++|+|+.+|.|++||-... .....+.+-..+
T Consensus 422 ~------------------q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~---------~AKTAlPgLG~~ 473 (644)
T KOG2395|consen 422 V------------------QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGR---------RAKTALPGLGDA 473 (644)
T ss_pred e------------------eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhh---------hhhhcccccCCc
Confidence 0 00011123446777777676 6888999999999997321 223456778889
Q ss_pred eeEEEEccCc
Q 048801 451 VNYVQFSGCA 460 (1715)
Q Consensus 451 V~sLafspdg 460 (1715)
|..|..+.+|
T Consensus 474 I~hVdvtadG 483 (644)
T KOG2395|consen 474 IKHVDVTADG 483 (644)
T ss_pred eeeEEeeccC
Confidence 9999988876
|
|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.22 Score=67.56 Aligned_cols=77 Identities=23% Similarity=0.419 Sum_probs=68.7
Q ss_pred hHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHh
Q 048801 1636 IQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTL 1712 (1715)
Q Consensus 1636 ~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~~i 1712 (1715)
|...+..-+.++|.--|..||++.|++..|++.+|+.++.+..|+.+|.+||-.||..+-...+-|.++.+.....+
T Consensus 586 f~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~dtv~~r~av~~~e~~~~~~ 662 (1051)
T KOG0955|consen 586 FAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAKDTVYYRAAVRLRELIKKDF 662 (1051)
T ss_pred eeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhccCeehHhhhHHHHhhhhhHH
Confidence 34455566788899999999999999999999999999999999999999999999999999999999998876544
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.53 Score=53.32 Aligned_cols=103 Identities=14% Similarity=0.166 Sum_probs=63.9
Q ss_pred CCEEEEEeCCCcEEEEeCCC-CcEEEEecCCCCCeEE-EEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCC-CCeE
Q 048801 255 GRFVITGSDDRLVKIWSMET-AFCLASCRGHEGDITD-LAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHT-GAVT 331 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~t-gk~l~tL~gHs~~Vts-LafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~-~~Vt 331 (1715)
+.-|+.|+.+|.|.+|...- |.....+..-...|.+ |.--.++.+..+++.||.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 45688899999999998762 1111111222233333 3333466788999999999999998888777777676 4444
Q ss_pred EEEecCCCCcceEEEEe--cCCCcEEEEecC
Q 048801 332 AIAFSPRPSAIYQLLSS--SDDGTCRIWDAR 360 (1715)
Q Consensus 332 sLafSPdg~~~~~LaSg--S~DGtVrIWDl~ 360 (1715)
.+..+..+. .|+++ |.|..++.|++.
T Consensus 150 ~~ivv~sd~---~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 150 ELIVVGSDE---FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEecCCc---eEEeeccccchhhhhcchh
Confidence 444443333 34444 555556666554
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=90.94 E-value=9.4 Score=46.13 Aligned_cols=156 Identities=14% Similarity=0.142 Sum_probs=78.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEEC-CCCC
Q 048801 240 RGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL-PDGL 318 (1715)
Q Consensus 240 ~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl-~tg~ 318 (1715)
.+-.+.+..+..++||++|++++.-....-|+--...-...-+.-...|..|.|+|++.+.+.+ ..|.|++=+. ..+.
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 3445788999999999999998766666778754322222233356789999999998776655 7888888772 1211
Q ss_pred ceEE----EeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 319 PISV----LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 319 ~l~~----L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
.... +....-.+..++|.+++. ..+ ++..|+|.+ ....|+.=..... ..
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~---~wa-~gg~G~l~~-S~DgGktW~~~~~----------------------~~ 272 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNE---IWA-VGGSGTLLV-STDGGKTWQKDRV----------------------GE 272 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS----EEE-EESTT-EEE-ESSTTSS-EE-GG----------------------GT
T ss_pred ccccccCCcccCceeeEEEEecCCCC---EEE-EeCCccEEE-eCCCCccceECcc----------------------cc
Confidence 1111 112233578999998865 444 455565433 3333331111100 00
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCeEEEE
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSDTFARVW 424 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~DG~IrVW 424 (1715)
.-...+..+.|..+.+-+|.| .+|.|.-|
T Consensus 273 ~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 273 NVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp TSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 113347788888777777776 57877555
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=90.36 E-value=53 Score=40.37 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=44.1
Q ss_pred CcccccCCCCCeeEEEeCC-------CCCEEEEEecCCeEEEEECCCCceEE---E-EecCCCCeEEEEEccCCCcEEEE
Q 048801 537 PRQRLLPTPRGVNMIVWSL-------DNRFVLAAIMDCRICVWNAVDGSLVH---S-LTGHSASSYVLDVHPFNPRIAMS 605 (1715)
Q Consensus 537 ~~~~l~~h~~~VtslafSP-------DG~~LaTgs~DGtI~IWDl~sg~~l~---t-L~gH~~~V~sLafSP~dg~lLaS 605 (1715)
+...+..| ..+..+.|-. .|.+|++.-..+.|....+..+..+. . +......+..|++.| ++.++++
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p-DG~Lyv~ 322 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP-DGALYVS 322 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET-TSEEEEE
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC-CCeEEEE
Confidence 33334434 4566666653 55677766667788888876553322 2 223455789999999 6777777
Q ss_pred EeCCCcEE
Q 048801 606 AGYDGRTI 613 (1715)
Q Consensus 606 gs~DGtI~ 613 (1715)
...+|.|.
T Consensus 323 ~d~~G~iy 330 (331)
T PF07995_consen 323 DDSDGKIY 330 (331)
T ss_dssp E-TTTTEE
T ss_pred ECCCCeEe
Confidence 77788764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.15 E-value=2.7 Score=56.65 Aligned_cols=140 Identities=9% Similarity=-0.009 Sum_probs=85.7
Q ss_pred CCeEEEEECCCCCEEEEE--eCCCeeEEEECCCCCc--------eE---EEeCCCCCeEEEEecCCCCcceEEEEecCCC
Q 048801 286 GDITDLAVSSNNTLVASA--SNDFVIRVWRLPDGLP--------IS---VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG 352 (1715)
Q Consensus 286 ~~VtsLafSpDg~lLASG--S~DGtIrVWDl~tg~~--------l~---~L~gH~~~VtsLafSPdg~~~~~LaSgS~DG 352 (1715)
-+|..+..++|++..++. +.+-.|.++|+.+-.. ++ +.......+.++.|.|.-.. ..+.+..|+
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~--n~av~l~dl 178 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPL--NSAVDLSDL 178 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccc--hhhhhcccc
Confidence 366677777887665554 3444788999865321 11 11222345678889887543 466777888
Q ss_pred cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCcc
Q 048801 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVE 432 (1715)
Q Consensus 353 tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~ 432 (1715)
.|++..+....... .........+|++|+|.|..+++|-..|++.-|...-..
T Consensus 179 sl~V~~~~~~~~~v-------------------------~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei-- 231 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNV-------------------------TSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI-- 231 (1405)
T ss_pred chhhhhhhhhhhhh-------------------------cccCcccceeeEEeccccceeeEecCCCeEEEeecccce--
Confidence 88887654222110 011224458999999999999999999999888764210
Q ss_pred CCCCCceeeeeecCC-CCCeeEEEEccC
Q 048801 433 DSEQPIHELDVLSGH-ENDVNYVQFSGC 459 (1715)
Q Consensus 433 ~~~~~~~~l~~l~gH-~~~V~sLafspd 459 (1715)
...+...... ...|.+|.|...
T Consensus 232 -----k~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 232 -----KSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred -----eecccCCCcCCCcceeEEEEecc
Confidence 0011111111 457889998764
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.98 E-value=19 Score=41.23 Aligned_cols=174 Identities=13% Similarity=0.158 Sum_probs=98.0
Q ss_pred EEEEEeCCCcEEEEe--CCCCcEEEEecC-----CCCCeEEEEECCCCCEEEEEeCC---------CeeEEEECCCCCce
Q 048801 257 FVITGSDDRLVKIWS--METAFCLASCRG-----HEGDITDLAVSSNNTLVASASND---------FVIRVWRLPDGLPI 320 (1715)
Q Consensus 257 ~LaTGS~DGtIrIWD--l~tgk~l~tL~g-----Hs~~VtsLafSpDg~lLASGS~D---------GtIrVWDl~tg~~l 320 (1715)
+.+.++.--.|.=|| .+.....+++.. .....++-..+|+|++.+-.-.| |.++.|-. +..+
T Consensus 73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v 150 (310)
T KOG4499|consen 73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQV 150 (310)
T ss_pred EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEecc--CCCc
Confidence 344444433455566 233344444321 13455666789999984432222 44555543 2233
Q ss_pred EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEe--cCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCc
Q 048801 321 SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD--ARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH 398 (1715)
Q Consensus 321 ~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWD--l~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~ 398 (1715)
..+...-+--+.|+|..+.+. ..++-+.+-+|.-|| ..+|....+-.+..-. ...+.. ..
T Consensus 151 ~~i~~~v~IsNgl~Wd~d~K~--fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlr-----------k~~~~e-----~~ 212 (310)
T KOG4499|consen 151 ELIWNCVGISNGLAWDSDAKK--FYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLR-----------KSQPFE-----SL 212 (310)
T ss_pred eeeehhccCCccccccccCcE--EEEEccCceEEeeeecCCCcccccCcceeEEec-----------cCCCcC-----CC
Confidence 333333344577899977663 445667777887787 6666644321110000 000000 11
Q ss_pred ceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccC
Q 048801 399 QILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGC 459 (1715)
Q Consensus 399 ~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspd 459 (1715)
.--.+++..+|.+.++.-..|+|...|..++++ +..+.-....|+|++|-..
T Consensus 213 ~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~---------L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 213 EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKI---------LLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCcceEccCCcEEEEEecCcEEEEECCCCCcE---------EEEEEcCCCceEEEEecCC
Confidence 112344566899999998999999999998754 5556666889999999764
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.82 E-value=8.6 Score=50.23 Aligned_cols=64 Identities=6% Similarity=-0.047 Sum_probs=35.0
Q ss_pred CCCEEEEEecC------CeEEEEECCCCceEEE--EecCCCCeEEEEEccCCCcEEEEEeCCC--------cEEEEECCC
Q 048801 556 DNRFVLAAIMD------CRICVWNAVDGSLVHS--LTGHSASSYVLDVHPFNPRIAMSAGYDG--------RTIVWDIWE 619 (1715)
Q Consensus 556 DG~~LaTgs~D------GtI~IWDl~sg~~l~t--L~gH~~~V~sLafSP~dg~lLaSgs~DG--------tI~VWDl~t 619 (1715)
++.+++.|+.+ ..+.+||+.+.+-... +....... +++. . ++.+++.||.++ .+.+||..+
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-H-DGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-E-CCEEEEECCccCCCCCcccceEEEecCCC
Confidence 67777777732 3588899876543221 11111111 1222 2 567777777532 378888876
Q ss_pred Cce
Q 048801 620 GTP 622 (1715)
Q Consensus 620 gk~ 622 (1715)
++-
T Consensus 466 ~~W 468 (534)
T PHA03098 466 NKW 468 (534)
T ss_pred Cce
Confidence 643
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.82 E-value=3 Score=56.20 Aligned_cols=142 Identities=11% Similarity=-0.030 Sum_probs=88.2
Q ss_pred CCCeeEEEeCCCCCEEEEEe--cCCeEEEEECCCCceE-----EEEec------CCCCeEEEEEccCCCcEEEEEeCCCc
Q 048801 545 PRGVNMIVWSLDNRFVLAAI--MDCRICVWNAVDGSLV-----HSLTG------HSASSYVLDVHPFNPRIAMSAGYDGR 611 (1715)
Q Consensus 545 ~~~VtslafSPDG~~LaTgs--~DGtI~IWDl~sg~~l-----~tL~g------H~~~V~sLafSP~dg~lLaSgs~DGt 611 (1715)
.-.|..++..+|+...++.. .+-.|+.||+.+...- .-|.. ...-+.++.|.|.=....+.+..|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 34566677777877665543 3447899998763221 11111 22345677888865566677788999
Q ss_pred EEEEECCCC-ceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc----------ccccceeecCCCcc
Q 048801 612 TIVWDIWEG-TPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK----------DAKYDQFFLGDYRP 680 (1715)
Q Consensus 612 I~VWDl~tg-k~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k----------~~~~~~~fs~D~r~ 680 (1715)
|.|..+..- ..+..+. ....+++++|+|.|+.|++|...|.+.-|.. +++... ..+..+.|...+..
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeE
Confidence 999877532 2223333 3446789999999999999999999988875 333221 11223456666666
Q ss_pred EEEcCCCC
Q 048801 681 LIRDSLGN 688 (1715)
Q Consensus 681 L~~d~~g~ 688 (1715)
|++-.++.
T Consensus 258 lvvy~n~t 265 (1405)
T KOG3630|consen 258 LVVYGNVT 265 (1405)
T ss_pred EEEecccc
Confidence 66544433
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=89.60 E-value=40 Score=45.63 Aligned_cols=88 Identities=10% Similarity=0.140 Sum_probs=55.1
Q ss_pred CcceeEEEEccCCCeEEEecCCCeEEEEeCCC----CCccCCCCCceeee-------eecCCCCCeeEEEEccCcccccc
Q 048801 397 SHQILCCAYNANGTVFVTGSSDTFARVWSACK----SSVEDSEQPIHELD-------VLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 397 ~~~VtslafSpdG~~LatGs~DG~IrVWDl~t----~~~~~~~~~~~~l~-------~l~gH~~~V~sLafspdg~as~~ 465 (1715)
...|..|.++++|.+|+..|..|.+.+.=.+. +..........+.. ....+...|..+.|+|.+.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~---- 159 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE---- 159 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC----
Confidence 45799999999999999988866544432221 11111111111110 1123445788899998651
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCc
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 507 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~ 507 (1715)
.+..|+.-..|+++++||+....
T Consensus 160 -------------------~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 160 -------------------SDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred -------------------CCCeEEEEecCCEEEEEecCCCC
Confidence 24688899999999999997544
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=89.48 E-value=29 Score=43.64 Aligned_cols=115 Identities=12% Similarity=0.038 Sum_probs=58.1
Q ss_pred CCCEEEEEe-CCCcEEEEeCCC----CcEEEEecC---CC----CCeEEEEECCCCCEEEEEe--C----CCeeEEEECC
Q 048801 254 SGRFVITGS-DDRLVKIWSMET----AFCLASCRG---HE----GDITDLAVSSNNTLVASAS--N----DFVIRVWRLP 315 (1715)
Q Consensus 254 DG~~LaTGS-~DGtIrIWDl~t----gk~l~tL~g---Hs----~~VtsLafSpDg~lLASGS--~----DGtIrVWDl~ 315 (1715)
+.++|+..+ ..+.|.|.|+.+ -++.+++.. +. ..-..+..-|+|.+++|+- . -|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777776 678999999874 344555442 11 1223344457898888852 2 2568888877
Q ss_pred CCCceEEEeCC---CCCeEEEEecCCCCcceEEEEecC--------------------CCcEEEEecCCCCCcceecCC
Q 048801 316 DGLPISVLRGH---TGAVTAIAFSPRPSAIYQLLSSSD--------------------DGTCRIWDARYSQYSPRIYLP 371 (1715)
Q Consensus 316 tg~~l~~L~gH---~~~VtsLafSPdg~~~~~LaSgS~--------------------DGtVrIWDl~tg~~l~~i~~~ 371 (1715)
+.......... ..--+.+.|.|..+ .++|... ..+|.+||+.+.+.++++.+.
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~n---vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg 241 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHN---VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG 241 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTT---EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCC---EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence 77666665432 22345677777665 6676542 357999999999988888764
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=89.47 E-value=9.8 Score=48.69 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=72.0
Q ss_pred CCCeeEEEeCCC----CCEEEEEecCCeEEEEECC-----CCceEEEEecCCC---C--eEEEEEccCCCcEEEEEeCCC
Q 048801 545 PRGVNMIVWSLD----NRFVLAAIMDCRICVWNAV-----DGSLVHSLTGHSA---S--SYVLDVHPFNPRIAMSAGYDG 610 (1715)
Q Consensus 545 ~~~VtslafSPD----G~~LaTgs~DGtI~IWDl~-----sg~~l~tL~gH~~---~--V~sLafSP~dg~lLaSgs~DG 610 (1715)
-.-|..+.|.|- -..|++.-....|.||.+. .++.+..-..+-. + -..+.||| ...+|+.-....
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~d 134 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARD 134 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCc
Confidence 345888999984 3245556677899999884 2333333222211 1 24568999 555555444444
Q ss_pred cEEEEECCCC-ceE-EEEEcccceEEEEEEcCCCCEEEEE-eCCCeEEEEECCCC
Q 048801 611 RTIVWDIWEG-TPI-RIYEIGRFKLVDGKFSPDGTSIVLS-DDVGQIYLLNTGQG 662 (1715)
Q Consensus 611 tI~VWDl~tg-k~l-~tl~~h~~~V~svafSPDG~~LAsg-s~DG~I~IWdl~tG 662 (1715)
.-.+.++... ..+ ..+ ...+-|.|.+|.+||+.|+++ +..=.-+|||-.+.
T Consensus 135 vSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred eeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 3345565432 223 334 367789999999999998876 45557889996543
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=89.46 E-value=48 Score=44.90 Aligned_cols=79 Identities=15% Similarity=0.203 Sum_probs=54.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeeEEEECC---------CCCce---EEE--------eCCCCCeEEEEecCCCCcceE
Q 048801 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLP---------DGLPI---SVL--------RGHTGAVTAIAFSPRPSAIYQ 344 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DGtIrVWDl~---------tg~~l---~~L--------~gH~~~VtsLafSPdg~~~~~ 344 (1715)
.-.|..|.++++|.+||..+..|.+.+.=.. .|... +++ ..+...|..+.|+|.+.....
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3478899999999999998887654443211 12211 111 134567999999998633338
Q ss_pred EEEecCCCcEEEEecCCCC
Q 048801 345 LLSSSDDGTCRIWDARYSQ 363 (1715)
Q Consensus 345 LaSgS~DGtVrIWDl~tg~ 363 (1715)
|+.-..|+++++||+....
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 8899999999999997544
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.32 E-value=16 Score=44.85 Aligned_cols=153 Identities=12% Similarity=0.049 Sum_probs=87.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEE-EeCCCCcEEEEe-cCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCce
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKI-WSMETAFCLASC-RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI 320 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrI-WDl~tgk~l~tL-~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l 320 (1715)
.+.++++.+.+++.++++|. .|.+.. ++ ..++.-..+ ..-...++++++.++++.+++| ..|.+++=..+.|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 46789999999988777664 454443 22 222322222 3345688999999999887765 4576654334444433
Q ss_pred EEEeC----CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC
Q 048801 321 SVLRG----HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396 (1715)
Q Consensus 321 ~~L~g----H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h 396 (1715)
..... ....+.+++|.+++. ++.++.+|.|.. ....++.-..... ...-
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~----~~~~G~~G~v~~-S~d~G~tW~~~~~----------------------~~~~ 301 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGE----IWAGGGNGTLLV-SKDGGKTWEKDPV----------------------GEEV 301 (334)
T ss_pred ccccCCccccccceeeEEEcCCCC----EEEEcCCCeEEE-eCCCCCCCeECCc----------------------CCCC
Confidence 22221 123578899998764 555666776543 3333331111000 0001
Q ss_pred CcceeEEEEccCCCeEEEecCCCeEEEEeC
Q 048801 397 SHQILCCAYNANGTVFVTGSSDTFARVWSA 426 (1715)
Q Consensus 397 ~~~VtslafSpdG~~LatGs~DG~IrVWDl 426 (1715)
......+.|..++..+++| ..|.|..|+-
T Consensus 302 ~~~~~~~~~~~~~~~~~~G-~~G~il~~~~ 330 (334)
T PRK13684 302 PSNFYKIVFLDPEKGFVLG-QRGVLLRYVG 330 (334)
T ss_pred CcceEEEEEeCCCceEEEC-CCceEEEecC
Confidence 2347778888777777766 5688877654
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=89.24 E-value=0.89 Score=39.26 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=29.6
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 630 RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 630 ~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
...|..++|+|...+||.+..+|.|.|+.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 446889999999999999999999999999 554
|
|
| >KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] | Back alignment and domain information |
|---|
Probab=88.83 E-value=0.25 Score=66.89 Aligned_cols=107 Identities=16% Similarity=0.237 Sum_probs=86.1
Q ss_pred CCCCChHHHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 048801 1605 HPEIDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVML 1684 (1715)
Q Consensus 1605 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~ 1684 (1715)
+|.++.+.+-+. ..++.+...+....+...|..+++.-.-.+|...+..|+++++|.+-..-+=|-++++...||+.|.
T Consensus 1373 nplld~~d~v~~-~~~d~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~ 1451 (1563)
T KOG0008|consen 1373 NPLLDDDDQVAF-FILDNIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIY 1451 (1563)
T ss_pred CcccCccchhhH-hhhhhHHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhc
Confidence 455666555444 5555554444555666778888887777889899999999999999999999988899999999999
Q ss_pred hhhhhccCCChHHHHHHHHHHHHHHHHh
Q 048801 1685 SNAESYFIKNAALSAKVERLRDWFNRTL 1712 (1715)
Q Consensus 1685 ~Na~~~n~~~~~i~~~~~~l~~~~~~~i 1712 (1715)
+|+..||.+++.-..+||.+-+..+..|
T Consensus 1452 ~n~~~~ng~e~~y~~k~~k~~ev~~~~~ 1479 (1563)
T KOG0008|consen 1452 VNSVEYNGAESAYTKKARKIGEVGLANL 1479 (1563)
T ss_pred ccceeecCccccccHHHHHHHHHHHHHH
Confidence 9999999999999999998887766544
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=88.40 E-value=1.3 Score=38.26 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=30.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCc
Q 048801 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP 319 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~ 319 (1715)
...|.+++|+|...+||.|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 5544
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.65 E-value=1 Score=58.91 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=45.1
Q ss_pred eCCCCCEEEEEecCCeEEEEECC-----CCceEEEEecCC-CCeEEEEEccCC------C--cEEEEEe-CCCcEEEEEC
Q 048801 553 WSLDNRFVLAAIMDCRICVWNAV-----DGSLVHSLTGHS-ASSYVLDVHPFN------P--RIAMSAG-YDGRTIVWDI 617 (1715)
Q Consensus 553 fSPDG~~LaTgs~DGtI~IWDl~-----sg~~l~tL~gH~-~~V~sLafSP~d------g--~lLaSgs-~DGtI~VWDl 617 (1715)
+||||..|++++.||.++.|.+. ..++++..+.|. .+-.|.-|+... + .++++++ ....+++|..
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 79999999999999998888653 344566666776 333333333210 1 2334443 3456888987
Q ss_pred CCCceE
Q 048801 618 WEGTPI 623 (1715)
Q Consensus 618 ~tgk~l 623 (1715)
...+|+
T Consensus 323 a~w~Cl 328 (1283)
T KOG1916|consen 323 APWQCL 328 (1283)
T ss_pred cchhhh
Confidence 777776
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.16 E-value=14 Score=48.24 Aligned_cols=64 Identities=9% Similarity=0.009 Sum_probs=34.9
Q ss_pred CCCCEEEEEeCCC------cEEEEeCCCCcEEEE--ecCCCCCeEEEEECCCCCEEEEEeCC-----CeeEEEECCCCC
Q 048801 253 RSGRFVITGSDDR------LVKIWSMETAFCLAS--CRGHEGDITDLAVSSNNTLVASASND-----FVIRVWRLPDGL 318 (1715)
Q Consensus 253 pDG~~LaTGS~DG------tIrIWDl~tgk~l~t--L~gHs~~VtsLafSpDg~lLASGS~D-----GtIrVWDl~tg~ 318 (1715)
.++.+++.||.++ .+..||..+.+-... +.........+. -++.+++.|+.+ ..+.+||..+..
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3456677776542 577888776644221 111111222222 267777888765 347778876653
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=86.63 E-value=82 Score=37.97 Aligned_cols=228 Identities=15% Similarity=0.194 Sum_probs=120.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCC------CC-cEEEEecC-----CCCCeEEEEECCCCC------------EEE
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSME------TA-FCLASCRG-----HEGDITDLAVSSNNT------------LVA 301 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~------tg-k~l~tL~g-----Hs~~VtsLafSpDg~------------lLA 301 (1715)
-+.|+|+|.+.+-++....+...+||.. .. .++-++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 3568899999887777778999999986 12 23334432 234678888875332 256
Q ss_pred EEeCCCeeEEEECCCCCc-----eEEEe-CCCCCe-EEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCC
Q 048801 302 SASNDFVIRVWRLPDGLP-----ISVLR-GHTGAV-TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPP 374 (1715)
Q Consensus 302 SGS~DGtIrVWDl~tg~~-----l~~L~-gH~~~V-tsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~ 374 (1715)
.+++||+|.-|...-+.. ...+. +..+.| ..+++...+...++.++--..++|.++|-.-.... ++..
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~----~~g~- 179 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP----LPGS- 179 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc----CCCC-
Confidence 778999999998533222 12222 112333 45666654332234455566888999875422210 1000
Q ss_pred CCccCccCCCCCCCCCCCC-CCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee--cCCCCCe
Q 048801 375 DAITGKSNVPSNNGPSSSN-GLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL--SGHENDV 451 (1715)
Q Consensus 375 ~~i~g~~~~~~~~~~~~~~-~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l--~gH~~~V 451 (1715)
.. ...++....+.-.. ....-.|+-..-.+++..=+.|..-|.|-+||+.. +.++.+ .+.-+.-
T Consensus 180 --F~-DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G----------~l~~r~as~g~LNaP 246 (336)
T TIGR03118 180 --FI-DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG----------QLLRRVASSGRLNAP 246 (336)
T ss_pred --cc-CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC----------cEEEEeccCCcccCC
Confidence 00 00000000000000 00011122222234444444555668999999864 233333 2223344
Q ss_pred eEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcc
Q 048801 452 NYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGK 511 (1715)
Q Consensus 452 ~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~ 511 (1715)
+.|+..|.... .++..+|+----||+|.+||..+++.++.
T Consensus 247 WG~a~APa~FG--------------------~~sg~lLVGNFGDG~InaFD~~sG~~~g~ 286 (336)
T TIGR03118 247 WGLAIAPESFG--------------------SLSGALLVGNFGDGTINAYDPQSGAQLGQ 286 (336)
T ss_pred ceeeeChhhhC--------------------CCCCCeEEeecCCceeEEecCCCCceeee
Confidence 55666554321 13356777777899999999987664433
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=86.62 E-value=1.4e+02 Score=40.61 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=46.0
Q ss_pred CeEEEEECCCCCEEEEEeC-----CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCC-----CcEEE
Q 048801 287 DITDLAVSSNNTLVASASN-----DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD-----GTCRI 356 (1715)
Q Consensus 287 ~VtsLafSpDg~lLASGS~-----DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D-----GtVrI 356 (1715)
.+..+.+||||++|+.+.. ...|++-|+.+|..+....... -..++|++++.. ++++...+ ..|..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~--~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWT--FYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCE--EEEEEecCCCCCCCEEEE
Confidence 4667889999998887633 2358899998887443222121 256999999874 23332222 35677
Q ss_pred EecCCC
Q 048801 357 WDARYS 362 (1715)
Q Consensus 357 WDl~tg 362 (1715)
|++.++
T Consensus 204 h~lgt~ 209 (686)
T PRK10115 204 HTIGTP 209 (686)
T ss_pred EECCCC
Confidence 777766
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.53 E-value=60 Score=43.05 Aligned_cols=51 Identities=18% Similarity=0.346 Sum_probs=40.8
Q ss_pred CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC
Q 048801 306 DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY 361 (1715)
Q Consensus 306 DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t 361 (1715)
--.|+|+++ +|..+..+....+.+..+.|+.+. .|++...+|++++|++..
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e----eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE----ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCc----eEEEEeccceEEEeecch
Confidence 346888886 677777766555689999999986 588999999999999853
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=85.18 E-value=96 Score=37.42 Aligned_cols=75 Identities=16% Similarity=0.187 Sum_probs=52.3
Q ss_pred CCCCCEEEEEecCCeEEEEECCCCceEEEEe--cCCCCeEEEEEcc-----CCCcEEEEEeCCCcEEEEECCCCceEEEE
Q 048801 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLT--GHSASSYVLDVHP-----FNPRIAMSAGYDGRTIVWDIWEGTPIRIY 626 (1715)
Q Consensus 554 SPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~--gH~~~V~sLafSP-----~dg~lLaSgs~DGtI~VWDl~tgk~l~tl 626 (1715)
.++...=+.|..-|.|-+||+ +|.+++.+. +.-..-+.|+..| ..+.+|+---.||+|..+|..+|+.+..+
T Consensus 209 d~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 209 DADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred CCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeee
Confidence 344444444556678999996 688888773 3333446666544 35678876667999999999999988877
Q ss_pred Ecc
Q 048801 627 EIG 629 (1715)
Q Consensus 627 ~~h 629 (1715)
...
T Consensus 288 ~~~ 290 (336)
T TIGR03118 288 LDP 290 (336)
T ss_pred cCC
Confidence 743
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.38 E-value=1e+02 Score=36.95 Aligned_cols=160 Identities=15% Similarity=0.059 Sum_probs=85.0
Q ss_pred EcCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC
Q 048801 239 LRGHR-DAVYCAIFDRSGRFVITGSDDRLVKIWSMETA--FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 239 L~GH~-~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg--k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~ 315 (1715)
+.||- ..|..+.....-.++.+|-.--.+-+|+.... ..+...-.-.+-+.++.|+. .++..+.++.-++|.|+.
T Consensus 37 ~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse--~yvyvad~ssGL~IvDIS 114 (370)
T COG5276 37 YVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVSE--EYVYVADWSSGLRIVDIS 114 (370)
T ss_pred EeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEecc--cEEEEEcCCCceEEEecc
Confidence 45565 45666655544444444422222345554311 11111222345667778864 467777788889999998
Q ss_pred CCCceEEEeC--CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCC
Q 048801 316 DGLPISVLRG--HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393 (1715)
Q Consensus 316 tg~~l~~L~g--H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~ 393 (1715)
+...-..+.. -.+--.++..+- + ++..+..|.-+.+.|+.+...- .+ .|. .
T Consensus 115 ~P~sP~~~~~lnt~gyaygv~vsG--n---~aYVadlddgfLivdvsdpssP-~l---------agr------------y 167 (370)
T COG5276 115 TPDSPTLIGFLNTDGYAYGVYVSG--N---YAYVADLDDGFLIVDVSDPSSP-QL---------AGR------------Y 167 (370)
T ss_pred CCCCcceeccccCCceEEEEEecC--C---EEEEeeccCcEEEEECCCCCCc-ee---------eee------------e
Confidence 7643332211 123445555554 3 6666665666778888754421 10 011 0
Q ss_pred CCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCC
Q 048801 394 GLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 394 ~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~ 429 (1715)
.........++.| |++..++..|+-+.|-|+...
T Consensus 168 a~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp 201 (370)
T COG5276 168 ALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNP 201 (370)
T ss_pred ccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCC
Confidence 0111122445554 556666778889999999764
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=83.87 E-value=36 Score=42.86 Aligned_cols=142 Identities=10% Similarity=0.056 Sum_probs=85.2
Q ss_pred CCCEEE-EEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCC--------CEEEEEeCCCeeEEEECC-CCCceEEE
Q 048801 254 SGRFVI-TGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNN--------TLVASASNDFVIRVWRLP-DGLPISVL 323 (1715)
Q Consensus 254 DG~~La-TGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg--------~lLASGS~DGtIrVWDl~-tg~~l~~L 323 (1715)
|..+|+ .|+....+.--|++-|+.+..+.-|..- -+.|.|+. +.|+--|.. .|.-.|.+ .|..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~-svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDY-SVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeeccc-ceEEecccccCCceeee
Confidence 444444 4445566777788899999998877765 46777753 344444444 34333433 34333332
Q ss_pred eC----CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcc
Q 048801 324 RG----HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399 (1715)
Q Consensus 324 ~g----H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~ 399 (1715)
.. ......|..-...| +++.++..|-|++||--.-.. .....+-+..
T Consensus 555 esKdY~tKn~Fss~~tTesG----yIa~as~kGDirLyDRig~rA-------------------------KtalP~lG~a 605 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESG----YIAAASRKGDIRLYDRIGKRA-------------------------KTALPGLGDA 605 (776)
T ss_pred eehhccccccccccccccCc----eEEEecCCCceeeehhhcchh-------------------------hhcCcccccc
Confidence 21 11222333333333 899999999999998532111 0111223567
Q ss_pred eeEEEEccCCCeEEEecCCCeEEEEeCCC
Q 048801 400 ILCCAYNANGTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 400 VtslafSpdG~~LatGs~DG~IrVWDl~t 428 (1715)
|..+..+.+|.++++.|. ..+.+-|+.-
T Consensus 606 Ik~idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 606 IKHIDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred eeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence 899999999999887764 6777888753
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=83.63 E-value=62 Score=40.83 Aligned_cols=149 Identities=10% Similarity=0.052 Sum_probs=86.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcE--EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCc--
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFC--LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP-- 319 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~--l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~-- 319 (1715)
+....+..++||.+++.|..-..++-||- |.. ...-......++.+.|.+++.+++++ ..|.+ +|....+..
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~ 314 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEE 314 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccc
Confidence 34556677888888887754433344443 322 11222335578999999999888766 55554 445455542
Q ss_pred ---eEEEeC--CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 320 ---ISVLRG--HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 320 ---l~~L~g--H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
...+.. -...++++.|.+++. ++.++..|.+.... ..|+.-..... ..
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~----~~a~G~~G~v~~s~-D~G~tW~~~~~----------------------~~ 367 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKE----AWAAGGSGILLRST-DGGKSWKRDKG----------------------AD 367 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCc----EEEEECCCcEEEeC-CCCcceeEccc----------------------cC
Confidence 222221 123589999998874 67777788776653 23321111000 00
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCeEEEE
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSDTFARVW 424 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~DG~IrVW 424 (1715)
.-...++.+.|.++++.+++| .+|.|.-|
T Consensus 368 ~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 368 NIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 112347789998888877776 46776554
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=83.24 E-value=19 Score=47.60 Aligned_cols=116 Identities=11% Similarity=0.135 Sum_probs=76.5
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec-CCCCCeEEEEEC--CCCCEEEEEeCCCeeEEEECC
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR-GHEGDITDLAVS--SNNTLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~-gHs~~VtsLafS--pDg~lLASGS~DGtIrVWDl~ 315 (1715)
+..--...+-+.-+.-++..++-+....+.|||...+.+...-. ...+.|.++.|. |+|+.+++.+....|.++.-.
T Consensus 25 ~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 25 FETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred EecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence 33333444455555555555555556689999999887544322 457889999995 588988888899999998531
Q ss_pred -----C----CCceEEE--eCCC-CCeEEEEecCCCCcceEEEEecCCCcEEEEec
Q 048801 316 -----D----GLPISVL--RGHT-GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359 (1715)
Q Consensus 316 -----t----g~~l~~L--~gH~-~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl 359 (1715)
. ..+++.+ ..|+ .+|.+..|.++| .|++|+. ..+.|+|-
T Consensus 105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G----~LvV~sG-Nqlfv~dk 155 (631)
T PF12234_consen 105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG----TLVVGSG-NQLFVFDK 155 (631)
T ss_pred chhhhcCCcccceeEEEEeecCCCCCccceeEecCC----eEEEEeC-CEEEEECC
Confidence 1 1233333 3444 689999999998 4555553 45777763
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=83.10 E-value=34 Score=44.27 Aligned_cols=99 Identities=9% Similarity=-0.127 Sum_probs=50.9
Q ss_pred CCCEEEEEecCC---eEEEEECCCCceEEE--EecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEE--EEEc
Q 048801 556 DNRFVLAAIMDC---RICVWNAVDGSLVHS--LTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIR--IYEI 628 (1715)
Q Consensus 556 DG~~LaTgs~DG---tI~IWDl~sg~~l~t--L~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~--tl~~ 628 (1715)
+|+..+.|+.++ .+..||..+.+-... +.........+++ ++.+.+.|| .+.+||..+++-.. .+..
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~---~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~ 435 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF---GRRLFLVGR---NAEFYCESSNTWTLIDDPIY 435 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE---CCEEEEECC---ceEEecCCCCcEeEcCCCCC
Confidence 677778877653 477888876543221 1111111112222 667777774 57788887664332 2221
Q ss_pred ccceEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCC
Q 048801 629 GRFKLVDGKFSPDGTSIVLSDDV-----GQIYLLNTGQG 662 (1715)
Q Consensus 629 h~~~V~svafSPDG~~LAsgs~D-----G~I~IWdl~tG 662 (1715)
.+... .+..-+|+..++||.+ ..+.+||..++
T Consensus 436 ~r~~~--~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 436 PRDNP--ELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred Ccccc--EEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 11111 1223366777777654 24556665544
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=82.39 E-value=38 Score=45.24 Aligned_cols=114 Identities=16% Similarity=0.196 Sum_probs=74.1
Q ss_pred CCCCeeEEEeCC--CCCEEEEEecCCeEEEEECCC-------C-------------ceEEEEecCCCCeEEEEEc--cCC
Q 048801 544 TPRGVNMIVWSL--DNRFVLAAIMDCRICVWNAVD-------G-------------SLVHSLTGHSASSYVLDVH--PFN 599 (1715)
Q Consensus 544 h~~~VtslafSP--DG~~LaTgs~DGtI~IWDl~s-------g-------------~~l~tL~gH~~~V~sLafS--P~d 599 (1715)
.+..|+.|...- +...|++|..||.|.+|.+.+ . ++...+. -...+++|+++ . .
T Consensus 99 ~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~ 176 (717)
T PF08728_consen 99 FPHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-K 176 (717)
T ss_pred CCceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-c
Confidence 445577766553 556889999999999997632 0 0112222 24468999998 5 5
Q ss_pred CcEEEEEeCCCcEEEEECCCC--ceEEE-EEcccceEEEEEEcCCC-----C-EEEEEeCCCeEEEEEC
Q 048801 600 PRIAMSAGYDGRTIVWDIWEG--TPIRI-YEIGRFKLVDGKFSPDG-----T-SIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 600 g~lLaSgs~DGtI~VWDl~tg--k~l~t-l~~h~~~V~svafSPDG-----~-~LAsgs~DG~I~IWdl 659 (1715)
.++||.++....|.||-+... +.... -..+...|-+|+|-++. . .|++++-.|.+.+|++
T Consensus 177 ~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 177 SRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 678888777777877755431 11110 11134467788887653 2 7888999999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily | Back alignment and domain information |
|---|
Probab=82.37 E-value=0.42 Score=49.22 Aligned_cols=81 Identities=12% Similarity=0.077 Sum_probs=57.6
Q ss_pred HHHHHHhhhHHHhhhhccccchhhhhHHHHHH--hhhccccccCCCCCCHHHHHHHhhhh-------hhhhHHHHHHHHH
Q 048801 1611 ESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEA--AQKLDYLNRFPVPLYPEVIRLRLVNN-------YYRSLEAAKDDIN 1681 (1715)
Q Consensus 1611 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~i~~Rl~n~-------~Yr~~~~~~~d~~ 1681 (1715)
+.+++++..|.++.+ ...+..|..+++. ...++|...+..||||+||+.+|++. ||---+-.-.++.
T Consensus 3 e~~~~~l~~l~~~~~----~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~ 78 (114)
T cd05494 3 EALERVLRELKRHRR----NEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQI 78 (114)
T ss_pred HHHHHHHHHHHHhhh----CCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccc
Confidence 345667777777654 3566667777766 67899999999999999999999986 5543333445666
Q ss_pred HHHhhhhhccCCCh
Q 048801 1682 VMLSNAESYFIKNA 1695 (1715)
Q Consensus 1682 ~~~~Na~~~n~~~~ 1695 (1715)
++.-||.-+++...
T Consensus 79 ~~~~~~~~~~~~~~ 92 (114)
T cd05494 79 DDEGRRSPSNIYAV 92 (114)
T ss_pred ccccccCcccccch
Confidence 67777766666544
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=81.98 E-value=36 Score=43.92 Aligned_cols=117 Identities=9% Similarity=0.098 Sum_probs=71.5
Q ss_pred CCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEeCC-----CCcEEEEecCCC---CC--eEEEEECCCCCEEEEEeCC
Q 048801 241 GHRDAVYCAIFDRSG----RFVITGSDDRLVKIWSME-----TAFCLASCRGHE---GD--ITDLAVSSNNTLVASASND 306 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG----~~LaTGS~DGtIrIWDl~-----tgk~l~tL~gHs---~~--VtsLafSpDg~lLASGS~D 306 (1715)
|.-..|..+.|.|-+ ..|.+......|.||.+. +.+.+..-..+- -+ -..+.|+|....|+.-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 444568899998843 234444566899999874 333333222111 11 1346799999888877666
Q ss_pred CeeEEEECCCC-Cce-EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecC
Q 048801 307 FVIRVWRLPDG-LPI-SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 307 GtIrVWDl~tg-~~l-~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
..-.++++... ..+ .-+ ...+-|.|.+|.+||.. ++++.+..=.-+|||-.
T Consensus 134 dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~R--LVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQR--LVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCE--EEEEeCCeEEEEEecCc
Confidence 55556666533 223 333 45678999999999983 33344444556788754
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=81.86 E-value=24 Score=41.73 Aligned_cols=113 Identities=12% Similarity=0.085 Sum_probs=78.2
Q ss_pred eeEEEeCCCCCEEEEEecCC--eEEEEECCCCceEEEEecC-CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEE
Q 048801 548 VNMIVWSLDNRFVLAAIMDC--RICVWNAVDGSLVHSLTGH-SASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIR 624 (1715)
Q Consensus 548 VtslafSPDG~~LaTgs~DG--tI~IWDl~sg~~l~tL~gH-~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~ 624 (1715)
...+.|..+|.++-+.+.-| .|+.+|+.+|+.+....-. .----.++.. +.++..-.-.++...+||..+.+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence 45678878888888887766 6999999999987665422 1122344443 34555556678999999999999999
Q ss_pred EEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 625 IYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 625 tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
++.- .+.-+.++ .||..|+.++....|+++|..+-+..
T Consensus 125 ~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 125 TFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV 162 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE
T ss_pred EEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceE
Confidence 8873 34455555 77888999999999999998766544
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=81.54 E-value=41 Score=44.97 Aligned_cols=145 Identities=9% Similarity=0.072 Sum_probs=89.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEE------Eec----------------CCCCCeEEEEECC--CCCEEEEEeCCCeeE
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLA------SCR----------------GHEGDITDLAVSS--NNTLVASASNDFVIR 310 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~------tL~----------------gHs~~VtsLafSp--Dg~lLASGS~DGtIr 310 (1715)
+.+|++|. .+.|.||+......+. .+. .....|+.|.+.. +...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56777765 5789999875432211 110 0112355555443 456899999999999
Q ss_pred EEECCC-------C-------------CceEEEeCCCCCeEEEEec--CCCCcceEEEEecCCCcEEEEecCCCCCccee
Q 048801 311 VWRLPD-------G-------------LPISVLRGHTGAVTAIAFS--PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRI 368 (1715)
Q Consensus 311 VWDl~t-------g-------------~~l~~L~gH~~~VtsLafS--Pdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i 368 (1715)
+|.+++ . ++-..+. -...+++|+++ .... +||+++....|.||-+...... .
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r---lIAVSsNs~~VTVFaf~l~~~r--~ 201 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR---LIAVSSNSQEVTVFAFALVDER--F 201 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce---EEEEecCCceEEEEEEeccccc--c
Confidence 997521 0 1122222 34578999998 5444 7888888888888865432100 0
Q ss_pred cCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-----C-eEEEecCCCeEEEEeC
Q 048801 369 YLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-----T-VFVTGSSDTFARVWSA 426 (1715)
Q Consensus 369 ~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-----~-~LatGs~DG~IrVWDl 426 (1715)
.......+.+.|.+|+|.++. . +|++++-.|.+.+|++
T Consensus 202 --------------------~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 202 --------------------YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred --------------------ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 000011256779999997643 2 7778888999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.83 E-value=1.4e+02 Score=37.50 Aligned_cols=137 Identities=12% Similarity=0.082 Sum_probs=80.9
Q ss_pred EEEEECCCCCEEEEEeCCCeeEEEECCC---CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCc
Q 048801 289 TDLAVSSNNTLVASASNDFVIRVWRLPD---GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365 (1715)
Q Consensus 289 tsLafSpDg~lLASGS~DGtIrVWDl~t---g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l 365 (1715)
+.+-|...++.|++. ..|.+.=|-+.. .-++..-....++|.++.|++|++ .|+.--.+.+|.+++....+..
T Consensus 26 ngvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk---ilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK---ILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred cceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc---eEEEEecCceEEEEecCCCchh
Confidence 334444444444443 334455554432 233333344667999999999998 7899999999999987433321
Q ss_pred ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec
Q 048801 366 PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS 445 (1715)
Q Consensus 366 ~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~ 445 (1715)
..... ........|...+|+.+- -+|.-+. ..+-+|..... ...++...
T Consensus 102 l~~~~---------------------~ck~k~~~IlGF~W~~s~-e~A~i~~-~G~e~y~v~pe--------krslRlVk 150 (657)
T KOG2377|consen 102 LEYTQ---------------------ECKTKNANILGFCWTSST-EIAFITD-QGIEFYQVLPE--------KRSLRLVK 150 (657)
T ss_pred hHHHH---------------------HhccCcceeEEEEEecCe-eEEEEec-CCeEEEEEchh--------hhhhhhhh
Confidence 11110 011123448888898763 4444433 33666665432 23355667
Q ss_pred CCCCCeeEEEEccCc
Q 048801 446 GHENDVNYVQFSGCA 460 (1715)
Q Consensus 446 gH~~~V~sLafspdg 460 (1715)
.|...|+...|.++.
T Consensus 151 s~~~nvnWy~yc~et 165 (657)
T KOG2377|consen 151 SHNLNVNWYMYCPET 165 (657)
T ss_pred hcccCccEEEEcccc
Confidence 788889999998875
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=80.63 E-value=37 Score=43.89 Aligned_cols=62 Identities=10% Similarity=0.013 Sum_probs=33.1
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCcEEE--EecCCCCCeEEEEECCCCCEEEEEeCC--CeeEEEECCCC
Q 048801 254 SGRFVITGSDDR-----LVKIWSMETAFCLA--SCRGHEGDITDLAVSSNNTLVASASND--FVIRVWRLPDG 317 (1715)
Q Consensus 254 DG~~LaTGS~DG-----tIrIWDl~tgk~l~--tL~gHs~~VtsLafSpDg~lLASGS~D--GtIrVWDl~tg 317 (1715)
++.++++||.++ .+..||..+..-.. .+.........+ .-+|.+.+.|+.+ .++..||..++
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n 341 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDA 341 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCC
Confidence 355667777543 46678877654322 122111112222 2367777888764 35777886554
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=80.15 E-value=12 Score=47.01 Aligned_cols=92 Identities=14% Similarity=0.198 Sum_probs=66.9
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEE-EEEC-CC--------------
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITD-LAVS-SN-------------- 296 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~Vts-LafS-pD-------------- 296 (1715)
......|......+.+++.+|++++.|+...=|.|.|+|+.++..++.++|-.+.=.. +... ..
T Consensus 297 l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~ 376 (415)
T PF14655_consen 297 LPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSS 376 (415)
T ss_pred cceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCC
Confidence 3455667777888999999999999888877799999999999999888876543211 1111 11
Q ss_pred --CC-EEEEEeCCCeeEEEECCCCCceEEEe
Q 048801 297 --NT-LVASASNDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 297 --g~-lLASGS~DGtIrVWDl~tg~~l~~L~ 324 (1715)
.. +++-+-.-|.|-||.+.+|..+..+.
T Consensus 377 ~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 377 RFALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred cceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 11 23445668999999999988777665
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=80.04 E-value=2.9e+02 Score=39.24 Aligned_cols=28 Identities=11% Similarity=0.017 Sum_probs=20.4
Q ss_pred ccccCCCCCeeEEEeCCCCCEEEEEecC
Q 048801 539 QRLLPTPRGVNMIVWSLDNRFVLAAIMD 566 (1715)
Q Consensus 539 ~~l~~h~~~VtslafSPDG~~LaTgs~D 566 (1715)
....++-..+.++|.+|||..+++-..+
T Consensus 655 ~At~A~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 655 AATQAKLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred hhhccccCCcceEEECCCCcEEEecCCc
Confidence 3445566778999999999988765433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1715 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 6e-16 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 6e-15 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 7e-04 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 6e-15 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 7e-04 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 6e-15 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 7e-04 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 7e-15 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 7e-04 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 8e-15 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 8e-04 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 8e-15 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-07 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 8e-04 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 8e-15 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 8e-04 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 8e-15 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 3e-07 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 9e-04 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 8e-15 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 8e-04 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 8e-15 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 7e-04 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 9e-15 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 8e-04 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 9e-15 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 8e-04 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 9e-15 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 8e-04 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-14 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 8e-04 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-14 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 8e-04 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-14 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 4e-04 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-14 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-04 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 1e-13 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 4e-05 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 4e-12 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 4e-12 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 8e-12 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-11 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 6e-11 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 6e-05 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 8e-11 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 1e-10 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 1e-10 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 1e-10 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 1e-10 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 6e-10 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 7e-10 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 1e-05 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 4e-09 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 8e-09 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 1e-08 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-08 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-08 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 4e-08 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 3e-08 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 5e-08 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 1e-04 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-08 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 1e-04 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 5e-08 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 1e-04 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 6e-08 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 1e-04 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 6e-08 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 2e-04 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 9e-08 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 1e-07 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 2e-07 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 5e-07 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 6e-07 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 7e-07 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 6e-05 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 8e-07 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 8e-05 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 3e-06 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 4e-06 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 5e-06 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 5e-06 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 2e-05 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 7e-04 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 2e-05 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 9e-04 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 1e-04 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 1e-04 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 1e-04 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 2e-04 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-04 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 2e-04 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-04 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 2e-04 | ||
| 4g56_B | 357 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 3e-04 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 4e-04 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 4e-04 | ||
| 3acp_A | 417 | Crystal Structure Of Yeast Rpn14, A Chaperone Of Th | 4e-04 | ||
| 3f3p_A | 351 | Crystal Structure Of The Nucleoporin Pair Nup85-Seh | 4e-04 | ||
| 3vl1_A | 420 | Crystal Structure Of Yeast Rpn14 Length = 420 | 5e-04 | ||
| 3f3f_A | 351 | Crystal Structure Of The Nucleoporin Pair Nup85-Seh | 5e-04 | ||
| 3ewe_A | 349 | Crystal Structure Of The Nup85SEH1 COMPLEX Length = | 5e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 | Back alignment and structure |
|
| >pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21212 Length = 351 | Back alignment and structure |
|
| >pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 | Back alignment and structure |
|
| >pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21 Length = 351 | Back alignment and structure |
|
| >pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX Length = 349 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 206 bits (527), Expect = 5e-54
Identities = 67/444 (15%), Positives = 141/444 (31%), Gaps = 104/444 (23%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDL 291
K + +R H DAVY A F + G+ + + D+ ++++ ET L + HE ++
Sbjct: 604 KNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCC 663
Query: 292 AVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD 351
A SS+++ +A+ S D +++W G + H+ V F+ + + + L + S+D
Sbjct: 664 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL-LATGSND 722
Query: 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANG 409
++WD + + H + C ++ +
Sbjct: 723 FFLKLWDLN-----------------QKECRNT----------MFGHTNSVNHCRFSPDD 755
Query: 410 TVFVTGSSDTFARVWSA----CKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465
+ + S+D R+W + S+ + D E V +S
Sbjct: 756 ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS-------- 807
Query: 466 AMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523
D I+ +++ + I S
Sbjct: 808 --------------------ADGDKIIVAAKNKVLLFDIHTS------------------ 829
Query: 524 PPPPLPPQPPRGGPRQRLLPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL 579
L G + +S + + A+ + +WN
Sbjct: 830 ---------------GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK 874
Query: 580 VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFS 639
V GH + + + P +A D VW+ + + + V F
Sbjct: 875 VADCRGHLSWVHGVMFSPDGSSFL-TASDDQTIRVWETKKVCKNSAIVLKQEIDVV--FQ 931
Query: 640 PDGTSIVLSDDVGQIYLLNTGQGE 663
+ T ++ D++ + L+ G+
Sbjct: 932 ENETMVLAVDNIRGLQLIAGKTGQ 955
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 194 bits (494), Expect = 5e-50
Identities = 71/385 (18%), Positives = 120/385 (31%), Gaps = 96/385 (24%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
V C +V G +D +KI + +S GH+ + + +++
Sbjct: 957 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK 1016
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
+ S+S D VI+VW G + L+ H V +LLS S DGT ++W+
Sbjct: 1017 TLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS----RLLSWSFDGTVKVWN 1071
Query: 359 ARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGTVFVTGS 416
TG+ HQ +L CA +++ T F + S
Sbjct: 1072 VI-----------------TGRIERD----------FTCHQGTVLSCAISSDATKFSSTS 1104
Query: 417 SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476
+D A++WS D P+HEL GH V FS
Sbjct: 1105 ADKTAKIWSF------DLLSPLHEL---KGHNGCVRCSAFS------------------- 1136
Query: 477 PKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534
D + T +G IW + L P +
Sbjct: 1137 ---------LDGILLATGDDNGEIRIWNVSDGQL------------LHSCAPISVEEGTA 1175
Query: 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLD 594
V + +S D++ +++A + WN G + + + +
Sbjct: 1176 T--------HGGWVTDVCFSPDSKTLVSA--GGYLKWWNVATGDSSQTFYTNGTNLKKIH 1225
Query: 595 VHPFNPRIAMSAGYDGRTIVWDIWE 619
V P + G + + E
Sbjct: 1226 VSPDFRTYV-TVDNLGILYILQVLE 1249
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 4e-49
Identities = 57/416 (13%), Positives = 115/416 (27%), Gaps = 110/416 (26%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
+ GH + F + V++W++++ +A CRGH + + S
Sbjct: 833 AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP 892
Query: 296 NNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355
+ + +AS+D IRVW + F + +L+ + +
Sbjct: 893 DGSSFLTASDDQTIRVWETKKVCKN--SAIVLKQEIDVVFQENET---MVLAVDNIRGLQ 947
Query: 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGTVFV 413
+ + TG+ + + CC + +
Sbjct: 948 LIAGK-----------------TGQI-------------DYLPEAQVSCCCLSPHLEYVA 977
Query: 414 TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473
G D ++ + + GH+ V ++QF+
Sbjct: 978 FGDEDGAIKIIEL------PNNRVFS---SGVGHKKAVRHIQFT---------------- 1012
Query: 474 ENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531
D +++ S D +W ++ H
Sbjct: 1013 ------------ADGKTLISSSEDSVIQVWNWQTGDYVFLQA------H----------- 1043
Query: 532 PPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSY 591
V D+R +L+ D + VWN + G + T H +
Sbjct: 1044 -------------QETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVL 1089
Query: 592 VLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDG-KFSPDGTSIV 646
+ + + S D +W +P+ + G V FS DG +
Sbjct: 1090 SCAISSDATKFS-STSADKTAKIWSFDLLSPLHELK-GHNGCVRCSAFSLDGILLA 1143
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 3e-47
Identities = 63/447 (14%), Positives = 129/447 (28%), Gaps = 121/447 (27%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDIT 289
+ + RGH V+ +F G +T SDD+ +++W + +
Sbjct: 869 IDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNS--AIVLKQEI 926
Query: 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS 349
D+ N T+V + N +++ G + V+ SP +
Sbjct: 927 DVVFQENETMVLAVDNIRGLQLI---AGKTGQIDYLPEAQVSCCCLSPHLE---YVAFGD 980
Query: 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNA 407
+DG +I + + H+ + + A
Sbjct: 981 EDGAIKIIELP-----------------NNRVFSS----------GVGHKKAVRHIQFTA 1013
Query: 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAM 467
+G ++ S D+ +VW+ + + L H+ V +
Sbjct: 1014 DGKTLISSSEDSVIQVWNW------QTGDYV----FLQAHQETVKDFRLL---------- 1053
Query: 468 SDAFKEENVPKFKNSWFCHDN-IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPP 526
D+ +++ S DG+ +W +
Sbjct: 1054 ------------------QDSRLLSWSFDGTVKVWNVIT--------------------- 1074
Query: 527 PLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH 586
G + V S D + D +W+ S +H L GH
Sbjct: 1075 --------GRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH 1126
Query: 587 SASSYVLDVHPFNP---RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLV--------- 634
+ V F+ +A + +G +W++ +G + +
Sbjct: 1127 --NGCVRCSA-FSLDGILLA-TGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVT 1182
Query: 635 DGKFSPDGTSIVLSDDVGQIYLLNTGQ 661
D FSPD ++V + + + + TG
Sbjct: 1183 DVCFSPDSKTLVSAGGYLKWWNVATGD 1209
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 184 bits (468), Expect = 7e-47
Identities = 70/470 (14%), Positives = 132/470 (28%), Gaps = 117/470 (24%)
Query: 234 QNIKKLRGHRDAVYCAIF--DRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDL 291
+ + H + V C F + + TGS+D +K+W + C + GH +
Sbjct: 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749
Query: 292 AVSSNNTLVASASNDFVIRVWRLPDGLPISVL-------------RGHTGAVTAIAFSP- 337
S ++ L+AS S D +R+W + + V ++S
Sbjct: 750 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD 809
Query: 338 -RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396
+++ ++ + ++D S I
Sbjct: 810 GD-----KIIVAAKNKV-LLFDIHTSGLLAEI--------------------------HT 837
Query: 397 SHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV 454
H I C ++ + V S +W+ DS + GH + V+ V
Sbjct: 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNI------DSRLKVA---DCRGHLSWVHGV 888
Query: 455 QFS--GCAVASRSAMS-----DAFKEENVPKFKNSW-----FCHDN--IVTCSRDGSAII 500
FS G + + S + K F + ++ +
Sbjct: 889 MFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQL 948
Query: 501 WIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFV 560
GK G Q V+ S +V
Sbjct: 949 I-------AGKTG-------------------------QIDYLPEAQVSCCCLSPHLEYV 976
Query: 561 LAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTIVWDI 617
D I + + + S GH + V + F + S+ D VW+
Sbjct: 977 AFGDEDGAIKIIELPNNRVFSSGVGHKKA--VRHIQ-FTADGKTLI-SSSEDSVIQVWNW 1032
Query: 618 WEGTPIRIYEIGRFKLVDG-KFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666
G + + + V + D + S D G + + N G ++
Sbjct: 1033 QTGDYVFLQ--AHQETVKDFRLLQDSRLLSWSFD-GTVKVWNVITGRIER 1079
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 9e-47
Identities = 66/431 (15%), Positives = 118/431 (27%), Gaps = 114/431 (26%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
V C + G +I + ++++ + GH I S +
Sbjct: 794 PEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH 853
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
L A + + + +W + L ++ RGH V + FSP S L++SDD T R+W+
Sbjct: 854 LAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGS---SFLTASDDQTIRVWE 910
Query: 359 ARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD 418
+ N + Q + + N T+ + +
Sbjct: 911 TK-----------------KVCKNSA----------IVLKQEIDVVFQENETMVLAVDNI 943
Query: 419 TFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478
++ + + E V+ S
Sbjct: 944 RGLQLIAG------------KTGQIDYLPEAQVSCCCLS--------------------- 970
Query: 479 FKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536
+ DG+ I + P
Sbjct: 971 -------PHLEYVAFGDEDGAIKII-----------------------------ELPNNR 994
Query: 537 PRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVH 596
+ + V I ++ D + ++++ D I VWN G V L H V D
Sbjct: 995 VFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAH--QETVKDFR 1051
Query: 597 PFNP--RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDG-KFSPDGTSIVL-SDDVG 652
R+ S +DG VW++ G R + V S D T S D
Sbjct: 1052 -LLQDSRLL-SWSFDGTVKVWNVITGRIERDFT-CHQGTVLSCAISSDATKFSSTSAD-K 1107
Query: 653 QIYL--LNTGQ 661
+ +
Sbjct: 1108 TAKIWSFDLLS 1118
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 159 bits (403), Expect = 3e-39
Identities = 55/282 (19%), Positives = 99/282 (35%), Gaps = 48/282 (17%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
GH+ AV F G+ +I+ S+D ++++W+ +T + + H+ + D +
Sbjct: 996 FSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQ 1054
Query: 296 NNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355
++ L+ S S D ++VW + G H G V + A S + + S+S D T +
Sbjct: 1055 DSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT---KFSSTSADKTAK 1110
Query: 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGTVFV 413
IW L+ H + C A++ +G +
Sbjct: 1111 IWSFD-----------------LLSPLHE----------LKGHNGCVRCSAFSLDGILLA 1143
Query: 414 TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVASRSAMS--- 468
TG + R+W+ + S PI + + H V V FS + S
Sbjct: 1144 TGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWW 1203
Query: 469 DAFKEENVPKFK--NSW-----FCHDN--IVTCSRDGSAIIW 501
+ ++ F + D VT G I
Sbjct: 1204 NVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYIL 1245
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 2e-33
Identities = 78/469 (16%), Positives = 151/469 (32%), Gaps = 93/469 (19%)
Query: 223 IAKPSTMVQKMQNIKKLRGHRDAVYCAIFDR----SGRFVITGSDDRLVKIWSMETAFCL 278
+ P+ ++ + + + +D C F +G + +V++ E
Sbjct: 516 LVGPAHLIHEFVAYRHILDEKDCAVCENFQEFLSLNGHLLGRQPFPNIVQLGLCEP---E 572
Query: 279 ASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPR 338
S + + L N I+ V+R HT AV FS
Sbjct: 573 TSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSR------LVVRPHTDAVYHACFSQD 626
Query: 339 PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH 398
++ S D T +++ A TG+ + +++H
Sbjct: 627 GQ---RIASCGADKTLQVFKAE-----------------TGEKLLD----------IKAH 656
Query: 399 Q--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF 456
+ +LCCA++++ + T S+D ++W + + + +H H VN F
Sbjct: 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDS------ATGKLVH---TYDEHSEQVNCCHF 707
Query: 457 S----GCAVASRSAMS-----DAFKEENVPKFK--NSW-----FCHDN--IVTCSRDGSA 498
+ +A+ S D ++E + F D+ + +CS DG+
Sbjct: 708 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767
Query: 499 IIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558
+W RS + + V WS D
Sbjct: 768 RLWDVRSAN----------------ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD 811
Query: 559 FVLAAIMDCRICVWNAVDG-SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617
++ A ++ +++ L TGH ++ D P++ A +W+I
Sbjct: 812 KIIVA-AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAV-IALSQYCVELWNI 869
Query: 618 WEGTPIRIYEIGRFKLVDG-KFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665
+ G V G FSPDG+S + + D I + T +
Sbjct: 870 DSRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 917
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 3e-30
Identities = 37/202 (18%), Positives = 67/202 (33%), Gaps = 43/202 (21%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
+ + H+ V + S D+ KIWS + L +GH G + A
Sbjct: 1076 RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF 1135
Query: 294 SSNNTLVASASNDFVIRVWRLPDGLPISV---------LRGHTGAVTAIAFSPRPSAIYQ 344
S + L+A+ ++ IR+W + DG + H G VT + FSP
Sbjct: 1136 SLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSK---T 1192
Query: 345 LLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILC 402
L+S+ G + W+ TG S+ ++ +
Sbjct: 1193 LVSAG--GYLKWWNVA-----------------TGDSSQT----------FYTNGTNLKK 1223
Query: 403 CAYNANGTVFVTGSSDTFARVW 424
+ + +VT + +
Sbjct: 1224 IHVSPDFRTYVTVDNLGILYIL 1245
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 1e-14
Identities = 9/80 (11%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
+ H V F + +++ +K W++ T + + ++ + VS +
Sbjct: 1172 EGTATHGGWVTDVCFSPDSKTLVSAGGY--LKWWNVATGDSSQTFYTNGTNLKKIHVSPD 1229
Query: 297 NTLVASASNDFVIRVWRLPD 316
+ N ++ + ++ +
Sbjct: 1230 FRTYVTVDNLGILYILQVLE 1249
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 5e-14
Identities = 44/300 (14%), Positives = 84/300 (28%), Gaps = 83/300 (27%)
Query: 389 PSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE 448
P +S + ++ G +++ + + S V+ H
Sbjct: 571 PETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRL---------------VVRPHT 615
Query: 449 NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSR 506
+ V + FS D I +C D + ++
Sbjct: 616 DAVYHACFS----------------------------QDGQRIASCGADKTLQVF----- 642
Query: 507 RSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD 566
+ G + V +S D+ ++ D
Sbjct: 643 ------------------------KAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSAD 678
Query: 567 CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP----RIAMSAGYDGRTIVWDIWEGTP 622
++ +W++ G LVH+ HS V H F + + D +WD+ +
Sbjct: 679 KKVKIWDSATGKLVHTYDEHS--EQVNCCH-FTNKSNHLLLATGSNDFFLKLWDLNQKEC 735
Query: 623 IRIYEIGRFKLVDG-KFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKYDQFFLGDYRPL 681
G V+ +FSPD + G + L + +K +FFL P
Sbjct: 736 RNTMF-GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPP 794
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 7e-13
Identities = 25/185 (13%), Positives = 54/185 (29%), Gaps = 9/185 (4%)
Query: 489 IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG- 547
+ + + S +A + + R
Sbjct: 555 LGRQPFPNIVQLGLCEPETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPH 614
Query: 548 ---VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAM 604
V +S D + + + D + V+ A G + + H + IA
Sbjct: 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA- 673
Query: 605 SAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVL---SDDVGQIYLLNTGQ 661
+ D + +WD G + Y+ ++ F+ ++L S+D + L + Q
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSND-FFLKLWDLNQ 732
Query: 662 GESQK 666
E +
Sbjct: 733 KECRN 737
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 3e-52
Identities = 72/393 (18%), Positives = 136/393 (34%), Gaps = 95/393 (24%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
L GHR V IF +++ S+D +K+W ET + +GH + D++
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 296 NNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355
+ L+AS S D I++W I + GH V++++ P ++S+S D T +
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD---HIVSASRDKTIK 217
Query: 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGTVFV 413
+W+ + TG H+ + N +GT+
Sbjct: 218 MWEVQ-----------------TGYCVKT----------FTGHREWVRMVRPNQDGTLIA 250
Query: 414 TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVASRSAMSDAF 471
+ S+D RVW +++ E L H + V + ++ + A
Sbjct: 251 SCSNDQTVRVWVV------ATKECKAE---LREHRHVVECISWAPESSYSSISEATGS-- 299
Query: 472 KEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLP 529
+ +++ SRD + +W +
Sbjct: 300 --------ETKKSGKPGPFLLSGSRDKTIKMWDVSTG----------------------- 328
Query: 530 PQPPRGGPRQRLLPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG 585
L T G V +++ +F+L+ D + VW+ + + +L
Sbjct: 329 ----------MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 378
Query: 586 HSASSYVLDVHPFNPRIAMSAGYDGRTI-VWDI 617
H LD H P + + D +T+ VW+
Sbjct: 379 HEHFVTSLDFHKTAPYVV-TGSVD-QTVKVWEC 409
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 6e-41
Identities = 54/254 (21%), Positives = 98/254 (38%), Gaps = 57/254 (22%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
+ I+ + GH V +G +++ S D+ +K+W ++T +C+ + GH + +
Sbjct: 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 242
Query: 294 SSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIY---------- 343
+ + TL+AS SND +RVW + + LR H V I+++P S
Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 302
Query: 344 -------QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396
LLS S D T ++WD TG + L
Sbjct: 303 KSGKPGPFLLSGSRDKTIKMWDVS-----------------TGMCLMT----------LV 335
Query: 397 SHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV 454
H + +++ G ++ + D RVW +++ + L+ HE+ V +
Sbjct: 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDY------KNKRCMK---TLNAHEHFVTSL 386
Query: 455 QFS--GCAVASRSA 466
F V + S
Sbjct: 387 DFHKTAPYVVTGSV 400
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 3e-39
Identities = 71/403 (17%), Positives = 119/403 (29%), Gaps = 106/403 (26%)
Query: 260 TGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP 319
R K W + GH +T + +++ SAS D I+VW G
Sbjct: 84 PLGQKRDPKEWIPRPP-EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF 142
Query: 320 ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITG 379
L+GHT +V I+F L S S D T ++WD +
Sbjct: 143 ERTLKGHTDSVQDISFDHSGK---LLASCSADMTIKLWDFQ-----------------GF 182
Query: 380 KSNVPSNNGPSSSNGLQ--SHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQP 437
+ + H + + NG V+ S D ++W +
Sbjct: 183 ECIRT----------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV------QTGYC 226
Query: 438 IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRD 495
+ +GH V V+ + D I +CS D
Sbjct: 227 VK---TFTGHREWVRMVRPN----------------------------QDGTLIASCSND 255
Query: 496 GSAIIWIPRSRRS------H-GKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548
+ +W+ ++ H V ++ P + G
Sbjct: 256 QTVRVWVVATKECKAELREHRHVV--ECISWA------------PES--SYSSISEATGS 299
Query: 549 NMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP---RIAMS 605
F+L+ D I +W+ G + +L GH ++V V F+ I S
Sbjct: 300 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH--DNWVRGVL-FHSGGKFIL-S 355
Query: 606 AGYDGRTI-VWDIWEGTPIRIYEIGRFKLVDG-KFSPDGTSIV 646
D +T+ VWD ++ V F +V
Sbjct: 356 CADD-KTLRVWDYKNKRCMKTLN-AHEHFVTSLDFHKTAPYVV 396
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 3e-38
Identities = 60/293 (20%), Positives = 108/293 (36%), Gaps = 51/293 (17%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
+ L+GH D+V FD SG+ + + S D +K+W + C+ + GH+ +++ +++
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI 200
Query: 294 SSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP--RPSAIYQLLSSSDD 351
N + SAS D I++W + G + GH V + + + S S+D
Sbjct: 201 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT-----LIASCSND 255
Query: 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNV-------PSNNGPSSSNGLQSHQILCCA 404
T R+W + K + +V P ++ S S S
Sbjct: 256 QTVRVWVVATKE-------CKAE--LREHRHVVECISWAPESSYSSISEATGSETK---K 303
Query: 405 YNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVA 462
G ++GS D ++W + + L GH+N V V F G +
Sbjct: 304 SGKPGPFLLSGSRDKTIKMWDV------STGMCLM---TLVGHDNWVRGVLFHSGGKFIL 354
Query: 463 SRSAMS-----DAFKEENVPKFK--NSW-----FCHDN--IVTCSRDGSAIIW 501
S + D + + + F +VT S D + +W
Sbjct: 355 SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 1e-30
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 23/151 (15%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIF--------------------DRSGRFVITGSDDRLVKI 269
V + +LR HR V C + + G F+++GS D+ +K+
Sbjct: 263 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322
Query: 270 WSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGA 329
W + T CL + GH+ + + S + S ++D +RVW + + L H
Sbjct: 323 WDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF 382
Query: 330 VTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360
VT++ F +++ S D T ++W+ R
Sbjct: 383 VTSLDFHKTAP---YVVTGSVDQTVKVWECR 410
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 2e-29
Identities = 70/459 (15%), Positives = 130/459 (28%), Gaps = 142/459 (30%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDR-----LVKIWSMETAFCLASCRGHEGDITDLAV 293
LR + ++F + + D+ L K W+ E +
Sbjct: 19 LRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRL-QKKVMELESKLN--EA 75
Query: 294 SSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT 353
T + W +P L GH VT + F P S ++S+S+D T
Sbjct: 76 KEEFTSGGPLGQKRDPKEW-IPRPPEKYALSGHRSPVTRVIFHPVFS---VMVSASEDAT 131
Query: 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGTV 411
++WD TG L+ H + +++ +G +
Sbjct: 132 IKVWDYE-----------------TGDFERT----------LKGHTDSVQDISFDHSGKL 164
Query: 412 FVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471
+ S+D ++W + I + GH+++V+ V +
Sbjct: 165 LASCSADMTIKLWDF------QGFECIR---TMHGHDHNVSSVSIM----------PN-- 203
Query: 472 KEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531
D+IV+ SRD + +W ++
Sbjct: 204 --------------GDHIVSASRDKTIKMWEVQTG------------------------- 224
Query: 532 PPRGGPRQRLLPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH- 586
+ T G V M+ + D + + D + VW L H
Sbjct: 225 --------YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 276
Query: 587 ----------------SASSYVLDVHPFNP---RIAMSAGYDGRTI-VWDIWEGTPIRIY 626
+ + + + S D +TI +WD+ G +
Sbjct: 277 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLL-SGSRD-KTIKMWDVSTGMCLMTL 334
Query: 627 EIGRFKLVDG-KFSPDGTSIVL-SDDVGQIYL--LNTGQ 661
G V G F G I+ +DD + + +
Sbjct: 335 V-GHDNWVRGVLFHSGGKFILSCADD-KTLRVWDYKNKR 371
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 5e-17
Identities = 47/343 (13%), Positives = 88/343 (25%), Gaps = 117/343 (34%)
Query: 334 AFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393
+ + W R +
Sbjct: 71 KLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYA--------------------------- 103
Query: 394 GLQSHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDV 451
L H+ + ++ +V V+ S D +VW ++ L GH + V
Sbjct: 104 -LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY------ETGDFER---TLKGHTDSV 153
Query: 452 NYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSH 509
+ F H + +CS D + +W +
Sbjct: 154 QDISFD----------------------------HSGKLLASCSADMTIKLWDFQGFE-- 183
Query: 510 GKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG----VNMIVWSLDNRFVLAAIM 565
+ T G V+ + + +++A
Sbjct: 184 -------------------------------CIRTMHGHDHNVSSVSIMPNGDHIVSASR 212
Query: 566 DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTI-VWDIWEGT 621
D I +W G V + TGH +V V N IA S D +T+ VW +
Sbjct: 213 DKTIKMWEVQTGYCVKTFTGHR--EWVRMVR-PNQDGTLIA-SCSND-QTVRVWVVATKE 267
Query: 622 PIRIYEIGRFKLVDG-KFSPDGTSIVLSDDVGQIYLLNTGQGE 663
+V+ ++P+ + +S+ G + G
Sbjct: 268 CKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGP 309
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 5e-51
Identities = 69/394 (17%), Positives = 124/394 (31%), Gaps = 106/394 (26%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDL 291
+M+ + LRGH +Y + R +++ S D + IW T + + +
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 292 AVSSNNTLVASASNDFVIRVWRLPDG----LPISVLRGHTGAVTAIAFSPRPSAIYQLLS 347
A + + VA D + ++ L L GHTG ++ F Q+++
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN----QIVT 159
Query: 348 SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAY 405
SS D TC +WD TG+ H ++ +
Sbjct: 160 SSGDTTCALWDIE-----------------TGQQTTT----------FTGHTGDVMSLSL 192
Query: 406 NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVAS 463
+ +FV+G+ D A++W +GHE+D+N + F G A A+
Sbjct: 193 APDTRLFVSGACDASAKLWDV------REGMCRQ---TFTGHESDINAICFFPNGNAFAT 243
Query: 464 RSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523
S D + ++ R+ +
Sbjct: 244 ----------------------------GSDDATCRLFDLRADQELMT------------ 263
Query: 524 PPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL 583
G+ + +S R +LA D VW+A+ L
Sbjct: 264 ----YSHDNIIC-----------GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308
Query: 584 TGHSASSYVLDVHPFNPRIAMSAGYDGRTI-VWD 616
GH L V +A + +D + +W+
Sbjct: 309 AGHDNRVSCLGVTDDGMAVA-TGSWDS-FLKIWN 340
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 1e-40
Identities = 55/240 (22%), Positives = 99/240 (41%), Gaps = 42/240 (17%)
Query: 231 QKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITD 290
++ ++L GH + C F + ++T S D +W +ET + GH GD+
Sbjct: 131 GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189
Query: 291 LAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP--RPSAIYQLLSS 348
L+++ + L S + D ++W + +G+ GH + AI F P +
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-----AFATG 244
Query: 349 SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN 408
SDD TCR++D R + + + + + G I +++ +
Sbjct: 245 SDDATCRLFDLR-----------------ADQE-LMTYSHDNIICG-----ITSVSFSKS 281
Query: 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVASRSA 466
G + + G D VW A K+ VL+GH+N V+ + + G AVA+ S
Sbjct: 282 GRLLLAGYDDFNCNVWDALKA---------DRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 3e-30
Identities = 66/389 (16%), Positives = 111/389 (28%), Gaps = 124/389 (31%)
Query: 278 LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP 337
+ D + + + + I LRGH + A+ +
Sbjct: 11 AEQLKNQIRDARKACADATLSQITNN-----IDPVGRIQMRTRRTLRGHLAKIYAMHWGT 65
Query: 338 --RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL 395
R LLS+S DG IWD+ T V + SS
Sbjct: 66 DSR-----LLLSASQDGKLIIWDSY-----------------TTNK-VHAIPLRSSW--- 99
Query: 396 QSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455
++ CAY +G G D +++ ++ E + L+GH ++ +
Sbjct: 100 ----VMTCAYAPSGNYVACGGLDNICSIYN-----LKTREGNVRVSRELAGHTGYLSCCR 150
Query: 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN-IVTCSRDGSAIIWIPRSRRSHGKVGR 514
F DN IVT S D + +W +
Sbjct: 151 FL----------------------------DDNQIVTSSGDTTCALWDIETG-------- 174
Query: 515 WTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG----VNMIVWSLDNRFVLAAIMDCRIC 570
+ T G V + + D R ++ D
Sbjct: 175 -------------------------QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 571 VWNAVDGSLVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTI-VWDIWEGTPIRIY 626
+W+ +G + TGH S + + F P A + D T ++D+ + Y
Sbjct: 210 LWDVREGMCRQTFTGH--ESDINAIC-FFPNGNAFA-TGSDDA-TCRLFDLRADQELMTY 264
Query: 627 E----IGRFKLVDGKFSPDGTSIVL-SDD 650
I V FS G ++ DD
Sbjct: 265 SHDNIICGITSVS--FSKSGRLLLAGYDD 291
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 1e-08
Identities = 32/239 (13%), Positives = 64/239 (26%), Gaps = 62/239 (25%)
Query: 431 VEDSEQPIHELDVLSGHENDVNYVQFS--GCAVASRSAMSDAFKEENVPKFK--NSW--- 483
+ + +Q E + L D + + + + +
Sbjct: 1 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 484 --FCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQ 539
+ D+ +++ S+DG IIW +
Sbjct: 61 MHWGTDSRLLLSASQDGKLIIWDSYTT--------------------------------- 87
Query: 540 RLLPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGS----LVHSLTGHSASSY 591
+ V ++ +V +D ++N + L GH + Y
Sbjct: 88 NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGH--TGY 145
Query: 592 VLDVHPFNP--RIAMSAGYDGRTI-VWDIWEGTPIRIYEIGRFKLVDG-KFSPDGTSIV 646
+ F +I ++ D T +WDI G + G V +PD V
Sbjct: 146 LSCCR-FLDDNQIV-TSSGD-TTCALWDIETGQQTTTFT-GHTGDVMSLSLAPDTRLFV 200
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 8e-07
Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 16/126 (12%)
Query: 546 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP---RI 602
R + I + +L GH A + +H + +
Sbjct: 19 RDARKACADATLS-----QITNNIDPVGRIQMRTRRTLRGHLAK--IYAMH-WGTDSRLL 70
Query: 603 AMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDG-KFSPDGTSIV--LSDDVGQIYLLNT 659
SA DG+ I+WD + + R V ++P G + D++ IY L T
Sbjct: 71 L-SASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 660 GQGESQ 665
+G +
Sbjct: 129 REGNVR 134
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 6e-05
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIW 270
K L GH + V C G V TGS D +KIW
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 2e-49
Identities = 66/443 (14%), Positives = 124/443 (27%), Gaps = 108/443 (24%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCL--ASCRGHEGDITDLAVS 294
+ H A SG + +G V+IW + + G + D++
Sbjct: 53 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWD 112
Query: 295 SNNTLVASAS--NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP-RPSAIYQLLSSSDD 351
S + +A+ + V+ G L G A+ ++ F P RP ++++S SDD
Sbjct: 113 SESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRP---FRIISGSDD 169
Query: 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANG 409
T I++ K H + YN +G
Sbjct: 170 NTVAIFEGP-----------------PFKFKST----------FGEHTKFVHSVRYNPDG 202
Query: 410 TVFVTGSSDTFARVWSACKSSVEDSEQPIHEL----DVLSGHENDVNYVQFSGCAVASRS 465
++F + D +++ H V + +S
Sbjct: 203 SLFASTGGDGTIVLYNG------VDGTKTGVFEDDSLKNVAHSGSVFGLTWS-------- 248
Query: 466 AMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523
D I + S D + IW + +
Sbjct: 249 --------------------PDGTKIASASADKTIKIWNVATLK---------------- 272
Query: 524 PPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL 583
+ G R + + +++ + I N GS+
Sbjct: 273 -----VEKTIPVGTR-------IEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVR 320
Query: 584 TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDG-KFSPDG 642
GH+ + L + SA +G WDI G R++ ++ G K + G
Sbjct: 321 YGHNKAITALSSSADGKTLF-SADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 379
Query: 643 TSIVLSDDVGQIYLLNTGQGESQ 665
+S D + ++ G
Sbjct: 380 DLFTVSWD-DHLKVVPAGGSGVD 401
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 2e-47
Identities = 47/437 (10%), Positives = 111/437 (25%), Gaps = 106/437 (24%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSD--DRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
+ V +D + + + +R ++ +T + G + + +
Sbjct: 99 IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPS 158
Query: 297 NTL-VASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP--RPSAIYQLLSSSDDGT 353
+ S S+D + ++ P S HT V ++ ++P S+ DGT
Sbjct: 159 RPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS-----LFASTGGDGT 213
Query: 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFV 413
+++ G + + S + ++ +GT
Sbjct: 214 IVLYNGV-----------------DGTKTGVFEDDSLKNVA-HSGSVFGLTWSPDGTKIA 255
Query: 414 TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473
+ S+D ++W+ + + + G + +
Sbjct: 256 SASADKTIKIWNV------ATLKVEKTI--PVGTRIEDQQLGII---------------- 291
Query: 474 ENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531
+V+ S +G P Q
Sbjct: 292 ------------WTKQALVSISANGFINFVNPELGS---------------------IDQ 318
Query: 532 PPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT-GHSASS 590
G + + + S D + + +A + I W+ G H+
Sbjct: 319 VRYGHNK--------AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMI 370
Query: 591 YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGK-----FSPDGTSI 645
+ + + +D V + + S DG
Sbjct: 371 TGIKTTS-KGDLF-TVSWDDHLKVVPAGGSGVDS--SKAVANKLSSQPLGLAVSADGDIA 426
Query: 646 VLSDDVGQIYLLNTGQG 662
V + I + + G+
Sbjct: 427 VAACY-KHIAIYSHGKL 442
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 7e-45
Identities = 70/456 (15%), Positives = 132/456 (28%), Gaps = 93/456 (20%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVI-TGSDDRLVKIWSMETAFCLASCRGHEGDITDLA 292
+ L G A+ F S F I +GSDD V I+ ++ H + +
Sbjct: 138 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR 197
Query: 293 VSSNNTLVASASNDFVIRVWRLPDGLPISVL-------RGHTGAVTAIAFSP--RPSAIY 343
+ + +L AS D I ++ DG V H+G+V + +SP
Sbjct: 198 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT----- 252
Query: 344 QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCC 403
++ S+S D T +IW+ T K G +
Sbjct: 253 KIASASADKTIKIWNVA-----------------TLKVEKTIPVG-------TRIEDQQL 288
Query: 404 AYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAV 461
V+ S++ F + + V GH + + S G +
Sbjct: 289 GIIWTKQALVSISANGFINFVNP------ELGSIDQ---VRYGHNKAITALSSSADGKTL 339
Query: 462 AS----RSAMS-DAFKEENVPKFKNSWFCHDNIVTC---SRDGSAIIWIPRSRRSHGKVG 513
S S D + F + H ++T + G + +
Sbjct: 340 FSADAEGHINSWDISTGISNRVFPDV---HATMITGIKTTSKGDLF-----TVSWDDHLK 391
Query: 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL----DNRFVLAAIMDCRI 569
G ++ L D +AA I
Sbjct: 392 VVPAG----------------GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK-HI 434
Query: 570 CVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG 629
+++ G L +++S + + +A G D + V+ + + + I
Sbjct: 435 AIYS--HGKLTEVPISYNSSC--VALSNDKQFVA-VGGQDSKVHVYKLSGASVSEVKTIV 489
Query: 630 RFKLVDG-KFSPDGTSIVLSDDVGQIYLLNTGQGES 664
+ FS +G +V +D ++ +
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE 525
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 4e-44
Identities = 66/434 (15%), Positives = 121/434 (27%), Gaps = 104/434 (23%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR-GHEGDITDLAVSS 295
K H +V+ + G + + S D+ +KIW++ T + G + L +
Sbjct: 233 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 292
Query: 296 NNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355
+ S S + I G V GH A+TA++ S L S+ +G
Sbjct: 293 TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK---TLFSADAEGHIN 349
Query: 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG 415
WD TG SN + ++ I + G +F
Sbjct: 350 SWDIS-----------------TGISNRVFPDVHAT-------MITGIKTTSKGDLFTVS 385
Query: 416 SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475
D +V A V + + + S +D
Sbjct: 386 WDDH-LKVVPA------GGSGVDSSKAVANKLSSQPLGLAVS----------AD------ 422
Query: 476 VPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRG 535
+I + I+ SHGK+ +Y+
Sbjct: 423 -----------GDIAVAACYKHIAIY------SHGKLTEVPISYN--------------- 450
Query: 536 GPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHS-LTGHSASSYVLD 594
+ + S D +FV D ++ V+ S+ H A +
Sbjct: 451 ------------SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 498
Query: 595 VHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRF---KLVDGKFSPDGTSIVL-SDD 650
+ + + I + + + F K+ +SPD + S D
Sbjct: 499 FSNNGAFLV-ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD 557
Query: 651 VGQIYL--LNTGQG 662
+ + +N
Sbjct: 558 -NSVIVWNMNKPSD 570
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 7e-43
Identities = 59/420 (14%), Positives = 122/420 (29%), Gaps = 113/420 (26%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
G R + + +++ S + + + E GH IT L+ S++
Sbjct: 278 PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK 337
Query: 299 LVASASNDFVIRVWRLPDGLPISVL-RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357
+ SA + I W + G+ V H +T I + + L + S D ++
Sbjct: 338 TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG----DLFTVSWDDHLKVV 393
Query: 358 DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS 417
A S + +N L S Q L A +A+G + V
Sbjct: 394 PAGGSGVDS---------------------SKAVANKLSS-QPLGLAVSADGDIAVAACY 431
Query: 418 DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477
++ + + + V S
Sbjct: 432 KH-IAIY--------SHGKLTEVPI---SYN--SSCVALS-------------------- 457
Query: 478 KFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRG 535
+D + +D ++
Sbjct: 458 --------NDKQFVAVGGQDSKVHVYKLSG-----------------------------A 480
Query: 536 GPRQRLLPTPRG-VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLV---HSLTGHSASSY 591
+ + + +S + F++A ++ ++ + + +S T H+A
Sbjct: 481 SVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK-- 538
Query: 592 VLDVHPFNP---RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKL--VDGKFSPDGTSIV 646
V V ++P R+A + D IVW++ + + I G + V+ + T+IV
Sbjct: 539 VACVS-WSPDNVRLA-TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIV 596
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 163 bits (416), Expect = 5e-42
Identities = 51/392 (13%), Positives = 98/392 (25%), Gaps = 105/392 (26%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLA-SCRGHEGDITDLA 292
+ GH A+ G+ + + + + W + T H IT +
Sbjct: 315 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 374
Query: 293 VSSNNTLVASASNDFVIRVWRLPDGLP--ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD 350
+S L + +D + V G+ +V + +A S + ++
Sbjct: 375 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG----DIAVAAC 430
Query: 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT 410
I+ GK + S+ C A + +
Sbjct: 431 YKHIAIYS-------------------HGKL----------TEVPISYNSSCVALSNDKQ 461
Query: 411 VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470
G D+ V+ H ++ V FS
Sbjct: 462 FVAVGGQDSKVHVYKL------SGASVSEVK--TIVHPAEITSVAFS------------- 500
Query: 471 FKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPL 528
++ +V + I + + WT +H
Sbjct: 501 ---------------NNGAFLVATDQSRKVIPYSVANNFELAHTNSWT--FH-------- 535
Query: 529 PPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSA 588
V + WS DN + +D + VWN S + +
Sbjct: 536 ----------------TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH 579
Query: 589 SSYVLDVHPFNP---RIAMSAGYDGRTIVWDI 617
+ ++ I SAG D W++
Sbjct: 580 AMSSVNSV-IWLNETTIV-SAGQDSNIKFWNV 609
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 1e-40
Identities = 60/445 (13%), Positives = 116/445 (26%), Gaps = 115/445 (25%)
Query: 239 LRGHRDAVYCAIFDRSGRFVIT--GSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
R R +G + G+ V + S+ H T S +
Sbjct: 14 PRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIY---TEHSHQTTVAKTSPS 70
Query: 297 NTLVASASNDFVIRVWRLPDGLPI--SVLRGHTGAVTAIAFSP---RPSAIYQLLSSSD- 350
AS +R+W I + + +G V I++ R + + +
Sbjct: 71 GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR------IAAVGEG 124
Query: 351 -DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNA 407
+ ++ TG SN L + +
Sbjct: 125 RERFGHVFLFD-----------------TGTSNGN----------LTGQARAMNSVDFKP 157
Query: 408 NGTVF-VTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSA 466
+ ++GS D ++ P H V+ V+++
Sbjct: 158 SRPFRIISGSDDNTVAIFEG---------PPFKFKSTFGEHTKFVHSVRYN--------- 199
Query: 467 MSDAFKEENVPKFKNSWFCHD--NIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVP 524
D + DG+ +++ +G G V
Sbjct: 200 -------------------PDGSLFASTGGDGTIVLY-------NGVDGT-----KTGVF 228
Query: 525 PPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT 584
G V + WS D + +A D I +WN + ++
Sbjct: 229 EDDSLKNVAHSG----------SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP 278
Query: 585 -GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDG-KFSPDG 642
G L + + S +G + G+ ++ G K + S DG
Sbjct: 279 VGTRIEDQQLGIIWTKQALV-SISANGFINFVNPELGSIDQVRY-GHNKAITALSSSADG 336
Query: 643 TSIV-LSDDVGQIYLLNTGQGESQK 666
++ + G I + G S +
Sbjct: 337 KTLFSADAE-GHINSWDISTGISNR 360
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 2e-19
Identities = 44/347 (12%), Positives = 87/347 (25%), Gaps = 124/347 (35%)
Query: 321 SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGK 380
S+ R G + +P I Q + + T +
Sbjct: 12 SLPRTARGTAVVLGNTPAGDKI-QYCNGTSVYTVPVGS---------------------- 48
Query: 381 SNVPSNNGPSSSNGLQSH--QILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPI 438
+ + H Q + +G +G R+W + +
Sbjct: 49 --------LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDT-----TQTTHIL 95
Query: 439 HELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCS--R 494
+ V + + ++ I R
Sbjct: 96 --KTTIPVFSGPVKDISWD----------------------------SESKRIAAVGEGR 125
Query: 495 DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS 554
+ +++ + S+G G + S
Sbjct: 126 ERFGHVFLFDTGTSNG---------------------------------NLTGQARAMNS 152
Query: 555 L----DNRFVLA-AIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP---RIAMSA 606
+ F + D + ++ + H + +V V +NP A S
Sbjct: 153 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH--TKFVHSVR-YNPDGSLFA-ST 208
Query: 607 GYDGRTIVWDIWEGTPIRIYEIGRFKLV--DGK-----FSPDGTSIV 646
G DG ++++ +GT ++E K V G +SPDGT I
Sbjct: 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 255
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-14
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 2/87 (2%)
Query: 231 QKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFC--LASCRGHEGDI 288
++ + H V C + + TGS D V +W+M + H
Sbjct: 524 FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSS 583
Query: 289 TDLAVSSNNTLVASASNDFVIRVWRLP 315
+ + N T + SA D I+ W +P
Sbjct: 584 VNSVIWLNETTIVSAGQDSNIKFWNVP 610
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 8e-49
Identities = 91/429 (21%), Positives = 145/429 (33%), Gaps = 121/429 (28%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
++ K L+GH D V G +++GSDD +K+WS T CL + GH G + +
Sbjct: 109 KSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM 167
Query: 294 SSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT 353
N ++ S S D ++VW G I L GHT V + + +++S S D T
Sbjct: 168 RDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK-----RVVSGSRDAT 220
Query: 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGTV 411
R+WD TG+ L H + C Y +G
Sbjct: 221 LRVWDIE-----------------TGQCLHV----------LMGHVAAVRCVQY--DGRR 251
Query: 412 FVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471
V+G+ D +VW ++E +H L GH N V +QF G
Sbjct: 252 VVSGAYDFMVKVWDP------ETETCLH---TLQGHTNRVYSLQFDG------------- 289
Query: 472 KEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531
++V+ S D S +W +
Sbjct: 290 ---------------IHVVSGSLDTSIRVWDVETG------------------------- 309
Query: 532 PPRGGPRQRLLPTPRGVNMIVWSL---DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSA 588
+ T G + + DN V D + +W+ G + +L G +
Sbjct: 310 --------NCIHTLTGHQSLTSGMELKDNILVSGN-ADSTVKIWDIKTGQCLQTLQGPNK 360
Query: 589 -SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDG-----KFSPDG 642
S V + FN +++ DG +WD+ G IR G + S
Sbjct: 361 HQSAVTCLQ-FNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK 419
Query: 643 TSIVL-SDD 650
+ S +
Sbjct: 420 LVCAVGSRN 428
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 9e-45
Identities = 92/463 (19%), Positives = 149/463 (32%), Gaps = 123/463 (26%)
Query: 212 RAPSVCSACYAIAKPST----MVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLV 267
+A C +A+ + ++ + L R V F S R+
Sbjct: 41 QAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRID 100
Query: 268 KIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHT 327
W +GH+ + + + S S+D ++VW G + L GHT
Sbjct: 101 TNWRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 159
Query: 328 GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387
G V + ++S S D T ++W+A TG+
Sbjct: 160 GGVWSSQMRDN-----IIISGSTDRTLKVWNAE-----------------TGECIHT--- 194
Query: 388 GPSSSNGLQSHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS 445
L H + C + V+GS D RVW ++ Q +H VL
Sbjct: 195 -------LYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDI------ETGQCLH---VLM 236
Query: 446 GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 505
GH V VQ+ G +V+ + D +W P +
Sbjct: 237 GHVAAVRCVQYDG----------------------------RRVVSGAYDFMVKVWDPET 268
Query: 506 RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL--DNRFVLAA 563
+ L T +G V+SL D V++
Sbjct: 269 ---------------------------------ETCLHTLQGHTNRVYSLQFDGIHVVSG 295
Query: 564 IMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPI 623
+D I VW+ G+ +H+LTGH S + I +S D +WDI G +
Sbjct: 296 SLDTSIRVWDVETGNCIHTLTGH--QSLTSGME-LKDNILVSGNADSTVKIWDIKTGQCL 352
Query: 624 RIYEIGRFKLVDG--KFSPDGTSIVL-SDDVGQIYL--LNTGQ 661
+ + G K + ++ SDD G + L L TG+
Sbjct: 353 QTLQ-GPNKHQSAVTCLQFNKNFVITSSDD-GTVKLWDLKTGE 393
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 2e-42
Identities = 71/396 (17%), Positives = 134/396 (33%), Gaps = 118/396 (29%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
+ ++ L GH V+ + +I+GS DR +K+W+ ET C+ + GH + + +
Sbjct: 150 KCLRTLVGHTGGVWSSQM--RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 207
Query: 294 SSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT 353
V S S D +RVW + G + VL GH AV + + R +++S + D
Sbjct: 208 HEK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR-----RVVSGAYDFM 260
Query: 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH--QILCCAYNANGTV 411
++WD T LQ H ++ ++ G
Sbjct: 261 VKVWDPE-----------------TETCLHT----------LQGHTNRVYSLQFD--GIH 291
Query: 412 FVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471
V+GS DT RVW ++ IH L+GH++ + ++
Sbjct: 292 VVSGSLDTSIRVWDV------ETGNCIH---TLTGHQSLTSGMELKD------------- 329
Query: 472 KEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531
+ +V+ + D + IW ++
Sbjct: 330 ---------------NILVSGNADSTVKIWDIKT-------------------------- 348
Query: 532 PPRGGPRQRLLPTPRGVNMIVWSL--DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSA- 588
G Q L + + V L + FV+ + D + +W+ G + +L +
Sbjct: 349 ---GQCLQTLQGPNKHQSA-VTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 404
Query: 589 --SSYVLDVHPFNP--RIAMSAGYDG--RTIVWDIW 618
V + + + +G T + +
Sbjct: 405 GSGGVVWRIR-ASNTKLVCAVGSRNGTEETKLL-VL 438
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 9e-34
Identities = 47/202 (23%), Positives = 86/202 (42%), Gaps = 36/202 (17%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDIT 289
+ + L+GH + VY FD G V++GS D +++W +ET C+ + GH+ +
Sbjct: 266 PETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS 323
Query: 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRG---HTGAVTAIAFSPRPSAIYQLL 346
+ + N ++ S + D +++W + G + L+G H AVT + F+ ++
Sbjct: 324 GMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN-----FVI 376
Query: 347 SSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYN 406
+SSDDGT ++WD + TG+ N + +G + +
Sbjct: 377 TSSDDGTVKLWDLK-----------------TGEFI---RNLVTLESGGSGGVVWRIRAS 416
Query: 407 ANGTVFVTGSSD----TFARVW 424
V GS + T V
Sbjct: 417 NTKLVCAVGSRNGTEETKLLVL 438
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 4e-21
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 19/138 (13%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRG---HEGDITD 290
I L GH+ +++G+ D VKIW ++T CL + +G H+ +T
Sbjct: 310 NCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 367
Query: 291 LAVSSNNTLVASASNDFVIRVWRLPDGLPISVL-----RGHTGAVTAIAFSPRPSAIYQL 345
L + N V ++S+D +++W L G I L G G V I S
Sbjct: 368 LQFNKN--FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL---VC 422
Query: 346 LSSSDDGTC----RIWDA 359
S +GT + D
Sbjct: 423 AVGSRNGTEETKLLVLDF 440
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 5e-18
Identities = 53/346 (15%), Positives = 91/346 (26%), Gaps = 109/346 (31%)
Query: 287 DITDLAVSSN-NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQL 345
+ DL ++ + D ++ + + L V F P ++
Sbjct: 35 EPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSP---WKS 91
Query: 346 LSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ-ILCCA 404
W KS L+ H +
Sbjct: 92 AYIRQHRIDTNWRRG-----------------ELKS----------PKVLKGHDDHVITC 124
Query: 405 YNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASR 464
G V+GS D +VWSA + + + L GH V Q
Sbjct: 125 LQFCGNRIVSGSDDNTLKVWSA------VTGKCLR---TLVGHTGGVWSSQMRD------ 169
Query: 465 SAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVP 524
+ I++ S D + +W +
Sbjct: 170 ----------------------NIIISGSTDRTLKVWNAETGE----------------- 190
Query: 525 PPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL--DNRFVLAAIMDCRICVWNAVDGSLVHS 582
+ T G V + + V++ D + VW+ G +H
Sbjct: 191 ----------------CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV 234
Query: 583 LTGHSASSYVLDVHPFNPRIAMSAGYDGRTI-VWDIWEGTPIRIYE 627
L GH A+ V V ++ R +S YD + VWD T + +
Sbjct: 235 LMGHVAA--VRCVQ-YDGRRVVSGAYD-FMVKVWDPETETCLHTLQ 276
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 178 bits (455), Expect = 1e-48
Identities = 57/446 (12%), Positives = 112/446 (25%), Gaps = 105/446 (23%)
Query: 238 KLRGHRDAVYCAI---FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVS 294
+ G+ V F++ G + D +++
Sbjct: 48 VVLGNSRGVDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM-LKRADYTAVDTAK 106
Query: 295 SNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP--RPSAIYQLLSSSDDG 352
+ + I+V L + + H +T + F P L+SSS D
Sbjct: 107 LQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGE-----ALISSSQDM 161
Query: 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGT 410
+IW + G + L H+ + A G
Sbjct: 162 QLKIWSVK-----------------DGSNPRT----------LIGHRATVTDIAIIDRGR 194
Query: 411 VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV-QFSGCAVASRSAMSD 469
++ S D R+W + IH + + VN + F G +
Sbjct: 195 NVLSASLDGTIRLWEC------GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS 248
Query: 470 AFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPP 527
K N F ++ G + S
Sbjct: 249 --------KKNNLEFGTYGKYVIAGHVSGVITVHNVFS---------------------- 278
Query: 528 LPPQPPRGGPRQRLLPTPRGVNMIVWSL-----DNRFVLAAIMDCRICVWNAVDG--SLV 580
+++ + P SL + ++ A + + W+ +
Sbjct: 279 ----------KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG 328
Query: 581 HSLTGHSASSYVLDVHPFNP--RIAMSAGYDGRTI-VWDIWEGTPIRIYEIGRFKLVDGK 637
L + + +V+ F S+G+D +I + I + R
Sbjct: 329 EFLINE--GTPINNVY-FAAGALFV-SSGFD-TSIKLDIISDPESERPAIEFETPTFLVS 383
Query: 638 FSPDGTSIVLS-DDVGQIYLLNTGQG 662
+ DD +L G+
Sbjct: 384 NDDAVSQFCYVSDDESNGEVLEVGKN 409
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 4e-43
Identities = 54/400 (13%), Positives = 106/400 (26%), Gaps = 92/400 (23%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
K+ D R I G+ + +K+ + H +IT L +
Sbjct: 91 SKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPS 150
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356
+ S+S D +++W + DG L GH VT IA R +LS+S DGT R+
Sbjct: 151 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR---NVLSASLDGTIRL 207
Query: 357 WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH--QILCCAYNANGTVFVT 414
W+ I+ + N + + + + + G +
Sbjct: 208 WECGTGT---TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA 264
Query: 415 GSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEE 474
G V + S++ +L S N + G
Sbjct: 265 GHVSGVITVHNV------FSKEQTIQL--PSKFTCSCNSLTVDG---------------- 300
Query: 475 NVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQP 532
++ I +G W RS
Sbjct: 301 -----------NNANYIYAGYENGMLAQWDLRSP-------------------------- 323
Query: 533 PRGGPRQRLLPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSA 588
+ +N + ++ FV + D I + D
Sbjct: 324 -----ECPVGEFLINEGTPINNVYFAAGALFVSSG-FDTSIKLDIISDPESERPAIEFET 377
Query: 589 SSYVLDVHPFNPRIA-----------MSAGYDGRTIVWDI 617
++++ + + G + ++++
Sbjct: 378 PTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNL 417
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 6e-33
Identities = 39/255 (15%), Positives = 70/255 (27%), Gaps = 63/255 (24%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDIT 289
+ + H + F SG +I+ S D +KIWS++ + GH +T
Sbjct: 126 SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVT 185
Query: 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTG--------------------- 328
D+A+ V SAS D IR+W G I
Sbjct: 186 DIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEI 245
Query: 329 ---AVTAIAFSP--RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383
+ F + +++ G + + + + +
Sbjct: 246 STSKKNNLEFGTYGK-----YVIAGHVSGVITVHNVF-----------------SKEQTI 283
Query: 384 PSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442
+ + S + N G + W + E P+ E
Sbjct: 284 QLPSKFTCS-------CNSLTVDGNNANYIYAGYENGMLAQW-----DLRSPECPVGE-- 329
Query: 443 VLSGHENDVNYVQFS 457
L +N V F+
Sbjct: 330 FLINEGTPINNVYFA 344
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 1e-32
Identities = 40/401 (9%), Positives = 92/401 (22%), Gaps = 107/401 (26%)
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWS------METAFCLASCRGHEG---DITDL 291
+ A + V+ +D+ + + E G+
Sbjct: 3 HMTKTITVAHIQYDFKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGN 62
Query: 292 AVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD 351
+ + A D ++ + + + + + +
Sbjct: 63 TFEKVGSHLYKARLDGHDFLFNTIIRDGSK-MLKRADYTAVDTAKLQMR---RFILGTTE 118
Query: 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANG 409
G ++ D+ Q+H I + +G
Sbjct: 119 GDIKVLDSN-----------------FNLQREI----------DQAHVSEITKLKFFPSG 151
Query: 410 TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSD 469
++ S D ++WS L GH V +
Sbjct: 152 EALISSSQDMQLKIWSV------KDGSNPR---TLIGHRATVTDIAII------------ 190
Query: 470 AFKEENVPKFKNSWFCHD--NIVTCSRDGSAIIWIPRSRRS------HGKVGRWTRAYHL 521
N+++ S DG+ +W + + + L
Sbjct: 191 ----------------DRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 234
Query: 522 KVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG-SLV 580
V RQ + N + + ++V+A + I V N +
Sbjct: 235 FVG-----------TDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTI 283
Query: 581 HSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTI-VWDI 617
+ + + I + +G + WD+
Sbjct: 284 QLPSKF--TCSCNSLTVDGNNANYIY-AGYENG-MLAQWDL 320
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 2e-32
Identities = 34/251 (13%), Positives = 67/251 (26%), Gaps = 55/251 (21%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEG------- 286
N + L GHR V GR V++ S D +++W T + + E
Sbjct: 172 SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNS 231
Query: 287 -----------------DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS-VLRGHTG 328
+L + V + VI V + + T
Sbjct: 232 IALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC 291
Query: 329 AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388
+ ++ + + + ++G WD R + + V
Sbjct: 292 SCNSLTVDGNNANY--IYAGYENGMLAQWDLR-----------------SPECPV----- 327
Query: 389 PSSSNGLQSHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG 446
L + I + A V+ DT ++ E L
Sbjct: 328 ---GEFLINEGTPINNVYFAAGALF-VSSGFDTSIKLDIISDPESERPAIEFETPTFLVS 383
Query: 447 HENDVNYVQFS 457
+++ V+ +
Sbjct: 384 NDDAVSQFCYV 394
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 1e-23
Identities = 13/134 (9%), Positives = 40/134 (29%), Gaps = 13/134 (9%)
Query: 239 LRGHRDAVYC-AIFDRSGRFVITGSDDRLVKIWSMETAFCLAS--CRGHEGDITDLAVSS 295
+ + + ++ G ++ ++ W + + C I ++ +
Sbjct: 286 PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY-FA 344
Query: 296 NNTLVASASNDFVIRVWRLPDGLPISVLRGH---------TGAVTAIAFSPRPSAIYQLL 346
L S+ D I++ + D AV+ + + ++L
Sbjct: 345 AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVL 404
Query: 347 SSSDDGTCRIWDAR 360
+ C +++
Sbjct: 405 EVGKNNFCALYNLS 418
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 1e-13
Identities = 36/357 (10%), Positives = 77/357 (21%), Gaps = 131/357 (36%)
Query: 325 GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384
T +T +L +D+ + + K V
Sbjct: 3 HMTKTITVAHIQY---DFKAVLEENDENDDEFYINV---------DKNLNEIKEHKIVVL 50
Query: 385 SNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL 444
N+ + + G+ D +++ L
Sbjct: 51 GNSRGVDA-------GKGNTFEKVGSHLYKARLDGHDFLFNT------IIRDGSKML--- 94
Query: 445 SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWI 502
+ + + +G +
Sbjct: 95 -KRADYTAVDTAK----------------------------LQMRRFILGTTEGDIKVLD 125
Query: 503 PRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG----VNMIVWSLDNR 558
+ + + +
Sbjct: 126 SNFNL---------------------------------QREIDQAHVSEITKLKFFPSGE 152
Query: 559 FVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTI-V 614
++++ D ++ +W+ DGS +L GH A+ V D+ + SA DG TI +
Sbjct: 153 ALISSSQDMQLKIWSVKDGSNPRTLIGHRAT--VTDIA-IIDRGRNVL-SASLDG-TIRL 207
Query: 615 WDIWEGTPIRIYEIGRFKLVDG-------------------------KFSPDGTSIV 646
W+ GT I + + DG +F G ++
Sbjct: 208 WECGTGTTIHTFN-RKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI 263
|
| >3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 2e-36
Identities = 0/395 (0%), Positives = 0/395 (0%), Gaps = 122/395 (30%)
Query: 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFS 336
++ + G L+ + AI
Sbjct: 17 QDIQMMLAADVHLGTKNCDFQMER-YVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENP 75
Query: 337 P--RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394
+ + A+ ++
Sbjct: 76 QDII-----VQSARPYGQRAVLKFAQ-----------------YTGAHAI---------- 103
Query: 395 LQSHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVN 452
H + + +
Sbjct: 104 AGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQP--IKESALGNIPTIAFCDTDSPMRYV 161
Query: 453 YVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN---IVTCSRDGSAIIWIPRSRRSH 509
+ +N + +
Sbjct: 162 DIGIP----------------------------ANNKGKQSIGCLFWLLARMVLQM---- 189
Query: 510 GKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP-RGVNMIVWSL-----DNRFVLAA 563
G A
Sbjct: 190 -------------------------RGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAAL 224
Query: 564 IMDCRICVWNAVD-GSLVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTI-VWDIW 618
+ V + + P
Sbjct: 225 VAPDYGAVAEYAAPAADTWGGEWG--TDAAAQPA-AIPAQAGAD-WTAAPA-PAAGGWDT 279
Query: 619 EGTPIRIYEIGRFKLVDGK-------FSPDGTSIV 646
P +E G +
Sbjct: 280 AAAPAPGWEQGSAPVPAAAPTPNWGE 314
|
| >3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 1e-08
Identities = 11/241 (4%), Positives = 31/241 (12%), Gaps = 88/241 (36%)
Query: 429 SSVEDSEQPI----HELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWF 484
++ + + + + +
Sbjct: 2 AAEGGAAARALSQREQDIQMMLAADVHLGTKNC--------------------------- 34
Query: 485 CHD-NIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLP 543
+ + I+I G ++L
Sbjct: 35 -DFQMERYVYKRRTDGIYIINL-----------------------------GKTWEKL-- 62
Query: 544 TPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFN 599
+ + I D A R + A H +
Sbjct: 63 --QLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRH--TPGTFTNQ-LQ 117
Query: 600 P---RIAMSAGYDGRTI-VWDIWEGTPIRIYEIGRFKLVDG--------KFSPDGTSIVL 647
+ + + F +
Sbjct: 118 TSFSEPR-LLILT-DPRTDHQPIKESALGNIPTIAFCD-TDSPMRYVDIGIPANNKGKQS 174
Query: 648 S 648
Sbjct: 175 I 175
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 3e-48
Identities = 81/394 (20%), Positives = 142/394 (36%), Gaps = 113/394 (28%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
L GH AV F +G ++ + S D+L+KIW + GH+ I+D+A SS
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 75
Query: 296 NNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355
++ L+ SAS+D +++W + G + L+GH+ V F+P+ + ++S S D + R
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN---LIVSGSFDESVR 132
Query: 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGTVFV 413
IWD + TGK L +H + +N +G++ V
Sbjct: 133 IWDVK-----------------TGKCLKT----------LPAHSDPVSAVHFNRDGSLIV 165
Query: 414 TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473
+ S D R+W S Q + L + V++V+FS
Sbjct: 166 SSSYDGLCRIWDT------ASGQCLKTL--IDDDNPPVSFVKFS---------------- 201
Query: 474 ENVPKFKNSWFCHD--NIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531
+ I+ + D + +W
Sbjct: 202 ------------PNGKYILAATLDNTLKLWDYSKG------------------------- 224
Query: 532 PPRGGPRQRLLPTPRGVNMIVWSL-------DNRFVLAAIMDCRICVWNAVDGSLVHSLT 584
+ L T G + + +++++ D + +WN +V L
Sbjct: 225 --------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276
Query: 585 GHSASSYVLDVHPFNPRIAMSAGYDG-RTI-VWD 616
GH+ HP IA SA + +TI +W
Sbjct: 277 GHTDVVISTACHPTENIIA-SAALENDKTIKLWK 309
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 154 bits (393), Expect = 2e-41
Identities = 78/402 (19%), Positives = 132/402 (32%), Gaps = 123/402 (30%)
Query: 260 TGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP 319
T S VK + GH ++ + S N +AS+S D +I++W DG
Sbjct: 2 TQSKPTPVK----PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 57
Query: 320 ISVLRGHTGAVTAIAFSP--RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAI 377
+ GH ++ +A+S L+S+SDD T +IWD
Sbjct: 58 EKTISGHKLGISDVAWSSDSN-----LLVSASDDKTLKIWDVS----------------- 95
Query: 378 TGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE 435
+GK L+ H + CC +N + V+GS D R+W +
Sbjct: 96 SGKCLKT----------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV------KTG 139
Query: 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCS 493
+ + L H + V+ V F+ D IV+ S
Sbjct: 140 KCLK---TLPAHSDPVSAVHFN----------------------------RDGSLIVSSS 168
Query: 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG-----V 548
DG IW S + L T V
Sbjct: 169 YDGLCRIWDTASG---------------------------------QCLKTLIDDDNPPV 195
Query: 549 NMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP---RIAMS 605
+ + +S + +++LAA +D + +W+ G + + TGH Y + + I S
Sbjct: 196 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV-S 254
Query: 606 AGYDGRTIVWDIWEGTPIRIYEIGRFKLVDG-KFSPDGTSIV 646
D +W++ ++ + G +V P I
Sbjct: 255 GSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHPTENIIA 295
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 1e-39
Identities = 50/270 (18%), Positives = 98/270 (36%), Gaps = 63/270 (23%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
+ K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 56 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 115
Query: 294 SSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT 353
+ + L+ S S D +R+W + G + L H+ V+A+ F+ S ++SSS DG
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---LIVSSSYDGL 172
Query: 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFV 413
CRIWD +G+ + + + ++ NG +
Sbjct: 173 CRIWDTA-----------------SGQCLKTLIDD-------DNPPVSFVKFSPNGKYIL 208
Query: 414 TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473
+ D ++W + + +GH+N+ +
Sbjct: 209 AATLDNTLKLWDY------SKGKCLK---TYTGHKNEKYCIFA----------------- 242
Query: 474 ENVPKFKNSWFCHDN--IVTCSRDGSAIIW 501
++ IV+ S D IW
Sbjct: 243 --------NFSVTGGKWIVSGSEDNLVYIW 264
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 144 bits (367), Expect = 4e-38
Identities = 52/246 (21%), Positives = 97/246 (39%), Gaps = 51/246 (20%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
+ +K L+GH + V+C F+ +++GS D V+IW ++T CL + H ++ +
Sbjct: 98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157
Query: 294 SSNNTLVASASNDFVIRVWRLPDGLPISVL-RGHTGAVTAIAFSP--RPSAIYQLLSSSD 350
+ + +L+ S+S D + R+W G + L V+ + FSP + +L+++
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-----YILAATL 212
Query: 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNA- 407
D T ++WD GK H+ C N
Sbjct: 213 DNTLKLWDYS-----------------KGKCLKT----------YTGHKNEKYCIFANFS 245
Query: 408 --NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVAS 463
G V+GS D +W+ +++ + L GH + V +AS
Sbjct: 246 VTGGKWIVSGSEDNLVYIWNL------QTKEIVQ---KLQGHTDVVISTACHPTENIIAS 296
Query: 464 RSAMSD 469
+ +D
Sbjct: 297 AALEND 302
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 5e-31
Identities = 36/198 (18%), Positives = 73/198 (36%), Gaps = 32/198 (16%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLAS-CRGHEGDITDLA 292
+ +K L H D V F+R G +++ S D L +IW + CL + ++ +
Sbjct: 140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 199
Query: 293 VSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG 352
S N + +A+ D +++W G + GH I + + ++S S+D
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Query: 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGT 410
IW+ + T + LQ H ++ A +
Sbjct: 260 LVYIWNLQ-----------------TKEIVQK----------LQGHTDVVISTACHPTEN 292
Query: 411 VFVTGS--SDTFARVWSA 426
+ + + +D ++W +
Sbjct: 293 IIASAALENDKTIKLWKS 310
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 4e-25
Identities = 73/381 (19%), Positives = 124/381 (32%), Gaps = 131/381 (34%)
Query: 301 ASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP--RPSAIYQLLSSSDDGTCRIWD 358
A+ S ++ P+ L GHT AV+++ FSP L SSS D +IW
Sbjct: 1 ATQSKPTPVK----PNYALKFTLAGHTKAVSSVKFSPNGE-----WLASSSADKLIKIWG 51
Query: 359 ARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGTVFVTGS 416
A GK + H+ I A++++ + V+ S
Sbjct: 52 AY-----------------DGKFEKT----------ISGHKLGISDVAWSSDSNLLVSAS 84
Query: 417 SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476
D ++W S + + L GH N V F+
Sbjct: 85 DDKTLKIWDV------SSGKCLK---TLKGHSNYVFCCNFN------------------- 116
Query: 477 PKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534
+ IV+ S D S IW ++
Sbjct: 117 ---------PQSNLIVSGSFDESVRIWDVKTG---------------------------- 139
Query: 535 GGPRQRLLPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASS 590
+ L T V+ + ++ D ++++ D +W+ G + +L +
Sbjct: 140 -----KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-NP 193
Query: 591 YVLDVHPFNP---RIAMSAGYDGRTI-VWDIWEGTPIRIYE--IGRFKLVDGKFS-PDGT 643
V V F+P I +A D T+ +WD +G ++ Y + FS G
Sbjct: 194 PVSFV-KFSPNGKYIL-AATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 250
Query: 644 SIVL-SDDVGQIYL--LNTGQ 661
IV S+D +Y+ L T +
Sbjct: 251 WIVSGSED-NLVYIWNLQTKE 270
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 1e-47
Identities = 77/404 (19%), Positives = 131/404 (32%), Gaps = 127/404 (31%)
Query: 234 QNIKKLRGHRDAVYCAIF----DRSGRFVITGSDDRLVKIWSMET--AFCLASCRGHEGD 287
K+ + H DA++ + + V+TGS D LVK+W S GH+
Sbjct: 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLG 82
Query: 288 ITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP--RPSAIYQL 345
+ + +S + AS+S D IR+W L +G I + +AFSP + L
Sbjct: 83 VVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ-----YL 137
Query: 346 LSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCC 403
+ + G I+ +GK L + IL
Sbjct: 138 ATGTHVGKVNIFGVE-----------------SGKKEYS----------LDTRGKFILSI 170
Query: 404 AYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVAS 463
AY+ +G +G+ D ++ + + +H L GH + + FS
Sbjct: 171 AYSPDGKYLASGAIDGIINIFDI------ATGKLLH---TLEGHAMPIRSLTFS------ 215
Query: 464 RSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHL 521
D+ +VT S DG I+ +
Sbjct: 216 ----------------------PDSQLLVTASDDGYIKIYDVQHA--------------- 238
Query: 522 KVPPPPLPPQPPRGGPRQRLLPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDG 577
L T G V + + D+ +++ D + VW+
Sbjct: 239 ------------------NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR 280
Query: 578 SLVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTI-VWDI 617
+ VH+ H V V +N +I S G D + I ++D
Sbjct: 281 TCVHTFFDH--QDQVWGV-KYNGNGSKIV-SVGDD-QEIHIYDC 319
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 2e-43
Identities = 69/415 (16%), Positives = 131/415 (31%), Gaps = 130/415 (31%)
Query: 258 VITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNN----TLVASASNDFVIRVWR 313
S + L + + + H+ I +A +N V + S D +++VW+
Sbjct: 5 HHHSSRENLYFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWK 64
Query: 314 LPDG--LPISVLRGHTGAVTAIAFSP--RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIY 369
D L GH V ++ S SSS D R+WD
Sbjct: 65 WRDERLDLQWSLEGHQLGVVSVDISHTLP-----IAASSSLDAHIRLWDLE--------- 110
Query: 370 LPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGTVFVTGSSDTFARVWSAC 427
GK + + A++ + TG+ ++
Sbjct: 111 --------NGKQIKS----------IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV- 151
Query: 428 KSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHD 487
+S + + L + + +S D
Sbjct: 152 -----ESGKKEY---SLDTRGKFILSIAYS----------------------------PD 175
Query: 488 N--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545
+ + + DG I+ + +LL T
Sbjct: 176 GKYLASGAIDGIINIFDIATG---------------------------------KLLHTL 202
Query: 546 RG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP- 600
G + + +S D++ ++ A D I +++ +L +L+GH +S+VL+V F P
Sbjct: 203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH--ASWVLNVA-FCPD 259
Query: 601 --RIAMSAGYDGRTI-VWDIWEGTPIRIYEIGRFKLVDG-KFSPDGTSIVL-SDD 650
S+ D +++ VWD+ T + + V G K++ +G+ IV DD
Sbjct: 260 DTHFV-SSSSD-KSVKVWDVGTRTCVHTFF-DHQDQVWGVKYNGNGSKIVSVGDD 311
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 1e-41
Identities = 52/290 (17%), Positives = 93/290 (32%), Gaps = 61/290 (21%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDL 291
++ L GH+ V + + S D +++W +E + S D L
Sbjct: 69 RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTL 128
Query: 292 AVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP--RPSAIYQLLSSS 349
A S ++ +A+ ++ + ++ + G L + +IA+SP + L S +
Sbjct: 129 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK-----YLASGA 183
Query: 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNA 407
DG I+D TGK L+ H I ++
Sbjct: 184 IDGIINIFDIA-----------------TGKLLHT----------LEGHAMPIRSLTFSP 216
Query: 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVASRS 465
+ + VT S D + +++ LSGH + V V F S S
Sbjct: 217 DSQLLVTASDDGYIKIYDV------QHANLAG---TLSGHASWVLNVAFCPDDTHFVSSS 267
Query: 466 AMS-----DAFKEENVPKFK--NSW-----FCHDN--IVTCSRDGSAIIW 501
+ D V F + + IV+ D I+
Sbjct: 268 SDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 91.0 bits (227), Expect = 1e-19
Identities = 55/322 (17%), Positives = 90/322 (27%), Gaps = 111/322 (34%)
Query: 343 YQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--I 400
+ SS + +Y L K Q+H I
Sbjct: 3 HHHHHSSRENLYFQGTNQYGI------LFKQ---------------------EQAHDDAI 35
Query: 401 LCCAYNAN----GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF 456
A+ N VTGS D +VW E+ L GH+ V V
Sbjct: 36 WSVAWGTNKKENSETVVTGSLDDLVKVWKW------RDERLD-LQWSLEGHQLGVVSVDI 88
Query: 457 SGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGR 514
S H + S D +W + +
Sbjct: 89 S----------------------------HTLPIAASSSLDAHIRLWDLENGK------- 113
Query: 515 WTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 574
+ G P + +S D++++ ++ ++
Sbjct: 114 --------------QIKSIDAG--------PVDAWTLAFSPDSQYLATGTHVGKVNIFGV 151
Query: 575 VDGSLVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTI-VWDIWEGTPIRIYEIGR 630
G +SL ++L + ++P +A S DG I ++DI G + E G
Sbjct: 152 ESGKKEYSLDTR--GKFILSIA-YSPDGKYLA-SGAIDG-IINIFDIATGKLLHTLE-GH 205
Query: 631 FKLVDG-KFSPDGTSIVL-SDD 650
+ FSPD +V SDD
Sbjct: 206 AMPIRSLTFSPDSQLLVTASDD 227
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 3e-17
Identities = 18/82 (21%), Positives = 34/82 (41%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
L GH V F ++ S D+ VK+W + T C+ + H+ + +
Sbjct: 239 NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY 298
Query: 294 SSNNTLVASASNDFVIRVWRLP 315
+ N + + S +D I ++ P
Sbjct: 299 NGNGSKIVSVGDDQEIHIYDCP 320
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 4e-47
Identities = 81/407 (19%), Positives = 133/407 (32%), Gaps = 124/407 (30%)
Query: 231 QKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITD 290
M+ + L+GH + V C + + R +++ S D V +W T + +
Sbjct: 52 FVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMA 111
Query: 291 LAVSSNNTLVASASNDFVIRVWRLPDGLP------ISVLRGHTGAVTAIAFSPRPSAIYQ 344
A + + +A D V+ L + HT ++A +F+ Q
Sbjct: 112 CAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM---Q 168
Query: 345 LLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILC 402
+L++S DGTC +WD +G+ H +LC
Sbjct: 169 ILTASGDGTCALWDVE-----------------SGQLLQS----------FHGHGADVLC 201
Query: 403 CAY--NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--G 458
+ G FV+G D A VW S Q + HE+DVN V++ G
Sbjct: 202 LDLAPSETGNTFVSGGCDKKAMVWDM------RSGQCVQ---AFETHESDVNSVRYYPSG 252
Query: 459 CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRA 518
A AS S D + ++ R+ R V +++
Sbjct: 253 DAFAS----------------------------GSDDATCRLYDLRADRE---VAIYSKE 281
Query: 519 YHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS 578
+ G + + +SL R + A D I VW+ + GS
Sbjct: 282 SII------------------------FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317
Query: 579 LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIV---WD----IW 618
V L GH + V + +P DG WD +W
Sbjct: 318 RVSILFGH--ENRVSTLR-VSP--------DGTAFCSGSWDHTLRVW 353
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 6e-42
Identities = 60/435 (13%), Positives = 115/435 (26%), Gaps = 123/435 (28%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET--------------AFCLASCRGH 284
G + A + ++ K+ +E + +GH
Sbjct: 4 TDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGH 63
Query: 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP--RPSAI 342
+ + + + S+S D + VW + V A A++P
Sbjct: 64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC---- 119
Query: 343 YQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--I 400
+ D C ++ + + K + H +
Sbjct: 120 -AIACGGLDNKCSVYPLTFDKNENMAAKKKS---------------------VAMHTNYL 157
Query: 401 LCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460
C++ + +T S D +W +S Q + GH DV + +
Sbjct: 158 SACSFTNSDMQILTASGDGTCALWDV------ESGQLLQ---SFHGHGADVLCLDLAPSE 208
Query: 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYH 520
+ V+ D A++W RS
Sbjct: 209 TGNT------------------------FVSGGCDKKAMVWDMRSG-------------- 230
Query: 521 LKVPPPPLPPQPPRGGPRQRLLPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVD 576
+ + VN + + + D +++
Sbjct: 231 -------------------QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA 271
Query: 577 GSLVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTI-VWDIWEGTPIRIYEIGRFK 632
V + S V F+ + AGY+ TI VWD+ +G+ + I G
Sbjct: 272 DREVAIYSKESIIFGASSVD-FSLSGRLLF--AGYNDYTINVWDVLKGSRVSILF-GHEN 327
Query: 633 LVDG-KFSPDGTSIV 646
V + SPDGT+
Sbjct: 328 RVSTLRVSPDGTAFC 342
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 2e-41
Identities = 51/248 (20%), Positives = 81/248 (32%), Gaps = 43/248 (17%)
Query: 224 AKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRG 283
K + H + + F S ++T S D +W +E+ L S G
Sbjct: 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG 194
Query: 284 HEGDITDLAVS--SNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP--RP 339
H D+ L ++ S D VW + G + H V ++ + P
Sbjct: 195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD- 253
Query: 340 SAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399
S SDD TCR++D R + V + S G
Sbjct: 254 ----AFASGSDDATCRLYDLR-----------------ADRE-VAIYSKESIIFG----- 286
Query: 400 ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS-- 457
++ +G + G +D VW + +L GHEN V+ ++ S
Sbjct: 287 ASSVDFSLSGRLLFAGYNDYTINVWDV------LKGSRVS---ILFGHENRVSTLRVSPD 337
Query: 458 GCAVASRS 465
G A S S
Sbjct: 338 GTAFCSGS 345
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 1e-36
Identities = 40/200 (20%), Positives = 71/200 (35%), Gaps = 40/200 (20%)
Query: 234 QNIKKLRGHRDAVYCAIF--DRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDL 291
Q ++ GH V C +G ++G D+ +W M + C+ + HE D+ +
Sbjct: 187 QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSV 246
Query: 292 AVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGH--TGAVTAIAFSP--RPSAIYQLLS 347
+ AS S+D R++ L +++ +++ FS R L +
Sbjct: 247 RYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGR-----LLFA 301
Query: 348 SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAY 405
+D T +WD G L H+ +
Sbjct: 302 GYNDYTINVWDVL-----------------KGSRVSI----------LFGHENRVSTLRV 334
Query: 406 NANGTVFVTGSSDTFARVWS 425
+ +GT F +GS D RVW+
Sbjct: 335 SPDGTAFCSGSWDHTLRVWA 354
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 4e-29
Identities = 67/420 (15%), Positives = 116/420 (27%), Gaps = 141/420 (33%)
Query: 280 SCRGHEGDITDLAVSSNNTLVASASNDFVIRVW--------------RLPDGLPISVLRG 325
+ G + T ++ S + + ++ L+G
Sbjct: 3 ATDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKG 62
Query: 326 HTGAVTAIAFSP--RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383
H V + + R +++SSS DG +WD+ T
Sbjct: 63 HGNKVLCMDWCKDKR-----RIVSSSQDGKVIVWDSF-----------------TTNKEH 100
Query: 384 PSNNGPSSSNGLQSHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHEL 441
+ ++ CAY +G G D V+ E+
Sbjct: 101 A----------VTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKS- 149
Query: 442 DVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAI 499
++ H N ++ F+ + + I+T S DG+
Sbjct: 150 --VAMHTNYLSACSFT----------------------------NSDMQILTASGDGTCA 179
Query: 500 IWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG----VNMIVWSL 555
+W S +LL + G V + +
Sbjct: 180 LWDVESG---------------------------------QLLQSFHGHGADVLCLDLAP 206
Query: 556 D---NRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP---RIAMSAGYD 609
N FV D + VW+ G V + H S V V + P A S D
Sbjct: 207 SETGNTFVSGG-CDKKAMVWDMRSGQCVQAFETH--ESDVNSVR-YYPSGDAFA-SGSDD 261
Query: 610 GRTI-VWDIWEGTPIRIYE----IGRFKLVDGKFSPDGTSIVL-SDDVGQIYLLNTGQGE 663
T ++D+ + IY I VD FS G + +D I + + +G
Sbjct: 262 A-TCRLYDLRADREVAIYSKESIIFGASSVD--FSLSGRLLFAGYND-YTINVWDVLKGS 317
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 1e-05
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWS 271
V K + L GH + V G +GS D +++W+
Sbjct: 313 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 181 bits (460), Expect = 1e-46
Identities = 76/436 (17%), Positives = 136/436 (31%), Gaps = 101/436 (23%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDL 291
K+ K D V F + +V+T V+IW+ ET + S + E +
Sbjct: 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAG 61
Query: 292 AVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD 351
+ + S+DF IRV+ G + H + +IA P +LS SDD
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP---YVLSGSDD 118
Query: 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYN-ANGT 410
T ++W+ + + G H ++C A+N + +
Sbjct: 119 LTVKLWNWE-----------------NNWALEQTFEG-------HEHFVMCVAFNPKDPS 154
Query: 411 VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470
F +G D +VWS P L +G E VNYV +
Sbjct: 155 TFASGCLDRTVKVWSL------GQSTPNFTL--TTGQERGVNYVDYYPLPDKPY------ 200
Query: 471 FKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPP 530
++T S D + IW +++
Sbjct: 201 ------------------MITASDDLTIKIWDYQTK------------------------ 218
Query: 531 QPPRGGPRQRLLPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH 586
+ T G V+ V+ +++ D + +WN+ + +L
Sbjct: 219 ---------SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
Query: 587 SASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIV 646
S+ + HP + +++G+D V + P + KLV +S +
Sbjct: 270 LERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLD-PVGKLV---WSGGKNAAA 325
Query: 647 LSDDVGQIYLLNTGQG 662
I +
Sbjct: 326 SDIFTAVIRGNEEVEQ 341
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 3e-41
Identities = 74/471 (15%), Positives = 136/471 (28%), Gaps = 108/471 (22%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDIT 289
+ ++ ++ V F ++I GSDD +++++ T + H I
Sbjct: 42 YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR 101
Query: 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLPIS-VLRGHTGAVTAIAFSPRPSAIYQLLSS 348
+AV V S S+D +++W + + GH V +AF+P+ + S
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST--FASG 159
Query: 349 SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAY--N 406
D T ++W N G Q + Y
Sbjct: 160 CLDRTVKVWSLG-----------------QSTPNFTLTTG-------QERGVNYVDYYPL 195
Query: 407 ANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSA 466
+ +T S D ++W S + L GH ++V++ F
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFH--------- 237
Query: 467 MSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS----HGKVGR-WTRAYHL 521
P I++ S DG+ IW + + + + R W A H
Sbjct: 238 ----------PTLP-------IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH- 279
Query: 522 KVPPPPLPPQPPRGGP-----------------RQRLLPTPRGVNMIVWSLDNRFVLAAI 564
P G + V +VWS + I
Sbjct: 280 -----------PTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDI 328
Query: 565 MDCRICVWNAVDGSL---VHSLTGHSASSYVLDVHPFNP-RIAMSAGYDGRTIVWDIWEG 620
I V+ + + S + + +P ++ DG +++
Sbjct: 329 FTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLA-HSPNGRFVTVVGDGEYVIYTALAW 387
Query: 621 TPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKYD 671
+ F + PD S L D+ GQI + +
Sbjct: 388 RNKAFGKCQDF-----VWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPMH 433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 3e-32
Identities = 63/423 (14%), Positives = 119/423 (28%), Gaps = 113/423 (26%)
Query: 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFS 336
+ + + V + + +W + + ++ V A F
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 337 PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396
R + ++ SDD R+++ TG+ V +
Sbjct: 65 ARKN---WIIVGSDDFRIRVFNYN-----------------TGEKVVD----------FE 94
Query: 397 SHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV 454
+H I A + ++GS D ++W+ ++ + + GHE+ V V
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW------ENNWALEQ--TFEGHEHFVMCV 146
Query: 455 QFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKV 512
F+ PK D + D + +W + +
Sbjct: 147 AFN-------------------PK--------DPSTFASGCLDRTVKVWSLGQSTPNFTL 179
Query: 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL--DNRFVLAAIMDCRIC 570
+ GVN + + D +++ A D I
Sbjct: 180 TTG----QER------------------------GVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 571 VWNAVDGSLVHSLTGHSASSYVLDV--HPFNPRIAMSAGYDGRTI-VWDIWEGTPIRI-- 625
+W+ S V +L GH S V HP P I S DG T+ +W+ +
Sbjct: 212 IWDYQTKSCVATLEGH--MSNVSFAVFHPTLPIII-SGSEDG-TLKIWNSSTYKVEKTLN 267
Query: 626 YEIGRFKLVDGKFSPDGTSIVL---SDDVGQIYLLNTGQGESQKDAKYDQFFLGDYRPLI 682
+ R + P G + D+ + L + D + G
Sbjct: 268 VGLERSWCI--ATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAA 325
Query: 683 RDS 685
D
Sbjct: 326 SDI 328
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 4e-32
Identities = 54/417 (12%), Positives = 99/417 (23%), Gaps = 112/417 (26%)
Query: 239 LRGHRDAVYCAIF--DRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
G V + ++IT SDD +KIW +T C+A+ GH +++
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356
++ S S D +++W L IA P ++S D +
Sbjct: 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN--YIASGFDNGFTV 297
Query: 357 WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS 416
+ P+ S + NA + T
Sbjct: 298 LSLG-----------------NDE--------PTLSLDPVGKLVWSGGKNAAASDIFTAV 332
Query: 417 SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVASRSAMSDAFKEE 474
V +D + L + + S G V
Sbjct: 333 IRGNEEVE-------QDEPLSLQ-TKELGSVDVFPQSLAHSPNGRFVTV----------- 373
Query: 475 NVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534
I R
Sbjct: 374 -----------------VGDGEYVIYTALAWRNKAFG----------------------- 393
Query: 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLD 594
VW D+ +I + S+ HSA +
Sbjct: 394 ------------KCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPMHSAIDRLFS 441
Query: 595 VHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVL-SDD 650
+ DG +D GT +R ++ ++ +S +G +++ + +
Sbjct: 442 GA------LLGVKSDGFVYFFDWDNGTLVRRIDVNAKDVI---WSDNGELVMIVNTN 489
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 1e-18
Identities = 40/282 (14%), Positives = 69/282 (24%), Gaps = 62/282 (21%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
+ L GH V A+F + +I+GS+D +KIW+ T + +A
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
Query: 296 N--NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT 353
+AS D V L + P L V + + S I+
Sbjct: 281 TGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIF-------TAV 332
Query: 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGTV 411
R + + + P + L S A++ NG
Sbjct: 333 IRGNE-------------------EVEQDEP---LSLQTKELGSVDVFPQSLAHSPNGRF 370
Query: 412 FVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVASRS---- 465
+ + L + + + A
Sbjct: 371 VTVVGDGEYVIYTA---------------LAWRNKAFGKCQDFVWGPDSNSYALIDETGQ 415
Query: 466 -AMSDAFKEENVPKFKNSWFCHDNIVT-----CSRDGSAIIW 501
FKE D + + DG +
Sbjct: 416 IKYYKNFKEVTSWSVPMH-SAIDRLFSGALLGVKSDGFVYFF 456
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 2e-13
Identities = 42/263 (15%), Positives = 75/263 (28%), Gaps = 59/263 (22%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGR--FVITGSDDRLVKIWSMETAFCLASCRGHEGD 287
+ K L + +C +GR ++ +G D+ + S+ S
Sbjct: 257 SSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGNDEPTLSLDPV--- 312
Query: 288 ITDLAVSSNNTLVASASNDFVIRVW-RLPDGLPISV----LRGHTGAVTAIAFSPRPSAI 342
L S AS VIR + P+S+ L ++A SP
Sbjct: 313 -GKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPN---- 367
Query: 343 YQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGK--SNVPSNNGPSSSNGLQSHQI 400
+ ++ DG I+ + GK V + S + ++ QI
Sbjct: 368 GRFVTVVGDGEYVIYT-----------ALAWRNKAFGKCQDFVWGPDSNSYALIDETGQI 416
Query: 401 LCCAYNANGTVF----------------VTGSSDTFARVWSACKSSVEDSEQPIHELDVL 444
T + + SD F + D+ + +DV
Sbjct: 417 KYYKNFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDW------DNGTLVRRIDV- 469
Query: 445 SGHENDVNYVQFS--GCAVASRS 465
+ V +S G V +
Sbjct: 470 -----NAKDVIWSDNGELVMIVN 487
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 2e-10
Identities = 21/199 (10%), Positives = 52/199 (26%), Gaps = 33/199 (16%)
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV 300
G ++A IF R D + + + LA S N V
Sbjct: 319 GGKNAAASDIFTAVIRGNEEVEQDEPLSLQ-------TKELGSVDVFPQSLAHSPNGRFV 371
Query: 301 ASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360
+ + ++ G + P + + G + +
Sbjct: 372 TVVGDGEYVIYT------ALAWRNKAFGKCQDFVWGPDSN---SYALIDETGQIKYYKNF 422
Query: 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL-----QSHQILC--------CAYNA 407
S + + D + + + G S + + ++ ++
Sbjct: 423 KEVTSWSVPMHSAIDRLFSGALL----GVKSDGFVYFFDWDNGTLVRRIDVNAKDVIWSD 478
Query: 408 NGTVFVTGSSDTFARVWSA 426
NG + + ++++ S
Sbjct: 479 NGELVMIVNTNSNGDEASG 497
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-06
Identities = 10/138 (7%), Positives = 35/138 (25%), Gaps = 11/138 (7%)
Query: 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLA 292
+ ++ + +K + S H + +
Sbjct: 382 YTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPMH----SAID 437
Query: 293 VSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG 352
+ L+ S+ F + + +G + + + + +S ++ + +
Sbjct: 438 RLFSGALLGVKSDGF-VYFFDWDNGTLVRRIDVN---AKDVIWSDNGE---LVMIVNTNS 490
Query: 353 TCRIWDARYSQYSPRIYL 370
++ YL
Sbjct: 491 NGDEASGYTLLFNKDAYL 508
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 3e-45
Identities = 65/404 (16%), Positives = 124/404 (30%), Gaps = 100/404 (24%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD--ITDLAVSSN 296
H SG S D +++WS+ A + D DL S N
Sbjct: 19 AWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHN 78
Query: 297 NTLVASASNDFVIRVW----RLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG 352
N ++A A ++ + ++ ++ H+ +V + F+ + + L S ++G
Sbjct: 79 NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNV--LASGGNNG 136
Query: 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN-GTV 411
IWD SP Y P P + +++ A+N + V
Sbjct: 137 EIFIWDMNKCTESPSNYTPLTPGQSMSSVD----------------EVISLAWNQSLAHV 180
Query: 412 FVTGSSDTFARVWSACKSSVEDSEQPIHEL---DVLSGHENDVNYVQFSGCAVASRSAMS 468
F + S FA +W +++ + L SG + ++ V
Sbjct: 181 FASAGSSNFASIWDL------KAKKEVIHLSYTSPNSGIKQQLS-------VVE------ 221
Query: 469 DAFKEENVPKFKNSWFCHDN---IVTCS---RDGSAIIWIPRSRRSHGKVGRWTRAYHLK 522
+ N + T + D S +IW R+ +
Sbjct: 222 ---------------WHPKNSTRVATATGSDNDPSILIWDLRNANT-------------- 252
Query: 523 VPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS-LDNRFVLAAIMDCRICVWNAVDGSLVH 581
P Q G + +G+ + W D +L++ D + +WN +
Sbjct: 253 ------PLQTLNQGHQ-------KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS 299
Query: 582 SLTGHSASSYVLDV--HPFNPRIAMSAGYDGRTIVWDIWEGTPI 623
++ P P + A +D + V + T
Sbjct: 300 QFPAR--GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT 341
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 3e-38
Identities = 48/402 (11%), Positives = 117/402 (29%), Gaps = 93/402 (23%)
Query: 261 GSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI 320
G+ +VK+ A H+ ++ + + T+ A+ S D + +W L
Sbjct: 1 GAMGSMVKLAEFSRTATFA--WSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE 58
Query: 321 SVLRGHTG--AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAIT 378
+ + +S + I + + D+G+ ++
Sbjct: 59 KPIASLQVDSKFNDLDWSH-NNKI--IAGALDNGSLELYSTN-----------------E 98
Query: 379 GKSNVPSNNGPSSSNGLQSHQ--ILCCAYN-ANGTVFVTGSSDTFARVWSACKSSVEDSE 435
+ + S +H + +N V +G ++ +W K + S
Sbjct: 99 ANNAINS------MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN 152
Query: 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD 495
++V + ++ + +
Sbjct: 153 YTPLTPGQSMSSVDEVISLAWN-------------------QSLAHV------FASAGSS 187
Query: 496 GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL 555
A IW ++++ L P G + + ++++ W
Sbjct: 188 NFASIWDLKAKK----------------EVIHLSYTSPNSGIK-------QQLSVVEWHP 224
Query: 556 DNRFVLA----AIMDCRICVWNAVDGS--LVHSLTGHSASSYVLDV--HPFNPRIAMSAG 607
N +A + D I +W+ + + L GH +L + + + +S+G
Sbjct: 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQ--KGILSLDWCHQDEHLLLSSG 282
Query: 608 YDGRTIVWDIWEGTPIRIYEIGRFKLV-DGKFSPDGTSIVLS 648
D ++W+ + + R KF+P+ +
Sbjct: 283 RDNTVLLWNPESAEQLSQFP-ARGNWCFKTKFAPEAPDLFAC 323
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 1e-31
Identities = 49/442 (11%), Positives = 118/442 (26%), Gaps = 112/442 (25%)
Query: 234 QNIKKLRGHR--DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF----CLASCRGHEGD 287
+ K + + + + + + D+ ++++S A +A H
Sbjct: 56 DSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSS 115
Query: 288 ITDLAVSSNN-TLVASASNDFVIRVW---------RLPDGLPISVLRGHTGAVTAIAFSP 337
+ + ++ ++AS N+ I +W L V ++A++
Sbjct: 116 VKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQ 175
Query: 338 RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQS 397
+ + S+ IWD + K V + S ++G++
Sbjct: 176 SLAHV--FASAGSSNFASIWDLK-----------------AKKE-VIHLSYTSPNSGIKQ 215
Query: 398 HQILCCAYNANG-TVFVTGSSDTF---ARVWSACKSSVEDSEQPIHELDVLSGHENDVNY 453
+ ++ T T + +W + ++ P+ L GH+ +
Sbjct: 216 Q-LSVVEWHPKNSTRVATATGSDNDPSILIWD-----LRNANTPLQTL--NQGHQKGILS 267
Query: 454 VQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG 513
+ + D +++ RD + ++W P S
Sbjct: 268 LDWC---------HQD----------------EHLLLSSGRDNTVLLWNPES-------- 294
Query: 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA-AIMDCRICVW 572
+ ++ + + A A D +I V
Sbjct: 295 ---------------------AEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQ 333
Query: 573 NAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI--WEGTPIRIYEIGR 630
+ + + +N + W G P
Sbjct: 334 TLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWA- 392
Query: 631 FKLVDGK---FSPDGTSIVLSD 649
GK +PDG + +++
Sbjct: 393 ---FGGKLVQITPDGKGVSITN 411
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-27
Identities = 35/253 (13%), Positives = 78/253 (30%), Gaps = 55/253 (21%)
Query: 226 PSTMVQKMQNIKKLRGHRDAVYCAIFD-RSGRFVITGSDDRLVKIWSMET---------A 275
+ + ++ + H +V F+ + + +G ++ + IW M
Sbjct: 96 TNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP 155
Query: 276 FCLASCRGHEGDITDLAVSSNN-TLVASASNDFVIRVWRLPDGLPISVL------RGHTG 328
++ LA + + + ASA + +W L + L G
Sbjct: 156 LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQ 215
Query: 329 AVTAIAFSPRPSAIYQLLSSSD-DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387
++ + + P+ S + SD D + IWD R + +
Sbjct: 216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTL------------------ 257
Query: 388 GPSSSNGLQSHQ--ILCCAYN-ANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL 444
Q HQ IL + + + ++ D +W+ +S + + +
Sbjct: 258 -------NQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP------ESAEQLSQFP-- 302
Query: 445 SGHENDVNYVQFS 457
N +F+
Sbjct: 303 -ARGNWCFKTKFA 314
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 4e-21
Identities = 21/137 (15%), Positives = 41/137 (29%), Gaps = 9/137 (6%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRF-VITGS---DDRLVKIWSMETAFCLAS--CRG 283
V + G + + + V T + +D + IW + A +G
Sbjct: 201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG 260
Query: 284 HEGDITDLAVSSNN-TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAI 342
H+ I L + L+ S+ D + +W +S F+P +
Sbjct: 261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDL 320
Query: 343 YQLLSSSDDGTCRIWDA 359
+S D +
Sbjct: 321 --FACASFDNKIEVQTL 335
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 7e-45
Identities = 64/413 (15%), Positives = 124/413 (30%), Gaps = 132/413 (31%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
+ + +L GH V+ + G +++GS DR V++W ++ C GH + L +
Sbjct: 153 KFLLQLSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 211
Query: 294 --SSNNTLVASASNDFVIRVWRLPDG-----------------------LPISVLRGHTG 328
N + + S D + VW+LP + VLRGH
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 271
Query: 329 AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388
+V ++ ++S S D T +WD K
Sbjct: 272 SVRTVSGHGN-----IVVSGSYDNTLIVWDVA-----------------QMKCLYI---- 305
Query: 389 PSSSNGLQSHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG 446
L H I Y+ ++ S DT R+W ++ + ++ L G
Sbjct: 306 ------LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL------ENGELMY---TLQG 350
Query: 447 HENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 506
H V ++ S +V+ + DGS W
Sbjct: 351 HTALVGLLRLSD----------------------------KFLVSAAADGSIRGWDAND- 381
Query: 507 RSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD 566
R+ + + + + +++ +
Sbjct: 382 -----------------------------YSRKFSYHHTNLSAITTFYVSDNILVSG-SE 411
Query: 567 CRICVWNAVDGSLVHS-LTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618
+ ++N G LVH+ + + + V+ F + ++A +I
Sbjct: 412 NQFNIYNLRSGKLVHANILKD--ADQIWSVN-FKGKTLVAAVEKDGQSFLEIL 461
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 3e-43
Identities = 81/485 (16%), Positives = 146/485 (30%), Gaps = 133/485 (27%)
Query: 212 RAPSVCSACYAIAKPS----------TMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITG 261
+ V I + S + L Y + + +
Sbjct: 37 NSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFL 96
Query: 262 SDDRLVKIW-SMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI 320
+ ++K W + + + RGH + + + V + ++D +IRV+ + +
Sbjct: 97 ENIFILKNWYNPKFVPQRTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFL 155
Query: 321 SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGK 380
L GH G V A+ ++ L+S S D T R+WD + G
Sbjct: 156 LQLSGHDGGVWALKYAHGG----ILVSGSTDRTVRVWDIK-----------------KGC 194
Query: 381 SNVPSNNGPSSSNGLQSHQ----ILCCAYNANGTVFVTGSSDTFARVWSA---------- 426
+ H L N VTGS D VW
Sbjct: 195 CTHV----------FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 244
Query: 427 ----CKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNS 482
E+ + + VL GH V V G
Sbjct: 245 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG------------------------ 280
Query: 483 WFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLL 542
+ +V+ S D + I+W + L
Sbjct: 281 ----NIVVSGSYDNTLIVWDVAQM---------------------------------KCL 303
Query: 543 PTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPF 598
G + ++ + + ++A MD I +W+ +G L+++L GH ++ V +
Sbjct: 304 YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH--TALVGLLR-L 360
Query: 599 NPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDG-KFSPDGTSIVL-SDDVGQIYL 656
+ + +SA DG WD + + R + L F +V S++ IY
Sbjct: 361 SDKFLVSAAADGSIRGWDANDYS--RKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYN 418
Query: 657 LNTGQ 661
L +G+
Sbjct: 419 LRSGK 423
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 1e-31
Identities = 66/398 (16%), Positives = 119/398 (29%), Gaps = 96/398 (24%)
Query: 242 HRDAVYCAIFDRSGRFVITGSD---DRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
D + ++ +I S +L+ + + S +
Sbjct: 32 FEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRL 91
Query: 299 LVASASNDFVIRVWRLPDGLP-ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357
++ N F+++ W P +P + LRGH +V +++ +DD R++
Sbjct: 92 RLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDN----YVITGADDKMIRVY 147
Query: 358 DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGTVFVTG 415
D+ K + L H + Y A+G + V+G
Sbjct: 148 DSI-----------------NKKFLLQ----------LSGHDGGVWALKY-AHGGILVSG 179
Query: 416 SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475
S+D RVW H V GH + V +
Sbjct: 180 STDRTVRVWDI------KKGCCTH---VFEGHNSTVRCLDIV------------------ 212
Query: 476 VPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPP 533
+ IVT SRD + +W S G + P
Sbjct: 213 --------EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE------ 258
Query: 534 RGGPRQRLLPTPRGVNMIVWSL--DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSY 591
+ RG V ++ V++ D + VW+ ++ L+GH +
Sbjct: 259 ----NPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH--TDR 312
Query: 592 VLDVHPFNP---RIAMSAGYDGRTI-VWDIWEGTPIRI 625
+ ++ R SA D TI +WD+ G +
Sbjct: 313 IYSTI-YDHERKRCI-SASMD-TTIRIWDLENGELMYT 347
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 5e-28
Identities = 39/200 (19%), Positives = 66/200 (33%), Gaps = 36/200 (18%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDIT 289
V +M+ + L GH D +Y I+D + I+ S D ++IW +E + + +GH +
Sbjct: 297 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG 356
Query: 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS 349
L +S + SA+ D IR W D HT F +L S
Sbjct: 357 LLRLSD--KFLVSAAADGSIRGWDANDYSRK-FSYHHTNLSAITTFYVSD----NILVSG 409
Query: 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG 409
+ I++ R +GK + + I + G
Sbjct: 410 SENQFNIYNLR-----------------SGKLVHANILKDADQ-------IWSVNF--KG 443
Query: 410 TVFVTGSSD---TFARVWSA 426
V +F +
Sbjct: 444 KTLVAAVEKDGQSFLEILDF 463
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 2e-44
Identities = 57/460 (12%), Positives = 124/460 (26%), Gaps = 116/460 (25%)
Query: 234 QNIKKLRGHRDAVYCAIFDRS-GRFVITGSDDRLVKIWSMETAFCLA------------- 279
++ R H + + GR++++G D ++ ++ +E + +
Sbjct: 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRD 93
Query: 280 SCRGHEGDITDLAVSSN-NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPR 338
H + + + + S+S D ++VW V V + SP
Sbjct: 94 HPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF-NFEETVYSHHMSPV 152
Query: 339 PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH 398
+ + + ++ D + +G + LQ H
Sbjct: 153 STKHCLVAVGTRGPKVQLCDLK-----------------SGSCSHI----------LQGH 185
Query: 399 Q--ILCCAYNANG-TVFVTGSSDTFARVWSACKSS-------VEDSEQPIHELDVLSGHE 448
+ IL +++ + T S+D+ ++W ++S + ++ + H
Sbjct: 186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHN 245
Query: 449 NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSR 506
VN + F+ D ++T D +W +
Sbjct: 246 GKVNGLCFT----------------------------SDGLHLLTVGTDNRMRLWNSSNG 277
Query: 507 RSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD 566
G + +G+ V + +
Sbjct: 278 E---------------------NTLVNYGKVCN---NSKKGLKFTVSCGCSSEFVFVPYG 313
Query: 567 CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTI-VWDIWEGTPIRI 625
I V+ G + L GH + + S D I W P+
Sbjct: 314 STIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELY-SGSRD-CNILAWVPSLYEPVP- 370
Query: 626 YEIGRFKLVDG-KFSPDGTSIVL-SDDVGQIYLLNTGQGE 663
+ + +P SD+ G + Q E
Sbjct: 371 ---DDDETTTKSQLNPAFEDAWSSSDEEGGTSAWSHPQFE 407
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 2e-41
Identities = 61/429 (14%), Positives = 114/429 (26%), Gaps = 116/429 (27%)
Query: 249 AIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVS-SNNTLVASASNDF 307
A + + ++ +E R H G I L + + S +D
Sbjct: 7 ARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDG 66
Query: 308 VIRVWRLPDGLPISVLR-------------GHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354
VI ++ L + S H +V + + P + + SSS D T
Sbjct: 67 VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM--FTSSSFDKTL 124
Query: 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT---V 411
++WD T + + + + T +
Sbjct: 125 KVWDTN-----------------TLQ--------TADVFNF-EETVYSHHMSPVSTKHCL 158
Query: 412 FVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471
G+ ++ S H +L GH ++ V +S
Sbjct: 159 VAVGTRGPKVQLCDL------KSGSCSH---ILQGHRQEILAVSWS-------------- 195
Query: 472 KEENVPKFKNSWFCHDN---IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPL 528
+ T S D +W R
Sbjct: 196 --------------PRYDYILATASADSRVKLWDVRRASGCLI----------------- 224
Query: 529 PPQPPRGGPRQRLLPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT 584
G Q + VN + ++ D +L D R+ +WN+ +G
Sbjct: 225 TLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNY 284
Query: 585 GHSASSYVLDVH-----PFNPRIAMSAGYDGRTI-VWDIWEGTPIRIYEIGRFKLVDG-K 637
G ++ + + G TI V+ ++ G I + + G +K VD
Sbjct: 285 GKVCNNSKKGLKFTVSCGCSSEFVFVP--YGSTIAVYTVYSGEQITMLK-GHYKTVDCCV 341
Query: 638 FSPDGTSIV 646
F + +
Sbjct: 342 FQSNFQELY 350
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 4e-44
Identities = 60/453 (13%), Positives = 121/453 (26%), Gaps = 107/453 (23%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRF-VITGSDDRLVKIWSMETAFCLASCR---GHEGDIT 289
++ ++ GH + +S +T DD V + AS R +
Sbjct: 151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR 210
Query: 290 DLAVSSNN-TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348
D+ S ++ V + +D I + G + + V F+ + +
Sbjct: 211 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATV 270
Query: 349 SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN 408
D T R+WD T K V G Q + N
Sbjct: 271 GADATIRVWDVT-----------------TSKC-VQKWTLDKQQLGNQQ---VGVVATGN 309
Query: 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468
G + ++ S D + ++ + +SGH + + +
Sbjct: 310 GRI-ISLSLDGTLNFYEL------GHDEVLK---TISGHNKGITALTVN----------- 348
Query: 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPL 528
P +++ S DG + W S L
Sbjct: 349 --------P-----------LISGSYDGRIMEWSSSS----MHQDHSNLIVSLDNSK--- 382
Query: 529 PPQPPRGGPRQRLL---------------PTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 573
Q + + ++ F D + +
Sbjct: 383 ------A---QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQ 433
Query: 574 AVDGSLVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTIVWDIWEGTPIRIYEIGR 630
+ G ++ S+ +S S + + N + + D+ ++ +
Sbjct: 434 SFTGDIIKSVRLNSPGS-AVSLS-QNYVAVGLE-EGNTIQVFKLSDLEVSFDLKTPLRAK 490
Query: 631 FKLVDGKFSPDGTSIVLSDDVGQIYL--LNTGQ 661
+ SP T I D +G+I L L + +
Sbjct: 491 PSYIS--ISPSETYIAAGDVMGKILLYDLQSRE 521
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 1e-42
Identities = 64/488 (13%), Positives = 140/488 (28%), Gaps = 139/488 (28%)
Query: 232 KMQNIKKLRGHR-DAVYCAIF--DRSGRFVITGSDDRLVKIWSMETAFCLASC------- 281
K+ + + GH V F + +++ +G + V +W S
Sbjct: 52 KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE 111
Query: 282 -RGHEGDITDLAVSSNNTL--VASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP- 337
+ G I+D++ V D G + + GH+ + A
Sbjct: 112 FQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQS 171
Query: 338 RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQS 397
RP + ++ DDG+ + K + +S
Sbjct: 172 RP---MRSMTVGDDGSVVFYQGP-----------------PFKFS-------ASDRTHHK 204
Query: 398 HQ--ILCCAYNAN-GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV 454
+ ++ + G +T SD + S + + + + V
Sbjct: 205 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDG------KSGEFLKY---IEDDQEPVQGG 255
Query: 455 QFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGR 514
F+ + +S T D + +W + + V +
Sbjct: 256 IFA-------------------LSWLDS----QKFATVGADATIRVWDVTTSKC---VQK 289
Query: 515 WTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 574
WT + V + N +++ +D + +
Sbjct: 290 WTLDKQ-----------------------QLGNQQVGVVATGNGRIISLSLDGTLNFYEL 326
Query: 575 VDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI----------------- 617
++ +++GH+ L V+P + S YDGR + W
Sbjct: 327 GHDEVLKTISGHNKGITALTVNP----LI-SGSYDGRIMEWSSSSMHQDHSNLIVSLDNS 381
Query: 618 ---------WEGTPIRIYEIGRFKLVDG----KFSPDGTSIVLSDDVGQIYLLNTGQGES 664
W+ T +++ I + + + DG + VL++D + +L + G+
Sbjct: 382 KAQEYSSISWDDT-LKVNGITKHEFGSQPKVASANNDGFTAVLTND-DDLLILQSFTGDI 439
Query: 665 QKDAKYDQ 672
K + +
Sbjct: 440 IKSVRLNS 447
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 2e-41
Identities = 54/466 (11%), Positives = 117/466 (25%), Gaps = 154/466 (33%)
Query: 236 IKKLRGHRDAVYCAIF---DRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLA 292
+K + ++ V IF + T D +++W + T+ C+ + + +
Sbjct: 242 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 301
Query: 293 VS---SNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS 349
V + N + S S D + + L + + GH +TA+ +P L+S S
Sbjct: 302 VGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP-------LISGS 354
Query: 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH--QILCCAYNA 407
DG W + S+ Q H I+ +
Sbjct: 355 YDGRIMEWSS--------------------------------SSMHQDHSNLIVSLDN-S 381
Query: 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQP-------------------IHELDVLSG-- 446
+ + S D +V + E QP + L +G
Sbjct: 382 KAQEYSSISWDDTLKVNGI--TKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI 439
Query: 447 -------HENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAI 499
+ + AV + +
Sbjct: 440 IKSVRLNSPGSAVSLSQNYVAVG--------------------------LEEGNTIQVFK 473
Query: 500 IWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRF 559
+ +V + R + I S +
Sbjct: 474 LS-------DLEVSFDLKTPL-------------RA-----------KPSYISISPSETY 502
Query: 560 VLAAIMDCRICVWNAVDGSLVHS-LTGHSASSYVLDVHPFNP-------------RIAMS 605
+ A + +I +++ + S ++ + + + P +A +
Sbjct: 503 IAAGDVMGKILLYDLQSREVKTSRWAFRTSK--INAIS-WKPAEKGANEEEIEEDLVA-T 558
Query: 606 AGYDGRTIVWDIWEGTPIRIYEIGRFKLVDG-KFSPDGTSIVLSDD 650
D ++ + I V+ + T + D
Sbjct: 559 GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGAD 604
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 1e-32
Identities = 64/403 (15%), Positives = 108/403 (26%), Gaps = 102/403 (25%)
Query: 282 RGHEGDITDLAVSSNNTLVASAS-NDFVIRVWRLPDG--LPISVLRGH-TGAVTAIAFSP 337
T L+ +A +R D P+ GH + VT + FSP
Sbjct: 15 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 74
Query: 338 RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQS 397
+ Y L S + G +W K + S + +
Sbjct: 75 IKGSQY-LCSGDESGKVIVWGWT-----------------FDKESNSVEVNVKSEFQVLA 116
Query: 398 HQILCCAYNANGT--VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455
I +++ G V D F S DS + E +SGH +N
Sbjct: 117 GPISDISWDFEGRRLCVVGEGRDNFGVFISW------DSGNSLGE---VSGHSQRINACH 167
Query: 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN---IVTCSRDGSAIIWIPRSRRSHGKV 512
+T DGS + + G
Sbjct: 168 LK----------------------------QSRPMRSMTVGDDGSVVFY-------QGPP 192
Query: 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN-RFVLAAIMDCRICV 571
++ + V + +S D+ FV+ D +I
Sbjct: 193 FKF-------------------SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC 233
Query: 572 WNAVDGSLVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTI-VWDIWEGTPIRIYE 627
++ G + + + A + G D TI VWD+ ++ +
Sbjct: 234 FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA-TVGAD-ATIRVWDVTTSKCVQKWT 291
Query: 628 I----GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666
+ + V + +G I LS D G + G E K
Sbjct: 292 LDKQQLGNQQVGVVATGNGRIISLSLD-GTLNFYELGHDEVLK 333
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 2e-32
Identities = 49/416 (11%), Positives = 93/416 (22%), Gaps = 126/416 (30%)
Query: 240 RGHRDAVYCAIFDRSGRFVITGS-DDRLVKIWSMETAFC--LASCRGHEGD-ITDLAVS- 294
R+ +D + + V+ + + GH +T + S
Sbjct: 15 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 74
Query: 295 -SNNTLVASASNDFVIRVW--------RLPDGLPISVLRGHTGAVTAIAFSP---RPSAI 342
+ + S + VW + S + G ++ I++ R +
Sbjct: 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 134
Query: 343 YQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--I 400
D +G S + H I
Sbjct: 135 ----GEGRDNFGVFISWD-----------------SGNSLGE----------VSGHSQRI 163
Query: 401 LCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGC 459
C + +T D + + + V V+FS
Sbjct: 164 NACHLKQSRPMRSMTVGDDGSVVFYQG------PPFKFSASDRTHHKQGSFVRDVEFS-- 215
Query: 460 AVASRSAMSDAFKEENVPKFKNSWFCHDN---IVTCSRDGSAIIWIPRSRRSHGKVGRWT 516
D+ ++T D + GK G
Sbjct: 216 --------------------------PDSGEFVITVGSDRKISCF-------DGKSGE-- 240
Query: 517 RAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL---DNRFVLAAIMDCRICVWN 573
+ V +++L D++ D I VW+
Sbjct: 241 ------------FLKYIEDD--------QEPVQGGIFALSWLDSQKFATVGADATIRVWD 280
Query: 574 AVDGSLVHSLTGHSASSYVLDVHPF---NPRIAMSAGYDGRTI-VWDIWEGTPIRI 625
V T V N RI S DG T+ +++ ++
Sbjct: 281 VTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII-SLSLDG-TLNFYELGHDEVLKT 334
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 7e-29
Identities = 27/202 (13%), Positives = 67/202 (33%), Gaps = 40/202 (19%)
Query: 234 QNIKKLRGHRDAVYCAI-FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLA 292
IK +R + ++ + + G+ ++ K+ +E +F L + + ++
Sbjct: 438 DIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT--PLRAKPSYIS 495
Query: 293 VSSNNTLVASASNDFVIRVWRLPDGLPI-SVLRGHTGAVTAIAFSPRPSAIYQ------- 344
+S + T +A+ I ++ L S T + AI++ P +
Sbjct: 496 ISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL 555
Query: 345 LLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILC 402
+ + S D I+ + + + L +H+ +
Sbjct: 556 VATGSLDTNIFIYSVK-----------------RPMKIIKA---------LNAHKDGVNN 589
Query: 403 CAYNANGTVFVTGSSDTFARVW 424
+ T+ V+ +D + W
Sbjct: 590 LLWETPSTL-VSSGADACIKRW 610
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 1e-27
Identities = 31/336 (9%), Positives = 86/336 (25%), Gaps = 93/336 (27%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
+ H + + ++ + + S D +K+ + + +++
Sbjct: 368 HQDHSNLIVSLDNSKAQEYS-SISWDDTLKVNGITK-------HEFGSQPKVASANNDGF 419
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGH-TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357
++D + + + G I +R + G+ +++ + L + ++
Sbjct: 420 TAVLTNDD-DLLILQSFTGDIIKSVRLNSPGSAVSLSQNY---VAVGLEEGNTIQVFKLS 475
Query: 358 DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS 417
D L++ + + + T G
Sbjct: 476 DL--------------------------EVSFDLKTPLRAK-PSYISISPSETYIAAGDV 508
Query: 418 DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477
++ S + + + +N + + + +
Sbjct: 509 MGKILLYDL------QSREVKT--SRWAFRTSKINAISWKPAEKGANEEEIEEDL----- 555
Query: 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537
+ T S D + I+ S + K+ +
Sbjct: 556 -----------VATGSLDTNIFIY---SVKRPMKII-----------------KALNAH- 583
Query: 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 573
GVN ++W + V ++ D I WN
Sbjct: 584 -------KDGVNNLLWETPSTLV-SSGADACIKRWN 611
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 6e-12
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 12/89 (13%)
Query: 237 KKLRGHRDAVYCAIF----------DRSGRFVITGSDDRLVKIWSMETAF-CLASCRGHE 285
+ + + + V TGS D + I+S++ + + H+
Sbjct: 525 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 584
Query: 286 GDITDLAVSSNNTLVASASNDFVIRVWRL 314
+ +L + +TLV S+ D I+ W +
Sbjct: 585 DGVNNLLWETPSTLV-SSGADACIKRWNV 612
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 2e-43
Identities = 59/419 (14%), Positives = 118/419 (28%), Gaps = 106/419 (25%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
KL GH + +++ G + + S D +W L + GH G I + V
Sbjct: 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDV 82
Query: 294 SSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD-- 351
+ S D+ I++W + +G ++ + V + FSP + L+ D+
Sbjct: 83 DCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPV-PVKRVEFSPCGN---YFLAILDNVM 138
Query: 352 ---GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN 408
G+ I++ ++ + ++
Sbjct: 139 KNPGSINIYEIERDS------ATHELTKVSEEPIHKIITHEGLD------AATVAGWSTK 186
Query: 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468
G + G D + D +D + HE ++ +QFS
Sbjct: 187 GKYIIAGHKDGKISKY--------DVSNNYEYVDSIDLHEKSISDMQFS----------- 227
Query: 469 DAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPP 526
D +T SRD ++ + + + LK
Sbjct: 228 -----------------PDLTYFITSSRDTNSFLVDVSTLQ------------VLKK--- 255
Query: 527 PLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL--------------AAIMDCRICVW 572
T +N V + F++ A +
Sbjct: 256 ---------------YETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFY 300
Query: 573 NAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTI-VWDIWEGTPIRIYEIGR 630
+ + + + GH + + P A S G DG I + + Y++ +
Sbjct: 301 HKIFEEEIGRVQGHFGPLNTVAISPQGTSYA-SGGEDG-FIRLHHFEKSYFDFKYDVEK 357
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 1e-38
Identities = 54/424 (12%), Positives = 103/424 (24%), Gaps = 126/424 (29%)
Query: 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL 314
G ++ + GHE +T + + L+ S S D VW
Sbjct: 2 GSSHHHHHHSSGENLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYS 61
Query: 315 PDGLPISVLRGHTGAVTAIAFSP--RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPK 372
+G + L GHTG + +I + ++ S D + ++WD
Sbjct: 62 LNGERLGTLDGHTGTIWSIDVDCFTK-----YCVTGSADYSIKLWDVS------------ 104
Query: 373 PPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFA-----RVWSAC 427
G+ V + P + ++ G F+ + ++
Sbjct: 105 -----NGQC-VATWKSPVP--------VKRVEFSPCGNYFLAILDNVMKNPGSINIYEI- 149
Query: 428 KSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHD 487
+ + HEL +S A +
Sbjct: 150 -----ERDSATHELTKVSEEPIHKIITHEGLDAATVAG------------------WSTK 186
Query: 488 N--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545
I+ +DG + + + +
Sbjct: 187 GKYIIAGHKDGKISKYDVSN--------------------------------NYEYVDSI 214
Query: 546 RG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDV--HPFN 599
++ + +S D + + + D + + ++ + P
Sbjct: 215 DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCP---LNTAVITPLK 271
Query: 600 PRIAMSAGYDGRTIVWDIWEGTP---IRIY------EIGRFKLVDG--------KFSPDG 642
I G V R Y EIGR + G SP G
Sbjct: 272 EFII-LGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ---GHFGPLNTVAISPQG 327
Query: 643 TSIV 646
TS
Sbjct: 328 TSYA 331
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 1e-33
Identities = 44/378 (11%), Positives = 100/378 (26%), Gaps = 105/378 (27%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
+ + L GH ++ D ++ +TGS D +K+W + C+A+ + + +
Sbjct: 65 ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSP-VPVKRVEF 123
Query: 294 SSNNTLVASASNDFV-----IRVWRLPDGLPISVLRGHTG-------------AVTAIAF 335
S + ++ + I ++ + L + A T +
Sbjct: 124 SPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183
Query: 336 SPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL 395
S + +++ DG +D V S +
Sbjct: 184 STKGK---YIIAGHKDGKISKYDVS-----------------NNYEYVDSIDL------- 216
Query: 396 QSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455
I ++ + T F+T S DT + + + Q + + + +N
Sbjct: 217 HEKSISDMQFSPDLTYFITSSRDTNSFLVDV------STLQVLKKY----ETDCPLNTAV 266
Query: 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW 515
+ P + I+ + + + +
Sbjct: 267 IT-------------------PL-------KEFIILGGGQEAKDVTTTSANEGKFEA--- 297
Query: 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG----VNMIVWSLDNRFVLAAIMDCRICV 571
R YH R+ +G +N + S + D I +
Sbjct: 298 -RFYHKI-----------FEEEIGRV----QGHFGPLNTVAISPQGTSYASGGEDGFIRL 341
Query: 572 WNAVDGSLVHSLTGHSAS 589
+ A+
Sbjct: 342 HHFEKSYFDFKYDVEKAA 359
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 7e-29
Identities = 36/220 (16%), Positives = 68/220 (30%), Gaps = 31/220 (14%)
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF-CLASCRGHEGDITDLAVSSNNTL 299
DA A + G+++I G D + + + + + S HE I+D+ S + T
Sbjct: 173 EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTY 232
Query: 300 VASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
++S D + + + + +P I L + A
Sbjct: 233 FITSSRDTNSFLVDVSTLQVLKKYETDCP-LNTAVITPLKEFI-ILGGGQEAKDVTTTSA 290
Query: 360 RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGTVFVTGSS 417
++ R Y I + +Q H + A + GT + +G
Sbjct: 291 NEGKFEARFY-----HKIFEEEIGR----------VQGHFGPLNTVAISPQGTSYASGGE 335
Query: 418 DTFARVWSACKSSVEDSEQPIHELDVLSG-----HENDVN 452
D F R+ + + DV H + N
Sbjct: 336 DGFIRLHHF------EKSYFDFKYDVEKAAEAKEHMQEAN 369
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 5e-28
Identities = 49/375 (13%), Positives = 98/375 (26%), Gaps = 98/375 (26%)
Query: 300 VASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP--RPSAIYQLLSSSDDGTCRIW 357
+ ++ + L GH +T + ++ L S S D + +W
Sbjct: 5 HHHHHHSSGENLYFQGSHMKAIKLTGHERPLTQVKYNKEGD-----LLFSCSKDSSASVW 59
Query: 358 DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGTVFVTG 415
+ G+ L H I + VTG
Sbjct: 60 YSL-----------------NGERLGT----------LDGHTGTIWSIDVDCFTKYCVTG 92
Query: 416 SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVASRSAMSDAFKE 473
S+D ++W + Q + V V+FS G +
Sbjct: 93 SADYSIKLWDV------SNGQCVATW----KSPVPVKRVEFSPCGNYFLAILDN------ 136
Query: 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPP 533
GS I+ T+ +
Sbjct: 137 -----------------VMKNPGSINIY---EIERDSATHELTKVSEEPIHKIITHEGLD 176
Query: 534 RGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG-SLVHSLTGHSASSYV 592
+ WS ++++A D +I ++ + V S+ H +
Sbjct: 177 A-------------ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE--KSI 221
Query: 593 LDVHPFNP---RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVL-- 647
D+ F+P ++ D + + D+ ++ YE L +P I+L
Sbjct: 222 SDMQ-FSPDLTYFI-TSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGG 278
Query: 648 SDDVGQIYLLNTGQG 662
+ + + +G
Sbjct: 279 GQEAKDVTTTSANEG 293
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 8e-25
Identities = 25/159 (15%), Positives = 49/159 (30%), Gaps = 22/159 (13%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
+ + + H ++ F + IT S D + + T L + +
Sbjct: 209 EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETD-CPLNTAVI 267
Query: 294 SSN--------------NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP-- 337
+ T ++ F R + I ++GH G + +A SP
Sbjct: 268 TPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQG 327
Query: 338 RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDA 376
S +DG R+ S + + + K +A
Sbjct: 328 T-----SYASGGEDGFIRLHHFEKSYFDFKYDVEKAAEA 361
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 4e-12
Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 15/114 (13%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRL--------------VKIWSMETA 275
V +Q +KK + A+ F+I G + +
Sbjct: 247 VSTLQVLKKYETDCP-LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE 305
Query: 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGA 329
+ +GH G + +A+S T AS D IR+ A
Sbjct: 306 EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKYDVEKAA 359
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 3e-43
Identities = 66/415 (15%), Positives = 122/415 (29%), Gaps = 110/415 (26%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET----AFCLASCRGHE 285
+ + IK L+ +++ ++ F S + TGS DR +K+ S++ + H+
Sbjct: 1 MASINLIKSLKLYKEKIWSFDF--SQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHK 58
Query: 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP-------ISVLRGHTGAVTAIAFSP- 337
I +A + +L+A+ S D + +W + ++++ GH V +A+S
Sbjct: 59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND 118
Query: 338 -RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396
L + S D + IW+ S LQ
Sbjct: 119 GY-----YLATCSRDKSVWIWETDESGEEYECISV-----------------------LQ 150
Query: 397 SHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV 454
H + ++ + + + S D R+W D + + VL+GHE V
Sbjct: 151 EHSQDVKHVIWHPSEALLASSSYDDTVRIW-----KDYDDDWEC--VAVLNGHEGTVWSS 203
Query: 455 QFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGR 514
F R + + S D + +W
Sbjct: 204 DFDKTEGVFR------------------------LCSGSDDSTVRVWKYMGDD------- 232
Query: 515 WTRAYHLKVPPPPLPPQPPRGGPRQRLLPT-PRGVNMIVWSLDNRFVLAAIMDCRICVWN 573
L R V + W + D + V+
Sbjct: 233 --------------EDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVG-ADGVLAVYE 277
Query: 574 AVDGS----LVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTI-VWDIWEG 620
VDG +L + V I + G DG + W + +
Sbjct: 278 EVDGEWKVFAKRALCHGVYE--INVVKWLELNGKTILATGGDDG-IVNFWSLEKA 329
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 1e-36
Identities = 62/365 (16%), Positives = 109/365 (29%), Gaps = 103/365 (28%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET-------AFCLASCRGHEG 286
++ H+ A+ + + GS D V IW+ E LA GHE
Sbjct: 49 IDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHEN 108
Query: 287 DITDLAVSSNNTLVASASNDFVIRVWRLPDGLP----ISVLRGHTGAVTAIAFSP--RPS 340
++ +A S++ +A+ S D + +W + ISVL+ H+ V + + P
Sbjct: 109 EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-- 166
Query: 341 AIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ- 399
L SSS D T RIW L H+
Sbjct: 167 ---LLASSSYDDTVRIWKDY-----------------DDDWEC--------VAVLNGHEG 198
Query: 400 -ILCCAYNANGTVF--VTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF 456
+ ++ VF +GS D+ RVW +D ++ + E + H+ V V +
Sbjct: 199 TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAW 258
Query: 457 SGCAVASRSAMSDAFKEENVPKFKNSWFCHDN-IVTCSRDGSAIIWIPRSRRSHGKVGRW 515
+ I + DG ++ R
Sbjct: 259 G----------------------------FNGLIASVGADGVLAVYEEVDGEWKVFAKRA 290
Query: 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW-SLDNRFVLA-AIMDCRICVWN 573
+N++ W L+ + +LA D + W+
Sbjct: 291 LCHGV-------------------------YEINVVKWLELNGKTILATGGDDGIVNFWS 325
Query: 574 AVDGS 578
+
Sbjct: 326 LEKAA 330
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 3e-32
Identities = 57/411 (13%), Positives = 108/411 (26%), Gaps = 125/411 (30%)
Query: 272 METAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD----GLPISVLRGHT 327
M + + S + ++ I S ++A+ S D I++ + + + H
Sbjct: 1 MASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHK 58
Query: 328 GAVTAIAFSP--RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385
A+ ++A+ P L + S D T IW
Sbjct: 59 KAIRSVAWRPHTS-----LLAAGSFDSTVSIWAKE-----------------ESADRTFE 96
Query: 386 NNGPSSSNGLQSHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV 443
+ + ++ H+ + A++ +G T S D +W ++S + + V
Sbjct: 97 MDLLAI---IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE-----TDESGEEYECISV 148
Query: 444 LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHD--NIVTCSRDGSAIIW 501
L H DV +V + + + S D + IW
Sbjct: 149 LQEHSQDVKHVIWH----------------------------PSEALLASSSYDDTVRIW 180
Query: 502 IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG----VNMIVWSLDN 557
+ G V +
Sbjct: 181 KDYDDD-------------------------------WECVAVLNGHEGTVWSSDFDKTE 209
Query: 558 RFV-LA-AIMDCRICVWNAVDGSLVHSLTGHSA-------SSYVLDVHPFNP--RIAMSA 606
L D + VW + V +V + IA S
Sbjct: 210 GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVA-WGFNGLIA-SV 267
Query: 607 GYDGRTIVWDIWEGTPIRIYEIGRFKLVDG-----KFSPDGTSIVLS--DD 650
G DG V++ +G + V +G +I+ + DD
Sbjct: 268 GADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDD 318
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 5e-25
Identities = 41/219 (18%), Positives = 65/219 (29%), Gaps = 48/219 (21%)
Query: 227 STMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET--AFCLASCRGH 284
++ + I L+ H V I+ S + + S D V+IW C+A GH
Sbjct: 137 DESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGH 196
Query: 285 EGDITDLAVSSN--NTLVASASNDFVIRVWRLPDGLPIS---------VLRGHTGAVTAI 333
EG + + S S+D +RVW+ + H V +
Sbjct: 197 EGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNV 256
Query: 334 AFSP--RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391
A+ + S DG +++ G+ V +
Sbjct: 257 AWGFNGL------IASVGADGVLAVYEEV-----------------DGEWKVF------A 287
Query: 392 SNGLQSHQ--ILCCA-YNANG-TVFVTGSSDTFARVWSA 426
L I NG T+ TG D WS
Sbjct: 288 KRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 3e-43
Identities = 63/274 (22%), Positives = 100/274 (36%), Gaps = 42/274 (15%)
Query: 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET---AFCLASCRGHEGDIT 289
+ + L GH + V + SG + T S D+ V +W ++ C++ H D+
Sbjct: 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154
Query: 290 DLAVSSNNTLVASASNDFVIRVWRLPDG--LPISVLRGHTGAVTAIAFSPRPSAIYQLLS 347
+ + L+ASAS D ++++R + + + L GH V ++AF P +L S
Sbjct: 155 HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ---RLAS 211
Query: 348 SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA 407
SDD T RIW YLP + + PS + +G S I A+
Sbjct: 212 CSDDRTVRIWRQ---------YLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ 262
Query: 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAM 467
T D RV+ +S + H DVN V ++
Sbjct: 263 LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN---------- 312
Query: 468 SDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW 501
PK + +CS DG W
Sbjct: 313 ---------PKEPGL------LASCSDDGEVAFW 331
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 158 bits (403), Expect = 2e-42
Identities = 64/419 (15%), Positives = 123/419 (29%), Gaps = 110/419 (26%)
Query: 236 IKKLRGHRDA-VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLAS---CRGHEGDITDL 291
+ ++ H D+ + ++ +G + + DR ++IW E + GH+ + +
Sbjct: 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKV 67
Query: 292 AVSSNNTLVASASNDFVIRVWRLPDGLP--ISVLRGHTGAVTAIAFSP--RPSAIYQLLS 347
A S +ASAS D +W+ ++ L GH V ++A++P L +
Sbjct: 68 AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-----LLAT 122
Query: 348 SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAY 405
S D + +W+ + L SH + +
Sbjct: 123 CSRDKSVWVWEVD-----------------EEDE-------YECVSVLNSHTQDVKHVVW 158
Query: 406 NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465
+ + + + S D +++ + + + L GHE+ V + F
Sbjct: 159 HPSQELLASASYDDTVKLYRE------EEDDWVC-CATLEGHESTVWSLAFD-------- 203
Query: 466 AMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523
+ +CS D + IW +
Sbjct: 204 --------------------PSGQRLASCSDDRTVRIW------------------RQYL 225
Query: 524 PPPPLPPQPPRGGPRQRLLPTPRG-----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGS 578
P P + + T G + I W + A D I V+ S
Sbjct: 226 PGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285
Query: 579 ---------LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTI-VWDIWEGTPIRIYE 627
H HS + +P P + S DG + W + +
Sbjct: 286 DPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG-EVAFWKYQRPEGLHHHH 343
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 8e-39
Identities = 54/371 (14%), Positives = 103/371 (27%), Gaps = 105/371 (28%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET--AFCLASCRGHEGDITDLAVSSN 296
GH+ V + G ++ + S D IW C+ + GHE ++ +A + +
Sbjct: 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS 116
Query: 297 NTLVASASNDFVIRVWRLPDGLP---ISVLRGHTGAVTAIAFSP--RPSAIYQLLSSSDD 351
L+A+ S D + VW + + +SVL HT V + + P L S+S D
Sbjct: 117 GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-----LLASASYD 171
Query: 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANG 409
T +++ L+ H+ + A++ +G
Sbjct: 172 DTVKLYREE-----------------EDD--------WVCCATLEGHESTVWSLAFDPSG 206
Query: 410 TVFVTGSSDTFARVWSACKSSVEDSEQPI------HELDVLSG-HENDVNYVQFSGCAVA 462
+ S D R+W E + LSG H + + +
Sbjct: 207 QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC----- 261
Query: 463 SRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYH 520
+ T D + ++
Sbjct: 262 -----------------------QLTGALATACGDDAIRVFQEDPN-------------- 284
Query: 521 LKVPPPPLPPQPPRGGPRQRLLPTPRG----VNMIVWS-LDNRFVLAAIMDCRICVWNAV 575
P+ + VN + W+ + + + D + W
Sbjct: 285 ----------SDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334
Query: 576 DGSLVHSLTGH 586
+H H
Sbjct: 335 RPEGLHHHHHH 345
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 4e-29
Identities = 42/236 (17%), Positives = 73/236 (30%), Gaps = 47/236 (19%)
Query: 231 QKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET--AFCLASCRGHEGDI 288
+ + + L H V ++ S + + S D VK++ E C A+ GHE +
Sbjct: 138 DEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTV 197
Query: 289 TDLAVSSNNTLVASASNDFVIRVWRL---------------PDGLPISVLRG-HTGAVTA 332
LA + +AS S+D +R+WR P I L G H+ +
Sbjct: 198 WSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYD 257
Query: 333 IAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392
IA+ L ++ D R++ + +
Sbjct: 258 IAWCQLTG---ALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQA------------- 301
Query: 393 NGLQSHQILCCAYN-ANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGH 447
S + C A+N + + S D W + +H H
Sbjct: 302 ---HSQDVNCVAWNPKEPGLLASCSDDGEVAFWKY------QRPEGLH---HHHHH 345
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 5e-22
Identities = 51/362 (14%), Positives = 90/362 (24%), Gaps = 130/362 (35%)
Query: 317 GLPISVLRGHT-GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPD 375
+ + + H +A++P + L S D RIW
Sbjct: 5 LVLLGRVPAHPDSRCWFLAWNPAGT---LLASCGGDRRIRIWGTE--------------- 46
Query: 376 AITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVED 433
S + HQ + A++ G + S D +W
Sbjct: 47 --GDSW-------ICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK-----KNQ 92
Query: 434 SEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVT 491
+ + L GHEN+V V ++ + T
Sbjct: 93 DDFEC--VTTLEGHENEVKSVAWA----------------------------PSGNLLAT 122
Query: 492 CSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG---- 547
CSRD S +W +
Sbjct: 123 CSRDKSVWVW------------------------------EVDEEDEYECVSVLNSHTQD 152
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDG--SLVHSLTGHSASSYVLDVHPFNP---RI 602
V +VW + +A D + ++ + +L GH S V + F+P R+
Sbjct: 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLA-FDPSGQRL 209
Query: 603 AMSAGYDGRTI-VWDIWEGTPIRIYEIGRFKLVDGK-----------------FSPDGTS 644
A S D RT+ +W + + K + +
Sbjct: 210 A-SCSDD-RTVRIWRQYLPGNEQGVACSGSDP-SWKCICTLSGFHSRTIYDIAWCQLTGA 266
Query: 645 IV 646
+
Sbjct: 267 LA 268
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 1e-06
Identities = 32/230 (13%), Positives = 61/230 (26%), Gaps = 78/230 (33%)
Query: 431 VEDSEQPIHELDVLSGHEND-VNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN- 488
++DS + + H + ++ ++
Sbjct: 1 MKDSLVLLGRV---PAHPDSRCWFLAWN----------------------------PAGT 29
Query: 489 -IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG 547
+ +C D IW K G R
Sbjct: 30 LLASCGGDRRIRIWGTEGDSWICK------------------SVLSEG--------HQRT 63
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGS--LVHSLTGHSASSYVLDVHPFNP---RI 602
V + WS ++ +A D C+W V +L GH + V V + P +
Sbjct: 64 VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGH--ENEVKSVA-WAPSGNLL 120
Query: 603 AMSAGYDGRTI-VWDIWEGTPIRIYEI-----GRFKLVDGKFSPDGTSIV 646
A + D +++ VW++ E + K V + P +
Sbjct: 121 A-TCSRD-KSVWVWEVDEEDEYECVSVLNSHTQDVKHV--VWHPSQELLA 166
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 4e-43
Identities = 75/369 (20%), Positives = 122/369 (33%), Gaps = 106/369 (28%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
+ + L GH +V C +D R +ITGS D V++W + T L + H + L
Sbjct: 164 ECKRILTGHTGSVLCLQYD--ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF 221
Query: 294 SSNNTLVASASNDFVIRVWRLPDGLPIS---VLRGHTGAVTAIAFSPRPSAIYQLLSSSD 350
NN ++ + S D I VW + I+ VL GH AV + F + ++S+S
Sbjct: 222 --NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-----YIVSASG 274
Query: 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH--QILCCAYNAN 408
D T ++W+ T + L H I C Y
Sbjct: 275 DRTIKVWNTS-----------------TCEFVRT----------LNGHKRGIACLQYR-- 305
Query: 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468
+ V+GSSD R+W + + VL GHE V ++F
Sbjct: 306 DRLVVSGSSDNTIRLWDI------ECGACLR---VLEGHEELVRCIRFDN---------- 346
Query: 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPL 528
IV+ + DG +W +
Sbjct: 347 ------------------KRIVSGAYDGKIKVWDLVAA---------------------- 366
Query: 529 PPQPPRGGPRQRLLPTPRGVNMIVWSL--DNRFVLAAIMDCRICVWNAVDGSLVHSLTGH 586
PR L T + V+ L D ++++ D I +W+ ++ +
Sbjct: 367 --LDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAQAEPPR 424
Query: 587 SASSYVLDV 595
S S +
Sbjct: 425 SPSRTYTYI 433
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 2e-41
Identities = 66/410 (16%), Positives = 130/410 (31%), Gaps = 121/410 (29%)
Query: 231 QKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITD 290
+Q I VYC +D + +++G D +KIW T C GH G +
Sbjct: 121 HSLQRIHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV-- 176
Query: 291 LAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD 350
L + + ++ + S+D +RVW + G ++ L H AV + F+ +++ S
Sbjct: 177 LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG-----MMVTCSK 231
Query: 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNAN 408
D + +WD + + L H+ + + +
Sbjct: 232 DRSIAVWDMA-----------------SPTD-------ITLRRVLVGHRAAVNVVDF--D 265
Query: 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468
V+ S D +VW+ + + + L+GH+ + +Q+
Sbjct: 266 DKYIVSASGDRTIKVWNT------STCEFVR---TLNGHKRGIACLQYRD---------- 306
Query: 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPL 528
+V+ S D + +W
Sbjct: 307 ------------------RLVVSGSSDNTIRLWDIECG---------------------- 326
Query: 529 PPQPPRGGPRQRLLPTPRGVNMIVWSL--DNRFVLAAIMDCRICVWNAVDGS-------- 578
L G +V + DN+ +++ D +I VW+ V
Sbjct: 327 -----------ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT 375
Query: 579 -LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE 627
+ +L H S V + F+ +S+ +D ++WD +
Sbjct: 376 LCLRTLVEH--SGRVFRLQ-FDEFQIVSSSHDDTILIWDFLNDPAAQAEP 422
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 1e-36
Identities = 48/229 (20%), Positives = 80/229 (34%), Gaps = 40/229 (17%)
Query: 231 QKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITD 290
+ + L GHR AV FD +++++ S DR +K+W+ T + + GH+ I
Sbjct: 244 TDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 301
Query: 291 LAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD 350
L LV S S+D IR+W + G + VL GH V I F + +++S +
Sbjct: 302 LQYRDR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK-----RIVSGAY 354
Query: 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNAN 408
DG ++WD + G L H + + +
Sbjct: 355 DGKIKVWDLV-----------------AALD-PRAPAGTLCLRTLVEHSGRVFRLQF--D 394
Query: 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS 457
V+ S D +W ++ Y S
Sbjct: 395 EFQIVSSSHDDTILIWDF------LNDPAAQ---AEPPRSPSRTYTYIS 434
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 2e-31
Identities = 68/372 (18%), Positives = 107/372 (28%), Gaps = 110/372 (29%)
Query: 264 DRLVKIWSMETAFCLASCRGHEGDITD-LAVSSNNTLVASASNDFVIRVWRLPDGLPISV 322
+ + W L + ++ + S D I++W +
Sbjct: 110 ETIESNWRCGR-HSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRI 168
Query: 323 LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSN 382
L GHTG+V + + R +++ S D T R+WD TG+
Sbjct: 169 LTGHTGSVLCLQYDER-----VIITGSSDSTVRVWDVN-----------------TGEML 206
Query: 383 VPSNNGPSSSNGLQSHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHE 440
L H +L +N + VT S D VW S I
Sbjct: 207 NT----------LIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDM------ASPTDITL 248
Query: 441 LDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAII 500
VL GH VN V F IV+ S D + +
Sbjct: 249 RRVLVGHRAAVNVVDFDD----------------------------KYIVSASGDRTIKV 280
Query: 501 WIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL--DNR 558
W + + T G + L +R
Sbjct: 281 WNTSTCE---------------------------------FVRTLNGHKRGIACLQYRDR 307
Query: 559 FVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618
V++ D I +W+ G+ + L GH V + F+ + +S YDG+ VWD+
Sbjct: 308 LVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIR-FDNKRIVSGAYDGKIKVWDLV 364
Query: 619 EGTPIRIYEIGR 630
R
Sbjct: 365 AALDPRAPAGTL 376
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 3e-29
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 18/140 (12%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDIT 289
+ ++ L GH+ + C + R V++GS D +++W +E CL GHE +
Sbjct: 283 TSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 340
Query: 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLP---------ISVLRGHTGAVTAIAFSPRPS 340
+ +N + S + D I+VW L L + L H+G V + F
Sbjct: 341 CIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF-- 396
Query: 341 AIYQLLSSSDDGTCRIWDAR 360
Q++SSS D T IWD
Sbjct: 397 ---QIVSSSHDDTILIWDFL 413
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 2e-09
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 2/70 (2%)
Query: 225 KPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGH 284
++ L H V+ FD +++ S D + IW +
Sbjct: 367 LDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWDFLNDPAAQAEPPR 424
Query: 285 EGDITDLAVS 294
T +S
Sbjct: 425 SPSRTYTYIS 434
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 4e-43
Identities = 63/405 (15%), Positives = 116/405 (28%), Gaps = 122/405 (30%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
L+GH V + + + S D V++WS + + +G + + S
Sbjct: 11 SATLKGHDQDVRDVVAVDDSKVA-SVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDS 69
Query: 296 NNTLVASASNDFVIRVWRLPD---GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG 352
L+ D +I L P+ L GH G V +++F ++S S D
Sbjct: 70 EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDG-----VVISGSWDK 124
Query: 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ---ILCCAYNANG 409
T ++W G LQ+H + +
Sbjct: 125 TAKVWK-------------------EGSLVYN----------LQAHNASVWDAKVVSFSE 155
Query: 410 TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSD 469
F+T S+D ++W +++ I H + V ++
Sbjct: 156 NKFLTASADKTIKLW--------QNDKVIKTF--SGIHNDVVRHLAVV------------ 193
Query: 470 AFKEENVPKFKNSWFCHDN-IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPL 528
D ++CS DG + +
Sbjct: 194 ----------------DDGHFISCSNDGLIKLVDMHTG---------------------- 215
Query: 529 PPQPPRGGPRQRLLPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT 584
+L T G V I + V + D + +W+ +GSL +T
Sbjct: 216 -----------DVLRTYEGHESFVYCIKLLPNGDIV-SCGEDRTVRIWSKENGSLKQVIT 263
Query: 585 GHSASSYVLDVHPFNPRIAMSAGYDGRTI-VWDIWEGTPIRIYEI 628
+ S + +D N I D + ++ + EI
Sbjct: 264 LPAISIWSVDCMS-NGDII-VGSSDN-LVRIFSQEKSRWASEDEI 305
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 2e-35
Identities = 43/222 (19%), Positives = 75/222 (33%), Gaps = 46/222 (20%)
Query: 234 QNIKKLRGHRDAVYC-AIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRG-HEGDITDL 291
+ L+ H +V+ + S +T S D+ +K+W + + + G H + L
Sbjct: 133 SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW--QNDKVIKTFSGIHNDVVRHL 190
Query: 292 AVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD 351
AV + + S SND +I++ + G + GH V I P ++S +D
Sbjct: 191 AVVDDGHFI-SCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG----DIVSCGED 245
Query: 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANG 409
T RIW G + I +NG
Sbjct: 246 RTVRIWSKE-----------------NGSLKQV----------ITLPAISIWSVDCMSNG 278
Query: 410 TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDV 451
+ + GSSD R++S + + D + G
Sbjct: 279 DI-IVGSSDNLVRIFSQ------EKSRWAS-EDEIKGELRSG 312
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 3e-33
Identities = 63/388 (16%), Positives = 118/388 (30%), Gaps = 125/388 (32%)
Query: 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFS 336
A+ +GH+ D+ D+ + +++ VAS S D +R+W D +V+ G + ++ +
Sbjct: 10 LSATLKGHDQDVRDVV-AVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYD 68
Query: 337 PRPSAIYQLLSSSDDGTCR---IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393
+ LL D ++
Sbjct: 69 S-EKEL--LLFGGKDTMINGVPLFATS-----------------GEDPLYT--------- 99
Query: 394 GLQSHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDV 451
L HQ + ++ V ++GS D A+VW ++ L H V
Sbjct: 100 -LIGHQGNVCSLSFQ--DGVVISGSWDKTAKVW--------KEGSLVY---NLQAHNASV 145
Query: 452 NYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGK 511
+ V+ F + +T S D + +W +
Sbjct: 146 WDAKV----VS---------------------FSENKFLTASADKTIKLW---------Q 171
Query: 512 VGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG-----VNMIVWSLDNRFVLAAIMD 566
+++ T G V + D F+ + D
Sbjct: 172 ND--------------------------KVIKTFSGIHNDVVRHLAVVDDGHFISCS-ND 204
Query: 567 CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP--RIAMSAGYDGRTI-VWDIWEGTPI 623
I + + G ++ + GH S+V + P I S G D RT+ +W G+
Sbjct: 205 GLIKLVDMHTGDVLRTYEGH--ESFVYCIK-LLPNGDIV-SCGED-RTVRIWSKENGSLK 259
Query: 624 RIYEIGRFKLVDG-KFSPDGTSIVLSDD 650
++ + +G IV S D
Sbjct: 260 QVIT-LPAISIWSVDCMSNGDIIVGSSD 286
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 5e-33
Identities = 47/365 (12%), Positives = 108/365 (29%), Gaps = 112/365 (30%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVK---IWSMETAFCLASCRGHEGDITD 290
+ + + +D ++ G D ++ +++ L + GH+G++
Sbjct: 50 WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCS 109
Query: 291 LAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAV---TAIAFSPRPSAIYQLLS 347
L+ +V S S D +VW+ +G + L+ H +V ++FS + L+
Sbjct: 110 LSFQDG--VVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSEN-----KFLT 160
Query: 348 SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA 407
+S D T ++W + G+ + + A
Sbjct: 161 ASADKTIKLWQNDKVIKTFS--------------------------GIHNDVVRHLAVVD 194
Query: 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAM 467
+G F++ S+D ++ + + GHE+ V ++
Sbjct: 195 DGH-FISCSNDGLIKLVDM------HTGDVLRT---YEGHESFVYCIKLL---------- 234
Query: 468 SDAFKEENVPKFKNSWFCHDN-IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPP 526
+ IV+C D + IW + G +
Sbjct: 235 ------------------PNGDIVSCGEDRTVRIWSKEN----GSLK------------- 259
Query: 527 PLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHS--LT 584
Q P + + + ++ + D + +++ +
Sbjct: 260 ----QVITL-------PA-ISIWSVDCMSNGDIIVGS-SDNLVRIFSQEKSRWASEDEIK 306
Query: 585 GHSAS 589
G S
Sbjct: 307 GELRS 311
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 4e-08
Identities = 35/229 (15%), Positives = 62/229 (27%), Gaps = 73/229 (31%)
Query: 441 LDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN-IVTCSRDGSAI 499
L GH+ DV V D+ + + SRDG+
Sbjct: 11 SATLKGHDQDVRDVVAV----------------------------DDSKVASVSRDGTVR 42
Query: 500 IWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRF 559
+W +G G +N + + +
Sbjct: 43 LWSKDD----QWLG-----------------TVVYTGQG--------FLNSVCYDSEKEL 73
Query: 560 VLAAIMDCRI---CVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTI-VW 615
+L D I ++ +++L GH V + F + +S +D +T VW
Sbjct: 74 LLFGGKDTMINGVPLFATSGEDPLYTLIGH--QGNVCSLS-FQDGVVISGSWD-KTAKVW 129
Query: 616 DIWEGTPIRIYEIGRFKLVDGK--FSPDGTSIVL-SDDVGQIYLLNTGQ 661
G+ + + V S + S D I L +
Sbjct: 130 KE--GSLVYNLQ-AHNASVWDAKVVSFSENKFLTASAD-KTIKLWQNDK 174
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 46/285 (16%), Positives = 84/285 (29%), Gaps = 100/285 (35%)
Query: 395 LQSHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVN 452
L+ H + + V + S D R+WS D + V+ + +N
Sbjct: 14 LKGHDQDVRDVVAVDDSKV-ASVSRDGTVRLWSK------DDQWLGT---VVYTGQGFLN 63
Query: 453 YVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDG---SAIIWIPRSRR 507
+V + + ++ +D ++
Sbjct: 64 -------SVC---------------------YDSEKELLLFGGKDTMINGVPLFATSG-- 93
Query: 508 SHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL---DNRFVLAAI 564
+ L T G V SL D + +
Sbjct: 94 -------------------------------EDPLYTLIGHQGNVCSLSFQDGVVISGS- 121
Query: 565 MDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTI-VWDIWEG 620
D VW +GSLV++L H+AS V D + + +A D +TI +W
Sbjct: 122 WDKTAKVWK--EGSLVYNLQAHNAS--VWDAKVVSFSENKFL-TASAD-KTIKLWQN--D 173
Query: 621 TPIRIYEIGRFKLVDG-KFSPDGTSIVLS---DDVGQIYLLNTGQ 661
I+ + +V DG +S D + ++ ++TG
Sbjct: 174 KVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGD 216
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 4e-42
Identities = 75/440 (17%), Positives = 143/440 (32%), Gaps = 127/440 (28%)
Query: 221 YAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLAS 280
Y + P+ + + K H V C F G ++ TG + +++ + +A
Sbjct: 42 YILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNK-TTQVYRVSDGSLVAR 100
Query: 281 CRGH------------------EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISV 322
+ I + S + +A+ + D +IR+W + + + +
Sbjct: 101 LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI 160
Query: 323 LRGHTGAVTAIAFSP--RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGK 380
L+GH + ++ + P +L+S S D T RIWD R TG+
Sbjct: 161 LQGHEQDIYSLDYFPSGD-----KLVSGSGDRTVRIWDLR-----------------TGQ 198
Query: 381 SNVPSNNGPSSSNGLQSHQ-ILCCAY-NANGTVFVTGSSDTFARVWSACKSSVEDSEQPI 438
++ L + A +G GS D RVW + ++ +
Sbjct: 199 CSLT----------LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS------ETGFLV 242
Query: 439 HELDV----LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHD--NIVTC 492
LD +GH++ V V F+ D ++V+
Sbjct: 243 ERLDSENESGTGHKDSVYSVVFT----------------------------RDGQSVVSG 274
Query: 493 SRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG----V 548
S D S +W +L+ + P G T G V
Sbjct: 275 SLDRSVKLW------------------NLQNANNKSDSKTPNSG---TCEVTYIGHKDFV 313
Query: 549 NMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSAS------SYVLDVHPFNPRI 602
+ + ++ ++L+ D + W+ G+ + L GH S + + P
Sbjct: 314 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 373
Query: 603 AMSAGYDGRTIVWDIWEGTP 622
A + D + +W + P
Sbjct: 374 A-TGSGDCKARIWKYKKIAP 392
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 1e-30
Identities = 58/402 (14%), Positives = 113/402 (28%), Gaps = 124/402 (30%)
Query: 282 RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD-------GLPISVLRGHTGAVTAIA 334
H I + ++ V A + L + + + HT V +
Sbjct: 12 ANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVK 71
Query: 335 FSP--RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392
FS L + + T +++ ++ S + ++
Sbjct: 72 FSNDGE-----YLATGCNK-TTQVYRVSDGS---------LVARLSDDSAANKDPENLNT 116
Query: 393 NGLQSHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEND 450
+ S I ++ +G TG+ D R+W ++ + + +L GHE D
Sbjct: 117 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI------ENRKIVM---ILQGHEQD 167
Query: 451 VNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRS 508
+ + + +V+ S D + IW R+
Sbjct: 168 IYSLDYF----------------------------PSGDKLVSGSGDRTVRIWDLRT--- 196
Query: 509 HGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS-LDNRFVLAAIMDC 567
G L GV + S D +++ A +D
Sbjct: 197 ---------------------------GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDR 229
Query: 568 RICVWNAVDGSLVHSL-------TGHSASSYVLDVHPFNP---RIAMSAGYDGRTI-VWD 616
+ VW++ G LV L TGH S V V F + S D R++ +W+
Sbjct: 230 AVRVWDSETGFLVERLDSENESGTGHKDS--VYSV-VFTRDGQSVV-SGSLD-RSVKLWN 284
Query: 617 IWEGTPIRIYEIGRFKLVDGK------------FSPDGTSIV 646
+ + + + + I+
Sbjct: 285 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 326
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 3e-18
Identities = 45/359 (12%), Positives = 90/359 (25%), Gaps = 122/359 (33%)
Query: 318 LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAI 377
+P + H+ + + + T + +Y P P
Sbjct: 6 VPYNQRANHSKPIPPFLLDLDSQ---SVPDALKKQTNDYYI---------LYNPALPRE- 52
Query: 378 TGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGTVFVTGSSDTFARVWSA----CKS-- 429
H + C ++ +G TG + T +V+ +
Sbjct: 53 IDVELHK----------SLDHTSVVCCVKFSNDGEYLATGCNKT-TQVYRVSDGSLVARL 101
Query: 430 ---SVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCH 486
S + + + + V FS
Sbjct: 102 SDDSAANKDPENLNTSSSPSSDLYIRSVCFS----------------------------P 133
Query: 487 DN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPT 544
D + T + D IW +R+ ++
Sbjct: 134 DGKFLATGAEDRLIRIWDIENRK---------------------------------IVMI 160
Query: 545 PRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP 600
+G + + + +++ D + +W+ G +L+ V V +P
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG---VTTVA-VSP 216
Query: 601 ----RIAMSAGYDGRTI-VWDIWEGTPIRIYEIGRFKLVDG--------KFSPDGTSIV 646
IA + D R + VWD G + + G F+ DG S+V
Sbjct: 217 GDGKYIA-AGSLD-RAVRVWDSETGFLVERLDSENESGT-GHKDSVYSVVFTRDGQSVV 272
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 5e-06
Identities = 35/235 (14%), Positives = 67/235 (28%), Gaps = 78/235 (33%)
Query: 435 EQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTC 492
+ + + + H + D+ +
Sbjct: 2 DHYLVPYNQRANHSKPIPPFLLD----------------------------LDSQSVPDA 33
Query: 493 SRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIV 552
+ + +I + + R + L V +
Sbjct: 34 LKKQTNDYYI----LYNPALPREI------------------DVELHKSLDHTSVVCCVK 71
Query: 553 WSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASS----------------YVLDVH 596
+S D + LA + V+ DGSLV L+ SA++ Y+ V
Sbjct: 72 FSNDGEY-LATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC 130
Query: 597 PFNP---RIAMSAGYDGRTI-VWDIWEGTPIRIYEIGRFKLVDG-KFSPDGTSIV 646
F+P +A + D R I +WDI + I + G + + + P G +V
Sbjct: 131 -FSPDGKFLA-TGAED-RLIRIWDIENRKIVMILQ-GHEQDIYSLDYFPSGDKLV 181
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 1e-41
Identities = 59/426 (13%), Positives = 121/426 (28%), Gaps = 124/426 (29%)
Query: 239 LRGHRDAVYCAIFD----RSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVS 294
H ++ F+ V V ++ + + + + D
Sbjct: 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFY 73
Query: 295 S---------NNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQL 345
+ ++ L+A A + +IR+ I GH A+ + F PR + L
Sbjct: 74 TCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNL--L 131
Query: 346 LSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCC 403
LS S D R+W+ + T + G++ H+ +L
Sbjct: 132 LSVSKDHALRLWNIQ-----------------TDTL-------VAIFGGVEGHRDEVLSA 167
Query: 404 AYNANGTVFVTGSSDTFARVWSA----CKSSVEDSE-------------QPIHELDV--L 444
Y+ G ++ D ++W +++++S Q IH D
Sbjct: 168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227
Query: 445 SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPR 504
H N V+ V++ G D I++ S + + + W P
Sbjct: 228 DIHRNYVDCVRWLG----------------------------DLILSKSCENAIVCWKPG 259
Query: 505 SRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL------DNR 558
+ +L +W + +
Sbjct: 260 KMEDDIDKIK-------------------PSESNVTILGRFDYSQCDIWYMRFSMDFWQK 300
Query: 559 FVLAAIMDCRICVWNAVDG----SLVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGR 611
+ ++ VW+ + +LT H + + F+ + + D
Sbjct: 301 MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTS-FSRDSSILI-AVCDDA- 357
Query: 612 TI-VWD 616
+I WD
Sbjct: 358 SIWRWD 363
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-29
Identities = 45/363 (12%), Positives = 98/363 (26%), Gaps = 116/363 (31%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIF---DRSGRFVITGSDDRLVKIWSMETAFCLASC---RG 283
MQ IK GH +A+ F D +++ S D +++W+++T +A G
Sbjct: 102 PITMQCIKHYVGHGNAINELKFHPRD--PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 159
Query: 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIY 343
H ++ + S D +++WR+ ++ ++ ++P +
Sbjct: 160 HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY------DYNPNKTNR- 212
Query: 344 QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCC 403
D T + + + C
Sbjct: 213 ----PFISQKIHFPDFS-----------------TRD--------------IHRNYVDCV 237
Query: 404 AYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV-----LSGHENDVNYVQFSG 458
+ G + ++ S + W K + + E +V + D+ Y++FS
Sbjct: 238 RW--LGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS- 294
Query: 459 CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRA 518
F + ++ G +W
Sbjct: 295 ------------------MDFWQKM-----LALGNQVGKLYVWDLEV------------- 318
Query: 519 YHLKVPPPPLPPQPPRGGPRQRLLPTPRG------VNMIVWSLDNRFVLAAIMDCRICVW 572
P + T + +S D+ ++A D I W
Sbjct: 319 ----------------EDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRW 362
Query: 573 NAV 575
+ +
Sbjct: 363 DRL 365
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 4e-20
Identities = 41/394 (10%), Positives = 99/394 (25%), Gaps = 138/394 (35%)
Query: 321 SVLRGHTGAVTAIAFSPR-PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITG 379
S+ H + + F+ + ++ +++ +
Sbjct: 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECH-----------------SQ 54
Query: 380 KSNVPSNNGPSSSNGLQSHQILCCAY----NANGTVFVTGSSDTFARVWSACKSSVEDSE 435
+ + CA+ N + + S R+ + +
Sbjct: 55 GE-IRLLQSY--VDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINP------ITM 105
Query: 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD 495
Q I GH N +N ++F P ++ +++ S+D
Sbjct: 106 QCIKH---YVGHGNAINELKFH-------------------P--RDPNL----LLSVSKD 137
Query: 496 GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG----VNMI 551
+ +W ++ + G V
Sbjct: 138 HALRLWNIQT------------------------------DTLVAIFGGVEGHRDEVLSA 167
Query: 552 VWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASS--------------------- 590
+ L +++ MD + +W +++++ +
Sbjct: 168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227
Query: 591 -----YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE---------IGRFKLVDG 636
YV V + + +S + + W + +GRF
Sbjct: 228 DIHRNYVDCVR-WLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC 286
Query: 637 -----KFSPD--GTSIVLSDDVGQIYL--LNTGQ 661
+FS D + L + VG++Y+ L
Sbjct: 287 DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 3e-11
Identities = 34/288 (11%), Positives = 74/288 (25%), Gaps = 98/288 (34%)
Query: 397 SHQILCCAYNANG----TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVN 452
+ + +N + + ++ S+ I +L + +
Sbjct: 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYEC------HSQGEIR---LLQSYVDADA 68
Query: 453 YVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN------IVTCSRDGSAIIWIPRSR 506
F CA + +D+ + G I P +
Sbjct: 69 DENFYTCA-----------------------WTYDSNTSHPLLAVAGSRGIIRIINPITM 105
Query: 507 RSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG----VNMIVWS-LDNRFVL 561
+ + G +N + + D +L
Sbjct: 106 Q---------------------------------CIKHYVGHGNAINELKFHPRDPNLLL 132
Query: 562 AAIMDCRICVWNAVDGSLVH---SLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTI-V 614
+ D + +WN +LV + GH VL ++ +I S G D ++ +
Sbjct: 133 SVSKDHALRLWNIQTDTLVAIFGGVEGHRDE--VLSAD-YDLLGEKIM-SCGMD-HSLKL 187
Query: 615 WDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662
W I + + D ++P+ T+ +T
Sbjct: 188 WRINSKRMMNAIKES----YD--YNPNKTNRPFISQKIHFPDFSTRDI 229
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 2e-40
Identities = 53/444 (11%), Positives = 119/444 (26%), Gaps = 125/444 (28%)
Query: 238 KLRGHRDAVY-CAIFDRSGRFVITGSDDRLVKIWSMETAFC------------------- 277
K D + + G + + ++ +
Sbjct: 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFA 99
Query: 278 -LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFS 336
AS +T LA S + + + + +R+W G ++VL H + ++ ++
Sbjct: 100 LSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWN 158
Query: 337 P--RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394
++S + +W+ + + + + N S +G
Sbjct: 159 KDGT-----HIISMDVENVTILWNVISGT------VMQHFELKETGGS-SINAENHSGDG 206
Query: 395 LQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV 454
+ + + FV V+ + P L GH ++ +
Sbjct: 207 ---SLGVDVEWVDDDK-FVIPGPKGAIFVYQI------TEKTPTG---KLIGHHGPISVL 253
Query: 455 QFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKV 512
+F+ N +++ S DG+ IW +
Sbjct: 254 EFN----------------------------DTNKLLLSASDDGTLRIWHGGNG------ 279
Query: 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG----VNMIVWSLDNRFVLAAIMDCR 568
G + W D++ V++ MD
Sbjct: 280 ---------------------------NSQNCFYGHSQSIVSASWVGDDK-VISCSMDGS 311
Query: 569 ICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTIVWDIWEGTPI-R 624
+ +W+ +L+ + + + A A DG+ V+D+ + R
Sbjct: 312 VRLWSLKQNTLLALSIVD--GVPIFAGR-ISQDGQKYA-VAFMDGQVNVYDLKKLNSKSR 367
Query: 625 IYEIGRFKLVDGKFSPDGTSIVLS 648
R +++ P S S
Sbjct: 368 SLYGNRDGILNPLPIPLYASYQSS 391
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 1e-38
Identities = 53/417 (12%), Positives = 101/417 (24%), Gaps = 118/417 (28%)
Query: 231 QKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITD 290
+ V C + G ++TG ++ +++W+ A L H I
Sbjct: 96 HPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGA-LLNVLNFHRAPIVS 154
Query: 291 LAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTG---AVTAIAFSPRPSAIY---- 343
+ + + T + S + V +W + G + ++ A S S
Sbjct: 155 VKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEW 214
Query: 344 ----QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399
+ + G ++ L H
Sbjct: 215 VDDDKFVIPGPKGAIFVYQIT-----------------EKTPTGK----------LIGHH 247
Query: 400 --ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS 457
I +N + ++ S D R+W + + GH + +
Sbjct: 248 GPISVLEFNDTNKLLLSASDDGTLRIWHG------GNGNSQN---CFYGHSQSIVSASWV 298
Query: 458 GCAVASRSAMSDAFKEENVPKFKNSWFCHDN-IVTCSRDGSAIIWIPRSRRSHGKVGRWT 516
D+ +++CS DGS +W +
Sbjct: 299 ----------------------------GDDKVISCSMDGSVRLWSLKQN---------- 320
Query: 517 RAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG----VNMIVWSLDNRFVLAAIMDCRICVW 572
LL + S D + A MD ++ V+
Sbjct: 321 -----------------------TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVY 357
Query: 573 NAVDG-SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDG-RTIVWDIWEGTPIRIYE 627
+ S SL G+ P S D + W+ Y
Sbjct: 358 DLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYS 414
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 1e-37
Identities = 54/446 (12%), Positives = 133/446 (29%), Gaps = 129/446 (28%)
Query: 256 RFVITGSDDRLVKIWSMETAFC-LASCRGHEGDITDLAVSSNN-TLVASASNDFVIRVWR 313
D + F + +I + + +++A + V R+ R
Sbjct: 15 ERETQEDDTNSIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLAR 74
Query: 314 LPDGLPISV--------------------LRGHTGAVTAIAFSP--RPSAIYQLLSSSDD 351
+ + T VT +A+S +++ ++
Sbjct: 75 IVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN-----SIVTGVEN 129
Query: 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANG 409
G R+W+ TG L H+ I+ +N +G
Sbjct: 130 GELRLWNK------------------TGALLNV----------LNFHRAPIVSVKWNKDG 161
Query: 410 TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSD 469
T ++ + +W+ S + ++ + +N SG +
Sbjct: 162 THIISMDVENVTILWNV------ISGTVMQHFELKETGGSSINAENHSG---DGSLGVDV 212
Query: 470 AFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLP 529
+ +++ V G+ ++ +
Sbjct: 213 EWVDDD------------KFVIPGPKGAIFVYQITEKT---------------------- 238
Query: 530 PQPPRGGPRQRLLPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG 585
G ++++ ++ N+ +L+A D + +W+ +G+ + G
Sbjct: 239 -----------PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG 287
Query: 586 HSASSYVLDVHPFNP--RIAMSAGYDGRTI-VWDIWEGTPIRIYEIGRFKLVDGKFSPDG 642
H S ++ + ++ S DG ++ +W + + T + + + + G+ S DG
Sbjct: 288 H--SQSIVSAS-WVGDDKVI-SCSMDG-SVRLWSLKQNTLLALSIVDGVPIFAGRISQDG 342
Query: 643 TSIVL-SDDVGQIYL--LNTGQGESQ 665
+ D GQ+ + L +S+
Sbjct: 343 QKYAVAFMD-GQVNVYDLKKLNSKSR 367
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 5e-36
Identities = 49/385 (12%), Positives = 102/385 (26%), Gaps = 124/385 (32%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD------ 287
+ L HR + +++ G +I+ + + +W++ + + E
Sbjct: 140 ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA 199
Query: 288 ---------ITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP- 337
D+ ++ V I V+++ + P L GH G ++ + F+
Sbjct: 200 ENHSGDGSLGVDVEWVDDDKFVIP-GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT 258
Query: 338 -RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396
+ LLS+SDDGT RIW G S
Sbjct: 259 NK-----LLLSASDDGTLRIWHGG-----------------NGNSQNC----------FY 286
Query: 397 SHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV 454
H I+ ++ + V ++ S D R+WS + + +
Sbjct: 287 GHSQSIVSASWVGDDKV-ISCSMDGSVRLWSL------KQNTLLA---LSIVDGVPIFAG 336
Query: 455 QFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKV 512
+ S D DG ++ + S +
Sbjct: 337 RIS----------------------------QDGQKYAVAFMDGQVNVYDLKKLNSKSRS 368
Query: 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRIC-- 570
+ G+ + ++ + I
Sbjct: 369 LYG----N------------------------RDGILNPLPIPLYASYQSSQDNDYIFDL 400
Query: 571 VWNAVDGSLVHSLTGHSASSYVLDV 595
WN + + + S V+ +
Sbjct: 401 SWNCAGNKISVAYSLQEGS--VVAI 423
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 4e-31
Identities = 55/375 (14%), Positives = 108/375 (28%), Gaps = 80/375 (21%)
Query: 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAI 342
+ ++T +S+D V L + + ++P +I
Sbjct: 8 EDGASTVERETQEDDTNSIDSSDDLDGFVKILK-------EIVKLDNIVSSTWNPLDESI 60
Query: 343 YQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILC 402
L + R+ + + K +SS ++Q+ C
Sbjct: 61 --LAYGEKNSVARLARIVETDQEGK----KYWKLTIIAELRHPFALSASSGK-TTNQVTC 113
Query: 403 CAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVA 462
A++ +G VTG + R+W+ + ++ VL+ H + V+++
Sbjct: 114 LAWSHDGNSIVTGVENGELRLWNK-------TGALLN---VLNFHRAPIVSVKWN----- 158
Query: 463 SRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYH 520
D I++ + I+W S G V +
Sbjct: 159 -----------------------KDGTHIISMDVENVTILWNVIS----GTVMQHFELKE 191
Query: 521 LKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLV 580
G + W D++FV+ I V+ + +
Sbjct: 192 TGGSSINAENHSGDGSL----------GVDVEWVDDDKFVIPG-PKGAIFVYQITEKTPT 240
Query: 581 HSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTI-VWDIWEGTPIRIYEIGRFKLVDG 636
L GH + + FN + SA D T+ +W G + G + +
Sbjct: 241 GKLIGH--HGPISVLE-FNDTNKLLL-SASDD-GTLRIWHGGNGNSQNCFY-GHSQSIVS 294
Query: 637 -KFSPDGTSIVLSDD 650
+ D I S D
Sbjct: 295 ASWVGDDKVISCSMD 309
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 2e-17
Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 3/104 (2%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLA-SCRGHEGDITDLA 292
+ ++ + G+ D V ++ ++ + S G+ I +
Sbjct: 321 TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPL 380
Query: 293 VSSNN-TLVASASNDFVIRV-WRLPDGLPISVLRGHTGAVTAIA 334
+ +S ND++ + W G+V AI
Sbjct: 381 PIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 2e-11
Identities = 34/277 (12%), Positives = 76/277 (27%), Gaps = 70/277 (25%)
Query: 410 TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSD 469
V+ + +++ ++
Sbjct: 15 ERETQEDDTNSIDSSDDLDGFVKILK--------EIVKLDNIVSSTWN------------ 54
Query: 470 AFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPP 527
P D + ++ A + GK W ++ P
Sbjct: 55 -------P--------LDESILAYGEKNSVARLARIVETDQEGKKY-WKLTIIAELRHPF 98
Query: 528 LPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHS 587
T V + WS D ++ + + + +WN G+L++ L H
Sbjct: 99 ALSASSGK--------TTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGALLNVLNFH- 148
Query: 588 ASSYVLDVHPFNP---RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFK------------ 632
+ ++ V +N I S + TI+W++ GT ++ +E+
Sbjct: 149 -RAPIVSVK-WNKDGTHII-SMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGD 205
Query: 633 ---LVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666
VD ++ D ++ G I++ +
Sbjct: 206 GSLGVDVEWVDDDKFVIPGPK-GAIFVYQITEKTPTG 241
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 3e-40
Identities = 71/448 (15%), Positives = 138/448 (30%), Gaps = 87/448 (19%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF--CLASCRGHEGDITDL 291
+ H + ++ A+ D G+ + T S D+ +KI+ +E + + GHEG + +
Sbjct: 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV 61
Query: 292 AVS--SNNTLVASASNDFVIRVWRLPDG--LPISVLRGHTGAVTAIAFSPRPSAIYQLLS 347
+ T++AS S D + +W+ +G I+V H+ +V ++ ++P LL
Sbjct: 62 DWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL-LLV 120
Query: 348 SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA 407
+S DG + + + + + I + + S P+ +
Sbjct: 121 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH----------NGTK 170
Query: 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAM 467
FVTG +D ++W Q L GH + V V +S +
Sbjct: 171 ESRKFVTGGADNLVKIW-----KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY-- 223
Query: 468 SDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPP 527
+ + S+D + IIW + + K
Sbjct: 224 ---------------------LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF------- 255
Query: 528 LPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHS 587
P + WSL + + D ++ +W +L G
Sbjct: 256 -----------------PDVLWRASWSLSGNVLALSGGDNKVTLWKE-------NLEGKW 291
Query: 588 ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVL 647
+ + S G + +D I + +D
Sbjct: 292 EPAGEVHQGGGG-----SGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRFT 346
Query: 648 SD------DVGQIYLLNTGQGESQKDAK 669
+ G + L G+S K
Sbjct: 347 ASYTFAKFSTGSMLLTKDIVGKSGVSIK 374
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 1e-26
Identities = 38/249 (15%), Positives = 70/249 (28%), Gaps = 50/249 (20%)
Query: 232 KMQNIKKLRGHRDAVYCAIF--DRSGRFVITGSDDRLVKIWSMET--AFCLASCRGHEGD 287
+ I H +V + G ++ S D V + + H
Sbjct: 90 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 149
Query: 288 ITDLAVS-------------SNNTLVASASNDFVIRVWRLPDGLP----ISVLRGHTGAV 330
+ + + + + D ++++W+ S L GH+ V
Sbjct: 150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 209
Query: 331 TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPS 390
+A+SP L S S D TC IW D G
Sbjct: 210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQ---------------DNEQGPWK-------K 247
Query: 391 SSNGLQSH--QILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE 448
+ + + +++ +G V D +W K ++E +P +V G
Sbjct: 248 TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW---KENLEGKWEPA--GEVHQGGG 302
Query: 449 NDVNYVQFS 457
S
Sbjct: 303 GSGGGGATS 311
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 1e-16
Identities = 56/369 (15%), Positives = 102/369 (27%), Gaps = 127/369 (34%)
Query: 317 GLPISVLRGHTGAVTAIAFSPRPSAIY--QLLSSSDDGTCRIWDARYSQYSPRIYLPKPP 374
G + + H + Y +L + S D T +I++
Sbjct: 1 GSMVVIANAHNELIHDAVLDY-----YGKRLATCSSDKTIKIFEV--------------- 40
Query: 375 DAITGKSNVPSNNGPSSSNGLQSHQ--ILCCA--YNANGTVFVTGSSDTFARVWSACKSS 430
+ T K L H+ + + GT+ + S D +W
Sbjct: 41 EGETHKLIDT----------LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK----- 85
Query: 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIV 490
E++ + ++ V + H VN VQ++ P ++
Sbjct: 86 -EENGRWS-QIAVHAVHSASVNSVQWA-------------------PHEYGPL-----LL 119
Query: 491 TCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNM 550
S DG + + +G H GVN
Sbjct: 120 VASSDGKVSVV---EFKENGTTSPIIIDAH------------------------AIGVNS 152
Query: 551 IVWS-------------LDNRFVLAAIMDCRICVW----NAVDGSLVHSLTGHSASSYVL 593
W+ ++R + D + +W +A L +L GH S +V
Sbjct: 153 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--SDWVR 210
Query: 594 DVHPFNP------RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGK-----FSPDG 642
DV ++P +A S D I+W + + + +S G
Sbjct: 211 DV-AWSPTVLLRSYLA-SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG 268
Query: 643 TSIVL-SDD 650
+ L D
Sbjct: 269 NVLALSGGD 277
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 4e-16
Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 24/144 (16%)
Query: 225 KPSTMVQKMQNIKKLRGHRDAVYCAIF---DRSGRFVITGSDDRLVKIWSMETA-----F 276
K ++ Q L GH D V + ++ + S DR IW+ +
Sbjct: 188 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKK 247
Query: 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL-PDGLPISVLRGHTGAVTAIAF 335
L + + S + ++A + D + +W+ +G H G
Sbjct: 248 TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQGGGG---- 303
Query: 336 SPRPSAIYQLLSSSDDGTCRIWDA 359
S T + +D
Sbjct: 304 -----------SGGGGATSKEFDG 316
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 2e-13
Identities = 18/130 (13%), Positives = 31/130 (23%), Gaps = 15/130 (11%)
Query: 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLA 292
+ + K D ++ A + SG + D V +W G ++
Sbjct: 246 KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL-------EGKWEPAGEVH 298
Query: 293 VSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRP----SAIYQLLSS 348
S + + P I +L A +A Y
Sbjct: 299 QGG----GGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRFTASYTFAKF 354
Query: 349 SDDGTCRIWD 358
S D
Sbjct: 355 STGSMLLTKD 364
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 5e-40
Identities = 63/406 (15%), Positives = 124/406 (30%), Gaps = 104/406 (25%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF----CLASCRGHEGDITDLAVS 294
GH D V+ ++D GR V T S D+ +K++ ++ S R H+ I + +
Sbjct: 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA 66
Query: 295 --SNNTLVASASNDFVIRVWRLPDGLP---------ISVLRGHTGAVTAIAFSPRPSAIY 343
++ASAS D +++W + L G++ ++ F+P +
Sbjct: 67 SPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLK 126
Query: 344 QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--IL 401
L +DG R++DA + +S ++ S +H
Sbjct: 127 -LACLGNDGILRLYDA--------------LEPSDLRSWTLTSEMKVLSIPPANHLQSDF 171
Query: 402 CCAYN---ANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSG 458
C ++ + + + +D + L GH++ + + ++
Sbjct: 172 CLSWCPSRFSPEKLAVSALEQAIIYQ-----RGKDGKLH--VAAKLPGHKSLIRSISWA- 223
Query: 459 CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRA 518
P + + I T +DG I+ +
Sbjct: 224 ------------------P---SIGRWYQLIATGCKDGRIRIFKITEKL----------- 251
Query: 519 YHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCR----ICVWNA 574
P + NM S D D + +
Sbjct: 252 ------------SPLASE------ESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN 293
Query: 575 VDGSLVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTIVWDI 617
+ L+ H + V V +N ++ SAG DG+ +W
Sbjct: 294 LQVELLSEHDDH--NGEVWSV-SWNLTGTILS-SAGDDGKVRLWKA 335
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 2e-29
Identities = 40/268 (14%), Positives = 83/268 (30%), Gaps = 61/268 (22%)
Query: 225 KPSTMVQKMQNIKKLRGHRDAVYCAIF--DRSGRFVITGSDDRLVKIWSMETAFCLA--- 279
+ ++ + L + ++Y F G + +D +++++ L
Sbjct: 92 QEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWT 151
Query: 280 ----------SCRGHEGDITDLAVSSNN---TLVASASNDFVIRVWRLPDG--LPISVLR 324
H L+ + +A ++ + I R DG + L
Sbjct: 152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP 211
Query: 325 GHTGAVTAIAFSPRPSAIYQLL-SSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383
GH + +I+++P YQL+ + DG RI+ S +
Sbjct: 212 GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT-----------------EKLSPL 254
Query: 384 PSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFA----RVWSACKSSVEDSEQPIH 439
S ++SN +A+ + G SD+ + S +
Sbjct: 255 ASEESLTNSNMF--------DNSADVDMDAQGRSDSNTEEKAELQSN---------LQVE 297
Query: 440 ELDVLSGHENDVNYVQFS--GCAVASRS 465
L H +V V ++ G ++S
Sbjct: 298 LLSEHDDHNGEVWSVSWNLTGTILSSAG 325
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 3e-28
Identities = 53/394 (13%), Positives = 105/394 (26%), Gaps = 101/394 (25%)
Query: 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP----ISVLRGHTGAVTAIAFSPR 338
GH+ + D+ VA+ S+D I+V++L R H ++ AI ++
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS- 67
Query: 339 PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH 398
P + S+S D T ++W+ + L
Sbjct: 68 PEYGRIIASASYDKTVKLWEED-----------------PDQEECSGRRWNKLCT-LNDS 109
Query: 399 Q--ILCCAY--NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS----GHEND 450
+ + + G +D R++ A + S S E+ VLS H
Sbjct: 110 KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQS 169
Query: 451 VNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510
+ + P S F + + + + + I + +
Sbjct: 170 DFCLSWC-------------------P----SRFSPEKLAVSALEQAIIYQRGKDGK--- 203
Query: 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG----VNMIVWSLDNRFVLAAI-- 564
+ G + I W+ I
Sbjct: 204 ----------------------------LHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT 235
Query: 565 --MDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTI----VWDIW 618
D RI ++ + + +S + D A D T +
Sbjct: 236 GCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDA-QGRSDSNTEEKAELQSNL 294
Query: 619 EGTPIRIYEIGRFKLVDG-KFSPDGTSIVL-SDD 650
+ + ++ V ++ GT + DD
Sbjct: 295 QVELLSEHD-DHNGEVWSVSWNLTGTILSSAGDD 327
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 6e-24
Identities = 28/221 (12%), Positives = 64/221 (28%), Gaps = 43/221 (19%)
Query: 239 LRGHRDAVYCAIF---DRSGRFVITGSDDRLVKIWSMET--AFCLASCRGHEGDITDLAV 293
H + +C + S + + ++ + + A GH+ I ++
Sbjct: 163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISW 222
Query: 294 SSNNT----LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS 349
+ + L+A+ D IR++++ + L S L + F S
Sbjct: 223 APSIGRWYQLIATGCKDGRIRIFKITEKL--SPLASEESLTNSNMFDNSADVDMDAQGRS 280
Query: 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNA 407
D T + + + + H + ++N
Sbjct: 281 DSNTEEKAELQ--------------SNLQVELLSE----------HDDHNGEVWSVSWNL 316
Query: 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE 448
GT+ + D R+W A + V++ +
Sbjct: 317 TGTILSSAGDDGKVRLWKA------TYSNEFKCMSVITAQQ 351
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 19/144 (13%)
Query: 232 KMQNIKKLRGHRDAVYCAIF----DRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD 287
K+ KL GH+ + + R + + TG D ++I+ + L+ E
Sbjct: 203 KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE--KLSPLASEESL 260
Query: 288 ITDLAV--SSNNTLVASASND----FVIRVWRLPDGLPISVLRGHTGAVTAIAFSP--RP 339
S++ + A +D + +S H G V +++++
Sbjct: 261 TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGT- 319
Query: 340 SAIYQLLSSSDDGTCRIWDARYSQ 363
L S+ DDG R+W A YS
Sbjct: 320 ----ILSSAGDDGKVRLWKATYSN 339
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 4e-11
Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 6/99 (6%)
Query: 236 IKKLRGHRDAVYCAIFDRS--GRFVITGSDD----RLVKIWSMETAFCLASCRGHEGDIT 289
+ L +FD S G D ++ S L+ H G++
Sbjct: 251 LSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVW 310
Query: 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTG 328
++ + T+++SA +D +R+W+ + T
Sbjct: 311 SVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITA 349
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 8/59 (13%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA---FCLASCRGHE 285
+++ + + H V+ ++ +G + + DD V++W + C++ +
Sbjct: 293 NLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQQ 351
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 2e-39
Identities = 63/362 (17%), Positives = 123/362 (33%), Gaps = 78/362 (21%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF--CLASCRGHEGDITDLAV 293
+ H + ++ A+ D G+ + T S D+ +KI+ +E + + GHEG + +
Sbjct: 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 294 S--SNNTLVASASNDFVIRVWRLPDG--LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS 349
+ T++AS S D + +W+ +G I+V H+ +V ++ ++P LL +S
Sbjct: 62 AHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPM-LLVAS 120
Query: 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG 409
DG + + + + + I + + S P+ +
Sbjct: 121 SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH----------NGTKES 170
Query: 410 TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSD 469
FVTG +D ++W Q L GH + V V +S +
Sbjct: 171 RKFVTGGADNLVKIW-----KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY---- 221
Query: 470 AFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLP 529
+ + S+D + IIW
Sbjct: 222 -------------------MASVSQDRTCIIWT--------------------------- 235
Query: 530 PQPPRGGPRQRLLPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNA-VDGSLVHSLT 584
Q GP ++ L + WSL + + D ++ +W ++G +
Sbjct: 236 -QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGE 294
Query: 585 GH 586
H
Sbjct: 295 VH 296
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 7e-29
Identities = 38/255 (14%), Positives = 76/255 (29%), Gaps = 52/255 (20%)
Query: 234 QNIKKLRGHRDAVYCAIF--DRSGRFVITGSDDRLVKIWSMET--AFCLASCRGHEGDIT 289
+ I L GH V+ + + G + + S D V IW E +A H +
Sbjct: 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVN 103
Query: 290 DLAVSSNN--TLVASASNDFVIRVWRLPDGLPIS--VLRGHTGAVTAIAFSPRPSAIY-- 343
+ + + ++ AS+D + V + S ++ H V + +++P
Sbjct: 104 SVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163
Query: 344 --------QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL 395
+ ++ D +IW DA T L
Sbjct: 164 HNGTKESRKFVTGGADNLVKIWKYN-------------SDAQTYVLEST----------L 200
Query: 396 QSHQ--ILCCAY---NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEND 450
+ H + A+ + + S D +W+ + L +
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ----DNEQGPWKKTLLKEEKFPDV 256
Query: 451 VNYVQFS--GCAVAS 463
+ +S G +A
Sbjct: 257 LWRASWSLSGNVLAL 271
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-27
Identities = 35/240 (14%), Positives = 68/240 (28%), Gaps = 53/240 (22%)
Query: 232 KMQNIKKLRGHRDAVYCAIF--DRSGRFVITGSDDRLVKIWSMET--AFCLASCRGHEGD 287
+ I H +V + G ++ S D V + + H
Sbjct: 88 RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 147
Query: 288 ITDLAVS-------------SNNTLVASASNDFVIRVWRLPDGLP----ISVLRGHTGAV 330
+ + + + + D ++++W+ S L GH+ V
Sbjct: 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207
Query: 331 TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPS 390
+A+SP + S S D TC IW D G
Sbjct: 208 RDVAWSPTVLLRSYMASVSQDRTCIIWTQ---------------DNEQGPWK-------K 245
Query: 391 SSNGLQSH--QILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE 448
+ + + +++ +G V D +W K ++E +P H+
Sbjct: 246 TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW---KENLEGKWEP-----AGEVHQ 297
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 1e-24
Identities = 54/372 (14%), Positives = 98/372 (26%), Gaps = 99/372 (26%)
Query: 278 LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL--PDGLPISVLRGHTGAVTAIAF 335
+ H I D + +A+ S+D I+++ + I L GH G V + +
Sbjct: 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 336 SPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGK-SNVPSNNGPSSSNG 394
+ L S S DG IW G+ S + + S+S
Sbjct: 62 AHPKFGTI-LASCSYDGKVMIWKE-----------------ENGRWSQIAVHAVHSAS-- 101
Query: 395 LQSHQILCCAY--NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVN 452
+ + + G + + SSD V + ++ H VN
Sbjct: 102 -----VNSVQWAPHEYGPMLLVASSDGKVSVVEF------KENGTTSPI-IIDAHAIGVN 149
Query: 453 YVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKV 512
++ A+ + + K VT D IW S
Sbjct: 150 SASWA---PATIEEDGEHNGTKESRK----------FVTGGADNLVKIWKYNSDAQTYV- 195
Query: 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS-------LDNRFVLAAIM 565
L T G + V L ++ +
Sbjct: 196 ----------------------------LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ 227
Query: 566 DCRICVWNAVDGS-----LVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTIVWDI 617
D +W + + + ++ +A +G D + +W
Sbjct: 228 DRTCIIWTQDNEQGPWKKTLLKEEKF--PDVLWRAS-WSLSGNVLA-LSGGDNKVTLWKE 283
Query: 618 -WEGTPIRIYEI 628
EG E+
Sbjct: 284 NLEGKWEPAGEV 295
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 5e-17
Identities = 54/366 (14%), Positives = 101/366 (27%), Gaps = 127/366 (34%)
Query: 320 ISVLRGHTGAVTAIAFSPRPSAIY--QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAI 377
+ + H + Y ++ + S D T +I++ +
Sbjct: 2 VVIANAHNEMIHDAVMDY-----YGKRMATCSSDKTIKIFEV---------------EGE 41
Query: 378 TGKSNVPSNNGPSSSNGLQSHQ--ILCCA--YNANGTVFVTGSSDTFARVWSACKSSVED 433
T K L H+ + + GT+ + S D +W E+
Sbjct: 42 THKLIDT----------LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK------EE 85
Query: 434 SEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS 493
+ + ++ V + H VN VQ++ P ++ S
Sbjct: 86 NGRWS-QIAVHAVHSASVNSVQWA-------------------PHEYGPM-----LLVAS 120
Query: 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW 553
DG + + +G H GVN W
Sbjct: 121 SDGKVSVV---EFKENGTTSPIIIDAH------------------------AIGVNSASW 153
Query: 554 S-------------LDNRFVLAAIMDCRICVW----NAVDGSLVHSLTGHSASSYVLDVH 596
+ ++R + D + +W +A L +L GHS +V DV
Sbjct: 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS--DWVRDV- 210
Query: 597 PFNP------RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGK-----FSPDGTSI 645
++P +A S D I+W + + + +S G +
Sbjct: 211 AWSPTVLLRSYMA-SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL 269
Query: 646 VL-SDD 650
L D
Sbjct: 270 ALSGGD 275
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 2e-12
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 9/106 (8%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIF---DRSGRFVITGSDDRLVKIWSMETA-----FCLASC 281
Q L GH D V + ++ + S DR IW+ + L
Sbjct: 191 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKE 250
Query: 282 RGHEGDITDLAVSSNNTLVASASNDFVIRVWRL-PDGLPISVLRGH 326
+ + S + ++A + D + +W+ +G H
Sbjct: 251 EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVH 296
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 33/149 (22%)
Query: 541 LLPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGS--LVHSLTGHSASSYVLD 594
++ ++ V + + D I ++ + L+ +LTGH V
Sbjct: 1 MVVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGP--VWR 58
Query: 595 V----HPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDG--------KFSPDG 642
V F +A S YDG+ ++W G +I +++P
Sbjct: 59 VDWAHPKFGTILA-SCSYDGKVMIWKEENGRWSQIAVH------AVHSASVNSVQWAPHE 111
Query: 643 TSIVL---SDDVGQIYLLN--TGQGESQK 666
+L S D G++ ++ S
Sbjct: 112 YGPMLLVASSD-GKVSVVEFKENGTTSPI 139
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 4e-39
Identities = 51/454 (11%), Positives = 107/454 (23%), Gaps = 127/454 (27%)
Query: 240 RGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET--AFCLASCRGHEGDITDLAVSSNN 297
+ + C +++ + ++ V I+ + + H G +T + + ++
Sbjct: 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 64
Query: 298 TLVASASNDFVIRVWRLPDG--LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355
+ + D VW L P V+ A + ++P + S
Sbjct: 65 NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK---KFAVGSGSRVIS 121
Query: 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGTVFV 413
I N+ + + + +L ++ N +
Sbjct: 122 ICYFE-----------------QE------NDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158
Query: 414 TGSSDTFARVWSACKSSVEDSEQPIH---------ELDVLSGHENDVNYVQFS--GCAVA 462
GS D R++SA VE+ P + S V+ V FS G VA
Sbjct: 159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218
Query: 463 SRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLK 522
S D + +
Sbjct: 219 W----------------------------VSHDSTVCLADADK----------------- 233
Query: 523 VPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHS 582
L + + + ++ V A DC ++ + S
Sbjct: 234 ------------KMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLS 280
Query: 583 LTGHSASSYVLDVHPFNP-RIAMSAGYDGRTIV-WDIWEGTPIR------IYEIGRFKLV 634
G D + G + + +I
Sbjct: 281 FGGR--LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQI------ 332
Query: 635 DGKFSPDGTSIVL-----SDDVGQIYL--LNTGQ 661
G + D G + + + + +
Sbjct: 333 --SVLSGGKAKCSQFCTTGMD-GGMSIWDVRSLE 363
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 4e-34
Identities = 46/308 (14%), Positives = 76/308 (24%), Gaps = 87/308 (28%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET----AFCLASCRGHEGDITDLAVS 294
+ A C + + + GS R++ I E C + + L
Sbjct: 92 ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH 151
Query: 295 SNNTLVASASNDFVIRVW------------------RLPDGLPISVLRGHTGAVTAIAFS 336
N+ L+A+ S DF R++ ++P G + G V + FS
Sbjct: 152 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS 211
Query: 337 P--RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394
++ S D T + DA +
Sbjct: 212 ANGS-----RVAWVSHDSTVCLADAD-----------------KKMAVAT---------- 239
Query: 395 LQSHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVN 452
L S +L + ++ G +++ DS G +
Sbjct: 240 LASETLPLLAVTFITESSLVAAGHDCF-PVLFTY------DSAAGKL---SFGGRLDVPK 289
Query: 453 YVQFSGCAVASRSAMSD--AFKEENVPKFKNSWFCHDN-----------------IVTCS 493
G R D A E + H N T
Sbjct: 290 QSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTG 349
Query: 494 RDGSAIIW 501
DG IW
Sbjct: 350 MDGGMSIW 357
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 4e-34
Identities = 53/403 (13%), Positives = 107/403 (26%), Gaps = 101/403 (25%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF--CLASCRGHEGDIT 289
K + +L+ H V + ++T DR +W+++
Sbjct: 41 KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 100
Query: 290 DLAVSSNNTLVASASNDFVIRVWRLPDG----LPISVLRGHTGAVTAIAFSP--RPSAIY 343
+ + N A S VI + + + + V ++ + P
Sbjct: 101 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV----- 155
Query: 344 QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCC 403
L + S D CRI+ A + + + P S +P S+ +
Sbjct: 156 LLAAGSCDFKCRIFSAYIKE------VEERPAPTPWGSKMPFGELMFESSS-SCGWVHGV 208
Query: 404 AYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAV 461
++ANG+ S D+ + A D + + L+ + V F V
Sbjct: 209 CFSANGSRVAWVSHDSTVCLADA------DKKMAVA---TLASETLPLLAVTFITESSLV 259
Query: 462 ASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHL 521
A+ D +++ S G+ + L
Sbjct: 260 AAGH-----------------------------DCFPVLFTYDSAA-----GKLSFGGRL 285
Query: 522 KVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCR-ICVWNAVDGSLV 580
V +D + +A G+ +
Sbjct: 286 DV------------------------PKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 321
Query: 581 HSLTGHSASSYVLDV--HP----FNPRIAMSAGYDGRTIVWDI 617
+ H + V + + + G DG +WD+
Sbjct: 322 D--SLH--KNSVSQISVLSGGKAKCSQFC-TTGMDGGMSIWDV 359
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 1e-13
Identities = 35/281 (12%), Positives = 74/281 (26%), Gaps = 92/281 (32%)
Query: 395 LQSHQ-----ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN 449
+ H I C A+N + T ++ ++ + + ++ L H
Sbjct: 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEK------SGNKWV-QVHELKEHNG 53
Query: 450 DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRR 507
V V ++ D+ IVTC D +A +W
Sbjct: 54 QVTGVDWA----------------------------PDSNRIVTCGTDRNAYVW------ 79
Query: 508 SHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC 567
+ P +L R + W+ + +
Sbjct: 80 ---------------------TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR 118
Query: 568 RICVWNAVDGS----LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPI 623
I + + H ++ LD HP + +A + D + ++ +
Sbjct: 119 VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA-AGSCDFKCRIFSAYIKEVE 177
Query: 624 RIYEIGRF--KLVDGK----------------FSPDGTSIV 646
+ K+ G+ FS +G+ +
Sbjct: 178 ERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 2e-07
Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 7/89 (7%)
Query: 234 QNIKKLRGHRDAVYCAIFD-RSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLA 292
G D + + R D + S L S H+ ++ ++
Sbjct: 276 AGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS--LHKNSVSQIS 333
Query: 293 VSSNN----TLVASASNDFVIRVWRLPDG 317
V S + + D + +W +
Sbjct: 334 VLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 5e-39
Identities = 72/422 (17%), Positives = 129/422 (30%), Gaps = 129/422 (30%)
Query: 226 PSTMVQKMQNIKKLRGHRDAVYCAIF--DRSGRFVITGSDDRLVKIWSMETA-----FCL 278
S M ++M L+GH V +++ S D+ + +W +
Sbjct: 21 QSMMTEQMTLRGTLKGHNGWVTQIATTPQ-FPDMILSASRDKTIIMWKLTRDETNYGIPQ 79
Query: 279 ASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP- 337
+ RGH ++D+ +SS+ S S D +R+W L G GHT V ++AFS
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 338 -RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396
R Q++S S D T ++W+ K V +
Sbjct: 140 NR-----QIVSGSRDKTIKLWNT----------------LGVCKYTVQ----------DE 168
Query: 397 SHQ--ILCCAYNANGT--VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVN 452
SH + C ++ N + + V+ D +VW+ + + GH +N
Sbjct: 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL------ANCKLKT---NHIGHTGYLN 219
Query: 453 YVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHG 510
V S D + +DG A++W +
Sbjct: 220 TVTVS----------------------------PDGSLCASGGKDGQAMLWDLNEGK--- 248
Query: 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRIC 570
GG +N + +S + + L A I
Sbjct: 249 ------------------HLYTLDGG---------DIINALCFSPNRYW-LCAATGPSIK 280
Query: 571 VWNAVDGSLVHSLTGHSA-------SSYVLDVHPFNP---RIAMSAGYDGRTI-VWDIWE 619
+W+ +V L + ++ + + D + VW +
Sbjct: 281 IWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA-WSADGQTLF-AGYTDN-LVRVWQVTI 337
Query: 620 GT 621
GT
Sbjct: 338 GT 339
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 139 bits (354), Expect = 4e-36
Identities = 75/441 (17%), Positives = 136/441 (30%), Gaps = 139/441 (31%)
Query: 255 GRFVITGSDDRLVKIW----SMETAFCLASCRGHEGDITDLAVSSNN-TLVASASNDFVI 309
+G D ++ E + +GH G +T +A + ++ SAS D I
Sbjct: 4 HHHHSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTI 63
Query: 310 RVWRL-----PDGLPISVLRGHTGAVTAIAFSP--RPSAIYQLLSSSDDGTCRIWDARYS 362
+W+L G+P LRGH+ V+ + S + LS S DGT R+WD
Sbjct: 64 IMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ-----FALSGSWDGTLRLWDLT-- 116
Query: 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGTVFVTGSSDTF 420
TG + H +L A++++ V+GS D
Sbjct: 117 ---------------TGTTTRR----------FVGHTKDVLSVAFSSDNRQIVSGSRDKT 151
Query: 421 ARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFK 480
++W+ H V+ V+FS P
Sbjct: 152 IKLWNT------LGVCKY--TVQDESHSEWVSCVRFS-------------------PNSS 184
Query: 481 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540
N IV+C D +W + +
Sbjct: 185 NPI-----IVSCGWDKLVKVWNLANC---------------------------------K 206
Query: 541 LLPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVH 596
L G +N + S D + D + +W+ +G +++L G + +
Sbjct: 207 LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG---DIINALC 263
Query: 597 PFNP---RIAMSAGYDGRTI-VWDIWEGTPIR-IYEIGRFKLVDGK--------FSPDGT 643
F+P + A +I +WD+ + + + + +S DG
Sbjct: 264 -FSPNRYWLC--AATG-PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ 319
Query: 644 SIVL-SDDVGQIYL--LNTGQ 661
++ D + + + G
Sbjct: 320 TLFAGYTD-NLVRVWQVTIGT 339
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 72.5 bits (179), Expect = 2e-13
Identities = 42/258 (16%), Positives = 80/258 (31%), Gaps = 81/258 (31%)
Query: 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAM 467
+ +G ++ + + L GH V + +
Sbjct: 3 HHHHHSSGVDLGTENLYFQ-----SMMTEQMTLRGTLKGHNGWVTQIATT---------- 47
Query: 468 SDAFKEENVPKFKNSWFCHDN---IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVP 524
I++ SRD + I+W
Sbjct: 48 ------------------PQFPDMILSASRDKTIIMWKLTRD------------------ 71
Query: 525 PPPLPPQPPRGGPRQRLLPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLV 580
+ G P++ L RG V+ +V S D +F L+ D + +W+ G+
Sbjct: 72 ------ETNYGIPQRAL----RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT 121
Query: 581 HSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTI-VWDIWEGTPIRIYEIGRFKLVDG 636
GH + VL V F+ +I S D +TI +W+ + + + V
Sbjct: 122 RRFVGH--TKDVLSVA-FSSDNRQIV-SGSRD-KTIKLWNTLGVCKYTVQDESHSEWVSC 176
Query: 637 -KFSPDGTSIVL---SDD 650
+FSP+ ++ ++ D
Sbjct: 177 VRFSPNSSNPIIVSCGWD 194
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 3e-38
Identities = 66/373 (17%), Positives = 117/373 (31%), Gaps = 75/373 (20%)
Query: 229 MVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET--AFCLASCRGHEG 286
MV + + H D ++ A D G + T S DR VKI+ + +A RGHEG
Sbjct: 1 MVSVINTV--DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEG 58
Query: 287 DITDLAVSSNN--TLVASASNDFVIRVWRLPDG--LPISVLRGHTGAVTAIAFSPRPSAI 342
+ +A + ++AS S D + +WR +G GH +V ++ ++P +
Sbjct: 59 PVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGL 118
Query: 343 YQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSN-V---PSNNGPSSSNGLQSH 398
L S DG + + K +A T N V P+ S +
Sbjct: 119 I-LACGSSDGAISLLTYTGEGQWE---VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQ 174
Query: 399 QILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSG 458
+ F +G D ++W + + E L H + V V ++
Sbjct: 175 K------PNYIKRFASGGCDNLIKLWKE------EEDGQWKEEQKLEAHSDWVRDVAWA- 221
Query: 459 CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRA 518
P + I +CS+DG IW S+ +
Sbjct: 222 ------------------P---SIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPK-LLH 259
Query: 519 YHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS 578
V + WS+ + + D ++ +W
Sbjct: 260 KF------------------------NDVVWHVSWSITANILAVSGGDNKVTLWKESVDG 295
Query: 579 LVHSLTGHSASSY 591
++ +
Sbjct: 296 QWVCISDVNKGQG 308
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 4e-29
Identities = 32/251 (12%), Positives = 68/251 (27%), Gaps = 57/251 (22%)
Query: 232 KMQNIKKLRGHRDAVYCAIF--DRSGRFVITGSDDRLVKIWSMET--------------- 274
+ + GH +V + G + GS D + + +
Sbjct: 92 TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI 151
Query: 275 -----AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP---ISVLRGH 326
++ A G D + AS D +I++W+ + L H
Sbjct: 152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH 211
Query: 327 TGAVTAIAFSPRPSAIYQLL-SSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385
+ V +A++P + S S DG IW +
Sbjct: 212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD-----------------------DA 248
Query: 386 NNGPSSSNGLQSH--QILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV 443
++ S L + +++ + D +W E + +
Sbjct: 249 SSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK------ESVDGQWVCISD 302
Query: 444 LSGHENDVNYV 454
++ + V+
Sbjct: 303 VNKGQGSVSAS 313
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 5e-27
Identities = 56/356 (15%), Positives = 101/356 (28%), Gaps = 96/356 (26%)
Query: 282 RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG--LPISVLRGHTGAVTAIAFSPRP 339
HE I D + T +A+ S+D ++++ + +G + I+ LRGH G V +A++ P
Sbjct: 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH-P 68
Query: 340 SAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399
L S S D IW G S+ H
Sbjct: 69 MYGNILASCSYDRKVIIWRE-----------------ENGT--------WEKSHEHAGHD 103
Query: 400 --ILCCAY--NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455
+ + + G + GSSD + + E + + H N V
Sbjct: 104 SSVNSVCWAPHDYGLILACGSSDGAISLLTY------TGEGQWEVKKINNAHTIGCNAVS 157
Query: 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW 515
++ V + ++ N K + D +W
Sbjct: 158 WAPAVVPGSLIDHPSGQKPNYIKR---------FASGGCDNLIKLWKEEE---------- 198
Query: 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG----VNMIVWSLD---NRFVLA-AIMDC 567
+ + V + W+ +A D
Sbjct: 199 --------------------DGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG 238
Query: 568 RICVWNAVDGS----LVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTIVWD 616
R+ +W D S L + V V ++ +A +G D + +W
Sbjct: 239 RVFIWTCDDASSNTWSPKLLHKF--NDVVWHVS-WSITANILA-VSGGDNKVTLWK 290
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 7e-17
Identities = 16/115 (13%), Positives = 38/115 (33%), Gaps = 8/115 (6%)
Query: 231 QKMQNIKKLRGHRDAVYCAIF----DRSGRFVITGSDDRLVKIWSMETA----FCLASCR 282
+ + +KL H D V + + + S D V IW+ + A +
Sbjct: 200 GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH 259
Query: 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP 337
+ ++ S ++A + D + +W+ + +++ S
Sbjct: 260 KFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASV 314
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 1e-16
Identities = 50/385 (12%), Positives = 97/385 (25%), Gaps = 140/385 (36%)
Query: 321 SVLRGHTGAVTAIAFSPRPSAIY--QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAIT 378
+V H + Y +L + S D + +I+D R
Sbjct: 7 TVDTSHEDMIHDAQMDY-----YGTRLATCSSDRSVKIFDVR-----------------N 44
Query: 379 GKSNVPSNNGPSSSNGLQSHQ--ILCCAY--NANGTVFVTGSSDTFARVWSACKSSVEDS 434
G + ++ L+ H+ + A+ G + + S D +W E++
Sbjct: 45 GGQILIAD--------LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR------EEN 90
Query: 435 EQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR 494
+ +GH++ VN V ++ P + S
Sbjct: 91 GTWE-KSHEHAGHDSSVNSVCWA-------------------PHDYGLI-----LACGSS 125
Query: 495 DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG----VNM 550
DG+ + G + + N
Sbjct: 126 DGAISLLT------------------------------YTGEGQWEVKKINNAHTIGCNA 155
Query: 551 IVWSLDNRFVLAAIM-----------------DCRICVWNAVDGS---LVHSLTGHSASS 590
+ W+ D I +W + L H S
Sbjct: 156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH--SD 213
Query: 591 YVLDVHPFNP-------RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGK-----F 638
+V DV + P IA S DGR +W + + + + +
Sbjct: 214 WVRDV-AWAPSIGLPTSTIA-SCSQDGRVFIWTCDDASS-NTWSPKLLHKFNDVVWHVSW 270
Query: 639 SPDGTSIVLSDDVGQIYL--LNTGQ 661
S + +S ++ L +
Sbjct: 271 SITANILAVSGGDNKVTLWKESVDG 295
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 17/131 (12%)
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGS--LVHSLTGHSASSYVLDV---HPFNPRI 602
++ + D + +++ +G L+ L GH V V HP I
Sbjct: 16 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGP--VWQVAWAHPMYGNI 73
Query: 603 AMSAGYDGRTIVWDIWEGTPIRIYEI----GRFKLVDGKFSPDGTSIVL---SDDVGQIY 655
S YD + I+W GT + +E V ++P ++L S D G I
Sbjct: 74 LASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSV--CWAPHDYGLILACGSSD-GAIS 130
Query: 656 LLNTGQGESQK 666
LL +
Sbjct: 131 LLTYTGEGQWE 141
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 4e-05
Identities = 8/70 (11%), Positives = 16/70 (22%)
Query: 225 KPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGH 284
+ K L D V+ + + + D V +W
Sbjct: 244 TCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303
Query: 285 EGDITDLAVS 294
++ S
Sbjct: 304 NKGQGSVSAS 313
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 3e-38
Identities = 61/412 (14%), Positives = 113/412 (27%), Gaps = 62/412 (15%)
Query: 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF--CLASCRGHEGDITD 290
M + L Y F+ +T + V+++ + + H+ +T
Sbjct: 1 MATSQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTC 60
Query: 291 LAVSSNNTLVASASNDFVIRVWRL---PDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLS 347
+ + + + + S D V+ VL A T + +SP +
Sbjct: 61 VDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED---KFAV 117
Query: 348 SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAY 405
S + N+ S + + + IL +
Sbjct: 118 GSGARVISVCYFE-----------------------QENDWWVSKHLKRPLRSTILSLDW 154
Query: 406 NANGTVFVTGSSDTFARVWSACKSSVE--------DSEQPIHELDVLSGHENDVNYVQFS 457
+ N + G +D A V SA V+ S P + + V+ V FS
Sbjct: 155 HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFS 214
Query: 458 --GCAVASRSAMS-----DAFKEENVPKFKNSWFCHDNIVTC---SRDGSAII--WIPRS 505
G A+A S E P+ + + + + + + +
Sbjct: 215 PSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSP 274
Query: 506 RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM 565
G W L R + +L + F M
Sbjct: 275 ILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGR----EEEGPVSFTALRSTF---RNM 327
Query: 566 DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617
D + + VH + Y P N S+G DGR ++W +
Sbjct: 328 DLKGSSQSISSLPTVHQNMIATLRPY--AGTPGNITAFTSSGTDGRVVLWTL 377
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 4e-30
Identities = 36/382 (9%), Positives = 90/382 (23%), Gaps = 85/382 (22%)
Query: 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP--ISVLRGHTGAVTAIAFSPRPS 340
+ A +S T + + + ++ H VT + ++P+ +
Sbjct: 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSN 68
Query: 341 AIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400
++++ S D +++ R K + +
Sbjct: 69 ---RIVTCSQDRNAYVYEKRPDG------TWKQTLVLLR----------------LNRAA 103
Query: 401 LCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460
++ N F GS V E + + + + +
Sbjct: 104 TFVRWSPNEDKFAVGSGARVISVCY-----FEQENDWWVSKHLKRPLRSTILSLDWH--- 155
Query: 461 VASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRA 518
+N + D A + R K
Sbjct: 156 -------------------------PNNVLLAAGCADRKAYVLSAYVRDVDAK------- 183
Query: 519 YHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS 578
P + P+ V+ + +S + A D + +
Sbjct: 184 -----PEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE 238
Query: 579 ----LVHSLTGHSASSYVLDV--HPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFK 632
+ ++ + + + +A AGY+ I+ +
Sbjct: 239 QPPRALITVKLSQ--LPLRSLLWANESAIVA--AGYNYSPILLQ-GNESGWAHTRDLDAG 293
Query: 633 LVDGKFSPDGTSIVLSDDVGQI 654
F+ G + ++ G +
Sbjct: 294 TSKTSFTHTGNTGEGREEEGPV 315
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 6e-18
Identities = 42/354 (11%), Positives = 88/354 (24%), Gaps = 111/354 (31%)
Query: 321 SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGK 380
VL AF+ + + + ++++ +++
Sbjct: 5 QVLHILPKPSYEHAFNSQRT---EFVTTTATNQVELYEQ--------------------- 40
Query: 381 SNVPSNNGPSSSNGLQSHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPI 438
NG + H + C + VT S D A V+ +
Sbjct: 41 ----DGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK------RPDGTW 90
Query: 439 HELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSA 498
+ VL +V++S P D S
Sbjct: 91 KQTLVLLRLNRAATFVRWS-------------------PN-------EDKFAVGSGARVI 124
Query: 499 IIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558
+ W + HLK +P R + + W +N
Sbjct: 125 SVCYFEQEND------WWVSKHLK--------RPLRST-----------ILSLDWHPNNV 159
Query: 559 FVLAAIMDCRICVWNAVDGSLVHSLTG---------------HSASSYVLDVHPFNP--- 600
+ A D + V +A + + + +V V F+P
Sbjct: 160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVG-FSPSGN 218
Query: 601 RIAMSAGYDGRTIVWDI----WEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDD 650
+A AG+D + + ++ + L ++ + + +
Sbjct: 219 ALA-YAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYN 271
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 8e-13
Identities = 44/307 (14%), Positives = 77/307 (25%), Gaps = 93/307 (30%)
Query: 390 SSSNGLQSHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGH 447
++S L A+N+ T FVT ++ ++ + + S H
Sbjct: 2 ATSQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWK-------HARTFSDH 54
Query: 448 ENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRS 505
+ V V ++ + IVTCS+D +A ++ R
Sbjct: 55 DKIVTCVDWA----------------------------PKSNRIVTCSQDRNAYVYEKRP 86
Query: 506 RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM 565
+ + R R + WS +
Sbjct: 87 DGTWKQTLVLLR--LN------------------------RAATFVRWSPNEDKFAVGSG 120
Query: 566 DCRICVWNAVDGS----LVHSLTGHSASSYVLDV--HPFNPRIAMSAGYDGRTIVWDIWE 619
I V + H S +L + HP N +A + D + V +
Sbjct: 121 ARVISVCYFEQENDWWVSKHLKRPLR--STILSLDWHPNNVLLA-AGCADRKAYVLSAYV 177
Query: 620 GTP----------------IRIYEIGRFKLVDG-KFSPDGTSIVL-SDDVGQIYLLNTGQ 661
E V FSP G ++ D + +
Sbjct: 178 RDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHD-SSVTIAYPSA 236
Query: 662 GESQKDA 668
E A
Sbjct: 237 PEQPPRA 243
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 5e-11
Identities = 20/148 (13%), Positives = 45/148 (30%), Gaps = 14/148 (9%)
Query: 223 IAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR 282
IA PS Q + + ++ + + ++ V G + + + E+ + R
Sbjct: 231 IAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHT--R 288
Query: 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRG-----------HTGAVT 331
+ + + + + + L L+G H +
Sbjct: 289 DLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIA 348
Query: 332 AIA-FSPRPSAIYQLLSSSDDGTCRIWD 358
+ ++ P I SS DG +W
Sbjct: 349 TLRPYAGTPGNITAFTSSGTDGRVVLWT 376
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 7e-38
Identities = 73/463 (15%), Positives = 129/463 (27%), Gaps = 137/463 (29%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
++ L H+ S + + S + ++++ L + T LA
Sbjct: 78 VRTLHQHKLGR---ASWPSVQQGLQQS-----FLHTLDSYRILQKAAPFDRRATSLAWHP 129
Query: 296 NNT-LVASASNDFVIRVWRLPDGLPISV--LRGHTGAVTAIAFSPRPSAIYQLLSSSDDG 352
+ VA S I +W + G G++T + F+P + Q +SS +G
Sbjct: 130 THPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTN--QFYASSMEG 187
Query: 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGT 410
T R+ D + V + + +A+
Sbjct: 188 TTRLQDFK-----------------GNILRVFA--------SSDTINIWFCSLDVSASSR 222
Query: 411 VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470
+ VTG + + + D ++ L L H+ V +V +
Sbjct: 223 MVVTGDNVGNVILLNM------DGKE----LWNLRMHKKKVTHVALN----------PC- 261
Query: 471 FKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPP 530
C + T S D + IW R R
Sbjct: 262 --------------CDWFLATASVDQTVKIWDLRQVRGKASF------------------ 289
Query: 531 QPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHS--- 587
LP VN +S D +L I V++A L H
Sbjct: 290 --------LYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH 341
Query: 588 ---ASSYVLDVHPFNPRIA----------MSAGYDGRTI-VWDIWEGTPIRIYEIGRFKL 633
+ HP I Y+ RTI V+D G + +L
Sbjct: 342 FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMC-------QL 394
Query: 634 VDG---------KFSPDGTSIVL-SDDVGQIYLLNTGQGESQK 666
D +F+P G ++ I + + + ++K
Sbjct: 395 YDPESSGISSLNEFNPMGDTLASAMGY--HILIWSQQEARTRK 435
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 7e-38
Identities = 58/414 (14%), Positives = 107/414 (25%), Gaps = 103/414 (24%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSG-RFVITGSDDRLVKIWSMET--AFCLASCRGHEG 286
+ + ++K + + V GS + +W+ G G
Sbjct: 106 LDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG 165
Query: 287 DITDLAVSSNN-TLVASASNDFVIRVWRLPDGLPISVLRGHT--GAVTAIAFSP--RPSA 341
IT L + N ++S + R+ + T ++ S R
Sbjct: 166 SITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSR--- 222
Query: 342 IYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ-- 399
+++ + G + + GK L+ H+
Sbjct: 223 --MVVTGDNVGNVILLNM------------------DGKELWN----------LRMHKKK 252
Query: 400 ILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSG 458
+ A N T S D ++W + H + VN FS
Sbjct: 253 VTHVALNPCCDWFLATASVDQTVKIWDL------RQVRGKASFLYSLPHRHPVNAACFS- 305
Query: 459 CAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWT 516
D ++T + ++
Sbjct: 306 ---------------------------PDGARLLTTDQKSEIRVYSASQWDCPL-----G 333
Query: 517 RAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCR-ICVWNAV 575
H L P PR + ++ D F + R I V++
Sbjct: 334 LIPHPHRHFQHLTPIKAAWHPRYN-------LIVVGRYPDPNFKSCTPYELRTIDVFDGN 386
Query: 576 DGSLVHSLT-GHSASSYVLDVHPFNP---RIAMSAGYDGRTI-VWDIWEGTPIR 624
G ++ L SS + ++ FNP +A SA G I +W E +
Sbjct: 387 SGKMMCQLYDPE--SSGISSLNEFNPMGDTLA-SAM--GYHILIWSQQEARTRK 435
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 1e-18
Identities = 47/392 (11%), Positives = 89/392 (22%), Gaps = 117/392 (29%)
Query: 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFS 336
C + R A + S + +R+ + T++A+
Sbjct: 74 CRSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRI-----LQKAAPFDRRATSLAWH 128
Query: 337 PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396
P + + S G +W+ I K G S
Sbjct: 129 PTHPST--VAVGSKGGDIMLWNF----------------GIKDKPTFIKGIGAGGS---- 166
Query: 397 SHQILCCAYN-ANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455
I +N N F S + R+ + L V + + +
Sbjct: 167 ---ITGLKFNPLNTNQFYASSMEGTTRLQDFKG----------NILRVFASSDTINIWF- 212
Query: 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVG 513
C++ + +VT G+ I+
Sbjct: 213 ---CSLD---------------------VSASSRMVVTGDNVGNVILL------------ 236
Query: 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA-AIMDCRICVW 572
G L + V + + + LA A +D + +W
Sbjct: 237 ------------------NMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIW 278
Query: 573 NAVDGSLVHSLT---GHSASSYVLDVHPFNP---RIAMSAGYDGRTIVWDIWEGTPIRI- 625
+ S H V F+P R+ + V+ +
Sbjct: 279 DLRQVRGKASFLYSLPH--RHPVNAAC-FSPDGARLL-TTDQKSEIRVYSASQWDCPLGL 334
Query: 626 -----YEIGRFKLVDGKFSPDGTSIVL--SDD 650
+ + P IV+ D
Sbjct: 335 IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPD 366
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 7e-12
Identities = 47/373 (12%), Positives = 86/373 (23%), Gaps = 138/373 (36%)
Query: 301 ASASNDFVIRVWRLPDGLPI-----SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355
+ +W G I S++R A P + Q L S
Sbjct: 51 GPSRRCDSDCLWVGLAGPQILPPCRSIVRTLHQHKLGRASWPS---VQQGLQQS-----F 102
Query: 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGT-VF 412
+ + + A++
Sbjct: 103 LHTLD-----------------SYRILQK----------AAPFDRRATSLAWHPTHPSTV 135
Query: 413 VTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFK 472
GS +W+ ++P G + ++F+
Sbjct: 136 AVGSKGGDIMLWN-----FGIKDKPT--FIKGIGAGGSITGLKFN--------------- 173
Query: 473 EENVPKFKNSWFCHD--NIVTCSRDGSAIIW-----IPRSRRSHGKVGRWTRAYHLKVPP 525
P + S +G+ + I R S + W
Sbjct: 174 ----P--------LNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIW---------- 211
Query: 526 PPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG 585
+ S +R V+ + + N +DG + +L
Sbjct: 212 ----------------------FCSLDVSASSRMVVTGDNVGNVILLN-MDGKELWNLRM 248
Query: 586 HSASSYVLDVHPFNP---RIAMSAGYDGRTI-VWDIWEGTPIRIYEIGRFKLVDG----- 636
H V V NP +A D +T+ +WD+ + F
Sbjct: 249 H--KKKVTHVA-LNPCCDWFLATASVD-QTVKIWDLRQVRG-----KASFLYSLPHRHPV 299
Query: 637 ---KFSPDGTSIV 646
FSPDG ++
Sbjct: 300 NAACFSPDGARLL 312
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 5e-08
Identities = 22/353 (6%), Positives = 76/353 (21%), Gaps = 111/353 (31%)
Query: 310 RVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAI--YQLLSSSDDGTCRIWDARYSQYSPR 367
+ I + + + + + P + S + +W
Sbjct: 13 KRPETQKTSEIVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGP---- 68
Query: 368 IYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSAC 427
P + +++ + S + +
Sbjct: 69 ------------------QILPPCRSIVRTL---------HQHKLGRASWPSVQQGLQQS 101
Query: 428 KSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHD 487
DS + + + + + +
Sbjct: 102 FLHTLDSYRILQ---KAAPFDRRATSLAWH----------------------------PT 130
Query: 488 N---IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPT 544
+ + S+ G ++W + +
Sbjct: 131 HPSTVAVGSKGGDIMLWNFGIKD-------------------------------KPTFIK 159
Query: 545 PRG----VNMIVWS-LDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFN 599
G + + ++ L+ A+ M+ + + L + + + + + +
Sbjct: 160 GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSL-DVS 218
Query: 600 P---RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDG-KFSPDGTSIVLS 648
+ + G I+ ++ +G + K V +P + +
Sbjct: 219 ASSRMVV-TGDNVGNVILLNM-DGKELWNLR-MHKKKVTHVALNPCCDWFLAT 268
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 4e-37
Identities = 58/421 (13%), Positives = 119/421 (28%), Gaps = 138/421 (32%)
Query: 231 QKMQNIKKLRGHRDAVYC-AIFDRSGRFVITGSDDRLVKIWSM-----ETAFCLASCRGH 284
+ + L GH V A +++ S D+ + W + + + S +GH
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 64
Query: 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP--RPSAI 342
+ D ++++ SAS D +R+W + G GH V ++
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS---- 120
Query: 343 YQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--I 400
++S S D T ++W G+ L H +
Sbjct: 121 -MIISGSRDKTIKVWTI------------------KGQCLAT----------LLGHNDWV 151
Query: 401 LCCAY------NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV 454
+ + ++ +D + W+ + Q GH +++N +
Sbjct: 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNL------NQFQIEA---DFIGHNSNINTL 202
Query: 455 QFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKV 512
S D I + +DG ++W ++
Sbjct: 203 TAS----------------------------PDGTLIASAGKDGEIMLWNLAAK------ 228
Query: 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG---VNMIVWSLDNRFVLAAIMDCRI 569
+ + T V + +S + + LAA I
Sbjct: 229 ---------------------------KAMYTLSAQDEVFSLAFSPNRYW-LAAATATGI 260
Query: 570 CVWNAVDGSLVHSLTGHSA------SSYVLDVHPFNP---RIAMSAGYDGRTI-VWDIWE 619
V++ LV L A + + + ++ + + D I VW +
Sbjct: 261 KVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLA-WSADGQTLF-AGYTDN-VIRVWQVMT 317
Query: 620 G 620
Sbjct: 318 A 318
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 1e-32
Identities = 68/402 (16%), Positives = 121/402 (30%), Gaps = 132/402 (32%)
Query: 273 ETAFCLASCRGHEGDITDLAVSSNN-TLVASASNDFVIRVWRLPD-----GLPISVLRGH 326
E + GH G +T LA S+ L+ SAS D + W+L G+P+ +GH
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 64
Query: 327 TGAVTAIAFSP--RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384
+ V + LS+S D T R+WD TG++
Sbjct: 65 SHIVQDCTLTADGA-----YALSASWDKTLRLWDVA-----------------TGETYQR 102
Query: 385 SNNGPSSSNGLQSHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442
H+ ++ + ++ ++GS D +VW+ Q +
Sbjct: 103 ----------FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-------KGQCLA--- 142
Query: 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAII 500
L GH + V+ V+ P N D+ I++ D
Sbjct: 143 TLLGHNDWVSQVRVV-------------------P---NEKADDDSVTIISAGNDKMVKA 180
Query: 501 WIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG----VNMIVWSLD 556
W + + G +N + S D
Sbjct: 181 WNLNQFQ---------------------------------IEADFIGHNSNINTLTASPD 207
Query: 557 NRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTI 613
+ +A D I +WN +++L+ V + F+P +A +A I
Sbjct: 208 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---DEVFSLA-FSPNRYWLA-AATAT--GI 260
Query: 614 -VWDIWEGTPIRIYEIGRFKLVDGK--------FSPDGTSIV 646
V+ + + +S DG ++
Sbjct: 261 KVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 4e-24
Identities = 62/357 (17%), Positives = 108/357 (30%), Gaps = 118/357 (33%)
Query: 323 LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSN 382
L GH G VT++A S + LLS+S D T W D G
Sbjct: 13 LEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKL------------TGDDQKFGVPV 58
Query: 383 VPSNNGPSSSNGLQ--SHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHE 440
+ SH + C A+G ++ S D R+W + +
Sbjct: 59 RS----------FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV------ATGETYQ- 101
Query: 441 LDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSA 498
GH++DV V I++ SRD +
Sbjct: 102 --RFVGHKSDVMSVDID----------------------------KKASMIISGSRDKTI 131
Query: 499 IIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG----VNMIVWS 554
+W G+ L T G V+ +
Sbjct: 132 KVW-----TIKGQ-----------------------------CLATLLGHNDWVSQVRVV 157
Query: 555 ------LDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP---RIAMS 605
D+ +++A D + WN + GH +S + + +P IA S
Sbjct: 158 PNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH--NSNINTL-TASPDGTLIA-S 213
Query: 606 AGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVL-SDDVGQIYLLNTGQ 661
AG DG ++W++ + + ++ FSP+ + + +++ L+
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLS-AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 2e-07
Identities = 36/202 (17%), Positives = 61/202 (30%), Gaps = 68/202 (33%)
Query: 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIV 490
+ +E + L GH V + S N ++
Sbjct: 1 MASNEV-LVLRGTLEGHNGWVTSLATS-------------------AGQPNL------LL 34
Query: 491 TCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG--- 547
+ SRD + I W K+ + + G P + +G
Sbjct: 35 SASRDKTLISW---------KLTGDDQKF---------------GVPVRSF----KGHSH 66
Query: 548 -VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP---RIA 603
V + D + L+A D + +W+ G GH + V+ V + I
Sbjct: 67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD--VMSVD-IDKKASMII 123
Query: 604 MSAGYDGRTI-VWDIWEGTPIR 624
S D +TI VW I +G +
Sbjct: 124 -SGSRD-KTIKVWTI-KGQCLA 142
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 148 bits (374), Expect = 2e-36
Identities = 88/544 (16%), Positives = 165/544 (30%), Gaps = 97/544 (17%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF--CLASCRGHEGDIT--DL 291
+ H + ++ A+ D G+ + T S D+ +KI+ +E + + GHEG + D
Sbjct: 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 292 AVSSNNTLVASASNDFVIRVWRLPDG--LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS 349
A T++AS S D + +W+ +G I+V H+ +V ++ ++P LL +S
Sbjct: 62 AHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL-LLVAS 120
Query: 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG 409
DG + + + + + I + + S P+ +
Sbjct: 121 SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH----------NGTKES 170
Query: 410 TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSD 469
FVTG +D ++W Q L GH + V V +S +
Sbjct: 171 RKFVTGGADNLVKIW-----KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY---- 221
Query: 470 AFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLP 529
+ + S+D + IIW
Sbjct: 222 -------------------LASVSQDRTCIIW---------------------------- 234
Query: 530 PQPPRGGPRQRLLPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG 585
Q GP ++ L + WSL + + D ++ +W +L G
Sbjct: 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE-------NLEG 287
Query: 586 HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSI 645
+VH S G + +D I + +D
Sbjct: 288 K--WEPAGEVHQGGGG---SGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERR 342
Query: 646 VLSDDVGQIYLLNTGQGESQKDAKYDQFFLGDYRPLIR----DSLGNVLDQETQLVPHRR 701
+ + + K L R D + + E + R+
Sbjct: 343 FTASYTFAKFSTGSMLLTKDIVGKSGVSIKRLPTELQRKFLFDDVYLDKEIEKVTIEARK 402
Query: 702 NIQDPLCDSSMIPYEEPYQSMYQQRRLGALGIEWRPSSIKL-AIGLDFSLGQDYAMPPLE 760
+ P S + ++ + + W+ SSI + + D L
Sbjct: 403 SNPYPQISESSL---LFKDALDYMEKTSSDYNLWKLSSILFDPVSYPYKTDNDQVKMALL 459
Query: 761 DLER 764
ER
Sbjct: 460 KKER 463
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 3e-26
Identities = 39/255 (15%), Positives = 74/255 (29%), Gaps = 52/255 (20%)
Query: 234 QNIKKLRGHRDAVYCAI--FDRSGRFVITGSDDRLVKIWSMET--AFCLASCRGHEGDIT 289
+ I L GH V+ + G + + S D V IW E +A H +
Sbjct: 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN 103
Query: 290 DLAVSSNN--TLVASASNDFVIRVWRLPDGLPIS--VLRGHTGAVTAIAFSPRPSAIYQ- 344
+ + + L+ AS+D + V + S ++ H V + +++P
Sbjct: 104 SVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163
Query: 345 ---------LLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL 395
++ D +IW DA T L
Sbjct: 164 HNGTKESRKFVTGGADNLVKIWKYN-------------SDAQTYVLEST----------L 200
Query: 396 QSHQ--ILCCAY---NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEND 450
+ H + A+ + + S D +W+ + L +
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ----DNEQGPWKKTLLKEEKFPDV 256
Query: 451 VNYVQFS--GCAVAS 463
+ +S G +A
Sbjct: 257 LWRASWSLSGNVLAL 271
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 1e-24
Identities = 33/249 (13%), Positives = 63/249 (25%), Gaps = 53/249 (21%)
Query: 232 KMQNIKKLRGHRDAVYCAIF--DRSGRFVITGSDDRLVKIWSMETAFCLASC--RGHEGD 287
+ I H +V + G ++ S D V + + + H
Sbjct: 88 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 147
Query: 288 ITDLAVS-------------SNNTLVASASNDFVIRVWRLPDGLP----ISVLRGHTGAV 330
+ + + + + D ++++W+ S L GH+ V
Sbjct: 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207
Query: 331 TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPS 390
+A+SP L S S D TC IW D G
Sbjct: 208 RDVAWSPTVLLRSYLASVSQDRTCIIWTQ---------------DNEQGPWK-------K 245
Query: 391 SSNGLQSHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE 448
+ + + +++ +G V D +W H+
Sbjct: 246 TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW--------KENLEGKWEPAGEVHQ 297
Query: 449 NDVNYVQFS 457
Sbjct: 298 GGGGSGGGG 306
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 77.3 bits (190), Expect = 3e-14
Identities = 23/215 (10%), Positives = 54/215 (25%), Gaps = 30/215 (13%)
Query: 225 KPSTMVQKMQNIKKLRGHRDAVYCAIF---DRSGRFVITGSDDRLVKIWSMETA-----F 276
K ++ Q L GH D V + ++ + S DR IW+ +
Sbjct: 186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKK 245
Query: 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFS 336
L + + S + ++A + D + +W+ L G +
Sbjct: 246 TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK-------ENLEGKWEPAGEVHQ- 297
Query: 337 PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396
S T + +D ++ + ++ N
Sbjct: 298 ------GGGGSGGGGATSKEFDGPCQNEIDLLF--------SECNDEIDNAKLIMKERRF 343
Query: 397 SHQILCCAYNANGTVFVTGSSDTFARVWSACKSSV 431
+ ++ + + +
Sbjct: 344 TASYTFAKFSTGSMLLTKDIVGKSGVSIKRLPTEL 378
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 3e-09
Identities = 23/205 (11%), Positives = 49/205 (23%), Gaps = 21/205 (10%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
+ + K D ++ A + SG + D V +W + G + A
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK-------ENLEGK----WEPAG 293
Query: 294 SSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT 353
+ S + + P I +L A + + T
Sbjct: 294 EVHQGGGGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRF-----TASYT 348
Query: 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI---LCCAYNANGT 410
+ + + + + +I A +N
Sbjct: 349 FAKFSTGSMLLTKD--IVGKSGVSIKRLPTELQRKFLFDDVYLDKEIEKVTIEARKSNPY 406
Query: 411 VFVTGSSDTFARVWSACKSSVEDSE 435
++ SS F + + D
Sbjct: 407 PQISESSLLFKDALDYMEKTSSDYN 431
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 2e-05
Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 21/143 (14%)
Query: 541 LLPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGS--LVHSLTGHSASSYVLD 594
++ ++ V + + D I ++ + L+ +LTGH + +D
Sbjct: 1 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVD 60
Query: 595 V--HPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEI----GRFKLVDGKFSPDGTSIVL- 647
F +A S YDG+ ++W G +I V +++P +L
Sbjct: 61 WAHPKFGTILA-SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSV--QWAPHEYGPLLL 117
Query: 648 --SDDVGQIYLLN--TGQGESQK 666
S D G++ ++ S
Sbjct: 118 VASSD-GKVSVVEFKENGTTSPI 139
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 2e-36
Identities = 81/453 (17%), Positives = 142/453 (31%), Gaps = 138/453 (30%)
Query: 210 HHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIF--DRSGRFVITGSDDRLV 267
+ + A + + +R H D V D + +++ S D+ +
Sbjct: 349 NAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPID-NADIIVSASRDKSI 407
Query: 268 KIWSME-----TAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISV 322
+W + GH + D+ +SS+ S S D +R+W L G+
Sbjct: 408 ILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRR 467
Query: 323 LRGHTGAVTAIAFSP--RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGK 380
GHT V ++AFS R Q++S+S D T ++W+ G+
Sbjct: 468 FVGHTKDVLSVAFSLDNR-----QIVSASRDRTIKLWNT------------------LGE 504
Query: 381 SNVPSNNGPSSSNGLQSHQ--ILCCAYNANGT--VFVTGSSDTFARVWSA--CKSSVEDS 434
+ S G + H+ + C ++ N V+ S D +VW+ CK
Sbjct: 505 C------KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK------ 552
Query: 435 EQPIHELDVLSGHENDVNYVQFS--GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTC 492
L+GH V+ V S G AS
Sbjct: 553 -----LRSTLAGHTGYVSTVAVSPDGSLCAS----------------------------G 579
Query: 493 SRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG---VN 549
+DG ++W + L + ++
Sbjct: 580 GKDGVVLLWDLAEG---------------------------------KKLYSLEANSVIH 606
Query: 550 MIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGY- 608
+ +S + R+ L A + I +W+ S+V L + + Y
Sbjct: 607 ALCFSPN-RYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYC 665
Query: 609 -------DGRTIV---WDIWEGTPIRIYEIGRF 631
DG T+ D G IR++ IGR+
Sbjct: 666 TSLNWSADGSTLFSGYTD---GV-IRVWGIGRY 694
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 7e-31
Identities = 75/453 (16%), Positives = 143/453 (31%), Gaps = 139/453 (30%)
Query: 231 QKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITD 290
+ M NI ++ AV A+ + + + + + + R H +T
Sbjct: 328 EIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTA 387
Query: 291 LAVSSNN-TLVASASNDFVIRVWRLPD-----GLPISVLRGHTGAVTAIAFSP--RPSAI 342
+A +N ++ SAS D I +W+L G+ L GH+ V + S +
Sbjct: 388 IATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ---- 443
Query: 343 YQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--I 400
LS S DG R+WD G S H +
Sbjct: 444 -FALSGSWDGELRLWDLA-----------------AGVSTRR----------FVGHTKDV 475
Query: 401 LCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460
L A++ + V+ S D ++W+ + + + I + GH + V+ V+FS
Sbjct: 476 LSVAFSLDNRQIVSASRDRTIKLWNT----LGECKYTI--SEGGEGHRDWVSCVRFS--- 526
Query: 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYH 520
P IV+ S D + +W + +
Sbjct: 527 ----------------PNTLQPT-----IVSASWDKTVKVWNLSNCK------------- 552
Query: 521 LKVPPPPLPPQPPRGGPRQRLLPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVD 576
L T G V+ + S D + D + +W+ +
Sbjct: 553 --------------------LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592
Query: 577 GSLVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTI-VWDIWEGTPIRIYEIGRFK 632
G ++SL + S + + F+P + A + I +WD+ + + ++
Sbjct: 593 GKKLYSLEAN---SVIHALC-FSPNRYWLC--AATE-HGIKIWDLESKSIVEDLKVDLKA 645
Query: 633 LVDGK-------------------FSPDGTSIV 646
+ +S DG+++
Sbjct: 646 EAEKADNSGPAATKRKVIYCTSLNWSADGSTLF 678
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 3e-30
Identities = 70/440 (15%), Positives = 123/440 (27%), Gaps = 127/440 (28%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
+ + + + + + + + +
Sbjct: 287 DEGLEAVNKDKPLGAVALKSYEEELAKDPRIAAT-MENAQKGEIMPNIPQMSAFWYAVRT 345
Query: 294 SSNNTL---VASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD 350
+ N + + + +R HT VTAIA + I ++S+S
Sbjct: 346 AVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPIDNADI--IVSASR 403
Query: 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ--SHQILCCAYNAN 408
D + +W D G + L SH + +++
Sbjct: 404 DKSIILWKL------------TKDDKAYGVAQRR----------LTGHSHFVEDVVLSSD 441
Query: 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468
G ++GS D R+W + GH DV V FS
Sbjct: 442 GQFALSGSWDGELRLWDL------AAGVSTR---RFVGHTKDVLSVAFS----------- 481
Query: 469 DAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPP 526
DN IV+ SRD + +W
Sbjct: 482 -----------------LDNRQIVSASRDRTIKLW------------------------- 499
Query: 527 PLPPQPPRGGPRQRLLPTPRG----VNMIVWSLD-NRFVLA-AIMDCRICVWNAVDGSLV 580
G + + G V+ + +S + + + A D + VWN + L
Sbjct: 500 -----NTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR 554
Query: 581 HSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGK 637
+L GH + YV V +P A S G DG ++WD+ EG + E
Sbjct: 555 STLAGH--TGYVSTV-AVSPDGSLCA-SGGKDGVVLLWDLAEGKKLYSLE--------AN 602
Query: 638 -------FSPDGTSIVLSDD 650
FSP+ + + +
Sbjct: 603 SVIHALCFSPNRYWLCAATE 622
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 7e-14
Identities = 63/377 (16%), Positives = 107/377 (28%), Gaps = 119/377 (31%)
Query: 291 LAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD 350
+ +S N +A +F+ +GL + A+A + L+
Sbjct: 266 INAASPNKELAK---EFLENYLLTDEGLE---AVNKDKPLGAVALKS----YEEELAKDP 315
Query: 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT 410
+ +A+ + P I A+
Sbjct: 316 RIAATMENAQKGEIMPNI-------------------------------PQMSAFWYAVR 344
Query: 411 VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470
V ++ V +A ++ ++ + + H + V +
Sbjct: 345 TAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATP------------- 391
Query: 471 FKEENVPKFKNSWFCHDN---IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPP 527
DN IV+ SRD S I+W
Sbjct: 392 ---------------IDNADIIVSASRDKSIILWKLTKD--------------------- 415
Query: 528 LPPQPPRGGPRQRLLPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL 583
G ++RL G V +V S D +F L+ D + +W+ G
Sbjct: 416 ---DKAYGVAQRRL----TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF 468
Query: 584 TGHSASSYVLDVHPFNP---RIAMSAGYDGRTI-VWDI--WEGTPIRIYEIGRFKLVDG- 636
GH+ VL V F+ +I SA D RTI +W+ I G V
Sbjct: 469 VGHTKD--VLSVA-FSLDNRQIV-SASRD-RTIKLWNTLGECKYTISEGGEGHRDWVSCV 523
Query: 637 KFSPDGTSIVL---SDD 650
+FSP+ + S D
Sbjct: 524 RFSPNTLQPTIVSASWD 540
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 2e-36
Identities = 49/356 (13%), Positives = 99/356 (27%), Gaps = 95/356 (26%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
K L GH V + F I+ S D+ +++W + T GH+ ++ +A S
Sbjct: 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP 128
Query: 296 NNTLVASASNDFVIRVWRLPDGLPISV--LRGHTGAVTAIAFSP-------RPSAIYQLL 346
+N + SA + I++W + S H+ V+ + +SP
Sbjct: 129 DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA 188
Query: 347 SSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCA 404
S DG ++W+ + ++H+ + +
Sbjct: 189 SVGWDGRLKVWNT------------------NFQIRYT----------FKAHESNVNHLS 220
Query: 405 YNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVA 462
+ NG TG D +W + + +N + F+ VA
Sbjct: 221 ISPNGKYIATGGKDKKLLIWDI------LNLTYPQREF---DAGSTINQIAFNPKLQWVA 271
Query: 463 SRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLK 522
+ D I+ ++
Sbjct: 272 VGT-----------------------------DQGVKIFNLMTQSK--------APVCTI 294
Query: 523 VPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS 578
P + +G Q + W+ + + A D I ++ +
Sbjct: 295 EAEPITKAEGQKGKNPQ--------CTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 2e-35
Identities = 56/423 (13%), Positives = 129/423 (30%), Gaps = 137/423 (32%)
Query: 262 SDDRLVKIWSMETAFCLASCRGHEGDITDLA------VSSNNTLVASASNDFVIRVWRL- 314
+D+ + I ++ GH +T + + ++ ++ S S D + +W+L
Sbjct: 2 ADNSSLDIQVVKRG----ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLY 57
Query: 315 ------PDGLPISVLRGHTGAVTAIAFSP--RPSAIYQLLSSSDDGTCRIWDARYSQYSP 366
G+P L GH V+ +A S +SSS D T R+WD R
Sbjct: 58 EEEQNGYFGIPHKALTGHNHFVSDLALSQENC-----FAISSSWDKTLRLWDLR------ 106
Query: 367 RIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGTVFVTGSSDTFARVW 424
TG + HQ + A++ + ++ ++ ++W
Sbjct: 107 -----------TGTTYKR----------FVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
Query: 425 SACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWF 484
+ E H + V+ V++S ++ A
Sbjct: 146 NI------LGECKFS-SAEKENHSDWVSCVRYSPIMKSANKVQPFAPY------------ 186
Query: 485 CHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPT 544
+ DG +W ++ ++
Sbjct: 187 ----FASVGWDGRLKVW-----NTNFQIRY------------TF---------------- 209
Query: 545 PRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP 600
+ VN + S + +++ D ++ +W+ ++ + S + + FNP
Sbjct: 210 -KAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA--GSTINQIA-FNP 265
Query: 601 ---RIAMSAGYDGRTI-VWDIWEGTPIRIYEIGRFKLVDGK-------------FSPDGT 643
+A G D + + ++++ + + I + + ++ G
Sbjct: 266 KLQWVA--VGTD-QGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322
Query: 644 SIV 646
+
Sbjct: 323 KLF 325
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 6e-35
Identities = 65/429 (15%), Positives = 115/429 (26%), Gaps = 151/429 (35%)
Query: 239 LRGHRDAVYCAIFDRS------GRFVITGSDDRLVKIWSMET-------AFCLASCRGHE 285
L GH D V + S +I+GS D+ V IW + + GH
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP--RPSAIY 343
++DLA+S N S+S D +R+W L G GH V ++AFSP R
Sbjct: 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR----- 131
Query: 344 QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--IL 401
Q+LS+ + ++W+ + ++H +
Sbjct: 132 QILSAGAEREIKLWNIL-----------------GECKFSSAE--------KENHSDWVS 166
Query: 402 CCAY----------NANGTVFVTGSSDTFARVWSA-CKSSVEDSEQPIHELDVLSGHEND 450
C Y F + D +VW+ + HE++
Sbjct: 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ-----------IRYTFKAHESN 215
Query: 451 VNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRS 508
VN++ S + I T +D +IW +
Sbjct: 216 VNHLSIS----------------------------PNGKYIATGGKDKKLLIWDILNL-- 245
Query: 509 HGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD---NRFVLAAIM 565
+ + +A
Sbjct: 246 -------------------------------TYPQREFDAGSTINQIAFNPKLQWVAVGT 274
Query: 566 DCRICVWNAVDGSLVHSLTGHSASSYVLDV---HP-------FNP---RIAMSAGYDGRT 612
D + ++N + S T + + +N ++ + DG
Sbjct: 275 DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLF-AGFTDG-V 332
Query: 613 I-VWDIWEG 620
I +
Sbjct: 333 IRTFSFETS 341
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 7e-32
Identities = 35/255 (13%), Positives = 71/255 (27%), Gaps = 56/255 (21%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET--AFCLASCRGHEGDITDL 291
K+ GH+ VY F R +++ +R +K+W++ F A H ++ +
Sbjct: 109 TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCV 168
Query: 292 AVS----------SNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP--RP 339
S AS D ++VW + + H V ++ SP +
Sbjct: 169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGK- 226
Query: 340 SAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399
+ + D IWD
Sbjct: 227 ----YIATGGKDKKLLIWDIL-----------------NLTY----------PQREFDAG 255
Query: 400 --ILCCAYNANGTVFVTGSSDTFARVWSA----CKSSVEDSEQPIHELDVLSGHENDVNY 453
I A+N G+ ++++ +PI + + G
Sbjct: 256 STINQIAFNPKLQWVAVGTDQG-VKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTS 314
Query: 454 VQFS--GCAVASRSA 466
+ ++ G + +
Sbjct: 315 LAWNALGKKLFAGFT 329
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 3e-31
Identities = 32/212 (15%), Positives = 66/212 (31%), Gaps = 39/212 (18%)
Query: 231 QKMQNIKKLRGHRDAVYCAIF----------DRSGRFVITGSDDRLVKIWSMETAFCLAS 280
+ + + H D V C + + + D +K+W+ +
Sbjct: 150 ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ-IRYT 208
Query: 281 CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP-RP 339
+ HE ++ L++S N +A+ D + +W + + + IAF+P
Sbjct: 209 FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKL- 267
Query: 340 SAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGK---SNVPSNNGPSSSNGLQ 396
Q ++ D +I++ T + + G +
Sbjct: 268 ----QWVAVGTDQGVKIFNLM-----------------TQSKAPVCTIEAEPITKAEGQK 306
Query: 397 SHQ--ILCCAYNANGTVFVTGSSDTFARVWSA 426
A+NA G G +D R +S
Sbjct: 307 GKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF 338
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-23
Identities = 58/388 (14%), Positives = 108/388 (27%), Gaps = 132/388 (34%)
Query: 304 SNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAI---YQLLSSSDDGTCRIWDAR 360
+++ + + + G +L GH+ VT+I L+S S D T IW
Sbjct: 2 ADNSSLDIQVVKRG----ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLY 57
Query: 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTF 420
+ N + G +H + A + ++ S D
Sbjct: 58 -----------------EEEQNGYFGIPHKALTG-HNHFVSDLALSQENCFAISSSWDKT 99
Query: 421 ARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFK 480
R+W + GH+++V V FS
Sbjct: 100 LRLWDL------RTGTTYK---RFVGHQSEVYSVAFS----------------------- 127
Query: 481 NSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPR 538
DN I++ + +W
Sbjct: 128 -----PDNRQILSAGAEREIKLWNILGEC------------------------------- 151
Query: 539 QRLLPTPRG----VNMIVWSLDNRFVLAAIM----------DCRICVWNAVDGSLVHSLT 584
+ V+ + +S + D R+ VWN + + ++
Sbjct: 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFK 210
Query: 585 GHSASSYVLDVHPFNP---RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGK---- 637
H S V + +P IA + G D + ++WDI T + + D
Sbjct: 211 AH--ESNVNHL-SISPNGKYIA-TGGKDKKLLIWDILNLTYPQ-------REFDAGSTIN 259
Query: 638 ---FSPDGTSIVL-SDDVGQIYLLNTGQ 661
F+P + + +D +I+ L T
Sbjct: 260 QIAFNPKLQWVAVGTDQGVKIFNLMTQS 287
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 1e-11
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 14/97 (14%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASC------------ 281
++ + F+ ++V G+D VKI+++ T C
Sbjct: 246 TYPQREFDAGSTINQIAFNPKLQWVAVGTDQG-VKIFNLMTQSKAPVCTIEAEPITKAEG 304
Query: 282 -RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG 317
+G T LA ++ + + D VIR +
Sbjct: 305 QKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 7e-04
Identities = 7/52 (13%), Positives = 20/52 (38%)
Query: 223 IAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET 274
+ + + + +G ++ G+ + G D +++ +S ET
Sbjct: 289 APVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 4e-36
Identities = 34/237 (14%), Positives = 69/237 (29%), Gaps = 27/237 (11%)
Query: 238 KLRGHRDAVYCAIFDRS--GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
++ H V + ++ V+TGS D+ +K W ++ + + E V
Sbjct: 122 QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYC-ADVIY 180
Query: 296 NNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIY-QLLSSSDDGTC 354
+VA+A ++ + +A S +G
Sbjct: 181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV 240
Query: 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVT 414
I + + T K + +NG ++S + + A++ T
Sbjct: 241 AIHYINPPNPAKDNF--------TFKCH--RSNGTNTSAPQDIYAVNGIAFHPVHGTLAT 290
Query: 415 GSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVASRSAMSD 469
SD W D+ + + ++ F+ G A A S
Sbjct: 291 VGSDGRFSFWDK------DARTKLKT---SEQLDQPISACCFNHNGNIFA--YASSY 336
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 3e-33
Identities = 62/419 (14%), Positives = 119/419 (28%), Gaps = 120/419 (28%)
Query: 292 AVSSN-NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD 350
++ ++ SA+ D + D I V ++ ++FSP L++ S
Sbjct: 9 GFGTSGTSMFGSATTDNHNPMK---D---IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSW 62
Query: 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNAN 408
R W+ ++G + Q H +L ++ +
Sbjct: 63 ANDVRCWEV-------------------------QDSGQTIPKAQQMHTGPVLDVCWSDD 97
Query: 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468
G+ T S D A++W S Q I ++ H+ V + + S
Sbjct: 98 GSKVFTASCDKTAKMWDL------SSNQAI----QIAQHDAPVKTIHWIKAPNYSC---- 143
Query: 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS------HGKV---------- 512
++T S D + W RS +
Sbjct: 144 --------------------VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMA 183
Query: 513 -----GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI--- 564
R Y L+ P R+ P + D +
Sbjct: 184 VVATAERGLIVYQLENQPSEF---------RRIESPLKHQHRCVAIFKDKQNKPTGFALG 234
Query: 565 -MDCRICVWNAVDG---SLVHSLTGHSAS----SYVLDVHP-----FNP---RIAMSAGY 608
++ R+ + + H ++ S D++ F+P +A + G
Sbjct: 235 SIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLA-TVGS 293
Query: 609 DGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIV--LSDDVGQIYLLNTGQGESQ 665
DGR WD T ++ E + F+ +G S D + + Q ++
Sbjct: 294 DGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNY 352
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 1e-31
Identities = 59/401 (14%), Positives = 104/401 (25%), Gaps = 89/401 (22%)
Query: 232 KMQNIKKLRGHRDAVYCAIF---DRSGRFVITGSDDRLVKIWSMET--AFCLASCRGHEG 286
M++I+ D++ C F G F+I GS V+ W ++ + + H G
Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG 87
Query: 287 DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLL 346
+ D+ S + + V +AS D ++W L I + H V I + P+ ++
Sbjct: 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSC-VM 145
Query: 347 SSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYN 406
+ S D T + WD R P + C
Sbjct: 146 TGSWDKTLKFWDTR---------SSNPMMVLQLPERC-----------------YCADVI 179
Query: 407 ANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSA 466
V T QP + S ++ V
Sbjct: 180 YPMAVVATAERGLIVYQLEN---------QPSEFRRIESPLKHQHRCVAIF--------- 221
Query: 467 MSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWI--PRSRRSHGKVGRWTRAYHLKVP 524
K+ S +G I P + + R
Sbjct: 222 -------------KDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR------- 261
Query: 525 PPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT 584
G VN I + + + D R W+ + + +
Sbjct: 262 ---------SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE 312
Query: 585 GHSASSYVLDVHPFNP---RIAMSAGYDGRTIVWDIWEGTP 622
+ FN A ++ YD + +
Sbjct: 313 QLDQP--ISACC-FNHNGNIFAYASSYDWSKG-HEFYNPQK 349
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 7e-16
Identities = 17/162 (10%), Positives = 41/162 (25%), Gaps = 22/162 (13%)
Query: 239 LRGHRDAVYCAIFDRSGRFVIT----GSDDRLVKIWSMETAFCL---------------A 279
+ C + + T GS + V I +
Sbjct: 208 ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNT 267
Query: 280 SCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRP 339
S + +A + +A+ +D W + ++A F+
Sbjct: 268 SAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG 327
Query: 340 SAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKS 381
+ +S + + Q I+L + + ++
Sbjct: 328 N---IFAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRN 366
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 4e-07
Identities = 37/277 (13%), Positives = 80/277 (28%), Gaps = 93/277 (33%)
Query: 404 AYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVA 462
+ +GT +F + ++D + +++V S ++ + + FS
Sbjct: 9 GFGTSGTSMFGSATTDNHNPMK---------------DIEVTSSPDDSIGCLSFS----- 48
Query: 463 SRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW--------IPRSRRSHGKVGR 514
P + ++ S W IP++++ H
Sbjct: 49 --------------PPTLPG----NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHT---- 86
Query: 515 WTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 574
GP V + WS D V A D +W+
Sbjct: 87 ---------------------GP----------VLDVCWSDDGSKVFTASCDKTAKMWDL 115
Query: 575 VDGSLVHSLTGHSASSYVLDVH----PFNPRIAMSAGYDGRTI-VWDIWEGTPIRIYEIG 629
+ + H A V +H P + + +D +T+ WD P+ + ++
Sbjct: 116 SSNQAIQ-IAQHDAP--VKTIHWIKAPNYSCVM-TGSWD-KTLKFWDTRSSNPMMVLQLP 170
Query: 630 RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666
+ + ++ +Y L E ++
Sbjct: 171 E-RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRR 206
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 4e-36
Identities = 45/411 (10%), Positives = 99/411 (24%), Gaps = 106/411 (25%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSG-RFVITGSDDRLVKIWSMET--AFCLASCRGHEG 286
++ + + V + + V GS + +W + G
Sbjct: 60 LKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGD 119
Query: 287 DITDLAVSSNN-TLVASASNDFVIRVWRLPDGLP--ISVLRGHTGAVTAIAFSPRPSAIY 343
IT + + N + +S + + + + S
Sbjct: 120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQ--- 176
Query: 344 QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--IL 401
L + G + G + H+ +
Sbjct: 177 MLATGDSTGRLLLLGLD------------------GH----------EIFKEKLHKAKVT 208
Query: 402 CCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460
+N + T S D ++W + + + HE VN F
Sbjct: 209 HAEFNPRCDWLMATSSVDATVKLWDL------RNIKDKNSYIAEMPHEKPVNAAYF---- 258
Query: 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW------IPRSRRSHG-KVG 513
+ ++T + ++ P H +
Sbjct: 259 ---------------------NPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297
Query: 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 573
+ + P ++ + +L I +++
Sbjct: 298 QHLTPI--------------------KATWHPMYDLIVAGRYPDDQLLLN-DKRTIDIYD 336
Query: 574 AVDGSLVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTIVWDIWEGT 621
A G LVH L +A+ + F+P +A +G ++W+ E T
Sbjct: 337 ANSGGLVHQLRDPNAAGIISLNK-FSPTGDVLA--SGMGFNILIWNR-EDT 383
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 5e-33
Identities = 61/443 (13%), Positives = 114/443 (25%), Gaps = 132/443 (29%)
Query: 238 KLRGHRDAVYCAIFDRSGRFVITG--SDDRLVKIWSMETAFCLASCRGHEGDITDLAVS- 294
K G ++ G+ + + I S+++ + + +T L
Sbjct: 24 KKVGQTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSYKLHRTASPFDRRVTSLEWHP 83
Query: 295 SNNTLVASASNDFVIRVWRLPDGLPISV--LRGHTGAVTAIAFSPRPSAIYQLLSSSDDG 352
++ T VA S I +W S G A+T + F+ + QL SS G
Sbjct: 84 THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTN--QLFVSSIRG 141
Query: 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGT 410
+ D S + S C + +
Sbjct: 142 ATTLRDF-------------------------SGSVIQVFAKTDSWDYWYCCVDVSVSRQ 176
Query: 411 VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470
+ TG S + D + + H+ V + +F+
Sbjct: 177 MLATGDSTGRLLLLGL------DGHE----IFKEKLHKAKVTHAEFN------------- 213
Query: 471 FKEENVPKFKNSWFCHDN---IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPP 527
+ T S D + +W R+ +
Sbjct: 214 ---------------PRCDWLMATSSVDATVKLWDLRNIKDKNSY--------------- 243
Query: 528 LPPQPPRGGPRQRLLPTPRGVNMIVWS-LDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH 586
+P + VN ++ D+ +L I V+++ D S + H
Sbjct: 244 -----------IAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH 292
Query: 587 S----ASSYVLDVH--PFNPRIAMSAGYDGRTI--------VWDIWEGTPIRIYEIGRFK 632
+ P I D + + ++D G + +
Sbjct: 293 PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVH-------Q 345
Query: 633 LVDG---------KFSPDGTSIV 646
L D KFSP G +
Sbjct: 346 LRDPNAAGIISLNKFSPTGDVLA 368
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 5e-09
Identities = 35/342 (10%), Positives = 81/342 (23%), Gaps = 105/342 (30%)
Query: 317 GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDA 376
G T + I S +I+ L I + S +++
Sbjct: 19 RTGGQKKVGQTSILHYIYKSSLGQSIHAQLRQCLQ-EPFIRSLK----SYKLHRT----- 68
Query: 377 ITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYN-ANGTVFVTGSSDTFARVWSACKSSVED 433
+ ++ + T GS +W D
Sbjct: 69 ------------------ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDY------D 104
Query: 434 SEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS 493
+ G + + ++F+ + + + S
Sbjct: 105 VQNKTS-FIQGMGPGDAITGMKFNQ---------FNTNQ----------------LFVSS 138
Query: 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW 553
G+ + ++ +
Sbjct: 139 IRGATTLRDFSGSVI-------------------------------QVFAKTDSWDYWYC 167
Query: 554 SL----DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYD 609
+ + + R+ + +DG + H A + +P + ++ D
Sbjct: 168 CVDVSVSRQMLATGDSTGRLLLLG-LDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD 226
Query: 610 GRTI-VWDIWEGTPIR--IYEIGRFKLVDG-KFSP-DGTSIV 646
T+ +WD+ I E+ K V+ F+P D T ++
Sbjct: 227 -ATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLL 267
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 3e-08
Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 11/137 (8%)
Query: 538 RQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGS--LVHSLTGHSASSYVLD 594
+ P R V + W + +A I +W+ + G + +
Sbjct: 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMK 125
Query: 595 VHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE-----IGRFKLVDGKFSPDGTSIVLSD 649
+ FN + G T + D + G+ I+++ + VD S + D
Sbjct: 126 FNQFNTNQLFVSSIRGATTLRD-FSGSVIQVFAKTDSWDYWYCCVD--VSVSRQMLATGD 182
Query: 650 DVGQIYLLNTGQGESQK 666
G++ LL E K
Sbjct: 183 STGRLLLLGLDGHEIFK 199
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 12/111 (10%), Positives = 35/111 (31%), Gaps = 15/111 (13%)
Query: 546 RGVNMIVWS-LDNRFVLAAIMDCRICVWNAVDGS--LVHSLTGHSASSYVLDVHPFNPRI 602
+ + ++ + + + + + + + +DV +
Sbjct: 119 DAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQML 178
Query: 603 AMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGK-----FSPDGTSIVLS 648
A + GR ++ + +EI + KL K F+P ++ +
Sbjct: 179 A-TGDSTGRLLLLGL------DGHEIFKEKLHKAKVTHAEFNPRCDWLMAT 222
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 7e-04
Identities = 21/137 (15%), Positives = 41/137 (29%), Gaps = 6/137 (4%)
Query: 520 HLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI--MDCRICVWNAVDG 577
H L Q Q+ + ++ I S + + A + + +
Sbjct: 4 HHHHVDENLYFQGGGRTGGQKKVGQTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSY 63
Query: 578 SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE-IGRFKLVDG 636
L + + L+ HP +P G I+WD + +G + G
Sbjct: 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITG 123
Query: 637 -KFSP-DGTSIV-LSDD 650
KF+ + + S
Sbjct: 124 MKFNQFNTNQLFVSSIR 140
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 1e-35
Identities = 47/397 (11%), Positives = 91/397 (22%), Gaps = 130/397 (32%)
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET-----AFCLASCRGHEGDITDLAVSS 295
H + V R V TG VK+W + C + I +
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 296 NNTLVASASNDFVIRVWRL--PDGLPISVLRGHTGAVTAIAFSP--RPSAIYQLLSSSDD 351
+ + + +W L P + L A A+A SP + S D
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-----VCFSCCSD 162
Query: 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANG 409
G +WD Q H C + +G
Sbjct: 163 GNIAVWDLH-----------------NQTLVRQ----------FQGHTDGASCIDISNDG 195
Query: 410 TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSD 469
T TG D R W + + + + + ++
Sbjct: 196 TKLWTGGLDNTVRSWDL------REGRQLQQH----DFTSQIF-------SLG------- 231
Query: 470 AFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPP 527
+C + + + +
Sbjct: 232 --------------YCPTGEWLAVGMESSNVEVLHVNKPDKY------------------ 259
Query: 528 LPPQPPRGGPRQRLLPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL 583
V + ++ ++ ++ D + W G+ +
Sbjct: 260 ----------------QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-Q 302
Query: 584 TGHSASSYVLDVHPFNP---RIAMSAGYDGRTIVWDI 617
+ SS VL + I + D + V+++
Sbjct: 303 SKE--SSSVLSCD-ISVDDKYIV-TGSGDKKATVYEV 335
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 6e-35
Identities = 30/239 (12%), Positives = 62/239 (25%), Gaps = 50/239 (20%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
+ +L A Y + + D + +W + + +GH + + +
Sbjct: 132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 191
Query: 294 SSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP--RPSAIYQLLSSSDD 351
S++ T + + D +R W L +G + T + ++ + P L +
Sbjct: 192 SNDGTKLWTGGLDNTVRSWDLREGRQLQ-QHDFTSQIFSLGYCPTGE-----WLAVGMES 245
Query: 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANG 409
+ L H+ +L + G
Sbjct: 246 SNVEVLHVN-----------------KPDKYQ-----------LHLHESCVLSLKFAYCG 277
Query: 410 TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVASRSA 466
FV+ D W I S + V S + + S
Sbjct: 278 KWFVSTGKDNLLNAWRT------PYGASIF----QSKESSSVLSCDISVDDKYIVTGSG 326
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 7e-35
Identities = 55/427 (12%), Positives = 98/427 (22%), Gaps = 126/427 (29%)
Query: 239 LRGH--RDAVYCAIFDRSGRFVIT-GSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
+G Y G+ D L+ A + + H + + +S+
Sbjct: 3 FQGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISN 61
Query: 296 NNTLVASASNDFVIRVWRLPDG-----LPISVLRGHTGAVTAIAFSP--RPSAIYQLLSS 348
V + ++VW + + + + P L+
Sbjct: 62 PTRHVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC-----TLIVG 115
Query: 349 SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYN 406
+ T IWD A T + L S A +
Sbjct: 116 GEASTLSIWDL---------------AAPTPRIKAE----------LTSSAPACYALAIS 150
Query: 407 ANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSA 466
+ V + SD VW ++ + GH + + + S
Sbjct: 151 PDSKVCFSCCSDGNIAVWDL------HNQTLVR---QFQGHTDGASCIDIS--------- 192
Query: 467 MSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVP 524
+D + T D + W R R +
Sbjct: 193 -------------------NDGTKLWTGGLDNTVRSWDLREGRQLQQHD------F---- 223
Query: 525 PPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT 584
+ + + ++ + + V + + L
Sbjct: 224 --------------------TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLH 262
Query: 585 GHSASSYVLDVHPFNP---RIAMSAGYDGRTI-VWDIWEGTPIRIY-EIGRFKLVDGKFS 639
H S VL + F S G D + W G I E D S
Sbjct: 263 LH--ESCVLSLK-FAYCGKWFV-STGKD-NLLNAWRTPYGASIFQSKESSSVLSCD--IS 315
Query: 640 PDGTSIV 646
D IV
Sbjct: 316 VDDKYIV 322
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 1e-34
Identities = 43/270 (15%), Positives = 72/270 (26%), Gaps = 75/270 (27%)
Query: 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSME--TAFCLASCRGHEGDITDLAVSS 295
+ + G +I G + + IW + T A LA+S
Sbjct: 92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151
Query: 296 NNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP--RPSAIYQLLSSSDDGT 353
++ + S +D I VW L + + +GHT + I S +L + D T
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT-----KLWTGGLDNT 206
Query: 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFV 413
R WD R G+ + + QI Y G
Sbjct: 207 VRSWDLR-----------------EGR--------QLQQHD-FTSQIFSLGYCPTGEWLA 240
Query: 414 TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473
G + V + L HE+ V ++F+
Sbjct: 241 VGMESSNVEVLHV------NKPDKY----QLHLHESCVLSLKFA---------------- 274
Query: 474 ENVPKFKNSWFCHDN--IVTCSRDGSAIIW 501
+ V+ +D W
Sbjct: 275 ------------YCGKWFVSTGKDNLLNAW 292
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 3e-32
Identities = 33/199 (16%), Positives = 54/199 (27%), Gaps = 39/199 (19%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDIT 289
+ +++ +GH D C G + TG D V+ W + L I
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDFTSQIF 228
Query: 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP--RPSAIYQLLS 347
L +A + V + L H V ++ F+ + +S
Sbjct: 229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGK-----WFVS 282
Query: 348 SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAY 405
+ D W Y S +L C
Sbjct: 283 TGKDNLLNAWRTPYGA----------------------------SIFQSKESSSVLSCDI 314
Query: 406 NANGTVFVTGSSDTFARVW 424
+ + VTGS D A V+
Sbjct: 315 SVDDKYIVTGSGDKKATVY 333
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 3e-26
Identities = 18/126 (14%), Positives = 43/126 (34%), Gaps = 9/126 (7%)
Query: 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNN 297
+ ++ + +G ++ G + V++ + HE + L +
Sbjct: 219 QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCG 277
Query: 298 TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP--RPSAIYQLLSSSDDGTCR 355
S D ++ WR P G I + +V + S + +++ S D
Sbjct: 278 KWFVSTGKDNLLNAWRTPYGASI-FQSKESSSVLSCDISVDDK-----YIVTGSGDKKAT 331
Query: 356 IWDARY 361
+++ Y
Sbjct: 332 VYEVIY 337
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 2e-35
Identities = 43/422 (10%), Positives = 100/422 (23%), Gaps = 98/422 (23%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASC-RGHEGDITDLAVS 294
+ H ++ F ++ S D +K+W + + + + +
Sbjct: 9 ANAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 66
Query: 295 SNNT------------------------LVASASNDFVIRVWRLPDGLPISVLRGHTGAV 330
+ D +V L S ++ H+
Sbjct: 67 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 126
Query: 331 TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPS 390
S ++L+++ GT IW + + V S PS
Sbjct: 127 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 186
Query: 391 SSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV---LSGH 447
+ G + TG ++ ++ + +P++ + + +
Sbjct: 187 QF-------ATSVDISERGLI-ATGFNNGTVQISEL------STLRPLYNFESQHSMINN 232
Query: 448 ENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAI---IWI 502
N + V+FS + S ++
Sbjct: 233 SNSIRSVKFS----------------------------PQGSLLAIAHDSNSFGCITLYE 264
Query: 503 PRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA 562
G L VP V + ++ + +
Sbjct: 265 TEFGERIGS---------LSVPTHSSQASLGEFAHS-------SWVMSLSFNDSGETLCS 308
Query: 563 AIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVH-PFNP---RIAMSAGYDGRTIVWDIW 618
A D ++ W+ + +L H + + + +A G + W
Sbjct: 309 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA-EPGVFDVKFLKKGW 367
Query: 619 EG 620
Sbjct: 368 RS 369
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-22
Identities = 27/264 (10%), Positives = 66/264 (25%), Gaps = 57/264 (21%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
Q I++ V F F +D K+ + + + H
Sbjct: 72 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 131
Query: 294 SSNNTL---VASASNDFVIRVWRLPDG------------------LPISVLRGHTGAVTA 332
S++ L + + +W+ + + T+
Sbjct: 132 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 191
Query: 333 IAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392
+ S R + + ++GT +I + T + + S
Sbjct: 192 VDISERG----LIATGFNNGTVQISELS-----------------TLRPLYNFESQHS-- 228
Query: 393 NGLQSHQ--ILCCAYNANGTVFVTGSSDTFA---RVWSA----CKSSVEDSEQPIHELDV 443
+ ++ I ++ G++ ++ S+
Sbjct: 229 --MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG 286
Query: 444 LSGHENDVNYVQFS--GCAVASRS 465
H + V + F+ G + S
Sbjct: 287 EFAHSSWVMSLSFNDSGETLCSAG 310
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 96.0 bits (239), Expect = 9e-21
Identities = 27/155 (17%), Positives = 49/155 (31%), Gaps = 30/155 (19%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCL------ASCRG 283
++ ++ G TG ++ V+I + T L S
Sbjct: 173 LELQGTVESPMTPSQFATSVDISERGLIA-TGFNNGTVQISELSTLRPLYNFESQHSMIN 231
Query: 284 HEGDITDLAVSSNNTLVASASND---FVIRVWRLPDGLPISVL-------------RGHT 327
+ I + S +L+A A + I ++ G I L H+
Sbjct: 232 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 291
Query: 328 GAVTAIAFSP--RPSAIYQLLSSSDDGTCRIWDAR 360
V +++F+ L S+ DG R WD +
Sbjct: 292 SWVMSLSFNDSGE-----TLCSAGWDGKLRFWDVK 321
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 3e-19
Identities = 18/154 (11%), Positives = 43/154 (27%), Gaps = 26/154 (16%)
Query: 229 MVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDR---LVKIWSMETAFCLAS----- 280
+ ++ + + +++ F G + D + ++ E + S
Sbjct: 219 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 278
Query: 281 --------CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAV-- 330
H + L+ + + + SA D +R W + I+ L H +
Sbjct: 279 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI 338
Query: 331 --TAIAFSPRPSAIYQLLSSSDDGTC---RIWDA 359
+A L + W +
Sbjct: 339 EEDILAVDEHGD---SLAEPGVFDVKFLKKGWRS 369
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 8e-16
Identities = 35/371 (9%), Positives = 80/371 (21%), Gaps = 101/371 (27%)
Query: 320 ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITG 379
+ + H + +++ +S S DG ++WD +
Sbjct: 9 ANAGKAHDADIFSVSACNS-----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 63
Query: 380 KSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIH 439
+ + + + +++ + + D +V ++ +
Sbjct: 64 GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIF---EKLDLLDSD-- 118
Query: 440 ELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAI 499
+ H S + S +V G+
Sbjct: 119 ----MKKHSFWALKWGASNDRLLSHR-----------------------LVATDVKGTTY 151
Query: 500 IWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRF 559
IW + L++ G + + + + S
Sbjct: 152 IWKFHPFADESNSLTLNWSPTLEL-----------QGTVESPMTPSQFATSVDISERGLI 200
Query: 560 VLAAIMDCRICVWNAVDGSLV------HSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTI 613
+ + + + HS+ +S S
Sbjct: 201 ATGF-NNGTVQISELSTLRPLYNFESQHSMINNSNS------------------------ 235
Query: 614 VWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVL-SDD--VGQIYLLNTGQGESQKDAKY 670
+ + KFSP G+ + + D G I L T GE
Sbjct: 236 IRSV-------------------KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSV 276
Query: 671 DQFFLGDYRPL 681
Sbjct: 277 PTHSSQASLGE 287
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 1e-13
Identities = 25/144 (17%), Positives = 42/144 (29%), Gaps = 28/144 (19%)
Query: 223 IAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR 282
I S Q H V F+ SG + + D ++ W ++T + +
Sbjct: 271 IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330
Query: 283 GHEGDITD----LAVSSNNTLVASASND---FVIRVWRLPDGLPISVLRGHTGAVTAIAF 335
H DI LAV + +A F+ + WR G ++
Sbjct: 331 MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNES------------ 378
Query: 336 SPRPSAIYQLLSSSDDGTCRIWDA 359
L D + R +
Sbjct: 379 ---------LCCVCLDRSIRWFRE 393
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 4e-08
Identities = 31/253 (12%), Positives = 57/253 (22%), Gaps = 61/253 (24%)
Query: 434 SEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS 493
S+ I + H+ D+ V V+CS
Sbjct: 2 SKVFIATANAGKAHDADIFSVSACN----------------------------SFTVSCS 33
Query: 494 RDGSAIIWIPRSRRSHGKV--GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMI 551
DG +W + + + + + R L+ T
Sbjct: 34 GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT------T 87
Query: 552 VWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHS--ASSYVLDVHPFNPRIAMSAGYD 609
+S D F D V L + HS A + ++
Sbjct: 88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK 147
Query: 610 GRTIVWDIWEGTPIRIYEIGRFKLVDGK-------------------FSPDGTSIVLSDD 650
G T +W + + S G ++
Sbjct: 148 GTTYIWKFHPFADESNSLTLNWS-PTLELQGTVESPMTPSQFATSVDISERGLIATGFNN 206
Query: 651 VGQIYL--LNTGQ 661
G + + L+T +
Sbjct: 207 -GTVQISELSTLR 218
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 3e-34
Identities = 58/416 (13%), Positives = 120/416 (28%), Gaps = 131/416 (31%)
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASC-RGHEGDITDLAVSSNNTL 299
G D Y + D S V+ + +R V +W+ ++ A + + S + +
Sbjct: 89 GIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSF 148
Query: 300 VASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
++ + ++ ++ + + + GH V ++++ L S S G D
Sbjct: 149 LSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH-----VLSSGSRSGAIHHHDV 203
Query: 360 RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGTVFVTGSS 417
R + + LQ H + A+ ++G +G +
Sbjct: 204 R-----------------IANHQIGT---------LQGHSSEVCGLAWRSDGLQLASGGN 237
Query: 418 DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477
D ++W A S P + H V AVA
Sbjct: 238 DNVVQIWDA------RSSIPKF---TKTNHNAAVK-------AVA--------------- 266
Query: 478 KFKNSWFCHD--NIVTC---SRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQP 532
+C N++ + D W +
Sbjct: 267 ------WCPWQSNLLATGGGTMDKQIHFWNAAT--------------------------- 293
Query: 533 PRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI--MDCRICVWNAVDGSLVH--SLTGHSA 588
G R + V ++WS ++ +++ D + +W+ L + H
Sbjct: 294 ---GARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHD- 349
Query: 589 SSYVLDVHPFNPRIAMSAGYDGRTIV----------WDIWEGTPIRIYEIGRFKLV 634
+ VL A+S DGR + W +++G ++
Sbjct: 350 -TRVLYS-------ALSP--DGRILSTAASDENLKFWRVYDGDHVKRPIPITKTPS 395
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 3e-34
Identities = 44/246 (17%), Positives = 89/246 (36%), Gaps = 48/246 (19%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA-FCLASCRGHEGDI 288
V+ ++ + GH+ V C ++ + +GS + + A + + +GH ++
Sbjct: 163 VESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV 220
Query: 289 TDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348
LA S+ +AS ND V+++W +P H AV A+A+ P S +
Sbjct: 221 CGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG 280
Query: 349 SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQS----HQILCCA 404
+ D W+A TG + + Q+
Sbjct: 281 TMDKQIHFWNAA-----------------TGAR-------------VNTVDAGSQVTSLI 310
Query: 405 YNANGTVFVT--GSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCA 460
++ + ++ G D +WS S ++D + H+ V Y S G
Sbjct: 311 WSPHSKEIMSTHGFPDNNLSIWSY------SSSGLTKQVD-IPAHDTRVLYSALSPDGRI 363
Query: 461 VASRSA 466
+++ ++
Sbjct: 364 LSTAAS 369
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 7e-24
Identities = 62/424 (14%), Positives = 114/424 (26%), Gaps = 132/424 (31%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
LR + + + R T + ++ G D + +N
Sbjct: 58 LRTQHNRPQRPVVTPAKRRFNTTPE----RVLDAP---------GIIDDYYLNLLDWSNL 104
Query: 299 LVASASNDFVIRVWRLPDGLPISVL-RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357
V + + + + VW G ++ + V ++ +S S L +G I+
Sbjct: 105 NVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGS---FLSVGLGNGLVDIY 161
Query: 358 DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANGTVFVTG 415
D + + HQ + C ++N V +G
Sbjct: 162 DVE-----------------SQTKLRT----------MAGHQARVGCLSWN--RHVLSSG 192
Query: 416 SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475
S D H++ L GH ++V + +
Sbjct: 193 SRSGAIHHH--------DVRIANHQIGTLQGHSSEVCGLAWR------------------ 226
Query: 476 VPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPP 533
D + + D IW RS
Sbjct: 227 ----------SDGLQLASGGNDNVVQIWDARS---------------------------- 248
Query: 534 RGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI---MDCRICVWNAVDGSLVHSLTGHSASS 590
P+ V + W +LA MD +I WNA G+ V+++ S
Sbjct: 249 -SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS--- 304
Query: 591 YVLDVHPFNP---RIAMSAGYDGRTI-VWDIWEGTPIRIYEI----GRFKLVDGKFSPDG 642
V + ++P I + G+ + +W + +I R SPDG
Sbjct: 305 QVTSLI-WSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSA--LSPDG 361
Query: 643 TSIV 646
+
Sbjct: 362 RILS 365
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 4e-22
Identities = 35/229 (15%), Positives = 75/229 (32%), Gaps = 46/229 (20%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
I L+GH V + G + +G +D +V+IW ++ + H + +A
Sbjct: 208 HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAW 267
Query: 294 SSN-NTLVASA--SNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS-- 348
+ L+A+ + D I W G ++ + + VT++ +SP + + S
Sbjct: 268 CPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ-VTSLIWSPH----SKEIMSTH 322
Query: 349 -SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAY 405
D IW + + + +H +L A
Sbjct: 323 GFPDNNLSIWSYS-----------------SSG--------LTKQVDIPAHDTRVLYSAL 357
Query: 406 NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV 454
+ +G + T +SD + W + + + + +
Sbjct: 358 SPDGRILSTAASDENLKFWRV------YDGDHVKRP--IPITKTPSSSI 398
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 2e-15
Identities = 42/368 (11%), Positives = 97/368 (26%), Gaps = 116/368 (31%)
Query: 291 LAVSSNNTLVASASNDFVIRVWRLPDGLPISVL--RGHTGAVTAIAFSPRPSAIYQLLSS 348
+ + + + R + + P VL G +++
Sbjct: 56 VDLRTQHNRPQRPVVTPAKRRF---NTTPERVLDAPGIIDDYYLNLLDWSNL---NVVAV 109
Query: 349 SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN 408
+ + +W+A +G + + S+ + ++ +
Sbjct: 110 ALERNVYVWNAD-----------------SGSVSALAETDESTY-------VASVKWSHD 145
Query: 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468
G+ G + ++ +S+ + ++GH+ V + ++ ++S
Sbjct: 146 GSFLSVGLGNGLVDIYDV------ESQTKLR---TMAGHQARVGCLSWNRHVLSS----- 191
Query: 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPL 528
SR G+ R L
Sbjct: 192 -----------------------GSRSGAIHHHDVRIANHQIG---------------TL 213
Query: 529 PPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSA 588
G V + W D + + D + +W+A + T H+A
Sbjct: 214 Q------GHSS-------EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA 260
Query: 589 SSYVLDVHPFNPRIAMSAG--YDGRTI-VWDIWEGTPIRIYEIGRFKLVDGK-------F 638
+ + P+ + + G D + I W+ G + VD +
Sbjct: 261 AVKAVAWCPWQSNLLATGGGTMD-KQIHFWNAATGARVNT--------VDAGSQVTSLIW 311
Query: 639 SPDGTSIV 646
SP I+
Sbjct: 312 SPHSKEIM 319
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 2e-11
Identities = 17/107 (15%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVIT--GSDDRLVKIWSMETAFCL--ASCRGHEGDIT 289
+ + V I+ + +++ G D + IWS ++ H+ +
Sbjct: 295 ARVNTVDAGSQ-VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVL 353
Query: 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLPIS-VLRGHTGAVTAIAF 335
A+S + ++++A++D ++ WR+ DG + + ++I
Sbjct: 354 YSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPITKTPSSSITI 400
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 4e-04
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 14/105 (13%)
Query: 552 VWSL--DNRFVLAAIMDCRICVWNAVDG-SLVHSLTGHSASSYVLDVHPFNP---RIAMS 605
V L + + + I + + +L GHS S V + + ++A S
Sbjct: 179 VGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHS--SEVCGLA-WRSDGLQLA-S 234
Query: 606 AGYDGRTIVWDIWEGTPIRIYE--IGRFKLVDGKFSPDGTSIVLS 648
G D +WD P K V + P ++++ +
Sbjct: 235 GGNDNVVQIWDARSSIPKFTKTNHNAAVKAVA--WCPWQSNLLAT 277
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 8e-34
Identities = 51/422 (12%), Positives = 117/422 (27%), Gaps = 127/422 (30%)
Query: 239 LRGHRDAVYCAIFDRSGRFVIT----GSDDRLVKIWSMETAFCLASCRGHEGD----ITD 290
+G V+ + +T +++++ ++ + T
Sbjct: 14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTF 73
Query: 291 LAVSSNNTLVASASNDFVIRVWRLPDG-LPISVLRGHTGAVTAI------AFSPRPSAIY 343
A S +A+ + +W L +P+ ++GH + AI
Sbjct: 74 GATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP--- 130
Query: 344 QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCC 403
++++ S DGT ++WD R P + V
Sbjct: 131 EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV----------------AFGN 174
Query: 404 AYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVAS 463
AYN V G + +++ + E +N V ++F ++
Sbjct: 175 AYNQEERVVCAGYDNGDIKLFDL------RNMALRWET----NIKNGVCSLEFDRKDISM 224
Query: 464 RSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523
+V S +G ++ R++
Sbjct: 225 N-----------------------KLVATSLEGKFHVFDMRTQ----------------- 244
Query: 524 PPPPLPPQPPRGGPRQRLLPTPRG----VNMIVWSLDNRFVLA-AIMDCRICVWN----- 573
P +G + + V + NR + A + +W
Sbjct: 245 -------HPTKG----FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293
Query: 574 --------------AVDGSLVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTI-VW 615
A SL+ ++T + + + ++P + + + +D +T+ V
Sbjct: 294 QRSKKDSEGIEMGVAGSVSLLQNVTLS--TQPISSLD-WSPDKRGLCVCSSFD-QTVRVL 349
Query: 616 DI 617
+
Sbjct: 350 IV 351
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 6e-31
Identities = 30/252 (11%), Positives = 81/252 (32%), Gaps = 51/252 (20%)
Query: 234 QNIKKLRGHRDAVYCAIFDRS------GRFVITGSDDRLVKIWSMETAFCLASC----RG 283
+ ++GH++ + ++TGS D VK+W + +G
Sbjct: 102 MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG 161
Query: 284 HEGD-----ITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPR 338
A + +V + ++ I+++ L + V ++ F +
Sbjct: 162 ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRK 220
Query: 339 PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH 398
++ +L+++S +G ++D R G ++V ++H
Sbjct: 221 DISMNKLVATSLEGKFHVFDMRTQH------------PTKGFASVS----------EKAH 258
Query: 399 Q--ILCCAYNANG-TVFVTGSSDTFARVWSA----CKSSVEDSEQPI------HELDVLS 445
+ + + +F+T +W +S + + L ++
Sbjct: 259 KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT 318
Query: 446 GHENDVNYVQFS 457
++ + +S
Sbjct: 319 LSTQPISSLDWS 330
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-25
Identities = 44/373 (11%), Positives = 97/373 (26%), Gaps = 105/373 (28%)
Query: 238 KLRGHRDAVYCAIFD---RSGRFVITGSDDRLVKIWSMETAFC-LASCRGHEGDIT---- 289
+ + C F R++ TG + IW++E + S +GH+ I
Sbjct: 60 REIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDG 119
Query: 290 --DLAVSSNNTLVASASNDFVIRVWRLPDGLPISV----LRGHTGA-----VTAIAFSP- 337
L + + + S D ++VW ++G A++
Sbjct: 120 IGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQE 179
Query: 338 -RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396
R + + D+G +++D R +N
Sbjct: 180 ER-----VVCAGYDNGDIKLFDLR-----------------NMALRWETN---------I 208
Query: 397 SHQILCCAYNANGTV---FVTGSSDTFARVWSACKSSVEDSEQPIH--ELDVLSGHENDV 451
+ + ++ V S + V+ ++ P H++ V
Sbjct: 209 KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM------RTQHPTKGFASVSEKAHKSTV 262
Query: 452 NYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN---IVTCSRDGSAIIWIPRSRRS 508
V+ N +T G +W +
Sbjct: 263 WQVRHL----------------------------PQNRELFLTAGGAGGLHLW--KYEYP 292
Query: 509 HGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA-AIMDC 567
+ + + + V Q + ++ + WS D R + + D
Sbjct: 293 IQRSKKDSEGIEMGVAGSVSLLQNVTLS--------TQPISSLDWSPDKRGLCVCSSFDQ 344
Query: 568 RICVWNAVDGSLV 580
+ V + +
Sbjct: 345 TVRVLIVTKLNKI 357
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-23
Identities = 46/341 (13%), Positives = 100/341 (29%), Gaps = 90/341 (26%)
Query: 322 VLRGHTGAVTAIAFSPRPSAIYQLLSS-SDDGTCRIWDARYSQYSPRIYLPKPPDAITGK 380
+ +G V + P + + + G ++++ + G
Sbjct: 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQ-----------------HGD 55
Query: 381 SNVPSNNGPSSSNGLQSHQILCC---AYNANGTVFVTGSSDTFARVWSACKSSVEDSEQP 437
+ ++ I C A + TG +W ++E E P
Sbjct: 56 LKLLREIE-------KAKPIKCGTFGATSLQQRYLATGDFGGNLHIW-----NLEAPEMP 103
Query: 438 IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRD 495
++ + GH+ +N + G IVT SRD
Sbjct: 104 VY---SVKGHKEIINAIDGIGGLGIG----------------------EGAPEIVTGSRD 138
Query: 496 GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL 555
G+ +W PR + +P +G ++ G ++
Sbjct: 139 GTVKVWDPRQKDDPVANM-----------------EPVQGENKRDCWTVAFGNA---YNQ 178
Query: 556 DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRT 612
+ R V A + I +++ + +L T L+ + ++ + +G+
Sbjct: 179 EERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLV-ATSLEGKF 236
Query: 613 IVWDIWEGTPIRIYEIGRFK----LVDG-KFSPDGTSIVLS 648
V+D+ P + + K V + P + L+
Sbjct: 237 HVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLT 277
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 50/408 (12%), Positives = 101/408 (24%), Gaps = 124/408 (30%)
Query: 282 RGHEGDITDLAVSSNNTLVAS----ASNDFVIRVWRLPDGLPISVLRGHTG----AVTAI 333
+G + D + + A VI+++ + G + T
Sbjct: 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFG 74
Query: 334 AFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITG-KSNVPSNNGPSSS 392
A S + L + G IW+ + P ++ G K + + +G
Sbjct: 75 ATSLQQR---YLATGDFGGNLHIWNLEAPE--------MPVYSVKGHKEIINAIDGIGGL 123
Query: 393 NGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN-DV 451
VTGS D +VW + P+ ++ + G D
Sbjct: 124 -----------GIGEGAPEIVTGSRDGTVKVWD-----PRQKDDPVANMEPVQGENKRDC 167
Query: 452 NYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSH 509
V F + + + +G ++
Sbjct: 168 WTVAFGNA------------------------YNQEERVVCAGYDNGDIKLF-------- 195
Query: 510 GKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS---LDNRFVLAAIMD 566
R + GV + + + ++A ++
Sbjct: 196 ----------------------DLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLE 233
Query: 567 CRICVWNA-----VDGSLVHSLTGHSASSYVLDV--HPFNPRIAMSAGYDGRTIVWDIWE 619
+ V++ G S H S V V P N + ++AG G +W
Sbjct: 234 GKFHVFDMRTQHPTKGFASVSEKAHK--STVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291
Query: 620 GTPIRIYEIGRFKLVDGK-------------------FSPDGTSIVLS 648
+ ++ +SPD + +
Sbjct: 292 PIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVC 339
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-22
Identities = 24/154 (15%), Positives = 53/154 (34%), Gaps = 30/154 (19%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSG---RFVITGSDDRLVKIWSMETA-----FCLASCRGHE 285
++ ++ V FDR ++ S + ++ M T F S + H+
Sbjct: 200 MALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHK 259
Query: 286 GDITDLAVSSNN-TLVASASNDFVIRVWRL----------PDGLPISV---------LRG 325
+ + N L +A + +W+ +G+ + V +
Sbjct: 260 STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL 319
Query: 326 HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
T ++++ +SP + + SS D T R+
Sbjct: 320 STQPISSLDWSPDKRGL--CVCSSFDQTVRVLIV 351
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 30/257 (11%), Positives = 57/257 (22%), Gaps = 82/257 (31%)
Query: 430 SVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVASRSAMSDAFKEENVPKFKNSWFCHD 487
S + Q I + G V ++ + +
Sbjct: 2 SAFEKPQIIAH--IQKGFNYTVFDCKWVPCSAKFVTMGNFA------------------- 40
Query: 488 NIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG 547
G ++ + L + +
Sbjct: 41 -----RGTGVIQLYEIQHGD--------------------LKLLREIEKAKPI-----KC 70
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGS-LVHSLTGHSASSYVLDVHP---FNP--- 600
SL R++ + +WN V+S+ GH +D
Sbjct: 71 GTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP 130
Query: 601 RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDG-------------KFSPDGTSIVL 647
I + DG VWD + + + V G ++ + +
Sbjct: 131 EIV-TGSRDGTVKVWDPRQKDDP----VANMEPVQGENKRDCWTVAFGNAYNQEERVVCA 185
Query: 648 -SDDVGQIYL--LNTGQ 661
D+ G I L L
Sbjct: 186 GYDN-GDIKLFDLRNMA 201
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 5e-30
Identities = 51/415 (12%), Positives = 104/415 (25%), Gaps = 88/415 (21%)
Query: 236 IKKLRGHR-DAVYC-AIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR-----GHEGDI 288
I L + +++ A+ ++ITGSD ++KIW+++ +
Sbjct: 55 IATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTV 114
Query: 289 TDLAVSSNNTLVASASNDFVIRVWRLPDG----------------LPISVLRGHTGAVTA 332
T + + N A +S D I V ++ + + + AV
Sbjct: 115 TQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRM 174
Query: 333 IAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392
AF ++ L++ ++ I+D R T + +
Sbjct: 175 RAFVNEEKSL--LVALTNLSRVIIFDIR-----------------TLE-RLQIIENSPRH 214
Query: 393 NGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVN 452
+ + V + G++ +W I G +
Sbjct: 215 GA-----VSSICIDEECCVLILGTTRGIIDIWDI------RFNVLIRSW--SFGDHAPIT 261
Query: 453 YVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKV 512
+V KNS +V S IW G
Sbjct: 262 HV----EVCQFYG--------------KNSVI----VVGGSSKTFLTIWNFVK----GHC 295
Query: 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 572
+ P + +++ +L I ++
Sbjct: 296 QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMF 355
Query: 573 NAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE 627
+ + S ++ S S V F P +A +
Sbjct: 356 SLNELSSSKAVISPSRFSDV-----FIPTQV-TANLTMLLRKMKRTSTHSVDDSL 404
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 8e-29
Identities = 42/413 (10%), Positives = 102/413 (24%), Gaps = 110/413 (26%)
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR----------------GH 284
V + S D + + + + + +
Sbjct: 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKN 168
Query: 285 EGDITDLAVSSNN-TLVASASNDFVIRVWRLPDGLPISVLRG--HTGAVTAIAFSPRPSA 341
E + A + +L+ + +N + ++ + + ++ GAV++I
Sbjct: 169 EYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECC- 227
Query: 342 IYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQIL 401
L+ + G IWD R++ I D + +H +
Sbjct: 228 --VLILGTTRGIIDIWDIRFNV---LIRSWSFGD-----------------HAPITHVEV 265
Query: 402 CCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GC 459
C Y N + V GSS TF +W+ K + + F
Sbjct: 266 CQFYGKNSVIVVGGSSKTFLTIWNFVKGHC---------QYAFINSDEQPSMEHFLPIEK 316
Query: 460 AVASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTR 517
+ + ++ ++ ++T S +++
Sbjct: 317 GLEELNFCGIRSLNA-----LSTISVSNDKILLTDEATSSIVMF---------------- 355
Query: 518 AYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG 577
+ + +P + + + A + +
Sbjct: 356 --------------SLNELSSSKAVISPSRFSDVFIPTQ----VTANLTMLLRKMKRTST 397
Query: 578 SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIV---WDIWEGTPIRIYE 627
V H + + + + +V G I I++
Sbjct: 398 HSVDDSLYH--HDIINSI-------STCEVDETPLLVACDNS---GL-IGIFQ 437
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-27
Identities = 35/289 (12%), Positives = 83/289 (28%), Gaps = 35/289 (12%)
Query: 235 NIKKLRGHRDAVYCAIFDRSGRFVI-TGSDDRLVKIWSMETAFCLASCRG--HEGDITDL 291
N+K + AV F + ++ ++ V I+ + T L G ++ +
Sbjct: 161 NLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSI 220
Query: 292 AVSSNNTLVASASNDFVIRVWRLPDGLPISVLR-GHTGAVTAIAFSPRPSAIYQLLSS-S 349
+ ++ + +I +W + + I G +T + ++ S
Sbjct: 221 CIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS 280
Query: 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN--GLQSHQILCCAYNA 407
IW+ + + + + +P G N G++S L +
Sbjct: 281 SKTFLTIWNFVKGH--CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS 338
Query: 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAM 467
N + +T + + ++ S+ + + F V + M
Sbjct: 339 NDKILLTDEATSSIVMF-----SLNELSSSK----AVISPSRFS--DVFIPTQVTANLTM 387
Query: 468 SDAFKEENVPKFKNSWFCHDN---------------IVTCSRDGSAIIW 501
+ + H + +V C G I+
Sbjct: 388 LLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF 436
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-25
Identities = 29/238 (12%), Positives = 64/238 (26%), Gaps = 43/238 (18%)
Query: 230 VQKMQNIKKLRG--HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR-GHEG 286
++ ++ ++ + AV D +I G+ ++ IW + + S G
Sbjct: 199 IRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA 258
Query: 287 DITDLAV----SSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAI 342
IT + V N+ +V S+ + +W G + F P +
Sbjct: 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL 318
Query: 343 YQ----------------------LLSSSDDGTCRIWDARYSQYSPRIYLPKP------P 374
+ LL+ + ++ S + P P
Sbjct: 319 EELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIP 378
Query: 375 DAITGKSNV----PSNNGPSSSNGLQSHQ--ILCCAY--NANGTVFVTGSSDTFARVW 424
+T + S + H I + + V + ++
Sbjct: 379 TQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF 436
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 4e-22
Identities = 44/437 (10%), Positives = 112/437 (25%), Gaps = 107/437 (24%)
Query: 262 SDDRLVKIWSMETAFCLASCRGHEGD-ITDLAVSSNNT-LVASASNDFVIRVWRLPDGLP 319
R + ++ +A+ +E + IT AVS T + + S+ VI++W L + +
Sbjct: 40 EIVRSPNMGNLRGK-LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV 98
Query: 320 ISVLR-----GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPP 374
V + VT I P SS DG + + Q +
Sbjct: 99 GEVYSSSLTYDCSSTVTQITMIPNFD---AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE 155
Query: 375 DAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVED 433
N + + A+ ++ V ++ + ++
Sbjct: 156 CIRKINLKNFGKN---------EYAVRMRAFVNEEKSLLVALTNLSRVIIFDI------R 200
Query: 434 SEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS 493
+ + + ++ S V+ + + ++ +
Sbjct: 201 TLERLQIIE-NSPRHGAVSSICID-------------------EE--CCV-----LILGT 233
Query: 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW 553
G IW R + W+ H + V + +
Sbjct: 234 TRGIIDIWDIRFNVL---IRSWSFGDHAPI----------------------THVEVCQF 268
Query: 554 SLDNRFVLAAI-MDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAM-------- 604
N ++ + +WN V G ++ + P +
Sbjct: 269 YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS 328
Query: 605 ----------------SAGYDGRTIVWDIWEGTPIRIYEIGRFK---LVDGKFSPDGTSI 645
+ +++ + E + + + + + + T +
Sbjct: 329 LNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTML 388
Query: 646 VLSDDVGQIYLLNTGQG 662
+ + ++
Sbjct: 389 LRKMKRTSTHSVDDSLY 405
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 6e-08
Identities = 9/86 (10%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDIT 289
+ ++ + K + I + +T + L++ + + H I
Sbjct: 357 LNELSSSKAVISPSRFSDVFIPTQ-----VTANLTMLLRKMKRTSTHSVDDSLYHHDIIN 411
Query: 290 DLAVSS--NNTLVASASNDFVIRVWR 313
++ L+ + N +I +++
Sbjct: 412 SISTCEVDETPLLVACDNSGLIGIFQ 437
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 10/107 (9%)
Query: 572 WNAVDGSLVHSLTGHSASS-YVLDVHPFNPRIAMSAGYDGRTI-VWDIWEGTPIRIYEIG 629
+ G L+ +L + +S V P ++ G I +W++ E +Y
Sbjct: 47 MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQG-VIKIWNLKEIIVGEVYSSS 105
Query: 630 RF-----KLVDGKFSPDGTSIVL-SDDVGQIYLLNTGQGESQKDAKY 670
+ P+ + + S D GQI +L + + + K+
Sbjct: 106 LTYDCSSTVTQITMIPNFDAFAVSSKD-GQIIVLKVNHYQQESEVKF 151
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 6e-30
Identities = 71/439 (16%), Positives = 123/439 (28%), Gaps = 114/439 (25%)
Query: 231 QKMQNIKKLRGHRDAVYCAIFDRSGRFVIT---GSDDRLVKIWS--METAFCLASCRGHE 285
Q ++++ + D+ +CA + +I G LV + GH
Sbjct: 23 QCYEDVRVSQTTWDSGFCA-VNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHT 81
Query: 286 GDITDLAVS-SNNTLVASASNDFVIRVWRLPDGL-------PISVLRGHTGAVTAIAFSP 337
+ D+A N+ ++AS S D + VW +PDG P+ L GHT V +A+
Sbjct: 82 APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWH- 140
Query: 338 RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQS 397
P+A LLS+ D +WD TG + G
Sbjct: 141 -PTAQNVLLSAGCDNVILVWDVG-----------------TGA--------AVLTLGPDV 174
Query: 398 H--QILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455
H I ++ +G + T D RV + E HE
Sbjct: 175 HPDTIYSVDWSRDGALICTSCRDKRVRVIEP------RKGTVVAEK--DRPHEG------ 220
Query: 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVT----CSRDGSAIIWIPRSRRSHGK 511
+ I+T + +W +
Sbjct: 221 ----TRPVHAVFV----------------SEGKILTTGFSRMSERQVALWDTKHL----- 255
Query: 512 VGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM-DCRIC 570
+ P L T GV + + D V D I
Sbjct: 256 -------------------EEPLSLQ---ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIR 293
Query: 571 VWNAVDGS-LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT--PIRIYE 627
+ + +H L+ S+ + + P+ + + + E PI +
Sbjct: 294 YFEITSEAPFLHYLSMFSSKESQRGM-GYMPKRGLEVNKCEIARFYKLHERKCEPIAMTV 352
Query: 628 IGRFKLV-DGKFSPDGTSI 645
+ L + + P
Sbjct: 353 PRKSDLFQEDLYPPTAGPD 371
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 2e-24
Identities = 70/432 (16%), Positives = 122/432 (28%), Gaps = 107/432 (24%)
Query: 254 SGRFVITGSDDRLVKIWSMETAFCLASCRGHE--GDITDLAVSSN-NTLVASASNDFVIR 310
S + V + S R V + C R + D AV+ L+ AS
Sbjct: 2 SRQVVRS-SKFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFL 60
Query: 311 VW------RLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQY 364
V R+ +P ++ GHT V IA+ P + + S S+D T +W+
Sbjct: 61 VLPLGKTGRVDKNVP--LVCGHTAPVLDIAWCPHNDNV--IASGSEDCTVMVWEI----- 111
Query: 365 SPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILCCAYNANG-TVFVTGSSDTFA 421
P + P L+ H + A++ V ++ D
Sbjct: 112 --------PDGGLVLPLREPVIT-------LEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 422 RVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481
VW + + L H + + V +S
Sbjct: 157 LVWDV------GTGAAVLTLG-PDVHPDTIYSVDWS------------------------ 185
Query: 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL 541
I T RD + PR P G R
Sbjct: 186 --RDGALICTSCRDKRVRVIEPRKGT------------------VVAEKDRPHEGTR--- 222
Query: 542 LPTPRGVNMIVWSLDNRFV---LAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPF 598
V+ + + + + + + ++ +W+ SL SS VL F
Sbjct: 223 ------PVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF-F 275
Query: 599 NP---RIAMSAGYDGRTIVWDIWEGTPIRIY--EIGRFKLVDG-KFSPDGTSIVLSDDVG 652
+P + + D ++I P Y + G + P V ++
Sbjct: 276 DPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIA 335
Query: 653 QIYLLNTGQGES 664
+ Y L+ + E
Sbjct: 336 RFYKLHERKCEP 347
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 4e-20
Identities = 33/241 (13%), Positives = 68/241 (28%), Gaps = 39/241 (16%)
Query: 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLA-SCRGHEG-DITDLAVSS 295
H D +Y + R G + T D+ V++ +A R HEG S
Sbjct: 171 GPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS 230
Query: 296 NNTLVAS---ASNDFVIRVWRLPDGLPISVL--RGHTGAVTAIAFSPRPSAIYQLLSSSD 350
++ + ++ + +W L + V F P + +Y L
Sbjct: 231 EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVY--LCGKG 288
Query: 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT 410
D + R ++ + + + SS + Y
Sbjct: 289 DSSIRYFEIT-----------------SEAPFLHYLSMFSSKESQRG-----MGYMPKRG 326
Query: 411 VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470
+ V + AR + + E PI + + + A + ++
Sbjct: 327 LEV--NKCEIARFYKLHERKCE----PIAM--TVPRKSDLFQEDLYPPTAGPDPALTAEE 378
Query: 471 F 471
+
Sbjct: 379 W 379
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 9e-28
Identities = 65/400 (16%), Positives = 121/400 (30%), Gaps = 115/400 (28%)
Query: 225 KPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVI-TGSDDRLVKIW----------SME 273
V I+ H V A + VI T + V ++
Sbjct: 110 GGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSG 169
Query: 274 TAFCLASCRGHEGDITDLAVSSNNT-LVASASNDFVIRVWRLPDGL-------PISVLRG 325
RGH+ + L+ + N + SAS+D I +W + ++ G
Sbjct: 170 ECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG 229
Query: 326 HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385
HT V +A+ ++ S +DD IWD R +
Sbjct: 230 HTAVVEDVAWHLLHESL--FGSVADDQKLMIWDTR------------------------N 263
Query: 386 NNGPSSSNGLQSHQ--ILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442
NN S+ + +H + C ++N + TGS+D +W D +L
Sbjct: 264 NNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW--------DLRNLKLKLH 315
Query: 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIV-TCSRDGSAIIW 501
H++++ VQ+S P ++ I+ + D +W
Sbjct: 316 SFESHKDEIFQVQWS-------------------PH-------NETILASSGTDRRLHVW 349
Query: 502 IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG----VNMIVWSLDN 557
L + GP + LL G ++ W+ +
Sbjct: 350 ------------------DLSKIGEEQSTEDAEDGPPE-LLFIHGGHTAKISDFSWNPNE 390
Query: 558 RFVLAAI-MDCRICVWNAVDGSL--------VHSLTGHSA 588
+++ ++ D + VW + L ++A
Sbjct: 391 PWIICSVSEDNIMQVWQMAENVYNDEEPEIPASELETNTA 430
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 1e-26
Identities = 42/235 (17%), Positives = 81/235 (34%), Gaps = 32/235 (13%)
Query: 223 IAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVI-TGSDDRLVKIW---SMETAFCL 278
I + + GH V + + + +DD+ + IW + T+
Sbjct: 211 INATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPS 270
Query: 279 ASCRGHEGDITDLAVSSNN-TLVASASNDFVIRVWRLPDG-LPISVLRGHTGAVTAIAFS 336
+ H ++ L+ + + ++A+ S D + +W L + L + H + + +S
Sbjct: 271 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 330
Query: 337 PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396
P I L SS D +WD + G+ + L
Sbjct: 331 PHNETI--LASSGTDRRLHVWDL----------------SKIGEEQSTEDAEDGPPELLF 372
Query: 397 SHQ-----ILCCAYNANG-TVFVTGSSDTFARVWSACKSSV--EDSEQPIHELDV 443
H I ++N N + + S D +VW ++ E+ E P EL+
Sbjct: 373 IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPEIPASELET 427
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 1e-23
Identities = 61/366 (16%), Positives = 112/366 (30%), Gaps = 114/366 (31%)
Query: 283 GHEGDITDLAVS-SNNTLVASASNDFVIRVWRLPDGL----------PISVLRGHTGAVT 331
HEG++ N ++A+ + + V+ P LRGH
Sbjct: 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGY 185
Query: 332 AIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391
++++P + LLS+SDD T +WD + R+ K
Sbjct: 186 GLSWNPNLNGY--LLSASDDHTICLWDINATPKEHRVIDAKNI----------------- 226
Query: 392 SNGLQSHQ--ILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE 448
H + A++ ++F + + D +W ++ +P H + H
Sbjct: 227 ---FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDT---RNNNTSKPSH---TVDAHT 277
Query: 449 NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS 508
+VN + F+ P + + T S D + +W R+ +
Sbjct: 278 AEVNCLSFN-------------------PYSEFI------LATGSADKTVALWDLRNLKL 312
Query: 509 HGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA-AIMDC 567
+ H + + WS N +LA + D
Sbjct: 313 KLH----SFESH--------------KDE----------IFQVQWSPHNETILASSGTDR 344
Query: 568 RICVWNA--------------VDGSLVHSLTGHSASSYVLDV--HPFNPRIAMSAGYDGR 611
R+ VW+ L+ GH ++ + D +P P I S D
Sbjct: 345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNI 402
Query: 612 TIVWDI 617
VW +
Sbjct: 403 MQVWQM 408
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 98.7 bits (246), Expect = 1e-21
Identities = 53/340 (15%), Positives = 103/340 (30%), Gaps = 83/340 (24%)
Query: 288 ITDLAVSSNNTLVASASNDFVIRVWRLPDG----LPISVLRGHTGAVTAIAFSPRPSAIY 343
I + + S + + D + + I + H G V + P+ + +
Sbjct: 85 IASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACV- 143
Query: 344 QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--IL 401
+ + + ++D P PD L+ HQ
Sbjct: 144 -IATKTPSSDVLVFDYTKHPSKPEPSGECQPDLR-----------------LRGHQKEGY 185
Query: 402 CCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460
++N N ++ S D +W + E + I ++ +GH V V +
Sbjct: 186 GLSWNPNLNGYLLSASDDHTICLWDINATPKEH--RVIDAKNIFTGHTAVVEDVAWH--- 240
Query: 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIV-TCSRDGSAIIWIPRSRRSHGKVGRWTRAY 519
H+++ + + D +IW R+
Sbjct: 241 ----------------LL-------HESLFGSVADDQKLMIWDTRN-------------- 263
Query: 520 HLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA-AIMDCRICVWNAVDGS 578
P + VN + ++ + F+LA D + +W+ +
Sbjct: 264 ------------NNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 311
Query: 579 L-VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617
L +HS H + + P N I S+G D R VWD+
Sbjct: 312 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 9e-24
Identities = 47/406 (11%), Positives = 102/406 (25%), Gaps = 80/406 (19%)
Query: 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRG---HEGDIT 289
MQ ++ + +D + S ++ S D + ++ + ++ +
Sbjct: 1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60
Query: 290 DLAVSSN-NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348
N + + + I L L + + +L+++
Sbjct: 61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGD--DKLIAA 118
Query: 349 SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN 408
S DG + D R N + + + N
Sbjct: 119 SWDGLIEVIDPR---------NYGDGVIAVKNLNSNNTKVKNK----------IFTMDTN 159
Query: 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468
+ + G +++ + + + + SG + + V
Sbjct: 160 SSRLIVGMNNSQVQWFRL------PLCEDDNGTIEESGLKYQIRDV-------------- 199
Query: 469 DAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPP 526
+ + S DG + +
Sbjct: 200 -------------ALLPKEQEGYACSSIDGRVAVEF------------FDDQGDDYNSSK 234
Query: 527 PLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH 586
+ R + L P VN I +S ++F+ A D I WN + +
Sbjct: 235 RFAFRCHRLNLKDTNLAYP--VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292
Query: 587 SASSYVLDVHPFNPRIAMSA-GYD---GRTIVWDIWEGTPIRIYEI 628
+ S V+ + + I A D + E IY I
Sbjct: 293 NEDS-VVKIA-CSDNILCLATSDDTFKTNAAIDQTIELNASSIYII 336
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 2e-17
Identities = 48/375 (12%), Positives = 91/375 (24%), Gaps = 108/375 (28%)
Query: 320 ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITG 379
+ + + ++ I P S LL +S DG+ ++
Sbjct: 4 VQIEQAPKDYISDIKIIPSKS---LLLITSWDGSLTVYK--------------------- 39
Query: 380 KSNVPSNNGPSSSNGLQSHQ--ILCCAYNAN-GTVFVTGSSDTFARVWSACKSSVEDSEQ 436
++ +LCC + N G+ S
Sbjct: 40 ---FDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS------- 89
Query: 437 PIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG 496
L+ +E ++ + D ++ S DG
Sbjct: 90 --PSFQALTNNEANLGICRICKYG-------------------------DDKLIAASWDG 122
Query: 497 SAIIWIPRSRRSHGKVGRWTRAYHLKVPPP-------------------------PLPPQ 531
+ PR+ + + + KV PL
Sbjct: 123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED 182
Query: 532 PPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN------AVDGSLVHSLTG 585
L R V + + + +D R+ V + S +
Sbjct: 183 DNGTIEESGLKYQIRDVAL--LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240
Query: 586 H-SASSYVLDVHP-----FNP---RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDG 636
H +P F+P + +AG DG W++ I+ + V
Sbjct: 241 HRLNLKDTNLAYPVNSIEFSPRHKFLY-TAGSDGIISCWNLQTRKKIKNFAKFNEDSVVK 299
Query: 637 -KFSPDGTSIVLSDD 650
S + + SDD
Sbjct: 300 IACSDNILCLATSDD 314
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 14/128 (10%), Positives = 46/128 (35%), Gaps = 9/128 (7%)
Query: 548 VNMIVWSLD-NRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSA 606
+ + + + + + I + + +LT + A+ + + + ++A
Sbjct: 59 LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118
Query: 607 GYDGRTIVWDIWEG----TPIRIYEIGRFKLVDGKFSPD--GTSIVL--SDDVGQIYLLN 658
+DG V D ++ K+ + F+ D + +++ ++ Q + L
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178
Query: 659 TGQGESQK 666
+ ++
Sbjct: 179 LCEDDNGT 186
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 98.2 bits (244), Expect = 2e-21
Identities = 16/204 (7%), Positives = 45/204 (22%), Gaps = 38/204 (18%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSG-RFVITGSDDRLVKIWSMETA----FCLASCRGHEGDI 288
+ R + D+ + ++ ++ L
Sbjct: 93 SPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRP 152
Query: 289 TDLAVSSNNTLVASASNDFVIRVWRLPD----GLPISVLRGHTGAVTAIAFSPRPSAIYQ 344
++++ ++T V A + + + GH +T +
Sbjct: 153 NAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQF 212
Query: 345 LLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ--ILC 402
+++S D +I L H+ +
Sbjct: 213 IITSDRDEHIKISHYP--------------------------QCFIVDKWLFGHKHFVSS 246
Query: 403 CAYNANGTVFVTGSSDTFARVWSA 426
+ + ++ D W
Sbjct: 247 ICCGKDYLL-LSAGGDDKIFAWDW 269
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 93.6 bits (232), Expect = 9e-20
Identities = 40/455 (8%), Positives = 115/455 (25%), Gaps = 88/455 (19%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDIT 289
K+Q + + + + + + D + + + + I
Sbjct: 48 FDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTAAKVPS-PGLGAPPIYSYIR 106
Query: 290 DLAVSSN-NTLVASASNDFVIRVWRLPDGLPISVL----RGHTGAVTAIAFSPRPSAIYQ 344
+L ++S+ + L+A A +D + V+ + + + AI+ + +
Sbjct: 107 NLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT---T 163
Query: 345 LLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCA 404
++ + G D K G S +
Sbjct: 164 VIIADKFGDVYSIDI--------------NSIPEEKFTQEPILGHVSM-------LTDVH 202
Query: 405 YNANG---TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAV 461
+ +T D ++ + + L GH++ V+ +
Sbjct: 203 LIKDSDGHQFIITSDRDEHIKISHY------PQCFIVDK--WLFGHKHFVSSICCGK--- 251
Query: 462 ASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS------HGKVGRW 515
+++ D W ++ ++ + + +
Sbjct: 252 ------------------------DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPY 287
Query: 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV 575
HL P +++ + + + + ++ + +
Sbjct: 288 LNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIII------LEMSEKQ 341
Query: 576 DGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVD 635
G L + V+ + N ++ D + G + + L +
Sbjct: 342 KGDLALKQI-ITFPYNVISLSAHNDEFQVTL--DNKESS-----GVQKNFAKFIEYNLNE 393
Query: 636 GKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKY 670
F + D + ++K+ Y
Sbjct: 394 NSFVVNNEKSNEFDSAIIQSVQGDSNLVTKKEEIY 428
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 87.8 bits (217), Expect = 6e-18
Identities = 41/453 (9%), Positives = 97/453 (21%), Gaps = 118/453 (26%)
Query: 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDL-------------- 291
+ + R G V + + + ++ D +
Sbjct: 7 LQNLLTSRDGSLVFAIIKNC-ILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQ 65
Query: 292 -AVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD 350
+ + N ++ I+ P + + + S + +
Sbjct: 66 SSENENENKKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--RLIACADS 123
Query: 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT 410
D + ++D + + + + P+ + + T
Sbjct: 124 DKSLLVFDVD----------KTSKNVLKLRKRFCFSKRPN-----------AISIAEDDT 162
Query: 411 VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470
+ + + + + GH + + V
Sbjct: 163 TVIIADKFGDVYSI-----DINSIPEEKFTQEPILGHVSMLTDVHLI------------- 204
Query: 471 FKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPP 530
F I+T RD I + + + +
Sbjct: 205 ------KDSDGHQF----IITSDRDEHIKIS------------HYPQCFIVDKW------ 236
Query: 531 QPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASS 590
L V+ I D + A D +I W+ G + + +S
Sbjct: 237 ----------LFGHKHFVSSICCGKDYLLLSAG-GDDKIFAWDWKTGKNLSTFDYNSLIK 285
Query: 591 YVLDVHPFNPRIAMSAGYDGRTI-VWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSI-VLS 648
L+ P + D V I S + +
Sbjct: 286 PYLNDQHLAPPRFQNENNDIIEFAVSKII-------------------KSKNLPFVAFFV 326
Query: 649 DDVGQIYLLNTGQGESQKDAKYDQFFLGDYRPL 681
+ I +L + + Q Y +
Sbjct: 327 EATKCIIILEMSEKQKGD-LALKQIITFPYNVI 358
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 92.1 bits (228), Expect = 8e-20
Identities = 20/222 (9%), Positives = 58/222 (26%), Gaps = 29/222 (13%)
Query: 241 GHRDAVYCAIF--DRSGRFVITGSDDRLVKIWSMETAFCLASCRGH-EGDITDLAVSSNN 297
+ + + + + I + + S E + + + + ++
Sbjct: 123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS 182
Query: 298 TLVASASNDFVIRVWRLPDG--LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355
L+A S D ++ V+ L + + F+ + D T
Sbjct: 183 LLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADN----GYWMVVECDQTVV 238
Query: 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG 415
+D R +V + P+ + + + +G +
Sbjct: 239 CFDLR--------------------KDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAY 278
Query: 416 SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS 457
S+++ + ++ + L D +
Sbjct: 279 SNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVV 320
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 77.1 bits (189), Expect = 7e-15
Identities = 36/386 (9%), Positives = 86/386 (22%), Gaps = 80/386 (20%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA-----FCLASCRGHEGDITD 290
+ ++ + +D + ++ + + R
Sbjct: 29 SRNIKTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAI 88
Query: 291 LAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR-GHTGAVTAIAFSPRPSAIYQLLSSS 349
++ N L+ + I + + + + + + Y + +
Sbjct: 89 ISRGPCNRLLLLYPGN-QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEY-FIWAD 146
Query: 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG 409
+ GT S ++ S + +
Sbjct: 147 NRGTIGFQS------------------YEDDSQYIVHSAKSDVE------YSSGVLHKDS 182
Query: 410 TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSD 469
+ S D V++ S + E + V+F+
Sbjct: 183 LLLALYSPDGILDVYNL------SSPDQASSRFPV-DEEAKIKEVKFA------------ 223
Query: 470 AFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLP 529
+N W D + + + R P
Sbjct: 224 ----DN-----GYWMV------VECDQTVVCFDLRKDVG--------------TLAYPTY 254
Query: 530 PQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSAS 589
P G NMI +S ++ + D + W + S + + +
Sbjct: 255 TIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADF 314
Query: 590 SYVLDVHPFNPRIAMSAGYDGRTIVW 615
+ + V A+ D IV
Sbjct: 315 TDMDVVCGDGGIAAILKTNDSFNIVA 340
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 63.2 bits (153), Expect = 3e-10
Identities = 22/219 (10%), Positives = 57/219 (26%), Gaps = 32/219 (14%)
Query: 449 NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS 508
+ ++ SR+ + +KE N + + W C + DG+ + ++
Sbjct: 15 PILKNLELLQAQNYSRNIKTFPYKELNKSMYYDKWVC----MCRCEDGALHFTQLKDSKT 70
Query: 509 HGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCR 568
+ + P I+ +L +
Sbjct: 71 ITTITTPNPRTGGEHP-------------------------AIISRGPCNRLLLLYPGNQ 105
Query: 569 ICVWNAVDGSLVHSL-TGHSASSYVLDVHP-FNPRIAMSAGYDGRTIVWDIWEGTPIRIY 626
I + ++ ++ + + + H N + A G + + ++
Sbjct: 106 ITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH 165
Query: 627 EIGRFKLVD-GKFSPDGTSIVLSDDVGQIYLLNTGQGES 664
G D + L G + + N +
Sbjct: 166 SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ 204
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 2e-05
Identities = 26/319 (8%), Positives = 67/319 (21%), Gaps = 89/319 (27%)
Query: 345 LLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCA 404
+ +DG + K IT + P+
Sbjct: 51 CMCRCEDGALHFTQ---------LKDSKTITTITTPNPRTGGEHPAI------------I 89
Query: 405 YNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASR 464
+ + + + + + E++V N++ Y+
Sbjct: 90 SRGPCNRLLLLYPGNQITILDS------KTNKVLREIEV--DSANEIIYMYGH------- 134
Query: 465 SAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVP 524
+ +F + G+ +
Sbjct: 135 ------------NEVNTEYF-----IWADNRGTIGFQSYEDDSQY--------------- 162
Query: 525 PPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT 584
+ + V D+ + D + V+N S
Sbjct: 163 -------------IVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRF 209
Query: 585 GHSASSYVLDVHPFNP-RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGK-----F 638
+ + +V F M D + +D+ + Y
Sbjct: 210 PVDEEAKIKEVK-FADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDI 268
Query: 639 SPDGTSIVL-SDDVGQIYL 656
G +++ S++ + +
Sbjct: 269 DDSGKNMIAYSNESNSLTI 287
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 88.5 bits (219), Expect = 1e-18
Identities = 33/194 (17%), Positives = 58/194 (29%), Gaps = 30/194 (15%)
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV 300
+ I T D + + H I + ++ + +V
Sbjct: 154 NEFNLGQIHITKLQSSGSATTQD---QGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMV 210
Query: 301 ASASNDF-VIRVWRLPDGLPISVLRGHT--GAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357
A+ S D +IRV++ DG+ + R V + +S S +L SD T ++
Sbjct: 211 ATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGS---KLAVVSDKWTLHVF 267
Query: 358 DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILC-----CAYNANGTVF 412
+ Q + R + G + QS LC + G
Sbjct: 268 EIFNDQDNKR----------------HALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKI 311
Query: 413 VTGSSDTFARVWSA 426
S + VW
Sbjct: 312 AWISESSLVVVWPH 325
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 80.8 bits (199), Expect = 5e-16
Identities = 17/145 (11%), Positives = 48/145 (33%), Gaps = 14/145 (9%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDD-RLVKIWSMETAFCLASCRGH--EG 286
+ ++ H + + +R V T S D +++++ E + R
Sbjct: 182 KAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA 241
Query: 287 DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISV--------LRGHTGAVTAIAFSPR 338
D+ D+ S++ + +A S+ + + V+ + + ++ + F
Sbjct: 242 DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLS 301
Query: 339 PSAIY---QLLSSSDDGTCRIWDAR 360
++ S+ +W
Sbjct: 302 VDKHVRGCKIAWISESSLVVVWPHT 326
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 3e-10
Identities = 33/260 (12%), Positives = 67/260 (25%), Gaps = 40/260 (15%)
Query: 226 PSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHE 285
P + I + V F++ +I + +I+++ +
Sbjct: 2 PLGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHI--MSQEM 58
Query: 286 GDITDLAVS-SNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAI-- 342
++ + + N + V+ +W +S ++ V + S +
Sbjct: 59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDA-PVKDLFLSREFIVVSY 117
Query: 343 --------------YQLLSSSDDGTCRIWDARYSQYSPRIY--------LPKPPDAITGK 380
G C + YS L A T
Sbjct: 118 GDVISVFKFGNPWKRITDDIRFGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQD 176
Query: 381 SNVPSNNGPSSSNGLQSHQ--ILCCAYNANGTVFVTGSSD-TFARVWSACKSSVEDSEQP 437
V +++H I N + T S D T RV+ +
Sbjct: 177 QGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKT------EDGVL 230
Query: 438 IHELDVLSGHENDVNYVQFS 457
+ E DV +++S
Sbjct: 231 VREF-RRGLDRADVVDMKWS 249
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 62.4 bits (151), Expect = 5e-10
Identities = 40/378 (10%), Positives = 88/378 (23%), Gaps = 90/378 (23%)
Query: 271 SMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAV 330
SM T + +TD + + + + ++ ++ + I + +
Sbjct: 5 SMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI--MSQEMRHL 61
Query: 331 TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAI------------- 377
+ + R + Y + IWD Q RI + P +
Sbjct: 62 SKVRMLHRTN--YVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGD 119
Query: 378 -----TGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVE 432
+ G+ Y+ + + + + +
Sbjct: 120 VISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGV 179
Query: 433 DSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTC 492
+ + + ++ H N + V+ + + + TC
Sbjct: 180 QQKAILGKGVLIKAHTNPIKMVRLN----------RKSDM----------------VATC 213
Query: 493 SRDGSAI-IWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMI 551
S+DG+ I ++ K R G V +
Sbjct: 214 SQDGTIIRVF---------KTEDGVLVREF------------RRG------LDRADVVDM 246
Query: 552 VWSLDNRFVLAAIMDCRICVWNAVDGSL--VHSLTGHSASSYVLDVHPF----------- 598
WS D + + V+ + H+L G Y
Sbjct: 247 KWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHV 306
Query: 599 NPRIAMSAGYDGRTIVWD 616
+VW
Sbjct: 307 RGCKIAWISESSLVVVWP 324
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 6e-09
Identities = 24/253 (9%), Positives = 67/253 (26%), Gaps = 53/253 (20%)
Query: 250 IFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVI 309
+F + D R + + S + G I ++ + ++ + D
Sbjct: 123 VFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQI---HITKLQSSGSATTQD--Q 177
Query: 310 RVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC-RIWDARYSQYSPRI 368
V + +++ HT + + + + + + S DGT R++ +
Sbjct: 178 GVQQKAILGKGVLIKAHTNPIKMVRLNRKSD---MVATCSQDGTIIRVFKTEDGV---LV 231
Query: 369 YLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACK 428
+ GL ++ ++ +G+ S V+
Sbjct: 232 REFRR--------------------GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI-F 270
Query: 429 SSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN 488
+ ++ + + +++ + F
Sbjct: 271 NDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCK-------------------- 310
Query: 489 IVTCSRDGSAIIW 501
I S ++W
Sbjct: 311 IAWISESSLVVVW 323
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 9e-09
Identities = 35/356 (9%), Positives = 77/356 (21%), Gaps = 62/356 (17%)
Query: 319 PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAIT 378
PI + VT F+ L S + I++
Sbjct: 11 PIVPENHVSNPVTDYEFNQD----QSCLILSTLKSFEIYNVH-----------------P 49
Query: 379 GKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPI 438
+ S + + N FV +W K Q +
Sbjct: 50 VAHIMSQEMRHLS--------KVRMLHRTNYVAFV-TGVKEVVHIWDDVKK------QDV 94
Query: 439 HELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSA 498
+ + V + S + + D +
Sbjct: 95 SRIK----VDAPVKDLFLSREFIVV--SYGDVISVFKFGNPWKRITDDIRFGGVCEFSNG 148
Query: 499 IIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPT-PRGVNMIVWSLDN 557
++ + Q + L+ + M+ + +
Sbjct: 149 LLVYSNEFNLGQ-IHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS 207
Query: 558 RFVLAAIMDCR-ICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP--RIAMSAGYDGRTIV 614
V D I V+ DG LV + V+D+ ++ V
Sbjct: 208 DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMK-WSTDGSKLAVVSDKWTLHV 266
Query: 615 WDIWEGTPIRIYEIGRFKL--------------VDGKFSPDGTSIVLSDDVGQIYL 656
++I+ + + + + + G I + + +
Sbjct: 267 FEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVV 322
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 2e-07
Identities = 36/299 (12%), Positives = 90/299 (30%), Gaps = 46/299 (15%)
Query: 397 SHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF 456
S+ + +N + + + + +F +++ P+ + +S ++ V+
Sbjct: 19 SNPVTDYEFNQDQSCLILSTLKSF-EIYNV---------HPVAHI--MSQEMRHLSKVRM 66
Query: 457 ----SGCAVASRSAMS----DAFKEENVPKFKNSW------FCHDNIVTCSRDGSAIIWI 502
+ A + D K+++V + K + IV D ++
Sbjct: 67 LHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKF 126
Query: 503 PRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA 562
+ R+ + G L +
Sbjct: 127 GNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQD---------- 176
Query: 563 AIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTI-VWDIWEGT 621
V + H+ ++ ++ + +A + DG I V+ +G
Sbjct: 177 ------QGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA-TCSQDGTIIRVFKTEDGV 229
Query: 622 PIRIYEIGRFK--LVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKYDQFFLGDY 678
+R + G + +VD K+S DG+ + + D +++ + K + Y
Sbjct: 230 LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKY 288
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 87.2 bits (215), Expect = 1e-17
Identities = 42/375 (11%), Positives = 96/375 (25%), Gaps = 89/375 (23%)
Query: 289 TDLAVSSNNTLVASASNDFVIRVWRLPDG----LPISVLRGHTGAVTAIAFSP---RPSA 341
D ++ + + + I+++++ + + + G V + + P
Sbjct: 165 MDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHL 224
Query: 342 IYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQIL 401
+ L S +GT + + T PS + L I
Sbjct: 225 VGCLSFVSQEGTINFLEIIDNA--------------TDVHVFKMCEKPSLTLSLADSLIT 270
Query: 402 CCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAV 461
+ + T V G + F + + D E P H++ + V +
Sbjct: 271 TFDFL-SPTTVVCGFKNGFVAEFD-----LTDPEVPSF---YDQVHDSYILSVSTA---- 317
Query: 462 ASRSAMSDAFKEENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAY 519
+ ++ + T + DG I+ P+
Sbjct: 318 ---------------------YSDFEDTVVSTVAVDGYFYIFNPKDIA------------ 344
Query: 520 HLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL 579
RG + +V+ + + + +
Sbjct: 345 -----TTKTTVSRFRGSN----------LVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA 389
Query: 580 VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD----IWEGTPIRIYEIGRFKLVD 635
VH L + + V +P + + DG I+ + + G +L
Sbjct: 390 VHPLVSRETTITAIGVSRLHPMVL-AGSADGSLIITNAARRLLHGIKNSSATQKSLRLWK 448
Query: 636 GKFSPDGTSIVLSDD 650
+S +
Sbjct: 449 WDYSIKDDKYRIDSS 463
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 83.4 bits (205), Expect = 3e-16
Identities = 29/284 (10%), Positives = 67/284 (23%), Gaps = 71/284 (25%)
Query: 252 DRSGRFVITGSDDRLVKIWSMETAFCLA-----------SCRGHEGDITDLAVSSNNTLV 300
+ S + + + + + IT S T+
Sbjct: 222 PHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTV- 280
Query: 301 ASASNDFVIRVWRLPDG-LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
+ + + L D +P + H + +++ + + + + DG I++
Sbjct: 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNP 340
Query: 360 RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT 419
+ + ++ Y ++ +
Sbjct: 341 KDIATTKTTVSRFR-----------------------GSNLVPVVYCPQIYSYIYSDGAS 377
Query: 420 FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKF 479
R + + +H L E + + S
Sbjct: 378 SLRAVPS------RAAFAVHP---LVSRETTITAIGVS---------------------- 406
Query: 480 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523
H ++ S DGS II R HG L++
Sbjct: 407 ----RLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRL 446
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 79.9 bits (196), Expect = 3e-15
Identities = 30/214 (14%), Positives = 59/214 (27%), Gaps = 30/214 (14%)
Query: 238 KLRGHRDAVY---CAIFDRSGRFVITGSDDRLVKIWSMETAFCLA--SCRGHEGDITDLA 292
+ H + A D V T + D I++ + R ++ +
Sbjct: 303 YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVV 362
Query: 293 VSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG 352
+ +R + L +TAI S +L+ S DG
Sbjct: 363 YCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHP---MVLAGSADG 419
Query: 353 TCRIWDA-----------RYSQYSPRIY-LPKPPDAITGKSNVPSNNGPSSSNGLQSHQ- 399
+ I +A +Q S R++ + + P + N + +
Sbjct: 420 SLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKI 479
Query: 400 ------ILCCAYNAN---GTVFVTGSSDTFARVW 424
I C +N G + +S +
Sbjct: 480 DAHGINITCTKWNETSAGGKCYAFSNSAGLLTLE 513
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 77.6 bits (190), Expect = 1e-14
Identities = 32/261 (12%), Positives = 76/261 (29%), Gaps = 38/261 (14%)
Query: 216 VCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA 275
+ L + F V G + V + +
Sbjct: 239 FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVV-CGFKNGFVAEFDLTDP 297
Query: 276 FCLASC-RGHEGDITDLAV---SSNNTLVASASNDFVIRVW--RLPDGLPISVLRGHTGA 329
+ + H+ I ++ +T+V++ + D ++ + +V R
Sbjct: 298 EVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSN 357
Query: 330 VTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGP 389
+ + + P+ + + S + R +R + L IT + S P
Sbjct: 358 LVPVVYCPQIYSY---IYSDGASSLRAVPSRAAF--AVHPLVSRETTIT--AIGVSRLHP 410
Query: 390 SSSNGLQSHQILCCAYNANGTVFV-------------TGSSDTFARVWSACKSSVEDSEQ 436
+L +A+G++ + + ++ R+W S +D +
Sbjct: 411 ---------MVLAG--SADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYR 459
Query: 437 PIHELDVLSGHENDVNYVQFS 457
+V NDV+ +
Sbjct: 460 IDSSYEVYPLTVNDVSKAKID 480
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 1e-05
Identities = 15/124 (12%), Positives = 32/124 (25%), Gaps = 6/124 (4%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV----S 294
L + R V+ GS D + I + L + L +
Sbjct: 393 LVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRL-LHGIKNSSATQKSLRLWKWDY 451
Query: 295 SNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354
S + + + + D + H +T ++ + S+ G
Sbjct: 452 SIKDDKYRIDSSYEVYPLTVNDVSKAKI-DAHGINITCTKWNETSAGGKCYAFSNSAGLL 510
Query: 355 RIWD 358
+
Sbjct: 511 TLEY 514
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 85.2 bits (210), Expect = 5e-17
Identities = 43/296 (14%), Positives = 82/296 (27%), Gaps = 45/296 (15%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
L+ + R + D +V+ H I ++++S+
Sbjct: 136 LKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA-----NAHTYHINSISINSDYE 190
Query: 299 LVASASNDFVIRVWRLPDG--------LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD 350
S ++D I +W L + + + T +TA F P + SS
Sbjct: 191 TYLS-ADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNT--FVYSSS 247
Query: 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT 410
GT R+ D R S R K + SN + SS I ++ +G
Sbjct: 248 KGTIRLCDMRASALCDRH--SKLFEEPEDPSNRSFFSEIISS-------ISDVKFSHSGR 298
Query: 411 VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470
+T + V D ++ HE + +
Sbjct: 299 YMMTRDYLSV---------KVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECC 349
Query: 471 FKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPP 526
+ + ++T S + ++ ++R V P
Sbjct: 350 WNGSD-----------SVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKP 394
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 81.0 bits (199), Expect = 9e-16
Identities = 57/436 (13%), Positives = 113/436 (25%), Gaps = 92/436 (21%)
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV 300
D + F+ SG + TG V I+ E + S E ++ S
Sbjct: 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFD 85
Query: 301 ASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360
S + + I + P+ +A Q L S++D T ++W
Sbjct: 86 YLKSLEI-------------------EEKINKIRWLPQKNAA-QFLLSTNDKTIKLWKIS 125
Query: 361 YSQYSPRIYLPKPPD-AITGKSNVPSNNGPSSSN--------------GLQSHQILCCAY 405
P Y K D + V + P ++ I +
Sbjct: 126 ERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185
Query: 406 NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465
N++ +++ + D +W + + + + +F
Sbjct: 186 NSDYETYLS-ADDLRINLWHLEITD-RSFNIVDIKPANMEELTEVITAAEFH-------- 235
Query: 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPP 525
P N+ V S G+ + R+ + +
Sbjct: 236 -----------PNSCNT------FVYSSSKGTIRLCDMRASALCDRHSK----------- 267
Query: 526 PPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN-AVDGSLVHSLT 584
L +P R ++ + +S R+++ + VW+ ++ V +
Sbjct: 268 --LFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTR-DYLSVKVWDLNMENRPVETYQ 324
Query: 585 GHSASSYVLDVHPFNPRIA--------------MSAGYDGRTIVWDIWEGTPIRIYEIGR 630
H L N I M+ Y+ ++D I E R
Sbjct: 325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASR 383
Query: 631 FKLVDGKFSPDGTSIV 646
Sbjct: 384 ENNKPRTVLKPRKVCA 399
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 1e-06
Identities = 39/304 (12%), Positives = 82/304 (26%), Gaps = 58/304 (19%)
Query: 388 GPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGH 447
G + ++ I +N +G + TG ++ + + ++ S
Sbjct: 19 GAVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQEN---------KIQSHSRG 69
Query: 448 ENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN----IVTCSRDGSAIIWIP 503
E +V S + EE + K + + + + D + +W
Sbjct: 70 EYNVYSTFQSHEPEFDYLKSLEI--EEKINKIR---WLPQKNAAQFLLSTNDKTIKLWKI 124
Query: 504 RSRRSHGKVGRWTRAYHLKVPPPPLPPQP------------PRGGPRQRLLPTPRG-VNM 550
R + + P PR+ +N
Sbjct: 125 SERD--KRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182
Query: 551 IVWSLDNRFVLAAIMDCRICVWNAVDGSLV--------HSLTGHSASSYVLDVHPFNPRI 602
I + D L+A D RI +W+ ++ + + HP +
Sbjct: 183 ISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNT 241
Query: 603 AMSAGYDGRTIVWDIWEGT----PIRIYEIGRFKLV------------DGKFSPDGTSIV 646
+ + G + D+ +++E D KFS G ++
Sbjct: 242 FVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMM 301
Query: 647 LSDD 650
D
Sbjct: 302 TRDY 305
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 2e-05
Identities = 17/140 (12%), Positives = 41/140 (29%), Gaps = 15/140 (10%)
Query: 218 SACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFC 277
+ C +K + N ++ F SGR+++T +
Sbjct: 260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRP 319
Query: 278 LASCRGHEG---------------DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISV 322
+ + + HE D + + ++++V + S + R++ I++
Sbjct: 320 VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITL 379
Query: 323 LRGHTGAVTAIAFSPRPSAI 342
PR
Sbjct: 380 EASRENNKPRTVLKPRKVCA 399
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 84.2 bits (207), Expect = 2e-16
Identities = 38/398 (9%), Positives = 97/398 (24%), Gaps = 80/398 (20%)
Query: 275 AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIA 334
+ + G A L+A A+ + ++ + L + A+ +
Sbjct: 7 SLAETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRS-AIKEMR 65
Query: 335 FSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394
F L+ + T + + + + + P
Sbjct: 66 FVKG----IYLVVINAKDTVYVLS------------------LYSQKVLTTVFVPG---- 99
Query: 395 LQSHQILCCAYNANGTVFVTGSSDTFARVWSA--CKSSVEDSEQPIHELDVLSGHENDVN 452
+I +A+ + G + V+ + S + + + +
Sbjct: 100 ----KITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIV 155
Query: 453 YVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKV 512
+Q++ V S + + +
Sbjct: 156 SIQWNP--------------------------RDIGTVLISYEYVTLTY-------SLVE 182
Query: 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 572
+++ ++PP +R V ++ ++ ++ D + W
Sbjct: 183 NEIKQSFIYELPPFAPGGDFSEKTNEKR----TPKVIQSLYHPNSLHIITIHEDNSLVFW 238
Query: 573 NAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFK 632
+A G ++ + T V P R + + + W I
Sbjct: 239 DANSGHMIMARTVFETEINV--PQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296
Query: 633 LVDG--------KFSPDGTSIVLSDDVGQIYLLNTGQG 662
+ G + S + + Y N Q
Sbjct: 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQM 334
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 84.2 bits (207), Expect = 3e-16
Identities = 51/459 (11%), Positives = 116/459 (25%), Gaps = 78/459 (16%)
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV 300
G A FD + + + V I+ + + I ++ LV
Sbjct: 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSA-IKEMRFVKGIYLV 73
Query: 301 ASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360
+ + V L ++ + G +T+I + +G+ ++D
Sbjct: 74 -VINAKDTVYVLSLYSQKVLTTV-FVPGKITSIDTDASLDWML---IGLQNGSMIVYDID 128
Query: 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTF 420
Q S + + S + I+ +N V S +
Sbjct: 129 RDQLSSFK--------------LDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYV 174
Query: 421 ARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFK 480
+S ++ + + A S+ E+ PK
Sbjct: 175 TLTYSLVENEI-------------------KQSFIYELPPFAPGGDFSEKTNEKRTPKVI 215
Query: 481 NSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPR 538
S + ++ I+T D S + W S G + + ++ P
Sbjct: 216 QSLYHPNSLHIITIHEDNSLVFWDANS----GHMIMARTVFETEINVPQPDYIRDSSTNA 271
Query: 539 QR------------------------LLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 574
+ + + MI R+ + + + N
Sbjct: 272 AKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANP 331
Query: 575 VDGSLVHSLTGHSASSYVLDVH-------PFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE 627
+ T + + NP + + +G G
Sbjct: 332 KQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKAS 391
Query: 628 IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666
+ L P T+ + + +++L +++
Sbjct: 392 LFPQNLSW--LRPLATTSMAASVPNKLWLGALSAAQNKD 428
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 83.8 bits (206), Expect = 4e-16
Identities = 54/486 (11%), Positives = 132/486 (27%), Gaps = 107/486 (22%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
Q + + D S +++ G + + ++ ++
Sbjct: 89 QKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDR------------------- 129
Query: 294 SSNNTLVASASNDFVIRVWRLPDGLPIS-VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG 352
+ ++L + S + +I ++PR + S +
Sbjct: 130 -------------DQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI---GTVLISYEY 173
Query: 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVF 412
+ ++ PP A G + +N ++ +++ Y+ N
Sbjct: 174 VTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEK-------RTPKVIQSLYHPNSLHI 226
Query: 413 VTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSD--- 469
+T D W A +S I + E ++N Q +S +A
Sbjct: 227 ITIHEDNSLVFWDA------NSGHMIM---ARTVFETEINVPQPDYIRDSSTNAAKISKV 277
Query: 470 AFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR-----SHGKVGRWTRAYHLKVP 524
+ EN P++ + H +I +I + + R G + +K+
Sbjct: 278 YWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIF 337
Query: 525 P----------PPLPPQPPRGGPRQ-----------------------RLLPTPRGVNMI 551
P P+P Q P +
Sbjct: 338 PLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNL 397
Query: 552 VWSLD--NRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYD 609
W + A++ + + + + L G + + ++ +
Sbjct: 398 SWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY-GTAFITGHSN 456
Query: 610 GRTIVWDIWEGT--PIRIYEIGRFKLVDGK---------FSPDGTSIVLSDDVGQIYLLN 658
G ++D G +E+ + ++ F+ + + +S + G + L
Sbjct: 457 GSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFK 516
Query: 659 TGQGES 664
+
Sbjct: 517 YEVNQF 522
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 2e-08
Identities = 41/333 (12%), Positives = 90/333 (27%), Gaps = 88/333 (26%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIW-----------SMETAFCLASCRGHEGD 287
L+G + G ITG + V+I+ S E + E
Sbjct: 431 LKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELA 490
Query: 288 ITDLAVSSNNTLVASASNDFVIRVWRLPDG------------------------------ 317
+ ++ ++ +A + + +++
Sbjct: 491 VDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVL 550
Query: 318 ---------------LPISVLRGHTGAVTAIAFSPRPSAIYQLL-SSSDDGTCRIWDARY 361
+P + + + G +AI S + + G+ + D R
Sbjct: 551 VDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-----IGFVGIAYAAGSLMLIDRR- 604
Query: 362 SQYSPRIYLPKPPDAITGKSNVPSNN-----GPSSSNGLQSHQILCCAYNANGTVFVTGS 416
P I + I+G + +G S ++C +
Sbjct: 605 ---GPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILP 661
Query: 417 SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476
+ + S+ PIH++D S +A+ M + K +
Sbjct: 662 ASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSS--------CLATIPKMQNLSKGLCI 713
Query: 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 509
P ++ D +I + +S+ +H
Sbjct: 714 PGI---------VLITGFDDIRLITLGKSKSTH 737
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 6e-05
Identities = 40/374 (10%), Positives = 97/374 (25%), Gaps = 55/374 (14%)
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV 300
V +++ + +IT +D + W + + + E +I
Sbjct: 209 KRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSS 268
Query: 301 ASASNDFVIRVWRLPDGLPISVL-------RGHTGAVTAIAFSPRPSAIYQLLSSSDDGT 353
+A+ + + S+L RG ++T I P +S +G
Sbjct: 269 TNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS----ITSYEGM 324
Query: 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFV 413
+ P P + P + +N + +
Sbjct: 325 KNYYANPKQM----KIFPLPTNVPIVNILPIPRQSPYFA----------GCHNPGLILLI 370
Query: 414 TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473
G+ + ++ + + + S P + LS + A +
Sbjct: 371 LGNGEIETMLYPSGIFTDKASLFPQN----LSWLRPLATTSMAASVPNKLWLGALSAAQN 426
Query: 474 ENVP--------KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPP 525
++ + K +T +GS I+ SHG +
Sbjct: 427 KDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIY----DASHGDI----------QDN 472
Query: 526 PPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG 585
R + V+ I ++ + + +I + ++
Sbjct: 473 ASFEVNLSRTLNK----AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENR 528
Query: 586 HSASSYVLDVHPFN 599
+ ++ F+
Sbjct: 529 PESGDLEMNFRRFS 542
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 | Back alignment and structure |
|---|
Score = 61.1 bits (147), Expect = 2e-09
Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 258 VITGSDDRLVKIWSMETAF-----------CLASCRGHEGDITDLAVSSNN-TLVASASN 305
+++ ++ + + T + G + D+ + ++VA
Sbjct: 111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170
Query: 306 DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360
D I V ++ + + + T AVT++ +SP+ QL +GT +
Sbjct: 171 DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGK---QLAVGKQNGTVVQYLPT 222
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 | Back alignment and structure |
|---|
Score = 48.0 bits (113), Expect = 2e-05
Identities = 21/182 (11%), Positives = 50/182 (27%), Gaps = 47/182 (25%)
Query: 284 HEGDITDLAVSSNNTLVA----SASNDFVIRVWRLPDGLP-----------ISVLRGHTG 328
+ I LA+S +N ++ S+ +I + + +L+ G
Sbjct: 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGG 150
Query: 329 AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388
V + ++P ++ + DG+ + +T V +
Sbjct: 151 MVIDMKWNPTVPSM--VAVCLADGSIAVLQ------------------VTETVKVCATLP 190
Query: 389 PSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPI-----HELDV 443
+ + ++ G G + + + P H + V
Sbjct: 191 STV-------AVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRV 243
Query: 444 LS 445
L
Sbjct: 244 LD 245
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 4e-05
Identities = 19/150 (12%), Positives = 41/150 (27%), Gaps = 15/150 (10%)
Query: 530 PQPPRGGPRQRLLPTPRGVNMIVWSLDNRF----VLAAIMDCRICVWN-----------A 574
P + L+P ++ + S DN ++++ I ++
Sbjct: 77 PNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQK 136
Query: 575 VDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLV 634
+ L + +P P + DG V + E + +
Sbjct: 137 RPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVT 196
Query: 635 DGKFSPDGTSIVLSDDVGQIYLLNTGQGES 664
+SP G + + G + E
Sbjct: 197 SVCWSPKGKQLAVGKQNGTVVQYLPTLQEK 226
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 4e-09
Identities = 84/589 (14%), Positives = 168/589 (28%), Gaps = 207/589 (35%)
Query: 330 VTAIAFSPR-PSAIYQLLSSSDDGTCRIWDA--RYSQYS-PRIYLPKPPDAI-------- 377
++ I R PS + ++ D R+++ +++Y+ R +P +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRD---RLYNDNQVFAKYNVSR---LQPYLKLRQALLELR 148
Query: 378 ------------TGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVW- 424
+GK+ V + + S+++ C + +F W
Sbjct: 149 PAKNVLIDGVLGSGKTWV-------ALDVCLSYKVQCKM---DFKIF-----------WL 187
Query: 425 --SACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV----PK 478
C S E L L ++ D N+ S + + + E
Sbjct: 188 NLKNCNSPETVLEM----LQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 479 FKNSWFCHDNI----------VTC-----SRDGSAIIWIPRSRRSHGKVGRWTRAYH--- 520
++N N+ ++C +R ++ + +H + +
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 521 --------LKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 572
L P LP + PR+ +++I A + + W
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRR--------LSII----------AESIRDGLATW 344
Query: 573 NAVDGSLVHSLTGHSASSY-VLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRF 631
+ LT SS VL+ P R ++++
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLE--PAEYR----------------------KMFD---- 376
Query: 632 KLVDGKFS--PDGTSI---VLS--------DDVGQIYLLNTGQGES--QKDAKYDQFFLG 676
+ S P I +LS DV + +N S +K K +
Sbjct: 377 -----RLSVFPPSAHIPTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIP 429
Query: 677 DYRPLIRDSLGNVLDQETQLVPHRR-----NIQDPLCDSSMIP-YEEPY----------- 719
+ + L+ E L HR NI +IP Y + Y
Sbjct: 430 S---IYLELKVK-LENEYAL--HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 720 ----------QSMYQ-----QRRLGALGIEWRPSSIKLAIGLDFSLGQDYAMPPLEDLER 764
+ ++ ++++ W S L + Y ER
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 765 MMEPVPEFIDPVYWEPENEVISDDND-------SEYN-IAEECASEAEQ 805
++ + +F+ + EN + S D +E I EE + ++
Sbjct: 544 LVNAILDFLPKI---EENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 1e-06
Identities = 89/600 (14%), Positives = 164/600 (27%), Gaps = 161/600 (26%)
Query: 632 KLVDGKFSPDGTSIVLS-----------DDVGQIYLLNTGQGESQKDAKYDQFFLG---- 676
D K D +LS D V L S+++ +F
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL-FWTLLSKQEEMVQKFVEEVLRI 89
Query: 677 DYRPLIRDSLGNVLDQETQLVPHRRNIQDPLCDSS--MIPYEEPYQSMYQQRRLGALGIE 734
+Y + + Q + + +D L + + Y Y + R L E
Sbjct: 90 NY-KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL--E 146
Query: 735 WRPSSI----------K--LAIGLDFSLGQDYAMPPLEDLERMMEPVPEFIDPVYW---- 778
RP+ K +A+ + Y ++ M+ ++W
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVAL----DVCLSY------KVQCKMD------FKIFWLNLK 190
Query: 779 ---EPENEVISDDNDSEYNIAEECASEAEQGRDSEVE-HSRKDGRRR--STRRKHRA--- 829
PE V+ Y I S ++ + ++ HS + RR ++
Sbjct: 191 NCNSPE-TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 830 --EVELKTSSGRRVRKRNLD------ERDGS----ASGSNRTKKS-KNSQKALKKKSSKA 876
V + + NL R S + T S + L K+
Sbjct: 250 LLNV----QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 877 KLLR---------PQRVAARN--ARSMFSRITGTSTGEDDSDSEY----NSSNSDTVLQD 921
LL+ P+ V N S+ S + + + N T+++
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSII----AESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 922 S-HVQSKEDDRN------------------LQNMQQQHKREEEQTIVESEFMGKPLELLE 962
S +V + R L + + + +V + L+E
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN-KLHKY--SLVE 418
Query: 963 SQSDTGNRKRLVLKLSLRDHKKALSLEDTRVKGDDMAKLPQSSSGPPQGTTERKI----D 1018
Q +S+ + L + +VK ++ L R I +
Sbjct: 419 KQPKES-------TISIPS----IYL-ELKVKLENEYAL------------HRSIVDHYN 454
Query: 1019 LSLKEPGSSSAGSGIDVGLSQKHNRIVF--ADGSQDEKYDSQLEESAGDMENKTRWAEVK 1076
+ +D H I + E+ D R+ E K
Sbjct: 455 IPKTFDSDDLIPPYLD-QYFYSH--IGHHLKNIEHPERMTL-FRMVFLDF----RFLEQK 506
Query: 1077 IR-TSKRSSSSGVLLPPDANFDVHNDSIGD-VNRCVKLENGHGKFSSNSETSCYGCVRSC 1134
IR S ++SG +L + I D + +L N F E + +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 3e-05
Identities = 76/655 (11%), Positives = 171/655 (26%), Gaps = 189/655 (28%)
Query: 963 SQSDTGNRKRLVLKLSLRDHKKALSLED---------TRVKGDDMAKLPQSSSGPPQGTT 1013
+ + +L + +D ++ + D + + SG T
Sbjct: 12 GEHQYQYKD--ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG-----T 64
Query: 1014 ERKIDLSLKEPGSSSAGSGIDVGLSQKHNRIV--FADGSQD-----EKYDSQLEESAGDM 1066
R L ++ L + ++ + Y Q + D
Sbjct: 65 LRLFWT-LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 1067 E-----NKTRWAEV-KIRTS--KRSSSSGVL-----------LPPDA----------NFD 1097
+ N +R K+R + + + VL + D +F
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 1098 VHNDSIGDVNR-----------CVKLENGHGKFSSNSETSCYGCVRSCSDKEKF------ 1140
+ ++ + N +++ ++S S+ S +R S + +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQID---PNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 1141 --GSDALLDLASVRKEELARHEDIKKSSSFNSTPLVDHQQNDDVHKSRNEDVGTNYRDEL 1198
+ LL L +V+ + ++ L+ +R + V D L
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLS------CKILL---------TTRFKQVT----DFL 281
Query: 1199 KENPPLRVRIRTKGILRDTKSPSEQKS------STSVKDLPSAESDPIPMSESSLCMEGN 1252
+ + T +P E KS +DLP P L +
Sbjct: 282 SAATTTHISLDH---HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR---RLSIIAE 335
Query: 1253 LMSEVPEEAEGYGRSSSDQL---LNSNLKFKVRDGSKSSYKTRTDIEAFDGGMEDGINHE 1309
+ + + + + D+L + S+L + + + F +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD---RLSVF----PPSAH-- 386
Query: 1310 ASGIDSPEAASGSIRKTRSM---KMKIISREPIAANCNFKSKNGHDLVGTSKTVGNSSME 1366
I P S+ + + + S LV K S++
Sbjct: 387 ---I--PT-------ILLSLIWFDVIKSDVMVVVNKLHKYS-----LV--EKQPKESTIS 427
Query: 1367 AHDEFFPEEWIPTSTVKSRPRSTRNRRGDHDGHPCLLSGRKSNFPVRKLSWLMLSEHEEG 1426
+ ++ H ++ N P S ++ + +
Sbjct: 428 IPSIYL--------------ELKVKLENEYALHRSIVD--HYNIPKTFDSDDLIPPYLDQ 471
Query: 1427 Y--RYIP------QLGDEVIYSRQGHQEF------IESTGSQEVGPWWSIN--------- 1463
Y +I + + + R +F I + +N
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 1464 GYISAVETC--KVVNLVYATF-PGSG------DSCCKITLKFVDPSSSVLGKAFK 1509
YI + ++VN F P + + + ++ +A K
Sbjct: 532 PYICDNDPKYERLVNA-ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
|
| >3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 28/119 (23%)
Query: 1619 SFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRF--PV-----PLYPEVI---------R 1662
S KL ++ Q+ D F PV P Y +I +
Sbjct: 1 SMLKLSAENESTPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMK 60
Query: 1663 LRLVNNYYRSLEAAKDDINVMLSNAESY------FIKNAALSAKVERLRDWFNRTLNKL 1715
++V N Y+S+ K D +M NA +Y + K A +++ + ++K
Sbjct: 61 DKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLA------KKILHAGFKMMSKE 113
|
| >3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 9e-05
Identities = 20/108 (18%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKL-----DYLNRFPVPLYPEVIRLRLVN 1667
+ + L SV QD G + +++ ++ ++ N+ P+ ++IR + N
Sbjct: 5 TLLIQELIHNLFVSVMSHQDDEG-RCYSDSLAEIPAVDPNFPNKPPLTF--DIIRKNVEN 61
Query: 1668 NYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNKL 1715
N YR L+ ++ + +L A ++ + L+ +F + ++L
Sbjct: 62 NRYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDEL 109
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Length = 388 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 9e-05
Identities = 33/256 (12%), Positives = 74/256 (28%), Gaps = 49/256 (19%)
Query: 449 NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS 508
D + + + +E V + W + + D + ++ I R
Sbjct: 90 PDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGY-GTWVANSDCTKLVGIEIRRED 148
Query: 509 HGKVGRWTRAYHLKVPPPP--LPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA---- 562
+ W + + P L + G +L + + ++ + +A
Sbjct: 149 WVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHE 208
Query: 563 ---AIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE 619
++D R+ + N DG+ + + H+ H F DG +V+ +
Sbjct: 209 GPHDLVDARMWLINE-DGTNMRKVKTHAEGESCT--HEFWVP-------DGSALVYVSYL 258
Query: 620 --GTPIRIYEI----GRFKLV-------------DGK-FSPDGTSIVLS---------DD 650
IY + + DG DG+ + ++
Sbjct: 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEN 318
Query: 651 VGQIYLLNTGQGESQK 666
+Y+ N G +
Sbjct: 319 DPFLYVFNMKNGTQHR 334
|
| >3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} Length = 126 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 12/117 (10%)
Query: 1608 IDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRL---- 1663
++ +L F ++ + +D Q L L + Y E I
Sbjct: 2 MEVARAARLAQIFKEICDGIISYKDSSR-QALAAPLLNL--PPKKKNADYYEKISDPLDL 58
Query: 1664 -----RLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNKL 1715
+++ YY+++EA D+ + NAE Y+ + + + V RLR + ++
Sbjct: 59 ITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAYYNARHEA 115
|
| >2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 28/113 (24%)
Query: 1625 QSVSRKQDYYGIQRLNEAAQKLDYLNRF--PV-----PLYPEVI---------RLRLVNN 1668
+ V + + +L Q+ D F PV P Y +I + ++ NN
Sbjct: 2 EEVEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNN 61
Query: 1669 YYRSLEAAKDDINVMLSNAESY------FIKNAALSAKVERLRDWFNRTLNKL 1715
Y+S+E KD+ +M +NA Y + K A ++L + L++
Sbjct: 62 DYQSIEELKDNFKLMCTNAMIYNKPETIYYKAA------KKLLHSGMKILSQE 108
|
| >3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 1661 IRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNKL 1715
I+ +L Y + D ++ +NA+SY+ ++ +L D + RT N+
Sbjct: 57 IQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLWDLYLRTRNEF 111
|
| >3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} Length = 135 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 6e-04
Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 28/116 (24%)
Query: 1622 KLEQSVSRKQDYYGIQRLNEAAQKLDYLNRF--PV-----PLYPEVI---------RLRL 1665
++ + ++ + + Q D F PV P Y + I R RL
Sbjct: 4 QVAMELRLTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRL 63
Query: 1666 VNNYYRSLEAAKDDINVMLSNAESY------FIKNAALSAKVERLRDWFNRTLNKL 1715
Y++L ++D ++++ N Y F + A RLRD L +
Sbjct: 64 EAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAA------VRLRDQGGVVLRQA 113
|
| >2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 1610 SESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVI-------- 1661
S + KL N + +V +D G ++L+E +L +R +P Y E+I
Sbjct: 8 SPNPPKLTKQMNAIIDTVINYKDSSG-RQLSEVFIQL--PSRKELPEYYELIRKPVDFKK 64
Query: 1662 -RLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNKL 1715
+ R+ N+ YRSL + D+ ++ NA+++ ++ + + L+ F
Sbjct: 65 IKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSG 119
|
| >3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} Length = 130 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 15/129 (11%)
Query: 1596 MHDPNVMWEHPEIDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVP 1655
MH + H + L +L +V ++ G Q + E L ++ P
Sbjct: 1 MHHHH---HHSSGVDLGTENLYFQSMQLYDTVRSCRNNQG-QLIAEPFYHL--PSKKKYP 54
Query: 1656 LYPEVIRL---------RLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRD 1706
Y + I++ +L N Y +L+ + D+N+M NA+ Y + N+A+ +V +L+
Sbjct: 55 DYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQ 114
Query: 1707 WFNRTLNKL 1715
+L
Sbjct: 115 VMQAKKKEL 123
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1715 | |||
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.98 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.98 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.98 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 1t77_A | 414 | Lipopolysaccharide-responsive and beige-like ancho | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.95 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.95 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.95 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.95 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.94 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.94 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.94 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.92 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.91 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.91 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.91 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.89 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.89 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.87 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.87 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.86 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.85 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.85 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.85 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.84 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.84 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.83 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.83 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.83 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.83 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.82 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.82 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.81 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.8 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.79 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.78 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.78 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.77 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.77 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.76 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.76 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.75 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.75 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.75 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.74 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.72 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.71 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.67 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.67 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.66 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.65 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.64 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.64 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.62 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.61 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.61 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.6 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.59 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.56 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.56 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.55 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.55 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.54 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.52 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.51 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.49 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.49 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.48 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.47 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.47 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.46 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.44 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.43 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.42 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.42 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.37 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.37 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.36 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.33 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.33 | |
| 3d7c_A | 112 | General control of amino acid synthesis protein 5; | 99.32 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.32 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.3 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.3 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.29 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.28 | |
| 3nxb_A | 116 | CAT eye syndrome critical region protein 2; struct | 99.28 | |
| 2dat_A | 123 | Possible global transcription activator SNF2L2; br | 99.27 | |
| 3tlp_A | 150 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.26 | |
| 4alg_A | 154 | Bromodomain-containing protein 2; signaling protei | 99.26 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.26 | |
| 3k2j_A | 130 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.26 | |
| 3ljw_A | 120 | Protein polybromo-1; alpha helix, alternative spli | 99.26 | |
| 2grc_A | 129 | Probable global transcription activator SNF2L4; br | 99.25 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.25 | |
| 3iu5_A | 116 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.24 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.24 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.24 | |
| 3fkm_X | 166 | Signaling protein; bromodomain, malaria, structura | 99.23 | |
| 2oss_A | 127 | HUNK1 protein, bromodomain-containing protein 4; B | 99.22 | |
| 3jvl_A | 120 | Bromodomain-containing protein 4; alpha helical, N | 99.21 | |
| 3g0l_A | 117 | Hwalp4, bromodomain adjacent to zinc finger domain | 99.21 | |
| 3mb4_A | 124 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.21 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.21 | |
| 2i7k_A | 117 | Bromodomain-containing protein 7; helix, LEFT-hand | 99.2 | |
| 3p1f_A | 119 | CREB-binding protein; structural genomics consorti | 99.2 | |
| 2yyn_A | 135 | Transcription intermediary factor 1-alpha; bromo d | 99.19 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.18 | |
| 1e6i_A | 121 | Transcriptional activator GCN5; gene regulation, b | 99.18 | |
| 2ri7_A | 174 | Nucleosome-remodeling factor subunit BPTF; zinc fi | 99.18 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.18 | |
| 3q2e_A | 123 | Bromodomain and WD repeat-containing protein 1; st | 99.18 | |
| 2ouo_A | 130 | HUNK1 protein, bromodomain-containing protein 4; B | 99.17 | |
| 2d9e_A | 121 | Peregrin; four-helix bundle, transcription activat | 99.16 | |
| 3mqm_A | 126 | Probable histone-lysine N-methyltransferase ASH1L; | 99.16 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.14 | |
| 3rcw_A | 135 | Bromodomain-containing protein 1; transcription, s | 99.14 | |
| 3mb3_A | 135 | PH-interacting protein; PHIP, pleckstrin homology | 99.13 | |
| 3uv4_A | 158 | Second bromodomain of human transcription initiat | 99.12 | |
| 3hme_A | 123 | Bromodomain-containing protein 9; BRD9, bromodomai | 99.12 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.1 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.1 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.09 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.07 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.04 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.04 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.03 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.03 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.02 | |
| 3o36_A | 184 | Transcription intermediary factor 1-alpha; TRIM24, | 99.02 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.99 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.99 | |
| 3dai_A | 130 | ATPase family AAA domain-containing protein 2; anc | 98.99 | |
| 2ro1_A | 189 | Transcription intermediary factor 1-beta; KAP, TIF | 98.94 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.94 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.94 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.93 | |
| 3uv5_A | 265 | Transcription initiation factor TFIID subunit 1; t | 98.93 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.92 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.9 | |
| 2dkw_A | 131 | Hypothetical protein KIAA1240; bromodomain-like, f | 98.9 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.89 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.89 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.87 | |
| 3uv5_A | 265 | Transcription initiation factor TFIID subunit 1; t | 98.87 | |
| 2r0y_A | 311 | Chromatin structure-remodeling complex protein RSC | 98.86 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.85 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.85 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.83 | |
| 2r10_A | 361 | Chromatin structure-remodeling complex protein RSC | 98.82 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.81 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.81 | |
| 3u5n_A | 207 | E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b | 98.8 | |
| 3aad_A | 292 | Transcription initiation factor TFIID subunit 1; p | 98.78 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.77 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.77 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.74 | |
| 2r0y_A | 311 | Chromatin structure-remodeling complex protein RSC | 98.73 | |
| 3aad_A | 292 | Transcription initiation factor TFIID subunit 1; p | 98.72 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.67 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.65 | |
| 2r10_A | 361 | Chromatin structure-remodeling complex protein RSC | 98.63 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.6 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.55 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.48 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.44 | |
| 3iu6_A | 147 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 98.43 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.42 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.41 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.38 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.33 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.31 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.23 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.23 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.23 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.2 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.2 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.16 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.14 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.06 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.06 | |
| 3lqh_A | 183 | Histone-lysine N-methyltransferase MLL; PHD finger | 98.06 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.99 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.98 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.94 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.93 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.91 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.89 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.88 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.84 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.82 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.77 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.75 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.74 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.74 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.68 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.67 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.66 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.62 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.62 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.6 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.59 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.59 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.53 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.51 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.45 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.39 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.36 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.36 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.35 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.32 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.32 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.24 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.22 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.17 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.16 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.14 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.08 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.98 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 96.87 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.84 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.78 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.68 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.63 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.58 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.56 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.41 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.4 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.33 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.32 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.15 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.13 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.05 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 95.97 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 95.73 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.71 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 95.68 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 95.64 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 95.54 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.5 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 95.37 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 95.35 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.29 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 94.97 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 94.79 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 94.44 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 94.41 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 94.3 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 94.26 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 93.74 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 93.47 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 93.41 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 93.16 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 93.16 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 92.79 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 92.7 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 92.56 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 92.15 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 90.28 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 89.51 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 89.36 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 89.25 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 88.93 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 87.87 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 87.53 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 85.93 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 85.73 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 84.21 | |
| 3p8d_A | 67 | Medulloblastoma antigen MU-MB-50.72; tudor domain, | 83.11 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 80.66 |
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=447.36 Aligned_cols=436 Identities=15% Similarity=0.200 Sum_probs=316.4
Q ss_pred CCCCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 048801 189 HMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVK 268 (1715)
Q Consensus 189 ~~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIr 268 (1715)
..+...+..++|.+.|..++.... .....+.+...+.+..|.+|.+.|++++|+|||++||+|+.||+|+
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~~----------~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~ 84 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCNG----------TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVR 84 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEET----------TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CcccCceeEEeeCCCCCEEEeCCC----------CEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEE
Confidence 344566677888887765544321 1112233445667888999999999999999999999999999999
Q ss_pred EEeCCCCc--EEEEe--------------------------------------------cCCCCCeEEEEECCCCC-EEE
Q 048801 269 IWSMETAF--CLASC--------------------------------------------RGHEGDITDLAVSSNNT-LVA 301 (1715)
Q Consensus 269 IWDl~tgk--~l~tL--------------------------------------------~gHs~~VtsLafSpDg~-lLA 301 (1715)
|||+.++. ....+ .+|...|++++|+|++. +|+
T Consensus 85 lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~ 164 (611)
T 1nr0_A 85 IWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRII 164 (611)
T ss_dssp EEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred EeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEE
Confidence 99986432 22222 35666677777777765 588
Q ss_pred EEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCcc
Q 048801 302 SASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKS 381 (1715)
Q Consensus 302 SGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~ 381 (1715)
+|+.|++|++||+.+++++..+.+|...|++++|+|++. +|++++.|++|++||+.+++....+...
T Consensus 165 s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~---~las~s~D~~i~lwd~~~g~~~~~~~~~---------- 231 (611)
T 1nr0_A 165 SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS---LFASTGGDGTIVLYNGVDGTKTGVFEDD---------- 231 (611)
T ss_dssp EEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS---EEEEEETTSCEEEEETTTCCEEEECBCT----------
T ss_pred EEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCC---EEEEEECCCcEEEEECCCCcEeeeeccc----------
Confidence 999999999999999999999999999999999999998 8999999999999999887754433110
Q ss_pred CCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCC--------------------------
Q 048801 382 NVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE-------------------------- 435 (1715)
Q Consensus 382 ~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~-------------------------- 435 (1715)
......|...|.+++|+|+|++|++|+.|++|+|||+.+++.....
T Consensus 232 --------~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d 303 (611)
T 1nr0_A 232 --------SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 303 (611)
T ss_dssp --------TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT
T ss_pred --------cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCC
Confidence 0112257888999999999999999999999999999876432110
Q ss_pred --------CCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCc
Q 048801 436 --------QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 507 (1715)
Q Consensus 436 --------~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~ 507 (1715)
........+.+|...|.+++|+|++ .+|++++.||+|++||+.++.
T Consensus 304 ~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg--------------------------~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 304 GFINFVNPELGSIDQVRYGHNKAITALSSSADG--------------------------KTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp CCEEEEETTTTEEEEEECCCSSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEETTTCC
T ss_pred CcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC--------------------------CEEEEEeCCCcEEEEECCCCc
Confidence 0012334567899999999999987 566777777777777766543
Q ss_pred cCcccc--c-------------------ccccccccCCCCCCCC-----------C------CCCC--------------
Q 048801 508 SHGKVG--R-------------------WTRAYHLKVPPPPLPP-----------Q------PPRG-------------- 535 (1715)
Q Consensus 508 ~~~~~~--~-------------------~~~~~~l~~~~~~~~~-----------~------~~~g-------------- 535 (1715)
...... . +.....+......... . ...+
T Consensus 358 ~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~ 437 (611)
T 1nr0_A 358 SNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 437 (611)
T ss_dssp EEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEE
T ss_pred eeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEE
Confidence 211100 0 0000000000000000 0 0000
Q ss_pred --CCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce--EEEEecCCCCeEEEEEccCCCcEEEEEeCCCc
Q 048801 536 --GPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL--VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGR 611 (1715)
Q Consensus 536 --~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~--l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGt 611 (1715)
... ....+...+.+++|+|||++|++|+.|++|+|||+.++.. +.. .+|...|++|+|+| ++.+|++++.|++
T Consensus 438 ~~~~~-~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fsp-dg~~las~s~d~~ 514 (611)
T 1nr0_A 438 SHGKL-TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSN-NGAFLVATDQSRK 514 (611)
T ss_dssp ETTEE-EEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred eCCce-eeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECC-CCCEEEEEcCCCC
Confidence 001 1112556789999999999999999999999999987654 234 68999999999999 7889999999999
Q ss_pred EEEEECCC-CceEEE--EEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-c--------cccccceeecCCCc
Q 048801 612 TIVWDIWE-GTPIRI--YEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGES-Q--------KDAKYDQFFLGDYR 679 (1715)
Q Consensus 612 I~VWDl~t-gk~l~t--l~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~-~--------k~~~~~~~fs~D~r 679 (1715)
|++|++.+ ++++.. +..|...|.+++|+|||++||+|+.||.|+||++.+++. . ........|++|++
T Consensus 515 v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~ 594 (611)
T 1nr0_A 515 VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 594 (611)
T ss_dssp EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE
T ss_pred EEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE
Confidence 99999987 665543 334888999999999999999999999999999987652 2 12234567899998
Q ss_pred cEEEcC
Q 048801 680 PLIRDS 685 (1715)
Q Consensus 680 ~L~~d~ 685 (1715)
|+...
T Consensus 595 -l~s~~ 599 (611)
T 1nr0_A 595 -IVSAG 599 (611)
T ss_dssp -EEEEE
T ss_pred -EEEec
Confidence 66543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=430.60 Aligned_cols=451 Identities=22% Similarity=0.357 Sum_probs=342.1
Q ss_pred eeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 234 k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
+..++|.||.+.|+||+|+|||++||+|+.|++|+|||. ++++++++.+|.+.|++|+|+||+++||+++.|++|+|||
T Consensus 7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd 85 (577)
T 2ymu_A 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 455789999999999999999999999999999999995 7899999999999999999999999999999999999999
Q ss_pred CCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCcc------------
Q 048801 314 LPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKS------------ 381 (1715)
Q Consensus 314 l~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~------------ 381 (1715)
+ +++++..+.+|...|.+++|+|++. +|++++.|+.+++|+.......... .....+....
T Consensus 86 ~-~~~~~~~~~~~~~~v~~~~~s~d~~---~l~~~~~d~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~ 158 (577)
T 2ymu_A 86 R-NGQLLQTLTGHSSSVRGVAFSPDGQ---TIASASDDKTVKLWNRNGQLLQTLT---GHSSSVWGVAFSPDGQTIASAS 158 (577)
T ss_dssp T-TSCEEEEECCCSSCEEEEEECTTSS---EEEEEETTSCEEEEETTCCEEEEEC---CCSSCEEEEEECTTSSCEEEEE
T ss_pred C-CCCEEEEEECCCCCEEEEEECCCCC---EEEEEcCCCceeecccccceeeecc---CCCCceeeeeeecCCccceecc
Confidence 6 6888999999999999999999998 8999999999999997644321111 0000000000
Q ss_pred ------CCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEE
Q 048801 382 ------NVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455 (1715)
Q Consensus 382 ------~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLa 455 (1715)
..............+...|.+++|+|++.+|++|+.||.|++|+... ..+..+.+|...|.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~----------~~~~~~~~~~~~v~~~~ 228 (577)
T 2ymu_A 159 DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG----------QLLQTLTGHSSSVRGVA 228 (577)
T ss_dssp TTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS----------CEEEEEECCSSCEEEEE
T ss_pred cccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCC----------cEEEEEecCCCCEEEEE
Confidence 00000111122334667899999999999999999999999999642 34677889999999999
Q ss_pred EccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCC
Q 048801 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRG 535 (1715)
Q Consensus 456 fspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 535 (1715)
|+|++ ..|++++.||.|++|+...
T Consensus 229 ~s~dg--------------------------~~l~~~~~d~~i~~w~~~~------------------------------ 252 (577)
T 2ymu_A 229 FSPDG--------------------------QTIASASDDKTVKLWNRNG------------------------------ 252 (577)
T ss_dssp ECTTS--------------------------SCEEEEETTSCEEEECTTS------------------------------
T ss_pred ECCCC--------------------------CEEEEEeCCCEEEEEeCCC------------------------------
Confidence 99986 7899999999999998642
Q ss_pred CCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 048801 536 GPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 536 ~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VW 615 (1715)
..+..+.+|...|++++|+|++++|++++.|+.|++|+. +++.+..+.+|...|.+++|+| ++.+|++++.||+|++|
T Consensus 253 ~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w 330 (577)
T 2ymu_A 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLW 330 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEE
Confidence 123345678889999999999999999999999999996 6788899999999999999999 77899999999999999
Q ss_pred ECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc------ccccceeecCCCccEEEcCCCCe
Q 048801 616 DIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK------DAKYDQFFLGDYRPLIRDSLGNV 689 (1715)
Q Consensus 616 Dl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k------~~~~~~~fs~D~r~L~~d~~g~v 689 (1715)
|+. +..+..+..|...|.+++|+|+|++|++++.||.|++|+. +++... .......|++|++.|+....+..
T Consensus 331 ~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~ 408 (577)
T 2ymu_A 331 NRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 408 (577)
T ss_dssp ETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred eCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCE
Confidence 974 5667778888999999999999999999999999999996 444432 22345679999999887654443
Q ss_pred eecccccccCcCCCCCcccCCCCCCCCCccchhhhhhcccccceeecCCCCeEEeeeccccCccCCCCCchhhhcccccC
Q 048801 690 LDQETQLVPHRRNIQDPLCDSSMIPYEEPYQSMYQQRRLGALGIEWRPSSIKLAIGLDFSLGQDYAMPPLEDLERMMEPV 769 (1715)
Q Consensus 690 ld~~tq~~p~~~~~~~~lvD~~~~p~p~~~q~~~q~r~~g~~~l~~sPdg~~lAvg~~~~l~~~~~~~P~~d~~~~i~~~ 769 (1715)
+..... .... .+.+ ....-....++|+|++..++.+.....-.-+.+.. .+-..+...
T Consensus 409 v~~~~~---~~~~----------------~~~~-~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--~~~~~~~~~ 466 (577)
T 2ymu_A 409 VKLWNR---NGQL----------------LQTL-TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--QLLQTLTGH 466 (577)
T ss_dssp EEEECT---TCCE----------------EEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--CEEEEEECC
T ss_pred EEEEeC---CCCE----------------EEEe-cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--CEEEEEcCC
Confidence 221110 0000 0000 00011234689999999999884322111111100 000112334
Q ss_pred CCccccCcccCcccc
Q 048801 770 PEFIDPVYWEPENEV 784 (1715)
Q Consensus 770 p~~i~~~~~~p~~~~ 784 (1715)
...+..+.|-|+...
T Consensus 467 ~~~v~~~~~spd~~~ 481 (577)
T 2ymu_A 467 SSSVRGVAFSPDGQT 481 (577)
T ss_dssp SSCEEEEEECTTSCE
T ss_pred CCCEEEEEEcCCCCE
Confidence 455666777777543
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=431.68 Aligned_cols=438 Identities=14% Similarity=0.177 Sum_probs=325.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC--
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL-- 318 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~-- 318 (1715)
.+.+.+.+++|+|||++||+++ ++.|+||++.++.....+.+|...|++++|+|+|++||+|+.||+|+|||+.++.
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~ 94 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 94 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce
Confidence 4578889999999999999998 5699999999999999999999999999999999999999999999999997654
Q ss_pred ceEEEeCCCCCeEEEEecCCCCcceEEEEecCC----CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 319 PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD----GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 319 ~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D----GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
....+.+|.+.|.+++|+|++. +|++++.+ +.|++||. +.... ...
T Consensus 95 ~~~~~~~~~~~v~~v~fs~dg~---~l~~~~~~~~~~~~v~~wd~--~~~~~-------------------------~l~ 144 (611)
T 1nr0_A 95 LKTTIPVFSGPVKDISWDSESK---RIAAVGEGRERFGHVFLFDT--GTSNG-------------------------NLT 144 (611)
T ss_dssp EEEEEECSSSCEEEEEECTTSC---EEEEEECCSSCSEEEEETTT--CCBCB-------------------------CCC
T ss_pred eeEeecccCCceEEEEECCCCC---EEEEEECCCCceeEEEEeeC--CCCcc-------------------------eec
Confidence 3567889999999999999998 77877764 47888874 32211 123
Q ss_pred CCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccc
Q 048801 395 LQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
.|...|.+++|+|++. .|++|+.|+.|++||..+ ...+..+.+|...|.+++|+|++
T Consensus 145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~---------~~~~~~l~~H~~~V~~v~fspdg------------- 202 (611)
T 1nr0_A 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP---------FKFKSTFGEHTKFVHSVRYNPDG------------- 202 (611)
T ss_dssp CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT---------BEEEEEECCCSSCEEEEEECTTS-------------
T ss_pred CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC---------CeEeeeeccccCceEEEEECCCC-------------
Confidence 4677899999999987 599999999999999865 34567889999999999999987
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW 553 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf 553 (1715)
.+|++++.||+|++||+.+++....+. .......+|...|.+++|
T Consensus 203 -------------~~las~s~D~~i~lwd~~~g~~~~~~~----------------------~~~~~~~~h~~~V~~v~~ 247 (611)
T 1nr0_A 203 -------------SLFASTGGDGTIVLYNGVDGTKTGVFE----------------------DDSLKNVAHSGSVFGLTW 247 (611)
T ss_dssp -------------SEEEEEETTSCEEEEETTTCCEEEECB----------------------CTTSSSCSSSSCEEEEEE
T ss_pred -------------CEEEEEECCCcEEEEECCCCcEeeeec----------------------cccccccccCCCEEEEEE
Confidence 799999999999999988754322110 000112368889999999
Q ss_pred CCCCCEEEEEecCCeEEEEECCCCceEE-------------------------------------------EEecCCCCe
Q 048801 554 SLDNRFVLAAIMDCRICVWNAVDGSLVH-------------------------------------------SLTGHSASS 590 (1715)
Q Consensus 554 SPDG~~LaTgs~DGtI~IWDl~sg~~l~-------------------------------------------tL~gH~~~V 590 (1715)
+|+|++|++|+.|++|+|||+.+++++. .+.+|...|
T Consensus 248 spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v 327 (611)
T 1nr0_A 248 SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAI 327 (611)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCE
Confidence 9999999999999999999998876544 345799999
Q ss_pred EEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE-------------------------------------------
Q 048801 591 YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE------------------------------------------- 627 (1715)
Q Consensus 591 ~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~------------------------------------------- 627 (1715)
++++|+| ++.+|++++.||+|++||+.++++...+.
T Consensus 328 ~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~ 406 (611)
T 1nr0_A 328 TALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAV 406 (611)
T ss_dssp EEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCC
T ss_pred EEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccccccee
Confidence 9999999 78899999999999999998765433210
Q ss_pred ---------------------------------------cccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc---
Q 048801 628 ---------------------------------------IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ--- 665 (1715)
Q Consensus 628 ---------------------------------------~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~--- 665 (1715)
.+...+.+++|+|||++||+|+.||.|+||++.++...
T Consensus 407 ~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~ 486 (611)
T 1nr0_A 407 ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK 486 (611)
T ss_dssp EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred eeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeee
Confidence 01234678999999999999999999999999776431
Q ss_pred ----cccccceeecCCCccEEEcCC-CCe--eecccccccCcCCCCCcccCCCCCCCCCccchhhhhhcccccceeecCC
Q 048801 666 ----KDAKYDQFFLGDYRPLIRDSL-GNV--LDQETQLVPHRRNIQDPLCDSSMIPYEEPYQSMYQQRRLGALGIEWRPS 738 (1715)
Q Consensus 666 ----k~~~~~~~fs~D~r~L~~d~~-g~v--ld~~tq~~p~~~~~~~~lvD~~~~p~p~~~q~~~q~r~~g~~~l~~sPd 738 (1715)
........|+||++.|+.... +.+ ++...... .. ...+ ..........++|+||
T Consensus 487 ~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~--~~--~~~~---------------~~~H~~~V~~v~fspd 547 (611)
T 1nr0_A 487 TIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE--LA--HTNS---------------WTFHTAKVACVSWSPD 547 (611)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE--ES--CCCC---------------CCCCSSCEEEEEECTT
T ss_pred ccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCc--ee--eeee---------------eeecccceeEEEECCC
Confidence 223456789999999886543 332 22111000 00 0000 0001123457899999
Q ss_pred CCeEEeeeccccCccCCCCCchhhh-cccccC-CCccccCcccCcccccc
Q 048801 739 SIKLAIGLDFSLGQDYAMPPLEDLE-RMMEPV-PEFIDPVYWEPENEVIS 786 (1715)
Q Consensus 739 g~~lAvg~~~~l~~~~~~~P~~d~~-~~i~~~-p~~i~~~~~~p~~~~~~ 786 (1715)
|.+||.+.....-.-+.+......- ...... ...+..+.|-|+..+++
T Consensus 548 g~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~l~s 597 (611)
T 1nr0_A 548 NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVS 597 (611)
T ss_dssp SSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEE
T ss_pred CCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCEEEE
Confidence 9999998433211111111100000 011222 45677788888766544
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=412.89 Aligned_cols=354 Identities=26% Similarity=0.431 Sum_probs=311.8
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEE
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRV 311 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrV 311 (1715)
..+.+..+.+|...|.+++|+|+|++|++++.|+.|++|+. +++.+..+.+|...|++++|+|++.+|++++.|+.|++
T Consensus 210 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~ 288 (577)
T 2ymu_A 210 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKL 288 (577)
T ss_dssp TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 45678889999999999999999999999999999999996 57888999999999999999999999999999999999
Q ss_pred EECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 312 WRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 312 WDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
|+. +++.+..+.+|...|++++|+|++. +|++++.||+|++||+..... ..
T Consensus 289 w~~-~~~~~~~~~~h~~~v~~~~~~~~~~---~l~t~~~d~~i~~w~~~~~~~-~~------------------------ 339 (577)
T 2ymu_A 289 WNR-NGQLLQTLTGHSSSVWGVAFSPDGQ---TIASASDDKTVKLWNRNGQHL-QT------------------------ 339 (577)
T ss_dssp EET-TSCEEEEECCCSSCEEEEEECTTSS---EEEEEETTSCEEEEETTSCEE-EE------------------------
T ss_pred EeC-CCcEEEEEecCCCCeEEEEECCCCC---EEEEEeCCCeEEEEeCCCCee-EE------------------------
Confidence 996 5778889999999999999999987 899999999999999764432 11
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~ 471 (1715)
...|...|.+++|+|+|.+|++|+.||.|++|+... ..+..+.+|...|.+++|+|++
T Consensus 340 -~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~----------~~~~~~~~~~~~v~~~~~s~dg----------- 397 (577)
T 2ymu_A 340 -LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG----------QLLQTLTGHSSSVRGVAFSPDG----------- 397 (577)
T ss_dssp -ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC----------CEEEEEECCSSCEEEEEECTTS-----------
T ss_pred -EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC----------CEEEEecCCCCCeEEEEECCCC-----------
Confidence 123466799999999999999999999999999642 3467788999999999999987
Q ss_pred cccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEE
Q 048801 472 KEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMI 551 (1715)
Q Consensus 472 ~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsl 551 (1715)
.+|++++.|+.|++||... .....+..|...|+++
T Consensus 398 ---------------~~l~~~~~d~~v~~~~~~~------------------------------~~~~~~~~~~~~v~~~ 432 (577)
T 2ymu_A 398 ---------------QTIASASDDKTVKLWNRNG------------------------------QLLQTLTGHSSSVWGV 432 (577)
T ss_dssp ---------------SCEEEEETTSEEEEECTTC------------------------------CEEEEEECCSSCEEEE
T ss_pred ---------------CEEEEEeCCCEEEEEeCCC------------------------------CEEEEecCCCCCeEEE
Confidence 7899999999999998542 1234456788899999
Q ss_pred EeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccc
Q 048801 552 VWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRF 631 (1715)
Q Consensus 552 afSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~ 631 (1715)
+|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+| ++.+|++++.|+.|+|||. +++++..+.+|..
T Consensus 433 ~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~sp-d~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~ 509 (577)
T 2ymu_A 433 AFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS 509 (577)
T ss_dssp EECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSCEEEEEETTSEEEEEET-TSCEEEEEECCSS
T ss_pred EECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCC
Confidence 99999999999999999999996 6788999999999999999999 7889999999999999995 7899999999999
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc------ccccceeecCCCccEEEcCC
Q 048801 632 KLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK------DAKYDQFFLGDYRPLIRDSL 686 (1715)
Q Consensus 632 ~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k------~~~~~~~fs~D~r~L~~d~~ 686 (1715)
.|.+++|+|||++||+++.||.|+|||. +|+.+. .......|+||++.|+....
T Consensus 510 ~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~ 569 (577)
T 2ymu_A 510 SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASS 569 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred CEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence 9999999999999999999999999996 565543 23345689999998886543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=453.31 Aligned_cols=473 Identities=19% Similarity=0.229 Sum_probs=338.8
Q ss_pred CCCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 048801 190 MQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKI 269 (1715)
Q Consensus 190 ~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrI 269 (1715)
.|.+.|.++.|.+.|..++.+ ........|.+.+.+.+..+.+|.+.|++++|+|+|++||+|+.||.|+|
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~---------~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASC---------GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI 683 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEE---------ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cccccEEEEEECCCCCEEEEE---------eCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEE
Confidence 567888888888877544433 23333445566677889999999999999999999999999999999999
Q ss_pred EeCCCCcEEEEecCCCCCeEEEEECC--CCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEE
Q 048801 270 WSMETAFCLASCRGHEGDITDLAVSS--NNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLS 347 (1715)
Q Consensus 270 WDl~tgk~l~tL~gHs~~VtsLafSp--Dg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaS 347 (1715)
||+.+++.+..+.+|...|.+++|+| ++.+|++|+.||.|++||+.++.++..+.+|.+.|++++|+|++. +|++
T Consensus 684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~---~l~s 760 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE---LLAS 760 (1249)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT---EEEE
T ss_pred EECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCC---EEEE
Confidence 99999999999999999999999999 566999999999999999999999999999999999999999988 8999
Q ss_pred ecCCCcEEEEecCCCCCcceecCCCCCCCc-----------cCccCCC-------------------CCCCCCCCCCCCC
Q 048801 348 SSDDGTCRIWDARYSQYSPRIYLPKPPDAI-----------TGKSNVP-------------------SNNGPSSSNGLQS 397 (1715)
Q Consensus 348 gS~DGtVrIWDl~tg~~l~~i~~~~~~~~i-----------~g~~~~~-------------------~~~~~~~~~~~h~ 397 (1715)
++.||+|++||+.++.....+......... ......+ ...........|.
T Consensus 761 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~ 840 (1249)
T 3sfz_A 761 CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH 840 (1249)
T ss_dssp EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSS
T ss_pred EECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCC
Confidence 999999999999988765544332211000 0000000 0000011122567
Q ss_pred cceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc----cccccccc
Q 048801 398 HQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS----AMSDAFKE 473 (1715)
Q Consensus 398 ~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~----~~~~~~~~ 473 (1715)
..|.+++|+|++.++++|+.+|.|++|++.++ ..+..+.+|...|.+++|+|++..... +....+..
T Consensus 841 ~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~---------~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSR---------LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 911 (1249)
T ss_dssp SCCCEEEECSSTTEEEEECSSSCEEEEETTTT---------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC---------ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 88999999999999999999999999999864 456778899999999999998621110 00111100
Q ss_pred ccc------------------------------------------------c-cccCCcccCceEEEEcCCCeEEEEecC
Q 048801 474 ENV------------------------------------------------P-KFKNSWFCHDNIVTCSRDGSAIIWIPR 504 (1715)
Q Consensus 474 ~~~------------------------------------------------~-~~~~s~~~~~~LaSgS~DGsIrIWDl~ 504 (1715)
... . .......++..+++|+.||.|.+|++.
T Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~ 991 (1249)
T 3sfz_A 912 KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELP 991 (1249)
T ss_dssp HHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETT
T ss_pred cccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcC
Confidence 000 0 000000134466666666666666666
Q ss_pred CCccCcccccc-cccccccCCCCCCCCCC-CCCCCc----------ccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEE
Q 048801 505 SRRSHGKVGRW-TRAYHLKVPPPPLPPQP-PRGGPR----------QRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 572 (1715)
Q Consensus 505 t~~~~~~~~~~-~~~~~l~~~~~~~~~~~-~~g~~~----------~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IW 572 (1715)
++......... .....+...+....... ...+.+ .....|...|.+++|++++ .+++++.|+.|++|
T Consensus 992 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vw 1070 (1249)
T 3sfz_A 992 NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVW 1070 (1249)
T ss_dssp TTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEE
T ss_pred CCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEE
Confidence 54432211100 00000111000000000 000000 0122455556666666644 34556666777777
Q ss_pred ECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCC
Q 048801 573 NAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG 652 (1715)
Q Consensus 573 Dl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG 652 (1715)
|+.+++.+..+.+|.+.|++++|+| ++.++++++.||+|++||+.+++++..+.+|...|.+++|+|||++||+++.||
T Consensus 1071 d~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg 1149 (1249)
T 3sfz_A 1071 NVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNG 1149 (1249)
T ss_dssp ETTTTCCCEEEECCSSCCCCEEECS-SSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred ECCCCceeEEEcccCCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCC
Confidence 7777777888889999999999999 778889999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCcccccc---------------ccceeecCCCccEEEcC
Q 048801 653 QIYLLNTGQGESQKDA---------------KYDQFFLGDYRPLIRDS 685 (1715)
Q Consensus 653 ~I~IWdl~tGe~~k~~---------------~~~~~fs~D~r~L~~d~ 685 (1715)
.|+||++.+|+..... .....|++|++.|+...
T Consensus 1150 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~ 1197 (1249)
T 3sfz_A 1150 EIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197 (1249)
T ss_dssp CCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES
T ss_pred EEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC
Confidence 9999999998765432 34567999999887654
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=400.55 Aligned_cols=308 Identities=20% Similarity=0.325 Sum_probs=270.8
Q ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC
Q 048801 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD 316 (1715)
Q Consensus 237 ~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t 316 (1715)
..|.||.+.|++++|+|++.+|++|+.||+|+|||+.+++.+.++.+|...|++++|+|++.+|++|+.|++|+|||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC
Q 048801 317 GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396 (1715)
Q Consensus 317 g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h 396 (1715)
+.++..+.+|...|++++|+|++. +|++|+.|++|++||+.++..+..+ ..|
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~~~---~l~s~s~D~~i~~wd~~~~~~~~~~-------------------------~~h 233 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPNGD---HIVSASRDKTIKMWEVQTGYCVKTF-------------------------TGH 233 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSS---EEEEEETTSEEEEEETTTCCEEEEE-------------------------ECC
T ss_pred CceeEEEcCCCCCEEEEEEeCCCC---EEEEEeCCCeEEEEECCCCcEEEEE-------------------------eCC
Confidence 999999999999999999999987 8999999999999999988755443 234
Q ss_pred CcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccc
Q 048801 397 SHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476 (1715)
Q Consensus 397 ~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~ 476 (1715)
...|.+++|+++|.+|++|+.||.|++||+.++. ....+.+|...|.+++|+|+.....
T Consensus 234 ~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~~~------------ 292 (410)
T 1vyh_C 234 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE---------CKAELREHRHVVECISWAPESSYSS------------ 292 (410)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------EEEEECCCSSCEEEEEECCSCGGGG------------
T ss_pred CccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---------eeeEecCCCceEEEEEEcCcccccc------------
Confidence 6679999999999999999999999999998743 4567889999999999998751000
Q ss_pred ccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC
Q 048801 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD 556 (1715)
Q Consensus 477 ~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD 556 (1715)
+.. ............
T Consensus 293 --------------------------~~~---------------------------------------~~~~~~~~~~~~ 307 (410)
T 1vyh_C 293 --------------------------ISE---------------------------------------ATGSETKKSGKP 307 (410)
T ss_dssp --------------------------GGG---------------------------------------CCSCC-------
T ss_pred --------------------------hhh---------------------------------------hccccccccCCC
Confidence 000 000001122346
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEE
Q 048801 557 NRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDG 636 (1715)
Q Consensus 557 G~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~sv 636 (1715)
|.+|++|+.|+.|+|||+.++.++..+.+|...|++++|+| ++.+|++|+.||+|+|||+.+++++..+.+|...|+++
T Consensus 308 g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l 386 (410)
T 1vyh_C 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 386 (410)
T ss_dssp CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE
Confidence 88999999999999999999999999999999999999999 77888999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEC
Q 048801 637 KFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 637 afSPDG~~LAsgs~DG~I~IWdl 659 (1715)
+|+|++.+||+|+.||.|+||++
T Consensus 387 ~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 387 DFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EECSSSSCEEEEETTSEEEEEC-
T ss_pred EEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999999999999999999986
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-38 Score=375.72 Aligned_cols=292 Identities=22% Similarity=0.368 Sum_probs=259.1
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
++...+|.||.+.|++++|+|+|++|++|+.||+|+|||+.++..+..+..|...|.+++|+|++++|++|+.|+.|+||
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCC----ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCC
Q 048801 313 RLPDGL----PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 313 Dl~tg~----~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
++.++. ....+.+|.+.|.++.|++++ .|++++.|++|++||+.+++.+..+
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~l~s~s~d~~i~~wd~~~~~~~~~~-------------------- 180 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN----QIVTSSGDTTCALWDIETGQQTTTF-------------------- 180 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETT----EEEEEETTSCEEEEETTTTEEEEEE--------------------
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCC----cEEEEECCCcEEEEECCCCcEEEEE--------------------
Confidence 998763 456788999999999999886 6899999999999999887654433
Q ss_pred CCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccc
Q 048801 389 PSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~ 468 (1715)
..|...|.+++|+|++.+|++|+.||.|++||+.++ ..+..+.+|...|.+++|+|++
T Consensus 181 -----~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~---------~~~~~~~~h~~~v~~v~~~p~~-------- 238 (340)
T 1got_B 181 -----TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---------MCRQTFTGHESDINAICFFPNG-------- 238 (340)
T ss_dssp -----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---------SEEEEECCCSSCEEEEEECTTS--------
T ss_pred -----cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC---------eeEEEEcCCcCCEEEEEEcCCC--------
Confidence 235677999999999999999999999999999874 3467788999999999999986
Q ss_pred ccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCe
Q 048801 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548 (1715)
Q Consensus 469 ~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V 548 (1715)
..|++|+.||+|++||+++++..... ....+...|
T Consensus 239 ------------------~~l~s~s~d~~v~iwd~~~~~~~~~~---------------------------~~~~~~~~v 273 (340)
T 1got_B 239 ------------------NAFATGSDDATCRLFDLRADQELMTY---------------------------SHDNIICGI 273 (340)
T ss_dssp ------------------SEEEEEETTSCEEEEETTTTEEEEEE---------------------------CCTTCCSCE
T ss_pred ------------------CEEEEEcCCCcEEEEECCCCcEEEEE---------------------------ccCCcccce
Confidence 79999999999999999864321110 011233469
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 549 NMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 549 tslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
++++|+|+|++|++|+.|+.|+|||+.+++.+..+.+|.+.|.+++|+| ++.+|++|+.||+|+|||
T Consensus 274 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred EEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcC-CCCEEEEEcCCccEEecC
Confidence 9999999999999999999999999999999999999999999999999 788899999999999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-38 Score=369.16 Aligned_cols=295 Identities=24% Similarity=0.359 Sum_probs=254.5
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
++..++|.+|.+.|++++|+|+|++|++|+.||.|+|||+.++..+..+.+|...|.+++|+|++++|++|+.|++|+||
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCC
Q 048801 313 RLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392 (1715)
Q Consensus 313 Dl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~ 392 (1715)
|+.+++.+..+.+|...|++++|+|++. +|++|+.||+|++||+.++......
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~sgs~D~~v~lWd~~~~~~~~~~------------------------ 135 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKP---YVLSGSDDLTVKLWNWENNWALEQT------------------------ 135 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSS---EEEEEETTSCEEEEEGGGTTEEEEE------------------------
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCC---EEEEECCCCeEEEEECCCCcchhhh------------------------
Confidence 9999999999999999999999999987 8999999999999999866322111
Q ss_pred CCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccc
Q 048801 393 NGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471 (1715)
Q Consensus 393 ~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~ 471 (1715)
...|...|.+++|+| ++.+|++|+.|+.|++||+..... ......+
T Consensus 136 ~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~--------~~~~~~~------------------------- 182 (304)
T 2ynn_A 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--------NFTLTTG------------------------- 182 (304)
T ss_dssp ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC--------SEEEECC-------------------------
T ss_pred hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc--------cceeccC-------------------------
Confidence 124567799999999 678999999999999999865311 0011111
Q ss_pred cccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEE
Q 048801 472 KEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMI 551 (1715)
Q Consensus 472 ~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsl 551 (1715)
+...|..+
T Consensus 183 ------------------------------------------------------------------------~~~~v~~~ 190 (304)
T 2ynn_A 183 ------------------------------------------------------------------------QERGVNYV 190 (304)
T ss_dssp ------------------------------------------------------------------------CTTCEEEE
T ss_pred ------------------------------------------------------------------------CcCcEEEE
Confidence 12234555
Q ss_pred EeCC--CCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcc
Q 048801 552 VWSL--DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG 629 (1715)
Q Consensus 552 afSP--DG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h 629 (1715)
+|+| ++.+|++|+.|++|+|||+.+++++..+.+|...|.+++|+| ++.+|++|+.||+|+|||+.+++++..+..|
T Consensus 191 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~ 269 (304)
T 2ynn_A 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (304)
T ss_dssp EECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence 5654 778999999999999999999999999999999999999999 7789999999999999999999999999988
Q ss_pred cceEEEEEEcCCCC--EEEEEeCCCeEEEEECCC
Q 048801 630 RFKLVDGKFSPDGT--SIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 630 ~~~V~svafSPDG~--~LAsgs~DG~I~IWdl~t 661 (1715)
...+.+++|+|+|. +||+|+. ..+.+|++..
T Consensus 270 ~~~~~~~~~~~~~~~~~~asg~~-~g~~~~~~~~ 302 (304)
T 2ynn_A 270 LERSWCIATHPTGRKNYIASGFD-NGFTVLSLGN 302 (304)
T ss_dssp SSSEEEEEECTTCGGGCEEEEET-TEEEEEECC-
T ss_pred CccEEEEEECCCCCceEEEEecC-CceEEEEecc
Confidence 89999999999886 4666655 5577888764
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-38 Score=380.83 Aligned_cols=345 Identities=14% Similarity=0.220 Sum_probs=287.9
Q ss_pred eEEEEcCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeC----CCCc------EEEEecC----------CCCCeEEEEE
Q 048801 235 NIKKLRGHRDAVYCAIFDRSGR-FVITGSDDRLVKIWSM----ETAF------CLASCRG----------HEGDITDLAV 293 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG~-~LaTGS~DGtIrIWDl----~tgk------~l~tL~g----------Hs~~VtsLaf 293 (1715)
.......|.+.|++++|+|+|+ +||+|+.||.|+||++ .+++ ....+.. |.+.|++++|
T Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (425)
T 1r5m_A 37 KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAW 116 (425)
T ss_dssp EECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEE
T ss_pred hheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEE
Confidence 3334456779999999999999 9999999999999999 8888 4555554 6889999999
Q ss_pred CCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCC
Q 048801 294 SSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKP 373 (1715)
Q Consensus 294 SpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~ 373 (1715)
+|++++|++|+.||.|+||| .++..+..+.+|...|++++|+|++. +|++++.||.|++||+.+++.+..+.....
T Consensus 117 s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 192 (425)
T 1r5m_A 117 SHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGT---HIISMDVENVTILWNVISGTVMQHFELKET 192 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSS---EEEEEETTCCEEEEETTTTEEEEEECCC--
T ss_pred cCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCC---EEEEEecCCeEEEEECCCCcEEEEeecccc
Confidence 99999999999999999999 67888999999999999999999988 899999999999999998876665543221
Q ss_pred CCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeE
Q 048801 374 PDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNY 453 (1715)
Q Consensus 374 ~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~s 453 (1715)
.... ............+.+++|++++ .+++++.+|.|++||+.++. .+..+..|...|.+
T Consensus 193 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~---------~~~~~~~~~~~i~~ 252 (425)
T 1r5m_A 193 GGSS----------INAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKT---------PTGKLIGHHGPISV 252 (425)
T ss_dssp -----------------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSS---------CSEEECCCSSCEEE
T ss_pred Cccc----------eeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCc---------eeeeeccCCCceEE
Confidence 1000 0001111223348899999986 57888899999999998643 35567789999999
Q ss_pred EEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCC
Q 048801 454 VQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPP 533 (1715)
Q Consensus 454 Lafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 533 (1715)
++|+|++ ..|++++.||.|++||+.+++
T Consensus 253 ~~~~~~~--------------------------~~l~~~~~d~~i~i~d~~~~~-------------------------- 280 (425)
T 1r5m_A 253 LEFNDTN--------------------------KLLLSASDDGTLRIWHGGNGN-------------------------- 280 (425)
T ss_dssp EEEETTT--------------------------TEEEEEETTSCEEEECSSSBS--------------------------
T ss_pred EEECCCC--------------------------CEEEEEcCCCEEEEEECCCCc--------------------------
Confidence 9999986 799999999999999988643
Q ss_pred CCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 048801 534 RGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTI 613 (1715)
Q Consensus 534 ~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~ 613 (1715)
....+..|...|.+++|+|++ +|++++.|+.|++||+.+++.+..+..|...|.+++|+| ++.+|++++.||.|+
T Consensus 281 ---~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~ 355 (425)
T 1r5m_A 281 ---SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVN 355 (425)
T ss_dssp ---CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred ---cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCEEEEEECCCeEE
Confidence 233445678899999999999 999999999999999999999999999999999999999 778999999999999
Q ss_pred EEECCCCc--------------------eEEEEEcccc--eEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 614 VWDIWEGT--------------------PIRIYEIGRF--KLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 614 VWDl~tgk--------------------~l~tl~~h~~--~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
|||+.+++ ++..+..|.. .|.+++|+|+|++|++++.||.|+||++.
T Consensus 356 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 356 VYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 99999888 8899998866 99999999999999999999999999984
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-38 Score=372.36 Aligned_cols=291 Identities=23% Similarity=0.343 Sum_probs=259.6
Q ss_pred eeEEEEcCCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEeCCCCcE--EEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 048801 234 QNIKKLRGHRDAVYCAIFDRS----GRFVITGSDDRLVKIWSMETAFC--LASCRGHEGDITDLAVSSNNTLVASASNDF 307 (1715)
Q Consensus 234 k~l~~L~GH~~~Vt~VafSpD----G~~LaTGS~DGtIrIWDl~tgk~--l~tL~gHs~~VtsLafSpDg~lLASGS~DG 307 (1715)
...+.+.+|.+.|++|+|+++ +.+|+||+.|++|+||++.++.. ...+.+|...|.+++|++++.+|++|+.|+
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 345677899999999999974 67999999999999999987654 457899999999999999999999999999
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
+|+|||+.+++.+..+..|...+.+++|+|++. +|++++.||.|++|++.++.....+.
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~---~l~~g~~dg~v~i~~~~~~~~~~~~~------------------ 161 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ---YLATGTHVGKVNIFGVESGKKEYSLD------------------ 161 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEECTTSS---EEEEECTTSEEEEEETTTCSEEEEEE------------------
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEEEECCCCC---EEEEEcCCCcEEEEEcCCCceeEEec------------------
Confidence 999999999999999999999999999999998 89999999999999998876543331
Q ss_pred CCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccc
Q 048801 388 GPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAM 467 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~ 467 (1715)
.+...|.+++|+|+|++|++|+.||.|++||+.++ ..+..+.+|...|.+++|+|++
T Consensus 162 -------~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~l~~spd~------- 218 (321)
T 3ow8_A 162 -------TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG---------KLLHTLEGHAMPIRSLTFSPDS------- 218 (321)
T ss_dssp -------CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCCCEEEECTTS-------
T ss_pred -------CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC---------cEEEEEcccCCceeEEEEcCCC-------
Confidence 23456999999999999999999999999999874 4567788999999999999986
Q ss_pred cccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCC
Q 048801 468 SDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG 547 (1715)
Q Consensus 468 ~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~ 547 (1715)
.+|++++.||.|++||++++. ....+.+|...
T Consensus 219 -------------------~~l~s~s~dg~i~iwd~~~~~-----------------------------~~~~~~~h~~~ 250 (321)
T 3ow8_A 219 -------------------QLLVTASDDGYIKIYDVQHAN-----------------------------LAGTLSGHASW 250 (321)
T ss_dssp -------------------CEEEEECTTSCEEEEETTTCC-----------------------------EEEEECCCSSC
T ss_pred -------------------CEEEEEcCCCeEEEEECCCcc-----------------------------eeEEEcCCCCc
Confidence 799999999999999998633 23345678889
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 548 VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
|.+++|+|++.+|++|+.|++|+|||+.+++++..+.+|...|.+++|+| ++.+|++++.||+|+|||+
T Consensus 251 v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 251 VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCCEEEEEC
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEeC
Confidence 99999999999999999999999999999999999999999999999999 7788999999999999996
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=431.23 Aligned_cols=471 Identities=17% Similarity=0.158 Sum_probs=335.7
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~ 315 (1715)
...+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.+..+.+|.+.|++++|+|++++||+|+.||+|+|||+.
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCC
Q 048801 316 DGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL 395 (1715)
Q Consensus 316 tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~ 395 (1715)
+++.+..+.+|...|++++|+|++... ++++++.||.|++||+.++.....+ ..
T Consensus 688 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~sg~~d~~v~vwd~~~~~~~~~~-------------------------~~ 741 (1249)
T 3sfz_A 688 TGKLVHTYDEHSEQVNCCHFTNKSNHL-LLATGSNDFFLKLWDLNQKECRNTM-------------------------FG 741 (1249)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSCC-EEEEEETTSCEEEEETTSSSEEEEE-------------------------CC
T ss_pred CCceEEEEcCCCCcEEEEEEecCCCce-EEEEEeCCCeEEEEECCCcchhhee-------------------------cC
Confidence 999999999999999999999965433 7999999999999999987754433 23
Q ss_pred CCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCce----eeeeecCCCCCeeEEEEccCccccccccc---
Q 048801 396 QSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIH----ELDVLSGHENDVNYVQFSGCAVASRSAMS--- 468 (1715)
Q Consensus 396 h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~----~l~~l~gH~~~V~sLafspdg~as~~~~~--- 468 (1715)
|...|++++|+|+|.+|++|+.||.|++||+.++.......... .......+...|.+++|+|++........
T Consensus 742 h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v 821 (1249)
T 3sfz_A 742 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKV 821 (1249)
T ss_dssp CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEE
T ss_pred CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcE
Confidence 56779999999999999999999999999997653210000000 00000011123344444443311100000
Q ss_pred ccccccc-----------ccccc--CCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCC
Q 048801 469 DAFKEEN-----------VPKFK--NSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRG 535 (1715)
Q Consensus 469 ~~~~~~~-----------~~~~~--~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 535 (1715)
..+.... ..... .....+..+++++.||.|++|++.++.
T Consensus 822 ~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~---------------------------- 873 (1249)
T 3sfz_A 822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL---------------------------- 873 (1249)
T ss_dssp EEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE----------------------------
T ss_pred EEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc----------------------------
Confidence 0000000 00000 000124789999999999999998643
Q ss_pred CCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc-----------------------------eEEEE---
Q 048801 536 GPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS-----------------------------LVHSL--- 583 (1715)
Q Consensus 536 ~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~-----------------------------~l~tL--- 583 (1715)
....+.+|...|++++|+|+|.+|++++.|+.|++|++.++. .+..+
T Consensus 874 -~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1249)
T 3sfz_A 874 -KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGK 952 (1249)
T ss_dssp -EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEES
T ss_pred -eeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecC
Confidence 233456788899999999999999999999999999975311 00111
Q ss_pred -----ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 584 -----TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 584 -----~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
..+...+.+++|+| ++.++++|+.||.|++|++.+++.+..+.+|...|.+++|+|+|++|++++.||.|++|+
T Consensus 953 ~~~~~~~~~~~i~~~~~sp-~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 953 TGQIDYLPEAQVSCCCLSP-HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp SCCEEEECCSCEEEEEECT-TSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred cceEEEcccCcEEEEEEcC-CCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 12356789999999 778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccc-----ccccceeecCCCccEEEcCCCCeeecccccccCcCCCCCcccCCCCCCCCCccchhhhhhcccccce
Q 048801 659 TGQGESQK-----DAKYDQFFLGDYRPLIRDSLGNVLDQETQLVPHRRNIQDPLCDSSMIPYEEPYQSMYQQRRLGALGI 733 (1715)
Q Consensus 659 l~tGe~~k-----~~~~~~~fs~D~r~L~~d~~g~vld~~tq~~p~~~~~~~~lvD~~~~p~p~~~q~~~q~r~~g~~~l 733 (1715)
+.+++... .......|++++..++...+|.+.-.+.... .....+ ....-....+
T Consensus 1032 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~---~~~~~~-----------------~~~~~~v~~~ 1091 (1249)
T 3sfz_A 1032 WQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG---RIERDF-----------------TCHQGTVLSC 1091 (1249)
T ss_dssp TTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTT---CCCEEE-----------------ECCSSCCCCE
T ss_pred CCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCC---ceeEEE-----------------cccCCcEEEE
Confidence 99987653 2234456788877666666665422111100 000000 0001124568
Q ss_pred eecCCCCeEEeeeccccCccCCCCCchhhhcccccCCCccccCcccCccc
Q 048801 734 EWRPSSIKLAIGLDFSLGQDYAMPPLEDLERMMEPVPEFIDPVYWEPENE 783 (1715)
Q Consensus 734 ~~sPdg~~lAvg~~~~l~~~~~~~P~~d~~~~i~~~p~~i~~~~~~p~~~ 783 (1715)
+|+|++..++++.....-.-+.+... ..-..+......|..+.|-|+..
T Consensus 1092 ~~s~d~~~l~s~s~d~~v~iwd~~~~-~~~~~l~~h~~~v~~~~~s~dg~ 1140 (1249)
T 3sfz_A 1092 AISSDATKFSSTSADKTAKIWSFDLL-SPLHELKGHNGCVRCSAFSLDGI 1140 (1249)
T ss_dssp EECSSSSSCEEECCSSCCCEECSSSS-SCSBCCCCCSSCEEEEEECSSSS
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCc-ceeeeeccCCCcEEEEEECCCCC
Confidence 99999999999854322111111110 00011233445566777777754
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-38 Score=381.82 Aligned_cols=311 Identities=21% Similarity=0.342 Sum_probs=264.6
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEE
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRV 311 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrV 311 (1715)
...+.++|.||.+.|++++|+|+|++|+||+.||+|+|||+.+++.+..+.+|...|.+++|+|+|++||+|+.|+.|+|
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCC-------CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 312 WRLPDG-------LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 312 WDl~tg-------~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
|++.+. .....+.+|.+.|.++.|+|++.. .|++|+.|++|++||+.+++.+..+...
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~~------------- 199 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET--RLITGSGDQTCVLWDVTTGQRISIFGSE------------- 199 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS--CEEEECTTSCEEEECTTTCCEEEEECCC-------------
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCC--EEEEECCCCcEEEEEcCCCcEEEEeecc-------------
Confidence 999753 245667899999999999997653 6999999999999999988765443211
Q ss_pred CCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccc
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVAS 463 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as 463 (1715)
....|...|.+++|++ ++.+|++|+.||.|++||++.. ...+..+.+|...|.+++|+|++
T Consensus 200 -------~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~--------~~~~~~~~~h~~~v~~v~~~p~~--- 261 (380)
T 3iz6_a 200 -------FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT--------SRAVRTYHGHEGDINSVKFFPDG--- 261 (380)
T ss_dssp -------SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT--------CCCCEEECCCSSCCCEEEECTTS---
T ss_pred -------cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC--------CcceEEECCcCCCeEEEEEecCC---
Confidence 1234677899999987 8899999999999999999742 23466788999999999999986
Q ss_pred cccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccC
Q 048801 464 RSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLP 543 (1715)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~ 543 (1715)
..|++|+.||+|++||++++.....+.. . ......
T Consensus 262 -----------------------~~l~s~s~D~~i~lwd~~~~~~~~~~~~---------~-------------~~~~~~ 296 (380)
T 3iz6_a 262 -----------------------QRFGTGSDDGTCRLFDMRTGHQLQVYNR---------E-------------PDRNDN 296 (380)
T ss_dssp -----------------------SEEEEECSSSCEEEEETTTTEEEEEECC---------C-------------CSSSCC
T ss_pred -----------------------CeEEEEcCCCeEEEEECCCCcEEEEecc---------c-------------cccccc
Confidence 7999999999999999997653221100 0 000112
Q ss_pred CCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEE----ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC
Q 048801 544 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL----TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 544 h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL----~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t 619 (1715)
+...|++++|+|+|++|++|+.||.|+|||+.+++.+..+ .+|.+.|++++|+| ++.+|++|+.||+|+||++..
T Consensus 297 ~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 297 ELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-DGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp SSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS-SSSEEEEECTTSCEEEEECCS
T ss_pred ccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC-CCCEEEEeeCCCCEEEEecCC
Confidence 2345899999999999999999999999999999998888 68999999999999 788999999999999999976
Q ss_pred Cc
Q 048801 620 GT 621 (1715)
Q Consensus 620 gk 621 (1715)
++
T Consensus 376 ~~ 377 (380)
T 3iz6_a 376 HR 377 (380)
T ss_dssp SS
T ss_pred Cc
Confidence 54
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-37 Score=394.05 Aligned_cols=444 Identities=12% Similarity=0.138 Sum_probs=329.3
Q ss_pred CCCCCceeeeeeccccCcccccCCCCcccccccccccCccccccc----eeEEEEcCCCCC-eEEEEEcC--CCCEEEEE
Q 048801 189 HMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKM----QNIKKLRGHRDA-VYCAIFDR--SGRFVITG 261 (1715)
Q Consensus 189 ~~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----k~l~~L~GH~~~-Vt~VafSp--DG~~LaTG 261 (1715)
..+...|..+.+.+.|..++.... . ....+.+.+. +.+..|.+|.+. |++++|+| ++++||+|
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~~-~---------~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~ 84 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPCG-K---------SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSG 84 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEET-T---------EEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEE
T ss_pred CCccCceeEEEECCCCCEEEEecC-C---------eEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEe
Confidence 345677888999888865554431 1 1122333445 788899999999 99999999 99999999
Q ss_pred eCCCcEEEEeCCCC--------cEEEEecCCCCCeEEEEECCCCCEEEEEeCC----CeeEEEECCCCCceEEEeCCCCC
Q 048801 262 SDDRLVKIWSMETA--------FCLASCRGHEGDITDLAVSSNNTLVASASND----FVIRVWRLPDGLPISVLRGHTGA 329 (1715)
Q Consensus 262 S~DGtIrIWDl~tg--------k~l~tL~gHs~~VtsLafSpDg~lLASGS~D----GtIrVWDl~tg~~l~~L~gH~~~ 329 (1715)
+.||.|+|||+.++ ..+..+.+|...|.+++|+|++++|++++.+ +.|++|| ++..+..+.+|...
T Consensus 85 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~ 162 (615)
T 1pgu_A 85 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQR 162 (615)
T ss_dssp ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSC
T ss_pred cCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCcc
Confidence 99999999999755 7788899999999999999999999999987 6888887 67888999999999
Q ss_pred eEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCc---ceeEEEEc
Q 048801 330 VTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH---QILCCAYN 406 (1715)
Q Consensus 330 VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~---~VtslafS 406 (1715)
|++++|+|++.. .|++++.||.|++||+.+++.+..+. .|.. .|.+++|+
T Consensus 163 v~~~~~~~~~~~--~l~~~~~d~~v~vwd~~~~~~~~~~~-------------------------~~~~~~~~v~~~~~~ 215 (615)
T 1pgu_A 163 INACHLKQSRPM--RSMTVGDDGSVVFYQGPPFKFSASDR-------------------------THHKQGSFVRDVEFS 215 (615)
T ss_dssp EEEEEECSSSSC--EEEEEETTTEEEEEETTTBEEEEEEC-------------------------SSSCTTCCEEEEEEC
T ss_pred EEEEEECCCCCc--EEEEEeCCCcEEEEeCCCcceeeeec-------------------------ccCCCCceEEEEEEC
Confidence 999999999863 69999999999999998776544432 2344 79999999
Q ss_pred cC-CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee-c---CCCCCeeEEEEccCcccccc----ccccccccccc-
Q 048801 407 AN-GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL-S---GHENDVNYVQFSGCAVASRS----AMSDAFKEENV- 476 (1715)
Q Consensus 407 pd-G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l-~---gH~~~V~sLafspdg~as~~----~~~~~~~~~~~- 476 (1715)
|+ +.+|++|+.||.|++||+.+++ .+..+ . .|...|.+++|+ ++..... +....+.....
T Consensus 216 ~~~~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~ 285 (615)
T 1pgu_A 216 PDSGEFVITVGSDRKISCFDGKSGE---------FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSK 285 (615)
T ss_dssp STTCCEEEEEETTCCEEEEETTTCC---------EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCC---------EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCc
Confidence 99 9999999999999999998753 34555 5 899999999998 5421111 11111111100
Q ss_pred --------------ccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccc-ccccccCCCC---------------
Q 048801 477 --------------PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWT-RAYHLKVPPP--------------- 526 (1715)
Q Consensus 477 --------------~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~-~~~~l~~~~~--------------- 526 (1715)
......+.....+++++.||.|++||+.+++....+.... ....+.. +.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 286 CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSS 364 (615)
T ss_dssp EEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTT
T ss_pred EEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEc
Confidence 0001112256788888888999999887654332221111 1111111 00
Q ss_pred -------------------CCCCC-CCC-------------------------------------------CCCcccccC
Q 048801 527 -------------------PLPPQ-PPR-------------------------------------------GGPRQRLLP 543 (1715)
Q Consensus 527 -------------------~~~~~-~~~-------------------------------------------g~~~~~l~~ 543 (1715)
..... ... .........
T Consensus 365 ~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (615)
T 1pgu_A 365 SSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 444 (615)
T ss_dssp TEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred hhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc
Confidence 00000 000 000000112
Q ss_pred CCCCeeEEEeCCCCCEEEEEec-CCeEEEEECCCCceE-EEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 544 TPRGVNMIVWSLDNRFVLAAIM-DCRICVWNAVDGSLV-HSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 544 h~~~VtslafSPDG~~LaTgs~-DGtI~IWDl~sg~~l-~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
+...+.+++|+ +.+|++++. |+.|++||+.+++.. ..+.+|...|++++|+| ++.+|++|+.||.|+|||+.+++
T Consensus 445 ~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~ 521 (615)
T 1pgu_A 445 LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSRE 521 (615)
T ss_dssp CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTE
T ss_pred cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECC-CCCEEEEcCCCCeEEEeeCCCCc
Confidence 44556677777 778888888 999999999887766 66778999999999999 78899999999999999999999
Q ss_pred eEEEEEc-ccceEEEEEEcC----------CCCEEEEEeCCCeEEEEECCCC-cccc------ccccceeecCCCccEEE
Q 048801 622 PIRIYEI-GRFKLVDGKFSP----------DGTSIVLSDDVGQIYLLNTGQG-ESQK------DAKYDQFFLGDYRPLIR 683 (1715)
Q Consensus 622 ~l~tl~~-h~~~V~svafSP----------DG~~LAsgs~DG~I~IWdl~tG-e~~k------~~~~~~~fs~D~r~L~~ 683 (1715)
++..+.+ |...|.+++|+| +|++||+++.||.|+||++.++ +... .......|++|++ |+.
T Consensus 522 ~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s 600 (615)
T 1pgu_A 522 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVS 600 (615)
T ss_dssp EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEE
T ss_pred ceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEE
Confidence 9999887 889999999999 9999999999999999999987 4432 2345568999999 776
Q ss_pred cCC
Q 048801 684 DSL 686 (1715)
Q Consensus 684 d~~ 686 (1715)
...
T Consensus 601 ~~~ 603 (615)
T 1pgu_A 601 SGA 603 (615)
T ss_dssp EET
T ss_pred ecC
Confidence 543
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=366.58 Aligned_cols=292 Identities=18% Similarity=0.236 Sum_probs=258.2
Q ss_pred CcEEEEecCCCCCeEEEEECCC----CCEEEEEeCCCeeEEEECCCCCc--eEEEeCCCCCeEEEEecCCCCcceEEEEe
Q 048801 275 AFCLASCRGHEGDITDLAVSSN----NTLVASASNDFVIRVWRLPDGLP--ISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSpD----g~lLASGS~DGtIrVWDl~tg~~--l~~L~gH~~~VtsLafSPdg~~~~~LaSg 348 (1715)
+.....+.+|.+.|++++|+++ +.+||+|+.|++|+||++.++.. ...+.+|...|.+++|++++. +++++
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~---~l~s~ 98 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLP---IAASS 98 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSS---EEEEE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCC---EEEEE
Confidence 3445667899999999999984 67999999999999999987653 456889999999999999987 89999
Q ss_pred cCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCC
Q 048801 349 SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 349 S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t 428 (1715)
+.|++|++||+.+++.+..+.. +...+.+++|+|++++|++|+.+|.|++|++.+
T Consensus 99 s~D~~i~lWd~~~~~~~~~~~~-------------------------~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~ 153 (321)
T 3ow8_A 99 SLDAHIRLWDLENGKQIKSIDA-------------------------GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 153 (321)
T ss_dssp ETTSEEEEEETTTTEEEEEEEC-------------------------CTTCCCCEEECTTSSEEEEECTTSEEEEEETTT
T ss_pred eCCCcEEEEECCCCCEEEEEeC-------------------------CCccEEEEEECCCCCEEEEEcCCCcEEEEEcCC
Confidence 9999999999998876554421 234578899999999999999999999999987
Q ss_pred CCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCcc
Q 048801 429 SSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS 508 (1715)
Q Consensus 429 ~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~ 508 (1715)
+. ....+..|...|.+++|+|++ .+|++|+.||.|++||+.+++
T Consensus 154 ~~---------~~~~~~~~~~~v~~~~~spdg--------------------------~~lasg~~dg~i~iwd~~~~~- 197 (321)
T 3ow8_A 154 GK---------KEYSLDTRGKFILSIAYSPDG--------------------------KYLASGAIDGIINIFDIATGK- 197 (321)
T ss_dssp CS---------EEEEEECSSSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEETTTTE-
T ss_pred Cc---------eeEEecCCCceEEEEEECCCC--------------------------CEEEEEcCCCeEEEEECCCCc-
Confidence 53 355677888899999999987 799999999999999998643
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCC
Q 048801 509 HGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSA 588 (1715)
Q Consensus 509 ~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~ 588 (1715)
.+..+.+|...|.+++|+|++++|++|+.|+.|+|||+.+++++..+.+|..
T Consensus 198 ----------------------------~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~ 249 (321)
T 3ow8_A 198 ----------------------------LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 249 (321)
T ss_dssp ----------------------------EEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS
T ss_pred ----------------------------EEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC
Confidence 2334556788999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 589 SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 589 ~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
.|.+++|+| ++.+|++|+.||+|+|||+.+++++..+..|...|.+++|+|+|.+|++++.||.|+|||+
T Consensus 250 ~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 250 WVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred ceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999999999 7788999999999999999999999999999999999999999999999999999999996
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-37 Score=368.69 Aligned_cols=323 Identities=19% Similarity=0.302 Sum_probs=256.1
Q ss_pred cceeEEEEcCCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEE---EecCCCCCeEEEEECCCCCEEEEEeCCC
Q 048801 232 KMQNIKKLRGHRD-AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLA---SCRGHEGDITDLAVSSNNTLVASASNDF 307 (1715)
Q Consensus 232 ~~k~l~~L~GH~~-~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~---tL~gHs~~VtsLafSpDg~lLASGS~DG 307 (1715)
.++++.+|.+|.+ .|++++|+|+|++||+|+.|++|+||++.++.... ...+|...|++++|+|++++||+|+.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 4567889999998 99999999999999999999999999998876432 2368999999999999999999999999
Q ss_pred eeEEEECCCC--CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 308 VIRVWRLPDG--LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 308 tIrVWDl~tg--~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
+|+||++.++ .++..+.+|...|++++|+|++. +|++++.|++|++||+..+.....+.
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~---~l~s~s~D~~v~iwd~~~~~~~~~~~---------------- 144 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN---LLATCSRDKSVWVWEVDEEDEYECVS---------------- 144 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS---EEEEEETTSCEEEEEECTTSCEEEEE----------------
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC---EEEEEECCCeEEEEECCCCCCeEEEE----------------
Confidence 9999999876 45778899999999999999987 89999999999999998654322111
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~ 465 (1715)
....|...|.+++|+|++.+|++|+.|+.|++|++..+. ......+.+|...|.+++|+|++
T Consensus 145 ------~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~-------~~~~~~~~~h~~~v~~l~~sp~g----- 206 (345)
T 3fm0_A 145 ------VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD-------WVCCATLEGHESTVWSLAFDPSG----- 206 (345)
T ss_dssp ------EECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTE-------EEEEEEECCCSSCEEEEEECTTS-----
T ss_pred ------EecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCC-------EEEEEEecCCCCceEEEEECCCC-----
Confidence 122456779999999999999999999999999987542 23456788999999999999986
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccC-C
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLP-T 544 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~-h 544 (1715)
.+|++++.||+|+||+.........+. . .........+..+.+ |
T Consensus 207 ---------------------~~l~s~s~D~~v~iW~~~~~~~~~~~~---------~-----~~~~~~~~~~~~~~~~h 251 (345)
T 3fm0_A 207 ---------------------QRLASCSDDRTVRIWRQYLPGNEQGVA---------C-----SGSDPSWKCICTLSGFH 251 (345)
T ss_dssp ---------------------SEEEEEETTSCEEEEEEECTTCTTCCC---------C-----C---CEEEEEEEECSSC
T ss_pred ---------------------CEEEEEeCCCeEEEeccccCCCCccce---------e-----eccCCccceeEEecCCC
Confidence 799999999999999975321100000 0 000000011122233 7
Q ss_pred CCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc---------eEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 048801 545 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS---------LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 545 ~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~---------~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VW 615 (1715)
...|.+++|+|++..|++++.|+.|++|+...+. ....+.+|...|++|+|+|+++.+|++|+.||+|+||
T Consensus 252 ~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W 331 (345)
T 3fm0_A 252 SRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331 (345)
T ss_dssp SSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred CCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEE
Confidence 7889999999999999999999999999987542 1223358999999999999666799999999999999
Q ss_pred ECCCCceEEEE
Q 048801 616 DIWEGTPIRIY 626 (1715)
Q Consensus 616 Dl~tgk~l~tl 626 (1715)
++.+++.+..+
T Consensus 332 ~~~~~~~~~~~ 342 (345)
T 3fm0_A 332 KYQRPEGLHHH 342 (345)
T ss_dssp EECC-------
T ss_pred EecCCCCcccc
Confidence 99888766544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=403.81 Aligned_cols=362 Identities=20% Similarity=0.276 Sum_probs=302.7
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
++..+.|.+|.+.|++++|+|+|++||+|+.||.|+|||+.++..+..+.+|.+.|++++|+|++++||+|+.||.|+||
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCC
Q 048801 313 RLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392 (1715)
Q Consensus 313 Dl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~ 392 (1715)
|+.+++.+..+.+|.+.|++++|+|++. +|++++.||.|++||+.++......
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~------------------------ 135 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKP---YVLSGSDDLTVKLWNWENNWALEQT------------------------ 135 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSS---EEEEEETTSEEEEEEGGGTSEEEEE------------------------
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeCCCC---EEEEEcCCCEEEEEECCCCceEEEE------------------------
Confidence 9999999999999999999999999998 8999999999999999876322111
Q ss_pred CCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee-cCCCCCeeEEEEcc--Cccccccccc
Q 048801 393 NGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL-SGHENDVNYVQFSG--CAVASRSAMS 468 (1715)
Q Consensus 393 ~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l-~gH~~~V~sLafsp--dg~as~~~~~ 468 (1715)
...|...|.+++|+| ++..|++++.||.|++||+.++.. ...+ ..+...|.+++|+| ++
T Consensus 136 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~-------- 198 (814)
T 3mkq_A 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---------NFTLTTGQERGVNYVDYYPLPDK-------- 198 (814)
T ss_dssp EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC---------SEEEECCCTTCCCEEEECCSTTC--------
T ss_pred EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc---------eeEEecCCCCCEEEEEEEECCCC--------
Confidence 123566799999999 889999999999999999976432 2233 34458999999998 54
Q ss_pred ccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCe
Q 048801 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548 (1715)
Q Consensus 469 ~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V 548 (1715)
..|++++.||.|++||+.++. ....+..|...|
T Consensus 199 ------------------~~l~~~~~dg~i~~~d~~~~~-----------------------------~~~~~~~~~~~v 231 (814)
T 3mkq_A 199 ------------------PYMITASDDLTIKIWDYQTKS-----------------------------CVATLEGHMSNV 231 (814)
T ss_dssp ------------------CEEEEECTTSEEEEEETTTTE-----------------------------EEEEEECCSSCE
T ss_pred ------------------CEEEEEeCCCEEEEEECCCCc-----------------------------EEEEEcCCCCCE
Confidence 799999999999999997643 223445678889
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEE--
Q 048801 549 NMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY-- 626 (1715)
Q Consensus 549 tslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl-- 626 (1715)
.+++|+|++.+|++++.||.|++||+.+++.+..+..|...|.+++|+|++..++++++.++.+.+|++..+.....+
T Consensus 232 ~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (814)
T 3mkq_A 232 SFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDP 311 (814)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECS
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECC
Confidence 999999999999999999999999999999999999999999999999965555445556777999987654322221
Q ss_pred -----------------------------------------EcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 627 -----------------------------------------EIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 627 -----------------------------------------~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
..+...+.+++|+|+|++|++++ +|.+.+|++......
T Consensus 312 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~ 390 (814)
T 3mkq_A 312 VGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK 390 (814)
T ss_dssp SSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred CCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccccc
Confidence 11233467899999999999998 899999998654332
Q ss_pred c-ccccceeecCCCccEEEcCC
Q 048801 666 K-DAKYDQFFLGDYRPLIRDSL 686 (1715)
Q Consensus 666 k-~~~~~~~fs~D~r~L~~d~~ 686 (1715)
. .......|+||++.|+....
T Consensus 391 ~~~~i~~~~~spdg~~la~~~~ 412 (814)
T 3mkq_A 391 AFGKCQDFVWGPDSNSYALIDE 412 (814)
T ss_dssp EEEECSEEEECTTSSCEEEECT
T ss_pred CCCceEEEEEeCCCCeEEEEeC
Confidence 2 33456789999998887544
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-37 Score=368.45 Aligned_cols=292 Identities=25% Similarity=0.379 Sum_probs=257.7
Q ss_pred eeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 234 k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
+...+|.||.+.|+|++|+|++++||||+.||+|+|||..+++....+..|...|.+++|+|+|.+||+|+.|+.|++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC------CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 314 LPDG------LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 314 l~tg------~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
+... .....+.+|...|.+++|+|++. .|++++.|++|++||+.+++.+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~t~s~D~~v~lwd~~~~~~~~~~------------------- 192 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM---QILTASGDGTCALWDVESGQLLQSF------------------- 192 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS---EEEEEETTSEEEEEETTTCCEEEEE-------------------
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCC---EEEEEeCCCcEEEEeCCCCeEEEEE-------------------
Confidence 8654 34677888999999999999987 8999999999999999988765443
Q ss_pred CCCCCCCCCCcceeEEEEcc--CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc
Q 048801 388 GPSSSNGLQSHQILCCAYNA--NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSp--dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~ 465 (1715)
..|...|.+++|+| +|.+|++|+.||.|++||+.++ ..+..+.+|...|++++|+|++
T Consensus 193 ------~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~---------~~~~~~~~h~~~v~~v~~~p~~----- 252 (354)
T 2pbi_B 193 ------HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG---------QCVQAFETHESDVNSVRYYPSG----- 252 (354)
T ss_dssp ------ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTS-----
T ss_pred ------cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC---------cEEEEecCCCCCeEEEEEeCCC-----
Confidence 23566799999987 5789999999999999999875 3467788999999999999986
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
..|++|+.||+|++||+++....... ....+.
T Consensus 253 ---------------------~~l~s~s~D~~v~lwd~~~~~~~~~~---------------------------~~~~~~ 284 (354)
T 2pbi_B 253 ---------------------DAFASGSDDATCRLYDLRADREVAIY---------------------------SKESII 284 (354)
T ss_dssp ---------------------SEEEEEETTSCEEEEETTTTEEEEEE---------------------------CCTTCC
T ss_pred ---------------------CEEEEEeCCCeEEEEECCCCcEEEEE---------------------------cCCCcc
Confidence 79999999999999999864321110 001123
Q ss_pred CCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
..+.+++|+|+|.+|++|+.|+.|+|||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.||+|+||+
T Consensus 285 ~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEC
T ss_pred cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCCEEEEEcCCCCEEecC
Confidence 4688999999999999999999999999999999999999999999999999 778999999999999996
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-37 Score=372.67 Aligned_cols=323 Identities=15% Similarity=0.177 Sum_probs=242.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC------CCeeEEEECCCCCc--
Q 048801 248 CAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN------DFVIRVWRLPDGLP-- 319 (1715)
Q Consensus 248 ~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~------DGtIrVWDl~tg~~-- 319 (1715)
.+.+.+++.++.+ +.+.....|++... ...+|...|++++|||||++||+|+. |+.|++|+..++.+
T Consensus 10 g~d~g~~~~~~~~-~g~~~~~~w~~p~~----~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~ 84 (357)
T 4g56_B 10 GVDLGTENLYFQS-NGSSKGSAWGRPVT----APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE 84 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred CCCCCccceEEec-CCCccccccCCCCC----CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence 3445555545444 45678899987543 33579999999999999999999997 78899999887653
Q ss_pred --eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCC
Q 048801 320 --ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQS 397 (1715)
Q Consensus 320 --l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~ 397 (1715)
.....+|...|++++|+|++ .+++++.||+|+|||+.+++...... .....|.
T Consensus 85 ~~~~~~~~~~~~V~~~~~s~d~----~~l~~s~dg~v~lWd~~~~~~~~~~~---------------------~~~~~h~ 139 (357)
T 4g56_B 85 SLCTAGVQTEAGVTDVAWVSEK----GILVASDSGAVELWEILEKESLLVNK---------------------FAKYEHD 139 (357)
T ss_dssp GGCSEEEECSSCEEEEEEETTT----EEEEEETTSCEEEC--------CCCC---------------------EEECCCS
T ss_pred eEecccCCCCCCEEEEEEcCCC----CEEEEECCCEEEEeeccccceeEEEe---------------------eccCCCC
Confidence 33445689999999999987 57788899999999998776432211 1123467
Q ss_pred cceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccc
Q 048801 398 HQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 398 ~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
..|++++|+|+|++|++|+.||.|+|||+.++ ..+..+.+|...|++++|++++
T Consensus 140 ~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~---------~~~~~~~~h~~~v~~v~~s~~~----------------- 193 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK---------AVLKSYNAHSSEVNCVAACPGK----------------- 193 (357)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECTTC-----------------
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEECCCC---------cEEEEEcCCCCCEEEEEEccCC-----------------
Confidence 78999999999999999999999999999874 4577889999999999999876
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC-
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD- 556 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD- 556 (1715)
...+++++.||+|++||+++++.... .....+...+.+++|+|+
T Consensus 194 --------~~~~~s~~~dg~v~~wd~~~~~~~~~---------------------------~~~~~~~~~v~~v~~sp~~ 238 (357)
T 4g56_B 194 --------DTIFLSCGEDGRILLWDTRKPKPATR---------------------------IDFCASDTIPTSVTWHPEK 238 (357)
T ss_dssp --------SSCEEEEETTSCEEECCTTSSSCBCB---------------------------CCCTTCCSCEEEEEECTTS
T ss_pred --------CceeeeeccCCceEEEECCCCceeee---------------------------eeeccccccccchhhhhcc
Confidence 35899999999999999987542211 122345667999999997
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEE
Q 048801 557 NRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDG 636 (1715)
Q Consensus 557 G~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~sv 636 (1715)
+.+|++|+.|+.|+|||+.+++++..+.+|...|++++|+|+++++|++|+.||+|+|||+.+++++..+ +|...|.++
T Consensus 239 ~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~v 317 (357)
T 4g56_B 239 DDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGV 317 (357)
T ss_dssp TTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEE
T ss_pred cceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEE
Confidence 4688999999999999999999999999999999999999977789999999999999999999888766 589999999
Q ss_pred EEcC-CCCEEEEEeCCCeEEEEECCCC
Q 048801 637 KFSP-DGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 637 afSP-DG~~LAsgs~DG~I~IWdl~tG 662 (1715)
+|+| |+.+||+++.||.|++|++.+.
T Consensus 318 afsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 318 AWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 9998 8999999999999999999654
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=384.66 Aligned_cols=338 Identities=19% Similarity=0.294 Sum_probs=279.6
Q ss_pred CCCeEEEEEcCCCC-EEEEE----------eCCCcEEEEeCCCCc---EEEEecCCCCCeEEEEECCCCCEEEEEeCCCe
Q 048801 243 RDAVYCAIFDRSGR-FVITG----------SDDRLVKIWSMETAF---CLASCRGHEGDITDLAVSSNNTLVASASNDFV 308 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~-~LaTG----------S~DGtIrIWDl~tgk---~l~tL~gHs~~VtsLafSpDg~lLASGS~DGt 308 (1715)
...|.+++|+|+|+ +|++| +.||.|+||++.++. .+..+ .|...|++++|+|++.+|++|+.||.
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCe
Confidence 34688999999997 99999 899999999999875 33444 58999999999999999999999999
Q ss_pred eEEEECCC----CCceEEEeCCCCCeEEEEecCC-CCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCC
Q 048801 309 IRVWRLPD----GLPISVLRGHTGAVTAIAFSPR-PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383 (1715)
Q Consensus 309 IrVWDl~t----g~~l~~L~gH~~~VtsLafSPd-g~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~ 383 (1715)
|+||++.+ ...+..+.+|...|++++|+|+ +. +|++++.||.|++||+.++........
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~~~~~------------- 154 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN---VLASGGNNGEIFIWDMNKCTESPSNYT------------- 154 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT---BEEEECSSSCEEBCBTTTTSSCTTTCC-------------
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCCCC---EEEEEcCCCeEEEEECCCCcccccccc-------------
Confidence 99999987 3578889999999999999998 55 799999999999999987652110000
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccC-CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCC------CCCeeEEEE
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNAN-GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGH------ENDVNYVQF 456 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpd-G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH------~~~V~sLaf 456 (1715)
.........|...|.+++|+|+ +.+|++++.||.|++||+.+++ .+..+..| ...|.+++|
T Consensus 155 ---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~ 222 (416)
T 2pm9_A 155 ---PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK---------EVIHLSYTSPNSGIKQQLSVVEW 222 (416)
T ss_dssp ---CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE---------EEEEECCCCCSSCCCCCEEEEEE
T ss_pred ---ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC---------cceEEeccccccccCCceEEEEE
Confidence 0001112346778999999999 7899999999999999998743 34444444 789999999
Q ss_pred ccCcccccccccccccccccccccCCcccCceEEEEcCCC---eEEEEecCCCccCcccccccccccccCCCCCCCCCCC
Q 048801 457 SGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG---SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPP 533 (1715)
Q Consensus 457 spdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG---sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 533 (1715)
+|++ ...|++++.|+ .|++||++++.
T Consensus 223 ~~~~-------------------------~~~l~~~~~d~~~~~i~~~d~~~~~-------------------------- 251 (416)
T 2pm9_A 223 HPKN-------------------------STRVATATGSDNDPSILIWDLRNAN-------------------------- 251 (416)
T ss_dssp CSSC-------------------------TTEEEEEECCSSSCCCCEEETTSTT--------------------------
T ss_pred CCCC-------------------------CCEEEEEECCCCCceEEEEeCCCCC--------------------------
Confidence 9985 36899999999 99999998632
Q ss_pred CCCCccccc-CCCCCeeEEEeCC-CCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCc
Q 048801 534 RGGPRQRLL-PTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGR 611 (1715)
Q Consensus 534 ~g~~~~~l~-~h~~~VtslafSP-DG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGt 611 (1715)
.+...+. +|...|.+++|+| ++.+|++++.|+.|++||+.+++++..+.+|...|++++|+|+++.+|++++.||.
T Consensus 252 --~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 252 --TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp --SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred --CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence 1223344 6888999999999 99999999999999999999999999999999999999999955589999999999
Q ss_pred EEEEECCCCceEEEEEc-----------------------------------ccceEEEEEEcCCCCEEEEEeCCCeEEE
Q 048801 612 TIVWDIWEGTPIRIYEI-----------------------------------GRFKLVDGKFSPDGTSIVLSDDVGQIYL 656 (1715)
Q Consensus 612 I~VWDl~tgk~l~tl~~-----------------------------------h~~~V~svafSPDG~~LAsgs~DG~I~I 656 (1715)
|+||++.++........ +..++.+++|+|||++||+++.||.|+|
T Consensus 330 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~ 409 (416)
T 2pm9_A 330 IEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSI 409 (416)
T ss_dssp EEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCC
T ss_pred EEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEE
Confidence 99999987653322111 3456778999999999999999999999
Q ss_pred EECCCC
Q 048801 657 LNTGQG 662 (1715)
Q Consensus 657 Wdl~tG 662 (1715)
|++.+.
T Consensus 410 w~~~~~ 415 (416)
T 2pm9_A 410 TNPKIS 415 (416)
T ss_dssp BCCCCC
T ss_pred EEeccC
Confidence 999764
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=362.33 Aligned_cols=294 Identities=17% Similarity=0.222 Sum_probs=259.6
Q ss_pred CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcE
Q 048801 275 AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtV 354 (1715)
.+...++.+|.+.|++++|+|++++|++|+.||+|+|||+.++..+..+..|...|.+++|+|++. +|++++.|+.|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~s~~~d~~v 121 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN---YVACGGLDNIC 121 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSS---EEEEEETTCEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCC---EEEEEeCCCeE
Confidence 356788999999999999999999999999999999999999999999999999999999999988 89999999999
Q ss_pred EEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCC
Q 048801 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDS 434 (1715)
Q Consensus 355 rIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~ 434 (1715)
++|++.++...... ......|...|.+++|++++. |++++.|+.|++||+.++
T Consensus 122 ~iw~~~~~~~~~~~---------------------~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~----- 174 (340)
T 1got_B 122 SIYNLKTREGNVRV---------------------SRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG----- 174 (340)
T ss_dssp EEEETTTCSBSCEE---------------------EEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT-----
T ss_pred EEEECccCCCccee---------------------EEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC-----
Confidence 99999765421111 011234567899999998875 888999999999999874
Q ss_pred CCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccc
Q 048801 435 EQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGR 514 (1715)
Q Consensus 435 ~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~ 514 (1715)
..+..+.+|...|.+++|+|++ .+|++|+.||.|++||++++.
T Consensus 175 ----~~~~~~~~h~~~v~~~~~~~~~--------------------------~~l~sg~~d~~v~~wd~~~~~------- 217 (340)
T 1got_B 175 ----QQTTTFTGHTGDVMSLSLAPDT--------------------------RLFVSGACDASAKLWDVREGM------- 217 (340)
T ss_dssp ----EEEEEECCCSSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEETTTCS-------
T ss_pred ----cEEEEEcCCCCceEEEEECCCC--------------------------CEEEEEeCCCcEEEEECCCCe-------
Confidence 3567788999999999999986 799999999999999998633
Q ss_pred ccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec--CCCCeEE
Q 048801 515 WTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG--HSASSYV 592 (1715)
Q Consensus 515 ~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g--H~~~V~s 592 (1715)
....+.+|...|++++|+|++.+|++|+.|++|+|||+.+++.+..+.. +...|.+
T Consensus 218 ----------------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 218 ----------------------CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp ----------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred ----------------------eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence 2334567888999999999999999999999999999999988887753 3457999
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 593 LDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 593 LafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
++|+| ++.+|++|+.||.|+|||+.+++.+..+.+|...|.+++|+|||.+||+|+.||.|+|||
T Consensus 276 ~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 276 VSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECC-CCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999 788999999999999999999999999999999999999999999999999999999996
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-37 Score=372.95 Aligned_cols=314 Identities=16% Similarity=0.213 Sum_probs=268.2
Q ss_pred cEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEE
Q 048801 266 LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQL 345 (1715)
Q Consensus 266 tIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~L 345 (1715)
.+.+|+..+..+..+|.+|.+.|++++|+|++++||+|+.||+|+|||+.++..+..+.+|...|.+++|+|++. +|
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~---~l 123 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ---SV 123 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSS---EE
T ss_pred cccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCC---EE
Confidence 455677777888899999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred EEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEE
Q 048801 346 LSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVW 424 (1715)
Q Consensus 346 aSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVW 424 (1715)
++|+.|+.|++|++.+...... ..........|...|.+++|+|++ ..|++|+.|+.|++|
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~w 185 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDG------------------NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLW 185 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCC------------------SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEE
T ss_pred EEeeCCCcEEEEECCCCccccC------------------CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEE
Confidence 9999999999999875431100 001122345677889999999974 579999999999999
Q ss_pred eCCCCCccCCCCCceeeeee-----cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEE
Q 048801 425 SACKSSVEDSEQPIHELDVL-----SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAI 499 (1715)
Q Consensus 425 Dl~t~~~~~~~~~~~~l~~l-----~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIr 499 (1715)
|+.++.. +..+ .+|...|.+++|++.. ...|++|+.||+|+
T Consensus 186 d~~~~~~---------~~~~~~~~~~~h~~~v~~~~~~~~~-------------------------~~~l~sgs~D~~v~ 231 (380)
T 3iz6_a 186 DVTTGQR---------ISIFGSEFPSGHTADVLSLSINSLN-------------------------ANMFISGSCDTTVR 231 (380)
T ss_dssp CTTTCCE---------EEEECCCSSSSCCSCEEEEEECSSS-------------------------CCEEEEEETTSCEE
T ss_pred EcCCCcE---------EEEeecccCCCCccCeEEEEeecCC-------------------------CCEEEEEECCCeEE
Confidence 9987542 2222 6799999999998732 37999999999999
Q ss_pred EEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce
Q 048801 500 IWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL 579 (1715)
Q Consensus 500 IWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~ 579 (1715)
+||++.. ......+.+|...|++++|+|+|.+|++|+.|++|+|||+.++..
T Consensus 232 ~wd~~~~----------------------------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~ 283 (380)
T 3iz6_a 232 LWDLRIT----------------------------SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283 (380)
T ss_dssp EEETTTT----------------------------CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE
T ss_pred EEECCCC----------------------------CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE
Confidence 9998731 123445678899999999999999999999999999999999999
Q ss_pred EEEEecCCC-------CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEE----EcccceEEEEEEcCCCCEEEEE
Q 048801 580 VHSLTGHSA-------SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY----EIGRFKLVDGKFSPDGTSIVLS 648 (1715)
Q Consensus 580 l~tL~gH~~-------~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl----~~h~~~V~svafSPDG~~LAsg 648 (1715)
+..+..+.. .|++++|+| ++.+|++|+.||.|+|||+.+++.+..+ .+|...|.+++|+|||.+|++|
T Consensus 284 ~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 362 (380)
T 3iz6_a 284 LQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTG 362 (380)
T ss_dssp EEEECCCCSSSCCSSCSCSEEEECS-SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEE
T ss_pred EEEecccccccccccCceEEEEECC-CCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEe
Confidence 998876533 489999999 7889999999999999999999998887 5688899999999999999999
Q ss_pred eCCCeEEEEECCCCc
Q 048801 649 DDVGQIYLLNTGQGE 663 (1715)
Q Consensus 649 s~DG~I~IWdl~tGe 663 (1715)
+.||.|+||++..++
T Consensus 363 s~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 363 SWDKNLKIWAFSGHR 377 (380)
T ss_dssp CTTSCEEEEECCSSS
T ss_pred eCCCCEEEEecCCCc
Confidence 999999999997653
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=356.82 Aligned_cols=299 Identities=19% Similarity=0.251 Sum_probs=248.9
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCC-----CcEEEEecCCCCCeEEEEECCCCCEEEEEeC
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSG-RFVITGSDDRLVKIWSMET-----AFCLASCRGHEGDITDLAVSSNNTLVASASN 305 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG-~~LaTGS~DGtIrIWDl~t-----gk~l~tL~gHs~~VtsLafSpDg~lLASGS~ 305 (1715)
.+.+..+|.||.+.|++++|+|++ ++|+||+.|++|++|++.+ +..+..+.+|...|++++|+|++.+|++|+.
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 356778899999999999999965 8999999999999999864 3567889999999999999999999999999
Q ss_pred CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 306 DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 306 DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
|++|+|||+.+++.+..+.+|...|.+++|+|++. +|++++.|++|++||+....
T Consensus 86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~s~s~D~~i~vwd~~~~~---------------------- 140 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS---MIISGSRDKTIKVWTIKGQC---------------------- 140 (319)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC---EEEEEETTSCEEEEETTSCE----------------------
T ss_pred CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC---EEEEEeCCCeEEEEECCCCe----------------------
Confidence 99999999999999999999999999999999887 88999999999999864210
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~ 465 (1715)
+..+.+|...|.++.|.|....
T Consensus 141 -------------------------------------------------------~~~~~~h~~~v~~~~~~~~~~~--- 162 (319)
T 3frx_A 141 -------------------------------------------------------LATLLGHNDWVSQVRVVPNEKA--- 162 (319)
T ss_dssp -------------------------------------------------------EEEECCCSSCEEEEEECCC------
T ss_pred -------------------------------------------------------EEEEeccCCcEEEEEEccCCCC---
Confidence 1122345556666666664310
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
......|++++.|+.|++||+.+.+ ....+.+|.
T Consensus 163 -----------------~~~~~~l~s~~~d~~i~~wd~~~~~-----------------------------~~~~~~~h~ 196 (319)
T 3frx_A 163 -----------------DDDSVTIISAGNDKMVKAWNLNQFQ-----------------------------IEADFIGHN 196 (319)
T ss_dssp --------------------CCEEEEEETTSCEEEEETTTTE-----------------------------EEEEECCCC
T ss_pred -----------------CCCccEEEEEeCCCEEEEEECCcch-----------------------------hheeecCCC
Confidence 0012489999999999999997532 223456788
Q ss_pred CCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI 625 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t 625 (1715)
..|.+++|+|+|++|++|+.||.|+|||+.+++++..+..+ ..|.+++|+| ++.+|++++.+ .|++|++..+..+..
T Consensus 197 ~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp-~~~~la~~~~~-~i~v~~~~~~~~~~~ 273 (319)
T 3frx_A 197 SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP-NRYWLAAATAT-GIKVFSLDPQYLVDD 273 (319)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECS-SSSEEEEEETT-EEEEEEETTEEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcC-CCCEEEEEcCC-CcEEEEeCcCeeeec
Confidence 99999999999999999999999999999999999999865 6799999999 67888777654 599999988887777
Q ss_pred EEc--------ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 626 YEI--------GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 626 l~~--------h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
+.. +...+.+++|+|||++|++|+.||.|+||++.++
T Consensus 274 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp ECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred cCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 642 3456899999999999999999999999998664
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=348.38 Aligned_cols=296 Identities=23% Similarity=0.427 Sum_probs=260.6
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEE
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRV 311 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrV 311 (1715)
......+|.||.+.|++++|+|+|++|++|+.||.|+||++.+++....+.+|...|.+++|+|++++|++|+.|+.|+|
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 312 WRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 312 WDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
||+.+++.+..+.+|...|.+++|+|++. +|++++.||.|++||+.+++.+..+
T Consensus 92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~s~~~d~~i~iwd~~~~~~~~~~----------------------- 145 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSN---LIVSGSFDESVRIWDVKTGKCLKTL----------------------- 145 (312)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSS---EEEEEETTSCEEEEETTTCCEEEEE-----------------------
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCEEEEEe-----------------------
Confidence 99999999999999999999999999987 8999999999999999887654433
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~ 471 (1715)
..|...|.+++|+|++.+|++|+.||.|++||+.+++. +..+.
T Consensus 146 --~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---------~~~~~-------------------------- 188 (312)
T 4ery_A 146 --PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC---------LKTLI-------------------------- 188 (312)
T ss_dssp --CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------EEEEC--------------------------
T ss_pred --cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---------eeEEe--------------------------
Confidence 22456799999999999999999999999999975321 10000
Q ss_pred cccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEE
Q 048801 472 KEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMI 551 (1715)
Q Consensus 472 ~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsl 551 (1715)
..+...+.++
T Consensus 189 ----------------------------------------------------------------------~~~~~~~~~~ 198 (312)
T 4ery_A 189 ----------------------------------------------------------------------DDDNPPVSFV 198 (312)
T ss_dssp ----------------------------------------------------------------------CSSCCCEEEE
T ss_pred ----------------------------------------------------------------------ccCCCceEEE
Confidence 0112357788
Q ss_pred EeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEE--EEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcc
Q 048801 552 VWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYV--LDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG 629 (1715)
Q Consensus 552 afSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~s--LafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h 629 (1715)
+|+|++++|++++.|+.|++||+.+++++..+.+|...+.+ ..+++.++.+|++|+.||.|++||+.+++.+..+.+|
T Consensus 199 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h 278 (312)
T 4ery_A 199 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278 (312)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc
Confidence 99999999999999999999999999999999988765433 3455557889999999999999999999999999999
Q ss_pred cceEEEEEEcCCCCEEEEEe--CCCeEEEEECC
Q 048801 630 RFKLVDGKFSPDGTSIVLSD--DVGQIYLLNTG 660 (1715)
Q Consensus 630 ~~~V~svafSPDG~~LAsgs--~DG~I~IWdl~ 660 (1715)
...|.+++|+|++.+|++++ .||.|++|+..
T Consensus 279 ~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 279 TDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999999999986 69999999864
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=383.95 Aligned_cols=426 Identities=13% Similarity=0.096 Sum_probs=318.9
Q ss_pred CCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCC-EEEEEeCCCcEEE
Q 048801 191 QADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGR-FVITGSDDRLVKI 269 (1715)
Q Consensus 191 ~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~-~LaTGS~DGtIrI 269 (1715)
+...|..+.|.+.+..+......... ......+...+.+..+.+|...|++++|+|++. +|++|+.||.|++
T Consensus 115 ~~~~v~~~~~s~~~~~l~~~~~~~~~-------~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~v 187 (615)
T 1pgu_A 115 LAGPISDISWDFEGRRLCVVGEGRDN-------FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF 187 (615)
T ss_dssp CSSCEEEEEECTTSSEEEEEECCSSC-------SEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEE
T ss_pred ccccEEEEEEeCCCCEEEEeccCCCC-------ccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEE
Confidence 45668888888777544433221100 001112234567889999999999999999998 8999999999999
Q ss_pred EeCCCCcEEEEecCCCC---CeEEEEECCC-CCEEEEEeCCCeeEEEECCCCCceEEE-e---CCCCCeEEEEecCCCCc
Q 048801 270 WSMETAFCLASCRGHEG---DITDLAVSSN-NTLVASASNDFVIRVWRLPDGLPISVL-R---GHTGAVTAIAFSPRPSA 341 (1715)
Q Consensus 270 WDl~tgk~l~tL~gHs~---~VtsLafSpD-g~lLASGS~DGtIrVWDl~tg~~l~~L-~---gH~~~VtsLafSPdg~~ 341 (1715)
||+.+++.+..+.+|.. .|++++|+|+ +++|++++.||.|++||+.+++.+..+ . +|...|.+++|+ ++.
T Consensus 188 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~- 265 (615)
T 1pgu_A 188 YQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQ- 265 (615)
T ss_dssp EETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSS-
T ss_pred EeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCC-
Confidence 99999999999999999 9999999999 999999999999999999999999999 6 899999999999 776
Q ss_pred ceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeE
Q 048801 342 IYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFA 421 (1715)
Q Consensus 342 ~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~I 421 (1715)
+|++++.||.|++||+.+++.+..+.... ......+.++.|+ ++.++++|+.+|.|
T Consensus 266 --~l~~~~~d~~i~~wd~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~-~~~~l~~~~~~g~i 321 (615)
T 1pgu_A 266 --KFATVGADATIRVWDVTTSKCVQKWTLDK---------------------QQLGNQQVGVVAT-GNGRIISLSLDGTL 321 (615)
T ss_dssp --EEEEEETTSEEEEEETTTTEEEEEEECCT---------------------TCGGGCEEEEEEE-ETTEEEEEETTSCE
T ss_pred --EEEEEcCCCcEEEEECCCCcEEEEEcCCC---------------------CcccCceeEEEeC-CCCeEEEEECCCCE
Confidence 89999999999999999887665554321 1123457888886 88999999999999
Q ss_pred EEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc--ccccccccc------ccccccCCcccCceEEEEc
Q 048801 422 RVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS--AMSDAFKEE------NVPKFKNSWFCHDNIVTCS 493 (1715)
Q Consensus 422 rVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~--~~~~~~~~~------~~~~~~~s~~~~~~LaSgS 493 (1715)
++||+.++ ..+..+.+|...|.+++| |+ ++... +....+... ........+.....|++++
T Consensus 322 ~~~d~~~~---------~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 390 (615)
T 1pgu_A 322 NFYELGHD---------EVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSIS 390 (615)
T ss_dssp EEEETTEE---------EEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEE
T ss_pred EEEECCCC---------cEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEe
Confidence 99999763 456677888889999988 76 22211 111111100 0001111122356777788
Q ss_pred CCCeEEEEecCCCccCc--------------------cccccc-------ccccccCC-------CCCCCCCCC-C----
Q 048801 494 RDGSAIIWIPRSRRSHG--------------------KVGRWT-------RAYHLKVP-------PPPLPPQPP-R---- 534 (1715)
Q Consensus 494 ~DGsIrIWDl~t~~~~~--------------------~~~~~~-------~~~~l~~~-------~~~~~~~~~-~---- 534 (1715)
.||.|++|++.++.... .+..|. ..+..... ......... .
T Consensus 391 ~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~ 470 (615)
T 1pgu_A 391 WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQ 470 (615)
T ss_dssp TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEE
T ss_pred CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEE
Confidence 88888888776432100 000000 00000000 000000000 0
Q ss_pred -----CCCc--ccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec-CCCCeEEEEEccC--------
Q 048801 535 -----GGPR--QRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG-HSASSYVLDVHPF-------- 598 (1715)
Q Consensus 535 -----g~~~--~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g-H~~~V~sLafSP~-------- 598 (1715)
.... ..+..|...|++++|+|+|++|++|+.||.|+|||+.+++++..+.+ |...|++++|+|.
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~ 550 (615)
T 1pgu_A 471 VFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEE 550 (615)
T ss_dssp EEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------C
T ss_pred EEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccc
Confidence 0001 44567888999999999999999999999999999999999999988 9999999999993
Q ss_pred -CCcEEEEEeCCCcEEEEECCCC-ceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 599 -NPRIAMSAGYDGRTIVWDIWEG-TPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 599 -dg~lLaSgs~DGtI~VWDl~tg-k~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
++.+|++|+.||.|+|||+.++ +++..+.+|...|.+++|+|||+ |++++.||.|++|++..
T Consensus 551 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 551 IEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp CSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred cCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 5688999999999999999998 88899999999999999999999 99999999999999865
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=406.53 Aligned_cols=469 Identities=11% Similarity=0.061 Sum_probs=322.7
Q ss_pred CCCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 048801 190 MQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKI 269 (1715)
Q Consensus 190 ~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrI 269 (1715)
.|.+.|.+++|.+.+..++.+.....+. .|.....+.+.. ..|...|++|+|+| |++|++++.|++|+|
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~---------lw~~~~~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~l 83 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVH---------IYGQQQVEVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYV 83 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEE---------EECSTTCEEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEE
T ss_pred CCCCCcEEEEECCCCCEEEEEeCCCEEE---------EEeCCCcEEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEE
Confidence 4567799999998886665554433322 223333444444 45889999999999 889999999999999
Q ss_pred EeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCce-----------EEEeCCCCCeEEEEecCC
Q 048801 270 WSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI-----------SVLRGHTGAVTAIAFSPR 338 (1715)
Q Consensus 270 WDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l-----------~~L~gH~~~VtsLafSPd 338 (1715)
||+.+++++..+. |.+.|++++|+|++.+|++|+.||+|++||+.++... ..+.+|.+.|++++|+|+
T Consensus 84 Wd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 84 LSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp EETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred EECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 9999999999887 7789999999999999999999999999999988653 234679999999999997
Q ss_pred CCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC
Q 048801 339 PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD 418 (1715)
Q Consensus 339 g~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D 418 (1715)
+.. .|++|+.||+| +||+.+++.+..+....+.....+. ........|...|.+++|+|+|.+||+|+.|
T Consensus 163 ~~~--~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~-------~~~~~~~~h~~~V~~v~fspdg~~lasgs~D 232 (902)
T 2oaj_A 163 DIG--TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGD-------FSEKTNEKRTPKVIQSLYHPNSLHIITIHED 232 (902)
T ss_dssp EEE--EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCST-------TCCCTTSCBCCCEEEEEECTTSSEEEEEETT
T ss_pred CCC--EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcc-------cccccccccCCCeEEEEEcCCCCEEEEEECC
Confidence 532 78999999999 9999988766554322111000000 0002233456789999999999999999999
Q ss_pred CeEEEEeCCCCCccCCCCCceeeeeec-------------CCCCCeeEEEEcc----Cc---cccccc-------ccccc
Q 048801 419 TFARVWSACKSSVEDSEQPIHELDVLS-------------GHENDVNYVQFSG----CA---VASRSA-------MSDAF 471 (1715)
Q Consensus 419 G~IrVWDl~t~~~~~~~~~~~~l~~l~-------------gH~~~V~sLafsp----dg---~as~~~-------~~~~~ 471 (1715)
|.|++||+.+++.... ..+.... .|...|.+++|++ ++ ++.... ....+
T Consensus 233 g~i~lWd~~~g~~~~~----r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~ 308 (902)
T 2oaj_A 233 NSLVFWDANSGHMIMA----RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMI 308 (902)
T ss_dssp CCEEEEETTTCCEEEE----ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEE
T ss_pred CeEEEEECCCCcEEEE----EeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEE
Confidence 9999999987643110 0000001 2455799999964 21 111100 00000
Q ss_pred ccc--------------------c-ccccc----------------CCc----ccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 472 KEE--------------------N-VPKFK----------------NSW----FCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 472 ~~~--------------------~-~~~~~----------------~s~----~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
... . ...+. ..+ .+...+++++.||.|++|++.++....
T Consensus 309 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~ 388 (902)
T 2oaj_A 309 DLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTD 388 (902)
T ss_dssp EEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEEC
T ss_pred ecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccc
Confidence 000 0 00000 001 123378888899999999997653221
Q ss_pred ccccccccccccCCCCCCC---CC-----------CCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC
Q 048801 511 KVGRWTRAYHLKVPPPPLP---PQ-----------PPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD 576 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~---~~-----------~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s 576 (1715)
........ +........ .. .........+.+|...+..++|+|++++|++|+.|++|++||+.+
T Consensus 389 ~~~~~~~~--l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~ 466 (902)
T 2oaj_A 389 KASLFPQN--LSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASH 466 (902)
T ss_dssp CGGGSCGG--GTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSC
T ss_pred ccccCCCc--ccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCC
Confidence 10000000 000000000 00 000111234567777888899999999999999999999999988
Q ss_pred CceE----EEE--e-----cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-------------------------
Q 048801 577 GSLV----HSL--T-----GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG------------------------- 620 (1715)
Q Consensus 577 g~~l----~tL--~-----gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg------------------------- 620 (1715)
+... ..+ . +|...|++|+|+| ++++||+|+.||+|+||++.++
T Consensus 467 g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (902)
T 2oaj_A 467 GDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNN 545 (902)
T ss_dssp CTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGG
T ss_pred ccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccC
Confidence 7531 111 1 8999999999999 7889999999999999999766
Q ss_pred --------------------ceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc------------cc
Q 048801 621 --------------------TPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK------------DA 668 (1715)
Q Consensus 621 --------------------k~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k------------~~ 668 (1715)
+++..+.+|.+.|++++||||| +||+|+.||.|+|||+.++..+. ..
T Consensus 546 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~ 624 (902)
T 2oaj_A 546 TNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSAC 624 (902)
T ss_dssp SSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCC
T ss_pred CccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccc
Confidence 2477888899999999999999 99999999999999998765431 11
Q ss_pred ccceeec-----CCC---ccEEEcCCCC
Q 048801 669 KYDQFFL-----GDY---RPLIRDSLGN 688 (1715)
Q Consensus 669 ~~~~~fs-----~D~---r~L~~d~~g~ 688 (1715)
.....|+ +|+ +.|+......
T Consensus 625 V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~ 652 (902)
T 2oaj_A 625 VTCIEFVIMEYGDDGYSSILMVCGTDMG 652 (902)
T ss_dssp EEEEEEEEEECTTSSSEEEEEEEEETTS
T ss_pred eEEEEEEEEecCCCCCcceEEEEEecCC
Confidence 4556888 885 6666554433
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-36 Score=357.70 Aligned_cols=296 Identities=23% Similarity=0.336 Sum_probs=248.1
Q ss_pred cceeEEEEcCCCCCeEEEEE-----cC-CCCEEEEEeCCCcEEEEeCCC-------CcEEEEecCCCCCeEEEEECCCCC
Q 048801 232 KMQNIKKLRGHRDAVYCAIF-----DR-SGRFVITGSDDRLVKIWSMET-------AFCLASCRGHEGDITDLAVSSNNT 298 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~Vaf-----Sp-DG~~LaTGS~DGtIrIWDl~t-------gk~l~tL~gHs~~VtsLafSpDg~ 298 (1715)
..++...|.||.+.|++++| ++ ++.+||||+.|++|+|||+.+ +.....+.+|...|++++|+|++.
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 45677889999999999999 76 999999999999999999864 356778999999999999999999
Q ss_pred EEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCcc
Q 048801 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAIT 378 (1715)
Q Consensus 299 lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~ 378 (1715)
+|++|+.|++|+|||+.+++.+..+.+|...|++++|+|++. +|++++.|++|++||+..... ...
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~---~l~s~~~d~~i~~wd~~~~~~-~~~---------- 155 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR---QILSAGAEREIKLWNILGECK-FSS---------- 155 (343)
T ss_dssp EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTT---EEEEEETTSCEEEEESSSCEE-EEC----------
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCC---EEEEEcCCCEEEEEeccCCce-eee----------
Confidence 999999999999999999999999999999999999999998 899999999999999863221 110
Q ss_pred CccCCCCCCCCCCCCCCCCcceeEEEEccCC----------CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCC
Q 048801 379 GKSNVPSNNGPSSSNGLQSHQILCCAYNANG----------TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE 448 (1715)
Q Consensus 379 g~~~~~~~~~~~~~~~~h~~~VtslafSpdG----------~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~ 448 (1715)
.....|...|.+++|+|++ .+|++|+.||.|++||.. ......+.+|.
T Consensus 156 ------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~----------~~~~~~~~~h~ 213 (343)
T 2xzm_R 156 ------------AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN----------FQIRYTFKAHE 213 (343)
T ss_dssp ------------CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT----------TEEEEEEECCS
T ss_pred ------------ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC----------CceeEEEcCcc
Confidence 0112356779999999987 789999999999999953 23456788999
Q ss_pred CCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCC
Q 048801 449 NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPL 528 (1715)
Q Consensus 449 ~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~ 528 (1715)
..|.+++|+|++ .+|++|+.||.|++||+.....
T Consensus 214 ~~v~~~~~s~~g--------------------------~~l~sgs~dg~v~iwd~~~~~~-------------------- 247 (343)
T 2xzm_R 214 SNVNHLSISPNG--------------------------KYIATGGKDKKLLIWDILNLTY-------------------- 247 (343)
T ss_dssp SCEEEEEECTTS--------------------------SEEEEEETTCEEEEEESSCCSS--------------------
T ss_pred ccceEEEECCCC--------------------------CEEEEEcCCCeEEEEECCCCcc--------------------
Confidence 999999999987 7999999999999999853210
Q ss_pred CCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEE--EEe-----------cCCCCeEEEEE
Q 048801 529 PPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVH--SLT-----------GHSASSYVLDV 595 (1715)
Q Consensus 529 ~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~--tL~-----------gH~~~V~sLaf 595 (1715)
. .....+...|.+++|+|++.+|+++ .|+.|+||++.+++... .+. +|...|.+++|
T Consensus 248 --------~-~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 317 (343)
T 2xzm_R 248 --------P-QREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAW 317 (343)
T ss_dssp --------C-SEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEE
T ss_pred --------c-ceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEE
Confidence 0 0111234569999999999888755 57889999998876543 443 68889999999
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCC
Q 048801 596 HPFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 596 SP~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
+| ++.+|++|+.||+|++|++.++
T Consensus 318 sp-~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 318 NA-LGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CS-SSCCEEEEETTSEEEEEEEEEE
T ss_pred CC-CCCeEEEecCCceEEEEEEEcc
Confidence 99 7788899999999999998654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-36 Score=351.94 Aligned_cols=323 Identities=14% Similarity=0.143 Sum_probs=275.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC---
Q 048801 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL--- 318 (1715)
Q Consensus 242 H~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~--- 318 (1715)
|.+.|.+++|+|||++++++..++.+.+|............+|...|++++|+|++++|++++ ||.|+||++.++.
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 456899999999999999998888888877665555555568999999999999999999999 9999999998765
Q ss_pred ceEEEe--CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC
Q 048801 319 PISVLR--GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396 (1715)
Q Consensus 319 ~l~~L~--gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h 396 (1715)
.+..+. +|...|++++|+|++. +|++++.||.|++||+.+++...... ...|
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~-----------------------~~~~ 140 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGC---TLIVGGEASTLSIWDLAAPTPRIKAE-----------------------LTSS 140 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSS---EEEEEESSSEEEEEECCCC--EEEEE-----------------------EECS
T ss_pred eeecccccCCCCcEEEEEEcCCCC---EEEEEcCCCcEEEEECCCCCcceeee-----------------------cccC
Confidence 334444 7999999999999987 89999999999999998765322111 1224
Q ss_pred CcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccc
Q 048801 397 SHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476 (1715)
Q Consensus 397 ~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~ 476 (1715)
...|.+++|+|++.+|++++.||.|++||+.++ ..+..+..|...|.+++|+|++
T Consensus 141 ~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~---------------- 195 (337)
T 1gxr_A 141 APACYALAISPDSKVCFSCCSDGNIAVWDLHNQ---------TLVRQFQGHTDGASCIDISNDG---------------- 195 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECTTS----------------
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---------ceeeeeecccCceEEEEECCCC----------------
Confidence 566999999999999999999999999999864 3466778899999999999986
Q ss_pred ccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC
Q 048801 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD 556 (1715)
Q Consensus 477 ~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD 556 (1715)
..|++++.||.|++||+.+++... ...+...+.+++|+|+
T Consensus 196 ----------~~l~~~~~dg~i~~~d~~~~~~~~------------------------------~~~~~~~v~~~~~s~~ 235 (337)
T 1gxr_A 196 ----------TKLWTGGLDNTVRSWDLREGRQLQ------------------------------QHDFTSQIFSLGYCPT 235 (337)
T ss_dssp ----------SEEEEEETTSEEEEEETTTTEEEE------------------------------EEECSSCEEEEEECTT
T ss_pred ----------CEEEEEecCCcEEEEECCCCceEe------------------------------eecCCCceEEEEECCC
Confidence 799999999999999998643211 1234567999999999
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEE
Q 048801 557 NRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDG 636 (1715)
Q Consensus 557 G~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~sv 636 (1715)
+.+|++++.++.|++||+.+++. ..+..|...|.+++|+| ++.+|++++.||.|++||+.+++.+.... +...|.++
T Consensus 236 ~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-~~~~v~~~ 312 (337)
T 1gxr_A 236 GEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSC 312 (337)
T ss_dssp SSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEec-CCCcEEEE
Confidence 99999999999999999988875 46788999999999999 77889999999999999999999886654 78889999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEC
Q 048801 637 KFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 637 afSPDG~~LAsgs~DG~I~IWdl 659 (1715)
+|+|+|++|++++.||.|++|++
T Consensus 313 ~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 313 DISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EECTTSCEEEEEETTSCEEEEEE
T ss_pred EECCCCCEEEEecCCCeEEEEEE
Confidence 99999999999999999999996
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=357.58 Aligned_cols=298 Identities=16% Similarity=0.227 Sum_probs=260.5
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEE
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVr 355 (1715)
+...++.+|.+.|++++|+|++.+||+|+.||+|+|||..++.....+..|...|.+++|+|++. +|++++.|+.++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~---~lasg~~d~~i~ 131 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC---AIACGGLDNKCS 131 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSS---EEEEESTTSEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCC---EEEEeeCCCCEE
Confidence 56678999999999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE 435 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~ 435 (1715)
+|++......... ........|...|.+++|+|++..|++|+.|+.|++||+.++
T Consensus 132 v~~~~~~~~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~------ 186 (354)
T 2pbi_B 132 VYPLTFDKNENMA-------------------AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG------ 186 (354)
T ss_dssp EEECCCCTTCCSG-------------------GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC------
T ss_pred EEEEecccccccc-------------------ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC------
Confidence 9998654211000 001122346788999999999999999999999999999875
Q ss_pred CCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccc
Q 048801 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW 515 (1715)
Q Consensus 436 ~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~ 515 (1715)
..+..+.+|...|.+++|+|... +..|++|+.||+|++||+++++
T Consensus 187 ---~~~~~~~~h~~~v~~~~~~~~~~------------------------g~~l~sgs~Dg~v~~wd~~~~~-------- 231 (354)
T 2pbi_B 187 ---QLLQSFHGHGADVLCLDLAPSET------------------------GNTFVSGGCDKKAMVWDMRSGQ-------- 231 (354)
T ss_dssp ---CEEEEEECCSSCEEEEEECCCSS------------------------CCEEEEEETTSCEEEEETTTCC--------
T ss_pred ---eEEEEEcCCCCCeEEEEEEeCCC------------------------CCEEEEEeCCCeEEEEECCCCc--------
Confidence 34678889999999999987530 2689999999999999998643
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecC--CCCeEEE
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH--SASSYVL 593 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH--~~~V~sL 593 (1715)
....+..|...|++++|+|++.+|++|+.|++|+|||+.+++.+..+..+ ...+.++
T Consensus 232 ---------------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 290 (354)
T 2pbi_B 232 ---------------------CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSV 290 (354)
T ss_dssp ---------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred ---------------------EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEE
Confidence 23345678889999999999999999999999999999999888777644 4578999
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 594 DVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 594 afSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
+|+| ++.+|++|+.||+|+|||+.+++.+..+.+|...|.+++|+|||++||+|+.||.|+||+
T Consensus 291 ~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 291 DFSL-SGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEeC-CCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999 788999999999999999999999999999999999999999999999999999999995
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=363.58 Aligned_cols=305 Identities=21% Similarity=0.382 Sum_probs=250.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCC------------------CeEEEEECCCCCEEE
Q 048801 240 RGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEG------------------DITDLAVSSNNTLVA 301 (1715)
Q Consensus 240 ~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~------------------~VtsLafSpDg~lLA 301 (1715)
.+|.+.|+|++|+|||++||+|+ ++.|+||++.++..+..+.+|.. .|++++|+|+|++||
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 37999999999999999999986 68999999999999988876643 399999999999999
Q ss_pred EEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCcc
Q 048801 302 SASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKS 381 (1715)
Q Consensus 302 SGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~ 381 (1715)
+|+.|++|+|||+.+++.+..+.+|...|++++|+|++. +|++++.|++|++||+.+++....+.
T Consensus 140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~---~l~s~s~d~~v~iwd~~~~~~~~~~~------------ 204 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD---KLVSGSGDRTVRIWDLRTGQCSLTLS------------ 204 (393)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---EEEEEETTSEEEEEETTTTEEEEEEE------------
T ss_pred EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC---EEEEecCCCcEEEEECCCCeeEEEEE------------
Confidence 999999999999999999999999999999999999987 89999999999999999877544332
Q ss_pred CCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCc
Q 048801 382 NVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 382 ~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg 460 (1715)
+...+.+++|+| +|.+|++|+.||.|++||+.++....... .......+|...|.+++|+|++
T Consensus 205 --------------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~--~~~~~~~~h~~~v~~v~~~~~g 268 (393)
T 1erj_A 205 --------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD--SENESGTGHKDSVYSVVFTRDG 268 (393)
T ss_dssp --------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------CCCSSCEEEEEECTTS
T ss_pred --------------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeec--ccccCCCCCCCCEEEEEECCCC
Confidence 134589999999 89999999999999999998754311000 0011226799999999999986
Q ss_pred ccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
..|++|+.||+|++||+.+....... .....+.....
T Consensus 269 --------------------------~~l~s~s~d~~v~~wd~~~~~~~~~~-----------------~~~~~~~~~~~ 305 (393)
T 1erj_A 269 --------------------------QSVVSGSLDRSVKLWNLQNANNKSDS-----------------KTPNSGTCEVT 305 (393)
T ss_dssp --------------------------SEEEEEETTSEEEEEEC--------------------------------CEEEE
T ss_pred --------------------------CEEEEEeCCCEEEEEECCCCCCcccc-----------------cCCCCCcceEE
Confidence 79999999999999999864321100 00111233455
Q ss_pred ccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccC-----CCcEEEEEeCCCcEEEE
Q 048801 541 LLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPF-----NPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 541 l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~-----dg~lLaSgs~DGtI~VW 615 (1715)
+.+|...|.+++|+|++.+|++|+.|+.|++||+.+++++..+.+|...|.+++|++. ++.+|++|+.||+|+||
T Consensus 306 ~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW 385 (393)
T 1erj_A 306 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385 (393)
T ss_dssp EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEE
T ss_pred EecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEEC
Confidence 6788999999999999999999999999999999999999999999999999999863 46799999999999999
Q ss_pred ECCC
Q 048801 616 DIWE 619 (1715)
Q Consensus 616 Dl~t 619 (1715)
++..
T Consensus 386 ~~~~ 389 (393)
T 1erj_A 386 KYKK 389 (393)
T ss_dssp EEEE
T ss_pred cccc
Confidence 9754
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=361.71 Aligned_cols=305 Identities=16% Similarity=0.161 Sum_probs=240.4
Q ss_pred EEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC-----------CCceEEEeCCCCCeEEEEe
Q 048801 267 VKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD-----------GLPISVLRGHTGAVTAIAF 335 (1715)
Q Consensus 267 IrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t-----------g~~l~~L~gH~~~VtsLaf 335 (1715)
.+.|++..... ..|...|.+++|+|||++|++++ |+++++||... .........|...|++++|
T Consensus 16 ~r~w~~~~~~~----~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 90 (344)
T 4gqb_B 16 AREWNLPPNAP----ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW 90 (344)
T ss_dssp -------CCSC----SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEE
T ss_pred ccccCCCCCCc----ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEE
Confidence 45677654432 35778899999999999999888 67888886311 1112222346778999999
Q ss_pred cCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEe
Q 048801 336 SPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG 415 (1715)
Q Consensus 336 SPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatG 415 (1715)
+|++ .|++|+.||+|+|||+.+++....... ....|...|++++|+|+|++|++|
T Consensus 91 s~d~----~l~~~s~dg~v~lWd~~~~~~~~~~~~---------------------~~~~H~~~V~~v~~spdg~~l~sg 145 (344)
T 4gqb_B 91 VGER----GILVASDSGAVELWELDENETLIVSKF---------------------CKYEHDDIVSTVSVLSSGTQAVSG 145 (344)
T ss_dssp ETTT----EEEEEETTSEEEEEEECTTSSCEEEEE---------------------EEECCSSCEEEEEECTTSSEEEEE
T ss_pred eCCC----eEEEEECCCEEEEEeccCCCceeEeec---------------------cccCCCCCEEEEEECCCCCEEEEE
Confidence 9985 689999999999999998875543321 112467789999999999999999
Q ss_pred cCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC
Q 048801 416 SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD 495 (1715)
Q Consensus 416 s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D 495 (1715)
+.||.|+|||+.++ ..+..+.+|...|.+++|++++ ...|++++.|
T Consensus 146 s~d~~i~iwd~~~~---------~~~~~~~~h~~~V~~~~~~~~~-------------------------~~~l~s~s~D 191 (344)
T 4gqb_B 146 SKDICIKVWDLAQQ---------VVLSSYRAHAAQVTCVAASPHK-------------------------DSVFLSCSED 191 (344)
T ss_dssp ETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECSSC-------------------------TTEEEEEETT
T ss_pred eCCCeEEEEECCCC---------cEEEEEcCcCCceEEEEecCCC-------------------------CCceeeeccc
Confidence 99999999999874 4578889999999999999976 3578999999
Q ss_pred CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC-CCEEEEEecCCeEEEEEC
Q 048801 496 GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD-NRFVLAAIMDCRICVWNA 574 (1715)
Q Consensus 496 GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD-G~~LaTgs~DGtI~IWDl 574 (1715)
|+|++||+++++....+ ....+...+.+++|+|+ +.+|++|+.||+|+|||+
T Consensus 192 ~~v~iwd~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 192 NRILLWDTRCPKPASQI---------------------------GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp SCEEEEETTSSSCEEEC---------------------------C----CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred cccccccccccceeeee---------------------------ecceeeccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence 99999999875422211 11234456899999985 568899999999999999
Q ss_pred CCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCC-EEEEEeCCCe
Q 048801 575 VDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGT-SIVLSDDVGQ 653 (1715)
Q Consensus 575 ~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~-~LAsgs~DG~ 653 (1715)
.+++++..+.+|...|++++|+|++..+|++|+.||+|+|||+.+++++ .+.+|...|.+++|+|+|. +|++++.||.
T Consensus 245 ~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~ 323 (344)
T 4gqb_B 245 KSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQ 323 (344)
T ss_dssp CC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred CCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCe
Confidence 9999999999999999999999966689999999999999999988765 4678999999999999986 5678999999
Q ss_pred EEEEECCCCc
Q 048801 654 IYLLNTGQGE 663 (1715)
Q Consensus 654 I~IWdl~tGe 663 (1715)
|++|++.+..
T Consensus 324 v~~w~v~~~~ 333 (344)
T 4gqb_B 324 VVHHVVPTEP 333 (344)
T ss_dssp EEEEECCC--
T ss_pred EEEEECCCCC
Confidence 9999997653
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=351.84 Aligned_cols=308 Identities=21% Similarity=0.331 Sum_probs=240.2
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--cEEEEe-cC-CCCCeEEEEECCCCCEEEEEeCCC
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA--FCLASC-RG-HEGDITDLAVSSNNTLVASASNDF 307 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg--k~l~tL-~g-Hs~~VtsLafSpDg~lLASGS~DG 307 (1715)
.++++++|.+|.+.|++++|+++ +||+|+.|++|+||++.++ ..+..+ .+ |...|++++|+|++.+||+|+.|+
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 45678899999999999999987 9999999999999999875 456666 45 999999999999999999999999
Q ss_pred eeEEEECCC-------CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCC-CcceecCCCCCCCccC
Q 048801 308 VIRVWRLPD-------GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQ-YSPRIYLPKPPDAITG 379 (1715)
Q Consensus 308 tIrVWDl~t-------g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~-~l~~i~~~~~~~~i~g 379 (1715)
+|+||++.. ..++..+.+|...|++++|+|++. +|++++.|++|++||+.... ....+
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~---~las~s~D~~v~iwd~~~~~~~~~~~----------- 146 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY---YLATCSRDKSVWIWETDESGEEYECI----------- 146 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC---EEEEEETTSCEEEEECCTTCCCCEEE-----------
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC---EEEEEeCCCEEEEEeccCCCCCeEEE-----------
Confidence 999999853 346778899999999999999987 89999999999999995322 11110
Q ss_pred ccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccC
Q 048801 380 KSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGC 459 (1715)
Q Consensus 380 ~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspd 459 (1715)
.....|...|.+++|+|++.+|++|+.|+.|++|+..++. ..++..+.+|...|.+++|+|+
T Consensus 147 -----------~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~ 208 (330)
T 2hes_X 147 -----------SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD-------WECVAVLNGHEGTVWSSDFDKT 208 (330)
T ss_dssp -----------EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-------EEEEEEECCCSSCEEEEEECCS
T ss_pred -----------EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC-------eeEEEEccCCCCcEEEEEecCC
Confidence 1123467789999999999999999999999999986531 2457788999999999999997
Q ss_pred cccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcc
Q 048801 460 AVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQ 539 (1715)
Q Consensus 460 g~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~ 539 (1715)
.. ...|++++.|++|++||+.++..... ..| ....
T Consensus 209 ~~------------------------~~~l~s~s~D~~v~iw~~~~~~~~~~-~~~--------------------~~~~ 243 (330)
T 2hes_X 209 EG------------------------VFRLCSGSDDSTVRVWKYMGDDEDDQ-QEW--------------------VCEA 243 (330)
T ss_dssp SS------------------------SCEEEEEETTSCEEEEEEEEECTTSC-EEE--------------------EEEE
T ss_pred CC------------------------eeEEEEEeCCCeEEEEEecCCCcccc-cee--------------------EEee
Confidence 31 15799999999999999875321100 000 0111
Q ss_pred ccc-CCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc--eEEE-EecCCC-CeEEEEEccC-CCcEEEEEeCCCcEE
Q 048801 540 RLL-PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS--LVHS-LTGHSA-SSYVLDVHPF-NPRIAMSAGYDGRTI 613 (1715)
Q Consensus 540 ~l~-~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~--~l~t-L~gH~~-~V~sLafSP~-dg~lLaSgs~DGtI~ 613 (1715)
.+. .|...|.+++|++++ +|++++.||.|+||+..+++ .+.. +.+|.. .|.+++|+|. ++.+|++|+.||+|+
T Consensus 244 ~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~ 322 (330)
T 2hes_X 244 ILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVN 322 (330)
T ss_dssp ECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEE
T ss_pred ecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEE
Confidence 222 277889999999665 89999999999999998874 3333 367887 8999999995 578899999999999
Q ss_pred EEECCC
Q 048801 614 VWDIWE 619 (1715)
Q Consensus 614 VWDl~t 619 (1715)
||++.+
T Consensus 323 ~W~~~~ 328 (330)
T 2hes_X 323 FWSLEK 328 (330)
T ss_dssp EEEC--
T ss_pred EEEecc
Confidence 999854
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=358.38 Aligned_cols=287 Identities=16% Similarity=0.197 Sum_probs=234.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-----------CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCee
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET-----------AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVI 309 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~t-----------gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtI 309 (1715)
.|...|.+++|+|||++|++++ |+++++||... .........|...|++++|+|++ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 4677799999999999999888 67788886321 11111223367789999999986 67899999999
Q ss_pred EEEECCCCCceEEE----eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 310 RVWRLPDGLPISVL----RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 310 rVWDl~tg~~l~~L----~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
+|||+.+++.+..+ .+|.+.|++|+|+|++. +|++|+.||+|++||+.+++.+..+
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~---~l~sgs~d~~i~iwd~~~~~~~~~~----------------- 165 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT---QAVSGSKDICIKVWDLAQQVVLSSY----------------- 165 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS---EEEEEETTSCEEEEETTTTEEEEEE-----------------
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCC---EEEEEeCCCeEEEEECCCCcEEEEE-----------------
Confidence 99999999876543 48999999999999998 8999999999999999988765443
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeee--ecCCCCCeeEEEEccCccc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDV--LSGHENDVNYVQFSGCAVA 462 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~--l~gH~~~V~sLafspdg~a 462 (1715)
..|...|.+++|++++. +|++|+.|+.|+|||+.+++. +.. ...|...+.+++|+|.+
T Consensus 166 --------~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~p~~-- 226 (344)
T 4gqb_B 166 --------RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP---------ASQIGCSAPGYLPTSLAWHPQQ-- 226 (344)
T ss_dssp --------CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC---------EEECC----CCCEEEEEECSSC--
T ss_pred --------cCcCCceEEEEecCCCCCceeeeccccccccccccccce---------eeeeecceeeccceeeeecCCC--
Confidence 23677899999999884 789999999999999987542 222 24556679999999865
Q ss_pred ccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccccc
Q 048801 463 SRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLL 542 (1715)
Q Consensus 463 s~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~ 542 (1715)
..+|++|+.||+|++||+++++ .+..+.
T Consensus 227 -----------------------~~~l~sg~~dg~v~~wd~~~~~-----------------------------~~~~~~ 254 (344)
T 4gqb_B 227 -----------------------SEVFVFGDENGTVSLVDTKSTS-----------------------------CVLSSA 254 (344)
T ss_dssp -----------------------TTEEEEEETTSEEEEEESCC-------------------------------CCEEEE
T ss_pred -----------------------CcceEEeccCCcEEEEECCCCc-----------------------------EEEEEc
Confidence 3689999999999999998643 345567
Q ss_pred CCCCCeeEEEeCCCC-CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 543 PTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 543 ~h~~~VtslafSPDG-~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
+|...|++++|+|+| ++|++|+.|++|+|||+.+++++ .+.+|.+.|++|+|+|++..+|++|+.||+|++|++.+..
T Consensus 255 ~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 255 VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 889999999999998 57999999999999999988765 5789999999999999777899999999999999997653
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-36 Score=361.31 Aligned_cols=291 Identities=14% Similarity=0.197 Sum_probs=234.8
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEeCCCCcEE----EEecCCCCCeEEEEECCCCCEEEEEeCCCe
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSD------DRLVKIWSMETAFCL----ASCRGHEGDITDLAVSSNNTLVASASNDFV 308 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~------DGtIrIWDl~tgk~l----~tL~gHs~~VtsLafSpDg~lLASGS~DGt 308 (1715)
..+|...|++|+|+|||++||+|+. |+.|++|+..++... ....+|...|++++|+|++.+ ++++.||+
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCE
Confidence 4579999999999999999999997 788999998776543 344568999999999999865 56778999
Q ss_pred eEEEECCCCCce----EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 309 IRVWRLPDGLPI----SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 309 IrVWDl~tg~~l----~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
|+|||+.+++.+ ....+|...|++|+|+|++. +|++++.||+|++||+.+++.+..+
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~---~l~sgs~dg~v~iwd~~~~~~~~~~---------------- 177 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT---QAVSGGKDFSVKVWDLSQKAVLKSY---------------- 177 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSSSS---EEEEEETTSCEEEEETTTTEEEEEE----------------
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC---EEEEEeCCCeEEEEECCCCcEEEEE----------------
Confidence 999999887654 33458999999999999998 8999999999999999987755443
Q ss_pred CCCCCCCCCCCCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccc
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVAS 463 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as 463 (1715)
..|...|.+++|++++. +|++++.||.|+|||+.+++.. ....+..|...|.+++|+|++
T Consensus 178 ---------~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~-------~~~~~~~~~~~v~~v~~sp~~--- 238 (357)
T 4g56_B 178 ---------NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA-------TRIDFCASDTIPTSVTWHPEK--- 238 (357)
T ss_dssp ---------CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB-------CBCCCTTCCSCEEEEEECTTS---
T ss_pred ---------cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee-------eeeeeccccccccchhhhhcc---
Confidence 23567799999999875 7899999999999999875421 122345677789999999975
Q ss_pred cccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccC
Q 048801 464 RSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLP 543 (1715)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~ 543 (1715)
..+|++|+.|+.|++||+++++ ....+..
T Consensus 239 ----------------------~~~la~g~~d~~i~~wd~~~~~-----------------------------~~~~~~~ 267 (357)
T 4g56_B 239 ----------------------DDTFACGDETGNVSLVNIKNPD-----------------------------SAQTSAV 267 (357)
T ss_dssp ----------------------TTEEEEEESSSCEEEEESSCGG-----------------------------GCEEECC
T ss_pred ----------------------cceEEEeecccceeEEECCCCc-----------------------------EeEEEec
Confidence 3689999999999999998643 2334566
Q ss_pred CCCCeeEEEeCCCC-CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC
Q 048801 544 TPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 544 h~~~VtslafSPDG-~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
|...|++++|+|++ ++|++|+.|++|+|||+.+++++..+ +|.+.|++|+|+|.++.+|+||+.||+|++|++.+.
T Consensus 268 ~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 268 HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 78899999999987 57999999999999999999887655 899999999999978899999999999999999654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-35 Score=359.72 Aligned_cols=322 Identities=25% Similarity=0.430 Sum_probs=281.0
Q ss_pred ceeEEEEcCCCCCe-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEE
Q 048801 233 MQNIKKLRGHRDAV-YCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRV 311 (1715)
Q Consensus 233 ~k~l~~L~GH~~~V-t~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrV 311 (1715)
.+....|.||.+.| +|+. ++|++|++|+.||.|+|||+.+++.+..+.+|.+.|++++|+ +.+|++|+.||+|++
T Consensus 108 ~~~~~~l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v 183 (445)
T 2ovr_B 108 LKSPKVLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKV 183 (445)
T ss_dssp CCCCEEEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred cceeEEecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEE
Confidence 34567799999975 5544 468999999999999999999999999999999999999997 669999999999999
Q ss_pred EECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 312 WRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 312 WDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
||+.+++.+..+.+|...|.+++|++. .|++++.||+|++||+.+++.+..+.
T Consensus 184 wd~~~~~~~~~~~~h~~~v~~~~~~~~-----~l~s~s~dg~i~~wd~~~~~~~~~~~---------------------- 236 (445)
T 2ovr_B 184 WNAETGECIHTLYGHTSTVRCMHLHEK-----RVVSGSRDATLRVWDIETGQCLHVLM---------------------- 236 (445)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEETT-----EEEEEETTSEEEEEESSSCCEEEEEE----------------------
T ss_pred EECCcCcEEEEECCCCCcEEEEEecCC-----EEEEEeCCCEEEEEECCCCcEEEEEc----------------------
Confidence 999999999999999999999999643 79999999999999999877554432
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~ 471 (1715)
.|...|.+++| ++.+|++|+.||.|++||+.++ ..+..+.+|...|.++.|. +
T Consensus 237 ---~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~--~----------- 289 (445)
T 2ovr_B 237 ---GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE---------TCLHTLQGHTNRVYSLQFD--G----------- 289 (445)
T ss_dssp ---CCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT---------EEEEEECCCSSCEEEEEEC--S-----------
T ss_pred ---CCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC---------cEeEEecCCCCceEEEEEC--C-----------
Confidence 24667999999 7889999999999999999764 4567788999999999993 2
Q ss_pred cccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEE
Q 048801 472 KEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMI 551 (1715)
Q Consensus 472 ~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsl 551 (1715)
..+++++.||.|++||+.+++ ....+..|...+.++
T Consensus 290 ---------------~~l~~~~~d~~i~i~d~~~~~-----------------------------~~~~~~~~~~~v~~~ 325 (445)
T 2ovr_B 290 ---------------IHVVSGSLDTSIRVWDVETGN-----------------------------CIHTLTGHQSLTSGM 325 (445)
T ss_dssp ---------------SEEEEEETTSCEEEEETTTCC-----------------------------EEEEECCCCSCEEEE
T ss_pred ---------------CEEEEEeCCCeEEEEECCCCC-----------------------------EEEEEcCCcccEEEE
Confidence 689999999999999998643 223345567778877
Q ss_pred EeCCCCCEEEEEecCCeEEEEECCCCceEEEEec---CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEE--
Q 048801 552 VWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG---HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY-- 626 (1715)
Q Consensus 552 afSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g---H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl-- 626 (1715)
.+ ++.+|++|+.||.|++||+.+++.+..+.+ |...|++++|+ +.+|++|+.||.|+|||+.+++.+..+
T Consensus 326 ~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 400 (445)
T 2ovr_B 326 EL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVT 400 (445)
T ss_dssp EE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEE
T ss_pred EE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC---CCEEEEEeCCCeEEEEECCCCceeeeeec
Confidence 77 577999999999999999999999999986 88999999995 478999999999999999999999988
Q ss_pred ---EcccceEEEEEEcCCCCEEEEEeCCCe----EEEEECCC
Q 048801 627 ---EIGRFKLVDGKFSPDGTSIVLSDDVGQ----IYLLNTGQ 661 (1715)
Q Consensus 627 ---~~h~~~V~svafSPDG~~LAsgs~DG~----I~IWdl~t 661 (1715)
..+.+.|.+++|+|+|.+||+|+.||. |.|||+..
T Consensus 401 ~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 401 LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred cccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 356778999999999999999999997 99999864
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=355.65 Aligned_cols=305 Identities=19% Similarity=0.226 Sum_probs=249.3
Q ss_pred CcEEEEecCCCC-CeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE---EEeCCCCCeEEEEecCCCCcceEEEEecC
Q 048801 275 AFCLASCRGHEG-DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS---VLRGHTGAVTAIAFSPRPSAIYQLLSSSD 350 (1715)
Q Consensus 275 gk~l~tL~gHs~-~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~---~L~gH~~~VtsLafSPdg~~~~~LaSgS~ 350 (1715)
..++.++.+|.. .|++++|+|+|++||+|+.|++|+|||+.++.... ...+|...|++++|+|++. +|++++.
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~---~l~s~s~ 81 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN---YLASASF 81 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS---EEEEEET
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC---EEEEEEC
Confidence 457788999988 99999999999999999999999999998875432 2368999999999999988 8999999
Q ss_pred CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCC
Q 048801 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSS 430 (1715)
Q Consensus 351 DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~ 430 (1715)
|++|++|++..+...... ....|...|.+++|+|+|++|++|+.|+.|++||+....
T Consensus 82 D~~v~iw~~~~~~~~~~~-----------------------~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~ 138 (345)
T 3fm0_A 82 DATTCIWKKNQDDFECVT-----------------------TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED 138 (345)
T ss_dssp TSCEEEEEECCC-EEEEE-----------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS
T ss_pred CCcEEEEEccCCCeEEEE-----------------------EccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC
Confidence 999999998765421111 123467789999999999999999999999999997642
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
....+..+.+|...|.+++|+|++ .+|++++.|++|++|++.++..
T Consensus 139 ------~~~~~~~~~~h~~~v~~~~~~p~~--------------------------~~l~s~s~d~~i~~w~~~~~~~-- 184 (345)
T 3fm0_A 139 ------EYECVSVLNSHTQDVKHVVWHPSQ--------------------------ELLASASYDDTVKLYREEEDDW-- 184 (345)
T ss_dssp ------CEEEEEEECCCCSCEEEEEECSSS--------------------------SCEEEEETTSCEEEEEEETTEE--
T ss_pred ------CeEEEEEecCcCCCeEEEEECCCC--------------------------CEEEEEeCCCcEEEEEecCCCE--
Confidence 234567788999999999999986 7999999999999999875320
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC-------------
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG------------- 577 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg------------- 577 (1715)
.....+.+|...|.+++|+|+|++|++|+.|++|+||+...+
T Consensus 185 -------------------------~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~ 239 (345)
T 3fm0_A 185 -------------------------VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP 239 (345)
T ss_dssp -------------------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---C
T ss_pred -------------------------EEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCC
Confidence 012345678889999999999999999999999999996321
Q ss_pred --ceEEEEec-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc----eE-----EEEEcccceEEEEEEcCCC-CE
Q 048801 578 --SLVHSLTG-HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT----PI-----RIYEIGRFKLVDGKFSPDG-TS 644 (1715)
Q Consensus 578 --~~l~tL~g-H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk----~l-----~tl~~h~~~V~svafSPDG-~~ 644 (1715)
.++..+.+ |...|++++|+| ++..|++++.|+.|+||+...+. +. ..+.+|...|.+++|+|++ .+
T Consensus 240 ~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~ 318 (345)
T 3fm0_A 240 SWKCICTLSGFHSRTIYDIAWCQ-LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGL 318 (345)
T ss_dssp EEEEEEEECSSCSSCEEEEEECT-TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTE
T ss_pred ccceeEEecCCCCCcEEEEEEec-CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceE
Confidence 34555665 889999999999 66788899999999999987542 11 1223678899999999998 49
Q ss_pred EEEEeCCCeEEEEECCCCccc
Q 048801 645 IVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 645 LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
||+|+.||.|+||++.+++..
T Consensus 319 laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 319 LASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp EEEEETTSCEEEEEECC----
T ss_pred EEEcCCCCcEEEEEecCCCCc
Confidence 999999999999999887644
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=339.08 Aligned_cols=299 Identities=22% Similarity=0.346 Sum_probs=252.3
Q ss_pred ccccceeEEEEcCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCC-----cEEEEecCCCCCeEEEEECCCCCEEEE
Q 048801 229 MVQKMQNIKKLRGHRDAVYCAIFDRS-GRFVITGSDDRLVKIWSMETA-----FCLASCRGHEGDITDLAVSSNNTLVAS 302 (1715)
Q Consensus 229 ~~~~~k~l~~L~GH~~~Vt~VafSpD-G~~LaTGS~DGtIrIWDl~tg-----k~l~tL~gHs~~VtsLafSpDg~lLAS 302 (1715)
...++.+..+|+||.+.|++|+|+|+ +++|||||.||+|+|||+.+. .+...+.+|...|++++|+|++++|++
T Consensus 24 ~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s 103 (340)
T 4aow_A 24 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS 103 (340)
T ss_dssp --CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred cCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence 34566778899999999999999997 689999999999999998754 457789999999999999999999999
Q ss_pred EeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccC
Q 048801 303 ASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSN 382 (1715)
Q Consensus 303 GS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~ 382 (1715)
|+.|+.|++|+...+........+...+..+.+++++. +|++++.|+.+++||+........
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~s~s~d~~~~~~d~~~~~~~~~--------------- 165 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR---QIVSGSRDKTIKLWNTLGVCKYTV--------------- 165 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS---CEEEEETTSCEEEECTTSCEEEEE---------------
T ss_pred EcccccceEEeecccceeeeecCCCCceeEEEEeecCc---cceeecCCCeEEEEEeCCCceEEE---------------
Confidence 99999999999999998888888999999999999987 799999999999999865432111
Q ss_pred CCCCCCCCCCCCCCCcceeEEEEccCC--CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCc
Q 048801 383 VPSNNGPSSSNGLQSHQILCCAYNANG--TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 383 ~~~~~~~~~~~~~h~~~VtslafSpdG--~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg 460 (1715)
....|...+.+++|++++ .++++++.|+.|++||+.++ ..+..+.+|...|++++|+|++
T Consensus 166 ---------~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---------~~~~~~~~h~~~v~~~~~s~~~ 227 (340)
T 4aow_A 166 ---------QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC---------KLKTNHIGHTGYLNTVTVSPDG 227 (340)
T ss_dssp ---------CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECTTS
T ss_pred ---------EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC---------ceeeEecCCCCcEEEEEECCCC
Confidence 123356779999998865 57889999999999999864 4567788999999999999986
Q ss_pred ccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
.+|++|+.||.|++||+.+.....
T Consensus 228 --------------------------~~l~s~s~Dg~i~iwd~~~~~~~~------------------------------ 251 (340)
T 4aow_A 228 --------------------------SLCASGGKDGQAMLWDLNEGKHLY------------------------------ 251 (340)
T ss_dssp --------------------------SEEEEEETTCEEEEEETTTTEEEE------------------------------
T ss_pred --------------------------CEEEEEeCCCeEEEEEeccCceee------------------------------
Confidence 799999999999999998643211
Q ss_pred ccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe---------cCCCCeEEEEEccCCCcEEEEEeCCCc
Q 048801 541 LLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT---------GHSASSYVLDVHPFNPRIAMSAGYDGR 611 (1715)
Q Consensus 541 l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~---------gH~~~V~sLafSP~dg~lLaSgs~DGt 611 (1715)
...+...|.+++|+|++.++ +++.|+.|+|||+.++..+..+. +|...|++++|+| ++.+|++|+.||.
T Consensus 252 ~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~ 329 (340)
T 4aow_A 252 TLDGGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNL 329 (340)
T ss_dssp EEECSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-TSSEEEEEETTSC
T ss_pred eecCCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-CCCEEEEEeCCCE
Confidence 11234579999999988655 56679999999999888776653 6889999999999 7789999999999
Q ss_pred EEEEECCCCc
Q 048801 612 TIVWDIWEGT 621 (1715)
Q Consensus 612 I~VWDl~tgk 621 (1715)
|+|||+.+|+
T Consensus 330 v~iW~~~tGt 339 (340)
T 4aow_A 330 VRVWQVTIGT 339 (340)
T ss_dssp EEEEEEEC--
T ss_pred EEEEeCCCcC
Confidence 9999999885
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=340.79 Aligned_cols=300 Identities=22% Similarity=0.314 Sum_probs=252.6
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCC-CCEEEEEeCCCeeEEEECCCCC-----ceEEEeCCCCCeEEEEecCCCCcceEE
Q 048801 272 METAFCLASCRGHEGDITDLAVSSN-NTLVASASNDFVIRVWRLPDGL-----PISVLRGHTGAVTAIAFSPRPSAIYQL 345 (1715)
Q Consensus 272 l~tgk~l~tL~gHs~~VtsLafSpD-g~lLASGS~DGtIrVWDl~tg~-----~l~~L~gH~~~VtsLafSPdg~~~~~L 345 (1715)
.++..+..+|+||.+.|++|+|+|+ +++||||+.||+|+|||+.++. +...+.+|...|++++|+|++. +|
T Consensus 25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~---~l 101 (340)
T 4aow_A 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ---FA 101 (340)
T ss_dssp -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS---EE
T ss_pred CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC---EE
Confidence 3455677789999999999999997 6899999999999999997653 4677899999999999999998 89
Q ss_pred EEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEe
Q 048801 346 LSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWS 425 (1715)
Q Consensus 346 aSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWD 425 (1715)
++++.|+.|++|+........... .+...+.++.+++++.+|++|+.|+.+++||
T Consensus 102 ~s~~~d~~i~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d 156 (340)
T 4aow_A 102 LSGSWDGTLRLWDLTTGTTTRRFV-------------------------GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156 (340)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEE-------------------------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEcccccceEEeecccceeeeec-------------------------CCCCceeEEEEeecCccceeecCCCeEEEEE
Confidence 999999999999988765433321 2244578899999999999999999999999
Q ss_pred CCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC
Q 048801 426 ACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 505 (1715)
Q Consensus 426 l~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t 505 (1715)
+... ......+.+|...|.+++|++++. ...+++++.|+.|++||+.+
T Consensus 157 ~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~------------------------~~~~~s~~~d~~i~i~d~~~ 204 (340)
T 4aow_A 157 TLGV--------CKYTVQDESHSEWVSCVRFSPNSS------------------------NPIIVSCGWDKLVKVWNLAN 204 (340)
T ss_dssp TTSC--------EEEEECSSSCSSCEEEEEECSCSS------------------------SCEEEEEETTSCEEEEETTT
T ss_pred eCCC--------ceEEEEeccccCcccceEEccCCC------------------------CcEEEEEcCCCEEEEEECCC
Confidence 8653 233455678999999999998651 25789999999999999986
Q ss_pred CccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 048801 506 RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG 585 (1715)
Q Consensus 506 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g 585 (1715)
++ ....+.+|...|++++|+|++++|++|+.|+.|+|||+.+++.+..+..
T Consensus 205 ~~-----------------------------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 255 (340)
T 4aow_A 205 CK-----------------------------LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255 (340)
T ss_dssp TE-----------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred Cc-----------------------------eeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC
Confidence 43 2334567888999999999999999999999999999999999998886
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE---------cccceEEEEEEcCCCCEEEEEeCCCeEEE
Q 048801 586 HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE---------IGRFKLVDGKFSPDGTSIVLSDDVGQIYL 656 (1715)
Q Consensus 586 H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~---------~h~~~V~svafSPDG~~LAsgs~DG~I~I 656 (1715)
+ ..|.++.|+| ++.++ +++.|+.|+|||+.++..+..+. .|...|.+++|+|||++||+|+.||.|+|
T Consensus 256 ~-~~v~~~~~~~-~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~i 332 (340)
T 4aow_A 256 G-DIINALCFSP-NRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 332 (340)
T ss_dssp S-SCEEEEEECS-SSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred C-ceEEeeecCC-CCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 5 5799999999 55555 56779999999999888776654 46778999999999999999999999999
Q ss_pred EECCCCc
Q 048801 657 LNTGQGE 663 (1715)
Q Consensus 657 Wdl~tGe 663 (1715)
|++.+|.
T Consensus 333 W~~~tGt 339 (340)
T 4aow_A 333 WQVTIGT 339 (340)
T ss_dssp EEEEC--
T ss_pred EeCCCcC
Confidence 9999885
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-35 Score=392.77 Aligned_cols=438 Identities=9% Similarity=0.020 Sum_probs=297.3
Q ss_pred CCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 048801 191 QADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIW 270 (1715)
Q Consensus 191 ~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIW 270 (1715)
+...|..+.|.+ |..+. ++..+.....|.+.+.+++..+. |.+.|++++|+|++++|++|+.||.|++|
T Consensus 57 ~~~~V~~l~fsp-g~~L~---------S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lw 125 (902)
T 2oaj_A 57 DRSAIKEMRFVK-GIYLV---------VINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVY 125 (902)
T ss_dssp SCCCEEEEEEET-TTEEE---------EEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEE
T ss_pred CCCCEEEEEEcC-CCEEE---------EEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEE
Confidence 356788888877 43222 22333334445566677788886 77899999999999999999999999999
Q ss_pred eCCCCcEE-----------EEecCCCCCeEEEEECCC-CCEEEEEeCCCeeEEEECCCCCceEEEeCC------------
Q 048801 271 SMETAFCL-----------ASCRGHEGDITDLAVSSN-NTLVASASNDFVIRVWRLPDGLPISVLRGH------------ 326 (1715)
Q Consensus 271 Dl~tgk~l-----------~tL~gHs~~VtsLafSpD-g~lLASGS~DGtIrVWDl~tg~~l~~L~gH------------ 326 (1715)
|+.++.+. ..+.+|.+.|++++|+|+ +.+|++|+.||.| |||+.+++++..+.+|
T Consensus 126 d~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~ 204 (902)
T 2oaj_A 126 DIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSE 204 (902)
T ss_dssp ETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCC
T ss_pred ECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccc
Confidence 99988764 234679999999999996 5789999999999 9999999988888766
Q ss_pred ------CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCC-----CC-----------CCCccCcc---
Q 048801 327 ------TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLP-----KP-----------PDAITGKS--- 381 (1715)
Q Consensus 327 ------~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~-----~~-----------~~~i~g~~--- 381 (1715)
...|++++|+|++. +|++++.||+|++||+.+++.+....+. .+ ...+....
T Consensus 205 ~~~~~h~~~V~~v~fspdg~---~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~ 281 (902)
T 2oaj_A 205 KTNEKRTPKVIQSLYHPNSL---HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMC 281 (902)
T ss_dssp CTTSCBCCCEEEEEECTTSS---EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEE
T ss_pred ccccccCCCeEEEEEcCCCC---EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEe
Confidence 57799999999987 8999999999999999988765321110 00 00000000
Q ss_pred ---------CCCC--CCC----CCC------------------------------CCCCCCcceeEEEEcc---------
Q 048801 382 ---------NVPS--NNG----PSS------------------------------SNGLQSHQILCCAYNA--------- 407 (1715)
Q Consensus 382 ---------~~~~--~~~----~~~------------------------------~~~~h~~~VtslafSp--------- 407 (1715)
.... ... ... ....+...|.++++.+
T Consensus 282 ~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~ 361 (902)
T 2oaj_A 282 ENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGC 361 (902)
T ss_dssp CSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHT
T ss_pred cCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCC
Confidence 0000 000 000 0001234455565544
Q ss_pred -CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccc-----cccccccc-ccccc
Q 048801 408 -NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAM-----SDAFKEEN-VPKFK 480 (1715)
Q Consensus 408 -dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~-----~~~~~~~~-~~~~~ 480 (1715)
++..+++++.||.|++|++.++..... .......+..|...|++++|++.....-... ........ .....
T Consensus 362 ~d~~~l~~~s~dg~l~~~~~~~g~~~~~--~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~ 439 (902)
T 2oaj_A 362 HNPGLILLILGNGEIETMLYPSGIFTDK--ASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKR 439 (902)
T ss_dssp BSCSEEEEEETTSCEEEEETTTCCEECC--GGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCC
T ss_pred CCceeEEEEcCCCcEEEEECCCCCcccc--cccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCC
Confidence 233566677777788887754421100 0001123456667888888865321000000 00000000 00000
Q ss_pred --CCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC
Q 048801 481 --NSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558 (1715)
Q Consensus 481 --~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~ 558 (1715)
....++..|++|+.||+|++||+.++..... ..+.... ......+|...|.+++|+|||+
T Consensus 440 sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~-----~~~~~~l-------------~~~~~~~h~~~V~svafspdg~ 501 (902)
T 2oaj_A 440 QKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN-----ASFEVNL-------------SRTLNKAKELAVDKISFAAETL 501 (902)
T ss_dssp CCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT-----BCEEEEH-------------HHHTTCSSSCCEEEEEEETTTT
T ss_pred cccccccCcEEEEecCCCcEEEEECCCccccCC-----ceEEeec-------------hhhcCCCCCCceeEEEecCCCC
Confidence 0112467999999999999999987531100 0000000 0000126788999999999999
Q ss_pred EEEEEecCCeEEEEECCCC---------------------------------------------ceEEEEecCCCCeEEE
Q 048801 559 FVLAAIMDCRICVWNAVDG---------------------------------------------SLVHSLTGHSASSYVL 593 (1715)
Q Consensus 559 ~LaTgs~DGtI~IWDl~sg---------------------------------------------~~l~tL~gH~~~V~sL 593 (1715)
+||+|+.||+|+||++.++ +++..+.+|.+.|++|
T Consensus 502 ~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~sv 581 (902)
T 2oaj_A 502 ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAI 581 (902)
T ss_dssp EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEE
T ss_pred eEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEE
Confidence 9999999999999999766 2477888999999999
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceEEE-----EE-cccceEEEEEEc-----CCC---CEEEEEeCCCeEEEEEC
Q 048801 594 DVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI-----YE-IGRFKLVDGKFS-----PDG---TSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 594 afSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t-----l~-~h~~~V~svafS-----PDG---~~LAsgs~DG~I~IWdl 659 (1715)
+|+| ++ +||+|+.||+|+|||+.++..+.. +. +|...|++++|| ||| ++|++|+.||+|++|++
T Consensus 582 afSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 582 NNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred EecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 9999 66 999999999999999988777643 22 677789999999 886 89999999999999999
Q ss_pred ---CCCccc
Q 048801 660 ---GQGESQ 665 (1715)
Q Consensus 660 ---~tGe~~ 665 (1715)
.+|+..
T Consensus 660 ~p~~~g~~~ 668 (902)
T 2oaj_A 660 LPASGGKFD 668 (902)
T ss_dssp EECGGGCEE
T ss_pred ecCCCCcEE
Confidence 677644
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-34 Score=337.61 Aligned_cols=308 Identities=17% Similarity=0.246 Sum_probs=265.7
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
......|.+|.+.|++++|+|+|++|++|+.||.|+|||+.+++.+..+.+|...|++++|+|++++|++++.||.|+||
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCC-----CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 313 RLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD-----GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 313 Dl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D-----GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
|+.+++.+..+. |...|.+++|+|++. +|++++.+ |.|.+||+..+.....+.....
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~~~~---~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~-------------- 163 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSPCGN---YFLAILDNVMKNPGSINIYEIERDSATHELTKVSE-------------- 163 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECTTSS---EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS--------------
T ss_pred ECCCCcEEEEee-cCCCeEEEEEccCCC---EEEEecCCccCCCCEEEEEEecCCccceeeccccc--------------
Confidence 999999999888 889999999999988 88999888 9999999987765433322110
Q ss_pred CCCCCCCCCCc--ceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc
Q 048801 388 GPSSSNGLQSH--QILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 388 ~~~~~~~~h~~--~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~ 465 (1715)
........+.. .+.+++|+|++.+|++|+.||.|++||+.+. ...+..+..|...|.+++|+|++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~v~~~~~~~~~----- 230 (369)
T 3zwl_B 164 EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN--------YEYVDSIDLHEKSISDMQFSPDL----- 230 (369)
T ss_dssp SCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT--------TEEEEEEECCSSCEEEEEECTTS-----
T ss_pred ceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC--------cEeEEEEecCCCceeEEEECCCC-----
Confidence 01111112233 7999999999999999999999999999763 24567788899999999999986
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
..|++++.||.|++||+.++.... ...+.
T Consensus 231 ---------------------~~l~~~~~d~~i~v~d~~~~~~~~------------------------------~~~~~ 259 (369)
T 3zwl_B 231 ---------------------TYFITSSRDTNSFLVDVSTLQVLK------------------------------KYETD 259 (369)
T ss_dssp ---------------------SEEEEEETTSEEEEEETTTCCEEE------------------------------EEECS
T ss_pred ---------------------CEEEEecCCceEEEEECCCCceee------------------------------eecCC
Confidence 789999999999999998644221 11256
Q ss_pred CCeeEEEeCCCCCEEEEEecCC--------------eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCc
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDC--------------RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGR 611 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DG--------------tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGt 611 (1715)
..+.+++|+|++.+|++++.++ .|++||+.+++.+..+.+|...|++++|+| ++.+|++++.||.
T Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~ 338 (369)
T 3zwl_B 260 CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISP-QGTSYASGGEDGF 338 (369)
T ss_dssp SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSE
T ss_pred CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECC-CCCEEEEEcCCCe
Confidence 6799999999999999999988 899999999999999999999999999999 7789999999999
Q ss_pred EEEEECCCCceE
Q 048801 612 TIVWDIWEGTPI 623 (1715)
Q Consensus 612 I~VWDl~tgk~l 623 (1715)
|+||++..+...
T Consensus 339 v~iw~~~~~~~~ 350 (369)
T 3zwl_B 339 IRLHHFEKSYFD 350 (369)
T ss_dssp EEEEEECHHHHT
T ss_pred EEEEECccccch
Confidence 999999765543
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=355.84 Aligned_cols=346 Identities=13% Similarity=0.079 Sum_probs=273.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe
Q 048801 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~ 324 (1715)
.+++++|+|+|++|++|+.||.|++||+.++.....+..| ..+...+|++++++||+|+.||.|+|||+.++..+..+.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 4558899999999999999999999999988777666666 455556789999999999999999999999999888888
Q ss_pred CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEE
Q 048801 325 GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCA 404 (1715)
Q Consensus 325 gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsla 404 (1715)
+|...|++++|+|++. +|++++.||.|++||+.+++.+..+ ..|...|.+++
T Consensus 137 ~h~~~v~~~~~~~~~~---~l~s~s~d~~i~iwd~~~~~~~~~~-------------------------~~h~~~v~~~~ 188 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGE---ALISSSQDMQLKIWSVKDGSNPRTL-------------------------IGHRATVTDIA 188 (420)
T ss_dssp SSSSCEEEEEECTTSS---EEEEEETTSEEEEEETTTCCCCEEE-------------------------ECCSSCEEEEE
T ss_pred cccCccEEEEECCCCC---EEEEEeCCCeEEEEeCCCCcCceEE-------------------------cCCCCcEEEEE
Confidence 9999999999999987 8999999999999999887654433 23567799999
Q ss_pred EccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCc-
Q 048801 405 YNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW- 483 (1715)
Q Consensus 405 fSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~- 483 (1715)
|+|++.+|++|+.||.|++||+.+++. ...+.....|...|.+++|.+..... .. ...........|
T Consensus 189 ~~~~~~~l~s~~~d~~v~iwd~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~----~~--~~~~~~v~~~~~s 256 (420)
T 3vl1_A 189 IIDRGRNVLSASLDGTIRLWECGTGTT------IHTFNRKENPHDGVNSIALFVGTDRQ----LH--EISTSKKNNLEFG 256 (420)
T ss_dssp EETTTTEEEEEETTSCEEEEETTTTEE------EEEECBTTBTTCCEEEEEEEECCCSS----CG--GGCCCCCCTTCSS
T ss_pred EcCCCCEEEEEcCCCcEEEeECCCCce------eEEeecCCCCCCCccEEEEecCCcce----ee--ecccCcccceEEc
Confidence 999999999999999999999987532 22222223577789999987654110 00 000000011111
Q ss_pred ccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC-EEEE
Q 048801 484 FCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR-FVLA 562 (1715)
Q Consensus 484 ~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~-~LaT 562 (1715)
..+..|++++.||.|++||++++.... .....|...|.+++|+|++. +|++
T Consensus 257 ~~~~~l~~~~~dg~i~i~d~~~~~~~~----------------------------~~~~~~~~~v~~~~~~~~~~~~l~~ 308 (420)
T 3vl1_A 257 TYGKYVIAGHVSGVITVHNVFSKEQTI----------------------------QLPSKFTCSCNSLTVDGNNANYIYA 308 (420)
T ss_dssp CTTEEEEEEETTSCEEEEETTTCCEEE----------------------------EECCTTSSCEEEEEECSSCTTEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCceeE----------------------------EcccccCCCceeEEEeCCCCCEEEE
Confidence 235789999999999999998644211 11234677899999999999 9999
Q ss_pred EecCCeEEEEECCCCce-EEEEec-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC---------ceEEEEEcccc
Q 048801 563 AIMDCRICVWNAVDGSL-VHSLTG-HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG---------TPIRIYEIGRF 631 (1715)
Q Consensus 563 gs~DGtI~IWDl~sg~~-l~tL~g-H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg---------k~l~tl~~h~~ 631 (1715)
|+.||.|++||+.+++. +..+.+ |...|.++.+ + ++.+|++++.||.|+||++... .....+..+..
T Consensus 309 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (420)
T 3vl1_A 309 GYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-A-AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDD 386 (420)
T ss_dssp EETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-E-TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSC
T ss_pred EeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-C-CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCc
Confidence 99999999999999754 777776 6777888865 4 4679999999999999998763 22334556778
Q ss_pred eEEEEEEcCCCC---EEEEEeCCCeEEEEECCC
Q 048801 632 KLVDGKFSPDGT---SIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 632 ~V~svafSPDG~---~LAsgs~DG~I~IWdl~t 661 (1715)
.|.+++|+|+|. .|++++.+|.+.+|++..
T Consensus 387 ~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 387 AVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 899999999999 888888899999999854
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=345.45 Aligned_cols=304 Identities=15% Similarity=0.243 Sum_probs=243.8
Q ss_pred cEEEEecCCCCCeEEEEE-----CC-CCCEEEEEeCCCeeEEEECCCC-------CceEEEeCCCCCeEEEEecCCCCcc
Q 048801 276 FCLASCRGHEGDITDLAV-----SS-NNTLVASASNDFVIRVWRLPDG-------LPISVLRGHTGAVTAIAFSPRPSAI 342 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLaf-----Sp-Dg~lLASGS~DGtIrVWDl~tg-------~~l~~L~gH~~~VtsLafSPdg~~~ 342 (1715)
.+..+|.+|.+.|++++| ++ ++.+||+|+.|++|+|||+.++ .+...+.+|...|++++|+|++.
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~-- 89 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC-- 89 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--
Confidence 456789999999999999 76 8999999999999999999753 45677899999999999999987
Q ss_pred eEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEE
Q 048801 343 YQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFAR 422 (1715)
Q Consensus 343 ~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~Ir 422 (1715)
+|++++.|++|++||+.+++.+..+ ..|...|.+++|+|++++|++|+.|+.|+
T Consensus 90 -~l~s~s~D~~v~lwd~~~~~~~~~~-------------------------~~h~~~v~~v~~sp~~~~l~s~~~d~~i~ 143 (343)
T 2xzm_R 90 -FAISSSWDKTLRLWDLRTGTTYKRF-------------------------VGHQSEVYSVAFSPDNRQILSAGAEREIK 143 (343)
T ss_dssp -EEEEEETTSEEEEEETTSSCEEEEE-------------------------ECCCSCEEEEEECSSTTEEEEEETTSCEE
T ss_pred -EEEEEcCCCcEEEEECCCCcEEEEE-------------------------cCCCCcEEEEEECCCCCEEEEEcCCCEEE
Confidence 8999999999999999987654433 23567799999999999999999999999
Q ss_pred EEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEe
Q 048801 423 VWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWI 502 (1715)
Q Consensus 423 VWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWD 502 (1715)
+||+.... ........+|...|.+++|+|.+.... .......+|++++.||.|++||
T Consensus 144 ~wd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~~l~s~~~d~~i~iwd 200 (343)
T 2xzm_R 144 LWNILGEC-------KFSSAEKENHSDWVSCVRYSPIMKSAN----------------KVQPFAPYFASVGWDGRLKVWN 200 (343)
T ss_dssp EEESSSCE-------EEECCTTTSCSSCEEEEEECCCCCSCS----------------CCCSSCCEEEEEETTSEEEEEE
T ss_pred EEeccCCc-------eeeeecccCCCceeeeeeecccccccc----------------ccCCCCCEEEEEcCCCEEEEEc
Confidence 99996321 111222347889999999999752100 0001136899999999999999
Q ss_pred cCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC-CceEE
Q 048801 503 PRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD-GSLVH 581 (1715)
Q Consensus 503 l~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s-g~~l~ 581 (1715)
... .....+.+|...|.+++|+|+|++|++|+.|+.|+|||+.. .....
T Consensus 201 ~~~------------------------------~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~ 250 (343)
T 2xzm_R 201 TNF------------------------------QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250 (343)
T ss_dssp TTT------------------------------EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE
T ss_pred CCC------------------------------ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce
Confidence 432 11234567888999999999999999999999999999954 44444
Q ss_pred EEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEE--EEE-----------cccceEEEEEEcCCCCEEEEE
Q 048801 582 SLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIR--IYE-----------IGRFKLVDGKFSPDGTSIVLS 648 (1715)
Q Consensus 582 tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~--tl~-----------~h~~~V~svafSPDG~~LAsg 648 (1715)
.+ .+...|.+++|+| ++.+++ ++.|+.|+||++.+++.+. .+. +|...|.+++|+|+|++||+|
T Consensus 251 ~~-~~~~~v~~v~~sp-~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg 327 (343)
T 2xzm_R 251 EF-DAGSTINQIAFNP-KLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAG 327 (343)
T ss_dssp EE-ECSSCEEEEEECS-SSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEE
T ss_pred ee-cCCCcEEEEEECC-CCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEe
Confidence 44 3556799999999 567765 4568889999998876544 443 466779999999999999999
Q ss_pred eCCCeEEEEECCCCc
Q 048801 649 DDVGQIYLLNTGQGE 663 (1715)
Q Consensus 649 s~DG~I~IWdl~tGe 663 (1715)
+.||.|++|++.+|+
T Consensus 328 ~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 328 FTDGVIRTFSFETSA 342 (343)
T ss_dssp ETTSEEEEEEEEEEE
T ss_pred cCCceEEEEEEEccC
Confidence 999999999987653
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=342.04 Aligned_cols=306 Identities=19% Similarity=0.191 Sum_probs=239.1
Q ss_pred CCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC--CceEEE-eC-CCCCeEEEEecCCCCcceEEEEe
Q 048801 273 ETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG--LPISVL-RG-HTGAVTAIAFSPRPSAIYQLLSS 348 (1715)
Q Consensus 273 ~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg--~~l~~L-~g-H~~~VtsLafSPdg~~~~~LaSg 348 (1715)
.+.+++.++.+|.+.|++++|+++ +||+|+.|++|+||++.++ ..+..+ .+ |...|++++|+|++. +|+++
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~---~las~ 76 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS---LLAAG 76 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSS---EEEEE
T ss_pred cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCC---EEEEE
Confidence 345678899999999999999988 9999999999999999875 345556 44 999999999999987 89999
Q ss_pred cCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCC
Q 048801 349 SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 349 S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t 428 (1715)
+.|++|+|||+....... . ..........|...|.+++|+|+|++|++|+.|+.|+|||+..
T Consensus 77 s~D~~v~iw~~~~~~~~~-~-----------------~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~ 138 (330)
T 2hes_X 77 SFDSTVSIWAKEESADRT-F-----------------EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138 (330)
T ss_dssp ETTSCEEEEEC--------C-----------------CCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred eCCCcEEEEEcccCcCcc-c-----------------cceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccC
Confidence 999999999986432100 0 0000112245678899999999999999999999999999953
Q ss_pred CCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCcc
Q 048801 429 SSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS 508 (1715)
Q Consensus 429 ~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~ 508 (1715)
.. .....+..+.+|...|.+++|+|++ .+|++++.|++|++||+.++.
T Consensus 139 ~~-----~~~~~~~~~~~h~~~v~~v~~~p~~--------------------------~~l~s~s~D~~i~iW~~~~~~- 186 (330)
T 2hes_X 139 SG-----EEYECISVLQEHSQDVKHVIWHPSE--------------------------ALLASSSYDDTVRIWKDYDDD- 186 (330)
T ss_dssp TC-----CCCEEEEEECCCSSCEEEEEECSSS--------------------------SEEEEEETTSCEEEEEEETTE-
T ss_pred CC-----CCeEEEEEeccCCCceEEEEECCCC--------------------------CEEEEEcCCCeEEEEECCCCC-
Confidence 21 1234567789999999999999986 799999999999999986421
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC--CCEEEEEecCCeEEEEECCCC--------c
Q 048801 509 HGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD--NRFVLAAIMDCRICVWNAVDG--------S 578 (1715)
Q Consensus 509 ~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD--G~~LaTgs~DGtI~IWDl~sg--------~ 578 (1715)
...+..+.+|...|.+++|+|+ +.+|++|+.|++|+||++..+ .
T Consensus 187 --------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 187 --------------------------WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp --------------------------EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred --------------------------eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 0123456678899999999998 779999999999999998764 3
Q ss_pred eEEEEec-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc--eEEEE-Ecccc-eEEEEEEcC--CCCEEEEEeCC
Q 048801 579 LVHSLTG-HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT--PIRIY-EIGRF-KLVDGKFSP--DGTSIVLSDDV 651 (1715)
Q Consensus 579 ~l~tL~g-H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk--~l~tl-~~h~~-~V~svafSP--DG~~LAsgs~D 651 (1715)
+...+.+ |...|++++|++ ++ +|++++.||+|+||++.+++ .+... ..|.. .|.+++|+| ++++||+|+.|
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~-~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~D 318 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGF-NG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDD 318 (330)
T ss_dssp EEEECCSCCSSCEEEEEECT-TS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETT
T ss_pred EeeecccccccceEEEEEcC-CC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCC
Confidence 4555655 999999999997 44 78899999999999998874 33333 45665 899999999 79999999999
Q ss_pred CeEEEEECCC
Q 048801 652 GQIYLLNTGQ 661 (1715)
Q Consensus 652 G~I~IWdl~t 661 (1715)
|.|+||++..
T Consensus 319 g~v~~W~~~~ 328 (330)
T 2hes_X 319 GIVNFWSLEK 328 (330)
T ss_dssp SEEEEEEC--
T ss_pred CcEEEEEecc
Confidence 9999999854
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=350.56 Aligned_cols=345 Identities=21% Similarity=0.315 Sum_probs=274.7
Q ss_pred eeEEEEcCCCCCe-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 234 QNIKKLRGHRDAV-YCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 234 k~l~~L~GH~~~V-t~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
.....|.+|.+.| +|+.| ++++|++|+.||.|+|||+.+++.+..+.+|.+.|++++|++++ +|++|+.||+|+||
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 3456899999885 66666 56799999999999999999999999999999999999999988 99999999999999
Q ss_pred ECCCCCceEEEeCCCCCeEEEEecC--CCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCC
Q 048801 313 RLPDGLPISVLRGHTGAVTAIAFSP--RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPS 390 (1715)
Q Consensus 313 Dl~tg~~l~~L~gH~~~VtsLafSP--dg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~ 390 (1715)
|+.++..+..+.+|...|.+++|++ ++. +|++++.||+|++||+.++.................. ........
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~---~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 263 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIK---YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT--PEENPYFV 263 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCE---EEEEEETTSCEEEEECCCCCCC------CCSSEEESC--GGGCTTEE
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCC---EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeec--cCCCeEEE
Confidence 9999999999999999999999995 444 8999999999999999887654332211110000000 00000001
Q ss_pred CCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccc
Q 048801 391 SSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470 (1715)
Q Consensus 391 ~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~ 470 (1715)
.....|...|.++ ++++.+|++|+.||.|++||+.++ ..+..+.+|...|.+++|+|++
T Consensus 264 ~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~---------- 322 (464)
T 3v7d_B 264 GVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM---------KCLYILSGHTDRIYSTIYDHER---------- 322 (464)
T ss_dssp EEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEEETTT----------
T ss_pred EEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC---------cEEEEecCCCCCEEEEEEcCCC----------
Confidence 1233455556665 678999999999999999999864 4577788999999999999986
Q ss_pred ccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeE
Q 048801 471 FKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNM 550 (1715)
Q Consensus 471 ~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vts 550 (1715)
..|++|+.||.|++||+.+++ ....+.+|...|.+
T Consensus 323 ----------------~~l~sg~~dg~i~vwd~~~~~-----------------------------~~~~~~~h~~~v~~ 357 (464)
T 3v7d_B 323 ----------------KRCISASMDTTIRIWDLENGE-----------------------------LMYTLQGHTALVGL 357 (464)
T ss_dssp ----------------TEEEEEETTSCEEEEETTTTE-----------------------------EEEEECCCSSCEEE
T ss_pred ----------------CEEEEEeCCCcEEEEECCCCc-----------------------------EEEEEeCCCCcEEE
Confidence 799999999999999998643 23445678889999
Q ss_pred EEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEE-EEcc
Q 048801 551 IVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI-YEIG 629 (1715)
Q Consensus 551 lafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t-l~~h 629 (1715)
++|+ +.+|++|+.||.|++||+.++.....+. |...+..++|++ ++.+|++|+ ||.|+|||+.+++++.. +..+
T Consensus 358 ~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~ 432 (464)
T 3v7d_B 358 LRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRSGKLVHANILKD 432 (464)
T ss_dssp EEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEE-CSSEEEEEE-TTEEEEEETTTCCEEESCTTTT
T ss_pred EEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEe-CCCEEEEec-CCeEEEEECCCCcEEehhhccC
Confidence 9997 6899999999999999999988776664 666788889999 778888888 99999999999999986 5567
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 630 RFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 630 ~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
...|.+++|+ +..++++++.+|.+.+|-
T Consensus 433 ~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 433 ADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp CSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 8889999997 344555667777666553
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=375.03 Aligned_cols=391 Identities=20% Similarity=0.259 Sum_probs=312.5
Q ss_pred CCCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 048801 190 MQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKI 269 (1715)
Q Consensus 190 ~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrI 269 (1715)
.|.+.|.++.+++.|..++... .......|.+.+.+.+..+.+|.+.|++++|+|+|++|++|+.||.|+|
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~---------~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTL---------YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEE---------TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEe---------CCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 4567789999988775544332 2223334556678889999999999999999999999999999999999
Q ss_pred EeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC-CceEEEeCCCCCeEEEEecC-CCCcceEEEE
Q 048801 270 WSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG-LPISVLRGHTGAVTAIAFSP-RPSAIYQLLS 347 (1715)
Q Consensus 270 WDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg-~~l~~L~gH~~~VtsLafSP-dg~~~~~LaS 347 (1715)
||+.+++.+..+.+|.+.|++++|+|++.+|++|+.||+|+||++.++ .....+.+|...|.+++|+| ++. .|++
T Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~---~l~~ 158 (814)
T 3mkq_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS---TFAS 158 (814)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE---EEEE
T ss_pred EECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC---EEEE
Confidence 999999999999999999999999999999999999999999999987 66788889999999999999 555 8999
Q ss_pred ecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc--CCCeEEEecCCCeEEEEe
Q 048801 348 SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA--NGTVFVTGSSDTFARVWS 425 (1715)
Q Consensus 348 gS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp--dG~~LatGs~DG~IrVWD 425 (1715)
++.||+|++||+.++.....+.. .+...+.+++|+| ++.+|++|+.||.|++||
T Consensus 159 ~~~dg~v~vwd~~~~~~~~~~~~------------------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d 214 (814)
T 3mkq_A 159 GCLDRTVKVWSLGQSTPNFTLTT------------------------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214 (814)
T ss_dssp EETTSEEEEEETTCSSCSEEEEC------------------------CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEE
T ss_pred EeCCCeEEEEECCCCcceeEEec------------------------CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 99999999999987664433321 1235689999999 999999999999999999
Q ss_pred CCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC
Q 048801 426 ACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 505 (1715)
Q Consensus 426 l~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t 505 (1715)
+.++ ..+..+.+|...|.+++|+|++ ..|++++.||.|++||+.+
T Consensus 215 ~~~~---------~~~~~~~~~~~~v~~~~~~~~~--------------------------~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 215 YQTK---------SCVATLEGHMSNVSFAVFHPTL--------------------------PIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp TTTT---------EEEEEEECCSSCEEEEEECSSS--------------------------SEEEEEETTSCEEEEETTT
T ss_pred CCCC---------cEEEEEcCCCCCEEEEEEcCCC--------------------------CEEEEEeCCCeEEEEECCC
Confidence 9764 3467788999999999999986 7999999999999999986
Q ss_pred CccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCE-EEEEecCCeEEEEECCCCceEE---
Q 048801 506 RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRF-VLAAIMDCRICVWNAVDGSLVH--- 581 (1715)
Q Consensus 506 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~-LaTgs~DGtI~IWDl~sg~~l~--- 581 (1715)
++ ....+..+...|.+++|+|+|.. +++++.++.+.+|++..+....
T Consensus 260 ~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (814)
T 3mkq_A 260 YK-----------------------------VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLD 310 (814)
T ss_dssp CS-----------------------------EEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEEC
T ss_pred Cc-----------------------------EEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEEC
Confidence 43 22334556678999999999873 2444557778889876432211
Q ss_pred ----------------------------------------EEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 582 ----------------------------------------SLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 582 ----------------------------------------tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
.+..+...+.+++|+| +++++++++ ||.+.||++....
T Consensus 311 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~ 388 (814)
T 3mkq_A 311 PVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWR 388 (814)
T ss_dssp SSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTE
T ss_pred CCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECcccc
Confidence 1123455678999999 778888887 8999999986544
Q ss_pred eEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccccceeecCCC---ccEEE-cCCCCe
Q 048801 622 PIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKYDQFFLGDY---RPLIR-DSLGNV 689 (1715)
Q Consensus 622 ~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~~~~~~fs~D~---r~L~~-d~~g~v 689 (1715)
.. +.+.+.+++|+|||++||+++.+|.|.+|+.-.+. ........|++|+ ..|+. ..++.+
T Consensus 389 ~~-----~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~~--~~~v~~~~~s~dg~~~~~l~~~~~d~~v 453 (814)
T 3mkq_A 389 NK-----AFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEV--TSWSVPMHSAIDRLFSGALLGVKSDGFV 453 (814)
T ss_dssp EE-----EEEECSEEEECTTSSCEEEECTTCCEEEEETTEEC--TTCCCCCSSCCCEEECSSSEEEEETTEE
T ss_pred cc-----CCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCCc--cceEEcCCcCccceecceEEEEecCCEE
Confidence 32 24578899999999999999999999999865442 2334556788998 34443 444443
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=343.15 Aligned_cols=291 Identities=19% Similarity=0.290 Sum_probs=243.2
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCC------------------CeEEEEecCCCCcceE
Q 048801 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTG------------------AVTAIAFSPRPSAIYQ 344 (1715)
Q Consensus 283 gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~------------------~VtsLafSPdg~~~~~ 344 (1715)
+|.+.|++++|+|||++||+|+ ++.++||++.++..+..+..|.. .|++++|+|++. +
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~---~ 137 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK---F 137 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS---E
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC---E
Confidence 5999999999999999999987 68999999999998888876542 399999999998 8
Q ss_pred EEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEE
Q 048801 345 LLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVW 424 (1715)
Q Consensus 345 LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVW 424 (1715)
|++|+.|++|++||+.+++.+..+ ..|...|.+++|+|++.+|++|+.|+.|++|
T Consensus 138 l~s~~~d~~i~iwd~~~~~~~~~~-------------------------~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iw 192 (393)
T 1erj_A 138 LATGAEDRLIRIWDIENRKIVMIL-------------------------QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192 (393)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEE-------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEEcCCCeEEEEECCCCcEEEEE-------------------------ccCCCCEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 999999999999999877644332 2356779999999999999999999999999
Q ss_pred eCCCCCccCCCCCceeeeeecCCCCCeeEEEEcc-CcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEec
Q 048801 425 SACKSSVEDSEQPIHELDVLSGHENDVNYVQFSG-CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIP 503 (1715)
Q Consensus 425 Dl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafsp-dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl 503 (1715)
|+.+++ ....+. +...+.+++|+| ++ .+|++|+.||.|++||+
T Consensus 193 d~~~~~---------~~~~~~-~~~~v~~~~~~~~~~--------------------------~~l~~~s~d~~v~iwd~ 236 (393)
T 1erj_A 193 DLRTGQ---------CSLTLS-IEDGVTTVAVSPGDG--------------------------KYIAAGSLDRAVRVWDS 236 (393)
T ss_dssp ETTTTE---------EEEEEE-CSSCEEEEEECSTTC--------------------------CEEEEEETTSCEEEEET
T ss_pred ECCCCe---------eEEEEE-cCCCcEEEEEECCCC--------------------------CEEEEEcCCCcEEEEEC
Confidence 998753 233333 556899999998 44 79999999999999999
Q ss_pred CCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC-------
Q 048801 504 RSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD------- 576 (1715)
Q Consensus 504 ~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s------- 576 (1715)
.++.....+. .......+|...|.+++|+|+|++|++|+.|+.|+|||+.+
T Consensus 237 ~~~~~~~~~~----------------------~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~ 294 (393)
T 1erj_A 237 ETGFLVERLD----------------------SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 294 (393)
T ss_dssp TTCCEEEEEC----------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred CCCcEEEeec----------------------ccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccc
Confidence 8754322110 00112246788999999999999999999999999999975
Q ss_pred -----CceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcC------CCCEE
Q 048801 577 -----GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSP------DGTSI 645 (1715)
Q Consensus 577 -----g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSP------DG~~L 645 (1715)
+.+...+.+|...|.+++|+| ++.+|++|+.||.|++||+.+++++..+.+|...|.+++|++ ++.+|
T Consensus 295 ~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l 373 (393)
T 1erj_A 295 KTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 373 (393)
T ss_dssp ------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEE
T ss_pred cCCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEE
Confidence 345677889999999999999 778999999999999999999999999999999999999986 78999
Q ss_pred EEEeCCCeEEEEECCC
Q 048801 646 VLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 646 Asgs~DG~I~IWdl~t 661 (1715)
|+|+.||.|+||++..
T Consensus 374 ~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 374 ATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEETTSEEEEEEEEE
T ss_pred EEECCCCcEEECcccc
Confidence 9999999999999754
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-34 Score=342.85 Aligned_cols=314 Identities=14% Similarity=0.126 Sum_probs=255.8
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc------EEEEecCCCCCeEEEEECCC----C---CE
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF------CLASCRGHEGDITDLAVSSN----N---TL 299 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk------~l~tL~gHs~~VtsLafSpD----g---~l 299 (1715)
......|.+|.+.|++|+|+| ++|++|+.||.|+||++.++. .+..+.+|...|++++|+|+ + .+
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 345677899999999999998 799999999999999999988 78889999999999999999 9 99
Q ss_pred EEEEeCCCeeEEEECCCCCc-----eEEEeCC-----CCCeEEEEec----CCCCcceE-EEEecCCCcEEEEecCC---
Q 048801 300 VASASNDFVIRVWRLPDGLP-----ISVLRGH-----TGAVTAIAFS----PRPSAIYQ-LLSSSDDGTCRIWDARY--- 361 (1715)
Q Consensus 300 LASGS~DGtIrVWDl~tg~~-----l~~L~gH-----~~~VtsLafS----Pdg~~~~~-LaSgS~DGtVrIWDl~t--- 361 (1715)
|++++.||.|++|++.++.. +..+..| ...|.+++|+ |++. + |++++.||.|++||+.+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS---HRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C---EEEEEEETTSCEEEEEEESSSS
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc---eEEEEEeCCCcEEEEeCCcccc
Confidence 99999999999999999887 8899989 5999999999 8887 7 99999999999999987
Q ss_pred ---CCCcc-----eecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccC
Q 048801 362 ---SQYSP-----RIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVED 433 (1715)
Q Consensus 362 ---g~~l~-----~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~ 433 (1715)
+..+. .+.. .......|...|.+++|+|++ +|++|+.||.|++||+.++
T Consensus 161 ~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~---- 217 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQG------------------TVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL---- 217 (397)
T ss_dssp HHHHTTTCCCCEEEEEE------------------EECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT----
T ss_pred ccccceeeccCcceeee------------------eeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC----
Confidence 44332 1100 000113356779999999999 9999999999999999864
Q ss_pred CCCCceeeeeecC---C---CCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC---CeEEEEecC
Q 048801 434 SEQPIHELDVLSG---H---ENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD---GSAIIWIPR 504 (1715)
Q Consensus 434 ~~~~~~~l~~l~g---H---~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D---GsIrIWDl~ 504 (1715)
..+..+.. | ...|.+++|+|++ .+|++++.| |.|++||+.
T Consensus 218 -----~~~~~~~~~~~h~~~~~~i~~i~~~~~~--------------------------~~l~~~~~d~~~g~i~i~d~~ 266 (397)
T 1sq9_A 218 -----RPLYNFESQHSMINNSNSIRSVKFSPQG--------------------------SLLAIAHDSNSFGCITLYETE 266 (397)
T ss_dssp -----EEEEEEECCC---CCCCCEEEEEECSST--------------------------TEEEEEEEETTEEEEEEEETT
T ss_pred -----ceeEEEeccccccccCCccceEEECCCC--------------------------CEEEEEecCCCCceEEEEECC
Confidence 34566677 8 9999999999986 799999999 999999998
Q ss_pred CCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 048801 505 SRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT 584 (1715)
Q Consensus 505 t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~ 584 (1715)
+++....+.. +. ...........|...|.+++|+|++++|++++.||.|+|||+.+++++..+.
T Consensus 267 ~~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 267 FGERIGSLSV---------PT-------HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp TCCEEEEECB---------C---------------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CCcccceecc---------Cc-------ccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 7543222100 00 0000011122377899999999999999999999999999999999999999
Q ss_pred ------cC---------------CCCeEEEEEccCCC---------cEEEEEeCCCcEEEEECCCCc
Q 048801 585 ------GH---------------SASSYVLDVHPFNP---------RIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 585 ------gH---------------~~~V~sLafSP~dg---------~lLaSgs~DGtI~VWDl~tgk 621 (1715)
+| ...|++++|+|++. .+|++|+.||.|+||++.+|+
T Consensus 331 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 331 MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 88 99999999999432 799999999999999998764
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=330.65 Aligned_cols=304 Identities=15% Similarity=0.165 Sum_probs=263.1
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEE
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVr 355 (1715)
.....+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+.+|...|++++|+|++. +|++++.||.|+
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~s~~~dg~i~ 99 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK---YCVTGSADYSIK 99 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS---EEEEEETTTEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCC---EEEEEeCCCeEE
Confidence 34456899999999999999999999999999999999999999999999999999999999987 899999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC-----CeEEEEeCCCCC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD-----TFARVWSACKSS 430 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D-----G~IrVWDl~t~~ 430 (1715)
+||+.+++.+..+. +...|.+++|+|++.+|++++.+ |.|++|++....
T Consensus 100 iwd~~~~~~~~~~~--------------------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~ 153 (369)
T 3zwl_B 100 LWDVSNGQCVATWK--------------------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS 153 (369)
T ss_dssp EEETTTCCEEEEEE--------------------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred EEECCCCcEEEEee--------------------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence 99999887655542 24569999999999999999998 999999998754
Q ss_pred ccCCCC--CceeeeeecCCCC--CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCC
Q 048801 431 VEDSEQ--PIHELDVLSGHEN--DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 506 (1715)
Q Consensus 431 ~~~~~~--~~~~l~~l~gH~~--~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~ 506 (1715)
...... ....+..+..|.. .+.+++|+|++ ..|++++.||.|++||+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~l~~~~~dg~i~i~d~~~~ 207 (369)
T 3zwl_B 154 ATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG--------------------------KYIIAGHKDGKISKYDVSNN 207 (369)
T ss_dssp TTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG--------------------------CEEEEEETTSEEEEEETTTT
T ss_pred cceeecccccceeeeccCCcCccceeEEEEcCCC--------------------------CEEEEEcCCCEEEEEECCCC
Confidence 311110 1123345556666 99999999986 79999999999999999852
Q ss_pred ccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecC
Q 048801 507 RSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH 586 (1715)
Q Consensus 507 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH 586 (1715)
. .....+..|...|.+++|+|++.+|++++.|+.|++||+.+++.+..+. +
T Consensus 208 ~----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~ 258 (369)
T 3zwl_B 208 Y----------------------------EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-T 258 (369)
T ss_dssp T----------------------------EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-C
T ss_pred c----------------------------EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-C
Confidence 1 1233455678899999999999999999999999999999999999888 7
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCC--------------cEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCC
Q 048801 587 SASSYVLDVHPFNPRIAMSAGYDG--------------RTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG 652 (1715)
Q Consensus 587 ~~~V~sLafSP~dg~lLaSgs~DG--------------tI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG 652 (1715)
...+.+++|+| ++.++++++.++ .|++||+.+++++..+.+|...|.+++|+|+|++|++++.||
T Consensus 259 ~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 337 (369)
T 3zwl_B 259 DCPLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDG 337 (369)
T ss_dssp SSCEEEEEECS-SSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCceeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCC
Confidence 78899999999 777888888887 899999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCcc
Q 048801 653 QIYLLNTGQGES 664 (1715)
Q Consensus 653 ~I~IWdl~tGe~ 664 (1715)
.|+||++..+..
T Consensus 338 ~v~iw~~~~~~~ 349 (369)
T 3zwl_B 338 FIRLHHFEKSYF 349 (369)
T ss_dssp EEEEEEECHHHH
T ss_pred eEEEEECccccc
Confidence 999999987643
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=346.27 Aligned_cols=285 Identities=22% Similarity=0.392 Sum_probs=248.8
Q ss_pred CCCCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 048801 189 HMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVK 268 (1715)
Q Consensus 189 ~~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIr 268 (1715)
..|...|.++.|.+.+..+. ++..+.....|.+.+.+.+.+|.+|.+.|++++|+|+|++|++|+.||+|+
T Consensus 105 ~gh~~~V~~~~~~p~~~~l~---------s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~ 175 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFSVMV---------SASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175 (410)
T ss_dssp ECCSSCEEEEEECSSSSEEE---------EEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred cccCCcEEEEEEcCCCCEEE---------EEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 35678889999887764433 333344444556667788899999999999999999999999999999999
Q ss_pred EEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEe
Q 048801 269 IWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348 (1715)
Q Consensus 269 IWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSg 348 (1715)
|||+.+++++.++.+|...|.+++|+|++.+|++|+.|++|++||+.++.++..+.+|...|.+++|+|++. +|++|
T Consensus 176 iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~---~l~s~ 252 (410)
T 1vyh_C 176 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT---LIASC 252 (410)
T ss_dssp EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS---EEEEE
T ss_pred EEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC---EEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988 89999
Q ss_pred cCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC--------------------
Q 048801 349 SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN-------------------- 408 (1715)
Q Consensus 349 S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd-------------------- 408 (1715)
+.||+|++||+.++.....+ ..|...|.+++|+|+
T Consensus 253 s~D~~v~vwd~~~~~~~~~~-------------------------~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (410)
T 1vyh_C 253 SNDQTVRVWVVATKECKAEL-------------------------REHRHVVECISWAPESSYSSISEATGSETKKSGKP 307 (410)
T ss_dssp ETTSCEEEEETTTCCEEEEE-------------------------CCCSSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred cCCCeEEEEECCCCceeeEe-------------------------cCCCceEEEEEEcCcccccchhhhccccccccCCC
Confidence 99999999999887654433 234667999999986
Q ss_pred CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCce
Q 048801 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN 488 (1715)
Q Consensus 409 G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~ 488 (1715)
|.+|++|+.|+.|++||+.++ .++..+.+|...|.+++|+|++ .+
T Consensus 308 g~~l~sgs~D~~i~iwd~~~~---------~~~~~~~~h~~~v~~v~~~~~g--------------------------~~ 352 (410)
T 1vyh_C 308 GPFLLSGSRDKTIKMWDVSTG---------MCLMTLVGHDNWVRGVLFHSGG--------------------------KF 352 (410)
T ss_dssp CCEEEEEETTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECSSS--------------------------SC
T ss_pred CCEEEEEeCCCeEEEEECCCC---------ceEEEEECCCCcEEEEEEcCCC--------------------------CE
Confidence 678999999999999999874 4577888999999999999986 79
Q ss_pred EEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCe
Q 048801 489 IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCR 568 (1715)
Q Consensus 489 LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGt 568 (1715)
|++|+.||+|++||+.+++ ....+.+|...|++++|+|++.+|++|+.|++
T Consensus 353 l~s~s~D~~i~vwd~~~~~-----------------------------~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~ 403 (410)
T 1vyh_C 353 ILSCADDKTLRVWDYKNKR-----------------------------CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 403 (410)
T ss_dssp EEEEETTTEEEEECCTTSC-----------------------------CCEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred EEEEeCCCeEEEEECCCCc-----------------------------eEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 9999999999999987533 33456678889999999999999999999999
Q ss_pred EEEEEC
Q 048801 569 ICVWNA 574 (1715)
Q Consensus 569 I~IWDl 574 (1715)
|+||++
T Consensus 404 i~vW~~ 409 (410)
T 1vyh_C 404 VKVWEC 409 (410)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999986
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=339.18 Aligned_cols=304 Identities=16% Similarity=0.295 Sum_probs=247.9
Q ss_pred CCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCC-EEEEEeCCCeeEEEEC----CCCC------ceEEEeC-------
Q 048801 264 DRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT-LVASASNDFVIRVWRL----PDGL------PISVLRG------- 325 (1715)
Q Consensus 264 DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~-lLASGS~DGtIrVWDl----~tg~------~l~~L~g------- 325 (1715)
...+.+|++...........|.+.|++++|+|++. +||+|+.||.|+||++ .++. ....+..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 1r5m_A 24 NSIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSAS 103 (425)
T ss_dssp ----------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC--
T ss_pred ccccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccc
Confidence 34566888876665555566779999999999999 9999999999999999 8888 4555554
Q ss_pred ---CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeE
Q 048801 326 ---HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILC 402 (1715)
Q Consensus 326 ---H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vts 402 (1715)
|.+.|++++|+|++. +|++++.||.|++|| .++..+..+ ..|...|.+
T Consensus 104 ~~~~~~~v~~~~~s~~~~---~l~~~~~dg~i~i~~-~~~~~~~~~-------------------------~~~~~~v~~ 154 (425)
T 1r5m_A 104 SGKTTNQVTCLAWSHDGN---SIVTGVENGELRLWN-KTGALLNVL-------------------------NFHRAPIVS 154 (425)
T ss_dssp ----CBCEEEEEECTTSS---EEEEEETTSCEEEEE-TTSCEEEEE-------------------------CCCCSCEEE
T ss_pred ccCCCCceEEEEEcCCCC---EEEEEeCCCeEEEEe-CCCCeeeec-------------------------cCCCccEEE
Confidence 688999999999987 899999999999999 344333222 235677999
Q ss_pred EEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCC---------------eeEEEEccCcccccccc
Q 048801 403 CAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEND---------------VNYVQFSGCAVASRSAM 467 (1715)
Q Consensus 403 lafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~---------------V~sLafspdg~as~~~~ 467 (1715)
++|+|++.+|++++.||.|++||+.++. .+..+..+... +.+++|+++
T Consensus 155 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 217 (425)
T 1r5m_A 155 VKWNKDGTHIISMDVENVTILWNVISGT---------VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-------- 217 (425)
T ss_dssp EEECTTSSEEEEEETTCCEEEEETTTTE---------EEEEECCC---------------CCCBSCCEEEET--------
T ss_pred EEECCCCCEEEEEecCCeEEEEECCCCc---------EEEEeeccccCccceeeccccCCcceeeEEEEcCC--------
Confidence 9999999999999999999999997643 34455555554 777788775
Q ss_pred cccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCC
Q 048801 468 SDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG 547 (1715)
Q Consensus 468 ~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~ 547 (1715)
..+++++.||.|++||+.++. ....+..|...
T Consensus 218 -------------------~~~~~~~~~g~i~~~d~~~~~-----------------------------~~~~~~~~~~~ 249 (425)
T 1r5m_A 218 -------------------DKFVIPGPKGAIFVYQITEKT-----------------------------PTGKLIGHHGP 249 (425)
T ss_dssp -------------------TEEEEECGGGCEEEEETTCSS-----------------------------CSEEECCCSSC
T ss_pred -------------------CEEEEEcCCCeEEEEEcCCCc-----------------------------eeeeeccCCCc
Confidence 479999999999999998633 23345567889
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE
Q 048801 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 548 VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~ 627 (1715)
|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+| ++ ++++++.||.|++||+.+++++..+.
T Consensus 250 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~ 327 (425)
T 1r5m_A 250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQNTLLALSI 327 (425)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCCCcEeEecc
Confidence 99999999999999999999999999999999999999999999999999 55 88999999999999999999999999
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 628 IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 628 ~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
.|...|.+++|+|+|++|++++.||.|+||++.+++
T Consensus 328 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 328 VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 899999999999999999999999999999998776
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=365.60 Aligned_cols=294 Identities=22% Similarity=0.342 Sum_probs=248.2
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCC-----CcEEEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSG-RFVITGSDDRLVKIWSMET-----AFCLASCRGHEGDITDLAVSSNNTLVASASND 306 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG-~~LaTGS~DGtIrIWDl~t-----gk~l~tL~gHs~~VtsLafSpDg~lLASGS~D 306 (1715)
+.....|++|.+.|+||+|++++ .+|+||+.||+|+||++.+ +.....+.+|...|++++|+|++++|++|+.|
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 45566799999999999999875 7999999999999999875 34567899999999999999999999999999
Q ss_pred CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
|+|+|||+.++..+..+.+|...|++++|+|++. +|++++.|++|++||+...... .+.
T Consensus 452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~---~l~s~s~D~~i~iwd~~~~~~~-~~~----------------- 510 (694)
T 3dm0_A 452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR---QIVSASRDRTIKLWNTLGECKY-TIS----------------- 510 (694)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS---CEEEEETTSCEEEECTTSCEEE-EEC-----------------
T ss_pred CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCC---EEEEEeCCCEEEEEECCCCcce-eec-----------------
Confidence 9999999999999999999999999999999988 7999999999999997543211 110
Q ss_pred CCCCCCCCCCCcceeEEEEccCC--CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANG--TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASR 464 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG--~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~ 464 (1715)
.....|...|.|++|+|++ ..|++|+.|+.|+|||+.+. .....+.+|.+.|.+++|+|++
T Consensus 511 ----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~---------~~~~~~~~h~~~v~~v~~spdg---- 573 (694)
T 3dm0_A 511 ----EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC---------KLRSTLAGHTGYVSTVAVSPDG---- 573 (694)
T ss_dssp ----SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTS----
T ss_pred ----cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC---------cEEEEEcCCCCCEEEEEEeCCC----
Confidence 0113467779999999987 58999999999999999864 3467788999999999999986
Q ss_pred ccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCC
Q 048801 465 SAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPT 544 (1715)
Q Consensus 465 ~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h 544 (1715)
.+|++|+.||+|++||+.+++.+.. ..+
T Consensus 574 ----------------------~~l~sg~~Dg~i~iwd~~~~~~~~~------------------------------~~~ 601 (694)
T 3dm0_A 574 ----------------------SLCASGGKDGVVLLWDLAEGKKLYS------------------------------LEA 601 (694)
T ss_dssp ----------------------SEEEEEETTSBCEEEETTTTEEEEC------------------------------CBC
T ss_pred ----------------------CEEEEEeCCCeEEEEECCCCceEEE------------------------------ecC
Confidence 7999999999999999987542111 112
Q ss_pred CCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCC-------------------CCeEEEEEccCCCcEEEE
Q 048801 545 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHS-------------------ASSYVLDVHPFNPRIAMS 605 (1715)
Q Consensus 545 ~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~-------------------~~V~sLafSP~dg~lLaS 605 (1715)
...|.+++|+|++.+|++++ ++.|+|||+.++..+..+..+. ..+++++|+| ++.+|++
T Consensus 602 ~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp-dg~~l~s 679 (694)
T 3dm0_A 602 NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA-DGSTLFS 679 (694)
T ss_dssp SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT-TSSEEEE
T ss_pred CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC-CCCEEEE
Confidence 45699999999998888765 5679999999999888775432 1378999999 7889999
Q ss_pred EeCCCcEEEEECC
Q 048801 606 AGYDGRTIVWDIW 618 (1715)
Q Consensus 606 gs~DGtI~VWDl~ 618 (1715)
|+.||+|+||++.
T Consensus 680 gs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 680 GYTDGVIRVWGIG 692 (694)
T ss_dssp EETTSEEEEEEC-
T ss_pred EcCCCeEEEEecc
Confidence 9999999999985
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=319.68 Aligned_cols=320 Identities=13% Similarity=0.220 Sum_probs=259.8
Q ss_pred CCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 048801 192 ADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWS 271 (1715)
Q Consensus 192 ~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWD 271 (1715)
...+..+++.+.|..++....... ...+. .........+.+|...|++++|+|++++|++++ ||.|+||+
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~ 78 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDA--------LIGPG-IPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWD 78 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTS--------SSSTT-CCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEE
T ss_pred CCceeEEEECCCCCEEEeecCCCc--------Eeccc-cCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEE
Confidence 345667778777765543321111 11111 122233334458999999999999999999999 99999999
Q ss_pred CCCCcE---EEEec--CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC--ceEEEeCCCCCeEEEEecCCCCcceE
Q 048801 272 METAFC---LASCR--GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL--PISVLRGHTGAVTAIAFSPRPSAIYQ 344 (1715)
Q Consensus 272 l~tgk~---l~tL~--gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~--~l~~L~gH~~~VtsLafSPdg~~~~~ 344 (1715)
+.++.. +..+. +|...|++++|+|++++|++++.||.|++||+.++. ....+..|...|++++|+|++. +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~ 155 (337)
T 1gxr_A 79 ISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK---V 155 (337)
T ss_dssp TTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS---E
T ss_pred CCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCC---E
Confidence 987653 33333 799999999999999999999999999999999887 5677888999999999999987 8
Q ss_pred EEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEE
Q 048801 345 LLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVW 424 (1715)
Q Consensus 345 LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVW 424 (1715)
|++++.||.|++||+.+++....+ ..|...|.+++|+|++.+|++++.||.|++|
T Consensus 156 l~~~~~dg~v~~~d~~~~~~~~~~-------------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~ 210 (337)
T 1gxr_A 156 CFSCCSDGNIAVWDLHNQTLVRQF-------------------------QGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210 (337)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEE-------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEEeCCCcEEEEeCCCCceeeee-------------------------ecccCceEEEEECCCCCEEEEEecCCcEEEE
Confidence 999999999999999887654433 1245679999999999999999999999999
Q ss_pred eCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecC
Q 048801 425 SACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPR 504 (1715)
Q Consensus 425 Dl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~ 504 (1715)
|+.+++ .+..+ .+...+.+++|+|++ ..|++++.||.|++||+.
T Consensus 211 d~~~~~---------~~~~~-~~~~~v~~~~~s~~~--------------------------~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 211 DLREGR---------QLQQH-DFTSQIFSLGYCPTG--------------------------EWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp ETTTTE---------EEEEE-ECSSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEETT
T ss_pred ECCCCc---------eEeee-cCCCceEEEEECCCC--------------------------CEEEEEcCCCcEEEEECC
Confidence 998753 23333 467789999999986 799999999999999998
Q ss_pred CCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 048801 505 SRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT 584 (1715)
Q Consensus 505 t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~ 584 (1715)
+.. ...+..|...|.+++|+|++++|++++.||.|++|++.+++.+.. .
T Consensus 255 ~~~------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~ 303 (337)
T 1gxr_A 255 KPD------------------------------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-S 303 (337)
T ss_dssp SSC------------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-E
T ss_pred CCC------------------------------eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-e
Confidence 632 123456778899999999999999999999999999999988855 4
Q ss_pred cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 585 GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 585 gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
.|...|.+++|+| ++.+|++++.||.|++|++
T Consensus 304 ~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 304 KESSSVLSCDISV-DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ECSSCEEEEEECT-TSCEEEEEETTSCEEEEEE
T ss_pred cCCCcEEEEEECC-CCCEEEEecCCCeEEEEEE
Confidence 5888999999999 7788999999999999996
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=336.11 Aligned_cols=303 Identities=16% Similarity=0.165 Sum_probs=251.7
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF--CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD 316 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk--~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t 316 (1715)
+..|.++|++++|+|+|++||+|+.||.|+|||+.+++ .+..+.+|...|++++|+|++++|++++.||.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 55699999999999999999999999999999999987 8899999999999999999999999999999999999988
Q ss_pred CCceEE--EeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 317 GLPISV--LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 317 g~~l~~--L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
+..... +..|...|++++|+|++. +|++++.||.|++||+..+........ ...
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~v~i~d~~~~~~~~~~~~---------------------~~~ 139 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEK---KFAVGSGSRVISICYFEQENDWWVCKH---------------------IKK 139 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSS---EEEEEETTSSEEEEEEETTTTEEEEEE---------------------ECT
T ss_pred CeeeeeEEeecCCCceeEEEECCCCC---EEEEEeCCCEEEEEEecCCCcceeeee---------------------eec
Confidence 875444 367999999999999987 899999999999999987653111100 012
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCC---------CCCceeeeeecCCCCCeeEEEEccCcccccc
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDS---------EQPIHELDVLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~---------~~~~~~l~~l~gH~~~V~sLafspdg~as~~ 465 (1715)
.|...|.+++|+|++.+|++|+.||.|++||+........ ......+..+.+|...|.+++|+|++
T Consensus 140 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----- 214 (372)
T 1k8k_C 140 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG----- 214 (372)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-----
T ss_pred ccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC-----
Confidence 3466799999999999999999999999999753321110 11234567778999999999999986
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
..|++++.||.|++||+.+++ .+..+..|.
T Consensus 215 ---------------------~~l~~~~~d~~i~i~d~~~~~-----------------------------~~~~~~~~~ 244 (372)
T 1k8k_C 215 ---------------------SRVAWVSHDSTVCLADADKKM-----------------------------AVATLASET 244 (372)
T ss_dssp ---------------------SEEEEEETTTEEEEEEGGGTT-----------------------------EEEEEECSS
T ss_pred ---------------------CEEEEEeCCCEEEEEECCCCc-----------------------------eeEEEccCC
Confidence 799999999999999998643 233445677
Q ss_pred CCeeEEEeCCCCCEEEEEecCCeEEEEECCC--Cce--------------------------------E------EEE-e
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVD--GSL--------------------------------V------HSL-T 584 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DGtI~IWDl~s--g~~--------------------------------l------~tL-~ 584 (1715)
..|.+++|+|++.+|++| .|+.|++|++.+ +.. . ..+ .
T Consensus 245 ~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (372)
T 1k8k_C 245 LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS 323 (372)
T ss_dssp CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSS
T ss_pred CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccc
Confidence 789999999999988887 899999999987 421 0 223 4
Q ss_pred cCCCCeEEEEEccCCC---cEEEEEeCCCcEEEEECCCCc
Q 048801 585 GHSASSYVLDVHPFNP---RIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 585 gH~~~V~sLafSP~dg---~lLaSgs~DGtI~VWDl~tgk 621 (1715)
+|...|++++|++.++ .+|+||+.||.|+||++.+++
T Consensus 324 ~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 324 LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp SSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 8999999999887577 899999999999999987654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=331.76 Aligned_cols=351 Identities=14% Similarity=0.174 Sum_probs=250.0
Q ss_pred cccceeEEEEcCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEEEEec-------------CCCCCeEEEEECC
Q 048801 230 VQKMQNIKKLRGHRDAVYCAIFDR-SGRFVITGSDDRLVKIWSMETAFCLASCR-------------GHEGDITDLAVSS 295 (1715)
Q Consensus 230 ~~~~k~l~~L~GH~~~Vt~VafSp-DG~~LaTGS~DGtIrIWDl~tgk~l~tL~-------------gHs~~VtsLafSp 295 (1715)
+...+....+.+|.+.|++++|+| ++++||+|+.||.|+||++.++.....+. +|...|++++|+|
T Consensus 30 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 109 (408)
T 4a11_B 30 LELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYP 109 (408)
T ss_dssp EEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECT
T ss_pred cccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEcc
Confidence 344566778899999999999999 99999999999999999999876554432 6999999999999
Q ss_pred -CCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCC
Q 048801 296 -NNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPP 374 (1715)
Q Consensus 296 -Dg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~ 374 (1715)
++.+|++++.||.|++||+.++..+..+. +...+.+++|++.+....+|++++.||.|++||+.++..+..+
T Consensus 110 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~------ 182 (408)
T 4a11_B 110 HDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL------ 182 (408)
T ss_dssp TCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE------
T ss_pred CCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee------
Confidence 78899999999999999999999888887 7889999999997644448999999999999999887654433
Q ss_pred CCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCC-------CCCceeeeeecC
Q 048801 375 DAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDS-------EQPIHELDVLSG 446 (1715)
Q Consensus 375 ~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~-------~~~~~~l~~l~g 446 (1715)
..|...|.+++|+|++. +|++|+.||.|++||+.+...... ...........+
T Consensus 183 -------------------~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (408)
T 4a11_B 183 -------------------QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTA 243 (408)
T ss_dssp -------------------CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCS
T ss_pred -------------------cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccccc
Confidence 23566799999999998 589999999999999986531000 001111223367
Q ss_pred CCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCC
Q 048801 447 HENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPP 526 (1715)
Q Consensus 447 H~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~ 526 (1715)
|...|.+++|+|++ ..|++++.||.|++||+.++........
T Consensus 244 ~~~~v~~~~~~~~~--------------------------~~l~~~~~dg~i~vwd~~~~~~~~~~~~------------ 285 (408)
T 4a11_B 244 HNGKVNGLCFTSDG--------------------------LHLLTVGTDNRMRLWNSSNGENTLVNYG------------ 285 (408)
T ss_dssp CSSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEETTTCCBCCCCCC------------
T ss_pred ccCceeEEEEcCCC--------------------------CEEEEecCCCeEEEEECCCCccceeccc------------
Confidence 89999999999986 7999999999999999987553211100
Q ss_pred CCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEE
Q 048801 527 PLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSA 606 (1715)
Q Consensus 527 ~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSg 606 (1715)
.........+........+..+++++.++.|++||+.+++++..+.+|...|++++|+| ++.+|++|
T Consensus 286 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~ 352 (408)
T 4a11_B 286 ------------KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSG 352 (408)
T ss_dssp ------------CCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEE
T ss_pred ------------cccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEE
Confidence 00001111222233344556677788899999999999999999999999999999999 77899999
Q ss_pred eCCCcEEEEECCCCceEEEEEcccceEEEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 048801 607 GYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSP-DGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 607 s~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSP-DG~~LAsgs~DG~I~IWdl~ 660 (1715)
+.||.|+|||+.+++++........ ...+.+ +...+.+++.++.+.+|+..
T Consensus 353 ~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 353 SRDCNILAWVPSLYEPVPDDDETTT---KSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ETTSCEEEEEECC------------------------------------------
T ss_pred CCCCeEEEEeCCCCCccCCCCceEe---ccccccccceeecccCccCceeecCCc
Confidence 9999999999999988776553221 123333 33345567788999999864
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=319.88 Aligned_cols=294 Identities=19% Similarity=0.237 Sum_probs=252.2
Q ss_pred ccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeE
Q 048801 231 QKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIR 310 (1715)
Q Consensus 231 ~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIr 310 (1715)
...+.+++|.+|.+.|++++| +++.+|++|+.||.|+|||+.++.....+..|...|.+++|+|++.+|++|+.||.|+
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN 84 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence 356788999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCC---CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 311 VWRLPDG---LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 311 VWDl~tg---~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
+|++... ..+..+.+|...|.+++|. +. +|++++.||.|++|| .+.....+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~---~l~~~~~d~~i~~~d--~~~~~~~~------------------- 138 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DG---VVISGSWDKTAKVWK--EGSLVYNL------------------- 138 (313)
T ss_dssp EEETTCCTTSCC-CEECCCSSCEEEEEEE--TT---EEEEEETTSEEEEEE--TTEEEEEE-------------------
T ss_pred EEEeeecCCCCcccchhhcccCEEEEEec--CC---EEEEEeCCCCEEEEc--CCcEEEec-------------------
Confidence 9998754 6678889999999999993 34 899999999999999 33322222
Q ss_pred CCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecC-CCCCeeEEEEccCcccccc
Q 048801 388 GPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG-HENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g-H~~~V~sLafspdg~as~~ 465 (1715)
..|...|.+++|++ ++.+|++++.||.|++||.. .....+.. |...|.+++|+|++
T Consensus 139 ------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-----------~~~~~~~~~~~~~i~~~~~~~~~----- 196 (313)
T 3odt_A 139 ------QAHNASVWDAKVVSFSENKFLTASADKTIKLWQND-----------KVIKTFSGIHNDVVRHLAVVDDG----- 196 (313)
T ss_dssp ------ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-----------EEEEEECSSCSSCEEEEEEEETT-----
T ss_pred ------ccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC-----------ceEEEEeccCcccEEEEEEcCCC-----
Confidence 23466799999998 89999999999999999943 23455566 88999999999975
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
.+++++.||.|++||+++++ ....+..|.
T Consensus 197 ----------------------~~~~~~~dg~i~i~d~~~~~-----------------------------~~~~~~~~~ 225 (313)
T 3odt_A 197 ----------------------HFISCSNDGLIKLVDMHTGD-----------------------------VLRTYEGHE 225 (313)
T ss_dssp ----------------------EEEEEETTSEEEEEETTTCC-----------------------------EEEEEECCS
T ss_pred ----------------------eEEEccCCCeEEEEECCchh-----------------------------hhhhhhcCC
Confidence 49999999999999998643 233455688
Q ss_pred CCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI 625 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t 625 (1715)
..|++++|+|++ .|++++.||.|++||+.+++++..+..|...|.+++|+| ++. +++++.||.|++||+.+++.+..
T Consensus 226 ~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 226 SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS-NGD-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT-TSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc-CCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence 899999999999 688999999999999999999999999999999999999 555 55789999999999998876654
Q ss_pred EE
Q 048801 626 YE 627 (1715)
Q Consensus 626 l~ 627 (1715)
..
T Consensus 303 ~~ 304 (313)
T 3odt_A 303 DE 304 (313)
T ss_dssp --
T ss_pred hh
Confidence 43
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-33 Score=328.11 Aligned_cols=303 Identities=16% Similarity=0.201 Sum_probs=243.3
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEE-EEEeC---CCcEEEEeCCCCcEEEEe-cCCCCCeEEEEECCC---CCEEEEEeCCC
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFV-ITGSD---DRLVKIWSMETAFCLASC-RGHEGDITDLAVSSN---NTLVASASNDF 307 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~L-aTGS~---DGtIrIWDl~tgk~l~tL-~gHs~~VtsLafSpD---g~lLASGS~DG 307 (1715)
...+.+|...|++++|+|++..| ++|+. ||.|+||++.+++..... .+|...|++++|+|+ +.+|++|+.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 34568899999999999999655 56665 999999999998876543 379999999999998 69999999999
Q ss_pred eeEEEECCCCC-ceEEEeCCCCCeEEEEe------cCCCCcceEEEEecCCCcEEEEecCCCC-CcceecCCCCCCCccC
Q 048801 308 VIRVWRLPDGL-PISVLRGHTGAVTAIAF------SPRPSAIYQLLSSSDDGTCRIWDARYSQ-YSPRIYLPKPPDAITG 379 (1715)
Q Consensus 308 tIrVWDl~tg~-~l~~L~gH~~~VtsLaf------SPdg~~~~~LaSgS~DGtVrIWDl~tg~-~l~~i~~~~~~~~i~g 379 (1715)
.|++||+.++. ++..+.+|...|.+++| +|++. +|++++.||.|++||+.++. ....+...
T Consensus 91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~---~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-------- 159 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP---EIVTGSRDGTVKVWDPRQKDDPVANMEPV-------- 159 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC---EEEEEETTSCEEEECTTSCSSCSEEECCC--------
T ss_pred eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc---EEEEEeCCCeEEEEeCCCCCCcceecccc--------
Confidence 99999999988 89999999999999955 67776 89999999999999998876 33322110
Q ss_pred ccCCCCCCCCCCCCCCCCcceeEEE----EccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEE
Q 048801 380 KSNVPSNNGPSSSNGLQSHQILCCA----YNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455 (1715)
Q Consensus 380 ~~~~~~~~~~~~~~~~h~~~Vtsla----fSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLa 455 (1715)
.......|.+++ |++++.+|++|+.||.|++||+.++. ......|...|.+++
T Consensus 160 -------------~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----------~~~~~~~~~~v~~~~ 216 (357)
T 3i2n_A 160 -------------QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA----------LRWETNIKNGVCSLE 216 (357)
T ss_dssp -------------TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE----------EEEEEECSSCEEEEE
T ss_pred -------------CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc----------eeeecCCCCceEEEE
Confidence 011134588888 78899999999999999999998743 233467888999999
Q ss_pred Ecc---CcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCC
Q 048801 456 FSG---CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQP 532 (1715)
Q Consensus 456 fsp---dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~ 532 (1715)
|+| ++ ..|++++.||.|++||++++......
T Consensus 217 ~~~~~~~~--------------------------~~l~~~~~dg~i~i~d~~~~~~~~~~-------------------- 250 (357)
T 3i2n_A 217 FDRKDISM--------------------------NKLVATSLEGKFHVFDMRTQHPTKGF-------------------- 250 (357)
T ss_dssp ESCSSSSC--------------------------CEEEEEESTTEEEEEEEEEEETTTEE--------------------
T ss_pred cCCCCCCC--------------------------CEEEEECCCCeEEEEeCcCCCcccce--------------------
Confidence 998 54 78999999999999999864422111
Q ss_pred CCCCCcccccCCCCCeeEEEeCCCCC-EEEEEecCCeEEEEECCCC-------------------ceEEEEecCCCCeEE
Q 048801 533 PRGGPRQRLLPTPRGVNMIVWSLDNR-FVLAAIMDCRICVWNAVDG-------------------SLVHSLTGHSASSYV 592 (1715)
Q Consensus 533 ~~g~~~~~l~~h~~~VtslafSPDG~-~LaTgs~DGtI~IWDl~sg-------------------~~l~tL~gH~~~V~s 592 (1715)
.......|...|++++|+|++. +|++|+.||.|+|||+.++ +.+..+.+|...|++
T Consensus 251 ----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~ 326 (357)
T 3i2n_A 251 ----ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS 326 (357)
T ss_dssp ----EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE
T ss_pred ----eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeE
Confidence 0012336888999999999999 8999999999999999754 467788999999999
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECCCCce
Q 048801 593 LDVHPFNPRIAMSAGYDGRTIVWDIWEGTP 622 (1715)
Q Consensus 593 LafSP~dg~lLaSgs~DGtI~VWDl~tgk~ 622 (1715)
++|+|++..++++++.||.|+|||+.+.+.
T Consensus 327 ~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 327 LDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred EEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 999995555555899999999999987654
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=333.58 Aligned_cols=296 Identities=16% Similarity=0.141 Sum_probs=251.5
Q ss_pred EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC------ceEEEeCCCCCeEEEEecCC----C---Ccce
Q 048801 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL------PISVLRGHTGAVTAIAFSPR----P---SAIY 343 (1715)
Q Consensus 277 ~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~------~l~~L~gH~~~VtsLafSPd----g---~~~~ 343 (1715)
....+.+|.+.|++++|+| .+|++|+.||.|+||++.++. .+..+.+|...|++++|+|+ + .
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~--- 82 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC--- 82 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE---
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc---
Confidence 4566789999999999998 799999999999999999988 78899999999999999998 7 6
Q ss_pred EEEEecCCCcEEEEecCCCCC-----cceecCCCCCCCccCccCCCCCCCCCCCCCCC-----CcceeEEEEc----cCC
Q 048801 344 QLLSSSDDGTCRIWDARYSQY-----SPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ-----SHQILCCAYN----ANG 409 (1715)
Q Consensus 344 ~LaSgS~DGtVrIWDl~tg~~-----l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h-----~~~VtslafS----pdG 409 (1715)
+|++++.||.|++||+.++.. ...+ ..| ...|.+++|+ |++
T Consensus 83 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~v~~~~~~~~~~~~~ 137 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITREDETKKVIFEKL-------------------------DLLDSDMKKHSFWALKWGASNDRLL 137 (397)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCEEEEEE-------------------------CCSCTTGGGSCEEEEEEECCC----
T ss_pred EEEEEcCCCCEEEEEccCCcccccccceee-------------------------cccccccCCCcEEEEEEeeccCCCC
Confidence 899999999999999987764 2222 112 4679999999 999
Q ss_pred Ce-EEEecCCCeEEEEeCCC------CCccCCCCCceeeeee-------cCCCCCeeEEEEccCcccccccccccccccc
Q 048801 410 TV-FVTGSSDTFARVWSACK------SSVEDSEQPIHELDVL-------SGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 410 ~~-LatGs~DG~IrVWDl~t------~~~~~~~~~~~~l~~l-------~gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
.+ |++|+.||.|++||+.+ +.... ......+ ..|...|.+++|+|+
T Consensus 138 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------- 197 (397)
T 1sq9_A 138 SHRLVATDVKGTTYIWKFHPFADESNSLTLN----WSPTLELQGTVESPMTPSQFATSVDISER---------------- 197 (397)
T ss_dssp CEEEEEEETTSCEEEEEEESSSSHHHHTTTC----CCCEEEEEEEECCSSSSCCCCCEEEECTT----------------
T ss_pred ceEEEEEeCCCcEEEEeCCccccccccceee----ccCcceeeeeeccccCCCCCceEEEECCC----------------
Confidence 99 99999999999999986 33211 0111134 458889999999986
Q ss_pred cccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccC---C---CCCee
Q 048801 476 VPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLP---T---PRGVN 549 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~---h---~~~Vt 549 (1715)
. .|++++.||.|++||+++++. ...+.. | ...|.
T Consensus 198 ----------~-~l~~~~~dg~i~i~d~~~~~~-----------------------------~~~~~~~~~h~~~~~~i~ 237 (397)
T 1sq9_A 198 ----------G-LIATGFNNGTVQISELSTLRP-----------------------------LYNFESQHSMINNSNSIR 237 (397)
T ss_dssp ----------S-EEEEECTTSEEEEEETTTTEE-----------------------------EEEEECCC---CCCCCEE
T ss_pred ----------c-eEEEEeCCCcEEEEECCCCce-----------------------------eEEEeccccccccCCccc
Confidence 3 899999999999999986432 122333 6 77899
Q ss_pred EEEeCCCCCEEEEEecC---CeEEEEECCCCceEEEEec-------------CCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 048801 550 MIVWSLDNRFVLAAIMD---CRICVWNAVDGSLVHSLTG-------------HSASSYVLDVHPFNPRIAMSAGYDGRTI 613 (1715)
Q Consensus 550 slafSPDG~~LaTgs~D---GtI~IWDl~sg~~l~tL~g-------------H~~~V~sLafSP~dg~lLaSgs~DGtI~ 613 (1715)
+++|+|++.+|++++.| +.|++||+.+++.+..+.+ |...|.+++|+| ++.+|++++.||.|+
T Consensus 238 ~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 316 (397)
T 1sq9_A 238 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLR 316 (397)
T ss_dssp EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEE
T ss_pred eEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEE
Confidence 99999999999999999 9999999999999999998 999999999999 778999999999999
Q ss_pred EEECCCCceEEEEE------cc---------------cceEEEEEEcCCC----------CEEEEEeCCCeEEEEECCCC
Q 048801 614 VWDIWEGTPIRIYE------IG---------------RFKLVDGKFSPDG----------TSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 614 VWDl~tgk~l~tl~------~h---------------~~~V~svafSPDG----------~~LAsgs~DG~I~IWdl~tG 662 (1715)
|||+.+++++..+. .| ...|.+++|+|+| .+|++++.||.|+||++.+|
T Consensus 317 iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 317 FWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred EEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 99999999999999 77 8899999999999 79999999999999999877
Q ss_pred c
Q 048801 663 E 663 (1715)
Q Consensus 663 e 663 (1715)
+
T Consensus 397 ~ 397 (397)
T 1sq9_A 397 K 397 (397)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-32 Score=317.02 Aligned_cols=293 Identities=17% Similarity=0.242 Sum_probs=253.5
Q ss_pred CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcE
Q 048801 275 AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtV 354 (1715)
.+.+.++.+|.+.|++++| +++.+|++|+.||.|+|||+.++.....+..|...|.+++|+|++. +|++++.||.|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i 83 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKE---LLLFGGKDTMI 83 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTT---EEEEEETTSCE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCC---EEEEecCCCeE
Confidence 3678899999999999999 9999999999999999999999999999999999999999999988 89999999999
Q ss_pred EEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCC
Q 048801 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDS 434 (1715)
Q Consensus 355 rIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~ 434 (1715)
++|++....... .......|...|.+++| ++.+|++|+.||.|++||.
T Consensus 84 ~~~~~~~~~~~~----------------------~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~-------- 131 (313)
T 3odt_A 84 NGVPLFATSGED----------------------PLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE-------- 131 (313)
T ss_dssp EEEETTCCTTSC----------------------C-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--------
T ss_pred EEEEeeecCCCC----------------------cccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--------
Confidence 999987643211 11122346778999999 6789999999999999993
Q ss_pred CCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccc
Q 048801 435 EQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGR 514 (1715)
Q Consensus 435 ~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~ 514 (1715)
...+..+..|...|.++.|.+.. ...|++++.||.|++||...
T Consensus 132 ---~~~~~~~~~~~~~v~~~~~~~~~-------------------------~~~l~~~~~d~~i~i~d~~~--------- 174 (313)
T 3odt_A 132 ---GSLVYNLQAHNASVWDAKVVSFS-------------------------ENKFLTASADKTIKLWQNDK--------- 174 (313)
T ss_dssp ---TEEEEEEECCSSCEEEEEEEETT-------------------------TTEEEEEETTSCEEEEETTE---------
T ss_pred ---CcEEEecccCCCceeEEEEccCC-------------------------CCEEEEEECCCCEEEEecCc---------
Confidence 24567788899999999998822 37999999999999999432
Q ss_pred ccccccccCCCCCCCCCCCCCCCcccccC-CCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEE
Q 048801 515 WTRAYHLKVPPPPLPPQPPRGGPRQRLLP-TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVL 593 (1715)
Q Consensus 515 ~~~~~~l~~~~~~~~~~~~~g~~~~~l~~-h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sL 593 (1715)
....+.. +...|.+++|+|++. |++++.||.|++||+.+++.+..+.+|...|+++
T Consensus 175 ----------------------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~ 231 (313)
T 3odt_A 175 ----------------------VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCI 231 (313)
T ss_dssp ----------------------EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred ----------------------eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEE
Confidence 1112223 677899999999998 8999999999999999999999999999999999
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 594 DVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 594 afSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
+|+| ++ .|++++.||.|++||+.+++++..+..|...|.+++|+|+|+ |++++.||.|++|++.+++...
T Consensus 232 ~~~~-~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 232 KLLP-NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp EECT-TS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred EEec-CC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 9999 44 477999999999999999999999999999999999999998 6679999999999998876543
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=321.47 Aligned_cols=279 Identities=15% Similarity=0.183 Sum_probs=224.1
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEE
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVr 355 (1715)
...+++.+|.+.|++++|+|++.+|++|+.||+|+|||+.++..+..+..|...|.+++|+|++. +|++|+.|++|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~s~s~d~~i~ 80 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN---WIIVGSDDFRIR 80 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGT---EEEEEETTSEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCC---EEEEECCCCEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999988 899999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE 435 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~ 435 (1715)
+||+.+++.+..+ ..|...|.+++|+|++.+|++|+.||.|++||+.++.
T Consensus 81 vwd~~~~~~~~~~-------------------------~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~----- 130 (304)
T 2ynn_A 81 VFNYNTGEKVVDF-------------------------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----- 130 (304)
T ss_dssp EEETTTCCEEEEE-------------------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-----
T ss_pred EEECCCCcEEEEE-------------------------eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-----
Confidence 9999988755443 2356779999999999999999999999999986531
Q ss_pred CCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccc
Q 048801 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW 515 (1715)
Q Consensus 436 ~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~ 515 (1715)
.....+.+|...|.+++|+|.
T Consensus 131 ---~~~~~~~~h~~~v~~v~~~p~-------------------------------------------------------- 151 (304)
T 2ynn_A 131 ---ALEQTFEGHEHFVMCVAFNPK-------------------------------------------------------- 151 (304)
T ss_dssp ---EEEEEECCCCSCEEEEEECTT--------------------------------------------------------
T ss_pred ---chhhhhcccCCcEEEEEECCC--------------------------------------------------------
Confidence 223344445544444444442
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe-cCCCCeEEEE
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT-GHSASSYVLD 594 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~-gH~~~V~sLa 594 (1715)
++.+|++|+.|++|+|||+.++.....+. +|...|..+.
T Consensus 152 ----------------------------------------~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~ 191 (304)
T 2ynn_A 152 ----------------------------------------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191 (304)
T ss_dssp ----------------------------------------CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEE
T ss_pred ----------------------------------------CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEE
Confidence 34555566666666666655554444443 5667889999
Q ss_pred EccC-CCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccc----
Q 048801 595 VHPF-NPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAK---- 669 (1715)
Q Consensus 595 fSP~-dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~~---- 669 (1715)
|+|. ++.+|++|+.||+|+|||+.+++++..+.+|...|.+++|+|++.+|++|+.||.|+|||+.+++..+...
T Consensus 192 ~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~ 271 (304)
T 2ynn_A 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE 271 (304)
T ss_dssp ECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSS
T ss_pred EEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCc
Confidence 9874 55799999999999999999999999999999999999999999999999999999999999987764332
Q ss_pred --cceeecCCCcc--EEEcCC
Q 048801 670 --YDQFFLGDYRP--LIRDSL 686 (1715)
Q Consensus 670 --~~~~fs~D~r~--L~~d~~ 686 (1715)
+...|+|++.. |+...+
T Consensus 272 ~~~~~~~~~~~~~~~~asg~~ 292 (304)
T 2ynn_A 272 RSWCIATHPTGRKNYIASGFD 292 (304)
T ss_dssp SEEEEEECTTCGGGCEEEEET
T ss_pred cEEEEEECCCCCceEEEEecC
Confidence 33456666642 444433
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-33 Score=335.29 Aligned_cols=302 Identities=19% Similarity=0.163 Sum_probs=248.0
Q ss_pred EEeCCCCcEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCeeEEEECCCCCceEEEe--CCCCCeEEEEecC-CCCcceE
Q 048801 269 IWSMETAFCLASCRGHEGDITDLAVSSNN-TLVASASNDFVIRVWRLPDGLPISVLR--GHTGAVTAIAFSP-RPSAIYQ 344 (1715)
Q Consensus 269 IWDl~tgk~l~tL~gHs~~VtsLafSpDg-~lLASGS~DGtIrVWDl~tg~~l~~L~--gH~~~VtsLafSP-dg~~~~~ 344 (1715)
+|++........+.+|...|++++|+|++ ++||+|+.||.|+|||+.++.....+. +|...|++++|+| ++. +
T Consensus 57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~---~ 133 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTN---Q 133 (383)
T ss_dssp HHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEE---E
T ss_pred cccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCC---E
Confidence 44556677788899999999999999999 999999999999999999998887776 6999999999999 444 8
Q ss_pred EEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEE
Q 048801 345 LLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVW 424 (1715)
Q Consensus 345 LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVW 424 (1715)
|++++.|+.|++||+.+.. ...+.. ...+...|.+++|+|++.+|++|+.||.|++|
T Consensus 134 l~s~~~d~~i~iwd~~~~~-~~~~~~----------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 190 (383)
T 3ei3_B 134 LFVSSIRGATTLRDFSGSV-IQVFAK----------------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLL 190 (383)
T ss_dssp EEEEETTTEEEEEETTSCE-EEEEEC----------------------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred EEEEeCCCEEEEEECCCCc-eEEEec----------------------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEE
Confidence 9999999999999998532 222211 11234669999999999999999999999999
Q ss_pred eCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecC
Q 048801 425 SACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPR 504 (1715)
Q Consensus 425 Dl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~ 504 (1715)
|+.. ..+..+.+|...|.+++|+|++ ...|++++.||.|++||++
T Consensus 191 d~~~----------~~~~~~~~h~~~v~~~~~~~~~-------------------------~~~l~s~~~d~~i~iwd~~ 235 (383)
T 3ei3_B 191 GLDG----------HEIFKEKLHKAKVTHAEFNPRC-------------------------DWLMATSSVDATVKLWDLR 235 (383)
T ss_dssp ETTS----------CEEEEEECSSSCEEEEEECSSC-------------------------TTEEEEEETTSEEEEEEGG
T ss_pred ECCC----------CEEEEeccCCCcEEEEEECCCC-------------------------CCEEEEEeCCCEEEEEeCC
Confidence 9942 3467788999999999999986 2389999999999999998
Q ss_pred CCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEEEecCCeEEEEECCCCceEEEE
Q 048801 505 SRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAVDGSLVHSL 583 (1715)
Q Consensus 505 t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaTgs~DGtI~IWDl~sg~~l~tL 583 (1715)
+.... ........|...|.+++|+| ++.+|++++.|+.|+|||+.+++.+..+
T Consensus 236 ~~~~~--------------------------~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 289 (383)
T 3ei3_B 236 NIKDK--------------------------NSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQI 289 (383)
T ss_dssp GCCST--------------------------TCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEE
T ss_pred CCCcc--------------------------cceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccc
Confidence 63211 11122235788999999999 9999999999999999999999888877
Q ss_pred ecCC-----------------CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcc--cceEEEEEEcCCCCE
Q 048801 584 TGHS-----------------ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG--RFKLVDGKFSPDGTS 644 (1715)
Q Consensus 584 ~gH~-----------------~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h--~~~V~svafSPDG~~ 644 (1715)
.+|. +.+..++|+| ++.+ +|+.||.|+|||+.+++++..+.++ ...+..++|+|+|++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~-dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~ 366 (383)
T 3ei3_B 290 IIHPHRQFQHLTPIKATWHPMYDLIVAGRYP-DDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDV 366 (383)
T ss_dssp EECCBCCCTTSCCCCCEECSSSSEEEEECBC-CTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSE
T ss_pred ccccccccccccceEEeccCCCCceEEEecC-Cccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccE
Confidence 7653 2344466666 3334 6779999999999999999999864 455667799999999
Q ss_pred EEEEeCCCeEEEEECCC
Q 048801 645 IVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 645 LAsgs~DG~I~IWdl~t 661 (1715)
|++++ ||.|+||++.+
T Consensus 367 l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 367 LASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEEE-TTEEEEEECC-
T ss_pred EEEec-CCcEEEEecCC
Confidence 99997 89999999864
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-33 Score=328.59 Aligned_cols=312 Identities=17% Similarity=0.240 Sum_probs=249.8
Q ss_pred EEcCCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEeCCCCcEEEEecC-----CCCCeEEEEECCC----CCEEEEEe
Q 048801 238 KLRGHRDAVYCAIFDRS----GRFVITGSDDRLVKIWSMETAFCLASCRG-----HEGDITDLAVSSN----NTLVASAS 304 (1715)
Q Consensus 238 ~L~GH~~~Vt~VafSpD----G~~LaTGS~DGtIrIWDl~tgk~l~tL~g-----Hs~~VtsLafSpD----g~lLASGS 304 (1715)
.+.+|.+.|++++|+|+ ...+++++.++.|+||++.++..+..+.. |...|++++|+|+ +.+|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34599999999999984 45566666677999999998887777664 5578999999998 67999999
Q ss_pred CCCeeEEEECCCCCceEEEeCCCCCeEEEEecC-CCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCC
Q 048801 305 NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP-RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383 (1715)
Q Consensus 305 ~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSP-dg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~ 383 (1715)
.||.|+|||+.+++.+..+.+|...|++++|+| ++. +|++++.||.|++||+.+++....+..
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~------------- 156 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN---LLLSVSKDHALRLWNIQTDTLVAIFGG------------- 156 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT---EEEEEETTSCEEEEETTTTEEEEEECS-------------
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCC---EEEEEeCCCeEEEEEeecCeEEEEecc-------------
Confidence 999999999999999999999999999999999 666 899999999999999988765544311
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCC-------------------CCceeeeee
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE-------------------QPIHELDVL 444 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~-------------------~~~~~l~~l 444 (1715)
...|...|.+++|+|++.+|++|+.||.|++||+.+++..... .........
T Consensus 157 ---------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 157 ---------VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp ---------TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred ---------cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence 1235677999999999999999999999999999865321000 000112334
Q ss_pred cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCC
Q 048801 445 SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVP 524 (1715)
Q Consensus 445 ~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~ 524 (1715)
.+|...|.+++|++ +.|++++.||.|++||+.+........
T Consensus 228 ~~~~~~v~~~~~~~----------------------------~~l~~~~~d~~i~~wd~~~~~~~~~~~----------- 268 (366)
T 3k26_A 228 DIHRNYVDCVRWLG----------------------------DLILSKSCENAIVCWKPGKMEDDIDKI----------- 268 (366)
T ss_dssp SSCSSCCCEEEEET----------------------------TEEEEECSSSEEEEEEESSTTCCGGGC-----------
T ss_pred cCCcceEEEEEEcC----------------------------CEEEEEecCCEEEEEeCCCcccccccc-----------
Confidence 45889999999983 689999999999999998754211110
Q ss_pred CCCCCCCCCCCCCcccccCCCCCeeEEEeCCC--CCEEEEEecCCeEEEEECCCCc----eEEEEecC--CCCeEEEEEc
Q 048801 525 PPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD--NRFVLAAIMDCRICVWNAVDGS----LVHSLTGH--SASSYVLDVH 596 (1715)
Q Consensus 525 ~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD--G~~LaTgs~DGtI~IWDl~sg~----~l~tL~gH--~~~V~sLafS 596 (1715)
............+..|...|.+++|+|+ +++|++|+.||.|+|||+.+++ ....+.+| ...|++++|+
T Consensus 269 ----~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 344 (366)
T 3k26_A 269 ----KPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFS 344 (366)
T ss_dssp ----CTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEEC
T ss_pred ----ccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeC
Confidence 0001111234556678889999999999 9999999999999999999876 44578887 7999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEECC
Q 048801 597 PFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 597 P~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
| ++.+|++|+.||.|+|||+.
T Consensus 345 ~-~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 345 R-DSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp T-TSSEEEEEETTSEEEEEEC-
T ss_pred C-CCCeEEEEeCCCEEEEEEec
Confidence 9 78899999999999999985
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=330.47 Aligned_cols=311 Identities=13% Similarity=0.123 Sum_probs=248.4
Q ss_pred ccceeEEEEcCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCcEEEEec--CCCCCeEEEEECC-CCCEEEEEeCC
Q 048801 231 QKMQNIKKLRGHRDAVYCAIFDRSG-RFVITGSDDRLVKIWSMETAFCLASCR--GHEGDITDLAVSS-NNTLVASASND 306 (1715)
Q Consensus 231 ~~~k~l~~L~GH~~~Vt~VafSpDG-~~LaTGS~DGtIrIWDl~tgk~l~tL~--gHs~~VtsLafSp-Dg~lLASGS~D 306 (1715)
...+....+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.+++....+. +|...|.+++|+| ++.+|++++.|
T Consensus 61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 4567788999999999999999999 999999999999999999888877775 6999999999999 78999999999
Q ss_pred CeeEEEECCCCCceEEEeCC---CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCC
Q 048801 307 FVIRVWRLPDGLPISVLRGH---TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH---~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~ 383 (1715)
+.|++||+.+ ..+..+..| ...|.+++|+|++. +|++++.||.|++||+. ++.+..+
T Consensus 141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~i~d~~-~~~~~~~--------------- 200 (383)
T 3ei3_B 141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ---MLATGDSTGRLLLLGLD-GHEIFKE--------------- 200 (383)
T ss_dssp TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT---EEEEEETTSEEEEEETT-SCEEEEE---------------
T ss_pred CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC---EEEEECCCCCEEEEECC-CCEEEEe---------------
Confidence 9999999985 556666544 48899999999988 89999999999999984 3332222
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEcc-Ccc
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSG-CAV 461 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafsp-dg~ 461 (1715)
..|...|.+++|+|++. +|++|+.|+.|++||+.+... ....+..+ +|...|.+++|+| ++
T Consensus 201 ----------~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~-~~~~~v~~~~~s~~~~- 263 (383)
T 3ei3_B 201 ----------KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD-----KNSYIAEM-PHEKPVNAAYFNPTDS- 263 (383)
T ss_dssp ----------ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS-----TTCEEEEE-ECSSCEEEEEECTTTS-
T ss_pred ----------ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc-----ccceEEEe-cCCCceEEEEEcCCCC-
Confidence 23567799999999998 999999999999999986421 12233444 6999999999999 76
Q ss_pred cccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL 541 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l 541 (1715)
..|++++.||.|++||+.++.....+........ .....+...
T Consensus 264 -------------------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 306 (383)
T 3ei3_B 264 -------------------------TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF------------QHLTPIKAT 306 (383)
T ss_dssp -------------------------CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC------------TTSCCCCCE
T ss_pred -------------------------CEEEEEcCCCcEEEEECCCCcccccccccccccc------------ccccceEEe
Confidence 7999999999999999998664433211000000 000011111
Q ss_pred cCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec--CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC
Q 048801 542 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG--HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 542 ~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g--H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t 619 (1715)
......+..++|+|+|++ +|+.|+.|+|||+.+++++..+.+ |...+.+++|+| ++.+|++|+ ||.|+|||+.+
T Consensus 307 ~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 307 WHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred ccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence 122345677888898888 888999999999999999999987 567788889999 778888987 99999999864
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-34 Score=361.37 Aligned_cols=312 Identities=14% Similarity=0.109 Sum_probs=227.4
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCcEE----EEecCCCCCeEEEEECCC------CCEEEEEeCCCeeEEEECCCCCc--
Q 048801 252 DRSGRFVITGSDDRLVKIWSMETAFCL----ASCRGHEGDITDLAVSSN------NTLVASASNDFVIRVWRLPDGLP-- 319 (1715)
Q Consensus 252 SpDG~~LaTGS~DGtIrIWDl~tgk~l----~tL~gHs~~VtsLafSpD------g~lLASGS~DGtIrVWDl~tg~~-- 319 (1715)
+|++.+|++|+.|++|+||++.++++. .++.+|.+.|.+|+|+|+ +.+||+|+.||+|+|||+.++..
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 455556667778999999999887642 456778899999999996 57999999999999999987642
Q ss_pred ---------eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCC
Q 048801 320 ---------ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPS 390 (1715)
Q Consensus 320 ---------l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~ 390 (1715)
...+.+|...|++++|++++ .|++|+.||+|++||+.++.....
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~~----~lasgs~DgtV~lWD~~~~~~~~~----------------------- 302 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSPT----TVVCGFKNGFVAEFDLTDPEVPSF----------------------- 302 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSSS----EEEEEETTSEEEEEETTBCSSCSE-----------------------
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCCC----eEEEEeCCCEEEEEECCCCCCceE-----------------------
Confidence 35788999999999999863 799999999999999986532111
Q ss_pred CCCCCCCcceeEE--EEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC--CeeEEEEccCcccccc
Q 048801 391 SSNGLQSHQILCC--AYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN--DVNYVQFSGCAVASRS 465 (1715)
Q Consensus 391 ~~~~~h~~~Vtsl--afSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~--~V~sLafspdg~as~~ 465 (1715)
....|...|.++ +|+++| .+||+|+.|++|+|||+++++ .+..+.+|.. .|.+++|+|++
T Consensus 303 -~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~---------~~~~~~~~~~~~~v~~v~fsp~~----- 367 (524)
T 2j04_B 303 -YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA---------TTKTTVSRFRGSNLVPVVYCPQI----- 367 (524)
T ss_dssp -EEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH---------HHCEEEEECSCCSCCCEEEETTT-----
T ss_pred -EeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC---------cccccccccccCcccceEeCCCc-----
Confidence 123467789999 578888 899999999999999997642 2344555543 58899999986
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
..|++++.|++|++||++++. ....+.+|.
T Consensus 368 ---------------------~~l~s~~~d~tv~lwd~~~~~-----------------------------~~~~l~gH~ 397 (524)
T 2j04_B 368 ---------------------YSYIYSDGASSLRAVPSRAAF-----------------------------AVHPLVSRE 397 (524)
T ss_dssp ---------------------TEEEEECSSSEEEEEETTCTT-----------------------------CCEEEEECS
T ss_pred ---------------------CeEEEeCCCCcEEEEECcccc-----------------------------cceeeecCC
Confidence 679999999999999998632 233456788
Q ss_pred CCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec-----CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-C
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG-----HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW-E 619 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g-----H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~-t 619 (1715)
..|++|+|+|+|++|++|+.|++|+|||+..+ .+..+.. +...|++++|+|++ .++ ... | .+.+|+.. +
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g-~~~-~~~-~-~~~~~~~~~~ 472 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKD-DKY-RID-S-SYEVYPLTVN 472 (524)
T ss_dssp SCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSS-CEE-EEC-C-CCCCCC----
T ss_pred CceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCC-CeE-Ecc-C-CceecccccC
Confidence 99999999999999999999999999998654 2222211 12247899999944 443 222 2 34444443 5
Q ss_pred CceEEEEEcccceEEEEEEcCCCC---EEEEEeCCCeEEEEECC
Q 048801 620 GTPIRIYEIGRFKLVDGKFSPDGT---SIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 620 gk~l~tl~~h~~~V~svafSPDG~---~LAsgs~DG~I~IWdl~ 660 (1715)
|.++..+.+|...|.+|+|+|++. +||+|+.+|.|+||++.
T Consensus 473 g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 473 DVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp ---------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred CcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 778888999999999999999964 99999999999999985
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=340.44 Aligned_cols=306 Identities=15% Similarity=0.231 Sum_probs=248.2
Q ss_pred CCeEEEEECCCCC-EEEEE----------eCCCeeEEEECCCCC---ceEEEeCCCCCeEEEEecCCCCcceEEEEecCC
Q 048801 286 GDITDLAVSSNNT-LVASA----------SNDFVIRVWRLPDGL---PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD 351 (1715)
Q Consensus 286 ~~VtsLafSpDg~-lLASG----------S~DGtIrVWDl~tg~---~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D 351 (1715)
..|.+++|+|++. +||+| +.|+.|+|||+.++. ++..+ .|...|++++|+|++. +|++++.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~---~l~~~~~d 88 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNK---IIAGALDN 88 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSS---CEEEEESS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCC---eEEEEccC
Confidence 3578899999987 99999 889999999999875 34444 5889999999999987 89999999
Q ss_pred CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC-CCeEEEecCCCeEEEEeCCCCC
Q 048801 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN-GTVFVTGSSDTFARVWSACKSS 430 (1715)
Q Consensus 352 GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd-G~~LatGs~DG~IrVWDl~t~~ 430 (1715)
|.|++||+....... ........|...|.+++|+|+ +.+|++|+.||.|++||+.+..
T Consensus 89 g~v~vw~~~~~~~~~---------------------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 147 (416)
T 2pm9_A 89 GSLELYSTNEANNAI---------------------NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCT 147 (416)
T ss_dssp SCEEEECCSSTTSCC---------------------CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTS
T ss_pred CeEEEeecccccccc---------------------cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCc
Confidence 999999997621100 001112346778999999998 8999999999999999998764
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
..........+..+..|...|.+++|+|++ ...|++++.||.|++||+.+++...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------------~~~l~~~~~dg~v~iwd~~~~~~~~ 202 (416)
T 2pm9_A 148 ESPSNYTPLTPGQSMSSVDEVISLAWNQSL-------------------------AHVFASAGSSNFASIWDLKAKKEVI 202 (416)
T ss_dssp SCTTTCCCBCCCCSCCSSCCCCEEEECSSC-------------------------TTEEEEESSSSCEEEEETTTTEEEE
T ss_pred cccccccccccccccCCCCCeeEEEeCCCC-------------------------CcEEEEEcCCCCEEEEECCCCCcce
Confidence 110000111223457899999999999974 3789999999999999998754222
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC-CEEEEEecCC---eEEEEECCCC-ceEEEEe-
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN-RFVLAAIMDC---RICVWNAVDG-SLVHSLT- 584 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG-~~LaTgs~DG---tI~IWDl~sg-~~l~tL~- 584 (1715)
.+. . .....+|...|.+++|+|++ .+|++++.|+ .|++||+.++ .++..+.
T Consensus 203 ~~~---------~--------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~ 259 (416)
T 2pm9_A 203 HLS---------Y--------------TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQ 259 (416)
T ss_dssp EEC---------C--------------CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCS
T ss_pred EEe---------c--------------cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeec
Confidence 110 0 00112347789999999997 6899999998 9999999987 6777888
Q ss_pred cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc
Q 048801 585 GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDG-TSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 585 gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG-~~LAsgs~DG~I~IWdl~tGe 663 (1715)
+|...|++++|+|.++.+|++++.||.|+|||+.+++++..+..|...|.+++|+|++ .+|++++.||.|+||++.++.
T Consensus 260 ~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 260 GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 9999999999999778899999999999999999999999999999999999999999 899999999999999998775
Q ss_pred c
Q 048801 664 S 664 (1715)
Q Consensus 664 ~ 664 (1715)
.
T Consensus 340 ~ 340 (416)
T 2pm9_A 340 N 340 (416)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-33 Score=340.09 Aligned_cols=303 Identities=13% Similarity=0.169 Sum_probs=251.2
Q ss_pred ccceeEEEE-cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCC---Cc---EEEEecCCCCCeEEEEECCCCCEEEE
Q 048801 231 QKMQNIKKL-RGHRDAVYCAIFDR-SGRFVITGSDDRLVKIWSMET---AF---CLASCRGHEGDITDLAVSSNNTLVAS 302 (1715)
Q Consensus 231 ~~~k~l~~L-~GH~~~Vt~VafSp-DG~~LaTGS~DGtIrIWDl~t---gk---~l~tL~gHs~~VtsLafSpDg~lLAS 302 (1715)
...+.+..| .+|.+.|++++|+| ++.+||+|+.||+|+|||+.+ +. ....+ +|...|++++|+|++.+|++
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s 128 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAV 128 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEE
Confidence 346788889 99999999999999 999999999999999999876 43 23333 49999999999999999999
Q ss_pred EeCCCeeEEEECC---CCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccC
Q 048801 303 ASNDFVIRVWRLP---DGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITG 379 (1715)
Q Consensus 303 GS~DGtIrVWDl~---tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g 379 (1715)
|+.||+|+|||+. ++..+..+.+| .|..+.|+|++.
T Consensus 129 ~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~~--------------------------------------- 167 (437)
T 3gre_A 129 SSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFGK--------------------------------------- 167 (437)
T ss_dssp EETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGSS---------------------------------------
T ss_pred EeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCccc---------------------------------------
Confidence 9999999999994 77777777666 677777776421
Q ss_pred ccCCCCCCCCCCCCCCCCcceeEEE--EccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecC--CCCCeeEEE
Q 048801 380 KSNVPSNNGPSSSNGLQSHQILCCA--YNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG--HENDVNYVQ 455 (1715)
Q Consensus 380 ~~~~~~~~~~~~~~~~h~~~Vtsla--fSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g--H~~~V~sLa 455 (1715)
...+.++. +++++.+|++|+.||.|++||+.+++ .+..+.+ |...|.+++
T Consensus 168 -----------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~h~~~v~~~~ 221 (437)
T 3gre_A 168 -----------------NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE---------RLQIIENSPRHGAVSSIC 221 (437)
T ss_dssp -----------------CCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC---------EEEEEECCGGGCCEEEEE
T ss_pred -----------------ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe---------eeEEEccCCCCCceEEEE
Confidence 11244455 67899999999999999999998743 4566666 889999999
Q ss_pred EccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCC
Q 048801 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRG 535 (1715)
Q Consensus 456 fspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 535 (1715)
|+|++ ..|++|+.||.|++||++++...
T Consensus 222 ~s~~~--------------------------~~l~s~~~dg~i~iwd~~~~~~~-------------------------- 249 (437)
T 3gre_A 222 IDEEC--------------------------CVLILGTTRGIIDIWDIRFNVLI-------------------------- 249 (437)
T ss_dssp ECTTS--------------------------CEEEEEETTSCEEEEETTTTEEE--------------------------
T ss_pred ECCCC--------------------------CEEEEEcCCCeEEEEEcCCccEE--------------------------
Confidence 99986 79999999999999999864321
Q ss_pred CCcccc-cCCCCCeeEEEeC----CCCCEEEEEecCCeEEEEECCCCceEEEEecC------------------------
Q 048801 536 GPRQRL-LPTPRGVNMIVWS----LDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH------------------------ 586 (1715)
Q Consensus 536 ~~~~~l-~~h~~~VtslafS----PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH------------------------ 586 (1715)
..+ ..|...|++++|+ +++.+|++|+.||.|+|||+.+++++..+.+|
T Consensus 250 ---~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 326 (437)
T 3gre_A 250 ---RSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGI 326 (437)
T ss_dssp ---EEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCC
T ss_pred ---EEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccc
Confidence 122 2456689999554 57889999999999999999999998888754
Q ss_pred --CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEc------------------------------------
Q 048801 587 --SASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEI------------------------------------ 628 (1715)
Q Consensus 587 --~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~------------------------------------ 628 (1715)
...|++++|+ ++.+|++|+.||.|++||+.+++++..+.+
T Consensus 327 ~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (437)
T 3gre_A 327 RSLNALSTISVS--NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSL 404 (437)
T ss_dssp CSGGGGCCEEEE--TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-----------
T ss_pred ccCCceEEEEEC--CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccc
Confidence 4457788888 348899999999999999999998887775
Q ss_pred -ccceEEEEEEcCC--CCEEEEEeCCCeEEEEE
Q 048801 629 -GRFKLVDGKFSPD--GTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 629 -h~~~V~svafSPD--G~~LAsgs~DG~I~IWd 658 (1715)
|...|.+++|+++ +.+|++|+.||.|+||+
T Consensus 405 ~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 405 YHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 6788999999998 88999999999999994
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=338.56 Aligned_cols=300 Identities=17% Similarity=0.174 Sum_probs=233.6
Q ss_pred EEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC
Q 048801 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA--FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 238 ~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg--k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~ 315 (1715)
.+..|.+.|++++|+|+|++||+|+.||.|+||++.++ +.+..+.+|...|++++|+|++++|++|+.|++|+|||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 45567889999999999999999999999999999988 7888899999999999999999999999999999999999
Q ss_pred CCC---ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCC---cceecCCCCCCCccCccCCCCCCCC
Q 048801 316 DGL---PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQY---SPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 316 tg~---~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~---l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
++. ....+.+|...|++++|+|++. +|++++.|+.|++||+.++.. ...+
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------------------- 141 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNED---KFAVGSGARVISVCYFEQENDWWVSKHL--------------------- 141 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSS---CCEEEESSSCEEECCC-----CCCCEEE---------------------
T ss_pred CCCceeeeeEecccCCceEEEEECCCCC---EEEEEecCCeEEEEEECCcccceeeeEe---------------------
Confidence 887 7778889999999999999987 799999999999999987652 1111
Q ss_pred CCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCC---------CCceeeeeecCCCCCeeEEEEccCc
Q 048801 390 SSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE---------QPIHELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~---------~~~~~l~~l~gH~~~V~sLafspdg 460 (1715)
...|...|.+++|+|++.+|++|+.||.|++||+......... .....+..+ +|...|.+++|+|++
T Consensus 142 ---~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~ 217 (377)
T 3dwl_C 142 ---KRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG 217 (377)
T ss_dssp ---CSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS
T ss_pred ---ecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC
Confidence 1125778999999999999999999999999999654321110 113345555 899999999999986
Q ss_pred ccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
.+|++++.||.|++||+.++.... ..+..
T Consensus 218 --------------------------~~l~~~~~d~~i~iwd~~~~~~~~-------------------------~~~~~ 246 (377)
T 3dwl_C 218 --------------------------NALAYAGHDSSVTIAYPSAPEQPP-------------------------RALIT 246 (377)
T ss_dssp --------------------------SCEEEEETTTEEC-CEECSTTSCE-------------------------EECCC
T ss_pred --------------------------CEEEEEeCCCcEEEEECCCCCCcc-------------------------eeeEe
Confidence 799999999999999998644200 01334
Q ss_pred ccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc------------------------------eE------EEE-
Q 048801 541 LLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS------------------------------LV------HSL- 583 (1715)
Q Consensus 541 l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~------------------------------~l------~tL- 583 (1715)
+..|...|.+++|+|+|++|++|+.++.+ +|+..... .+ ..+
T Consensus 247 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (377)
T 3dwl_C 247 VKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFR 325 (377)
T ss_dssp EECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC--------------
T ss_pred ecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccccccccccccc
Confidence 56788899999999999999999877666 66654211 00 111
Q ss_pred ---------------ecCCCCeEEEEEccCCCc---EEEEEeCCCcEEEEEC
Q 048801 584 ---------------TGHSASSYVLDVHPFNPR---IAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 584 ---------------~gH~~~V~sLafSP~dg~---lLaSgs~DGtI~VWDl 617 (1715)
..|.+.|+++++.+.++. .|+|||.||.|+|||+
T Consensus 326 ~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 326 NMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -----------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred chhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 139999999998774444 7899999999999985
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=345.72 Aligned_cols=302 Identities=20% Similarity=0.167 Sum_probs=235.2
Q ss_pred cEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCeeEEEECCCCCceE--EEeCCCCCeEEEEecCCCCcceEEEEecCCC
Q 048801 276 FCLASCRGHEGDITDLAVSS-NNTLVASASNDFVIRVWRLPDGLPIS--VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG 352 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~tg~~l~--~L~gH~~~VtsLafSPdg~~~~~LaSgS~DG 352 (1715)
.......+|...|+||+|+| ++.+||+|+.||+|+|||+.++.... .+.+|.+.|++|+|+|.+.. +|++++.||
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~--~l~s~s~D~ 187 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTN--QFYASSMEG 187 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTT--EEEEECSSS
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCC--EEEEEeCCC
Confidence 33445667899999999999 56799999999999999998876544 44689999999999985332 899999999
Q ss_pred cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCcc
Q 048801 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVE 432 (1715)
Q Consensus 353 tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~ 432 (1715)
+|++||+.++... .+.. ...+...+.+++|+|++.+|++|+.||.|++||+...
T Consensus 188 ~v~iwd~~~~~~~-~~~~----------------------~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--- 241 (435)
T 4e54_B 188 TTRLQDFKGNILR-VFAS----------------------SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--- 241 (435)
T ss_dssp CEEEEETTSCEEE-EEEC----------------------CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC---
T ss_pred EEEEeeccCCcee-EEec----------------------cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc---
Confidence 9999999765422 1111 0112345788999999999999999999999998642
Q ss_pred CCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccc
Q 048801 433 DSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKV 512 (1715)
Q Consensus 433 ~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~ 512 (1715)
.+..+.+|...|.+++|+|++ ..+|++|+.||.|+|||+++.....
T Consensus 242 -------~~~~~~~h~~~v~~v~~~p~~-------------------------~~~~~s~s~d~~v~iwd~~~~~~~~-- 287 (435)
T 4e54_B 242 -------ELWNLRMHKKKVTHVALNPCC-------------------------DWFLATASVDQTVKIWDLRQVRGKA-- 287 (435)
T ss_dssp -------BCCCSBCCSSCEEEEEECTTC-------------------------SSEEEEEETTSBCCEEETTTCCSSS--
T ss_pred -------eeEEEecccceEEeeeecCCC-------------------------ceEEEEecCcceeeEEecccccccc--
Confidence 356678999999999999976 3588999999999999998643211
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCC----
Q 048801 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSA---- 588 (1715)
Q Consensus 513 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~---- 588 (1715)
......+|...|++++|+|+|.+|++|+.||.|+|||+.++.....+.+|..
T Consensus 288 ------------------------~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~ 343 (435)
T 4e54_B 288 ------------------------SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQ 343 (435)
T ss_dssp ------------------------CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCS
T ss_pred ------------------------eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccc
Confidence 1223356888999999999999999999999999999999999888877653
Q ss_pred --CeEEEEEccCCCcEEEEEe------------CCCcEEEEECCCCceEEEEE-cccceEEEE-EEcCCCCEEEEEeCCC
Q 048801 589 --SSYVLDVHPFNPRIAMSAG------------YDGRTIVWDIWEGTPIRIYE-IGRFKLVDG-KFSPDGTSIVLSDDVG 652 (1715)
Q Consensus 589 --~V~sLafSP~dg~lLaSgs------------~DGtI~VWDl~tgk~l~tl~-~h~~~V~sv-afSPDG~~LAsgs~DG 652 (1715)
.+..+.|+| .+.++++++ .++.|+|||+.+|+++..+. .|...|.++ +|+|+|.+||+|+ |+
T Consensus 344 ~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~ 421 (435)
T 4e54_B 344 HLTPIKAAWHP-RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GY 421 (435)
T ss_dssp SSCCCBCEECS-SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SS
T ss_pred cceeEEEEEcC-CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CC
Confidence 233456777 333444432 34679999999999998876 456677776 7999999999876 78
Q ss_pred eEEEEECCCCccc
Q 048801 653 QIYLLNTGQGESQ 665 (1715)
Q Consensus 653 ~I~IWdl~tGe~~ 665 (1715)
.|+||++.+|+..
T Consensus 422 ~i~iW~~~~gk~r 434 (435)
T 4e54_B 422 HILIWSQQEARTR 434 (435)
T ss_dssp EEEECCCC-----
T ss_pred cEEEEECCcCeee
Confidence 9999999988654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=356.39 Aligned_cols=295 Identities=22% Similarity=0.321 Sum_probs=245.7
Q ss_pred cEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCeeEEEECCCC-----CceEEEeCCCCCeEEEEecCCCCcceEEEEec
Q 048801 276 FCLASCRGHEGDITDLAVSSNN-TLVASASNDFVIRVWRLPDG-----LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS 349 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg-~lLASGS~DGtIrVWDl~tg-----~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS 349 (1715)
.....+.+|.+.|++|+|++++ .+|+||+.|++|+||++.+. .....+.+|...|++++|+|++. +|++|+
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~---~l~sgs 449 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ---FALSGS 449 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS---EEEEEE
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC---EEEEEe
Confidence 3445789999999999999865 79999999999999999764 34567899999999999999998 899999
Q ss_pred CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCC
Q 048801 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~ 429 (1715)
.||+|+|||+.++.....+ ..|...|.+++|+|++.+|++|+.|+.|+|||+...
T Consensus 450 ~Dg~v~vwd~~~~~~~~~~-------------------------~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~ 504 (694)
T 3dm0_A 450 WDGELRLWDLAAGVSTRRF-------------------------VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE 504 (694)
T ss_dssp TTSEEEEEETTTTEEEEEE-------------------------ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC
T ss_pred CCCcEEEEECCCCcceeEE-------------------------eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999999999887654433 235778999999999999999999999999998642
Q ss_pred CccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccC
Q 048801 430 SVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 509 (1715)
Q Consensus 430 ~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~ 509 (1715)
.. ........+|...|.+++|+|++. ...|++++.||+|++||+.+.+
T Consensus 505 ~~------~~~~~~~~~h~~~v~~~~~~~~~~------------------------~~~l~s~s~d~~v~vwd~~~~~-- 552 (694)
T 3dm0_A 505 CK------YTISEGGEGHRDWVSCVRFSPNTL------------------------QPTIVSASWDKTVKVWNLSNCK-- 552 (694)
T ss_dssp EE------EEECSSTTSCSSCEEEEEECSCSS------------------------SCEEEEEETTSCEEEEETTTCC--
T ss_pred cc------eeeccCCCCCCCcEEEEEEeCCCC------------------------cceEEEEeCCCeEEEEECCCCc--
Confidence 11 111223357899999999999751 2579999999999999998633
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCC
Q 048801 510 GKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSAS 589 (1715)
Q Consensus 510 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~ 589 (1715)
....+.+|...|++++|+|+|++|++|+.||.|+|||+.+++.+..+.. ...
T Consensus 553 ---------------------------~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~ 604 (694)
T 3dm0_A 553 ---------------------------LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSV 604 (694)
T ss_dssp ---------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSC
T ss_pred ---------------------------EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCc
Confidence 2334567889999999999999999999999999999999999888765 467
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEccc-------------------ceEEEEEEcCCCCEEEEEeC
Q 048801 590 SYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGR-------------------FKLVDGKFSPDGTSIVLSDD 650 (1715)
Q Consensus 590 V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~-------------------~~V~svafSPDG~~LAsgs~ 650 (1715)
|.+++|+| ++.+|++++ |+.|+|||+.+++++..+..+. ..+++++|||||++|++|+.
T Consensus 605 v~~~~~sp-~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~ 682 (694)
T 3dm0_A 605 IHALCFSP-NRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT 682 (694)
T ss_dssp EEEEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEET
T ss_pred EEEEEEcC-CCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcC
Confidence 99999999 677776654 6679999999999888775321 12678999999999999999
Q ss_pred CCeEEEEECC
Q 048801 651 VGQIYLLNTG 660 (1715)
Q Consensus 651 DG~I~IWdl~ 660 (1715)
||.|+||++.
T Consensus 683 Dg~i~iW~i~ 692 (694)
T 3dm0_A 683 DGVIRVWGIG 692 (694)
T ss_dssp TSEEEEEEC-
T ss_pred CCeEEEEecc
Confidence 9999999985
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=326.60 Aligned_cols=314 Identities=13% Similarity=0.144 Sum_probs=254.6
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC--ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEe
Q 048801 281 CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL--PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358 (1715)
Q Consensus 281 L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~--~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWD 358 (1715)
+..|..+|++++|+|++++||+|+.|+.|+|||+.+++ .+..+.+|...|++++|+|++. +|++++.||.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN---RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT---EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCC---EEEEEcCCCeEEEEE
Confidence 45689999999999999999999999999999999887 8889999999999999999987 899999999999999
Q ss_pred cCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCc
Q 048801 359 ARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPI 438 (1715)
Q Consensus 359 l~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~ 438 (1715)
+.+++....... ..|...|.+++|+|++.+|++|+.||.|++|++..... ..
T Consensus 81 ~~~~~~~~~~~~-----------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-----~~ 132 (372)
T 1k8k_C 81 LKGRTWKPTLVI-----------------------LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND-----WW 132 (372)
T ss_dssp EETTEEEEEEEC-----------------------CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT-----EE
T ss_pred CCCCeeeeeEEe-----------------------ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc-----ce
Confidence 987764333221 22456799999999999999999999999999976431 01
Q ss_pred eeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccc
Q 048801 439 HELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRA 518 (1715)
Q Consensus 439 ~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~ 518 (1715)
.......+|...|.+++|+|++ ..|++++.||.|++||+..........
T Consensus 133 ~~~~~~~~~~~~i~~~~~~~~~--------------------------~~l~~~~~dg~i~~~d~~~~~~~~~~~----- 181 (372)
T 1k8k_C 133 VCKHIKKPIRSTVLSLDWHPNS--------------------------VLLAAGSCDFKCRIFSAYIKEVEERPA----- 181 (372)
T ss_dssp EEEEECTTCCSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEECCCTTTSCCCC-----
T ss_pred eeeeeecccCCCeeEEEEcCCC--------------------------CEEEEEcCCCCEEEEEccccccccccc-----
Confidence 1223346789999999999986 799999999999999986432111000
Q ss_pred ccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccC
Q 048801 519 YHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPF 598 (1715)
Q Consensus 519 ~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~ 598 (1715)
..........+.....+..|...|.+++|+|++.+|++++.|+.|++||+.+++++..+.+|...|.+++|+|
T Consensus 182 ------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~- 254 (372)
T 1k8k_C 182 ------PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT- 254 (372)
T ss_dssp ------CBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-
T ss_pred ------ccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEec-
Confidence 0000000112344555668889999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCC--Cce--------------------------------E------EEE-EcccceEEEEE
Q 048801 599 NPRIAMSAGYDGRTIVWDIWE--GTP--------------------------------I------RIY-EIGRFKLVDGK 637 (1715)
Q Consensus 599 dg~lLaSgs~DGtI~VWDl~t--gk~--------------------------------l------~tl-~~h~~~V~sva 637 (1715)
++.+|++| .||.|++|++.+ ++. . ..+ .+|...|.+++
T Consensus 255 ~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 333 (372)
T 1k8k_C 255 ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQIS 333 (372)
T ss_dssp TTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEE
T ss_pred CCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeE
Confidence 67787776 999999999987 421 0 222 37888999998
Q ss_pred Ec-CCC---CEEEEEeCCCeEEEEECCCCcc
Q 048801 638 FS-PDG---TSIVLSDDVGQIYLLNTGQGES 664 (1715)
Q Consensus 638 fS-PDG---~~LAsgs~DG~I~IWdl~tGe~ 664 (1715)
|+ ++| .+|++|+.||.|+||++.+++.
T Consensus 334 ~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 334 VLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp EEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred EecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 66 777 9999999999999999987654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=322.28 Aligned_cols=294 Identities=14% Similarity=0.159 Sum_probs=237.4
Q ss_pred EEEecCCCCCeEEEEECCCCCE-EEEEeC---CCeeEEEECCCCCceEEE-eCCCCCeEEEEecCC---CCcceEEEEec
Q 048801 278 LASCRGHEGDITDLAVSSNNTL-VASASN---DFVIRVWRLPDGLPISVL-RGHTGAVTAIAFSPR---PSAIYQLLSSS 349 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSpDg~l-LASGS~---DGtIrVWDl~tg~~l~~L-~gH~~~VtsLafSPd---g~~~~~LaSgS 349 (1715)
...+.+|...|++++|+|++.. +++|+. ||.|+|||+.++...... .+|...|++++|+|+ +. +|++++
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~l~~~~ 87 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQR---YLATGD 87 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTC---CEEEEE
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCc---eEEEec
Confidence 3456789999999999999864 556665 999999999998776543 379999999999998 35 899999
Q ss_pred CCCcEEEEecCCCC-CcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEE------EccCCCeEEEecCCCeEE
Q 048801 350 DDGTCRIWDARYSQ-YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCA------YNANGTVFVTGSSDTFAR 422 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~-~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsla------fSpdG~~LatGs~DG~Ir 422 (1715)
.||.|++||+.+++ .+..+ ..|...|.+++ |++++.+|++|+.||.|+
T Consensus 88 ~dg~i~iwd~~~~~~~~~~~-------------------------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEMPVYSV-------------------------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEE-------------------------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred CCCeEEEEeCCCCCccEEEE-------------------------EecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 99999999998776 32222 24567799995 578999999999999999
Q ss_pred EEeCCCCCccCCCCCceeeeeecCCCC----CeeEEEE----ccCcccccccccccccccccccccCCcccCceEEEEcC
Q 048801 423 VWSACKSSVEDSEQPIHELDVLSGHEN----DVNYVQF----SGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR 494 (1715)
Q Consensus 423 VWDl~t~~~~~~~~~~~~l~~l~gH~~----~V~sLaf----spdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~ 494 (1715)
+||+.++. ..+..+..|.+ .|.+++| ++++ ..|++++.
T Consensus 143 vwd~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------------------~~l~~~~~ 188 (357)
T 3i2n_A 143 VWDPRQKD--------DPVANMEPVQGENKRDCWTVAFGNAYNQEE--------------------------RVVCAGYD 188 (357)
T ss_dssp EECTTSCS--------SCSEEECCCTTSCCCCEEEEEEECCCC-CC--------------------------CEEEEEET
T ss_pred EEeCCCCC--------CcceeccccCCCCCCceEEEEEEeccCCCC--------------------------CEEEEEcc
Confidence 99998753 12334444433 8889984 4544 79999999
Q ss_pred CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC---CCCEEEEEecCCeEEE
Q 048801 495 DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL---DNRFVLAAIMDCRICV 571 (1715)
Q Consensus 495 DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP---DG~~LaTgs~DGtI~I 571 (1715)
||.|++||+++++. .....|...|.+++|+| ++.+|++|+.||.|++
T Consensus 189 d~~i~i~d~~~~~~------------------------------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 189 NGDIKLFDLRNMAL------------------------------RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp TSEEEEEETTTTEE------------------------------EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred CCeEEEEECccCce------------------------------eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence 99999999986431 12244667899999999 9999999999999999
Q ss_pred EECCCCceEEEEe-----cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-------------------ceEEEEE
Q 048801 572 WNAVDGSLVHSLT-----GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG-------------------TPIRIYE 627 (1715)
Q Consensus 572 WDl~sg~~l~tL~-----gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg-------------------k~l~tl~ 627 (1715)
||+.+++.+..+. +|...|++++|+|++..+|++|+.||.|+|||+.++ +++..+.
T Consensus 239 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (357)
T 3i2n_A 239 FDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT 318 (357)
T ss_dssp EEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE
T ss_pred EeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccc
Confidence 9998876655544 999999999999954448999999999999999754 4677888
Q ss_pred cccceEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCc
Q 048801 628 IGRFKLVDGKFSPDGTSIV-LSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 628 ~h~~~V~svafSPDG~~LA-sgs~DG~I~IWdl~tGe 663 (1715)
.|...|.+++|+|+|++|+ +++.||.|+||++.+.+
T Consensus 319 ~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 319 LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 8999999999999999998 79999999999998764
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=328.91 Aligned_cols=301 Identities=17% Similarity=0.276 Sum_probs=241.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec--CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR--GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~--gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L 323 (1715)
+++|+||++ ++||+|. |++|+|||+.+|+++..+. +|...|++|+|+|+|++||+|+.||+|+|||+.+++.+..+
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~ 185 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 185 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence 567899975 5888875 8999999999999887765 67888999999999999999999999999999999999999
Q ss_pred eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEE
Q 048801 324 RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCC 403 (1715)
Q Consensus 324 ~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsl 403 (1715)
.+|...|.++++++. +|++|+.|+.+++||......... ....|...+.++
T Consensus 186 ~~h~~~v~~~s~~~~-----~l~sgs~d~~i~~~d~~~~~~~~~------------------------~~~~h~~~~~~~ 236 (420)
T 4gga_A 186 TSHSARVGSLSWNSY-----ILSSGSRSGHIHHHDVRVAEHHVA------------------------TLSGHSQEVCGL 236 (420)
T ss_dssp CCCSSCEEEEEEETT-----EEEEEETTSEEEEEETTSSSCEEE------------------------EEECCSSCEEEE
T ss_pred eCCCCceEEEeeCCC-----EEEEEeCCCceeEeeecccceeeE------------------------Eecccccceeee
Confidence 999999999998653 899999999999999876442211 123456779999
Q ss_pred EEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCc
Q 048801 404 AYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW 483 (1715)
Q Consensus 404 afSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~ 483 (1715)
.|+++|.++++++.|+.|+||+..++.. ....+.....|...|.+++|+|.+
T Consensus 237 ~~~~~g~~l~s~~~D~~v~i~~~~~~~~-----~~~~~~~~~~~~~~V~~~~~~p~~----------------------- 288 (420)
T 4gga_A 237 RWAPDGRHLASGGNDNLVNVWPSAPGEG-----GWVPLQTFTQHQGAVKAVAWCPWQ----------------------- 288 (420)
T ss_dssp EECTTSSEEEEEETTSCEEEEESSCCSS-----CSCCSEEECCCSSCEEEEEECTTC-----------------------
T ss_pred eecCCCCeeeeeeccccceEEeeccccc-----cceeeeeecccCCceeeeeeCCCc-----------------------
Confidence 9999999999999999999999987542 123456678899999999999975
Q ss_pred ccCceEEE--EcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE
Q 048801 484 FCHDNIVT--CSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561 (1715)
Q Consensus 484 ~~~~~LaS--gS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La 561 (1715)
...+++ |+.|++|++||+.++.... ...+...+.++.|++++..|+
T Consensus 289 --~~~la~~~gs~D~~I~iwd~~t~~~~~------------------------------~~~~~~~v~~~~~~~~~~~lv 336 (420)
T 4gga_A 289 --SNVLATGGGTSDRHIRIWNVCSGACLS------------------------------AVDAHSQVCSILWSPHYKELI 336 (420)
T ss_dssp --TTEEEEEECTTTCEEEEEETTTTEEEE------------------------------EEECSSCEEEEEEETTTTEEE
T ss_pred --ccEEEEEeecCCCEEEEEeCCccccce------------------------------eeccccceeeeeecCCCCeEE
Confidence 355554 5689999999998754221 112345688999999999998
Q ss_pred EEe--cCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEE
Q 048801 562 AAI--MDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKF 638 (1715)
Q Consensus 562 Tgs--~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svaf 638 (1715)
+++ .|+.|+|||+.+++++..+.+|.+.|++|+|+| ++.+|+||+.||+|+|||+.+..+.+....+...+....|
T Consensus 337 ~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 337 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp EEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred EEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 876 689999999999999999999999999999999 7788999999999999999887776666544444433333
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=327.76 Aligned_cols=328 Identities=16% Similarity=0.161 Sum_probs=258.7
Q ss_pred CCcEEEEeCCCCcEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCeeEEEECCCCCceEEEe-------------CCCCC
Q 048801 264 DRLVKIWSMETAFCLASCRGHEGDITDLAVSS-NNTLVASASNDFVIRVWRLPDGLPISVLR-------------GHTGA 329 (1715)
Q Consensus 264 DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~tg~~l~~L~-------------gH~~~ 329 (1715)
++.++||++.+++....+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++.....+. +|...
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 45688999998889999999999999999999 99999999999999999999887655443 59999
Q ss_pred eEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC-
Q 048801 330 VTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN- 408 (1715)
Q Consensus 330 VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd- 408 (1715)
|++++|+|++.. +|++++.||.|++||+.+++....+. +...+.+++|++.
T Consensus 102 v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~ 153 (408)
T 4a11_B 102 VETVQWYPHDTG--MFTSSSFDKTLKVWDTNTLQTADVFN--------------------------FEETVYSHHMSPVS 153 (408)
T ss_dssp EEEEEECTTCTT--CEEEEETTSEEEEEETTTTEEEEEEE--------------------------CSSCEEEEEECSSC
T ss_pred EEEEEEccCCCc--EEEEEeCCCeEEEeeCCCCccceecc--------------------------CCCceeeeEeecCC
Confidence 999999994432 79999999999999999877654442 2345889999884
Q ss_pred --CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccC
Q 048801 409 --GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCH 486 (1715)
Q Consensus 409 --G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~ 486 (1715)
+.+|++|+.+|.|++||+.++. .+..+.+|...|.+++|+|++ .
T Consensus 154 ~~~~~~~~~~~~~~v~~~d~~~~~---------~~~~~~~~~~~v~~~~~~~~~-------------------------~ 199 (408)
T 4a11_B 154 TKHCLVAVGTRGPKVQLCDLKSGS---------CSHILQGHRQEILAVSWSPRY-------------------------D 199 (408)
T ss_dssp SSCCEEEEEESSSSEEEEESSSSC---------CCEEECCCCSCEEEEEECSSC-------------------------T
T ss_pred CCCcEEEEEcCCCeEEEEeCCCcc---------eeeeecCCCCcEEEEEECCCC-------------------------C
Confidence 4599999999999999998643 356778899999999999986 2
Q ss_pred ceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC
Q 048801 487 DNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD 566 (1715)
Q Consensus 487 ~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D 566 (1715)
..|++++.||.|++||+++....... +.. ...............|...|.+++|+|++.+|++++.|
T Consensus 200 ~ll~~~~~dg~i~i~d~~~~~~~~~~--------~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 266 (408)
T 4a11_B 200 YILATASADSRVKLWDVRRASGCLIT--------LDQ-----HNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD 266 (408)
T ss_dssp TEEEEEETTSCEEEEETTCSSCCSEE--------CCT-----TTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT
T ss_pred cEEEEEcCCCcEEEEECCCCCccccc--------ccc-----cccccceeeccccccccCceeEEEEcCCCCEEEEecCC
Confidence 36999999999999999875411110 000 00001112233446788899999999999999999999
Q ss_pred CeEEEEECCCCceEEEEecCCC----CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCC
Q 048801 567 CRICVWNAVDGSLVHSLTGHSA----SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDG 642 (1715)
Q Consensus 567 GtI~IWDl~sg~~l~tL~gH~~----~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG 642 (1715)
|.|++||+.+++....+.++.. ....+.+.......+++++.|+.|++||+.+++++..+.+|...|.+++|+|+|
T Consensus 267 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 346 (408)
T 4a11_B 267 NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF 346 (408)
T ss_dssp SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTT
T ss_pred CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCC
Confidence 9999999999887665543311 111222333344556667889999999999999999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCcccc
Q 048801 643 TSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 643 ~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
.+|++++.||.|++|++.+++.+.
T Consensus 347 ~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 347 QELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp TEEEEEETTSCEEEEEECC-----
T ss_pred CEEEEECCCCeEEEEeCCCCCccC
Confidence 999999999999999999887553
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-32 Score=336.99 Aligned_cols=316 Identities=13% Similarity=0.101 Sum_probs=231.5
Q ss_pred ceeEEEEcCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcE--EEEecCCCCCeEEEEECC-CCCEEEEEeCCCe
Q 048801 233 MQNIKKLRGHRDAVYCAIFDR-SGRFVITGSDDRLVKIWSMETAFC--LASCRGHEGDITDLAVSS-NNTLVASASNDFV 308 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSp-DG~~LaTGS~DGtIrIWDl~tgk~--l~tL~gHs~~VtsLafSp-Dg~lLASGS~DGt 308 (1715)
......+.+|...|+||+|+| ++.+||+|+.||.|+|||+.++.. +..+.+|.+.|++|+|+| ++.+|++|+.||+
T Consensus 109 ~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 109 YRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp TTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred eeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 444566788999999999999 567999999999999999987754 445678999999999998 6899999999999
Q ss_pred eEEEECCCCCceEEEeC--CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 309 IRVWRLPDGLPISVLRG--HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 309 IrVWDl~tg~~l~~L~g--H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
|+|||+.++........ +...+.+++|+|++. +|++|+.||.|++||+.... +.
T Consensus 189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~g~~dg~i~~wd~~~~~-~~-------------------- 244 (435)
T 4e54_B 189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSR---MVVTGDNVGNVILLNMDGKE-LW-------------------- 244 (435)
T ss_dssp EEEEETTSCEEEEEECCSSCSCCCCCEEEETTTT---EEEEECSSSBEEEEESSSCB-CC--------------------
T ss_pred EEEeeccCCceeEEeccCCCCccEEEEEECCCCC---EEEEEeCCCcEeeeccCcce-eE--------------------
Confidence 99999976644333333 334678999999988 89999999999999986432 11
Q ss_pred CCCCCCCCCCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~ 465 (1715)
....|...|.+++|+|++. +|++|+.|+.|+|||+.+... ...+....+|...|++++|+|++
T Consensus 245 -----~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~------~~~~~~~~~h~~~v~~~~~spdg----- 308 (435)
T 4e54_B 245 -----NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG------KASFLYSLPHRHPVNAACFSPDG----- 308 (435)
T ss_dssp -----CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS------SSCCSBCCBCSSCEEECCBCTTS-----
T ss_pred -----EEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc------cceEEEeeeccccccceeECCCC-----
Confidence 1234677899999999886 788999999999999987542 22234456899999999999986
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
.+|++++.||.|+|||+.++............ . ..............
T Consensus 309 ---------------------~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~~~~~ 355 (435)
T 4e54_B 309 ---------------------ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR---------H---FQHLTPIKAAWHPR 355 (435)
T ss_dssp ---------------------SEEEEEESSSCEEEEESSSSSSEEEECCCCCC---------C---CSSSCCCBCEECSS
T ss_pred ---------------------CeeEEEcCCCEEEEEECCCCccceEEeccccc---------c---cccceeEEEEEcCC
Confidence 79999999999999999876533221100000 0 00000011111122
Q ss_pred CCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCceEEEEe-cCCCCeEEE-EEccCCCcEEEEEeCCCcEEEEECCCCce
Q 048801 546 RGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSLVHSLT-GHSASSYVL-DVHPFNPRIAMSAGYDGRTIVWDIWEGTP 622 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~~l~tL~-gH~~~V~sL-afSP~dg~lLaSgs~DGtI~VWDl~tgk~ 622 (1715)
..+..+++++++..+++++ .++.|+|||..+++++..+. +|...|.++ +|+| ++.+|++|+ |++|+||++.+|+.
T Consensus 356 ~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 356 YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp SSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSEEEECCCC----
T ss_pred CCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCcEEEEECCcCee
Confidence 2344445555555444433 34579999999999998875 688888887 6999 677888765 88999999998875
Q ss_pred E
Q 048801 623 I 623 (1715)
Q Consensus 623 l 623 (1715)
.
T Consensus 434 r 434 (435)
T 4e54_B 434 R 434 (435)
T ss_dssp -
T ss_pred e
Confidence 4
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-32 Score=320.70 Aligned_cols=317 Identities=14% Similarity=0.193 Sum_probs=247.9
Q ss_pred EecCCCCCeEEEEECCC----CCEEEEEeCCCeeEEEECCCCCceEEEeC-----CCCCeEEEEecCCCCc-ceEEEEec
Q 048801 280 SCRGHEGDITDLAVSSN----NTLVASASNDFVIRVWRLPDGLPISVLRG-----HTGAVTAIAFSPRPSA-IYQLLSSS 349 (1715)
Q Consensus 280 tL~gHs~~VtsLafSpD----g~lLASGS~DGtIrVWDl~tg~~l~~L~g-----H~~~VtsLafSPdg~~-~~~LaSgS 349 (1715)
...+|...|++++|+|+ ...+++++.++.|+|||+.++..+..+.. |...|++++|+|++.. ..+|++++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34589999999999984 45666777777999999998888877764 5578999999998421 12899999
Q ss_pred CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCC
Q 048801 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t 428 (1715)
.||.|++||+.+++.+..+ ..|...|.+++|+| ++.+|++|+.||.|++||+.+
T Consensus 93 ~dg~i~v~d~~~~~~~~~~-------------------------~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHY-------------------------VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp TTCEEEEECTTTCCEEEEE-------------------------ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCCEEEEEEchhceEeeee-------------------------cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 9999999999887655443 23567799999999 999999999999999999986
Q ss_pred CCccCCCCCceeeeee---cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC
Q 048801 429 SSVEDSEQPIHELDVL---SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 505 (1715)
Q Consensus 429 ~~~~~~~~~~~~l~~l---~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t 505 (1715)
++ .+..+ .+|...|.+++|+|++ ..|++++.||.|++||+.+
T Consensus 148 ~~---------~~~~~~~~~~~~~~v~~~~~~~~~--------------------------~~l~~~~~dg~i~i~d~~~ 192 (366)
T 3k26_A 148 DT---------LVAIFGGVEGHRDEVLSADYDLLG--------------------------EKIMSCGMDHSLKLWRINS 192 (366)
T ss_dssp TE---------EEEEECSTTSCSSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEESCS
T ss_pred Ce---------EEEEecccccccCceeEEEECCCC--------------------------CEEEEecCCCCEEEEECCC
Confidence 43 34444 7899999999999986 7999999999999999987
Q ss_pred CccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce------
Q 048801 506 RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL------ 579 (1715)
Q Consensus 506 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~------ 579 (1715)
++....+.. ...+........................|...|.+++|+ +.+|++++.|+.|++||+.++..
T Consensus 193 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 269 (366)
T 3k26_A 193 KRMMNAIKE-SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIK 269 (366)
T ss_dssp HHHHHHHHH-HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCC
T ss_pred Cccccccce-eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccc
Confidence 653322111 000000000000000000111223344588899999998 78999999999999999988754
Q ss_pred --------EEEEecCCCCeEEEEEccCC--CcEEEEEeCCCcEEEEECCCCce----EEEEEcc--cceEEEEEEcCCCC
Q 048801 580 --------VHSLTGHSASSYVLDVHPFN--PRIAMSAGYDGRTIVWDIWEGTP----IRIYEIG--RFKLVDGKFSPDGT 643 (1715)
Q Consensus 580 --------l~tL~gH~~~V~sLafSP~d--g~lLaSgs~DGtI~VWDl~tgk~----l~tl~~h--~~~V~svafSPDG~ 643 (1715)
+..+.+|...|++++|+| + +.+|++|+.||.|+|||+.++++ +..+..| ...|.+++|+|+|+
T Consensus 270 ~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 348 (366)
T 3k26_A 270 PSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS 348 (366)
T ss_dssp TTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS
T ss_pred cCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC
Confidence 788899999999999999 5 88999999999999999998863 4467766 68899999999999
Q ss_pred EEEEEeCCCeEEEEECC
Q 048801 644 SIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 644 ~LAsgs~DG~I~IWdl~ 660 (1715)
+|++++.||.|+|||+.
T Consensus 349 ~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 349 ILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEEEETTSEEEEEEC-
T ss_pred eEEEEeCCCEEEEEEec
Confidence 99999999999999984
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=312.95 Aligned_cols=317 Identities=19% Similarity=0.224 Sum_probs=236.5
Q ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----cEEEEecCCCCCeEEEEECC--CCCEEEEEeCCCeeE
Q 048801 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA----FCLASCRGHEGDITDLAVSS--NNTLVASASNDFVIR 310 (1715)
Q Consensus 237 ~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg----k~l~tL~gHs~~VtsLafSp--Dg~lLASGS~DGtIr 310 (1715)
..+.||.+.|++++|+|++++||+|+.||.|+||++.++ +.+..+.+|...|++++|+| ++.+|++|+.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 357899999999999999999999999999999999876 57778899999999999999 699999999999999
Q ss_pred EEECCCC---------CceEEEeCCCCCeEEEEecCC--CCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccC
Q 048801 311 VWRLPDG---------LPISVLRGHTGAVTAIAFSPR--PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITG 379 (1715)
Q Consensus 311 VWDl~tg---------~~l~~L~gH~~~VtsLafSPd--g~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g 379 (1715)
|||+.++ .++..+.+|...|++++|+|+ +. +|++++.||.|++||+.+++.+..+......
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----- 156 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL---KLACLGNDGILRLYDALEPSDLRSWTLTSEM----- 156 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS---EEEEEETTCEEEEEECSSTTCTTCCEEEEEE-----
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc---EEEEecCCCcEEEecCCChHHhccccccccc-----
Confidence 9999887 457888899999999999998 76 8999999999999999988765544321110
Q ss_pred ccCCCCCCCCCCCCCCCCcceeEEEEccC---CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEE
Q 048801 380 KSNVPSNNGPSSSNGLQSHQILCCAYNAN---GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF 456 (1715)
Q Consensus 380 ~~~~~~~~~~~~~~~~h~~~VtslafSpd---G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLaf 456 (1715)
.........+...+.+++|+|+ +.+|++++.++.+.+|+...+. ...+..+.+|...|.+++|
T Consensus 157 -------~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~~~i~~~~~ 222 (351)
T 3f3f_A 157 -------KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK-------LHVAAKLPGHKSLIRSISW 222 (351)
T ss_dssp -------ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC-------EEEEEECCCCCSCEEEEEE
T ss_pred -------cccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc-------eeeeeecCCCCcceeEEEE
Confidence 0011122345677999999997 8999999999999888776542 3446778899999999999
Q ss_pred ccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCC
Q 048801 457 SGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536 (1715)
Q Consensus 457 spdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 536 (1715)
+|++.. ...+|++++.||.|++||+.++.....
T Consensus 223 ~p~~~~----------------------~~~~l~s~~~dg~i~iwd~~~~~~~~~------------------------- 255 (351)
T 3f3f_A 223 APSIGR----------------------WYQLIATGCKDGRIRIFKITEKLSPLA------------------------- 255 (351)
T ss_dssp CCCSSC----------------------SSEEEEEEETTSCEEEEEEEECC-----------------------------
T ss_pred CCCCCC----------------------cceEEEEEcCCCeEEEEeCCCCcCccc-------------------------
Confidence 997500 015899999999999999986431111
Q ss_pred CcccccCCCCCeeEEEeCCCCCEEEE----EecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 048801 537 PRQRLLPTPRGVNMIVWSLDNRFVLA----AIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRT 612 (1715)
Q Consensus 537 ~~~~l~~h~~~VtslafSPDG~~LaT----gs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI 612 (1715)
.......+....+++....++. +.....+.+|+...++.+..+.+|...|++++|+| ++.+|++|+.||.|
T Consensus 256 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v 330 (351)
T 3f3f_A 256 ----SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL-TGTILSSAGDDGKV 330 (351)
T ss_dssp ---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS-SSCCEEEEETTSCE
T ss_pred ----cCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC-CCCEEEEecCCCcE
Confidence 0011112222233333333333 33445667777777888999999999999999999 77899999999999
Q ss_pred EEEECCCCceEEEEE
Q 048801 613 IVWDIWEGTPIRIYE 627 (1715)
Q Consensus 613 ~VWDl~tgk~l~tl~ 627 (1715)
+||++.+++.+..+.
T Consensus 331 ~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 331 RLWKATYSNEFKCMS 345 (351)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEecCcCcchhhee
Confidence 999999887665554
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-32 Score=329.77 Aligned_cols=347 Identities=16% Similarity=0.189 Sum_probs=261.5
Q ss_pred eeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 048801 195 VHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET 274 (1715)
Q Consensus 195 V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~t 274 (1715)
+..+.|.+.|..+....... ....+.....+....+.+| ..+.+.+|++++++||+|+.||.|+|||+.+
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~---------~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 128 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDG---------HDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF 128 (420)
T ss_dssp CTTCEEEEEETTEEEEEETT---------EEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS
T ss_pred ccceeeeecCCeEEEEEcCC---------cEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC
Confidence 34566666665444333222 2222233333444445566 4555667899999999999999999999999
Q ss_pred CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcE
Q 048801 275 AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtV 354 (1715)
++.+..+.+|...|++++|+|++.+|++|+.|+.|+|||+.+++.+..+.+|...|++++|+|++. +|++++.||+|
T Consensus 129 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~s~~~d~~v 205 (420)
T 3vl1_A 129 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR---NVLSASLDGTI 205 (420)
T ss_dssp CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTT---EEEEEETTSCE
T ss_pred cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC---EEEEEcCCCcE
Confidence 999999999999999999999999999999999999999999999999999999999999999987 89999999999
Q ss_pred EEEecCCCCCcceecCCCCCCC-ccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccC
Q 048801 355 RIWDARYSQYSPRIYLPKPPDA-ITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVED 433 (1715)
Q Consensus 355 rIWDl~tg~~l~~i~~~~~~~~-i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~ 433 (1715)
++||+.+++.+..+........ +...... ..........+...+.+++|+|+|.+|++|+.||.|++||+.++.
T Consensus 206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--- 280 (420)
T 3vl1_A 206 RLWECGTGTTIHTFNRKENPHDGVNSIALF--VGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE--- 280 (420)
T ss_dssp EEEETTTTEEEEEECBTTBTTCCEEEEEEE--ECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC---
T ss_pred EEeECCCCceeEEeecCCCCCCCccEEEEe--cCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc---
Confidence 9999998887666543211100 0000000 000111222345668888899999999999999999999998753
Q ss_pred CCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc
Q 048801 434 SEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG 513 (1715)
Q Consensus 434 ~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~ 513 (1715)
........|...|.+++|+|++ ..+|++++.||.|++||++++..
T Consensus 281 -----~~~~~~~~~~~~v~~~~~~~~~-------------------------~~~l~~g~~dg~i~vwd~~~~~~----- 325 (420)
T 3vl1_A 281 -----QTIQLPSKFTCSCNSLTVDGNN-------------------------ANYIYAGYENGMLAQWDLRSPEC----- 325 (420)
T ss_dssp -----EEEEECCTTSSCEEEEEECSSC-------------------------TTEEEEEETTSEEEEEETTCTTS-----
T ss_pred -----eeEEcccccCCCceeEEEeCCC-------------------------CCEEEEEeCCCeEEEEEcCCCcC-----
Confidence 2233445688999999999986 23899999999999999986431
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccC-CCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC---------ceEEEE
Q 048801 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLLP-TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG---------SLVHSL 583 (1715)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~-h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg---------~~l~tL 583 (1715)
+...+.. +...|.++.+ +++.+|++++.|+.|++|++..+ .....+
T Consensus 326 -----------------------~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~ 381 (420)
T 3vl1_A 326 -----------------------PVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFL 381 (420)
T ss_dssp -----------------------CSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEE
T ss_pred -----------------------chhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEE
Confidence 1222333 5567887755 57889999999999999998773 233456
Q ss_pred ecCCCCeEEEEEccCCCc---EEEEEeCCCcEEEEECCC
Q 048801 584 TGHSASSYVLDVHPFNPR---IAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 584 ~gH~~~V~sLafSP~dg~---lLaSgs~DGtI~VWDl~t 619 (1715)
.+|.+.|.+++|+|+ +. .+++++.+|.+.+|++..
T Consensus 382 ~~~~~~v~~~~~s~~-~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 382 VSNDDAVSQFCYVSD-DESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCSSCCCCEEEEECC-SSSSCEEEEEETTTEEEEEESCC
T ss_pred ccCCcceEEEEEccC-CCCcceEEEEcCCceEEEEeccC
Confidence 789999999999994 44 555667889999999854
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=304.90 Aligned_cols=284 Identities=17% Similarity=0.268 Sum_probs=237.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec--CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR--GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~--gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L 323 (1715)
+++|+||+++ +||+|. |++|+|||+.+++++..+. +|...|++++|+|++++||+|+.||+|+||++.+++++..+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4679999986 777765 8999999999999888765 67888999999999999999999999999999999999999
Q ss_pred eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEE
Q 048801 324 RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCC 403 (1715)
Q Consensus 324 ~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsl 403 (1715)
.+|...+.++.+.+. .|++++.++.+++|+......... ....|...+.++
T Consensus 106 ~~h~~~~~~~~~~~~-----~l~s~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~ 156 (318)
T 4ggc_A 106 TSHSARVGSLSWNSY-----ILSSGSRSGHIHHHDVRVAEHHVA------------------------TLSGHSQEVCGL 156 (318)
T ss_dssp ECCSSCEEEEEEETT-----EEEEEETTSEEEEEETTSSSCEEE------------------------EEECCSSCEEEE
T ss_pred cCccceEEEeecCCC-----EEEEEecCCceEeeecCCCceeEE------------------------EEcCccCceEEE
Confidence 999999988777653 799999999999999876543211 122356779999
Q ss_pred EEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCc
Q 048801 404 AYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW 483 (1715)
Q Consensus 404 afSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~ 483 (1715)
++++++.+|++++.||.|++||+.+++. ..........|.+.|.++.+++..
T Consensus 157 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~----------------------- 208 (318)
T 4ggc_A 157 RWAPDGRHLASGGNDNLVNVWPSAPGEG-----GWVPLQTFTQHQGAVKAVAWCPWQ----------------------- 208 (318)
T ss_dssp EECTTSSEEEEEETTSCEEEEESSCBTT-----BSCCSEEECCCCSCEEEEEECTTS-----------------------
T ss_pred EEcCCCCEEEEEecCcceeEEECCCCcc-----cccceeeecccCCceEEEEecCCC-----------------------
Confidence 9999999999999999999999987542 122345567788899999999865
Q ss_pred ccCc--eEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE
Q 048801 484 FCHD--NIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561 (1715)
Q Consensus 484 ~~~~--~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La 561 (1715)
.. .+++++.++.|++||..... ......+...+..++|++++..++
T Consensus 209 --~~~~~~~~~~~~~~i~lwd~~~~~------------------------------~~~~~~~~~~v~~~~~~~~~~~~~ 256 (318)
T 4ggc_A 209 --SNVLATGGGTSDRHIRIWNVCSGA------------------------------CLSAVDAHSQVCSILWSPHYKELI 256 (318)
T ss_dssp --TTEEEEEECTTTCEEEEEETTTCC------------------------------EEEEEECSSCEEEEEEETTTTEEE
T ss_pred --CcEEEEEecCCCCEEEEEeccccc------------------------------ccccccceeeeeeeeecccccceE
Confidence 22 34567889999999987533 112234566789999999999988
Q ss_pred EEe--cCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 562 AAI--MDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 562 Tgs--~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
+++ .|+.|+|||+.+++++.++.+|.+.|++|+|+| ++.+|+||+.||+|+|||+.+..
T Consensus 257 ~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 257 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECCCCC
Confidence 765 789999999999999999999999999999999 77889999999999999997654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-31 Score=323.72 Aligned_cols=298 Identities=16% Similarity=0.297 Sum_probs=242.4
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecC-CCCCeEEEEECCCCCEEEEEeCCCeeEEEEC
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRG-HEGDITDLAVSSNNTLVASASNDFVIRVWRL 314 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~g-Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl 314 (1715)
+....+|...+++.+++.++..+++++.||.|+||++.+++....+.. |...|++++|+|++.+|++|+.||.|+|||+
T Consensus 84 ~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp EEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 344567777655444444456688888999999999999999888776 8999999999999999999999999999999
Q ss_pred CCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 315 PDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 315 ~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
.+++.+..+.+|...|.+++|.+ . +|++++.||.|++||+........ ...
T Consensus 164 ~~~~~~~~~~~~~~~v~~~~~~~--~---~l~~~~~dg~i~i~d~~~~~~~~~------------------------~~~ 214 (401)
T 4aez_A 164 ESQTKLRTMAGHQARVGCLSWNR--H---VLSSGSRSGAIHHHDVRIANHQIG------------------------TLQ 214 (401)
T ss_dssp TTCCEEEEECCCSSCEEEEEEET--T---EEEEEETTSEEEEEETTSSSCEEE------------------------EEE
T ss_pred cCCeEEEEecCCCCceEEEEECC--C---EEEEEcCCCCEEEEecccCcceee------------------------EEc
Confidence 99999999999999999999954 3 899999999999999984432111 112
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccc
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEE 474 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~ 474 (1715)
.|...|.+++|+|++.+|++|+.||.|++||+.++ ..+..+..|...|.+++|+|++
T Consensus 215 ~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~---------~~~~~~~~~~~~v~~~~~~p~~-------------- 271 (401)
T 4aez_A 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS---------IPKFTKTNHNAAVKAVAWCPWQ-------------- 271 (401)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS---------SEEEEECCCSSCCCEEEECTTS--------------
T ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC---------CccEEecCCcceEEEEEECCCC--------------
Confidence 35677999999999999999999999999999864 3456778899999999999976
Q ss_pred ccccccCCcccCceEEEEc--CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 048801 475 NVPKFKNSWFCHDNIVTCS--RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIV 552 (1715)
Q Consensus 475 ~~~~~~~s~~~~~~LaSgS--~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsla 552 (1715)
...+++++ .||.|++||+.+++... ...+...|.+++
T Consensus 272 -----------~~ll~~~~gs~d~~i~i~d~~~~~~~~------------------------------~~~~~~~v~~~~ 310 (401)
T 4aez_A 272 -----------SNLLATGGGTMDKQIHFWNAATGARVN------------------------------TVDAGSQVTSLI 310 (401)
T ss_dssp -----------TTEEEEECCTTTCEEEEEETTTCCEEE------------------------------EEECSSCEEEEE
T ss_pred -----------CCEEEEecCCCCCEEEEEECCCCCEEE------------------------------EEeCCCcEEEEE
Confidence 35777765 79999999998644221 112456799999
Q ss_pred eCCCCCEEEEEe--cCCeEEEEECCCCceEE--EEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE
Q 048801 553 WSLDNRFVLAAI--MDCRICVWNAVDGSLVH--SLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 553 fSPDG~~LaTgs--~DGtI~IWDl~sg~~l~--tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~ 627 (1715)
|+|++.+|++++ .||.|+||++.++.... .+.+|...|.+++|+| ++.+|++++.||.|+||++.+++.+....
T Consensus 311 ~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 311 WSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp ECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEECTTSEEEEEECCC--------
T ss_pred ECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 999999999954 89999999999976554 4679999999999999 78899999999999999999998776543
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-30 Score=303.55 Aligned_cols=289 Identities=21% Similarity=0.371 Sum_probs=239.3
Q ss_pred CCCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 048801 190 MQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKI 269 (1715)
Q Consensus 190 ~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrI 269 (1715)
.|...|..+.|.+.+..++... .+.....|.....+....+.+|...|.+++|+|++++|++|+.||.|+|
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~---------~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSS---------ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEE---------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ccCCcEEEEEECCCCCEEEEee---------CCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 5677889999888775444332 2222333444566788899999999999999999999999999999999
Q ss_pred EeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec
Q 048801 270 WSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS 349 (1715)
Q Consensus 270 WDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS 349 (1715)
||+.+++++..+.+|...|.+++|+|++.+|++|+.||.|++||+.+++.+..+..|...|.+++|+|++. +|++++
T Consensus 92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~ 168 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---LIVSSS 168 (312)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS---EEEEEE
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC---EEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 899999
Q ss_pred CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCC
Q 048801 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~ 429 (1715)
.||.|++||+.+++.+..+.. .+...+.+++|+|++.+|++++.||.|++||+.++
T Consensus 169 ~d~~i~~wd~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 224 (312)
T 4ery_A 169 YDGLCRIWDTASGQCLKTLID------------------------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 224 (312)
T ss_dssp TTSCEEEEETTTCCEEEEECC------------------------SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred CCCcEEEEECCCCceeeEEec------------------------cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 999999999988765443311 12446899999999999999999999999999763
Q ss_pred CccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccC
Q 048801 430 SVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 509 (1715)
Q Consensus 430 ~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~ 509 (1715)
+ .+..+.+|...+.
T Consensus 225 ~---------~~~~~~~~~~~~~--------------------------------------------------------- 238 (312)
T 4ery_A 225 K---------CLKTYTGHKNEKY--------------------------------------------------------- 238 (312)
T ss_dssp E---------EEEEECSSCCSSS---------------------------------------------------------
T ss_pred c---------EEEEEEecCCceE---------------------------------------------------------
Confidence 2 2333333322110
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCC
Q 048801 510 GKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSAS 589 (1715)
Q Consensus 510 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~ 589 (1715)
.+......+++.+|++|+.||.|++||+.+++.+..+.+|...
T Consensus 239 -------------------------------------~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~ 281 (312)
T 4ery_A 239 -------------------------------------CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281 (312)
T ss_dssp -------------------------------------CCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSC
T ss_pred -------------------------------------EEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCc
Confidence 0112223457889999999999999999999999999999999
Q ss_pred eEEEEEccCCCcEEEEEe--CCCcEEEEECC
Q 048801 590 SYVLDVHPFNPRIAMSAG--YDGRTIVWDIW 618 (1715)
Q Consensus 590 V~sLafSP~dg~lLaSgs--~DGtI~VWDl~ 618 (1715)
|.+++|+| ++.++++++ .||+|+||+..
T Consensus 282 v~~~~~~p-~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 282 VISTACHP-TENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEEEECS-SSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEeecC-cCCceEEEEccCCccEEEecCC
Confidence 99999999 677888886 69999999864
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-30 Score=320.82 Aligned_cols=297 Identities=24% Similarity=0.315 Sum_probs=249.6
Q ss_pred EEEEecCCCCCe-EEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEE
Q 048801 277 CLASCRGHEGDI-TDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 277 ~l~tL~gHs~~V-tsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVr 355 (1715)
....+.+|...| +++.+ ++.+|++|+.||+|++||+.+++.+..+.+|.+.|++++|++++ +|++|+.||+|+
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~----~l~s~s~dg~i~ 186 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG----ILVSGSTDRTVR 186 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT----EEEEEETTSCEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC----EEEEEeCCCCEE
Confidence 445788998875 66666 57799999999999999999999999999999999999999986 799999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEc--cCCCeEEEecCCCeEEEEeCCCCCccC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYN--ANGTVFVTGSSDTFARVWSACKSSVED 433 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafS--pdG~~LatGs~DG~IrVWDl~t~~~~~ 433 (1715)
+||+.+++.+..+ ..|...|.+++|+ +++.+|++|+.||.|++||+.+.....
T Consensus 187 vwd~~~~~~~~~~-------------------------~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 187 VWDIKKGCCTHVF-------------------------EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp EEETTTTEEEEEE-------------------------CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred EEECCCCcEEEEE-------------------------CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence 9999988754433 2356779999998 578999999999999999998754321
Q ss_pred CCC--------------CceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEE
Q 048801 434 SEQ--------------PIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAI 499 (1715)
Q Consensus 434 ~~~--------------~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIr 499 (1715)
... ....+..+.+|...|.++...+ ..|++++.||.|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------------------------~~l~~~~~d~~i~ 293 (464)
T 3v7d_B 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG----------------------------NIVVSGSYDNTLI 293 (464)
T ss_dssp -----CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEET----------------------------TEEEEEETTSCEE
T ss_pred cccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCC----------------------------CEEEEEeCCCeEE
Confidence 100 0112456778888888774432 6899999999999
Q ss_pred EEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce
Q 048801 500 IWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL 579 (1715)
Q Consensus 500 IWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~ 579 (1715)
+||+.+++ ....+.+|...|.+++|+|++.+|++|+.||.|++||+.++++
T Consensus 294 vwd~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~ 344 (464)
T 3v7d_B 294 VWDVAQMK-----------------------------CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL 344 (464)
T ss_dssp EEETTTTE-----------------------------EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred EEECCCCc-----------------------------EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Confidence 99998643 2334566888999999999999999999999999999999999
Q ss_pred EEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 580 VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 580 l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
+..+.+|...|.+++|+ +.+|++|+.||.|++||+.++.....+. +...+..++|++++.+|++++ ||.|+|||+
T Consensus 345 ~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~ 419 (464)
T 3v7d_B 345 MYTLQGHTALVGLLRLS---DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNL 419 (464)
T ss_dssp EEEECCCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEET
T ss_pred EEEEeCCCCcEEEEEEc---CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEEC
Confidence 99999999999999996 4789999999999999999988777765 556777889999999999998 899999999
Q ss_pred CCCcccc
Q 048801 660 GQGESQK 666 (1715)
Q Consensus 660 ~tGe~~k 666 (1715)
.+|+.+.
T Consensus 420 ~~g~~~~ 426 (464)
T 3v7d_B 420 RSGKLVH 426 (464)
T ss_dssp TTCCEEE
T ss_pred CCCcEEe
Confidence 9998764
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=308.06 Aligned_cols=297 Identities=13% Similarity=0.084 Sum_probs=240.0
Q ss_pred eEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---EEEEecCCCCCeEEEEECCCCC-EEEEEeCCCeeE
Q 048801 235 NIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF---CLASCRGHEGDITDLAVSSNNT-LVASASNDFVIR 310 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk---~l~tL~gHs~~VtsLafSpDg~-lLASGS~DGtIr 310 (1715)
.+....+|.+.|++++|+|++.+|++|+.||.|+||++.++. ....+.+|...|++++|+|+++ +|++|+.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred ceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 344557899999999999999999999999999999998887 3455668999999999999999 999999999999
Q ss_pred EEEC-CCCCceEEEeC--CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC---------CCCcceecCCCCCCCcc
Q 048801 311 VWRL-PDGLPISVLRG--HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY---------SQYSPRIYLPKPPDAIT 378 (1715)
Q Consensus 311 VWDl-~tg~~l~~L~g--H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t---------g~~l~~i~~~~~~~~i~ 378 (1715)
+||+ .++. ...+.+ |...|++++|+| +. +|++++.|+.|++||+.+ ++.+..+
T Consensus 83 ~wd~~~~~~-~~~~~~~~~~~~v~~l~~~~-~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---------- 147 (342)
T 1yfq_A 83 KVDLIGSPS-FQALTNNEANLGICRICKYG-DD---KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT---------- 147 (342)
T ss_dssp EECSSSSSS-EEECBSCCCCSCEEEEEEET-TT---EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS----------
T ss_pred EEEeccCCc-eEeccccCCCCceEEEEeCC-CC---EEEEEcCCCeEEEEcccccccccccccCCeeeEE----------
Confidence 9999 7765 477888 999999999999 66 899999999999999875 3322111
Q ss_pred CccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCC-CCccCCCCCceeeeeecCCCCCeeEEEEc
Q 048801 379 GKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACK-SSVEDSEQPIHELDVLSGHENDVNYVQFS 457 (1715)
Q Consensus 379 g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t-~~~~~~~~~~~~l~~l~gH~~~V~sLafs 457 (1715)
.+...|.+++|++++ |++++.++.|++||+.+ ... ........|...|.+++|+
T Consensus 148 ----------------~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~i~~i~~~ 202 (342)
T 1yfq_A 148 ----------------KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD-------NGTIEESGLKYQIRDVALL 202 (342)
T ss_dssp ----------------SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC-------CCEEEECSCSSCEEEEEEC
T ss_pred ----------------eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc-------cceeeecCCCCceeEEEEC
Confidence 146679999999987 88999999999999986 421 1223445788899999999
Q ss_pred c-CcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCC--ccCcccccccccccccCCCCCCCCCCCC
Q 048801 458 G-CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR--RSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 458 p-dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
| ++ ..|++++.||.|++|++... ..... ....+....
T Consensus 203 ~~~~--------------------------~~l~~~~~dg~i~i~~~~~~~~~~~~~-----~~~~~~~~~--------- 242 (342)
T 1yfq_A 203 PKEQ--------------------------EGYACSSIDGRVAVEFFDDQGDDYNSS-----KRFAFRCHR--------- 242 (342)
T ss_dssp SGGG--------------------------CEEEEEETTSEEEEEECCTTCCSTTCT-----TCEEEECCC---------
T ss_pred CCCC--------------------------CEEEEEecCCcEEEEEEcCCCcccccc-----cceeeeccc---------
Confidence 9 76 79999999999999999864 10000 000000000
Q ss_pred CCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecC-CCCeEEEEEccCCCcEEEEEeCCCc-E
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH-SASSYVLDVHPFNPRIAMSAGYDGR-T 612 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH-~~~V~sLafSP~dg~lLaSgs~DGt-I 612 (1715)
....-..|...|.+++|+|++++|++|+.||.|++||+.+++++..+.+| ...|.+++ | ++.+|++|+.||. .
T Consensus 243 --~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~-~~~~l~s~s~Dg~~~ 317 (342)
T 1yfq_A 243 --LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C-SDNILCLATSDDTFK 317 (342)
T ss_dssp --CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-CSSEEEEEEECTHHH
T ss_pred --ccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-CCCeEEEEecCCccc
Confidence 00001134558999999999999999999999999999999999999998 99999999 7 7889999999998 5
Q ss_pred EEEE
Q 048801 613 IVWD 616 (1715)
Q Consensus 613 ~VWD 616 (1715)
+.|.
T Consensus 318 ~~~~ 321 (342)
T 1yfq_A 318 TNAA 321 (342)
T ss_dssp HCSS
T ss_pred cccc
Confidence 5555
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-30 Score=308.23 Aligned_cols=296 Identities=17% Similarity=0.264 Sum_probs=230.1
Q ss_pred CCCCCceeeeeeccccC-cccccCCCCcccccccccccCccccc-----cceeEEEEcCCCCCeEEEEEcCCCCEEEEEe
Q 048801 189 HMQADQVHGLSLREIGG-GFKKHHRAPSVCSACYAIAKPSTMVQ-----KMQNIKKLRGHRDAVYCAIFDRSGRFVITGS 262 (1715)
Q Consensus 189 ~~~~d~V~~ls~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS 262 (1715)
..|...|..+.+.+.+. .+..+.... ....|.+. ...++..|.+|...|++++|+|+|++|++|+
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~---------~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDK---------TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTS---------EEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ccccceEEEEEccCCCccEEEEecCCc---------cEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence 35778888888876442 233322222 22222221 2356788999999999999999999999999
Q ss_pred CCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCC--
Q 048801 263 DDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPS-- 340 (1715)
Q Consensus 263 ~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~-- 340 (1715)
.|++|+|||+.+++.+..+.+|...|.+++|+|++.+|++|+.|++|+|||+. +.++..+.+|...|.+++|+|...
T Consensus 85 ~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~ 163 (319)
T 3frx_A 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKAD 163 (319)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC----
T ss_pred CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCC
Confidence 99999999999999999999999999999999999999999999999999985 667888999999999999999642
Q ss_pred -cceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC
Q 048801 341 -AIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT 419 (1715)
Q Consensus 341 -~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG 419 (1715)
...+|++++.|+.|++||+.+.+....+ ..|...|.+++|+|+|.+|++|+.||
T Consensus 164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-------------------------~~h~~~v~~~~~sp~g~~l~s~~~dg 218 (319)
T 3frx_A 164 DDSVTIISAGNDKMVKAWNLNQFQIEADF-------------------------IGHNSNINTLTASPDGTLIASAGKDG 218 (319)
T ss_dssp --CCEEEEEETTSCEEEEETTTTEEEEEE-------------------------CCCCSCEEEEEECTTSSEEEEEETTC
T ss_pred CCccEEEEEeCCCEEEEEECCcchhheee-------------------------cCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 1127999999999999999876543322 23567899999999999999999999
Q ss_pred eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEE
Q 048801 420 FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAI 499 (1715)
Q Consensus 420 ~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIr 499 (1715)
.|+|||+.+++ .+..+.. ...|.+++|+|++ ..|++++ ++.++
T Consensus 219 ~i~iwd~~~~~---------~~~~~~~-~~~v~~~~~sp~~--------------------------~~la~~~-~~~i~ 261 (319)
T 3frx_A 219 EIMLWNLAAKK---------AMYTLSA-QDEVFSLAFSPNR--------------------------YWLAAAT-ATGIK 261 (319)
T ss_dssp EEEEEETTTTE---------EEEEEEC-CSCEEEEEECSSS--------------------------SEEEEEE-TTEEE
T ss_pred eEEEEECCCCc---------EEEEecC-CCcEEEEEEcCCC--------------------------CEEEEEc-CCCcE
Confidence 99999998743 3455554 4589999999986 5666665 45699
Q ss_pred EEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC
Q 048801 500 IWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG 577 (1715)
Q Consensus 500 IWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg 577 (1715)
+|++.......... .........+...+.+++|+|||++|++|+.|+.|+|||+.++
T Consensus 262 v~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 262 VFSLDPQYLVDDLR---------------------PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEETTEEEEEEEC---------------------CCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEeCcCeeeeccC---------------------ccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 99987643221110 0000112234567899999999999999999999999998654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=7e-31 Score=324.69 Aligned_cols=298 Identities=20% Similarity=0.356 Sum_probs=240.9
Q ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC
Q 048801 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD 316 (1715)
Q Consensus 237 ~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t 316 (1715)
....+|...|+|++| ++++|++|+.||.|+|||+.+++.+..+.+|.+.|++++| ++.+|++|+.||+|+|||+.+
T Consensus 127 ~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred ecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence 334567888999888 7899999999999999999999999999999999999999 788999999999999999999
Q ss_pred CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC
Q 048801 317 GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396 (1715)
Q Consensus 317 g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h 396 (1715)
++.+..+.+|...|.+++|+++ +|++|+.||.|++||+.++....... ....|
T Consensus 203 ~~~~~~~~~h~~~v~~l~~~~~-----~l~s~s~dg~i~vwd~~~~~~~~~~~----------------------~~~~~ 255 (435)
T 1p22_A 203 GEMLNTLIHHCEAVLHLRFNNG-----MMVTCSKDRSIAVWDMASPTDITLRR----------------------VLVGH 255 (435)
T ss_dssp CCEEEEECCCCSCEEEEECCTT-----EEEEEETTSCEEEEECSSSSCCEEEE----------------------EECCC
T ss_pred CcEEEEEcCCCCcEEEEEEcCC-----EEEEeeCCCcEEEEeCCCCCCceeee----------------------EecCC
Confidence 9999999999999999999753 79999999999999998766432111 12335
Q ss_pred CcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccc
Q 048801 397 SHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476 (1715)
Q Consensus 397 ~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~ 476 (1715)
...|.+++| ++.+|++|+.||.|++||+.++ ..+..+.+|...|.++.|.+
T Consensus 256 ~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~------------------ 306 (435)
T 1p22_A 256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC---------EFVRTLNGHKRGIACLQYRD------------------ 306 (435)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEEET------------------
T ss_pred CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC---------cEEEEEcCCCCcEEEEEeCC------------------
Confidence 677999999 7889999999999999999875 34677889999999999953
Q ss_pred ccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC
Q 048801 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD 556 (1715)
Q Consensus 477 ~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD 556 (1715)
..|++|+.||.|++||+.++. ....+.+|...|.+++| +
T Consensus 307 ----------~~l~~g~~dg~i~iwd~~~~~-----------------------------~~~~~~~h~~~v~~~~~--~ 345 (435)
T 1p22_A 307 ----------RLVVSGSSDNTIRLWDIECGA-----------------------------CLRVLEGHEELVRCIRF--D 345 (435)
T ss_dssp ----------TEEEEEETTSCEEEEETTTCC-----------------------------EEEEECCCSSCEEEEEC--C
T ss_pred ----------CEEEEEeCCCeEEEEECCCCC-----------------------------EEEEEeCCcCcEEEEEe--c
Confidence 689999999999999998643 23445668889999999 7
Q ss_pred CCEEEEEecCCeEEEEECCCCc---------eEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE
Q 048801 557 NRFVLAAIMDCRICVWNAVDGS---------LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 557 G~~LaTgs~DGtI~IWDl~sg~---------~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~ 627 (1715)
+.+|++|+.||.|+|||+.++. ++..+.+|.+.|++++| ++.+|++|+.||+|+|||+.++.......
T Consensus 346 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 422 (435)
T 1p22_A 346 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---DEFQIVSSSHDDTILIWDFLNDPAAQAEP 422 (435)
T ss_dssp SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE---CSSCEEECCSSSEEEEEC-----------
T ss_pred CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe---CCCEEEEEeCCCEEEEEECCCCCCcccCC
Confidence 8999999999999999997766 88999999999999999 45778999999999999998776554443
Q ss_pred cccceEEEEEEc
Q 048801 628 IGRFKLVDGKFS 639 (1715)
Q Consensus 628 ~h~~~V~svafS 639 (1715)
...+...+.|.
T Consensus 423 -~~~~~~~~~~~ 433 (435)
T 1p22_A 423 -PRSPSRTYTYI 433 (435)
T ss_dssp ------------
T ss_pred -CCCCccceeee
Confidence 22344444443
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.7e-32 Score=325.56 Aligned_cols=307 Identities=10% Similarity=0.055 Sum_probs=232.1
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC--CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEe
Q 048801 281 CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG--LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358 (1715)
Q Consensus 281 L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg--~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWD 358 (1715)
+..|.+.|++++|+|++++||+|+.|+.|+|||+.++ ..+..+.+|...|++++|+|++. +|++++.||+|++||
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~---~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSN---RIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTC---CEEEEETTSSEEEC-
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCC---EEEEEeCCCeEEEEE
Confidence 4446789999999999999999999999999999988 77888999999999999999987 899999999999999
Q ss_pred cCCCC-CcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCC
Q 048801 359 ARYSQ-YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQP 437 (1715)
Q Consensus 359 l~tg~-~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~ 437 (1715)
+.++. ..... ....|...|.+++|+|++.+|++|+.|+.|++||+.++..
T Consensus 84 ~~~~~~~~~~~-----------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------ 134 (377)
T 3dwl_C 84 KRPDGTWKQTL-----------------------VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND------ 134 (377)
T ss_dssp -----CCCCEE-----------------------ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----------
T ss_pred cCCCCceeeee-----------------------EecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc------
Confidence 98765 11111 1223567899999999999999999999999999986531
Q ss_pred ceeeeeecC-CCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccc
Q 048801 438 IHELDVLSG-HENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWT 516 (1715)
Q Consensus 438 ~~~l~~l~g-H~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~ 516 (1715)
......+.+ |...|.+++|+|++ .+|++++.||.|++||+.+........
T Consensus 135 ~~~~~~~~~~h~~~v~~~~~~~~~--------------------------~~l~~~~~d~~i~iwd~~~~~~~~~~~--- 185 (377)
T 3dwl_C 135 WWVSKHLKRPLRSTILSLDWHPNN--------------------------VLLAAGCADRKAYVLSAYVRDVDAKPE--- 185 (377)
T ss_dssp CCCCEEECSSCCSCEEEEEECTTS--------------------------SEEEEEESSSCEEEEEECCSSCC-CCC---
T ss_pred ceeeeEeecccCCCeEEEEEcCCC--------------------------CEEEEEeCCCEEEEEEEEecccCCCcc---
Confidence 123456666 99999999999986 799999999999999997543211100
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce----EEEEecCCCCeEE
Q 048801 517 RAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL----VHSLTGHSASSYV 592 (1715)
Q Consensus 517 ~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~----l~tL~gH~~~V~s 592 (1715)
..........+.....+ .|...|.+++|+|+|++|++++.|+.|+|||+.+++. +..+.+|...|.+
T Consensus 186 --------~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 256 (377)
T 3dwl_C 186 --------ASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRS 256 (377)
T ss_dssp --------SCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEE
T ss_pred --------ccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEE
Confidence 00000000112233344 8889999999999999999999999999999999988 8889999999999
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECCCCc--------------------------e-E---------EEEE---------
Q 048801 593 LDVHPFNPRIAMSAGYDGRTIVWDIWEGT--------------------------P-I---------RIYE--------- 627 (1715)
Q Consensus 593 LafSP~dg~lLaSgs~DGtI~VWDl~tgk--------------------------~-l---------~tl~--------- 627 (1715)
++|+| ++.+|++|+.|+.+ +|+...+. . . ..+.
T Consensus 257 ~~~s~-~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 334 (377)
T 3dwl_C 257 LLWAN-ESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQ 334 (377)
T ss_dssp EEEEE-TTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------------------
T ss_pred EEEcC-CCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccc
Confidence 99999 77888888766655 67654211 0 0 1111
Q ss_pred -------cccceEEEEEEcCCC-C---EEEEEeCCCeEEEEEC
Q 048801 628 -------IGRFKLVDGKFSPDG-T---SIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 628 -------~h~~~V~svafSPDG-~---~LAsgs~DG~I~IWdl 659 (1715)
.|...|+++++.++. . .|++|+.||.|+|||+
T Consensus 335 ~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 335 SISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp --CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 278889999876543 3 6999999999999985
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-30 Score=306.33 Aligned_cols=262 Identities=21% Similarity=0.372 Sum_probs=213.8
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC--CcEEEEecCCCCCeEEEEECCC--CCEEEEEeCCCeeEE
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET--AFCLASCRGHEGDITDLAVSSN--NTLVASASNDFVIRV 311 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~t--gk~l~tL~gHs~~VtsLafSpD--g~lLASGS~DGtIrV 311 (1715)
+..+.+|.+.|++++|+|+|++||||+.|++|+||++.+ ++++.++.+|.+.|++++|+++ +.+||+|+.|++|+|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 346789999999999999999999999999999999974 4778999999999999999864 899999999999999
Q ss_pred EECCCCC--ceEEEeCCCCCeEEEEecCC--CCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 312 WRLPDGL--PISVLRGHTGAVTAIAFSPR--PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 312 WDl~tg~--~l~~L~gH~~~VtsLafSPd--g~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
||+.++. .+..+.+|...|.+++|+|+ +. +|++++.||+|++||+..+.....
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~---~l~s~s~d~~v~~wd~~~~~~~~~-------------------- 138 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP---MLLVASSDGKVSVVEFKENGTTSP-------------------- 138 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCS---EEEEEETTSEEEEEEBCSSSCBCC--------------------
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCc---EEEEEECCCcEEEEEecCCCceee--------------------
Confidence 9998874 66778899999999999997 55 899999999999999976532111
Q ss_pred CCCCCCCCCCcceeEEEEccC-------------CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEE
Q 048801 388 GPSSSNGLQSHQILCCAYNAN-------------GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV 454 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSpd-------------G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sL 454 (1715)
.....|...|.+++|+|+ +++|++|+.|+.|+|||+.++. ........+.+|...|.++
T Consensus 139 ---~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~-----~~~~~~~~l~~H~~~V~~v 210 (297)
T 2pm7_B 139 ---IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-----QTYVLESTLEGHSDWVRDV 210 (297)
T ss_dssp ---EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT-----TEEEEEEEECCCSSCEEEE
T ss_pred ---eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC-----ceEEEEEEecCCCCceEEE
Confidence 112345677999999997 5799999999999999997642 1122456788999999999
Q ss_pred EEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 455 QFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 455 afspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
+|+|++. ...+|++++.|++|+|||+.+.... +..
T Consensus 211 ~~sp~~~-----------------------~~~~las~s~D~~v~iWd~~~~~~~-----~~~----------------- 245 (297)
T 2pm7_B 211 AWSPTVL-----------------------LRSYMASVSQDRTCIIWTQDNEQGP-----WKK----------------- 245 (297)
T ss_dssp EECCCCS-----------------------SSEEEEEEETTSCEEEEEESSTTSC-----CEE-----------------
T ss_pred EECCCCC-----------------------CceEEEEEECCCcEEEEEeCCCCCc-----cce-----------------
Confidence 9999730 0268999999999999998753200 000
Q ss_pred CCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECC
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV 575 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~ 575 (1715)
.......|...|.+++|+|+|++|++++.|+.|+||+..
T Consensus 246 --~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 246 --TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp --EESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred --eeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 000113456789999999999999999999999999975
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-30 Score=301.68 Aligned_cols=266 Identities=20% Similarity=0.255 Sum_probs=213.5
Q ss_pred EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC--CCceEEEeCCCCCeEEEEecCC--CCcceEEEEecCCCc
Q 048801 278 LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD--GLPISVLRGHTGAVTAIAFSPR--PSAIYQLLSSSDDGT 353 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t--g~~l~~L~gH~~~VtsLafSPd--g~~~~~LaSgS~DGt 353 (1715)
+..+.+|...|++++|+|+|++||+|+.|++|+||++.+ ++++.++.+|.+.|++++|+++ +. +|++|+.||+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~---~l~s~s~D~~ 78 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT---ILASCSYDGK 78 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCS---EEEEEETTTE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCC---EEEEEcCCCE
Confidence 346789999999999999999999999999999999974 4678999999999999999864 55 8999999999
Q ss_pred EEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC--CCeEEEecCCCeEEEEeCCCCCc
Q 048801 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN--GTVFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 354 VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd--G~~LatGs~DG~IrVWDl~t~~~ 431 (1715)
|++||+.++...... ....|...|.+++|+|+ |.+|++|+.||.|++||+.+...
T Consensus 79 v~iWd~~~~~~~~~~-----------------------~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~ 135 (297)
T 2pm7_B 79 VMIWKEENGRWSQIA-----------------------VHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT 135 (297)
T ss_dssp EEEEEBSSSCBCCCE-----------------------EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC
T ss_pred EEEEEcCCCceEEEE-----------------------EeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc
Confidence 999999876421111 11235677999999997 89999999999999999976421
Q ss_pred cCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcc
Q 048801 432 EDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGK 511 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~ 511 (1715)
.....+.+|...|.+++|+|++.. . ++.
T Consensus 136 -------~~~~~~~~h~~~v~~~~~~p~~~~-------------------------~------~~~-------------- 163 (297)
T 2pm7_B 136 -------TSPIIIDAHAIGVNSASWAPATIE-------------------------E------DGE-------------- 163 (297)
T ss_dssp -------BCCEEEECCSSCEEEEEECCCC---------------------------------------------------
T ss_pred -------eeeeeeecccCccceEeecCCccc-------------------------c------ccc--------------
Confidence 113456789999999999986410 0 000
Q ss_pred cccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc----eEEEEecCC
Q 048801 512 VGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS----LVHSLTGHS 587 (1715)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~----~l~tL~gH~ 587 (1715)
....+++++|++|+.|++|+|||+.++. +...+.+|.
T Consensus 164 ---------------------------------------~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~ 204 (297)
T 2pm7_B 164 ---------------------------------------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS 204 (297)
T ss_dssp ---------------------------------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred ---------------------------------------CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCC
Confidence 0012357789999999999999998776 667889999
Q ss_pred CCeEEEEEccCC--CcEEEEEeCCCcEEEEECCCCc--e-EEEE--EcccceEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 588 ASSYVLDVHPFN--PRIAMSAGYDGRTIVWDIWEGT--P-IRIY--EIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 588 ~~V~sLafSP~d--g~lLaSgs~DGtI~VWDl~tgk--~-l~tl--~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
..|.+++|+|++ +.+|++|+.||+|+|||+.++. . ...+ ..+...|.+++|+|+|++||+++.||.|+||+..
T Consensus 205 ~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 205 DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 999999999954 5899999999999999997753 1 2223 3466789999999999999999999999999975
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=307.18 Aligned_cols=312 Identities=18% Similarity=0.199 Sum_probs=239.2
Q ss_pred ccceeEEEEcCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEeCCC-CcEE-EEecCCCCCeEEEEECCCCCEEEEEeC
Q 048801 231 QKMQNIKKLRGHRDAVYCAIFDRS---GRFVITGSDDRLVKIWSMET-AFCL-ASCRGHEGDITDLAVSSNNTLVASASN 305 (1715)
Q Consensus 231 ~~~k~l~~L~GH~~~Vt~VafSpD---G~~LaTGS~DGtIrIWDl~t-gk~l-~tL~gHs~~VtsLafSpDg~lLASGS~ 305 (1715)
...+.+..+.+|.+.|+|++|+|+ |++|++|+.||.|+||++.+ +..+ ..+.+|...|++++|+|++++|++|+.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 345677889999999999999999 69999999999999999987 5555 788999999999999999999999999
Q ss_pred CCeeEEEECCCCCceEEEeCCCCCeEEEEe--cCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCC
Q 048801 306 DFVIRVWRLPDGLPISVLRGHTGAVTAIAF--SPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383 (1715)
Q Consensus 306 DGtIrVWDl~tg~~l~~L~gH~~~VtsLaf--SPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~ 383 (1715)
||.|+|||+.++..+. +.+|...|++++| ++++. +|++++.||.|++||+.+++.+..+..
T Consensus 107 dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~------------- 169 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYS---CVMTGSWDKTLKFWDTRSSNPMMVLQL------------- 169 (368)
T ss_dssp TSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCE---EEEEEETTSEEEEECSSCSSCSEEEEC-------------
T ss_pred CCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCC---EEEEccCCCcEEEEECCCCcEEEEEec-------------
Confidence 9999999999988766 5569999999999 77775 899999999999999998876655432
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccc
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVAS 463 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as 463 (1715)
...+.++.+. +..+++++.++.+.+|++..... ........+...+.++.+.+...
T Consensus 170 -------------~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-- 225 (368)
T 3mmy_A 170 -------------PERCYCADVI--YPMAVVATAERGLIVYQLENQPS-------EFRRIESPLKHQHRCVAIFKDKQ-- 225 (368)
T ss_dssp -------------SSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCE-------EEEECCCSCSSCEEEEEEEECTT--
T ss_pred -------------CCCceEEEec--CCeeEEEeCCCcEEEEEeccccc-------hhhhccccccCCCceEEEcccCC--
Confidence 1235566665 44788888999999999976421 11122223344566666655430
Q ss_pred cccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccC
Q 048801 464 RSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLP 543 (1715)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~ 543 (1715)
.....+++++.||.|++|++.......... .+.... ..........
T Consensus 226 --------------------~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~------~~~~~~--------~~~~~~~~~~ 271 (368)
T 3mmy_A 226 --------------------NKPTGFALGSIEGRVAIHYINPPNPAKDNF------TFKCHR--------SNGTNTSAPQ 271 (368)
T ss_dssp --------------------SCEEEEEEEETTSEEEEEESSCSCHHHHSE------EEECSE--------EC----CCCE
T ss_pred --------------------CCCCeEEEecCCCcEEEEecCCCCccccce------eeeeee--------cccccccccc
Confidence 012459999999999999998643100000 000000 0000011223
Q ss_pred CCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 544 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 544 h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
|...|++++|+|++++|++|+.||.|+|||+.+++++..+.+|...|++++|+| ++.+|++|+.|+..+.|++.
T Consensus 272 ~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 272 DIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNH-NGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp EECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECT-TSSCEEEEECCCSTTCGGGC
T ss_pred cccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECC-CCCeEEEEeccccccccccc
Confidence 344799999999999999999999999999999999999999999999999999 77888899988866655544
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=313.19 Aligned_cols=300 Identities=21% Similarity=0.396 Sum_probs=255.9
Q ss_pred ccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCC
Q 048801 218 SACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNN 297 (1715)
Q Consensus 218 ~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg 297 (1715)
++..+.....|.+.+.+.+..+.+|.+.|++++|+ +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +
T Consensus 134 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~ 209 (445)
T 2ovr_B 134 SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--E 209 (445)
T ss_dssp EEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--T
T ss_pred EEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--C
Confidence 33344444455666788899999999999999998 6799999999999999999999999999999999999995 6
Q ss_pred CEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCc
Q 048801 298 TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAI 377 (1715)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i 377 (1715)
.+|++|+.||+|++||+.+++.+..+.+|...|.+++| ++. +|++++.||.|++||+.+++.+..+.
T Consensus 210 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~-------- 276 (445)
T 2ovr_B 210 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGR---RVVSGAYDFMVKVWDPETETCLHTLQ-------- 276 (445)
T ss_dssp TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSS---CEEEEETTSCEEEEEGGGTEEEEEEC--------
T ss_pred CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCC---EEEEEcCCCEEEEEECCCCcEeEEec--------
Confidence 78999999999999999999999999999999999999 444 79999999999999998876544431
Q ss_pred cCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEc
Q 048801 378 TGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS 457 (1715)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafs 457 (1715)
.|...|.+++| ++.+|++|+.||.|++||+.+++ .+..+.+|...+.++.+.
T Consensus 277 -----------------~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~---------~~~~~~~~~~~v~~~~~~ 328 (445)
T 2ovr_B 277 -----------------GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN---------CIHTLTGHQSLTSGMELK 328 (445)
T ss_dssp -----------------CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC---------EEEEECCCCSCEEEEEEE
T ss_pred -----------------CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC---------EEEEEcCCcccEEEEEEe
Confidence 24567999999 88999999999999999998753 467788999999998886
Q ss_pred cCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC
Q 048801 458 GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537 (1715)
Q Consensus 458 pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 537 (1715)
+ +.|++|+.||.|++||+.+++....+
T Consensus 329 ~----------------------------~~l~~~~~dg~i~vwd~~~~~~~~~~------------------------- 355 (445)
T 2ovr_B 329 D----------------------------NILVSGNADSTVKIWDIKTGQCLQTL------------------------- 355 (445)
T ss_dssp T----------------------------TEEEEEETTSCEEEEETTTCCEEEEE-------------------------
T ss_pred C----------------------------CEEEEEeCCCeEEEEECCCCcEEEEE-------------------------
Confidence 4 58999999999999999865422111
Q ss_pred cccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEE-----ecCCCCeEEEEEccCCCcEEEEEeCCCc-
Q 048801 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL-----TGHSASSYVLDVHPFNPRIAMSAGYDGR- 611 (1715)
Q Consensus 538 ~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL-----~gH~~~V~sLafSP~dg~lLaSgs~DGt- 611 (1715)
.....|...|.+++|+ +.+|++|+.||.|+|||+.+++.+..+ .+|.+.|++++|+| ++.++++|+.||+
T Consensus 356 -~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~ 431 (445)
T 2ovr_B 356 -QGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTE 431 (445)
T ss_dssp -CSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSS
T ss_pred -ccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccCCCC
Confidence 0012367789999995 689999999999999999999999988 47889999999999 7899999999998
Q ss_pred ---EEEEECCC
Q 048801 612 ---TIVWDIWE 619 (1715)
Q Consensus 612 ---I~VWDl~t 619 (1715)
|.|||+..
T Consensus 432 ~~~l~v~df~~ 442 (445)
T 2ovr_B 432 ETKLLVLDFDV 442 (445)
T ss_dssp CCEEEEEECCC
T ss_pred ccEEEEEECCC
Confidence 99999864
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=315.59 Aligned_cols=288 Identities=11% Similarity=0.078 Sum_probs=222.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC-------cEEEEeCCCCcE----------EEEecCCCCCeEEEEECCCCCEEEEEe-
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDR-------LVKIWSMETAFC----------LASCRGHEGDITDLAVSSNNTLVASAS- 304 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DG-------tIrIWDl~tgk~----------l~tL~gHs~~VtsLafSpDg~lLASGS- 304 (1715)
.-+|+||+|+|||++|++||.|. .|+||++..+.. ...|.+|...|.+++++ +..+++|+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 45899999999999999998643 599999875421 23567899999888775 55677664
Q ss_pred ----------CCCeeEEEECCCCCceEEE---------eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCc
Q 048801 305 ----------NDFVIRVWRLPDGLPISVL---------RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365 (1715)
Q Consensus 305 ----------~DGtIrVWDl~tg~~l~~L---------~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l 365 (1715)
.|++|++|++..+.....+ ..+...+.+++|+|++... .+++++.|++|+|||+.+++.+
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~l-a~as~~~d~~i~iwd~~~~~~~ 170 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVA-AIASSKVPAIMRIIDPSDLTEK 170 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCE-EEEESCSSCEEEEEETTTTEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEE-EEEECCCCCEEEEeECCCCcEE
Confidence 4678999998765432211 1344568999999999832 3456678999999999988765
Q ss_pred ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec
Q 048801 366 PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS 445 (1715)
Q Consensus 366 ~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~ 445 (1715)
..+. |...|.+++|+|+|++|++++.++ +.+|+..++.. .......
T Consensus 171 ~~~~--------------------------~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~-------~~~~~~~ 216 (365)
T 4h5i_A 171 FEIE--------------------------TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSC-------IARKTDF 216 (365)
T ss_dssp EEEE--------------------------CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCE-------EEEECCC
T ss_pred EEeC--------------------------CCCceEEEEEccCCceEEecccee-EEEEEeccCcc-------eeeeecC
Confidence 4432 345699999999999999998655 55666554321 2233456
Q ss_pred CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC----eEEEEecCCCccCcccccccccccc
Q 048801 446 GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG----SAIIWIPRSRRSHGKVGRWTRAYHL 521 (1715)
Q Consensus 446 gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG----sIrIWDl~t~~~~~~~~~~~~~~~l 521 (1715)
+|...|.+++|+|++ ..+++++.|+ .+++|++.......
T Consensus 217 ~~~~~v~~v~fspdg--------------------------~~l~~~s~d~~~~~~i~~~~~~~~~~~~----------- 259 (365)
T 4h5i_A 217 DKNWSLSKINFIADD--------------------------TVLIAASLKKGKGIVLTKISIKSGNTSV----------- 259 (365)
T ss_dssp CTTEEEEEEEEEETT--------------------------EEEEEEEESSSCCEEEEEEEEETTEEEE-----------
T ss_pred CCCCCEEEEEEcCCC--------------------------CEEEEEecCCcceeEEeecccccceecc-----------
Confidence 788899999999987 7888888887 67888876432100
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEE-ecCCCCeEEEEEccCCC
Q 048801 522 KVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL-TGHSASSYVLDVHPFNP 600 (1715)
Q Consensus 522 ~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL-~gH~~~V~sLafSP~dg 600 (1715)
.....+..|...|++++|+|||++||+|+.|++|+|||+.+++++..+ .+|...|++|+|+| ++
T Consensus 260 --------------~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp-dg 324 (365)
T 4h5i_A 260 --------------LRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISP-DS 324 (365)
T ss_dssp --------------EEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECT-TS
T ss_pred --------------eeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECC-CC
Confidence 012345667889999999999999999999999999999999999885 79999999999999 88
Q ss_pred cEEEEEeCCCcEEEEECCC
Q 048801 601 RIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 601 ~lLaSgs~DGtI~VWDl~t 619 (1715)
++||||+.|++|+||++..
T Consensus 325 ~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 325 TYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp CEEEEEETTSEEEEEECCT
T ss_pred CEEEEEeCCCeEEEEEcCC
Confidence 9999999999999999964
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=311.02 Aligned_cols=287 Identities=15% Similarity=0.261 Sum_probs=237.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe--CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCC
Q 048801 287 DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR--GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQY 364 (1715)
Q Consensus 287 ~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~--gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~ 364 (1715)
.++.|+||+++ +||+|. |++|+|||+.+|+.+..+. +|...|++|+|+|++. +|++|+.||+|+|||+.+++.
T Consensus 107 y~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~---~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 107 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN---YLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS---EEEEEETTSCEEEEETTTTEE
T ss_pred cceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCC---EEEEEECCCeEEEEEcCCCcE
Confidence 45679999764 777775 8999999999999887765 6778899999999998 899999999999999998876
Q ss_pred cceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee
Q 048801 365 SPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL 444 (1715)
Q Consensus 365 l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l 444 (1715)
+..+ ..|...+.++++ ++.+|++|+.|+.+++|+.... ...+..+
T Consensus 182 ~~~~-------------------------~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~--------~~~~~~~ 226 (420)
T 4gga_A 182 LRNM-------------------------TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVA--------EHHVATL 226 (420)
T ss_dssp EEEE-------------------------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS--------SCEEEEE
T ss_pred EEEE-------------------------eCCCCceEEEee--CCCEEEEEeCCCceeEeeeccc--------ceeeEEe
Confidence 5443 224556777766 5779999999999999998754 2456778
Q ss_pred cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCC
Q 048801 445 SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVP 524 (1715)
Q Consensus 445 ~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~ 524 (1715)
.+|...+..+.|++++ ..+++++.||.+++|++.+++..
T Consensus 227 ~~h~~~~~~~~~~~~g--------------------------~~l~s~~~D~~v~i~~~~~~~~~--------------- 265 (420)
T 4gga_A 227 SGHSQEVCGLRWAPDG--------------------------RHLASGGNDNLVNVWPSAPGEGG--------------- 265 (420)
T ss_dssp ECCSSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEESSCCSSC---------------
T ss_pred cccccceeeeeecCCC--------------------------CeeeeeeccccceEEeecccccc---------------
Confidence 8999999999999986 79999999999999999864311
Q ss_pred CCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC-EEEE--EecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCc
Q 048801 525 PPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR-FVLA--AIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPR 601 (1715)
Q Consensus 525 ~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~-~LaT--gs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~ 601 (1715)
.........|...|.+++|+|++. ++++ |+.|++|+|||+.+++++..+..|. .+.++.|+|++..
T Consensus 266 ----------~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~-~v~~~~~~~~~~~ 334 (420)
T 4gga_A 266 ----------WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKE 334 (420)
T ss_dssp ----------SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS-CEEEEEEETTTTE
T ss_pred ----------ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc-ceeeeeecCCCCe
Confidence 112344567888999999999765 4444 3579999999999999999988664 5889999995554
Q ss_pred EEEEEe-CCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 602 IAMSAG-YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 602 lLaSgs-~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
++++++ .||.|+|||+.+++++..+.+|.+.|.+++|+|||++||+|+.||+|+||++.+....
T Consensus 335 lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 444333 7999999999999999999999999999999999999999999999999999765433
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-30 Score=315.43 Aligned_cols=324 Identities=14% Similarity=0.232 Sum_probs=234.9
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC-----------ceEEEeCCC------------CCeEEEEecCCCC
Q 048801 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL-----------PISVLRGHT------------GAVTAIAFSPRPS 340 (1715)
Q Consensus 284 Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~-----------~l~~L~gH~------------~~VtsLafSPdg~ 340 (1715)
|.+.|++++|+|+|.+||+|+.||.|+||++.++. .+..+.+|. ..|++++|+|++.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 67899999999999999999999999999999877 478889998 8899999999972
Q ss_pred cceEEEEecCCCcEEEEecCCCCCcceecCCCCCC-CccCccCCCCCCCC--------------CCCCCCCCcceeEEEE
Q 048801 341 AIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPD-AITGKSNVPSNNGP--------------SSSNGLQSHQILCCAY 405 (1715)
Q Consensus 341 ~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~-~i~g~~~~~~~~~~--------------~~~~~~h~~~Vtslaf 405 (1715)
.. +|++++.||+|++||+.++............. .............+ ......|...|.+++|
T Consensus 107 ~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 107 AA-QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SS-EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred cc-eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 11 79999999999999998654321111100000 00000000000000 0113468889999999
Q ss_pred ccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeee-------eecCCCCCeeEEEEccCccccccccccccccccccc
Q 048801 406 NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD-------VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 406 SpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~-------~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
+|++.+|++| .||.|++||+.+.. ..+. .+.+|...|.+++|+|++
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~------------------ 238 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITD--------RSFNIVDIKPANMEELTEVITAAEFHPNS------------------ 238 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEE--------EEEEEEECCCSSGGGCCCCEEEEEECSSC------------------
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCC--------ceeeeeecccccccccCcceEEEEECCCC------------------
Confidence 9999999999 79999999997421 1222 367899999999999975
Q ss_pred ccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC
Q 048801 479 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~ 558 (1715)
...|++|+.||.|++||++++...... ...+. ... .......+..|...|.+++|+|+|+
T Consensus 239 -------~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~--~~~--------~~~~~~~~~~~~~~v~~~~~s~~g~ 298 (447)
T 3dw8_B 239 -------CNTFVYSSSKGTIRLCDMRASALCDRH---SKLFE--EPE--------DPSNRSFFSEIISSISDVKFSHSGR 298 (447)
T ss_dssp -------TTEEEEEETTSCEEEEETTTCSSSCTT---CEEEC--CC-------------CCHHHHHTTCEEEEEECTTSS
T ss_pred -------CcEEEEEeCCCeEEEEECcCCccccce---eeEec--cCC--------CccccccccccCceEEEEEECCCCC
Confidence 369999999999999999875521100 00000 000 0000111223345899999999999
Q ss_pred EEEEEecCCeEEEEECCC-CceEEEEecCCCC---------------eEEEEEccCCCcEEEEEeCCCcEEEEECCCCce
Q 048801 559 FVLAAIMDCRICVWNAVD-GSLVHSLTGHSAS---------------SYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTP 622 (1715)
Q Consensus 559 ~LaTgs~DGtI~IWDl~s-g~~l~tL~gH~~~---------------V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~ 622 (1715)
+|++++. +.|+|||+.+ ++++..+.+|... +..++|+| ++.+|++|+.||.|+|||+.+++.
T Consensus 299 ~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 299 YMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp EEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECT-TSSEEEEECSTTEEEEEETTTCCE
T ss_pred EEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECC-CCCEEEEeccCCEEEEEEcCCCcc
Confidence 9999998 9999999997 8899999988642 33489999 778889999999999999999887
Q ss_pred EEEEEcc---------------------------------cceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 623 IRIYEIG---------------------------------RFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 623 l~tl~~h---------------------------------~~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
+. +..+ ...|..++|+|+|.+||+++.++ +++|..
T Consensus 377 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 377 IT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp EE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 64 2222 34588899999999999998865 778764
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=293.48 Aligned_cols=283 Identities=15% Similarity=0.227 Sum_probs=232.1
Q ss_pred eEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe--CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCc
Q 048801 288 ITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR--GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365 (1715)
Q Consensus 288 VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~--gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l 365 (1715)
+++|+||+++ +||+| .|++|+|||+.+++++..+. +|...|++++|+|++. +|++|+.||+|++||+.+++.+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~---~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN---YLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS---EEEEEETTSEEEEEETTTTEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCC---EEEEEECCCcEEEeecCCceeE
Confidence 4679999886 77776 48999999999999888775 6778899999999998 8999999999999999988765
Q ss_pred ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec
Q 048801 366 PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS 445 (1715)
Q Consensus 366 ~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~ 445 (1715)
..+. .|...+.+ +++++.++++|+.++.+++|+.... ...+..+.
T Consensus 103 ~~~~-------------------------~h~~~~~~--~~~~~~~l~s~~~~~~~~~~~~~~~--------~~~~~~~~ 147 (318)
T 4ggc_A 103 RNMT-------------------------SHSARVGS--LSWNSYILSSGSRSGHIHHHDVRVA--------EHHVATLS 147 (318)
T ss_dssp EEEE-------------------------CCSSCEEE--EEEETTEEEEEETTSEEEEEETTSS--------SCEEEEEE
T ss_pred EEec-------------------------CccceEEE--eecCCCEEEEEecCCceEeeecCCC--------ceeEEEEc
Confidence 5432 12333444 5556789999999999999998764 23567788
Q ss_pred CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCC
Q 048801 446 GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPP 525 (1715)
Q Consensus 446 gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~ 525 (1715)
+|...+..+.+.+++ ..|++++.||.|++||+.+++...
T Consensus 148 ~~~~~~~~~~~~~~~--------------------------~~l~s~~~d~~i~iwd~~~~~~~~--------------- 186 (318)
T 4ggc_A 148 GHSQEVCGLRWAPDG--------------------------RHLASGGNDNLVNVWPSAPGEGGW--------------- 186 (318)
T ss_dssp CCSSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEESSCBTTBS---------------
T ss_pred CccCceEEEEEcCCC--------------------------CEEEEEecCcceeEEECCCCcccc---------------
Confidence 999999999999986 799999999999999998754211
Q ss_pred CCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEE---EEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcE
Q 048801 526 PPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFV---LAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRI 602 (1715)
Q Consensus 526 ~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~L---aTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~l 602 (1715)
........+...|.+++++|++..+ ++++.++.|++||........... +...+..+.|+|.+..+
T Consensus 187 ----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 255 (318)
T 4ggc_A 187 ----------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKEL 255 (318)
T ss_dssp ----------CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEE
T ss_pred ----------cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccce
Confidence 1223345567789999999977644 356778999999998887766654 66779999999955554
Q ss_pred EEE-EeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 603 AMS-AGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 603 LaS-gs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
+++ |+.||.|+|||+.+++++..+.+|.+.|++++|+|||++||+|+.||.|+|||+.+.
T Consensus 256 ~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 256 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 443 347999999999999999999999999999999999999999999999999998664
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=308.48 Aligned_cols=260 Identities=22% Similarity=0.321 Sum_probs=206.0
Q ss_pred EEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--EEEEecCCCCCeEEEEECC--CCCEEEEEeCCCeeEEEE
Q 048801 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF--CLASCRGHEGDITDLAVSS--NNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 238 ~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk--~l~tL~gHs~~VtsLafSp--Dg~lLASGS~DGtIrVWD 313 (1715)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+..+.+|.+.|++++|++ ++.+||+|+.|++|+|||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 467999999999999999999999999999999998874 5678999999999999986 489999999999999999
Q ss_pred CCCCC--ceEEEeCCCCCeEEEEecCC--CCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCC
Q 048801 314 LPDGL--PISVLRGHTGAVTAIAFSPR--PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 314 l~tg~--~l~~L~gH~~~VtsLafSPd--g~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
+.++. .+..+.+|...|++++|+|+ +. +|++++.||+|++||+..+......
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~---~lasgs~D~~i~lwd~~~~~~~~~~--------------------- 143 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGL---ILACGSSDGAISLLTYTGEGQWEVK--------------------- 143 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCS---CEEEECSSSCEEEEEECSSSCEEEC---------------------
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCc---EEEEEcCCCCEEEEecCCCCCccee---------------------
Confidence 98874 56678899999999999998 44 7999999999999999765311100
Q ss_pred CCCCCCCCcceeEEEEccC-----------------CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCee
Q 048801 390 SSSNGLQSHQILCCAYNAN-----------------GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVN 452 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpd-----------------G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~ 452 (1715)
.....|...|.+++|+|+ +.+|++|+.|+.|+|||+.... ....+..+.+|...|.
T Consensus 144 -~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~------~~~~~~~l~~h~~~V~ 216 (316)
T 3bg1_A 144 -KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG------QWKEEQKLEAHSDWVR 216 (316)
T ss_dssp -CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS------CEEEEECCBCCSSCEE
T ss_pred -eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC------ccceeeecccCCCceE
Confidence 112235566888899887 4789999999999999996421 1235667889999999
Q ss_pred EEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCC
Q 048801 453 YVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQP 532 (1715)
Q Consensus 453 sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~ 532 (1715)
+++|+|++. .....|++++.||+|++|++.+....
T Consensus 217 ~v~~sp~~~----------------------~~~~~las~s~D~~v~iw~~~~~~~~----------------------- 251 (316)
T 3bg1_A 217 DVAWAPSIG----------------------LPTSTIASCSQDGRVFIWTCDDASSN----------------------- 251 (316)
T ss_dssp EEECCCCSS----------------------CSCCEEEEEETTCEEEEEECSSTTCC-----------------------
T ss_pred EEEecCCCC----------------------CCCceEEEEcCCCeEEEEEccCcccc-----------------------
Confidence 999999740 01258999999999999998752100
Q ss_pred CCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECC
Q 048801 533 PRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV 575 (1715)
Q Consensus 533 ~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~ 575 (1715)
......+..|...|.+++|+|+|.+|++|+.|++|+||+..
T Consensus 252 --~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 252 --TWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp --CCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred --chhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 00011233467789999999999999999999999999975
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=312.36 Aligned_cols=292 Identities=13% Similarity=0.109 Sum_probs=223.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCC-------eeEEEECCCCCc----------eEEEeCCCCCeEEEEecCCCCcceEEEE
Q 048801 285 EGDITDLAVSSNNTLVASASNDF-------VIRVWRLPDGLP----------ISVLRGHTGAVTAIAFSPRPSAIYQLLS 347 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DG-------tIrVWDl~tg~~----------l~~L~gH~~~VtsLafSPdg~~~~~LaS 347 (1715)
..+|++++|+||+++||+|+.+. .|+||++..+.. ...|.+|...|.++++..+ .+++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~-----~~~~ 88 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKG-----IILV 88 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETT-----EEEE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCC-----EEEE
Confidence 45899999999999999997643 599999876532 1346688889999988654 3444
Q ss_pred -----------ecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEe-
Q 048801 348 -----------SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG- 415 (1715)
Q Consensus 348 -----------gS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatG- 415 (1715)
++.|+.|++|++............. .......+...+.+++|+|||++|+++
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~v~fSpDg~~la~as 152 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSV----------------DFDASTNADDYTKLVYISREGTVAAIAS 152 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEE----------------CSSCCCCTTCCEEEEEECTTSSCEEEEE
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEeeee----------------ceeecCCcccCEEEEEEcCCCCEEEEEE
Confidence 4567889999886554221110000 001112234558999999999987654
Q ss_pred -cCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC
Q 048801 416 -SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR 494 (1715)
Q Consensus 416 -s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~ 494 (1715)
+.|++|+|||+.+++ ++..+ .|...|.+++|+|++ .+|++++.
T Consensus 153 ~~~d~~i~iwd~~~~~---------~~~~~-~~~~~V~~v~fspdg--------------------------~~l~s~s~ 196 (365)
T 4h5i_A 153 SKVPAIMRIIDPSDLT---------EKFEI-ETRGEVKDLHFSTDG--------------------------KVVAYITG 196 (365)
T ss_dssp SCSSCEEEEEETTTTE---------EEEEE-ECSSCCCEEEECTTS--------------------------SEEEEECS
T ss_pred CCCCCEEEEeECCCCc---------EEEEe-CCCCceEEEEEccCC--------------------------ceEEeccc
Confidence 478999999998743 34444 377789999999987 68888885
Q ss_pred CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC----eEE
Q 048801 495 DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC----RIC 570 (1715)
Q Consensus 495 DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG----tI~ 570 (1715)
++ +.+|+..++.... ......|...|.+++|+|+|.++++++.|+ .|+
T Consensus 197 ~~-~~~~~~~~~~~~~---------------------------~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~ 248 (365)
T 4h5i_A 197 SS-LEVISTVTGSCIA---------------------------RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLT 248 (365)
T ss_dssp SC-EEEEETTTCCEEE---------------------------EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEE
T ss_pred ee-EEEEEeccCccee---------------------------eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEe
Confidence 55 5555554432110 112345677899999999999999999887 688
Q ss_pred EEECCCCce----EEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEE-EcccceEEEEEEcCCCCEE
Q 048801 571 VWNAVDGSL----VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY-EIGRFKLVDGKFSPDGTSI 645 (1715)
Q Consensus 571 IWDl~sg~~----l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl-~~h~~~V~svafSPDG~~L 645 (1715)
+|++..+.. ...+.+|...|++++|+| ++++||+|+.||+|+|||+.+++++..+ .+|...|++++|||||++|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~l 327 (365)
T 4h5i_A 249 KISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYV 327 (365)
T ss_dssp EEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEE
T ss_pred ecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEE
Confidence 999877653 456789999999999999 7899999999999999999999999886 6789999999999999999
Q ss_pred EEEeCCCeEEEEECCCC
Q 048801 646 VLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 646 Asgs~DG~I~IWdl~tG 662 (1715)
|+|+.|++|+||++...
T Consensus 328 aS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 328 ASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSEEEEEECCTT
T ss_pred EEEeCCCeEEEEEcCCC
Confidence 99999999999999654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-30 Score=311.06 Aligned_cols=290 Identities=18% Similarity=0.257 Sum_probs=237.5
Q ss_pred EecCCCCC--eEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeC-CCCCeEEEEecCCCCcceEEEEecCCCcEEE
Q 048801 280 SCRGHEGD--ITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRG-HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356 (1715)
Q Consensus 280 tL~gHs~~--VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~g-H~~~VtsLafSPdg~~~~~LaSgS~DGtVrI 356 (1715)
...+|... +.+++|++ ..+++++.||.|+||++.++.....+.. |...|++++|+|++. +|++|+.||.|++
T Consensus 86 ~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~---~l~~~~~dg~i~i 160 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGS---FLSVGLGNGLVDI 160 (401)
T ss_dssp ECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSS---EEEEEETTSCEEE
T ss_pred eCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCC---EEEEECCCCeEEE
Confidence 34456554 45566664 5578888999999999999998888775 889999999999987 8999999999999
Q ss_pred EecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCC
Q 048801 357 WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQ 436 (1715)
Q Consensus 357 WDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~ 436 (1715)
||+.+++.+..+ ..|...|.+++| ++.+|++|+.||.|++||+...
T Consensus 161 wd~~~~~~~~~~-------------------------~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~------- 206 (401)
T 4aez_A 161 YDVESQTKLRTM-------------------------AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIA------- 206 (401)
T ss_dssp EETTTCCEEEEE-------------------------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS-------
T ss_pred EECcCCeEEEEe-------------------------cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccC-------
Confidence 999887655443 135667999999 5679999999999999999743
Q ss_pred CceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccc
Q 048801 437 PIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWT 516 (1715)
Q Consensus 437 ~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~ 516 (1715)
...+..+.+|...|.+++|+|++ ..|++|+.||.|++||+.++.
T Consensus 207 -~~~~~~~~~~~~~v~~~~~~~~~--------------------------~~l~s~~~d~~v~iwd~~~~~--------- 250 (401)
T 4aez_A 207 -NHQIGTLQGHSSEVCGLAWRSDG--------------------------LQLASGGNDNVVQIWDARSSI--------- 250 (401)
T ss_dssp -SCEEEEEECCSSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEETTCSS---------
T ss_pred -cceeeEEcCCCCCeeEEEEcCCC--------------------------CEEEEEeCCCeEEEccCCCCC---------
Confidence 23467788999999999999976 799999999999999998633
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC-EEEEEe--cCCeEEEEECCCCceEEEEecCCCCeEEE
Q 048801 517 RAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR-FVLAAI--MDCRICVWNAVDGSLVHSLTGHSASSYVL 593 (1715)
Q Consensus 517 ~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~-~LaTgs--~DGtI~IWDl~sg~~l~tL~gH~~~V~sL 593 (1715)
....+..|...|.+++|+|++. ++++|+ .|+.|++||+.+++++..+. |...|.++
T Consensus 251 --------------------~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~ 309 (401)
T 4aez_A 251 --------------------PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSL 309 (401)
T ss_dssp --------------------EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEE
T ss_pred --------------------ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEE
Confidence 2334556788999999999775 555554 69999999999999999886 66789999
Q ss_pred EEccCCCcEEEEE--eCCCcEEEEECCCCceEEE--EEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 594 DVHPFNPRIAMSA--GYDGRTIVWDIWEGTPIRI--YEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 594 afSP~dg~lLaSg--s~DGtI~VWDl~tgk~l~t--l~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
+|+| ++.+++++ +.||.|+|||+.++..... +.+|...|.+++|+|+|.+|++++.||.|++|++.+++.+.
T Consensus 310 ~~s~-~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 310 IWSP-HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp EECS-SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred EECC-CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 9999 56666663 4899999999998765554 66788999999999999999999999999999999887654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-30 Score=314.05 Aligned_cols=291 Identities=16% Similarity=0.227 Sum_probs=227.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----------EEEEecCCC------------CCeEEEEECCCC
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF-----------CLASCRGHE------------GDITDLAVSSNN 297 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk-----------~l~tL~gHs------------~~VtsLafSpDg 297 (1715)
.|.+.|++|+|+|+|.+||+|+.||.|+||++.++. .+..+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 367899999999999999999999999999999877 588899998 889999999998
Q ss_pred --CEEEEEeCCCeeEEEECCCCCce---------------------------------------EE-EeCCCCCeEEEEe
Q 048801 298 --TLVASASNDFVIRVWRLPDGLPI---------------------------------------SV-LRGHTGAVTAIAF 335 (1715)
Q Consensus 298 --~lLASGS~DGtIrVWDl~tg~~l---------------------------------------~~-L~gH~~~VtsLaf 335 (1715)
.+|++++.|++|+||++.++... .. +.+|...|++++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 89999999999999998764331 12 3689999999999
Q ss_pred cCCCCcceEEEEecCCCcEEEEecCCCC-CcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEE
Q 048801 336 SPRPSAIYQLLSSSDDGTCRIWDARYSQ-YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFV 413 (1715)
Q Consensus 336 SPdg~~~~~LaSgS~DGtVrIWDl~tg~-~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~La 413 (1715)
+|++. +|++| .||.|++||+.... ....+... ......|...|.+++|+|++ .+|+
T Consensus 186 ~~~~~---~l~s~-~d~~i~iwd~~~~~~~~~~~~~~------------------~~~~~~~~~~v~~~~~~p~~~~~l~ 243 (447)
T 3dw8_B 186 NSDYE---TYLSA-DDLRINLWHLEITDRSFNIVDIK------------------PANMEELTEVITAAEFHPNSCNTFV 243 (447)
T ss_dssp CTTSS---EEEEE-CSSEEEEEETTEEEEEEEEEECC------------------CSSGGGCCCCEEEEEECSSCTTEEE
T ss_pred cCCCC---EEEEe-CCCeEEEEECCCCCceeeeeecc------------------cccccccCcceEEEEECCCCCcEEE
Confidence 99987 78888 79999999998432 22221110 11233467789999999998 9999
Q ss_pred EecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC------------CeeEEEEccCcccccccccccccccccccccC
Q 048801 414 TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN------------DVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 414 tGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~------------~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
+|+.||.|++||+.++... ...+..+.+|.. .|.+++|+|++
T Consensus 244 s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--------------------- 297 (447)
T 3dw8_B 244 YSSSKGTIRLCDMRASALC-----DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG--------------------- 297 (447)
T ss_dssp EEETTSCEEEEETTTCSSS-----CTTCEEECCC-----CCHHHHHTTCEEEEEECTTS---------------------
T ss_pred EEeCCCeEEEEECcCCccc-----cceeeEeccCCCccccccccccCceEEEEEECCCC---------------------
Confidence 9999999999999876421 112455666665 99999999986
Q ss_pred CcccCceEEEEcCCCeEEEEecCC-CccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC--------------
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRS-RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR-------------- 546 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~-------------- 546 (1715)
.+|++++. |.|++||+++ +..... +..|..
T Consensus 298 -----~~l~~~~~-~~v~iwd~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 298 -----RYMMTRDY-LSVKVWDLNMENRPVET-----------------------------YQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp -----SEEEEEES-SEEEEEETTCCSSCSCC-----------------------------EESCGGGTTTHHHHHHTSGG
T ss_pred -----CEEEEeeC-CeEEEEeCCCCccccce-----------------------------eecccccccccccccccccc
Confidence 78999988 9999999985 332221 111211
Q ss_pred -CeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec---------------------------------CCCCeEE
Q 048801 547 -GVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG---------------------------------HSASSYV 592 (1715)
Q Consensus 547 -~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g---------------------------------H~~~V~s 592 (1715)
.+..++|+|++.+|++|+.||.|+|||+.+++.+. +.+ +...|.+
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 421 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILH 421 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCE
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeE
Confidence 13359999999999999999999999999988763 332 2456889
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 593 LDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 593 LafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
++|+| ++.+||+++.++ +++|..
T Consensus 422 ~~~~p-~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 422 TAWHP-KENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp EEECS-SSSEEEEECSSC-EEEEEC
T ss_pred EEECC-CCCEEEEEecce-eeeecc
Confidence 99999 778888887775 888864
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-30 Score=304.34 Aligned_cols=296 Identities=17% Similarity=0.186 Sum_probs=241.8
Q ss_pred EEeCCCCcEEEEecCCCCCeEEEEECCC---CCEEEEEeCCCeeEEEECCC-CCce-EEEeCCCCCeEEEEecCCCCcce
Q 048801 269 IWSMETAFCLASCRGHEGDITDLAVSSN---NTLVASASNDFVIRVWRLPD-GLPI-SVLRGHTGAVTAIAFSPRPSAIY 343 (1715)
Q Consensus 269 IWDl~tgk~l~tL~gHs~~VtsLafSpD---g~lLASGS~DGtIrVWDl~t-g~~l-~~L~gH~~~VtsLafSPdg~~~~ 343 (1715)
.|+....+.+..+.+|.+.|++++|+|+ |.+|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+|++.
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--- 99 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS--- 99 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSS---
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCC---
Confidence 4456677788889999999999999999 69999999999999999997 5554 77889999999999999987
Q ss_pred EEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEE--ccCCCeEEEecCCCeE
Q 048801 344 QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAY--NANGTVFVTGSSDTFA 421 (1715)
Q Consensus 344 ~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtslaf--SpdG~~LatGs~DG~I 421 (1715)
+|++++.||.|++||+.+++..... .|...|.+++| ++++.+|++|+.||.|
T Consensus 100 ~l~s~~~dg~v~iwd~~~~~~~~~~--------------------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 153 (368)
T 3mmy_A 100 KVFTASCDKTAKMWDLSSNQAIQIA--------------------------QHDAPVKTIHWIKAPNYSCVMTGSWDKTL 153 (368)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEE--------------------------ECSSCEEEEEEEECSSCEEEEEEETTSEE
T ss_pred EEEEEcCCCcEEEEEcCCCCceeec--------------------------cccCceEEEEEEeCCCCCEEEEccCCCcE
Confidence 8999999999999999887644321 24677999999 8999999999999999
Q ss_pred EEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEE
Q 048801 422 RVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW 501 (1715)
Q Consensus 422 rVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIW 501 (1715)
++||+.+++ .+..+..+. .+.++.+.+ ..+++++.++.+.+|
T Consensus 154 ~vwd~~~~~---------~~~~~~~~~-~~~~~~~~~----------------------------~~~~~~~~~~~i~~~ 195 (368)
T 3mmy_A 154 KFWDTRSSN---------PMMVLQLPE-RCYCADVIY----------------------------PMAVVATAERGLIVY 195 (368)
T ss_dssp EEECSSCSS---------CSEEEECSS-CEEEEEEET----------------------------TEEEEEEGGGCEEEE
T ss_pred EEEECCCCc---------EEEEEecCC-CceEEEecC----------------------------CeeEEEeCCCcEEEE
Confidence 999998753 244455444 566666654 478889999999999
Q ss_pred ecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCE----EEEEecCCeEEEEECCCC
Q 048801 502 IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRF----VLAAIMDCRICVWNAVDG 577 (1715)
Q Consensus 502 Dl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~----LaTgs~DGtI~IWDl~sg 577 (1715)
++........ .....+...+.++++.+++.. +++++.||.|++|++...
T Consensus 196 ~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 196 QLENQPSEFR---------------------------RIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP 248 (368)
T ss_dssp ECSSSCEEEE---------------------------ECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred Eeccccchhh---------------------------hccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence 9975321100 001122334566666655544 999999999999999887
Q ss_pred ---ceEEEEecCCC------------CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCC
Q 048801 578 ---SLVHSLTGHSA------------SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDG 642 (1715)
Q Consensus 578 ---~~l~tL~gH~~------------~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG 642 (1715)
..+..+.+|.. .|++++|+| ++.+|++|+.||.|+|||+.+++++..+..|...|.+++|+|||
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g 327 (368)
T 3mmy_A 249 NPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG 327 (368)
T ss_dssp CHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTS
T ss_pred CccccceeeeeeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCC
Confidence 66788888876 799999999 77889999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEEC
Q 048801 643 TSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 643 ~~LAsgs~DG~I~IWdl 659 (1715)
++||+++.|+....|++
T Consensus 328 ~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 328 NIFAYASSYDWSKGHEF 344 (368)
T ss_dssp SCEEEEECCCSTTCGGG
T ss_pred CeEEEEecccccccccc
Confidence 99999999885555444
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-30 Score=303.88 Aligned_cols=266 Identities=21% Similarity=0.335 Sum_probs=222.6
Q ss_pred eeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCcEEEEecCCCCCeEEEEECCC--CCEEEEEeCCCee
Q 048801 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSME--TAFCLASCRGHEGDITDLAVSSN--NTLVASASNDFVI 309 (1715)
Q Consensus 234 k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~--tgk~l~tL~gHs~~VtsLafSpD--g~lLASGS~DGtI 309 (1715)
+++..+.+|.+.|++++|+|+|++||+|+.||.|+||++. +++.+..+.+|...|++++|+++ +.+|++|+.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 3456789999999999999999999999999999999998 66788899999999999999987 9999999999999
Q ss_pred EEEECCCCC--ceEEEeCCCCCeEEEEecCC--CCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 310 RVWRLPDGL--PISVLRGHTGAVTAIAFSPR--PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 310 rVWDl~tg~--~l~~L~gH~~~VtsLafSPd--g~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
+|||+.++. .+..+.+|...|++++|+|+ +. +|++++.||.|++||+..+.......
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~~~~~d~~i~v~d~~~~~~~~~~~---------------- 142 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP---LLLVASSDGKVSVVEFKENGTTSPII---------------- 142 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS---EEEEEETTSEEEEEECCTTSCCCEEE----------------
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCC---EEEEecCCCcEEEEecCCCCceeeEE----------------
Confidence 999999987 77888899999999999999 66 89999999999999998765433221
Q ss_pred CCCCCCCCCCCCcceeEEEEcc-------------CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCee
Q 048801 386 NNGPSSSNGLQSHQILCCAYNA-------------NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVN 452 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSp-------------dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~ 452 (1715)
...|...|.+++|+| ++.+|++|+.||.|++||+.++.. .......+.+|...|.
T Consensus 143 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~h~~~v~ 210 (379)
T 3jrp_A 143 -------IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-----TYVLESTLEGHSDWVR 210 (379)
T ss_dssp -------EECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT-----EEEEEEEECCCSSCEE
T ss_pred -------ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc-----ceeeEEEEecccCcEe
Confidence 123566799999999 699999999999999999976431 2335567889999999
Q ss_pred EEEEccC---cccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCC
Q 048801 453 YVQFSGC---AVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLP 529 (1715)
Q Consensus 453 sLafspd---g~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~ 529 (1715)
+++|+|+ + .+|++++.||.|++||+.++.....
T Consensus 211 ~~~~sp~~~~~--------------------------~~l~s~~~dg~i~iwd~~~~~~~~~------------------ 246 (379)
T 3jrp_A 211 DVAWSPTVLLR--------------------------SYLASVSQDRTCIIWTQDNEQGPWK------------------ 246 (379)
T ss_dssp EEEECCCCSSS--------------------------EEEEEEETTSCEEEEEESSTTSCCE------------------
T ss_pred EEEECCCCCCC--------------------------CeEEEEeCCCEEEEEeCCCCCccce------------------
Confidence 9999998 5 7999999999999999986431100
Q ss_pred CCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceE
Q 048801 530 PQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLV 580 (1715)
Q Consensus 530 ~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l 580 (1715)
........+...|.+++|+|+|++|++++.||.|+||++..+...
T Consensus 247 ------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 247 ------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp ------EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred ------eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 011122346778999999999999999999999999999765433
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=329.30 Aligned_cols=293 Identities=11% Similarity=0.066 Sum_probs=221.3
Q ss_pred EEEEcCCCCCeEEEEEcCC------CCEEEEEeCCCcEEEEeCCCCcE-----------EEEecCCCCCeEEEEECCCCC
Q 048801 236 IKKLRGHRDAVYCAIFDRS------GRFVITGSDDRLVKIWSMETAFC-----------LASCRGHEGDITDLAVSSNNT 298 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpD------G~~LaTGS~DGtIrIWDl~tgk~-----------l~tL~gHs~~VtsLafSpDg~ 298 (1715)
..++.+|.+.|++|+|+|+ +.+||+|+.||+|+|||+.++.. ..++.+|...|++++|++++
T Consensus 200 ~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~- 278 (524)
T 2j04_B 200 VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT- 278 (524)
T ss_dssp EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-
T ss_pred EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-
Confidence 3567889999999999997 57999999999999999987642 34788999999999999864
Q ss_pred EEEEEeCCCeeEEEECCCC-CceEEEeCCCCCeEEE--EecCCC-CcceEEEEecCCCcEEEEecCCCCCcceecCCCCC
Q 048801 299 LVASASNDFVIRVWRLPDG-LPISVLRGHTGAVTAI--AFSPRP-SAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPP 374 (1715)
Q Consensus 299 lLASGS~DGtIrVWDl~tg-~~l~~L~gH~~~VtsL--afSPdg-~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~ 374 (1715)
.||+|+.||+|+|||+.++ .+...+.+|...|++| +|+|++ . +|++++.|++|+|||+++++....+..
T Consensus 279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~---~laS~S~D~tvklWD~~~~~~~~~~~~---- 351 (524)
T 2j04_B 279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDT---VVSTVAVDGYFYIFNPKDIATTKTTVS---- 351 (524)
T ss_dssp EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCC---EEEEEETTSEEEEECGGGHHHHCEEEE----
T ss_pred eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCe---EEEEeccCCeEEEEECCCCCccccccc----
Confidence 8999999999999999977 4566789999999999 577876 5 899999999999999987765433210
Q ss_pred CCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEE
Q 048801 375 DAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV 454 (1715)
Q Consensus 375 ~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sL 454 (1715)
+ .....|.+++|+|++..|++++.|++|++||++++. ++..+.+|.+.|++|
T Consensus 352 -----~--------------~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~---------~~~~l~gH~~~V~sv 403 (524)
T 2j04_B 352 -----R--------------FRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF---------AVHPLVSRETTITAI 403 (524)
T ss_dssp -----E--------------CSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT---------CCEEEEECSSCEEEE
T ss_pred -----c--------------cccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc---------cceeeecCCCceEEE
Confidence 0 001237899999999999999999999999998743 345677899999999
Q ss_pred EEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 455 QFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 455 afspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
+|+|++ ..|++|+.||+|++||+..+.....
T Consensus 404 a~Sp~g--------------------------~~l~Sgs~Dgtv~lwd~~~~~~~~~----------------------- 434 (524)
T 2j04_B 404 GVSRLH--------------------------PMVLAGSADGSLIITNAARRLLHGI----------------------- 434 (524)
T ss_dssp ECCSSC--------------------------CBCEEEETTTEEECCBSCSSTTTCC-----------------------
T ss_pred EeCCCC--------------------------CeEEEEECCCEEEEEechHhhcccc-----------------------
Confidence 999986 7899999999999999764210000
Q ss_pred CCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECC-CCceEEEEecCCCCeEEEEEccCC--CcEEEEEeCCCc
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV-DGSLVHSLTGHSASSYVLDVHPFN--PRIAMSAGYDGR 611 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~-sg~~l~tL~gH~~~V~sLafSP~d--g~lLaSgs~DGt 611 (1715)
.......+...|..++|+|+|..+. ... .+.+|... ++.++..+.+|...|++|+|+|++ +.++|+|+.||.
T Consensus 435 --~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~ 509 (524)
T 2j04_B 435 --KNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGL 509 (524)
T ss_dssp --------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSE
T ss_pred --ccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCce
Confidence 0000001123467899999998553 222 33344432 577888999999999999999954 469999999999
Q ss_pred EEEEECC
Q 048801 612 TIVWDIW 618 (1715)
Q Consensus 612 I~VWDl~ 618 (1715)
|+||++.
T Consensus 510 vrlw~l~ 516 (524)
T 2j04_B 510 LTLEYLS 516 (524)
T ss_dssp EEEEECS
T ss_pred EEEEEcc
Confidence 9999984
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-29 Score=296.35 Aligned_cols=293 Identities=10% Similarity=0.037 Sum_probs=238.4
Q ss_pred EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC---ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcE
Q 048801 278 LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL---PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~---~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtV 354 (1715)
+....+|.+.|++++|+|++.+|++|+.||.|+||++.++. ....+.+|...|++++|+|++.. +|++++.||.|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~i 81 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL--QIYVGTVQGEI 81 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE--EEEEEETTSCE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc--EEEEEcCCCeE
Confidence 33456899999999999999999999999999999998887 35556689999999999998641 58999999999
Q ss_pred EEEec-CCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCC--CCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCc
Q 048801 355 RIWDA-RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL--QSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 355 rIWDl-~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~--h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~ 431 (1715)
++||+ .++.. .. ... |...|.+++|+| +.+|++++.|+.|++||+.+...
T Consensus 82 ~~wd~~~~~~~-~~-------------------------~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~ 134 (342)
T 1yfq_A 82 LKVDLIGSPSF-QA-------------------------LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGD 134 (342)
T ss_dssp EEECSSSSSSE-EE-------------------------CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTT
T ss_pred EEEEeccCCce-Ee-------------------------ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccc
Confidence 99999 76643 11 122 567899999999 99999999999999999875100
Q ss_pred cCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC-CccCc
Q 048801 432 EDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS-RRSHG 510 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t-~~~~~ 510 (1715)
.........+..+. |...|.+++|+++ .+++++.||.|++||+.+ ....
T Consensus 135 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~----------------------------~l~~~~~d~~i~i~d~~~~~~~~- 184 (342)
T 1yfq_A 135 GVIAVKNLNSNNTK-VKNKIFTMDTNSS----------------------------RLIVGMNNSQVQWFRLPLCEDDN- 184 (342)
T ss_dssp BCEEEEESCSSSSS-SCCCEEEEEECSS----------------------------EEEEEESTTEEEEEESSCCTTCC-
T ss_pred ccccccCCeeeEEe-eCCceEEEEecCC----------------------------cEEEEeCCCeEEEEECCcccccc-
Confidence 00000011233334 8889999999874 499999999999999985 3210
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEEEecCCeEEEEECCCC------ceEEEE
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAVDG------SLVHSL 583 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaTgs~DGtI~IWDl~sg------~~l~tL 583 (1715)
.......+...|.+++|+| ++.+|++++.||.|+||++... +.+..+
T Consensus 185 --------------------------~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 238 (342)
T 1yfq_A 185 --------------------------GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp --------------------------CEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred --------------------------ceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee
Confidence 1122345677899999999 9999999999999999999887 888899
Q ss_pred ecCCC---------CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcc-cceEEEEEEcCCCCEEEEEeCCCe
Q 048801 584 TGHSA---------SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG-RFKLVDGKFSPDGTSIVLSDDVGQ 653 (1715)
Q Consensus 584 ~gH~~---------~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h-~~~V~svafSPDG~~LAsgs~DG~ 653 (1715)
.+|.. .|.+++|+| ++.+|++|+.||.|+|||+.+++++..+..| ...|.+++ |+|.+|++++.||.
T Consensus 239 ~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 239 RCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ecccccccccccceeEEEEEEcC-CCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 88865 999999999 7788899999999999999999999999988 88999999 99999999999997
Q ss_pred -EEEEE
Q 048801 654 -IYLLN 658 (1715)
Q Consensus 654 -I~IWd 658 (1715)
...|.
T Consensus 316 ~~~~~~ 321 (342)
T 1yfq_A 316 FKTNAA 321 (342)
T ss_dssp HHHCSS
T ss_pred cccccc
Confidence 44443
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=296.19 Aligned_cols=317 Identities=14% Similarity=0.140 Sum_probs=225.2
Q ss_pred EEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC----CceEEEeCCCCCeEEEEecC--CCCcceEEEEecCCC
Q 048801 279 ASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG----LPISVLRGHTGAVTAIAFSP--RPSAIYQLLSSSDDG 352 (1715)
Q Consensus 279 ~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg----~~l~~L~gH~~~VtsLafSP--dg~~~~~LaSgS~DG 352 (1715)
..+.+|.+.|++++|+|++.+||+|+.||.|+|||+.++ ..+..+.+|...|++++|+| ++. +|++++.||
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~---~l~s~~~dg 81 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR---IIASASYDK 81 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS---EEEEEETTS
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC---EEEEEcCCC
Confidence 356899999999999999999999999999999999876 45677789999999999999 465 899999999
Q ss_pred cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC--CCeEEEecCCCeEEEEeCCCCC
Q 048801 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN--GTVFVTGSSDTFARVWSACKSS 430 (1715)
Q Consensus 353 tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd--G~~LatGs~DG~IrVWDl~t~~ 430 (1715)
.|++||+.++....... ..........|...|.+++|+|+ +.+|++|+.||.|++||+.+++
T Consensus 82 ~v~vwd~~~~~~~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 82 TVKLWEEDPDQEECSGR----------------RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp CEEEEEECTTSCTTSSC----------------SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred eEEEEecCCCccccccc----------------CcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH
Confidence 99999998765321000 00001112346778999999999 9999999999999999998765
Q ss_pred ccCCCCCceeee----eecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCC
Q 048801 431 VEDSEQPIHELD----VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 506 (1715)
Q Consensus 431 ~~~~~~~~~~l~----~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~ 506 (1715)
............ ....|...+.+++|+|+. +....|++++.|+.+.+|+...+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-----------------------~~~~~l~~~~~~~~~~~~~~~~~ 202 (351)
T 3f3f_A 146 DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSR-----------------------FSPEKLAVSALEQAIIYQRGKDG 202 (351)
T ss_dssp CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCS-----------------------SSCCEEEEEETTEEEEEEECTTS
T ss_pred HhccccccccccccccccCCcccceeEEEeccCC-----------------------CCCcEEEEecCCCcEEEEccCCC
Confidence 422211111111 123678899999999862 12379999999999988876643
Q ss_pred ccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC----CEEEEEecCCeEEEEECCCCceEEE
Q 048801 507 RSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN----RFVLAAIMDCRICVWNAVDGSLVHS 582 (1715)
Q Consensus 507 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG----~~LaTgs~DGtI~IWDl~sg~~l~t 582 (1715)
.. .....+.+|...|++++|+|++ .+|++|+.||.|++||+.++.....
T Consensus 203 ~~---------------------------~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 255 (351)
T 3f3f_A 203 KL---------------------------HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLA 255 (351)
T ss_dssp CE---------------------------EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----
T ss_pred ce---------------------------eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccc
Confidence 21 1133455688899999999998 8999999999999999988766555
Q ss_pred EecCCCCeEEEEEccCCCcEEEEE----eCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 583 LTGHSASSYVLDVHPFNPRIAMSA----GYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 583 L~gH~~~V~sLafSP~dg~lLaSg----s~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
...+...+....+++ ....++.+ .....+.+|+...++++..+.+|...|.+++|+|+|++|++++.||.|+||+
T Consensus 256 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 256 SEESLTNSNMFDNSA-DVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp ------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred cCCcccceeccCCCc-ccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 544444444444433 22233332 3445667777777888999999999999999999999999999999999999
Q ss_pred CCCCccc
Q 048801 659 TGQGESQ 665 (1715)
Q Consensus 659 l~tGe~~ 665 (1715)
+.+++..
T Consensus 335 ~~~~~~~ 341 (351)
T 3f3f_A 335 ATYSNEF 341 (351)
T ss_dssp ECTTSCE
T ss_pred cCcCcch
Confidence 9887543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=309.72 Aligned_cols=281 Identities=23% Similarity=0.370 Sum_probs=238.4
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecC
Q 048801 281 CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 281 L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
..+|...|++++| ++.+|++|+.||.|+|||+.+++.+..+.+|.+.|++++| ++. +|++|+.||+|++||+.
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~---~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DER---VIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSS---EEEEEETTSCEEEEESS
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCC---EEEEEcCCCeEEEEECC
Confidence 3457788998887 7899999999999999999999999999999999999999 444 89999999999999999
Q ss_pred CCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCcee
Q 048801 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHE 440 (1715)
Q Consensus 361 tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~ 440 (1715)
+++.+..+ ..|...|.+++|+ +.+|++|+.||.|++||+.++.. ...
T Consensus 202 ~~~~~~~~-------------------------~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~------~~~ 248 (435)
T 1p22_A 202 TGEMLNTL-------------------------IHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTD------ITL 248 (435)
T ss_dssp SCCEEEEE-------------------------CCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSC------CEE
T ss_pred CCcEEEEE-------------------------cCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCC------cee
Confidence 88755443 1346679999997 45999999999999999986532 233
Q ss_pred eeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccccc
Q 048801 441 LDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYH 520 (1715)
Q Consensus 441 l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~ 520 (1715)
...+.+|...|.+++|.+ ..|++|+.||.|++||+.+++
T Consensus 249 ~~~~~~~~~~v~~~~~~~----------------------------~~l~s~~~dg~i~vwd~~~~~------------- 287 (435)
T 1p22_A 249 RRVLVGHRAAVNVVDFDD----------------------------KYIVSASGDRTIKVWNTSTCE------------- 287 (435)
T ss_dssp EEEECCCSSCEEEEEEET----------------------------TEEEEEETTSEEEEEETTTCC-------------
T ss_pred eeEecCCCCcEEEEEeCC----------------------------CEEEEEeCCCeEEEEECCcCc-------------
Confidence 467889999999999943 689999999999999998643
Q ss_pred ccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCC
Q 048801 521 LKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP 600 (1715)
Q Consensus 521 l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg 600 (1715)
....+..|...|.+++| ++.+|++|+.||.|++||+.+++++..+.+|...|.+++| ++
T Consensus 288 ----------------~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~---~~ 346 (435)
T 1p22_A 288 ----------------FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DN 346 (435)
T ss_dssp ----------------EEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC---CS
T ss_pred ----------------EEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe---cC
Confidence 23345567888999998 5789999999999999999999999999999999999998 56
Q ss_pred cEEEEEeCCCcEEEEECCCCc---------eEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 601 RIAMSAGYDGRTIVWDIWEGT---------PIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 601 ~lLaSgs~DGtI~VWDl~tgk---------~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
.+|++|+.||.|+|||+.++. ++..+.+|...|.+++| ++.+|++++.||.|+|||+.++...
T Consensus 347 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 347 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------
T ss_pred CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCc
Confidence 789999999999999997766 88999999999999999 8899999999999999999876543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-28 Score=291.79 Aligned_cols=331 Identities=10% Similarity=0.053 Sum_probs=259.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEE-EEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEE
Q 048801 256 RFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV-ASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIA 334 (1715)
Q Consensus 256 ~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lL-ASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLa 334 (1715)
.++++++.|+.|++||+.+++++..+.+|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 467889999999999999999999998775 48999999999977 677789999999999999998888655 899999
Q ss_pred ecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeE-E
Q 048801 335 FSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVF-V 413 (1715)
Q Consensus 335 fSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~L-a 413 (1715)
|+|++.. ++++++.++.|++||+.+++.+..+.. ...+.+++|+|+|+.| +
T Consensus 81 ~spdg~~--l~~~~~~~~~v~v~d~~~~~~~~~~~~--------------------------~~~~~~~~~s~dg~~l~~ 132 (391)
T 1l0q_A 81 VSPDGKQ--VYVTNMASSTLSVIDTTSNTVAGTVKT--------------------------GKSPLGLALSPDGKKLYV 132 (391)
T ss_dssp ECTTSSE--EEEEETTTTEEEEEETTTTEEEEEEEC--------------------------SSSEEEEEECTTSSEEEE
T ss_pred ECCCCCE--EEEEECCCCEEEEEECCCCeEEEEEeC--------------------------CCCcceEEECCCCCEEEE
Confidence 9999872 345666789999999998876544321 2347899999999977 7
Q ss_pred EecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEc
Q 048801 414 TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS 493 (1715)
Q Consensus 414 tGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS 493 (1715)
+++.++.|++||+.+++ .+..+..+ ..+.+++|+|++ ...+++++
T Consensus 133 ~~~~~~~v~~~d~~~~~---------~~~~~~~~-~~~~~~~~~~dg-------------------------~~l~~~~~ 177 (391)
T 1l0q_A 133 TNNGDKTVSVINTVTKA---------VINTVSVG-RSPKGIAVTPDG-------------------------TKVYVANF 177 (391)
T ss_dssp EETTTTEEEEEETTTTE---------EEEEEECC-SSEEEEEECTTS-------------------------SEEEEEET
T ss_pred EeCCCCEEEEEECCCCc---------EEEEEecC-CCcceEEECCCC-------------------------CEEEEEeC
Confidence 88889999999998643 34444444 457899999986 23447888
Q ss_pred CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe---cCCeEE
Q 048801 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI---MDCRIC 570 (1715)
Q Consensus 494 ~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs---~DGtI~ 570 (1715)
.++.|++||+.+++.. ....+...+.+++|+|+|++|++++ .++.|+
T Consensus 178 ~~~~v~~~d~~~~~~~------------------------------~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~ 227 (391)
T 1l0q_A 178 DSMSISVIDTVTNSVI------------------------------DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVS 227 (391)
T ss_dssp TTTEEEEEETTTTEEE------------------------------EEEECSSEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred CCCEEEEEECCCCeEE------------------------------EEEecCCCccceEECCCCCEEEEEecCcCCCcEE
Confidence 9999999999864321 1122345688999999999999888 689999
Q ss_pred EEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEE---EEEEcC-------
Q 048801 571 VWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLV---DGKFSP------- 640 (1715)
Q Consensus 571 IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~---svafSP------- 640 (1715)
+||+.+++.+..+..|.. +.+++|+|++..++++++.|+.|++||+.+++.+..+..+..+.. .+.+.|
T Consensus 228 ~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (391)
T 1l0q_A 228 MIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPS 306 (391)
T ss_dssp EEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCB
T ss_pred EEECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccc
Confidence 999999999999887754 789999995555668889999999999999999999887655432 123332
Q ss_pred -----CC----------CEEEEEeCCCeEEEEECCCCccccccccceeecCCCccEE
Q 048801 641 -----DG----------TSIVLSDDVGQIYLLNTGQGESQKDAKYDQFFLGDYRPLI 682 (1715)
Q Consensus 641 -----DG----------~~LAsgs~DG~I~IWdl~tGe~~k~~~~~~~fs~D~r~L~ 682 (1715)
+. ..+...+.+..+++|++++|...........|+++|...+
T Consensus 307 a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~~~~~~~~~~~~g~y~~ 363 (391)
T 1l0q_A 307 ADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSKKQNPTHTYSETGIYTV 363 (391)
T ss_dssp CCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEECSSSCEECCSSCEEEEE
T ss_pred cccccccccccccccceEEEEeCCCCceEEEEECCCCcccCcCCCeEEeCCCceEEE
Confidence 21 2344556788999999999876554445567888877654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=299.81 Aligned_cols=271 Identities=18% Similarity=0.267 Sum_probs=205.5
Q ss_pred EecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC--ceEEEeCCCCCeEEEEecCC--CCcceEEEEecCCCcEE
Q 048801 280 SCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL--PISVLRGHTGAVTAIAFSPR--PSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 280 tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~--~l~~L~gH~~~VtsLafSPd--g~~~~~LaSgS~DGtVr 355 (1715)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+..+.+|.+.|++++|++. +. +|++++.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~---~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGN---ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSS---CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCC---EEEEEECCCEEE
Confidence 457899999999999999999999999999999998874 46788999999999999863 54 799999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC--CCeEEEecCCCeEEEEeCCCCCccC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN--GTVFVTGSSDTFARVWSACKSSVED 433 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd--G~~LatGs~DG~IrVWDl~t~~~~~ 433 (1715)
+||+.++....... ...|...|.+++|+|+ |.+|++|+.||.|++|++....
T Consensus 85 iWd~~~~~~~~~~~-----------------------~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~--- 138 (316)
T 3bg1_A 85 IWREENGTWEKSHE-----------------------HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG--- 138 (316)
T ss_dssp EECCSSSCCCEEEE-----------------------ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS---
T ss_pred EEECCCCcceEEEE-----------------------ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC---
Confidence 99998764322111 1235677999999998 8899999999999999997532
Q ss_pred CCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc
Q 048801 434 SEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG 513 (1715)
Q Consensus 434 ~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~ 513 (1715)
.......+.+|...|.+++|+|+...... ... + .........+|++|+.|++|++||+.....
T Consensus 139 ---~~~~~~~~~~h~~~v~~~~~~~~~~~~~~--~~~------~-~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~----- 201 (316)
T 3bg1_A 139 ---QWEVKKINNAHTIGCNAVSWAPAVVPGSL--IDH------P-SGQKPNYIKRFASGGCDNLIKLWKEEEDGQ----- 201 (316)
T ss_dssp ---CEEECCBTTSSSSCBCCCEECCCCCC--------------C-CSCCCCCCCBEECCBTTSBCCEEEECTTSC-----
T ss_pred ---CcceeeeeccccCCcceEEEccccCCccc--ccc------c-cccCccccceEEEecCCCeEEEEEeCCCCc-----
Confidence 12224566789999999999997421000 000 0 000001135899999999999999864210
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC----CEEEEEecCCeEEEEECCCC---c-eEEEEec
Q 048801 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN----RFVLAAIMDCRICVWNAVDG---S-LVHSLTG 585 (1715)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG----~~LaTgs~DGtI~IWDl~sg---~-~l~tL~g 585 (1715)
+ .....+.+|...|.+++|+|++ .+|++|+.|++|+||++.++ . ....+.+
T Consensus 202 -~--------------------~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~ 260 (316)
T 3bg1_A 202 -W--------------------KEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK 260 (316)
T ss_dssp -E--------------------EEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEE
T ss_pred -c--------------------ceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhc
Confidence 0 1123456788999999999987 89999999999999999763 1 2345677
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 586 HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 586 H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
|...|++++|+| ++.+|++|+.||+|+||+..
T Consensus 261 ~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 261 FNDVVWHVSWSI-TANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSSCEEEEEECT-TTCCEEEEESSSCEEEEEEC
T ss_pred CCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEEC
Confidence 899999999999 77889999999999999975
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-29 Score=297.43 Aligned_cols=277 Identities=17% Similarity=0.216 Sum_probs=216.2
Q ss_pred CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC--CCCceEEEeCCCCCeEEEEecCC--CCcceEEEEecC
Q 048801 275 AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP--DGLPISVLRGHTGAVTAIAFSPR--PSAIYQLLSSSD 350 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~--tg~~l~~L~gH~~~VtsLafSPd--g~~~~~LaSgS~ 350 (1715)
|+++..+.+|.+.|++++|+|++++||+|+.||.|+||++. ++..+..+.+|...|++++|+++ +. +|++++.
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~---~l~s~~~ 77 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT---ILASCSY 77 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS---EEEEEET
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCC---EEEEecc
Confidence 45677889999999999999999999999999999999998 56778889999999999999977 55 8999999
Q ss_pred CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC--CCeEEEecCCCeEEEEeCCC
Q 048801 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN--GTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 351 DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd--G~~LatGs~DG~IrVWDl~t 428 (1715)
||.|++||+.+++...... ...|...|.+++|+|+ +.+|++++.||.|++||+..
T Consensus 78 dg~v~iwd~~~~~~~~~~~-----------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 134 (379)
T 3jrp_A 78 DGKVLIWKEENGRWSQIAV-----------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 134 (379)
T ss_dssp TSCEEEEEEETTEEEEEEE-----------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCT
T ss_pred CCEEEEEEcCCCceeEeee-----------------------ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCC
Confidence 9999999998875222111 1234667999999999 99999999999999999986
Q ss_pred CCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCcc
Q 048801 429 SSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS 508 (1715)
Q Consensus 429 ~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~ 508 (1715)
... .....+.+|...|.+++|+|........ .........|++++.||.|++||++++..
T Consensus 135 ~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 194 (379)
T 3jrp_A 135 NGT-------TSPIIIDAHAIGVNSASWAPATIEEDGE-------------HNGTKESRKFVTGGADNLVKIWKYNSDAQ 194 (379)
T ss_dssp TSC-------CCEEEEECCTTCEEEEEECCCC-----------------------CTTCEEEEEETTSCEEEEEEETTTT
T ss_pred CCc-------eeeEEecCCCCceEEEEEcCcccccccc-------------ccCCCCCCEEEEEeCCCeEEEEEecCCCc
Confidence 531 2234567899999999999942100000 00001137899999999999999976331
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC---CCEEEEEecCCeEEEEECCCCc---eEEE
Q 048801 509 HGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD---NRFVLAAIMDCRICVWNAVDGS---LVHS 582 (1715)
Q Consensus 509 ~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD---G~~LaTgs~DGtI~IWDl~sg~---~l~t 582 (1715)
.. .....+..|...|.+++|+|+ +.+|++++.||.|+|||+.++. ....
T Consensus 195 ~~-------------------------~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 249 (379)
T 3jrp_A 195 TY-------------------------VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL 249 (379)
T ss_dssp EE-------------------------EEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE
T ss_pred ce-------------------------eeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeee
Confidence 10 122345678889999999999 8999999999999999998874 2222
Q ss_pred E--ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceE
Q 048801 583 L--TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPI 623 (1715)
Q Consensus 583 L--~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l 623 (1715)
+ ..|...|++++|+| ++.+|++++.||.|+||++..+...
T Consensus 250 ~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 250 LKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp SSSSCCSSCEEEEEECS-SSCCEEEEESSSSEEEEEEEETTEE
T ss_pred eccccCCCcEEEEEEcC-CCCEEEEecCCCcEEEEeCCCCCcc
Confidence 2 34889999999999 7778889999999999999765433
|
| >1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-32 Score=320.65 Aligned_cols=131 Identities=15% Similarity=0.171 Sum_probs=122.5
Q ss_pred cCcccCCchhhHHHHhhhhhhhhhcccccccccchhHHHHHHHHhhccCch----------------------hhHHHHH
Q 048801 15 LGKAPLKFSSTVQEMAQLEQQDMVANQVVEADVDLREVYFLIIHFLSSGPC----------------------QRTLGLL 72 (1715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~i~ElyfLi~~fL~~gp~----------------------~~~~~~L 72 (1715)
|+..-=-|.|+..+|.+|+. +++||+|+|||||++|+.|+|.+.+ .+.|+.+
T Consensus 258 fD~~dR~F~Si~~~w~~~~~------~~~d~kElIPEFf~~Pe~l~N~n~~~lG~~~~g~~v~DV~LP~Wa~sp~~FI~~ 331 (414)
T 1t77_A 258 FDHADRTFSSISRAWRNSQR------DTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHI 331 (414)
T ss_dssp CCCTTTSCCBHHHHHHHHHH------CTTCCCCBCGGGGTCGGGGSCTTCCCCCBCTTSCBCSSCBCCTTCSSHHHHHHH
T ss_pred cCCCccchhhHHHHHHHHhc------cCCCccccCchhhcChHhhccccCCccccccCCCCCCceeCCCCCCCHHHHHHH
Confidence 44444459999999999998 8899999999999999999987642 3799999
Q ss_pred HHHHHhcCCCccccccc----cccCCCCCCCCCCCCCccccCcccccccCCCCChHHHHHHHHHHHhcCCCCCCCccCCC
Q 048801 73 WNELLEHQLLPRRYHAW----FSRSGVNSGNDNDDGISFPLSYNKLVERYPHIEWDHLVKLLRQLLLYKASPFHGRIGGI 148 (1715)
Q Consensus 73 ~ReALESeyVS~~LH~W----FGyKQrG~eAv~A~NVFh~LTYEG~Vdld~i~dp~~r~aie~QI~nFGQTP~QL~~~pH 148 (1715)
||+||||+|||+|||+| |||||+|++|++|.||||||||||.||+++|.||.+|.++++||.+|||||.|||.+||
T Consensus 332 ~R~aLES~~VS~~Lh~WIDLiFGykq~G~~Av~a~Nvf~~ltY~~~vd~~~i~d~~~~~a~~~~i~~fGQ~P~QLF~~pH 411 (414)
T 1t77_A 332 NRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPH 411 (414)
T ss_dssp HHHHHHSHHHHTTHHHHHHHHTSTTSSHHHHHHHTCCBCGGGSTTSCCGGGCCSHHHHHHHHHHHHHHCCCCCCCCSSCC
T ss_pred HHHHHcChHhhhhhhhhhhhhcCcccCCHHHHhcCCccccceecCcccccccCCHHHHHHHHHHHHHcCCChhhhhcCCC
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 048801 149 APN 151 (1715)
Q Consensus 149 PPr 151 (1715)
|+|
T Consensus 412 P~R 414 (414)
T 1t77_A 412 PPR 414 (414)
T ss_dssp CCC
T ss_pred CCC
Confidence 986
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8e-30 Score=319.54 Aligned_cols=324 Identities=11% Similarity=0.017 Sum_probs=246.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCce
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI 320 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l 320 (1715)
.-...|.+|+|+|||+++||++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+. +..
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~---~~~ 77 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELA---QQN 77 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCC---CSS
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeC---CCc
Confidence 3457899999999999999999999999 755554 448999999999999999 4555555554 322
Q ss_pred EEEe-CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcc
Q 048801 321 SVLR-GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399 (1715)
Q Consensus 321 ~~L~-gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~ 399 (1715)
..+. .|...|++++|+|+|. +|++++.||+|++||... ++..+. .. .......
T Consensus 78 ~~~~~~~~~~V~~vawSPdG~---~LAs~s~dg~V~iwd~~~--~l~~l~---~~------------------~~~~~~s 131 (588)
T 2j04_A 78 GLLNSQPVCYPRVCKPSPIDD---WMAVLSNNGNVSVFKDNK--MLTNLD---SK------------------GNLSSRT 131 (588)
T ss_dssp CSSTTSCSCCEEEEEECSSSS---CEEEEETTSCEEEEETTE--EEEECC---CS------------------SCSTTTC
T ss_pred eEeecCCCCcEEEEEECCCCC---EEEEEeCCCcEEEEeCCc--eeeecc---CC------------------Ccccccc
Confidence 2333 5688999999999998 899999999999999543 111110 00 0001235
Q ss_pred eeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee----cCCCCCeeEEEEccCcccccccccccccccc
Q 048801 400 ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL----SGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 400 VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l----~gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
|.+++|||+|++||+|+.||+|+||++.++.+.. ...-.+..+ .+|...|.+++|+|+
T Consensus 132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~--~~~i~l~ti~~~~~gh~~~V~sVawSPd---------------- 193 (588)
T 2j04_A 132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENT--PEFYFESSIRLSDAGSKDWVTHIVWYED---------------- 193 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTC--CCCEEEEEEECSCTTCCCCEEEEEEETT----------------
T ss_pred EEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccc--ccceeeeeeecccccccccEEEEEEcCC----------------
Confidence 8999999999999999999999999998753100 000124454 678899999999995
Q ss_pred cccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc-cCCCCCeeEEEeC
Q 048801 476 VPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL-LPTPRGVNMIVWS 554 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l-~~h~~~VtslafS 554 (1715)
. +++++.|++|++|++.++... .....+ .+|...|.+++|+
T Consensus 194 -----------g-Laass~D~tVrlWd~~~~~~~--------------------------~~~~tL~~~h~~~V~svaFs 235 (588)
T 2j04_A 194 -----------V-LVAALSNNSVFSMTVSASSHQ--------------------------PVSRMIQNASRRKITDLKIV 235 (588)
T ss_dssp -----------E-EEEEETTCCEEEECCCSSSSC--------------------------CCEEEEECCCSSCCCCEEEE
T ss_pred -----------c-EEEEeCCCeEEEEECCCCccc--------------------------cceeeecccccCcEEEEEEE
Confidence 4 889999999999998763310 001123 2567789999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEE--ccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccce
Q 048801 555 LDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDV--HPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFK 632 (1715)
Q Consensus 555 PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLaf--SP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~ 632 (1715)
|..||+++ +++|++||+.+++......+|.+.|+.++| +| ++..+++++.||+ +||...
T Consensus 236 --g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~-d~~~La~a~edG~-klw~~d-------------- 296 (588)
T 2j04_A 236 --DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEK-ESTILLMSNKTSY-KVLLED-------------- 296 (588)
T ss_dssp --TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCS-SCEEEEECSSCEE-EEEESS--------------
T ss_pred --CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-EEEeec--------------
Confidence 68999887 699999999988775555489999999999 99 7788999999999 999986
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc----cccccceeecCCCccEEEc
Q 048801 633 LVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ----KDAKYDQFFLGDYRPLIRD 684 (1715)
Q Consensus 633 V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~----k~~~~~~~fs~D~r~L~~d 684 (1715)
.++|+||+..+++. |+++++|++..+... ....+...|+|||..|+..
T Consensus 297 --~~~~spd~~l~a~~--d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~ 348 (588)
T 2j04_A 297 --ELHVTADNIIAPYL--EKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIV 348 (588)
T ss_dssp --SEEEECCCSSHHHH--HHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEE
T ss_pred --cEEECCCceEEEEc--CCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEE
Confidence 25699999888875 899999998555422 1224567889999877643
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=298.90 Aligned_cols=287 Identities=19% Similarity=0.254 Sum_probs=231.7
Q ss_pred CeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCC----cEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCeeEEEECCCC-
Q 048801 245 AVYCAIFDRSGRFV-ITGSDDRLVKIWSMETA----FCLASCRGHEGDITDLAVSS-NNTLVASASNDFVIRVWRLPDG- 317 (1715)
Q Consensus 245 ~Vt~VafSpDG~~L-aTGS~DGtIrIWDl~tg----k~l~tL~gHs~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~tg- 317 (1715)
...+++++|+...+ ++|+.||.|+||++... ..+..+.+|.+.|++++|+| ++.+||+|+.||+|+||++.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 34467888877544 45788999999999654 24556789999999999999 9999999999999999999988
Q ss_pred ------CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 318 ------LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 318 ------~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
.++..+.+|...|++++|+|++.. +|++++.||.|++||+.+++.+..+.
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~---------------------- 171 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQN--VLLSAGCDNVILVWDVGTGAAVLTLG---------------------- 171 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTT--EEEEEETTSCEEEEETTTTEEEEEEC----------------------
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCC--EEEEEcCCCEEEEEECCCCCccEEEe----------------------
Confidence 678899999999999999999742 89999999999999999876554431
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee-cCCCCC-eeEEEEccCcccccccccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL-SGHEND-VNYVQFSGCAVASRSAMSD 469 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l-~gH~~~-V~sLafspdg~as~~~~~~ 469 (1715)
...|...|.+++|+|+|.+|++|+.||.|++||+.++ ..+..+ .+|.+. +.++.|+|++
T Consensus 172 -~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~--------- 232 (402)
T 2aq5_A 172 -PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG---------TVVAEKDRPHEGTRPVHAVFVSEG--------- 232 (402)
T ss_dssp -TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT---------EEEEEEECSSCSSSCCEEEECSTT---------
T ss_pred -cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC---------ceeeeeccCCCCCcceEEEEcCCC---------
Confidence 0235667999999999999999999999999999874 335555 678775 8999999986
Q ss_pred cccccccccccCCcccCceEEEE---cCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC
Q 048801 470 AFKEENVPKFKNSWFCHDNIVTC---SRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR 546 (1715)
Q Consensus 470 ~~~~~~~~~~~~s~~~~~~LaSg---S~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~ 546 (1715)
.+|++| +.|+.|++||+.+..... ......+..
T Consensus 233 -----------------~~l~~g~~~~~d~~i~iwd~~~~~~~~---------------------------~~~~~~~~~ 268 (402)
T 2aq5_A 233 -----------------KILTTGFSRMSERQVALWDTKHLEEPL---------------------------SLQELDTSS 268 (402)
T ss_dssp -----------------EEEEEEECTTCCEEEEEEETTBCSSCS---------------------------EEEECCCCS
T ss_pred -----------------cEEEEeccCCCCceEEEEcCccccCCc---------------------------eEEeccCCC
Confidence 688888 799999999998643100 011224566
Q ss_pred CeeEEEeCCCCCEEEE-EecCCeEEEEECCCCce-EEEEec--CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 547 GVNMIVWSLDNRFVLA-AIMDCRICVWNAVDGSL-VHSLTG--HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 547 ~VtslafSPDG~~LaT-gs~DGtI~IWDl~sg~~-l~tL~g--H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
.|.+++|+|++.+|++ |+.|+.|++|++.+++. +..+.. |...|.+++|+| ++.+++ +.++.+++|++.++.
T Consensus 269 ~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp-~~~~~~--s~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 269 GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP-KRGLEV--NKCEIARFYKLHERK 344 (402)
T ss_dssp SCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECC-GGGSCG--GGTEEEEEEEEETTE
T ss_pred ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEec-ccccce--ecceeEEEEEcCCCc
Confidence 7999999999999975 55799999999999884 555554 458999999999 666665 357799999987654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=299.75 Aligned_cols=308 Identities=11% Similarity=0.145 Sum_probs=240.5
Q ss_pred CCCCCceeeeeecc-ccCcccccCCCCcccccccccccCcccccc------ceeEEEEcCCCCCeEEEEEcCCCCEEEEE
Q 048801 189 HMQADQVHGLSLRE-IGGGFKKHHRAPSVCSACYAIAKPSTMVQK------MQNIKKLRGHRDAVYCAIFDRSGRFVITG 261 (1715)
Q Consensus 189 ~~~~d~V~~ls~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~k~l~~L~GH~~~Vt~VafSpDG~~LaTG 261 (1715)
..|.+.|.++.|.+ .+..++.+.....+. .|.+.. .+....+ +|.+.|++++|+|++.+|++|
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~---------vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~ 129 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIK---------IWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVS 129 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEE---------EEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEE---------EeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEE
Confidence 34678899999988 665555443333222 222222 2223333 599999999999999999999
Q ss_pred eCCCcEEEEeCC---CCcEEEEecC------------CCCCeEEEE--ECCCCCEEEEEeCCCeeEEEECCCCCceEEEe
Q 048801 262 SDDRLVKIWSME---TAFCLASCRG------------HEGDITDLA--VSSNNTLVASASNDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 262 S~DGtIrIWDl~---tgk~l~tL~g------------Hs~~VtsLa--fSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~ 324 (1715)
+.||.|+|||+. +++.+..+.+ +...+.++. +++++.+|++|+.||.|++||+.+++++..+.
T Consensus 130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence 999999999994 5655554432 456677777 56889999999999999999999999999999
Q ss_pred C--CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeE
Q 048801 325 G--HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILC 402 (1715)
Q Consensus 325 g--H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vts 402 (1715)
+ |.+.|++++|+|++. +|++|+.||.|++||+++++.+..+.. .+...|.+
T Consensus 210 ~~~h~~~v~~~~~s~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------~~~~~v~~ 262 (437)
T 3gre_A 210 NSPRHGAVSSICIDEECC---VLILGTTRGIIDIWDIRFNVLIRSWSF------------------------GDHAPITH 262 (437)
T ss_dssp CCGGGCCEEEEEECTTSC---EEEEEETTSCEEEEETTTTEEEEEEBC------------------------TTCEEEEE
T ss_pred cCCCCCceEEEEECCCCC---EEEEEcCCCeEEEEEcCCccEEEEEec------------------------CCCCceEE
Confidence 8 899999999999987 899999999999999998776554422 23456999
Q ss_pred EEEc----cCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccc
Q 048801 403 CAYN----ANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 403 lafS----pdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
++|+ +++.+|++|+.||.|+|||+.++ ..+..+.+|...+..+.|+|++.
T Consensus 263 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~----------------- 316 (437)
T 3gre_A 263 VEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG---------HCQYAFINSDEQPSMEHFLPIEK----------------- 316 (437)
T ss_dssp EEECTTTCTTEEEEEEESTTEEEEEEETTTT---------EEEEEEESSSSCCCGGGGSCBCS-----------------
T ss_pred EEeccccCCCccEEEEEcCCCcEEEEEcCCC---------cEEEEEEcCCCCCccceeccccc-----------------
Confidence 9665 46889999999999999999874 45677888888877777776541
Q ss_pred ccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccccc--CCCCCeeEEEeCCC
Q 048801 479 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLL--PTPRGVNMIVWSLD 556 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~--~h~~~VtslafSPD 556 (1715)
.+ .+ ..+. .|...|++++|+ +
T Consensus 317 ---------~l----~~-------------------------------------------~~~~~~~~~~~v~~l~~~-~ 339 (437)
T 3gre_A 317 ---------GL----EE-------------------------------------------LNFCGIRSLNALSTISVS-N 339 (437)
T ss_dssp ---------SG----GG-------------------------------------------CCCCCCCSGGGGCCEEEE-T
T ss_pred ---------cc----cc-------------------------------------------ceecccccCCceEEEEEC-C
Confidence 11 00 0011 266789999999 8
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEEec-------------------------------------CCCCeEEEEEccC-
Q 048801 557 NRFVLAAIMDCRICVWNAVDGSLVHSLTG-------------------------------------HSASSYVLDVHPF- 598 (1715)
Q Consensus 557 G~~LaTgs~DGtI~IWDl~sg~~l~tL~g-------------------------------------H~~~V~sLafSP~- 598 (1715)
+.+|++|+.|+.|++||+.+++.+..+.+ |...|++++|+++
T Consensus 340 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~ 419 (437)
T 3gre_A 340 DKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVD 419 (437)
T ss_dssp TEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESS
T ss_pred ceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccC
Confidence 89999999999999999999988877765 8899999999995
Q ss_pred CCcEEEEEeCCCcEEEEE
Q 048801 599 NPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 599 dg~lLaSgs~DGtI~VWD 616 (1715)
+..+|++|+.||.|+||+
T Consensus 420 ~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 420 ETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp SSEEEEEEETTSCEEEEC
T ss_pred CceEEEEEcCCceEEEeC
Confidence 367999999999999995
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=326.93 Aligned_cols=262 Identities=22% Similarity=0.349 Sum_probs=218.5
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCcEEEEecCCCCCeEEEEECCC--CCEEEEEeCCCeeEE
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSME--TAFCLASCRGHEGDITDLAVSSN--NTLVASASNDFVIRV 311 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~--tgk~l~tL~gHs~~VtsLafSpD--g~lLASGS~DGtIrV 311 (1715)
+..+.||.+.|++++|+|+|++|++|+.||.|+||++. ++..+..+.+|.+.|++++|+++ +.+|++|+.||.|+|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 45689999999999999999999999999999999998 66788899999999999999988 999999999999999
Q ss_pred EECCCCC--ceEEEeCCCCCeEEEEecCC--CCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 312 WRLPDGL--PISVLRGHTGAVTAIAFSPR--PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 312 WDl~tg~--~l~~L~gH~~~VtsLafSPd--g~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
||+.++. .+..+.+|...|++++|+|+ +. +|++|+.||.|++||+.++.......
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~---~l~sgs~dg~I~vwdl~~~~~~~~~~------------------ 140 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP---LLLVASSDGKVSVVEFKENGTTSPII------------------ 140 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCS---EEEEEETTSEEEEEECCSSSCCCCEE------------------
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCC---EEEEEeCCCcEEEEEeecCCCcceeE------------------
Confidence 9999886 77788899999999999998 66 89999999999999998764322221
Q ss_pred CCCCCCCCCCcceeEEEEcc-------------CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEE
Q 048801 388 GPSSSNGLQSHQILCCAYNA-------------NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV 454 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSp-------------dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sL 454 (1715)
...|...|.+++|+| ++.+|++|+.||.|++||+.++. ........+.+|...|.++
T Consensus 141 -----~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~-----~~~~~~~~~~~h~~~V~~l 210 (753)
T 3jro_A 141 -----IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-----QTYVLESTLEGHSDWVRDV 210 (753)
T ss_dssp -----EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT-----TEEEEEEEECCCSSCEEEE
T ss_pred -----eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc-----ccceeeeeecCCCCcEEEE
Confidence 123567799999999 58999999999999999998642 1234567788999999999
Q ss_pred EEccC---cccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCC
Q 048801 455 QFSGC---AVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531 (1715)
Q Consensus 455 afspd---g~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~ 531 (1715)
+|+|+ + ..|++++.||.|++||+.++....
T Consensus 211 ~~sp~~~~~--------------------------~~l~s~s~Dg~I~iwd~~~~~~~~--------------------- 243 (753)
T 3jro_A 211 AWSPTVLLR--------------------------SYLASVSQDRTCIIWTQDNEQGPW--------------------- 243 (753)
T ss_dssp EECCCCSSS--------------------------EEEEEEESSSCEEEEEESSSSSCC---------------------
T ss_pred EeccCCCCC--------------------------CEEEEEecCCEEEEecCCCCCCcc---------------------
Confidence 99998 5 799999999999999998643110
Q ss_pred CCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc
Q 048801 532 PPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS 578 (1715)
Q Consensus 532 ~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~ 578 (1715)
.........|...|++++|+|+|.+|++|+.||.|+||++.++.
T Consensus 244 ---~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 244 ---KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ---BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ---eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 01122334577889999999999999999999999999998643
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=304.02 Aligned_cols=322 Identities=14% Similarity=0.061 Sum_probs=239.8
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCC
Q 048801 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS 362 (1715)
Q Consensus 283 gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg 362 (1715)
.-...|.+++|+|||+++||++.|++|+ |...++.+ .+|...|.+++|+|++ .++.+.+|+.
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg----------~~~~~~~~~~--- 74 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE----------FENKLDFELA--- 74 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC----------CCCTTTTSCC---
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC----------CcceEEEEeC---
Confidence 3567899999999999999999999999 76555544 7999999999999986 3455555543
Q ss_pred CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeee
Q 048801 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442 (1715)
Q Consensus 363 ~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~ 442 (1715)
+....+ ...+...|.+++|+|+|.+||+++.||.|+||+... .+.
T Consensus 75 ~~~~~~------------------------~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----------~l~ 119 (588)
T 2j04_A 75 QQNGLL------------------------NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----------MLT 119 (588)
T ss_dssp CSSCSS------------------------TTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----------EEE
T ss_pred CCceEe------------------------ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----------eee
Confidence 211111 112256699999999999999999999999999632 345
Q ss_pred eecCCCC-----CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccc
Q 048801 443 VLSGHEN-----DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTR 517 (1715)
Q Consensus 443 ~l~gH~~-----~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~ 517 (1715)
.+. |.. .|.+++|+|++ ++|++|+.||+|+|||+.++.....
T Consensus 120 ~l~-~~~~~~~~sv~svafSPDG--------------------------~~LAsgs~DGtVkIWd~~~~~l~~~------ 166 (588)
T 2j04_A 120 NLD-SKGNLSSRTYHCFEWNPIE--------------------------SSIVVGNEDGELQFFSIRKNSENTP------ 166 (588)
T ss_dssp ECC-CSSCSTTTCEEEEEECSSS--------------------------SCEEEEETTSEEEEEECCCCTTTCC------
T ss_pred ecc-CCCccccccEEEEEEcCCC--------------------------CEEEEEcCCCEEEEEECCCCccccc------
Confidence 555 554 59999999997 8999999999999999986431000
Q ss_pred cccccCCCCCCCCCCCCCCCcccc----cCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce---EEEE-ecCCCC
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRL----LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL---VHSL-TGHSAS 589 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l----~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~---l~tL-~gH~~~ 589 (1715)
.-..+..+ .+|...|.+++|+||| |++++.|++|++|++.++.. ..++ .+|...
T Consensus 167 ----------------~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~ 228 (588)
T 2j04_A 167 ----------------EFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRK 228 (588)
T ss_dssp ----------------CCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSC
T ss_pred ----------------cceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCc
Confidence 00001222 4577899999999999 88899999999999988773 4567 488899
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCccccc
Q 048801 590 SYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKF--SPDGTSIVLSDDVGQIYLLNTGQGESQKD 667 (1715)
Q Consensus 590 V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svaf--SPDG~~LAsgs~DG~I~IWdl~tGe~~k~ 667 (1715)
|.+++|+ +.+||+++ +|+|++||+.+++......+|...|.+++| +|||..|++++.+|. ++|...
T Consensus 229 V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d------- 296 (588)
T 2j04_A 229 ITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED------- 296 (588)
T ss_dssp CCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS-------
T ss_pred EEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec-------
Confidence 9999998 37788877 699999999888774444479999999999 999999999999999 999986
Q ss_pred cccceeecCCCccEEEcCCCCeeecccccccCcCCCCCcccCCCCCCCCCccchhhhhhcccccceeecCCCCeEEeee
Q 048801 668 AKYDQFFLGDYRPLIRDSLGNVLDQETQLVPHRRNIQDPLCDSSMIPYEEPYQSMYQQRRLGALGIEWRPSSIKLAIGL 746 (1715)
Q Consensus 668 ~~~~~~fs~D~r~L~~d~~g~vld~~tq~~p~~~~~~~~lvD~~~~p~p~~~q~~~q~r~~g~~~l~~sPdg~~lAvg~ 746 (1715)
...|++|+..++.. ++.+ . ++. ..+.+ ++ .+.. .....+++|+|||..+|++.
T Consensus 297 ---~~~~spd~~l~a~~-d~~v-----~-------lW~----~~g~~----l~-~~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 297 ---ELHVTADNIIAPYL-EKKF-----K-------KWS----TIWNE----FN-NYET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp ---SEEEECCCSSHHHH-HHHH-----H-------HTT----TTTTS----SS-SSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred ---cEEECCCceEEEEc-CCEE-----E-------EEE----CCCCc----ee-eecc-ceEEEEEEECCCCCEEEEEE
Confidence 13377888766442 1111 1 011 11111 11 1111 23456899999999999883
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-28 Score=294.21 Aligned_cols=290 Identities=16% Similarity=0.193 Sum_probs=229.4
Q ss_pred CeEEEEECCCCCEE-EEEeCCCeeEEEECCCC----CceEEEeCCCCCeEEEEecC-CCCcceEEEEecCCCcEEEEecC
Q 048801 287 DITDLAVSSNNTLV-ASASNDFVIRVWRLPDG----LPISVLRGHTGAVTAIAFSP-RPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 287 ~VtsLafSpDg~lL-ASGS~DGtIrVWDl~tg----~~l~~L~gH~~~VtsLafSP-dg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
....++++|+...+ ++++.||.|+||++... ..+..+.+|.+.|++++|+| ++. +|++|+.||+|++||+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~---~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN---VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT---EEEEEETTSEEEEEECC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC---EEEEEeCCCeEEEEEcc
Confidence 34468888887544 45788999999999654 34566789999999999999 666 89999999999999998
Q ss_pred CCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCce
Q 048801 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIH 439 (1715)
Q Consensus 361 tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~ 439 (1715)
++...... .........|...|.+++|+|++ .+|++|+.||.|+|||+.++ .
T Consensus 113 ~~~~~~~~------------------~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~---------~ 165 (402)
T 2aq5_A 113 DGGLVLPL------------------REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG---------A 165 (402)
T ss_dssp TTCCSSCB------------------CSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT---------E
T ss_pred CCCCcccc------------------CCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC---------C
Confidence 77532211 01122234567889999999998 69999999999999999864 3
Q ss_pred eeeee--cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccc
Q 048801 440 ELDVL--SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTR 517 (1715)
Q Consensus 440 ~l~~l--~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~ 517 (1715)
.+..+ .+|...|.+++|+|++ ..|++++.||.|++||+++++.
T Consensus 166 ~~~~~~~~~~~~~v~~~~~~~~~--------------------------~~l~~~~~d~~i~iwd~~~~~~--------- 210 (402)
T 2aq5_A 166 AVLTLGPDVHPDTIYSVDWSRDG--------------------------ALICTSCRDKRVRVIEPRKGTV--------- 210 (402)
T ss_dssp EEEEECTTTCCSCEEEEEECTTS--------------------------SCEEEEETTSEEEEEETTTTEE---------
T ss_pred ccEEEecCCCCCceEEEEECCCC--------------------------CEEEEEecCCcEEEEeCCCCce---------
Confidence 45666 7899999999999986 7999999999999999986442
Q ss_pred cccccCCCCCCCCCCCCCCCcccc-cCCCCC-eeEEEeCCCCCEEEEE---ecCCeEEEEECCCCce-EEEEe-cCCCCe
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRL-LPTPRG-VNMIVWSLDNRFVLAA---IMDCRICVWNAVDGSL-VHSLT-GHSASS 590 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l-~~h~~~-VtslafSPDG~~LaTg---s~DGtI~IWDl~sg~~-l~tL~-gH~~~V 590 (1715)
...+ ..|... +.+++|+|++.+|++| +.|+.|++||+.++.. +.... .|...|
T Consensus 211 --------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 270 (402)
T 2aq5_A 211 --------------------VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV 270 (402)
T ss_dssp --------------------EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSC
T ss_pred --------------------eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCce
Confidence 1222 344444 8899999999999999 7899999999998764 33333 577889
Q ss_pred EEEEEccCCCcEEEEEeCCCcEEEEECCCCce-EEEEEc--ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 591 YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTP-IRIYEI--GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 591 ~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~-l~tl~~--h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
.+++|+|++..++++|+.||.|++||+.+++. +..+.. +...|.+++|+|++.++++ .++.+++|++.+++
T Consensus 271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 99999995544555677899999999999884 555554 3478999999999998875 56699999998764
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-27 Score=289.14 Aligned_cols=308 Identities=11% Similarity=0.044 Sum_probs=232.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---EEEEecC-------------------------------------
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF---CLASCRG------------------------------------- 283 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk---~l~tL~g------------------------------------- 283 (1715)
.+|.|++|+++|++|++++ ++.|++||+.+|+ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 5789999999999777664 7899999999998 6666653
Q ss_pred -----------------CCCCeEEEEECCCCCEE-EEEeCCCeeEEEECC--CCCceEEEe--CCCCCeEEEEecCCCCc
Q 048801 284 -----------------HEGDITDLAVSSNNTLV-ASASNDFVIRVWRLP--DGLPISVLR--GHTGAVTAIAFSPRPSA 341 (1715)
Q Consensus 284 -----------------Hs~~VtsLafSpDg~lL-ASGS~DGtIrVWDl~--tg~~l~~L~--gH~~~VtsLafSPdg~~ 341 (1715)
|.+.|++++|+|++++| |+|+.||.|+|||+. ++..+..+. .|...|++++|+|++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~- 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT- 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS-
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC-
Confidence 33479999999999996 899999999999999 888888886 5678999999999997
Q ss_pred ceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC---CCeEEEecCC
Q 048801 342 IYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN---GTVFVTGSSD 418 (1715)
Q Consensus 342 ~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd---G~~LatGs~D 418 (1715)
+|++++.+|.|++|++.++..... .......|...|.+++|+|+ +.+|++|+.|
T Consensus 163 --~l~~~~~~g~v~~~~~~~~~~~~~---------------------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d 219 (450)
T 2vdu_B 163 --TVIIADKFGDVYSIDINSIPEEKF---------------------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD 219 (450)
T ss_dssp --EEEEEETTSEEEEEETTSCCCSSC---------------------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETT
T ss_pred --EEEEEeCCCcEEEEecCCcccccc---------------------cceeeecccCceEEEEEcCCCCCCcEEEEEcCC
Confidence 899999999999999987653320 01122346678999999999 9999999999
Q ss_pred CeEEEEeCCCCCccCCCCCceeeee-ecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCe
Q 048801 419 TFARVWSACKSSVEDSEQPIHELDV-LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGS 497 (1715)
Q Consensus 419 G~IrVWDl~t~~~~~~~~~~~~l~~-l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGs 497 (1715)
+.|++||+.++. .+.. +.+|...|.+++|+ ++ .+|++++.|+.
T Consensus 220 ~~i~vwd~~~~~---------~~~~~~~~h~~~v~~~~~s-d~--------------------------~~l~s~~~d~~ 263 (450)
T 2vdu_B 220 EHIKISHYPQCF---------IVDKWLFGHKHFVSSICCG-KD--------------------------YLLLSAGGDDK 263 (450)
T ss_dssp SCEEEEEESCTT---------CEEEECCCCSSCEEEEEEC-ST--------------------------TEEEEEESSSE
T ss_pred CcEEEEECCCCc---------eeeeeecCCCCceEEEEEC-CC--------------------------CEEEEEeCCCe
Confidence 999999998653 2333 66899999999999 75 79999999999
Q ss_pred EEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEEC--
Q 048801 498 AIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNA-- 574 (1715)
Q Consensus 498 IrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl-- 574 (1715)
|++||+.+++....+........+..... . ................|.+++|+|++++|++++ .++.|+||++
T Consensus 264 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~ 339 (450)
T 2vdu_B 264 IFAWDWKTGKNLSTFDYNSLIKPYLNDQH-L---APPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSE 339 (450)
T ss_dssp EEEEETTTCCEEEEEECHHHHGGGCCTTS-B---C----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECS
T ss_pred EEEEECCCCcEeeeecchhhhhhhhhhcc-c---ccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEecc
Confidence 99999998765433321110000000000 0 000000000112345799999999999999999 8999999999
Q ss_pred CCC---ceEEEEecCCCCeEEEEEccCCCcEEEEEeC------CCcEEEEECC
Q 048801 575 VDG---SLVHSLTGHSASSYVLDVHPFNPRIAMSAGY------DGRTIVWDIW 618 (1715)
Q Consensus 575 ~sg---~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~------DGtI~VWDl~ 618 (1715)
.++ ..+..+.+| +.|.+++|+| ++.++++++. +..|.||.+.
T Consensus 340 ~~~~~l~~~~~~~~~-~~v~~~~~~~-~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 340 KQKGDLALKQIITFP-YNVISLSAHN-DEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp SSTTCEEEEEEEECS-SCEEEEEEET-TEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred CCCCceeeccEeccC-CceEEEEecC-CcEEEEEecccCCCCCCcceEEEEEE
Confidence 666 677788888 8899999999 5444444333 4557888754
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-27 Score=285.21 Aligned_cols=306 Identities=12% Similarity=0.067 Sum_probs=213.1
Q ss_pred EEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEe
Q 048801 269 IWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348 (1715)
Q Consensus 269 IWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSg 348 (1715)
||++.+...+..+.+|...|++++|+|||++||+|+.++ ++||++.++..+..... ..+..+++.++++. .++++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~ 77 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNY--VAFVT 77 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSE--EEEEC
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCE--EEEEE
Confidence 677788888888899999999999999999999998775 78999988766655432 35778888887762 44678
Q ss_pred cCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCC
Q 048801 349 SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 349 S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t 428 (1715)
+.|++|++||+.+++.+..+.. ...|.+++|+++. ++++ .++.|++||+.+
T Consensus 78 ~~d~~v~iWd~~~~~~~~~~~~--------------------------~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~ 128 (355)
T 3vu4_A 78 GVKEVVHIWDDVKKQDVSRIKV--------------------------DAPVKDLFLSREF--IVVS-YGDVISVFKFGN 128 (355)
T ss_dssp SSTTEEEEEETTTTEEEEEEEC--------------------------SSCEEEEEECSSE--EEEE-ETTEEEEEESST
T ss_pred CCccEEEEEECCCCcEEEEEEC--------------------------CCceEEEEEcCCE--EEEE-EcCEEEEEECCC
Confidence 8899999999998876654422 3458999998875 3333 478999999986
Q ss_pred C-CccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEE--EcCCCeEEEEecCC
Q 048801 429 S-SVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVT--CSRDGSAIIWIPRS 505 (1715)
Q Consensus 429 ~-~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaS--gS~DGsIrIWDl~t 505 (1715)
. +. +..+.. ....+++++ ..+++ |+.||.|++||+.+
T Consensus 129 ~~~~---------~~~~~~---~~~~~~~s~----------------------------~~la~~sg~~~g~v~iwd~~~ 168 (355)
T 3vu4_A 129 PWKR---------ITDDIR---FGGVCEFSN----------------------------GLLVYSNEFNLGQIHITKLQS 168 (355)
T ss_dssp TCCB---------SSCCEE---EEEEEEEET----------------------------TEEEEEESSCTTCEEEEECCC
T ss_pred Ccee---------eEEecc---CCceEEEEc----------------------------cEEEEeCCCcCcEEEEEECCC
Confidence 4 21 222222 333444444 24444 68999999999986
Q ss_pred CccCcccccccccccccCCCCCCCCCCCCCCC-cccccCCCCCeeEEEeCCCCCEEEEEecCCe-EEEEECCCCceEEEE
Q 048801 506 RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP-RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCR-ICVWNAVDGSLVHSL 583 (1715)
Q Consensus 506 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~-~~~l~~h~~~VtslafSPDG~~LaTgs~DGt-I~IWDl~sg~~l~tL 583 (1715)
+........ ........+ ...+.+|...|++++|+|+|++|++|+.|++ |+|||+.+++++..+
T Consensus 169 ~~~~~~~~~--------------~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~ 234 (355)
T 3vu4_A 169 SGSATTQDQ--------------GVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF 234 (355)
T ss_dssp --------------------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred CCccccccc--------------cccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 431100000 000001122 5667889999999999999999999999998 999999999999999
Q ss_pred e-c-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceE--EE------------------EEc---ccceEEEEEE
Q 048801 584 T-G-HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPI--RI------------------YEI---GRFKLVDGKF 638 (1715)
Q Consensus 584 ~-g-H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l--~t------------------l~~---h~~~V~svaf 638 (1715)
. + |...|++++|+| ++.+|++++.||+|+|||+..+... .. +.. .......++|
T Consensus 235 ~~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (355)
T 3vu4_A 235 RRGLDRADVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW 313 (355)
T ss_dssp ECTTCCSCEEEEEECT-TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEE
T ss_pred EcCCCCCcEEEEEECC-CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEE
Confidence 8 6 999999999999 7889999999999999999765321 11 110 1112356899
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 639 SPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 639 SPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
++||++|++++.||.+++|++..++
T Consensus 314 ~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 314 ISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp SSSSEEEEEETTTTEEEEEEEEEET
T ss_pred eCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 9999999999999999999987654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-26 Score=281.81 Aligned_cols=320 Identities=13% Similarity=0.098 Sum_probs=246.6
Q ss_pred CCCeEEEE---EcCCCCEEEEE--------------eCCC--cEEEEeCCCC--cEEEEecCCCCCeEEEEECCCCCEEE
Q 048801 243 RDAVYCAI---FDRSGRFVITG--------------SDDR--LVKIWSMETA--FCLASCRGHEGDITDLAVSSNNTLVA 301 (1715)
Q Consensus 243 ~~~Vt~Va---fSpDG~~LaTG--------------S~DG--tIrIWDl~tg--k~l~tL~gHs~~VtsLafSpDg~lLA 301 (1715)
...+..++ |+|++..++.. +.++ .|.+||..++ +.+..+..+. .+.+++|+|++.+++
T Consensus 60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~ 138 (433)
T 3bws_A 60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAI 138 (433)
T ss_dssp TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEE
T ss_pred CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEE
Confidence 34456666 66666655443 2334 4444455445 5666666554 456999999888888
Q ss_pred EEeCCCeeEEEECCCCCceE-----EEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCC
Q 048801 302 SASNDFVIRVWRLPDGLPIS-----VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDA 376 (1715)
Q Consensus 302 SGS~DGtIrVWDl~tg~~l~-----~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~ 376 (1715)
+++.++.|++||+.+++.+. .+.+|.+.|.+++|++++. ++++++.|+.|++||+.+++.+..+.
T Consensus 139 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~s~~~d~~v~~~d~~~~~~~~~~~------- 208 (433)
T 3bws_A 139 PLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE---LWVSQMQANAVHVFDLKTLAYKATVD------- 208 (433)
T ss_dssp EBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE---EEEEEGGGTEEEEEETTTCCEEEEEE-------
T ss_pred EeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE---EEEEECCCCEEEEEECCCceEEEEEc-------
Confidence 88889999999999998887 3457889999999999886 88999999999999998876554432
Q ss_pred ccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEE-EecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEE
Q 048801 377 ITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFV-TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455 (1715)
Q Consensus 377 i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~La-tGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLa 455 (1715)
.+...+.+++|+|++..++ +++.++.|++||+.+++ .+..+..+ ..+.+++
T Consensus 209 ------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~---------~~~~~~~~-~~~~~~~ 260 (433)
T 3bws_A 209 ------------------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL---------EIRKTDKI-GLPRGLL 260 (433)
T ss_dssp ------------------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE---------EEEECCCC-SEEEEEE
T ss_pred ------------------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc---------EEEEecCC-CCceEEE
Confidence 2345689999999998774 55579999999997643 23444443 4589999
Q ss_pred EccCcccccccccccccccccccccCCcccCceEEEEc--------CCCeEEEEecCCCccCcccccccccccccCCCCC
Q 048801 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS--------RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPP 527 (1715)
Q Consensus 456 fspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS--------~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~ 527 (1715)
|+|++ ..|++++ .||.|++||+.+++...
T Consensus 261 ~~~~g--------------------------~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~----------------- 297 (433)
T 3bws_A 261 LSKDG--------------------------KELYIAQFSASNQESGGGRLGIYSMDKEKLID----------------- 297 (433)
T ss_dssp ECTTS--------------------------SEEEEEEEESCTTCSCCEEEEEEETTTTEEEE-----------------
T ss_pred EcCCC--------------------------CEEEEEECCCCccccCCCeEEEEECCCCcEEe-----------------
Confidence 99986 5777776 58999999998643211
Q ss_pred CCCCCCCCCCcccccCCCCCeeEEEeCCCCCEE-EEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEE
Q 048801 528 LPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFV-LAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSA 606 (1715)
Q Consensus 528 ~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~L-aTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSg 606 (1715)
...+...+.+++|+|+++.| ++++.++.|++||+.+++.+..+. +...+.+++|+| ++.+|+++
T Consensus 298 -------------~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dg~~l~~~ 362 (433)
T 3bws_A 298 -------------TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSP-DGKYLYVS 362 (433)
T ss_dssp -------------EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECT-TSSEEEEE
T ss_pred -------------eccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcC-CCCEEEEE
Confidence 12234468899999999755 666889999999999999888876 677899999999 56666666
Q ss_pred eC---------------CCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeC-CCeEEEEECC
Q 048801 607 GY---------------DGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDD-VGQIYLLNTG 660 (1715)
Q Consensus 607 s~---------------DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~-DG~I~IWdl~ 660 (1715)
+. ||.|++||+.+++.+..+.. ...+.+++|+|||++|++++. ||.|++|++.
T Consensus 363 ~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 363 CRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp ECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred ecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 54 57999999999999998885 457899999999999998875 9999999985
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=286.89 Aligned_cols=284 Identities=11% Similarity=0.040 Sum_probs=227.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC---ceEEEeC-------------------------------------
Q 048801 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGL---PISVLRG------------------------------------- 325 (1715)
Q Consensus 286 ~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~---~l~~L~g------------------------------------- 325 (1715)
.+|.+++|+++|++|+++ .++.|++||+.+|+ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578999999999977666 57899999999998 6665553
Q ss_pred -----------------CCCCeEEEEecCCCCcceE-EEEecCCCcEEEEecC--CCCCcceecCCCCCCCccCccCCCC
Q 048801 326 -----------------HTGAVTAIAFSPRPSAIYQ-LLSSSDDGTCRIWDAR--YSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 326 -----------------H~~~VtsLafSPdg~~~~~-LaSgS~DGtVrIWDl~--tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
|.+.|++++|+|++. + +++++.||.|++||+. ++..+..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~---~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~--------------- 145 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES---RLIACADSDKSLLVFDVDKTSKNVLKLRKR--------------- 145 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSS---EEEEEEGGGTEEEEEEECSSSSSCEEEEEE---------------
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCC---EEEEEECCCCeEEEEECcCCCCceeeeeec---------------
Confidence 333799999999998 5 4899999999999998 6665544321
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCce-eeeeecCCCCCeeEEEEccC---cc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIH-ELDVLSGHENDVNYVQFSGC---AV 461 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~-~l~~l~gH~~~V~sLafspd---g~ 461 (1715)
..+...|.+++|+|+|.+|++|+.+|.|++|++.++.. .. ....+.+|...|.+++|+|+ +
T Consensus 146 --------~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~------~~~~~~~~~~h~~~v~~~~~sp~~~~~- 210 (450)
T 2vdu_B 146 --------FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPE------EKFTQEPILGHVSMLTDVHLIKDSDGH- 210 (450)
T ss_dssp --------EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCC------SSCCCCCSEECSSCEEEEEEEECTTSC-
T ss_pred --------ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccc------ccccceeeecccCceEEEEEcCCCCCC-
Confidence 12345699999999999999999999999999987542 11 33467789999999999997 5
Q ss_pred cccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc-
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR- 540 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~- 540 (1715)
.+|++++.|+.|++||+.++.. ...
T Consensus 211 -------------------------~~l~s~~~d~~i~vwd~~~~~~-----------------------------~~~~ 236 (450)
T 2vdu_B 211 -------------------------QFIITSDRDEHIKISHYPQCFI-----------------------------VDKW 236 (450)
T ss_dssp -------------------------EEEEEEETTSCEEEEEESCTTC-----------------------------EEEE
T ss_pred -------------------------cEEEEEcCCCcEEEEECCCCce-----------------------------eeee
Confidence 6999999999999999986431 222
Q ss_pred ccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec-------------------------CCCCeEEEEE
Q 048801 541 LLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG-------------------------HSASSYVLDV 595 (1715)
Q Consensus 541 l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g-------------------------H~~~V~sLaf 595 (1715)
+.+|...|.+++|+ ++.+|++|+.|+.|+|||+.+++++..+.. +...|.+++|
T Consensus 237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 237 LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 34688899999999 999999999999999999999999988863 2457899999
Q ss_pred ccCCCcEEEEEe-CCCcEEEEEC--CCC---ceEEEEEcccceEEEEEEcCCCCEEEEEeC------CCeEEEEECC
Q 048801 596 HPFNPRIAMSAG-YDGRTIVWDI--WEG---TPIRIYEIGRFKLVDGKFSPDGTSIVLSDD------VGQIYLLNTG 660 (1715)
Q Consensus 596 SP~dg~lLaSgs-~DGtI~VWDl--~tg---k~l~tl~~h~~~V~svafSPDG~~LAsgs~------DG~I~IWdl~ 660 (1715)
+| ++.+|++++ .|+.|+||++ .++ +.+..+..+ ..|.+++|+|++.++++++. +..|.||.+.
T Consensus 316 ~~-~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 316 SK-NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp CS-SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred eC-CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 99 667777777 8999999999 666 677778866 78999999996543333332 4457777653
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=280.04 Aligned_cols=292 Identities=11% Similarity=0.116 Sum_probs=213.5
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEE-EEEeCCCeeE
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV-ASASNDFVIR 310 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lL-ASGS~DGtIr 310 (1715)
..+.+..+.+|.+.|+|++|+|||++||+|+.+| ++||++.++..+.....+ .+..+++.++++++ ++|+.|++|+
T Consensus 8 ~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~ 84 (355)
T 3vu4_A 8 TRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVH 84 (355)
T ss_dssp -----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEE
T ss_pred ccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEE
Confidence 3455667789999999999999999999998775 789999988776654432 57888999988877 5677889999
Q ss_pred EEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCC-CCcceecCCCCCCCccCccCCCCCCCC
Q 048801 311 VWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS-QYSPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 311 VWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg-~~l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
|||+.+++++..+. |...|.+++|+++. ++++ .|+.|++||+.++ +.+..+..
T Consensus 85 iWd~~~~~~~~~~~-~~~~v~~v~~~~~~-----~~~~-~~~~i~i~d~~~~~~~~~~~~~------------------- 138 (355)
T 3vu4_A 85 IWDDVKKQDVSRIK-VDAPVKDLFLSREF-----IVVS-YGDVISVFKFGNPWKRITDDIR------------------- 138 (355)
T ss_dssp EEETTTTEEEEEEE-CSSCEEEEEECSSE-----EEEE-ETTEEEEEESSTTCCBSSCCEE-------------------
T ss_pred EEECCCCcEEEEEE-CCCceEEEEEcCCE-----EEEE-EcCEEEEEECCCCceeeEEecc-------------------
Confidence 99999999999887 67799999999863 3333 4789999999876 43322210
Q ss_pred CCCCCCCCcceeEEEEccCCCeEEE--ecCCCeEEEEeCCCCCccCCC------CCcee-eeeecCCCCCeeEEEEccCc
Q 048801 390 SSSNGLQSHQILCCAYNANGTVFVT--GSSDTFARVWSACKSSVEDSE------QPIHE-LDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpdG~~Lat--Gs~DG~IrVWDl~t~~~~~~~------~~~~~-l~~l~gH~~~V~sLafspdg 460 (1715)
....+++++ .++++ |+.+|.|++||+.++...... ....+ +..+.+|...|.+++|+|++
T Consensus 139 ---------~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g 207 (355)
T 3vu4_A 139 ---------FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS 207 (355)
T ss_dssp ---------EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS
T ss_pred ---------CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC
Confidence 234566666 55555 688999999999864311000 00112 67789999999999999987
Q ss_pred ccccccccccccccccccccCCcccCceEEEEcCCCe-EEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcc
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGS-AIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQ 539 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGs-IrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~ 539 (1715)
.+|++|+.||+ |++||+.+++. +.
T Consensus 208 --------------------------~~l~s~s~d~~~v~iwd~~~~~~-----------------------------~~ 232 (355)
T 3vu4_A 208 --------------------------DMVATCSQDGTIIRVFKTEDGVL-----------------------------VR 232 (355)
T ss_dssp --------------------------SEEEEEETTCSEEEEEETTTCCE-----------------------------EE
T ss_pred --------------------------CEEEEEeCCCCEEEEEECCCCcE-----------------------------EE
Confidence 79999999998 99999987442 22
Q ss_pred ccc-C-CCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceE--EEEe---------------------cCCCCeEEEE
Q 048801 540 RLL-P-TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLV--HSLT---------------------GHSASSYVLD 594 (1715)
Q Consensus 540 ~l~-~-h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l--~tL~---------------------gH~~~V~sLa 594 (1715)
.+. + |...|.+++|+|+|++|++++.|++|+|||+..+... ..+. .+......++
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 312 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIA 312 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEE
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEE
Confidence 333 3 7889999999999999999999999999999765311 1110 1122346789
Q ss_pred EccCCCcEEEEEeCCCcEEEEECCC
Q 048801 595 VHPFNPRIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 595 fSP~dg~lLaSgs~DGtI~VWDl~t 619 (1715)
|++ ++.+|++++.||.+++|++..
T Consensus 313 ~~~-d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 313 WIS-ESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp ESS-SSEEEEEETTTTEEEEEEEEE
T ss_pred EeC-CCCEEEEEeCCCeEEEEEEEc
Confidence 999 778888999999999999754
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-27 Score=288.01 Aligned_cols=263 Identities=20% Similarity=0.299 Sum_probs=217.4
Q ss_pred EEecCCCCCeEEEEECCC-CCEEEEEeCCCeeEEEECCC----------CCceEEEeCCCCCeEEEEecCCCCcceEEEE
Q 048801 279 ASCRGHEGDITDLAVSSN-NTLVASASNDFVIRVWRLPD----------GLPISVLRGHTGAVTAIAFSPRPSAIYQLLS 347 (1715)
Q Consensus 279 ~tL~gHs~~VtsLafSpD-g~lLASGS~DGtIrVWDl~t----------g~~l~~L~gH~~~VtsLafSPdg~~~~~LaS 347 (1715)
..+.+|.+.|++++|+|+ +.+||+|+.||.|+||++.+ ..++..+.+|...|++|+|+|++.. +|++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~--~l~s 199 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG--YLLS 199 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT--EEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC--eEEE
Confidence 455679999999999997 78999999999999999986 6788899999999999999998764 7999
Q ss_pred ecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeC
Q 048801 348 SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSA 426 (1715)
Q Consensus 348 gS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl 426 (1715)
|+.||.|++|++..+........ .......|...|.+++|+| ++.+|++++.||.|++||+
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~------------------~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~ 261 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVID------------------AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDT 261 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEE------------------CSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred EeCCCeEEEEeCCCCCCCCceec------------------cceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEEC
Confidence 99999999999987532211100 0111234677899999999 6789999999999999999
Q ss_pred CCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCC
Q 048801 427 CKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 506 (1715)
Q Consensus 427 ~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~ 506 (1715)
++... ...+..+..|...|++++|+|++ ...|++|+.||.|++||+++.
T Consensus 262 ~~~~~------~~~~~~~~~~~~~v~~i~~~p~~-------------------------~~~l~tg~~dg~v~vwd~~~~ 310 (430)
T 2xyi_A 262 RNNNT------SKPSHTVDAHTAEVNCLSFNPYS-------------------------EFILATGSADKTVALWDLRNL 310 (430)
T ss_dssp TCSCS------SSCSEEEECCSSCEEEEEECSSC-------------------------TTEEEEEETTSEEEEEETTCT
T ss_pred CCCCC------CcceeEeecCCCCeEEEEeCCCC-------------------------CCEEEEEeCCCeEEEEeCCCC
Confidence 86421 23455667899999999999976 347999999999999999852
Q ss_pred ccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC-EEEEEecCCeEEEEECCC---------
Q 048801 507 RSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR-FVLAAIMDCRICVWNAVD--------- 576 (1715)
Q Consensus 507 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~-~LaTgs~DGtI~IWDl~s--------- 576 (1715)
. .++..+..|...|.+++|+|++. +|++++.|+.|+|||+..
T Consensus 311 ~----------------------------~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 362 (430)
T 2xyi_A 311 K----------------------------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED 362 (430)
T ss_dssp T----------------------------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHH
T ss_pred C----------------------------CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccc
Confidence 1 23445667888999999999995 689999999999999987
Q ss_pred -----CceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC
Q 048801 577 -----GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 577 -----g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
.+++..+.+|...|++++|+|++..+|++++.||.|+||++..+
T Consensus 363 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 363 AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 46788888999999999999965559999999999999998643
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-26 Score=283.87 Aligned_cols=272 Identities=17% Similarity=0.282 Sum_probs=217.8
Q ss_pred EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 321 SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 321 ~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
..+..|.+.|++++|+|++.. +|++++.||.|++||+........ . ............|...|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~--~lat~~~dg~V~vwd~~~~~~~~~-----~----------~~~~~~~~~~~~h~~~v 184 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNAC--VIATKTPSSDVLVFDYTKHPSKPE-----P----------SGECQPDLRLRGHQKEG 184 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEE--EEEEECSSSCEEEEEGGGSCSSCC-----T----------TCCCCCSEEEECCSSCC
T ss_pred EEEEcCCCcEEEEEECCCCCc--EEEEECCCCcEEEEECCCcccccC-----c----------cccCCCcEEecCCCCCe
Confidence 445679999999999997432 899999999999999975321100 0 00011222334577789
Q ss_pred eEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccc
Q 048801 401 LCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKF 479 (1715)
Q Consensus 401 tslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~ 479 (1715)
.+++|+|++. +|++|+.||.|++|++..+... .........+.+|...|.+++|+|..
T Consensus 185 ~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~h~~~v~~v~~~p~~------------------- 243 (430)
T 2xyi_A 185 YGLSWNPNLNGYLLSASDDHTICLWDINATPKE--HRVIDAKNIFTGHTAVVEDVAWHLLH------------------- 243 (430)
T ss_dssp CCEEECTTSTTEEEEECTTSCEEEEETTSCCBG--GGEEECSEEECCCSSCEEEEEECSSC-------------------
T ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCC--CceeccceeecCCCCCEeeeEEeCCC-------------------
Confidence 9999999998 9999999999999999864210 01122345677899999999999954
Q ss_pred cCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC-
Q 048801 480 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR- 558 (1715)
Q Consensus 480 ~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~- 558 (1715)
...|++++.||.|++||+++... ......+..|...|++++|+|++.
T Consensus 244 ------~~~l~s~~~dg~i~i~d~~~~~~--------------------------~~~~~~~~~~~~~v~~i~~~p~~~~ 291 (430)
T 2xyi_A 244 ------ESLFGSVADDQKLMIWDTRNNNT--------------------------SKPSHTVDAHTAEVNCLSFNPYSEF 291 (430)
T ss_dssp ------TTEEEEEETTSEEEEEETTCSCS--------------------------SSCSEEEECCSSCEEEEEECSSCTT
T ss_pred ------CCEEEEEeCCCeEEEEECCCCCC--------------------------CcceeEeecCCCCeEEEEeCCCCCC
Confidence 37899999999999999986320 123344557888999999999997
Q ss_pred EEEEEecCCeEEEEECCC-CceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC--------------CceE
Q 048801 559 FVLAAIMDCRICVWNAVD-GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE--------------GTPI 623 (1715)
Q Consensus 559 ~LaTgs~DGtI~IWDl~s-g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t--------------gk~l 623 (1715)
+|++|+.||.|+|||+.+ +.++..+.+|...|++++|+|++..+|++++.||.|+|||+.. .+++
T Consensus 292 ~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 371 (430)
T 2xyi_A 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 371 (430)
T ss_dssp EEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEE
T ss_pred EEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceE
Confidence 688999999999999998 5678999999999999999997778999999999999999976 3677
Q ss_pred EEEEcccceEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC
Q 048801 624 RIYEIGRFKLVDGKFSPDGT-SIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 624 ~tl~~h~~~V~svafSPDG~-~LAsgs~DG~I~IWdl~tG 662 (1715)
..+.+|...|.+++|+|++. +|++++.||.|.||++..+
T Consensus 372 ~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 372 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 77778888999999999999 8999999999999999755
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-26 Score=278.36 Aligned_cols=291 Identities=11% Similarity=0.086 Sum_probs=235.2
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEE-----EecCCCCCeEEEEECCCCCEEEEEeCCC
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLA-----SCRGHEGDITDLAVSSNNTLVASASNDF 307 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~-----tL~gHs~~VtsLafSpDg~lLASGS~DG 307 (1715)
.+.+..+..|. .+.+++|+|++.++++++.|+.|++||+.+++.+. .+.+|.+.|.+++|++++.++++++.|+
T Consensus 113 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~ 191 (433)
T 3bws_A 113 HRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQAN 191 (433)
T ss_dssp EEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT
T ss_pred ceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCC
Confidence 35666676665 45699999988888888889999999999999887 4568999999999999999999999999
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
.|++||+.+++.+..+..|...+.+++|+|++.. .+++++.|+.|++||+.+++.+..+..
T Consensus 192 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~i~~~d~~~~~~~~~~~~----------------- 252 (433)
T 3bws_A 192 AVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDL--VYCSNWISEDISVIDRKTKLEIRKTDK----------------- 252 (433)
T ss_dssp EEEEEETTTCCEEEEEECSSSSEEEEEEETTTTE--EEEEETTTTEEEEEETTTTEEEEECCC-----------------
T ss_pred EEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCE--EEEEecCCCcEEEEECCCCcEEEEecC-----------------
Confidence 9999999999999999999999999999999872 345666899999999988765433211
Q ss_pred CCCCCCCCCCcceeEEEEccCCCeEEEec--------CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccC
Q 048801 388 GPSSSNGLQSHQILCCAYNANGTVFVTGS--------SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGC 459 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSpdG~~LatGs--------~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspd 459 (1715)
...+.+++|+|+|++|++++ .||.|++||+.+++. +.. ..|...+.+++|+|+
T Consensus 253 ---------~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~---------~~~-~~~~~~~~~~~~~~~ 313 (433)
T 3bws_A 253 ---------IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL---------IDT-IGPPGNKRHIVSGNT 313 (433)
T ss_dssp ---------CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE---------EEE-EEEEECEEEEEECSS
T ss_pred ---------CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE---------Eee-ccCCCCcceEEECCC
Confidence 23489999999999999887 589999999986532 222 244557889999998
Q ss_pred cccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcc
Q 048801 460 AVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQ 539 (1715)
Q Consensus 460 g~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~ 539 (1715)
+ ...+++++.|+.|.+||+.+++...
T Consensus 314 g-------------------------~~l~~~~~~~~~v~v~d~~~~~~~~----------------------------- 339 (433)
T 3bws_A 314 E-------------------------NKIYVSDMCCSKIEVYDLKEKKVQK----------------------------- 339 (433)
T ss_dssp T-------------------------TEEEEEETTTTEEEEEETTTTEEEE-----------------------------
T ss_pred C-------------------------CEEEEEecCCCEEEEEECCCCcEEE-----------------------------
Confidence 6 2466788999999999998644211
Q ss_pred cccCCCCCeeEEEeCCCCCEEEEEec---------------CCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEE
Q 048801 540 RLLPTPRGVNMIVWSLDNRFVLAAIM---------------DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAM 604 (1715)
Q Consensus 540 ~l~~h~~~VtslafSPDG~~LaTgs~---------------DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLa 604 (1715)
...+...+.+++|+|+|++|++++. ||.|++||+.+++.+..+..+ ..+.+++|+| ++.+|+
T Consensus 340 -~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~ 416 (433)
T 3bws_A 340 -SIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSP-DNRYLV 416 (433)
T ss_dssp -EEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSCEEE
T ss_pred -EecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcC-CCCEEE
Confidence 1124456889999999999988876 579999999999999988864 5789999999 556665
Q ss_pred EEe-CCCcEEEEECCC
Q 048801 605 SAG-YDGRTIVWDIWE 619 (1715)
Q Consensus 605 Sgs-~DGtI~VWDl~t 619 (1715)
+++ .|+.|++|++..
T Consensus 417 ~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 417 ISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEETTTTEEEEEEETT
T ss_pred EEECCCCeEEEEEecC
Confidence 555 599999999853
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=277.80 Aligned_cols=275 Identities=8% Similarity=0.001 Sum_probs=211.5
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCe
Q 048801 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAV 330 (1715)
Q Consensus 251 fSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~V 330 (1715)
+.+++.+|++|+.||.|+|||+.+++.+..+. ...|.+++|+|+ +++|+.|++|++|+...
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~-------------- 104 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN-------------- 104 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT--------------
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC--------------
Confidence 44678899999999999999999998888776 567888888888 88999999999998753
Q ss_pred EEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc--C
Q 048801 331 TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA--N 408 (1715)
Q Consensus 331 tsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp--d 408 (1715)
.+.+|++.+++.+..+.. .|...|.+++|+| +
T Consensus 105 ----------------------~~~~~~~~~~~~~~~~~~------------------------~~~~~v~~~~~~~~~~ 138 (343)
T 3lrv_A 105 ----------------------QITILDSKTNKVLREIEV------------------------DSANEIIYMYGHNEVN 138 (343)
T ss_dssp ----------------------EEEEEETTTCCEEEEEEC------------------------CCSSCEEEEECCC---
T ss_pred ----------------------ceEEeecCCcceeEEeec------------------------CCCCCEEEEEcCCCCC
Confidence 245566655543332211 2345699999999 9
Q ss_pred CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee-cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCc
Q 048801 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL-SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHD 487 (1715)
Q Consensus 409 G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l-~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~ 487 (1715)
+.+|++|+.||.|++||+.+++. +... ..|...|.+++|+|++ .
T Consensus 139 ~~~l~s~s~dg~i~~wd~~~~~~---------~~~~~~~~~~~i~~~~~~pdg--------------------------~ 183 (343)
T 3lrv_A 139 TEYFIWADNRGTIGFQSYEDDSQ---------YIVHSAKSDVEYSSGVLHKDS--------------------------L 183 (343)
T ss_dssp CCEEEEEETTCCEEEEESSSSCE---------EEEECCCSSCCCCEEEECTTS--------------------------C
T ss_pred CCEEEEEeCCCcEEEEECCCCcE---------EEEEecCCCCceEEEEECCCC--------------------------C
Confidence 99999999999999999987532 3333 3455689999999986 7
Q ss_pred eEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccC-CCCCeeEEEeCCCCCEEEEEecC
Q 048801 488 NIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLP-TPRGVNMIVWSLDNRFVLAAIMD 566 (1715)
Q Consensus 488 ~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~-h~~~VtslafSPDG~~LaTgs~D 566 (1715)
+|++|+.||.|++||++++... ...+.. |...|++++|+|+|.+|++++ +
T Consensus 184 ~lasg~~dg~i~iwd~~~~~~~----------------------------~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~ 234 (343)
T 3lrv_A 184 LLALYSPDGILDVYNLSSPDQA----------------------------SSRFPVDEEAKIKEVKFADNGYWMVVEC-D 234 (343)
T ss_dssp EEEEECTTSCEEEEESSCTTSC----------------------------CEECCCCTTSCEEEEEECTTSSEEEEEE-S
T ss_pred EEEEEcCCCEEEEEECCCCCCC----------------------------ccEEeccCCCCEEEEEEeCCCCEEEEEe-C
Confidence 9999999999999999874421 022344 788999999999999999999 5
Q ss_pred CeEEEEECCCCceEEEEec---CCCCeE--EEEEccCCCcEEEEEeC-CCcEEEEECCCCceEEEEEcccceEEEEEEcC
Q 048801 567 CRICVWNAVDGSLVHSLTG---HSASSY--VLDVHPFNPRIAMSAGY-DGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSP 640 (1715)
Q Consensus 567 GtI~IWDl~sg~~l~tL~g---H~~~V~--sLafSP~dg~lLaSgs~-DGtI~VWDl~tgk~l~tl~~h~~~V~svafSP 640 (1715)
+.|+|||+++++.+..+.. |...+. +++|+| ++.+|++++. |+.|+||++..+...... .++..++|++
T Consensus 235 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~ 309 (343)
T 3lrv_A 235 QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQS 309 (343)
T ss_dssp SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC--
T ss_pred CeEEEEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCc
Confidence 5999999999887655543 434443 699999 7788888888 999999999766544333 5678889999
Q ss_pred ---CCCEEEEEeCCCeEEEEEC
Q 048801 641 ---DGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 641 ---DG~~LAsgs~DG~I~IWdl 659 (1715)
++..|++++.||.+.++-.
T Consensus 310 ~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 310 DTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp --CCCCEEEEEEETTEEEEEEE
T ss_pred cccccceeEEEecCCceEEEEe
Confidence 9999999999999998864
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=282.94 Aligned_cols=264 Identities=13% Similarity=0.098 Sum_probs=174.3
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE-----EEeCCCCCeEEEEecC--------CCCcceEEEEecCCC
Q 048801 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS-----VLRGHTGAVTAIAFSP--------RPSAIYQLLSSSDDG 352 (1715)
Q Consensus 286 ~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~-----~L~gH~~~VtsLafSP--------dg~~~~~LaSgS~DG 352 (1715)
..+....+++++.+||+|+.|++|+|||+.++.... .+.+|.+.|++|+|+| ++. +|++++.|+
T Consensus 90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~---~las~s~D~ 166 (393)
T 4gq1_A 90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ---VIASVGDDC 166 (393)
T ss_dssp -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE---EEEEEETTS
T ss_pred CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC---EEEEEECCC
Confidence 333344445567789999999999999998886533 3578999999999998 444 899999999
Q ss_pred cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCc
Q 048801 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 353 tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~ 431 (1715)
+|+|||+.++..+..+ ..|...|.+++|+|++ .+|++|+.||.|++||+.+++.
T Consensus 167 tv~~Wd~~~~~~~~~~-------------------------~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~ 221 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAG-------------------------YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLS 221 (393)
T ss_dssp EEEEEEEETTEEEEEE-------------------------EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-
T ss_pred eEEEEECCCCceeeee-------------------------cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcc
Confidence 9999999876543322 2245679999999987 4899999999999999987532
Q ss_pred cCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcc
Q 048801 432 EDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGK 511 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~ 511 (1715)
... .......+...+....+.+.
T Consensus 222 ~~~-----~~~~~~~~~~~~~s~~~~~~---------------------------------------------------- 244 (393)
T 4gq1_A 222 AEE-----NSQTELVKNPWLLTLNTLPL---------------------------------------------------- 244 (393)
T ss_dssp --------------CSCCCSEEEESGGG----------------------------------------------------
T ss_pred ccc-----ccccCCcccceEEecccccc----------------------------------------------------
Confidence 100 00000111111111111000
Q ss_pred cccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC-CCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCe
Q 048801 512 VGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS-LDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASS 590 (1715)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS-PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V 590 (1715)
.......+|...|.++.|+ ++|..|++++.|++|++||+..+.....+..|...+
T Consensus 245 ------------------------~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~ 300 (393)
T 4gq1_A 245 ------------------------VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKL 300 (393)
T ss_dssp ------------------------C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------
T ss_pred ------------------------eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCcc
Confidence 0001123456678889986 899999999999999999999888777776665555
Q ss_pred EEEEEc------------------c-CCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCC
Q 048801 591 YVLDVH------------------P-FNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDV 651 (1715)
Q Consensus 591 ~sLafS------------------P-~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~D 651 (1715)
..+.+. | .++.++++|+.||+|+|||+.+++++..+..|..+|.+++|||||++||+++.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~ 380 (393)
T 4gq1_A 301 GPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEG 380 (393)
T ss_dssp ---CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESS
T ss_pred ccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 444332 2 245577888899999999999999999888899999999999999999999876
Q ss_pred CeEEEEEC
Q 048801 652 GQIYLLNT 659 (1715)
Q Consensus 652 G~I~IWdl 659 (1715)
| +.+|.+
T Consensus 381 G-v~lvrL 387 (393)
T 4gq1_A 381 S-VLLTRL 387 (393)
T ss_dssp E-EEEEEE
T ss_pred C-eEEEEE
Confidence 6 555543
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=282.92 Aligned_cols=288 Identities=12% Similarity=0.076 Sum_probs=190.5
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEE-----EEecCCCCCeEEEEECC--------CCCEEEEEeC
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCL-----ASCRGHEGDITDLAVSS--------NNTLVASASN 305 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l-----~tL~gHs~~VtsLafSp--------Dg~lLASGS~ 305 (1715)
..+|...+....+++++.+||+|+.|++|+|||+.++... ..+.||.+.|++|+|+| |+++||+|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 4456666777777888899999999999999999988653 34689999999999998 8899999999
Q ss_pred CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 306 DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 306 DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
|++|+|||+.++.++..+.+|...|.+++|+|++.. +|++++.||+|++||+.+++......................
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~--~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~ 242 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPN--QLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL 242 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEE--EEEEEETTSEEEEEETTCCC----------CSCCCSEEEESG
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCc--eEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccc
Confidence 999999999999888888889999999999998753 799999999999999998775433221110000000000000
Q ss_pred CCCCCCCCCCCCcceeEEEEc-cCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccc
Q 048801 386 NNGPSSSNGLQSHQILCCAYN-ANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASR 464 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafS-pdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~ 464 (1715)
..........|...+.+++|+ ++|..|++++.|+.+++||+..+. ....+..|...+..+.+.++..
T Consensus 243 ~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~---------~~~~l~~~~~~~~~~~~~~~~~--- 310 (393)
T 4gq1_A 243 PLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN---------DYNEISDSTMKLGPKNLLPNVQ--- 310 (393)
T ss_dssp GGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------------CCSCSEE---
T ss_pred cceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC---------CCceEeeecCccccEEEccccc---
Confidence 111122234567789999987 799999999999999999997643 2344556666666665555420
Q ss_pred ccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCC
Q 048801 465 SAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPT 544 (1715)
Q Consensus 465 ~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h 544 (1715)
.+ ..+
T Consensus 311 -----------------------~~----------------------------------------------------~~~ 315 (393)
T 4gq1_A 311 -----------------------GI----------------------------------------------------SLF 315 (393)
T ss_dssp -----------------------EE----------------------------------------------------CSS
T ss_pred -----------------------cc----------------------------------------------------ccc
Confidence 00 000
Q ss_pred CCCeeEEEeCC-CCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 545 PRGVNMIVWSL-DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 545 ~~~VtslafSP-DG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
...+..+.+.+ ++.++++|+.||.|+|||+.+++++..+.+|..+|++|+|+| ++++||+++.+| +.+|.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp-dG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 316 PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT-TSSEEEEEESSE-EEEEEE
T ss_pred CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEEE
Confidence 11122222333 455677888999999999999999999999999999999999 788999998776 666655
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=305.84 Aligned_cols=272 Identities=17% Similarity=0.224 Sum_probs=212.8
Q ss_pred EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC--CCCceEEEeCCCCCeEEEEecCC--CCcceEEEEecCCCc
Q 048801 278 LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP--DGLPISVLRGHTGAVTAIAFSPR--PSAIYQLLSSSDDGT 353 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~--tg~~l~~L~gH~~~VtsLafSPd--g~~~~~LaSgS~DGt 353 (1715)
+..+.+|.+.|++++|+|++++|++|+.||+|+|||+. ++..+..+.+|.+.|++++|+|+ +. +|++|+.||.
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~---~l~s~s~Dg~ 78 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT---ILASCSYDGK 78 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCS---EEEEEETTSC
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCC---EEEEEeCCCe
Confidence 45678999999999999999999999999999999998 55778889999999999999987 65 8999999999
Q ss_pred EEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC--CCeEEEecCCCeEEEEeCCCCCc
Q 048801 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN--GTVFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 354 VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd--G~~LatGs~DG~IrVWDl~t~~~ 431 (1715)
|++||+.++....... ...|...|.+++|+|+ +.+|++|+.||.|++||+.++..
T Consensus 79 I~vwd~~~~~~~~~~~-----------------------~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~ 135 (753)
T 3jro_A 79 VLIWKEENGRWSQIAV-----------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 135 (753)
T ss_dssp EEEEEEETTEEEEEEE-----------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC
T ss_pred EEEEECCCCccccccc-----------------------ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC
Confidence 9999998765221111 1235677999999999 99999999999999999987532
Q ss_pred cCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcc
Q 048801 432 EDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGK 511 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~ 511 (1715)
.....+.+|...|.+++|+|........ .....++..|++|+.||.|++||++++....
T Consensus 136 -------~~~~~~~~~~~~v~~l~~~p~~~~~~~~-------------~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~- 194 (753)
T 3jro_A 136 -------TSPIIIDAHAIGVNSASWAPATIEEDGE-------------HNGTKESRKFVTGGADNLVKIWKYNSDAQTY- 194 (753)
T ss_dssp -------CCCEEEECCSSCEEEEEECCCC----------------------CGGGCCEEEEETTSCEEEEEEETTTTEE-
T ss_pred -------cceeEeecCCCceEEEEecCcccccccc-------------cccCCCCCEEEEEECCCeEEEEeccCCcccc-
Confidence 2234567899999999999952100000 0000124789999999999999998642110
Q ss_pred cccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC---CCEEEEEecCCeEEEEECCCCc-----eEEEE
Q 048801 512 VGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD---NRFVLAAIMDCRICVWNAVDGS-----LVHSL 583 (1715)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD---G~~LaTgs~DGtI~IWDl~sg~-----~l~tL 583 (1715)
.....+.+|...|++++|+|+ +.+|++|+.||.|+|||+.++. .+...
T Consensus 195 ------------------------~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~ 250 (753)
T 3jro_A 195 ------------------------VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE 250 (753)
T ss_dssp ------------------------EEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSS
T ss_pred ------------------------eeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEecc
Confidence 122345678899999999999 9999999999999999998874 33344
Q ss_pred ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 584 TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 584 ~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
.+|...|++++|+| ++.+|++|+.||.|+||++.++.
T Consensus 251 ~~~~~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 251 EKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SCCSSCCCCEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCCceEEEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence 56889999999999 77888999999999999998543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-24 Score=260.70 Aligned_cols=319 Identities=13% Similarity=0.095 Sum_probs=242.1
Q ss_pred ccccccceeEEEEcCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEE-e
Q 048801 227 STMVQKMQNIKKLRGHRDAVYCAIFDRSGRFV-ITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASA-S 304 (1715)
Q Consensus 227 ~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~L-aTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASG-S 304 (1715)
.+.....+.+..+.+|.. +.+++|+|+|++| ++++.|+.|++||+.+++.+..+..+. .|.+++|+|++++|+++ +
T Consensus 16 v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~ 93 (391)
T 1l0q_A 16 VIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNM 93 (391)
T ss_dssp EEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEET
T ss_pred EEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEEC
Confidence 344556778888888865 8999999999987 677789999999999999999888665 89999999999987654 5
Q ss_pred CCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 305 NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 305 ~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
.++.|++||+.+++.+..+..| ..+.+++|+|++.. ++++++.++.|++||+.+++....+..
T Consensus 94 ~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~--l~~~~~~~~~v~~~d~~~~~~~~~~~~-------------- 156 (391)
T 1l0q_A 94 ASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKK--LYVTNNGDKTVSVINTVTKAVINTVSV-------------- 156 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSE--EEEEETTTTEEEEEETTTTEEEEEEEC--------------
T ss_pred CCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCE--EEEEeCCCCEEEEEECCCCcEEEEEec--------------
Confidence 6799999999999988888754 57899999999872 347888899999999988876544321
Q ss_pred CCCCCCCCCCCCCcceeEEEEccCCCeE-EEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccc
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNANGTVF-VTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVAS 463 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSpdG~~L-atGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as 463 (1715)
...+.+++|+|+|+.| ++++.++.|++||+.+++ .+..+. +...+.+++|+|++
T Consensus 157 ------------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~---------~~~~~~-~~~~~~~~~~~~~g--- 211 (391)
T 1l0q_A 157 ------------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS---------VIDTVK-VEAAPSGIAVNPEG--- 211 (391)
T ss_dssp ------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---------EEEEEE-CSSEEEEEEECTTS---
T ss_pred ------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe---------EEEEEe-cCCCccceEECCCC---
Confidence 2346899999999877 677889999999998743 233333 45678999999986
Q ss_pred cccccccccccccccccCCcccCceEEEEc---CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 464 RSAMSDAFKEENVPKFKNSWFCHDNIVTCS---RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS---~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
..|++++ .++.|.+||+.+++... .
T Consensus 212 -----------------------~~l~~~~~~~~~~~v~~~d~~~~~~~~-----------------------------~ 239 (391)
T 1l0q_A 212 -----------------------TKAYVTNVDKYFNTVSMIDTGTNKITA-----------------------------R 239 (391)
T ss_dssp -----------------------SEEEEEEECSSCCEEEEEETTTTEEEE-----------------------------E
T ss_pred -----------------------CEEEEEecCcCCCcEEEEECCCCeEEE-----------------------------E
Confidence 5677666 79999999998643211 1
Q ss_pred ccCCCCCeeEEEeCCCCCEE-EEEecCCeEEEEECCCCceEEEEecCCCCeE---EEE------------EccCC-----
Q 048801 541 LLPTPRGVNMIVWSLDNRFV-LAAIMDCRICVWNAVDGSLVHSLTGHSASSY---VLD------------VHPFN----- 599 (1715)
Q Consensus 541 l~~h~~~VtslafSPDG~~L-aTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~---sLa------------fSP~d----- 599 (1715)
+.. ...+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..|..+.. .+. |+...
T Consensus 240 ~~~-~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~ 318 (391)
T 1l0q_A 240 IPV-GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYI 318 (391)
T ss_dssp EEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEE
T ss_pred Eec-CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccc
Confidence 122 2357889999999987 5668899999999999999999887655421 122 22210
Q ss_pred ----CcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEE
Q 048801 600 ----PRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLS 648 (1715)
Q Consensus 600 ----g~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsg 648 (1715)
...+...+.|..+++|++.+|... .+..+ ...|+++|.+.++.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~W~~~~g~~~----~~~~~--~~~~~~~g~y~~~~ 365 (391)
T 1l0q_A 319 FLSEPVQFTDLSKDATEWKWDFGDGSSS----KKQNP--THTYSETGIYTVRL 365 (391)
T ss_dssp ETTCCEEEEECCBSCSEEEEECSSSCEE----CSSSC--EECCSSCEEEEEEE
T ss_pred cccceEEEEeCCCCceEEEEECCCCccc----CcCCC--eEEeCCCceEEEEE
Confidence 134556667889999999888642 22223 35799999988743
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9e-25 Score=279.38 Aligned_cols=348 Identities=10% Similarity=0.066 Sum_probs=263.7
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEEC--CCCCceEEEeCCCC
Q 048801 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL--PDGLPISVLRGHTG 328 (1715)
Q Consensus 251 fSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl--~tg~~l~~L~gH~~ 328 (1715)
|+|++.++++++.|++|.+||..+++++.++..+.. +.+++|+|||++|++++.|++|.+||+ .+++.+..+. +..
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~ 222 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGI 222 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCS
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCC
Confidence 789999999999999999999999999999984333 899999999999999999999999999 8888888888 456
Q ss_pred CeEEEEecC----CCCcceEEEEec-CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC-CcceeE
Q 048801 329 AVTAIAFSP----RPSAIYQLLSSS-DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ-SHQILC 402 (1715)
Q Consensus 329 ~VtsLafSP----dg~~~~~LaSgS-~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h-~~~Vts 402 (1715)
.+..++|+| +++ +|++++ .+++|.+||..+++.+..+...... . .....| ...+.+
T Consensus 223 ~p~~va~sp~~~~dg~---~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~--~-------------~~~~~~~~~~v~~ 284 (543)
T 1nir_A 223 EARSVESSKFKGYEDR---YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT--V-------------DTQTYHPEPRVAA 284 (543)
T ss_dssp EEEEEEECCSTTCTTT---EEEEEEEESSEEEEEETTTCCEEEEEECCEEC--S-------------SSCCEESCCCEEE
T ss_pred CcceEEeCCCcCCCCC---EEEEEEccCCeEEEEeccccccceeecccCcc--c-------------CccccccCCceEE
Confidence 689999999 988 677776 5899999999988877665431100 0 000011 236889
Q ss_pred EEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccC
Q 048801 403 CAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 403 lafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
+.++|++. ++++...++.|.+||+.+.+. .. +..+ .+...+..++|+|++
T Consensus 285 i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~------l~-~~~i-~~~~~~~~~~~spdg--------------------- 335 (543)
T 1nir_A 285 IIASHEHPEFIVNVKETGKVLLVNYKDIDN------LT-VTSI-GAAPFLHDGGWDSSH--------------------- 335 (543)
T ss_dssp EEECSSSSEEEEEETTTTEEEEEECTTSSS------CE-EEEE-ECCSSCCCEEECTTS---------------------
T ss_pred EEECCCCCEEEEEECCCCeEEEEEecCCCc------ce-eEEe-ccCcCccCceECCCC---------------------
Confidence 99999765 566777889999999976432 11 1222 345678889999987
Q ss_pred CcccCce-EEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC-CCE
Q 048801 482 SWFCHDN-IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD-NRF 559 (1715)
Q Consensus 482 s~~~~~~-LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD-G~~ 559 (1715)
++ ++++..+++|.+||+.++++...+.. ....|.+....+ ++|+ |.+
T Consensus 336 -----~~l~va~~~~~~v~v~D~~tg~l~~~i~~-------------------------g~~ph~g~g~~~-~~p~~g~~ 384 (543)
T 1nir_A 336 -----RYFMTAANNSNKVAVIDSKDRRLSALVDV-------------------------GKTPHPGRGANF-VHPKYGPV 384 (543)
T ss_dssp -----CEEEEEEGGGTEEEEEETTTTEEEEEEEC-------------------------SSSBCCTTCEEE-EETTTEEE
T ss_pred -----CEEEEEecCCCeEEEEECCCCeEEEeecc-------------------------CCCCCCCCCccc-CCCCCccE
Confidence 44 45666799999999998654322100 001233322233 4677 666
Q ss_pred EEEEe-cCCeEEEEECCC-------CceEEEEecCCCCeEEEEEccCCCcEEEEEe-------CCCcEEEEECCCCceE-
Q 048801 560 VLAAI-MDCRICVWNAVD-------GSLVHSLTGHSASSYVLDVHPFNPRIAMSAG-------YDGRTIVWDIWEGTPI- 623 (1715)
Q Consensus 560 LaTgs-~DGtI~IWDl~s-------g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs-------~DGtI~VWDl~tgk~l- 623 (1715)
++++. .|++|.|||+.+ +++++++.+|.+.+..|+||| +++.|++++ .+++|.|||+.+++.+
T Consensus 385 ~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~ 463 (543)
T 1nir_A 385 WSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY 463 (543)
T ss_dssp EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCC
T ss_pred EEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCcccCceEEEEECCCCCCCe
Confidence 66665 589999999998 899999999999999999999 667777765 2779999999999887
Q ss_pred EEEE--------cccceEEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCccccccccceeecCCCc
Q 048801 624 RIYE--------IGRFKLVDGKFSPDGTSIVLSD-----DVGQIYLLNTGQGESQKDAKYDQFFLGDYR 679 (1715)
Q Consensus 624 ~tl~--------~h~~~V~svafSPDG~~LAsgs-----~DG~I~IWdl~tGe~~k~~~~~~~fs~D~r 679 (1715)
..+. .+...+..+.|+|||+.|+++. .++.|.|||..++++++..+......|+|.
T Consensus 464 ~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~~~~~p~g~ 532 (543)
T 1nir_A 464 QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTGK 532 (543)
T ss_dssp EEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTTCCSEEEE
T ss_pred EEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCCCccCCCee
Confidence 5552 3456799999999999999763 479999999999998876665444555554
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-24 Score=257.50 Aligned_cols=294 Identities=14% Similarity=0.140 Sum_probs=214.0
Q ss_pred cceeEEEEcCCCCC----eEEEEEcCCCC---EEEEEeCCCcEEEEeCCCC---cEEEEecCCCCCeEEEEECCCCCEEE
Q 048801 232 KMQNIKKLRGHRDA----VYCAIFDRSGR---FVITGSDDRLVKIWSMETA---FCLASCRGHEGDITDLAVSSNNTLVA 301 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~----Vt~VafSpDG~---~LaTGS~DGtIrIWDl~tg---k~l~tL~gHs~~VtsLafSpDg~lLA 301 (1715)
.++.+..|+.-.+. |.++-|-..|- .|++++. ..|++|+..++ +.++++.+|..+|..|+|.||-.-|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 102 (356)
T 2w18_A 24 NLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLV 102 (356)
T ss_dssp CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCE
T ss_pred eeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCccccee
Confidence 35666677655543 45555554443 5777775 69999999999 89999999999999999999865444
Q ss_pred EEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCC----CCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCc
Q 048801 302 SASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPR----PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAI 377 (1715)
Q Consensus 302 SGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPd----g~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i 377 (1715)
+..- |. -+...|.+|+|+|+ +. .+++++.+ +.+|++.
T Consensus 103 ~~~~-----------~~------~~~~~v~sla~spd~~~~~~---~l~s~g~~--~~v~~l~----------------- 143 (356)
T 2w18_A 103 CVAL-----------GN------LEIREIRALFCSSDDESEKQ---VLLKSGNI--KAVLGLT----------------- 143 (356)
T ss_dssp EEEE-----------CS------SSEEEEEEECC------CCE---EEEEEEEE--EEEEEET-----------------
T ss_pred eeee-----------cc------ccccceEEEEECCCcccccc---EEEeCCCe--EEEEecC-----------------
Confidence 3321 11 14567899999999 55 67777743 7778653
Q ss_pred cCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec--CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEE
Q 048801 378 TGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS--SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455 (1715)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs--~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLa 455 (1715)
+|+++.+++ .|+.|++|++... .+.+..+.+|...+..++
T Consensus 144 ------------------------------~g~lv~ss~~g~d~~V~~~~~s~d--------G~~~~s~~~~~~~v~~l~ 185 (356)
T 2w18_A 144 ------------------------------KRRLVSSSGTLSDQQVEVMTFAED--------GGGKENQFLMPPEETILT 185 (356)
T ss_dssp ------------------------------TTEEEEEESSSTTCEEEEEEECTT--------SCEEEEEEECCCSSCEEE
T ss_pred ------------------------------CCcEEEecccCCCCcEEEEEECCC--------CceeeeeccCCCceeeEE
Confidence 344455533 5888888888431 234566778999999999
Q ss_pred Ecc-CcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 456 FSG-CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 456 fsp-dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
|++ ++. +..|++++.|++|+|||+.+++.+..
T Consensus 186 fs~~~g~------------------------~~~LaSgS~D~TIkIWDl~TGk~l~t----------------------- 218 (356)
T 2w18_A 186 FAEVQGM------------------------QEALLGTTIMNNIVIWNLKTGQLLKK----------------------- 218 (356)
T ss_dssp EEEEETS------------------------TTEEEEEETTSEEEEEETTTCCEEEE-----------------------
T ss_pred eeccCCC------------------------CceEEEecCCCcEEEEECCCCcEEEE-----------------------
Confidence 998 221 37999999999999999998664332
Q ss_pred CCCcccccCC---CCCeeEEEeCCCCCEE------------EEEecCCeEEEEECCCCceEEEE-----ecCCCCeEEEE
Q 048801 535 GGPRQRLLPT---PRGVNMIVWSLDNRFV------------LAAIMDCRICVWNAVDGSLVHSL-----TGHSASSYVLD 594 (1715)
Q Consensus 535 g~~~~~l~~h---~~~VtslafSPDG~~L------------aTgs~DGtI~IWDl~sg~~l~tL-----~gH~~~V~sLa 594 (1715)
+.+| ...+.+++|+|+|.++ ++|+.|++|++||..+++.+..+ .+|...+.+..
T Consensus 219 ------L~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~ 292 (356)
T 2w18_A 219 ------MHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGD 292 (356)
T ss_dssp ------EECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEE
T ss_pred ------EcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccc
Confidence 2221 2367888999999886 56788999999999999988776 37776655444
Q ss_pred EccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEE-EEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 595 VHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLV-DGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 595 fSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~-svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
+ ++.++++|+.||+|+|||+.+|+++.++.+|...+. .++|||||++||+|+.|++|+|||+
T Consensus 293 ~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 293 V---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp E---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred c---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 4 367899999999999999999999999998877665 5899999999999999999999985
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.8e-24 Score=292.04 Aligned_cols=350 Identities=12% Similarity=0.047 Sum_probs=268.0
Q ss_pred eEEEEcCCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCcEEEEecCCCCCe-------EEEEECCCCCEEE
Q 048801 235 NIKKLRGHRDAVYCAIFDRSGRFVITGSDD------RLVKIWSMETAFCLASCRGHEGDI-------TDLAVSSNNTLVA 301 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG~~LaTGS~D------GtIrIWDl~tgk~l~tL~gHs~~V-------tsLafSpDg~lLA 301 (1715)
....|.+|...|.+++|||||++||+++.+ ..|++|++.+++ ...+..|...+ .+++|+|||++++
T Consensus 44 ~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~ 122 (1045)
T 1k32_A 44 STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLII 122 (1045)
T ss_dssp CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEE
T ss_pred cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEE
Confidence 356788999999999999999999988643 479999998876 57788899888 9999999999778
Q ss_pred EEeCC------CeeEEEECCCCCce-------------------------------------------------EEEeCC
Q 048801 302 SASND------FVIRVWRLPDGLPI-------------------------------------------------SVLRGH 326 (1715)
Q Consensus 302 SGS~D------GtIrVWDl~tg~~l-------------------------------------------------~~L~gH 326 (1715)
+++.+ ..|.+|++.++... ..+.+|
T Consensus 123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~ 202 (1045)
T 1k32_A 123 STDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM 202 (1045)
T ss_dssp EECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred EECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC
Confidence 87754 35777777554321 223457
Q ss_pred CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC-CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEE
Q 048801 327 TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY-SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAY 405 (1715)
Q Consensus 327 ~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t-g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtslaf 405 (1715)
...+.++.|+++ . ++++++.|+.+.||.+.. +.....+ .. ...+.+++|
T Consensus 203 ~~~v~~~~~s~d-~---l~~~~~~dg~~~l~~~~~~g~~~~~l-------------------------~~-~~~~~~~~~ 252 (1045)
T 1k32_A 203 STHVSSPVIVGH-R---IYFITDIDGFGQIYSTDLDGKDLRKH-------------------------TS-FTDYYPRHL 252 (1045)
T ss_dssp SSCCEEEEEETT-E---EEEEECTTSSCEEEEEETTSCSCEEC-------------------------CC-CCSSCEEEE
T ss_pred CCcccceEEeCC-E---EEEEEeccCceEEEEEeCCCCcceEe-------------------------cC-CCCcceeeE
Confidence 777888888877 3 677778889999997653 2111111 00 113567799
Q ss_pred ccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecC-----------CCCCeeEEEEc-cCcccccccccccccc
Q 048801 406 NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG-----------HENDVNYVQFS-GCAVASRSAMSDAFKE 473 (1715)
Q Consensus 406 SpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g-----------H~~~V~sLafs-pdg~as~~~~~~~~~~ 473 (1715)
+|+|+.|+++ .++.|.+|++.... +..+.+ |...+.+++|+ |++
T Consensus 253 SpDG~~la~~-~~~~i~~~d~~~~~----------l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG------------- 308 (1045)
T 1k32_A 253 NTDGRRILFS-KGGSIYIFNPDTEK----------IEKIEIGDLESPEDRIISIPSKFAEDFSPLDG------------- 308 (1045)
T ss_dssp EESSSCEEEE-ETTEEEEECTTTCC----------EEECCCCCCCBCCSEEEECGGGGEEEEEECGG-------------
T ss_pred cCCCCEEEEE-eCCEEEEecCCceE----------eeeeccCcccccccccccccccceeeecCCCC-------------
Confidence 9999999888 48999999984322 112222 44578999999 987
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC-CeeEEE
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR-GVNMIV 552 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~-~Vtsla 552 (1715)
..|++++ ++.|.+|++.++. ...+..+.. .+..++
T Consensus 309 -------------~~la~~~-~~~i~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~ 344 (1045)
T 1k32_A 309 -------------DLIAFVS-RGQAFIQDVSGTY------------------------------VLKVPEPLRIRYVRRG 344 (1045)
T ss_dssp -------------GCEEEEE-TTEEEEECTTSSB------------------------------EEECSCCSCEEEEEEC
T ss_pred -------------CEEEEEE-cCEEEEEcCCCCc------------------------------eEEccCCCcceEEeee
Confidence 5677776 8899999887532 112334455 789999
Q ss_pred eCCCCCEEEEEecCCeEE-EEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccc
Q 048801 553 WSLDNRFVLAAIMDCRIC-VWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRF 631 (1715)
Q Consensus 553 fSPDG~~LaTgs~DGtI~-IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~ 631 (1715)
|+ ||+.|++++.++.|. +|++.+++.. .+.+|...+..++|+| ++++|++++.++.|++||+.+++....+..|..
T Consensus 345 ~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~ 421 (1045)
T 1k32_A 345 GD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREA 421 (1045)
T ss_dssp SS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSS
T ss_pred Ec-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCC
Confidence 99 999999999888999 9999877654 4448888999999999 778888999999999999999999888877888
Q ss_pred eEEEEEEcCCCCEEEEEeCCC----------eEEEEECCCCccccc-----cccceeecCCCccEEEcCC
Q 048801 632 KLVDGKFSPDGTSIVLSDDVG----------QIYLLNTGQGESQKD-----AKYDQFFLGDYRPLIRDSL 686 (1715)
Q Consensus 632 ~V~svafSPDG~~LAsgs~DG----------~I~IWdl~tGe~~k~-----~~~~~~fs~D~r~L~~d~~ 686 (1715)
.+.+++|||||++||+++.++ .|++||+.+++.... ......|++|++.|++...
T Consensus 422 ~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 422 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEec
Confidence 899999999999999887644 999999998874321 1234579999999887543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.3e-24 Score=279.16 Aligned_cols=345 Identities=11% Similarity=-0.014 Sum_probs=246.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CC-----cEEEEeCCCCcEEEEecCCCCC------------------------eEEEE
Q 048801 243 RDAVYCAIFDRSGRFVITGSD-DR-----LVKIWSMETAFCLASCRGHEGD------------------------ITDLA 292 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~-DG-----tIrIWDl~tgk~l~tL~gHs~~------------------------VtsLa 292 (1715)
...|.+++|+|||++|++++. |+ .|++||+.+++....+..+... |.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456899999999999999998 88 9999999999888777655433 88999
Q ss_pred ECCCCCEEEEEeCCCeeEEEECCCCC--ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecC
Q 048801 293 VSSNNTLVASASNDFVIRVWRLPDGL--PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYL 370 (1715)
Q Consensus 293 fSpDg~lLASGS~DGtIrVWDl~tg~--~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~ 370 (1715)
|||||++|++++. +.|++||+.++. .+..+..|...+.+++|+|+++ +|++++ ++.|++||+.+++.......
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~---~la~~~-~~~i~~~d~~~g~~~~~~~~ 190 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGG---FVSFIR-GRNLWVIDLASGRQMQLTAD 190 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSS---EEEEEE-TTEEEEEETTTTEEEECCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCC---EEEEEe-CCcEEEEecCCCCEEEeccC
Confidence 9999999999987 899999999883 4556777888999999999998 677776 46899999987764322110
Q ss_pred CCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC-------------------------------
Q 048801 371 PKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT------------------------------- 419 (1715)
Q Consensus 371 ~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG------------------------------- 419 (1715)
.......|. ...........+.+++|+|||++|++++.|+
T Consensus 191 -~~~~~~~g~--------~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 191 -GSTTIGNGI--------AEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp -CCSSEEESC--------CCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred -Cccceeccc--------cceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 000000000 0000000011257899999999999987665
Q ss_pred --eEEEEeCCC-CCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEc---
Q 048801 420 --FARVWSACK-SSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS--- 493 (1715)
Q Consensus 420 --~IrVWDl~t-~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS--- 493 (1715)
.|.+||+.+ ++. ..+.....|...+..++| |++ +.|++++
T Consensus 262 ~~~l~~~d~~~~~~~-------~~~~~~~~~~~~~~~~~~-pDg--------------------------~~l~~~~~~~ 307 (741)
T 2ecf_A 262 QVKLGVISPAEQAQT-------QWIDLGKEQDIYLARVNW-RDP--------------------------QHLSFQRQSR 307 (741)
T ss_dssp EEEEEEECSSTTCCC-------EEECCCSCSSEEEEEEEE-EET--------------------------TEEEEEEEET
T ss_pred eeEEEEEECCCCCce-------EEecCCCCcceEEEEEEe-CCC--------------------------CEEEEEEecc
Confidence 788899876 542 111111247778999999 987 5666544
Q ss_pred --CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEE
Q 048801 494 --RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICV 571 (1715)
Q Consensus 494 --~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~I 571 (1715)
.++.|.+||+.+++........ .......+..++|+|||+++++++.+|.+.|
T Consensus 308 ~~~~~~i~~~d~~~g~~~~~~~~~-------------------------~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l 362 (741)
T 2ecf_A 308 DQKKLDLVEVTLASNQQRVLAHET-------------------------SPTWVPLHNSLRFLDDGSILWSSERTGFQHL 362 (741)
T ss_dssp TSSEEEEEEEETTTCCEEEEEEEE-------------------------CSSCCCCCSCCEECTTSCEEEEECTTSSCEE
T ss_pred cCCeEEEEEEECCCCceEEEEEcC-------------------------CCCcCCcCCceEECCCCeEEEEecCCCccEE
Confidence 3678999999875422111000 0000013457899999999999999998888
Q ss_pred EECC-CCceEEEEecCCCCeEEE-EEccCCCcEEEEEeCCC--cEEEEECCC-CceEEEEEcccceEEEEEEcCCCCEEE
Q 048801 572 WNAV-DGSLVHSLTGHSASSYVL-DVHPFNPRIAMSAGYDG--RTIVWDIWE-GTPIRIYEIGRFKLVDGKFSPDGTSIV 646 (1715)
Q Consensus 572 WDl~-sg~~l~tL~gH~~~V~sL-afSP~dg~lLaSgs~DG--tI~VWDl~t-gk~l~tl~~h~~~V~svafSPDG~~LA 646 (1715)
|.+. ++. ...+..|...|..+ .|+|++..++++++.++ .++||++.. +..+..+.. ...+..++|||||++|+
T Consensus 363 ~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~ 440 (741)
T 2ecf_A 363 YRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYV 440 (741)
T ss_dssp EEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEE
T ss_pred EEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEE
Confidence 8765 455 78888888888887 59996656667777776 899999864 666666664 55688999999999998
Q ss_pred EEeCC----CeEEEEECCCC
Q 048801 647 LSDDV----GQIYLLNTGQG 662 (1715)
Q Consensus 647 sgs~D----G~I~IWdl~tG 662 (1715)
+...+ +.+++|+...+
T Consensus 441 ~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 441 DSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EEEEETTEEEEEEEEETTSC
T ss_pred EEecCCCCCCeEEEEEcCCC
Confidence 76443 57899987544
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=258.17 Aligned_cols=242 Identities=10% Similarity=0.061 Sum_probs=192.2
Q ss_pred EECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCC
Q 048801 292 AVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLP 371 (1715)
Q Consensus 292 afSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~ 371 (1715)
.+.+++.+|++|+.||+|+|||+.+++.+..+. ...|.++.|+|. +++++.|++|++|+..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~------~~s~s~D~~i~~w~~~----------- 103 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA------IISRGPCNRLLLLYPG----------- 103 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS------EEEECSTTEEEEEETT-----------
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc------eEEecCCCeEEEEEcc-----------
Confidence 345678899999999999999999999888886 466778888885 7899999999999853
Q ss_pred CCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCe
Q 048801 372 KPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDV 451 (1715)
Q Consensus 372 ~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V 451 (1715)
+.+.+|++.++.. ......+|...|
T Consensus 104 -----------------------------------------------~~~~~~~~~~~~~--------~~~~~~~~~~~v 128 (343)
T 3lrv_A 104 -----------------------------------------------NQITILDSKTNKV--------LREIEVDSANEI 128 (343)
T ss_dssp -----------------------------------------------TEEEEEETTTCCE--------EEEEECCCSSCE
T ss_pred -----------------------------------------------CceEEeecCCcce--------eEEeecCCCCCE
Confidence 1456677765421 112233677899
Q ss_pred eEEEEcc--CcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCC
Q 048801 452 NYVQFSG--CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLP 529 (1715)
Q Consensus 452 ~sLafsp--dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~ 529 (1715)
.+++|+| ++ .+|++++.||+|++||+.+++....
T Consensus 129 ~~~~~~~~~~~--------------------------~~l~s~s~dg~i~~wd~~~~~~~~~------------------ 164 (343)
T 3lrv_A 129 IYMYGHNEVNT--------------------------EYFIWADNRGTIGFQSYEDDSQYIV------------------ 164 (343)
T ss_dssp EEEECCC---C--------------------------CEEEEEETTCCEEEEESSSSCEEEE------------------
T ss_pred EEEEcCCCCCC--------------------------CEEEEEeCCCcEEEEECCCCcEEEE------------------
Confidence 9999999 65 7999999999999999987542110
Q ss_pred CCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceE-EEEec-CCCCeEEEEEccCCCcEEEEEe
Q 048801 530 PQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLV-HSLTG-HSASSYVLDVHPFNPRIAMSAG 607 (1715)
Q Consensus 530 ~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l-~tL~g-H~~~V~sLafSP~dg~lLaSgs 607 (1715)
....+...|++++|+|+|.+|++|+.||.|+|||+.+++.+ ..+.+ |.+.|++++|+| ++.+|++++
T Consensus 165 ----------~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~-~g~~l~s~~ 233 (343)
T 3lrv_A 165 ----------HSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD-NGYWMVVEC 233 (343)
T ss_dssp ----------ECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECT-TSSEEEEEE
T ss_pred ----------EecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeC-CCCEEEEEe
Confidence 01224456999999999999999999999999999999988 88888 999999999999 778888988
Q ss_pred CCCcEEEEECCCCceEEEEEc---ccceE--EEEEEcCCCCEEEEEeC-CCeEEEEECCCCc
Q 048801 608 YDGRTIVWDIWEGTPIRIYEI---GRFKL--VDGKFSPDGTSIVLSDD-VGQIYLLNTGQGE 663 (1715)
Q Consensus 608 ~DGtI~VWDl~tgk~l~tl~~---h~~~V--~svafSPDG~~LAsgs~-DG~I~IWdl~tGe 663 (1715)
|+.|+|||+.+++++..+.. +...+ .+++|+|+|++|++++. |+.|+||++..+.
T Consensus 234 -~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 234 -DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp -SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred -CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 55999999999877655442 22333 36999999999999988 9999999996653
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-22 Score=279.81 Aligned_cols=378 Identities=10% Similarity=-0.004 Sum_probs=273.0
Q ss_pred CCCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCe-------EEEEEcCCCCEEEEEe
Q 048801 190 MQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAV-------YCAIFDRSGRFVITGS 262 (1715)
Q Consensus 190 ~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~V-------t~VafSpDG~~LaTGS 262 (1715)
.+...+..+.|++.|..++........ ........+..... ....|.+|...+ .+++|+|||+++++++
T Consensus 50 ~~~~~v~~~~~SPDG~~la~~s~~~~~---~~~~~i~~~d~~~g-~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~ 125 (1045)
T 1k32_A 50 SNLGVINNARFFPDGRKIAIRVMRGSS---LNTADLYFYNGENG-EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 125 (1045)
T ss_dssp CSSSEEEEEEECTTSSEEEEEEEESTT---CCEEEEEEEETTTT-EEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred eCCCcccCeEECCCCCEEEEEEeeccC---CCCCeEEEEECCCC-CeEEcccCCCcccccccccccccCCCCCEEEEEEC
Confidence 345678888898888766543221000 00001111122222 367889999988 9999999999888887
Q ss_pred CC------CcEEEEeCCCCcEE-------------------------------------------------EEecCCCCC
Q 048801 263 DD------RLVKIWSMETAFCL-------------------------------------------------ASCRGHEGD 287 (1715)
Q Consensus 263 ~D------GtIrIWDl~tgk~l-------------------------------------------------~tL~gHs~~ 287 (1715)
.+ ..|.+|++.++... ..+.+|...
T Consensus 126 ~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~ 205 (1045)
T 1k32_A 126 AMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTH 205 (1045)
T ss_dssp TTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSC
T ss_pred CcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCc
Confidence 54 35777877655422 233567788
Q ss_pred eEEEEECCCCCEEEEEeCCCeeEEEECCC-CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcc
Q 048801 288 ITDLAVSSNNTLVASASNDFVIRVWRLPD-GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSP 366 (1715)
Q Consensus 288 VtsLafSpDg~lLASGS~DGtIrVWDl~t-g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~ 366 (1715)
+.+++|+++ .++++++.|+.+.||.+.. +.....+..|. .+..++|+|++. .|+++ .++.|.+|++.... +.
T Consensus 206 v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~---~la~~-~~~~i~~~d~~~~~-l~ 278 (1045)
T 1k32_A 206 VSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGR---RILFS-KGGSIYIFNPDTEK-IE 278 (1045)
T ss_dssp CEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSS---CEEEE-ETTEEEEECTTTCC-EE
T ss_pred ccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCC---EEEEE-eCCEEEEecCCceE-ee
Confidence 899999988 6777888889999998753 55566676665 467789999997 56665 48999999984332 21
Q ss_pred eecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEc-cCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec
Q 048801 367 RIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYN-ANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS 445 (1715)
Q Consensus 367 ~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafS-pdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~ 445 (1715)
.+.... .........+...+.+++|+ |+|+.|++++ ++.|.+|++.++. ...+.
T Consensus 279 ~l~~~~--------------~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~----------~~~~~ 333 (1045)
T 1k32_A 279 KIEIGD--------------LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY----------VLKVP 333 (1045)
T ss_dssp ECCCCC--------------CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB----------EEECS
T ss_pred eeccCc--------------ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc----------eEEcc
Confidence 211100 00001112244568999999 9999999887 7899999987542 23355
Q ss_pred CCCC-CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEE-EEecCCCccCcccccccccccccC
Q 048801 446 GHEN-DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAI-IWIPRSRRSHGKVGRWTRAYHLKV 523 (1715)
Q Consensus 446 gH~~-~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIr-IWDl~t~~~~~~~~~~~~~~~l~~ 523 (1715)
.|.. .+..++|+ ++ ..|++++.++.+. +|++.++.
T Consensus 334 ~~~~~~~~~~~~s-dg--------------------------~~l~~~s~~~~l~~~~d~~~~~---------------- 370 (1045)
T 1k32_A 334 EPLRIRYVRRGGD-TK--------------------------VAFIHGTREGDFLGIYDYRTGK---------------- 370 (1045)
T ss_dssp CCSCEEEEEECSS-SE--------------------------EEEEEEETTEEEEEEEETTTCC----------------
T ss_pred CCCcceEEeeeEc-CC--------------------------CeEEEEECCCceEEEEECCCCC----------------
Confidence 6766 88899998 76 6788888888888 88887532
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEE
Q 048801 524 PPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIA 603 (1715)
Q Consensus 524 ~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lL 603 (1715)
...+..+...+..++|||||++|++++.++.|++||+.+++....+.+|.+.+.+++|+| ++++|
T Consensus 371 --------------~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~l 435 (1045)
T 1k32_A 371 --------------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFI 435 (1045)
T ss_dssp --------------EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEE
T ss_pred --------------ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC-CCCeE
Confidence 112224566789999999999999999999999999999999888889999999999999 66666
Q ss_pred EEEeCC----------CcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 604 MSAGYD----------GRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 604 aSgs~D----------GtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
++++.+ +.|++||+.+++ +..+..+...+..++|+|||++|++++.++...+|+....
T Consensus 436 a~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 436 AYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp EEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred EEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcc
Confidence 666554 489999999887 6666667778889999999999999999888888876543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=256.90 Aligned_cols=300 Identities=14% Similarity=0.063 Sum_probs=230.7
Q ss_pred CCeEEEEEcCCCC-EEEEEe----CCC----cEEEEeC--CCCcEE--EEecCCCCCeEEEEECC--------------C
Q 048801 244 DAVYCAIFDRSGR-FVITGS----DDR----LVKIWSM--ETAFCL--ASCRGHEGDITDLAVSS--------------N 296 (1715)
Q Consensus 244 ~~Vt~VafSpDG~-~LaTGS----~DG----tIrIWDl--~tgk~l--~tL~gHs~~VtsLafSp--------------D 296 (1715)
..|...+|.+.|. ++++|+ .|| .|+|||+ .+++++ ..+.+|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4566777877774 666876 467 8999999 999887 55889998888888765 2
Q ss_pred CCEEEEEeCC------CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCC---cEEEEecCCCCCcce
Q 048801 297 NTLVASASND------FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG---TCRIWDARYSQYSPR 367 (1715)
Q Consensus 297 g~lLASGS~D------GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DG---tVrIWDl~tg~~l~~ 367 (1715)
+..|+.++.+ +.|++||+. +.....+.+|...|.+++|+|++. +|++++.++ .|++||+.+++....
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~---~la~~s~~~~~~~i~~~d~~tg~~~~l 218 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGS---KLAYVTFESGRSALVIQTLANGAVRQV 218 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSS---EEEEEECTTSSCEEEEEETTTCCEEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCC---EEEEEEecCCCcEEEEEECCCCcEEEe
Confidence 5566666554 799999997 556778888999999999999998 788888775 999999988764321
Q ss_pred ecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEE-EecCCCe--EEEEeCCCCCccCCCCCceeeeee
Q 048801 368 IYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFV-TGSSDTF--ARVWSACKSSVEDSEQPIHELDVL 444 (1715)
Q Consensus 368 i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~La-tGs~DG~--IrVWDl~t~~~~~~~~~~~~l~~l 444 (1715)
. .+...+.+++|+|+|+.|+ +++.++. |++||+.+++ ...+
T Consensus 219 ~--------------------------~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~----------~~~l 262 (415)
T 2hqs_A 219 A--------------------------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----------IRQV 262 (415)
T ss_dssp E--------------------------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC----------EEEC
T ss_pred e--------------------------cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC----------EEeC
Confidence 1 1234589999999999887 6665554 9999997643 3456
Q ss_pred cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC-CC--eEEEEecCCCccCcccccccccccc
Q 048801 445 SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR-DG--SAIIWIPRSRRSHGKVGRWTRAYHL 521 (1715)
Q Consensus 445 ~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~-DG--sIrIWDl~t~~~~~~~~~~~~~~~l 521 (1715)
..|...+.+++|+|++ ..|++++. +| .|.+||+.++.
T Consensus 263 ~~~~~~~~~~~~spdg--------------------------~~l~~~s~~~g~~~i~~~d~~~~~-------------- 302 (415)
T 2hqs_A 263 TDGRSNNTEPTWFPDS--------------------------QNLAFTSDQAGRPQVYKVNINGGA-------------- 302 (415)
T ss_dssp CCCSSCEEEEEECTTS--------------------------SEEEEEECTTSSCEEEEEETTSSC--------------
T ss_pred cCCCCcccceEECCCC--------------------------CEEEEEECCCCCcEEEEEECCCCC--------------
Confidence 7788899999999987 56776665 55 57777876532
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC---CeEEEEECCCCceEEEEecCCCCeEEEEEccC
Q 048801 522 KVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAVDGSLVHSLTGHSASSYVLDVHPF 598 (1715)
Q Consensus 522 ~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D---GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~ 598 (1715)
...+..+...+.+++|+|||++|++++.+ ..|++||+.+++. ..+..|. .+.+++|+|
T Consensus 303 ----------------~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~sp- 363 (415)
T 2hqs_A 303 ----------------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAP- 363 (415)
T ss_dssp ----------------CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECT-
T ss_pred ----------------EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcC-
Confidence 11223345578899999999999988864 5899999998877 4566664 899999999
Q ss_pred CCcEEEEEeCCC---cEEEEECCCCceEEEEEcccceEEEEEEcCCCC
Q 048801 599 NPRIAMSAGYDG---RTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGT 643 (1715)
Q Consensus 599 dg~lLaSgs~DG---tI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~ 643 (1715)
++++|++++.++ .|++||+. +..+..+..+.+.|.+++|+|.-.
T Consensus 364 dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 364 NGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred CCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 666666666666 79999985 667778888889999999999643
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.4e-22 Score=252.41 Aligned_cols=317 Identities=9% Similarity=0.012 Sum_probs=240.7
Q ss_pred cccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC--CCCcEEEEecCCCCCeEEEEECC----CCCEEE
Q 048801 228 TMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSM--ETAFCLASCRGHEGDITDLAVSS----NNTLVA 301 (1715)
Q Consensus 228 ~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl--~tgk~l~tL~gHs~~VtsLafSp----Dg~lLA 301 (1715)
+...+.+++.++..+.. +.+++|+|||++|++++.|+.|.+||+ .+++++.++. +...+..++|+| ||++|+
T Consensus 164 ~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~ 241 (543)
T 1nir_A 164 VDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTI 241 (543)
T ss_dssp EETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEE
T ss_pred EECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEE
Confidence 44566788888884333 999999999999999999999999999 8999999988 455689999999 999999
Q ss_pred EEeC-CCeeEEEECCCCCceEEEeCC----------CC-CeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceec
Q 048801 302 SASN-DFVIRVWRLPDGLPISVLRGH----------TG-AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIY 369 (1715)
Q Consensus 302 SGS~-DGtIrVWDl~tg~~l~~L~gH----------~~-~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~ 369 (1715)
+++. +++|.|||..+++++.++..+ .. .+.++.++|++.. ++++...++.|.+||+.+.+.+....
T Consensus 242 v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~--~~vs~~~~g~i~vvd~~~~~~l~~~~ 319 (543)
T 1nir_A 242 AGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE--FIVNVKETGKVLLVNYKDIDNLTVTS 319 (543)
T ss_dssp EEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE--EEEEETTTTEEEEEECTTSSSCEEEE
T ss_pred EEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE--EEEEECCCCeEEEEEecCCCcceeEE
Confidence 9884 899999999999999888652 23 7899999998773 67888999999999998765433111
Q ss_pred CCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEe-cCCCeEEEEeCCCCCccCCCCCceeeeeecC--
Q 048801 370 LPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG-SSDTFARVWSACKSSVEDSEQPIHELDVLSG-- 446 (1715)
Q Consensus 370 ~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatG-s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g-- 446 (1715)
. .+...+.+++|+|+|++|+++ ..++.|.+||+.++++ +..+..
T Consensus 320 i------------------------~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l---------~~~i~~g~ 366 (543)
T 1nir_A 320 I------------------------GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL---------SALVDVGK 366 (543)
T ss_dssp E------------------------ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE---------EEEEECSS
T ss_pred e------------------------ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE---------EEeeccCC
Confidence 1 012346789999999976654 5688999999987643 333332
Q ss_pred --CCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEc-CCCeEEEEecCCCccCcccccccccccccC
Q 048801 447 --HENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523 (1715)
Q Consensus 447 --H~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~ 523 (1715)
|.+....+ ++|++ +..++++. .|++|.+||+.+....
T Consensus 367 ~ph~g~g~~~-~~p~~-------------------------g~~~~s~~~~d~~V~v~d~~~~~~~-------------- 406 (543)
T 1nir_A 367 TPHPGRGANF-VHPKY-------------------------GPVWSTSHLGDGSISLIGTDPKNHP-------------- 406 (543)
T ss_dssp SBCCTTCEEE-EETTT-------------------------EEEEEEEBSSSSEEEEEECCTTTCT--------------
T ss_pred CCCCCCCccc-CCCCC-------------------------ccEEEeccCCCceEEEEEeCCCCCc--------------
Confidence 54433333 45553 25677776 6899999999862100
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe-------cCCeEEEEECCCCceE-EEE--------ecCC
Q 048801 524 PPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-------MDCRICVWNAVDGSLV-HSL--------TGHS 587 (1715)
Q Consensus 524 ~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs-------~DGtI~IWDl~sg~~l-~tL--------~gH~ 587 (1715)
......+..+..+...+..++++|+|++|++++ .+++|.|||+.+++.. ..+ ..+.
T Consensus 407 --------~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~ 478 (543)
T 1nir_A 407 --------QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA 478 (543)
T ss_dssp --------TTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC
T ss_pred --------hhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCC
Confidence 001233455666777888899999999999987 3679999999999887 454 3567
Q ss_pred CCeEEEEEccCCCcEEEEEe----CCCcEEEEECCCCceEEEEEcc
Q 048801 588 ASSYVLDVHPFNPRIAMSAG----YDGRTIVWDIWEGTPIRIYEIG 629 (1715)
Q Consensus 588 ~~V~sLafSP~dg~lLaSgs----~DGtI~VWDl~tgk~l~tl~~h 629 (1715)
..+..++|+|++..++++.. .|+.|.|||..+++++.++...
T Consensus 479 ~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 479 KRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp CEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred CceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 78999999995555555432 4799999999999999998743
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-22 Score=263.04 Aligned_cols=361 Identities=11% Similarity=0.054 Sum_probs=239.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCC---CeEEEEECCCCCEEEEEeCC---------CeeEEE
Q 048801 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEG---DITDLAVSSNNTLVASASND---------FVIRVW 312 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~---~VtsLafSpDg~lLASGS~D---------GtIrVW 312 (1715)
.+.+++|+|||+++++ +.||.|++||+.+++....+.+|.. .|.+++|||||++||+++.+ +.|.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 3667889999998877 7899999999999998888887765 49999999999999999875 788899
Q ss_pred ECCCCCceEEEe---CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCC
Q 048801 313 RLPDGLPISVLR---GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 313 Dl~tg~~l~~L~---gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
|+.+++. ..+. +|...+.+++|+|+++ .|++++. +.|++||+.+++...............|....
T Consensus 97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~---~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~------ 165 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ---QLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDW------ 165 (723)
T ss_dssp ESSSCCC-EECCCTTCCSCCCSBCCBCSSTT---CEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCH------
T ss_pred ECCCCce-EeccCCccccccccccEECCCCC---EEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccce------
Confidence 9999876 3443 3445589999999998 6777665 78999999887654332110000000000000
Q ss_pred CCCCCCCCcceeEEEEccCCCeEEEecCC-CeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccc
Q 048801 390 SSSNGLQSHQILCCAYNANGTVFVTGSSD-TFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpdG~~LatGs~D-G~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~ 468 (1715)
.....-...+.+++|+|||+.|++++.+ +.+.+|++.... ..+...+..+.|.+++
T Consensus 166 -v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~G-------- 222 (723)
T 1xfd_A 166 -LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT--------------GSIYPTVKPYHYPKAG-------- 222 (723)
T ss_dssp -HHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS--------------SSSSCCCEEEECCBTT--------
T ss_pred -eEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccC--------------CcCCCcceeccCCCCC--------
Confidence 0000001134789999999999988754 467778764321 0122346777777654
Q ss_pred ccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCe
Q 048801 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548 (1715)
Q Consensus 469 ~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V 548 (1715)
.. ..+..|.+||+.+++....+ . . ......+...+
T Consensus 223 ------------------~~----~~~~~l~~~d~~~~~~~~~l---------~------------~--~~~~~~~~~~~ 257 (723)
T 1xfd_A 223 ------------------SE----NPSISLHVIGLNGPTHDLEM---------M------------P--PDDPRMREYYI 257 (723)
T ss_dssp ------------------SC----CCEEEEEEEESSSSCCCEEC---------C------------C--CCCGGGSSEEE
T ss_pred ------------------CC----CCeeEEEEEECCCCceeEEe---------e------------C--CccCCCcccee
Confidence 11 23458999999875421110 0 0 00112235578
Q ss_pred eEEEeCCCCCEEEEEec----CCeEEEEECCCCceEEEEec-CCCCeE----EEEEccCCCcEEEE-EeCCC------cE
Q 048801 549 NMIVWSLDNRFVLAAIM----DCRICVWNAVDGSLVHSLTG-HSASSY----VLDVHPFNPRIAMS-AGYDG------RT 612 (1715)
Q Consensus 549 tslafSPDG~~LaTgs~----DGtI~IWDl~sg~~l~tL~g-H~~~V~----sLafSP~dg~lLaS-gs~DG------tI 612 (1715)
..++|||||++|++.+. +..|++||+.++++...+.. +...+. .++|+|++..+++. +..+| .|
T Consensus 258 ~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l 337 (723)
T 1xfd_A 258 TMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHI 337 (723)
T ss_dssp EEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEE
T ss_pred EEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEE
Confidence 99999999999977654 35799999999988777654 334443 78999966556654 56777 57
Q ss_pred EEEE-CCCCc--eEEEEEcccceEEE-EEEcCCCCEEEEEeCC---CeEEEEECCCCc---cc--c------ccccceee
Q 048801 613 IVWD-IWEGT--PIRIYEIGRFKLVD-GKFSPDGTSIVLSDDV---GQIYLLNTGQGE---SQ--K------DAKYDQFF 674 (1715)
Q Consensus 613 ~VWD-l~tgk--~l~tl~~h~~~V~s-vafSPDG~~LAsgs~D---G~I~IWdl~tGe---~~--k------~~~~~~~f 674 (1715)
.+|| ...+. ++..+..+...+.. ++|||||+.|++++.+ +.+.||++..+. .. . .......|
T Consensus 338 ~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 417 (723)
T 1xfd_A 338 TVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASF 417 (723)
T ss_dssp EEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEE
T ss_pred EEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEE
Confidence 7777 34444 14445444445554 6999999999876554 789999876421 11 1 11234678
Q ss_pred cCCCccEEEcC
Q 048801 675 LGDYRPLIRDS 685 (1715)
Q Consensus 675 s~D~r~L~~d~ 685 (1715)
++|++.|++..
T Consensus 418 spdg~~l~~~~ 428 (723)
T 1xfd_A 418 SHSMDFFLLKC 428 (723)
T ss_dssp CTTSSEEEEEC
T ss_pred CCCCCEEEEEc
Confidence 89988887643
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.9e-22 Score=259.07 Aligned_cols=337 Identities=11% Similarity=0.040 Sum_probs=230.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEE-EEecCCC-----------------CCeEEEEECCCCCEEEEEeCCC
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCL-ASCRGHE-----------------GDITDLAVSSNNTLVASASNDF 307 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l-~tL~gHs-----------------~~VtsLafSpDg~lLASGS~DG 307 (1715)
+..+.|+ |..+++++.|+ | +||+.+++.+ ..+..|. ..|.+++|||| ..|+.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 4446677 66777777888 8 9999999874 4444333 56999999999 5655553 59
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC-----CCCcceecCCCCCCCccCccC
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY-----SQYSPRIYLPKPPDAITGKSN 382 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t-----g~~l~~i~~~~~~~~i~g~~~ 382 (1715)
.|++||+.+++... +..+...+.+++|+|+++ .|+++ .++.|++||+.+ ++........ ......|.
T Consensus 102 ~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~---~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~-~~~~~~g~-- 173 (706)
T 2z3z_A 102 GLVGFDMLARKVTY-LFDTNEETASLDFSPVGD---RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDG-TETLVYGQ-- 173 (706)
T ss_dssp EEEEEETTTTEEEE-EECCTTCCTTCEECTTSS---EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCC-BTTEEESS--
T ss_pred EEEEEECCCCceEE-ccCCcccccCCcCCCCCC---EEEEE-ECCeEEEEecCcccccCCCcEEeccCC-CCCeEccc--
Confidence 99999998886544 455777899999999998 66764 679999999987 6543221110 00000000
Q ss_pred CCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec---------------------------------CCCeEEEEeCCCC
Q 048801 383 VPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS---------------------------------SDTFARVWSACKS 429 (1715)
Q Consensus 383 ~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs---------------------------------~DG~IrVWDl~t~ 429 (1715)
. ....+...+.+++|+|||++|++++ .+..|++||+.++
T Consensus 174 -------~-~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~ 245 (706)
T 2z3z_A 174 -------A-VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG 245 (706)
T ss_dssp -------C-CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT
T ss_pred -------c-hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC
Confidence 0 0111123468899999999999887 4578999999875
Q ss_pred CccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC-----eEEEEecC
Q 048801 430 SVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG-----SAIIWIPR 504 (1715)
Q Consensus 430 ~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG-----sIrIWDl~ 504 (1715)
+. ..+.....|...+.+++|+|++ +.|++++.++ .|.+||+.
T Consensus 246 ~~-------~~~~~~~~~~~~~~~~~~spdg--------------------------~~l~~~~~~~~~~~~~v~~~d~~ 292 (706)
T 2z3z_A 246 KT-------VYLQTGEPKEKFLTNLSWSPDE--------------------------NILYVAEVNRAQNECKVNAYDAE 292 (706)
T ss_dssp EE-------EECCCCSCTTCEEEEEEECTTS--------------------------SEEEEEEECTTSCEEEEEEEETT
T ss_pred ce-------EeeccCCCCceeEeeEEEECCC--------------------------CEEEEEEeCCCCCeeEEEEEECC
Confidence 32 1111223567789999999987 6777777665 89999998
Q ss_pred CCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC--CCCEEEEEecCCeEEEEECC-CCceEE
Q 048801 505 SRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL--DNRFVLAAIMDCRICVWNAV-DGSLVH 581 (1715)
Q Consensus 505 t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP--DG~~LaTgs~DGtI~IWDl~-sg~~l~ 581 (1715)
+++....+.. . ........+..++|+| ||++|+++..|+.++||.+. ++..+.
T Consensus 293 ~g~~~~~~~~---~---------------------~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~ 348 (706)
T 2z3z_A 293 TGRFVRTLFV---E---------------------TDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIR 348 (706)
T ss_dssp TCCEEEEEEE---E---------------------ECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEE
T ss_pred CCceeeEEEE---c---------------------cCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEE
Confidence 7521111000 0 0000011246689999 99999999999999999876 677888
Q ss_pred EEecCCCCeEE-EEEccCCCcEEEEEeCCC----cEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCC----C
Q 048801 582 SLTGHSASSYV-LDVHPFNPRIAMSAGYDG----RTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDV----G 652 (1715)
Q Consensus 582 tL~gH~~~V~s-LafSP~dg~lLaSgs~DG----tI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~D----G 652 (1715)
.+..|...+.. ++|+|++..+++++..++ .|..||+.+++ +..+. +...+.+++|||||++|+++..+ +
T Consensus 349 ~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~ 426 (706)
T 2z3z_A 349 QVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPR 426 (706)
T ss_dssp ECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSC
T ss_pred ecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCc
Confidence 88888888877 799996556666666665 67778887776 33343 56678899999999999876443 5
Q ss_pred eEEEEECCCCc
Q 048801 653 QIYLLNTGQGE 663 (1715)
Q Consensus 653 ~I~IWdl~tGe 663 (1715)
.|++|++.+++
T Consensus 427 ~i~l~d~~~~~ 437 (706)
T 2z3z_A 427 KVTVTNIGKGS 437 (706)
T ss_dssp EEEEEESSSCE
T ss_pred EEEEEECCCCe
Confidence 69999998876
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.89 E-value=9.2e-22 Score=233.66 Aligned_cols=269 Identities=11% Similarity=0.027 Sum_probs=182.3
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCC----CCEEEEEeCCC
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN----NTLVASASNDF 307 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpD----g~lLASGS~DG 307 (1715)
+.++++++.+|..+|..|+|.||-.-|+...- | .-+...|..|+|+|| ++++++++.+
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------~------~~~~~~v~sla~spd~~~~~~~l~s~g~~- 136 (356)
T 2w18_A 75 QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL-----------G------NLEIREIRALFCSSDDESEKQVLLKSGNI- 136 (356)
T ss_dssp BEEEEEEEECCSSCEEEECCCTTCCSCEEEEE-----------C------SSSEEEEEEECC------CCEEEEEEEEE-
T ss_pred cceeeEEEeccCceeEEEEEcCcccceeeeee-----------c------cccccceEEEEECCCccccccEEEeCCCe-
Confidence 34899999999999999999997643332211 1 124567999999999 9999998854
Q ss_pred eeEEEECCCCCceEE-EeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 308 VIRVWRLPDGLPISV-LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~-L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
+.||++.+++.+.. ..+|...|..++|+|++. .+.+.
T Consensus 137 -~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~---~~~s~-------------------------------------- 174 (356)
T 2w18_A 137 -KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGG---GKENQ-------------------------------------- 174 (356)
T ss_dssp -EEEEEETTTEEEEEESSSTTCEEEEEEECTTSC---EEEEE--------------------------------------
T ss_pred -EEEEecCCCcEEEecccCCCCcEEEEEECCCCc---eeeee--------------------------------------
Confidence 88898877666665 356666677666666654 22211
Q ss_pred CCCCCCCCCCCcceeEEEEcc---CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCC---CCeeEEEEccCc
Q 048801 387 NGPSSSNGLQSHQILCCAYNA---NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE---NDVNYVQFSGCA 460 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSp---dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~---~~V~sLafspdg 460 (1715)
..|...+..++|++ ++.+||+|+.|++|+|||+.+++ ++..+.+|. ..+.+++|+|++
T Consensus 175 -------~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk---------~l~tL~g~~~~v~~v~~vafSpdG 238 (356)
T 2w18_A 175 -------FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ---------LLKKMHIDDSYQASVCHKAYSEMG 238 (356)
T ss_dssp -------EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC---------EEEEEECCC---CCCEEEEEEETT
T ss_pred -------ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc---------EEEEEcCCCcceeeeEEEEECCCC
Confidence 12345578888888 77999999999999999998864 456666543 467788999987
Q ss_pred ccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
........ .. ....+++|+.|++|++||+.+++..... .+..
T Consensus 239 ~~lvs~s~----~~----------~~w~laSGs~D~tIklWd~~tgk~l~v~-------~~~~----------------- 280 (356)
T 2w18_A 239 LLFIVLSH----PC----------AKESESLRSPVFQLIVINPKTTLSVGVM-------LYCL----------------- 280 (356)
T ss_dssp EEEEEEC--------------------------CCEEEEEEETTTTEEEEEE-------EECC-----------------
T ss_pred CEEEEecc----CC----------CcceeeccCCCcEEEEEECCCCEEEEEE-------Eeec-----------------
Confidence 21100000 00 0024688999999999999876533210 0000
Q ss_pred ccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeE-EEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 541 LLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSY-VLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 541 l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~-sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
..+|...+.+..+ ++.++++|+.|++|+|||+.+++++.+|.+|...+. +++|+| ++.+|++|+.|++|+|||+
T Consensus 281 p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 281 PPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred cCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC-CCCEEEEEECCCcEEEecC
Confidence 0122223333333 488999999999999999999999999999987665 589999 7889999999999999995
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-21 Score=236.29 Aligned_cols=269 Identities=10% Similarity=0.004 Sum_probs=209.0
Q ss_pred ccceeE--EEEcCCCCCeEEEEEcC--------------CCCEEEEEeCC------CcEEEEeCCCCcEEEEecCCCCCe
Q 048801 231 QKMQNI--KKLRGHRDAVYCAIFDR--------------SGRFVITGSDD------RLVKIWSMETAFCLASCRGHEGDI 288 (1715)
Q Consensus 231 ~~~k~l--~~L~GH~~~Vt~VafSp--------------DG~~LaTGS~D------GtIrIWDl~tgk~l~tL~gHs~~V 288 (1715)
.+.+++ ..+.+|...|.++++++ .+..|+.++.+ +.|++||+. +.....+.+|...|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v 181 (415)
T 2hqs_A 103 APGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPL 181 (415)
T ss_dssp STTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCE
T ss_pred CCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcc
Confidence 445555 56899999998888875 25566666554 799999997 45567888899999
Q ss_pred EEEEECCCCCEEEEEeCCC---eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEE-EecCCCc--EEEEecCCC
Q 048801 289 TDLAVSSNNTLVASASNDF---VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLL-SSSDDGT--CRIWDARYS 362 (1715)
Q Consensus 289 tsLafSpDg~lLASGS~DG---tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~La-SgS~DGt--VrIWDl~tg 362 (1715)
.+++|+|||++||+++.++ .|++||+.+++.. .+..|...+.+++|+|++. .|+ +++.++. |++||+.++
T Consensus 182 ~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~---~la~~~~~~g~~~i~~~d~~~~ 257 (415)
T 2hqs_A 182 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGS---KLAFALSKTGSLNLYVMDLASG 257 (415)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSS---EEEEEECTTSSCEEEEEETTTC
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCC---EEEEEEecCCCceEEEEECCCC
Confidence 9999999999999999885 9999999998765 5677889999999999998 555 6666655 999999876
Q ss_pred CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-CC--eEEEEeCCCCCccCCCCCce
Q 048801 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-DT--FARVWSACKSSVEDSEQPIH 439 (1715)
Q Consensus 363 ~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-DG--~IrVWDl~t~~~~~~~~~~~ 439 (1715)
+.. .+ ..+...+.+++|+|+|++|++++. ++ .|.+||+.++.
T Consensus 258 ~~~-~l-------------------------~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~--------- 302 (415)
T 2hqs_A 258 QIR-QV-------------------------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--------- 302 (415)
T ss_dssp CEE-EC-------------------------CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---------
T ss_pred CEE-eC-------------------------cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC---------
Confidence 531 11 123456899999999998888876 45 67777887643
Q ss_pred eeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC---CeEEEEecCCCccCccccccc
Q 048801 440 ELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD---GSAIIWIPRSRRSHGKVGRWT 516 (1715)
Q Consensus 440 ~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D---GsIrIWDl~t~~~~~~~~~~~ 516 (1715)
...+..+...+.+++|+|++ +.|++++.+ +.|.+||+.+++.
T Consensus 303 -~~~l~~~~~~~~~~~~spdG--------------------------~~l~~~~~~~g~~~i~~~d~~~~~~-------- 347 (415)
T 2hqs_A 303 -PQRITWEGSQNQDADVSSDG--------------------------KFMVMVSSNGGQQHIAKQDLATGGV-------- 347 (415)
T ss_dssp -CEECCCSSSEEEEEEECTTS--------------------------SEEEEEEECSSCEEEEEEETTTCCE--------
T ss_pred -EEEEecCCCcccCeEECCCC--------------------------CEEEEEECcCCceEEEEEECCCCCE--------
Confidence 23345566788999999987 677776654 5899999986431
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC---eEEEEECCCCceEEEEecCCCCeEEE
Q 048801 517 RAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAVDGSLVHSLTGHSASSYVL 593 (1715)
Q Consensus 517 ~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG---tI~IWDl~sg~~l~tL~gH~~~V~sL 593 (1715)
..+..+. .+.+++|+|||++|++++.++ .|++||+. +..+..+.+|.+.|.++
T Consensus 348 ----------------------~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~ 403 (415)
T 2hqs_A 348 ----------------------QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFP 403 (415)
T ss_dssp ----------------------EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEE
T ss_pred ----------------------EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCC
Confidence 1122232 688999999999999988877 79999986 66788899999999999
Q ss_pred EEccC
Q 048801 594 DVHPF 598 (1715)
Q Consensus 594 afSP~ 598 (1715)
+|+|.
T Consensus 404 ~~~~~ 408 (415)
T 2hqs_A 404 AWSPY 408 (415)
T ss_dssp EECCC
T ss_pred ccccc
Confidence 99993
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-20 Score=247.86 Aligned_cols=304 Identities=9% Similarity=0.030 Sum_probs=222.0
Q ss_pred CCCeEEEEECCCCCEEEEEeC-CC-----eeEEEECCCCCceEEEeCCCCC------------------------eEEEE
Q 048801 285 EGDITDLAVSSNNTLVASASN-DF-----VIRVWRLPDGLPISVLRGHTGA------------------------VTAIA 334 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~-DG-----tIrVWDl~tg~~l~~L~gH~~~------------------------VtsLa 334 (1715)
...|.+++|||||++|++++. |+ .|++||+.+++....+..+... |.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999998 88 9999999999887777655433 88999
Q ss_pred ecCCCCcceEEEEecCCCcEEEEecCCC---CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCe
Q 048801 335 FSPRPSAIYQLLSSSDDGTCRIWDARYS---QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTV 411 (1715)
Q Consensus 335 fSPdg~~~~~LaSgS~DGtVrIWDl~tg---~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~ 411 (1715)
|+|+++ +|++++. +.|.+||+.++ ... .+ ..+...+.+++|+|||++
T Consensus 116 ~SpDg~---~l~~~~~-~~i~~~d~~~~~~~~~~-~l-------------------------~~~~~~~~~~~~SPDG~~ 165 (741)
T 2ecf_A 116 WSPDAQ---RLLFPLG-GELYLYDLKQEGKAAVR-QL-------------------------THGEGFATDAKLSPKGGF 165 (741)
T ss_dssp ECTTSS---EEEEEET-TEEEEEESSSCSTTSCC-BC-------------------------CCSSSCEEEEEECTTSSE
T ss_pred ECCCCC---EEEEEeC-CcEEEEECCCCCcceEE-Ec-------------------------ccCCcccccccCCCCCCE
Confidence 999998 7777775 99999999876 321 11 122456899999999999
Q ss_pred EEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC----------------CeeEEEEccCcccccccccccccccc
Q 048801 412 FVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN----------------DVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 412 LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~----------------~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
|++++ ++.|++||+.++.. ......+.. .+.+++|+|++
T Consensus 166 la~~~-~~~i~~~d~~~g~~---------~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg--------------- 220 (741)
T 2ecf_A 166 VSFIR-GRNLWVIDLASGRQ---------MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD--------------- 220 (741)
T ss_dssp EEEEE-TTEEEEEETTTTEE---------EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS---------------
T ss_pred EEEEe-CCcEEEEecCCCCE---------EEeccCCccceeccccceeeeeccccccceEECCCC---------------
Confidence 99887 56999999987532 122222222 24779999987
Q ss_pred cccccCCcccCceEEEEcCCC---------------------------------eEEEEecCC-CccCcccccccccccc
Q 048801 476 VPKFKNSWFCHDNIVTCSRDG---------------------------------SAIIWIPRS-RRSHGKVGRWTRAYHL 521 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS~DG---------------------------------sIrIWDl~t-~~~~~~~~~~~~~~~l 521 (1715)
+.|++++.|+ .|.+||+.+ ++....
T Consensus 221 -----------~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~---------- 279 (741)
T 2ecf_A 221 -----------SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWI---------- 279 (741)
T ss_dssp -----------SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEE----------
T ss_pred -----------CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEe----------
Confidence 5666665544 677777765 331100
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec-----CCeEEEEECCCCceEEEEecCCC----CeEE
Q 048801 522 KVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM-----DCRICVWNAVDGSLVHSLTGHSA----SSYV 592 (1715)
Q Consensus 522 ~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~-----DGtI~IWDl~sg~~l~tL~gH~~----~V~s 592 (1715)
.....+...+..++| |||++|++++. +..|++||+.+++....+..+.. .+.+
T Consensus 280 -----------------~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 341 (741)
T 2ecf_A 280 -----------------DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNS 341 (741)
T ss_dssp -----------------CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSC
T ss_pred -----------------cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCc
Confidence 000135567899999 99999998764 56899999999998887776654 4568
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECC-CCceEEEEEcccceEEEE-EEcCCCCEEEEE-eCCC--eEEEEECCC-Ccccc
Q 048801 593 LDVHPFNPRIAMSAGYDGRTIVWDIW-EGTPIRIYEIGRFKLVDG-KFSPDGTSIVLS-DDVG--QIYLLNTGQ-GESQK 666 (1715)
Q Consensus 593 LafSP~dg~lLaSgs~DGtI~VWDl~-tgk~l~tl~~h~~~V~sv-afSPDG~~LAsg-s~DG--~I~IWdl~t-Ge~~k 666 (1715)
++|+| +++++++++.||.+.||.+. ++. +..+..+...|..+ .|+|||+.|+++ +.++ .++||++.. |....
T Consensus 342 ~~~sp-dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~ 419 (741)
T 2ecf_A 342 LRFLD-DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQ 419 (741)
T ss_dssp CEECT-TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCE
T ss_pred eEECC-CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCee
Confidence 99999 55688899999988888765 455 77777777778887 599999988654 4454 888988753 43222
Q ss_pred -----ccccceeecCCCccEEEc
Q 048801 667 -----DAKYDQFFLGDYRPLIRD 684 (1715)
Q Consensus 667 -----~~~~~~~fs~D~r~L~~d 684 (1715)
.......|++|++.|++.
T Consensus 420 ~l~~~~~~~~~~~spdg~~l~~~ 442 (741)
T 2ecf_A 420 RLSKAPGMHSASFARNASVYVDS 442 (741)
T ss_dssp ECCCSCSEEEEEECTTSSEEEEE
T ss_pred ecccCCCceEEEECCCCCEEEEE
Confidence 112356799999988765
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.86 E-value=9e-20 Score=215.07 Aligned_cols=285 Identities=14% Similarity=0.120 Sum_probs=202.0
Q ss_pred EEcCCCCE-EEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC-CCeeEEEECCCCCc-eEEEeCC
Q 048801 250 IFDRSGRF-VITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN-DFVIRVWRLPDGLP-ISVLRGH 326 (1715)
Q Consensus 250 afSpDG~~-LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~-DGtIrVWDl~tg~~-l~~L~gH 326 (1715)
.|.+++.+ +++++.++.|.+||+.+++.+..+..+...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+..+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 46665555 6777789999999999999988888777777 9999999997776665 89999999999988 7777777
Q ss_pred CCCeEEEEecCCCCcceEEEEecCCC---cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEE
Q 048801 327 TGAVTAIAFSPRPSAIYQLLSSSDDG---TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCC 403 (1715)
Q Consensus 327 ~~~VtsLafSPdg~~~~~LaSgS~DG---tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsl 403 (1715)
...+.+++|+|++. +|+++..++ .|.+||+.+++.+..+.. .....++
T Consensus 83 ~~~~~~~~~s~dg~---~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~--------------------------~~~~~~~ 133 (331)
T 3u4y_A 83 QSSMADVDITPDDQ---FAVTVTGLNHPFNMQSYSFLKNKFISTIPI--------------------------PYDAVGI 133 (331)
T ss_dssp SSCCCCEEECTTSS---EEEECCCSSSSCEEEEEETTTTEEEEEEEC--------------------------CTTEEEE
T ss_pred CCCccceEECCCCC---EEEEecCCCCcccEEEEECCCCCeEEEEEC--------------------------CCCccce
Confidence 77666699999998 666555553 899999988876544321 2235799
Q ss_pred EEccCCCeEEE-ecCCCe-EEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccC
Q 048801 404 AYNANGTVFVT-GSSDTF-ARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 404 afSpdG~~Lat-Gs~DG~-IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
+|+|+|++|++ +..++. |.+|++...... .............+..++|+|++
T Consensus 134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~spdg--------------------- 187 (331)
T 3u4y_A 134 AISPNGNGLILIDRSSANTVRRFKIDADGVL-----FDTGQEFISGGTRPFNITFTPDG--------------------- 187 (331)
T ss_dssp EECTTSSCEEEEEETTTTEEEEEEECTTCCE-----EEEEEEEECSSSSEEEEEECTTS---------------------
T ss_pred EECCCCCEEEEEecCCCceEEEEEECCCCcE-----eecCCccccCCCCccceEECCCC---------------------
Confidence 99999985554 455578 999998743210 00001112334467899999987
Q ss_pred CcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La 561 (1715)
...++++..++.|.+||+.+++.... +..+ .....+..++|+|||++|+
T Consensus 188 ----~~l~v~~~~~~~v~v~d~~~~~~~~~--------------------------~~~~-~~~~~~~~~~~spdg~~l~ 236 (331)
T 3u4y_A 188 ----NFAFVANLIGNSIGILETQNPENITL--------------------------LNAV-GTNNLPGTIVVSRDGSTVY 236 (331)
T ss_dssp ----SEEEEEETTTTEEEEEECSSTTSCEE--------------------------EEEE-ECSSCCCCEEECTTSSEEE
T ss_pred ----CEEEEEeCCCCeEEEEECCCCcccce--------------------------eeec-cCCCCCceEEECCCCCEEE
Confidence 23566677899999999987543100 0111 1224567899999999877
Q ss_pred EEe-cCCeEEEEECCCCce--EEEEecC----CCC---eEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 562 AAI-MDCRICVWNAVDGSL--VHSLTGH----SAS---SYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 562 Tgs-~DGtI~IWDl~sg~~--l~tL~gH----~~~---V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
++. .++.|.+||+.+++. +..+..+ ... +..++|+|++..+++++..++.|.|||+....
T Consensus 237 v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 237 VLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred EEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 665 477899999999887 4444432 222 24589999555555666677899999996543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-19 Score=210.64 Aligned_cols=304 Identities=11% Similarity=0.106 Sum_probs=197.7
Q ss_pred EEEEEeCCCcEEEEeCC-CC--cEEEEecCCCCCeEEEEECCCCCEEEEEeCC-CeeEEEECC--CCC--ceEEEeCCCC
Q 048801 257 FVITGSDDRLVKIWSME-TA--FCLASCRGHEGDITDLAVSSNNTLVASASND-FVIRVWRLP--DGL--PISVLRGHTG 328 (1715)
Q Consensus 257 ~LaTGS~DGtIrIWDl~-tg--k~l~tL~gHs~~VtsLafSpDg~lLASGS~D-GtIrVWDl~--tg~--~l~~L~gH~~ 328 (1715)
++++++.|+.|++|++. ++ +.+..+ .|...+.+++|+|+|++|++++.+ +.|.+|++. ++. .+..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 34444779999999995 34 333333 477789999999999999988886 999999997 554 334455444
Q ss_pred CeEEEEecCCCCcceEEEE-ecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc
Q 048801 329 AVTAIAFSPRPSAIYQLLS-SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA 407 (1715)
Q Consensus 329 ~VtsLafSPdg~~~~~LaS-gS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp 407 (1715)
.+.+++|+|++. +|++ +..++.|.+||+..+......... .....+.+++|+|
T Consensus 85 ~~~~~~~s~dg~---~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-----------------------~~~~~~~~~~~s~ 138 (343)
T 1ri6_A 85 SLTHISTDHQGQ---FVFVGSYNAGNVSVTRLEDGLPVGVVDVV-----------------------EGLDGCHSANISP 138 (343)
T ss_dssp CCSEEEECTTSS---EEEEEETTTTEEEEEEEETTEEEEEEEEE-----------------------CCCTTBCCCEECT
T ss_pred CCcEEEEcCCCC---EEEEEecCCCeEEEEECCCCccccccccc-----------------------cCCCCceEEEECC
Confidence 789999999997 5544 455899999999532211111000 0122378899999
Q ss_pred CCCeEEEec-CCCeEEEEeCCC-CCccCCCCCceeee--eecC-CCCCeeEEEEccCcccccccccccccccccccccCC
Q 048801 408 NGTVFVTGS-SDTFARVWSACK-SSVEDSEQPIHELD--VLSG-HENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNS 482 (1715)
Q Consensus 408 dG~~LatGs-~DG~IrVWDl~t-~~~~~~~~~~~~l~--~l~g-H~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s 482 (1715)
+|++|++++ .++.|.+|++.+ ++. ..+. .+.. ....+.+++|+|++
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~pdg---------------------- 189 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHL-------VAQDPAEVTTVEGAGPRHMVFHPNE---------------------- 189 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCE-------EEEEEEEEECSTTCCEEEEEECTTS----------------------
T ss_pred CCCEEEEecCCCCEEEEEEecCCCce-------eeecccccccCCCCCcceEEECCCC----------------------
Confidence 999877776 889999999975 321 1111 2222 33478889999987
Q ss_pred cccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEE
Q 048801 483 WFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA 562 (1715)
Q Consensus 483 ~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaT 562 (1715)
...++++..++.|.+|++..... . +.........+ .-......+..++|+|+|++|++
T Consensus 190 ---~~l~~~~~~~~~i~~~~~~~~~g--~---~~~~~~~~~~~--------------~~~~~~~~~~~i~~s~dg~~l~v 247 (343)
T 1ri6_A 190 ---QYAYCVNELNSSVDVWELKDPHG--N---IECVQTLDMMP--------------ENFSDTRWAADIHITPDGRHLYA 247 (343)
T ss_dssp ---SEEEEEETTTTEEEEEESSCTTS--C---CEEEEEEECSC--------------TTCCSCCCEEEEEECTTSSEEEE
T ss_pred ---CEEEEEeCCCCEEEEEEecCCCC--c---EEEEeeccccC--------------ccccccCCccceEECCCCCEEEE
Confidence 22445666899999999963110 0 00000000000 00011335778999999998875
Q ss_pred Ee-cCCeEEEEECC--C--CceEEEEecCCCCeEEEEEccCCCcEEEEEe-CCCcEEEEE--CCCCc--eEEEEEcccce
Q 048801 563 AI-MDCRICVWNAV--D--GSLVHSLTGHSASSYVLDVHPFNPRIAMSAG-YDGRTIVWD--IWEGT--PIRIYEIGRFK 632 (1715)
Q Consensus 563 gs-~DGtI~IWDl~--s--g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs-~DGtI~VWD--l~tgk--~l~tl~~h~~~ 632 (1715)
+. .++.|.+|++. + .+.+..+..+.. +.+++|+| ++++|++++ .++.|.||+ ..+|+ .+..+..+ ..
T Consensus 248 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~ 324 (343)
T 1ri6_A 248 CDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QG 324 (343)
T ss_dssp EETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECT-TSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SS
T ss_pred EecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECC-CCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CC
Confidence 44 78999999998 3 345555655554 88999999 555555555 789999995 44664 34444432 33
Q ss_pred EEEEEEcCCC
Q 048801 633 LVDGKFSPDG 642 (1715)
Q Consensus 633 V~svafSPDG 642 (1715)
..+++|.|+.
T Consensus 325 p~~i~~~~~~ 334 (343)
T 1ri6_A 325 PMWVVVNAHE 334 (343)
T ss_dssp CCEEEEEEEC
T ss_pred CeeEEEEccc
Confidence 5566676654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.2e-19 Score=207.49 Aligned_cols=286 Identities=9% Similarity=0.025 Sum_probs=214.7
Q ss_pred CCCeEEEEECCCCCEEEEEeC-------CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEE
Q 048801 285 EGDITDLAVSSNNTLVASASN-------DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~-------DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIW 357 (1715)
...+..++|+|++++|++++. ++.|.+||+.+++.+..+.. ...+.+++|+|+++. .+++...++.|.+|
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~--l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQT--LWFGNTVNSAVTAI 116 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTE--EEEEETTTTEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCE--EEEEecCCCEEEEE
Confidence 456789999999998888874 56899999999998888764 445789999999873 45666778999999
Q ss_pred ecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec--CCCeEEEEeCCCCCccCCC
Q 048801 358 DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS--SDTFARVWSACKSSVEDSE 435 (1715)
Q Consensus 358 Dl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs--~DG~IrVWDl~t~~~~~~~ 435 (1715)
|+.+++.+..+........ .......+.+++|+|+|+++++++ .++.|.+||+.+++
T Consensus 117 d~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~----- 175 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRT----------------EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK----- 175 (353)
T ss_dssp ETTTCCEEEEEESCCCCCC----------------SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE-----
T ss_pred eCCCCeeEEEEecCCCccc----------------cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc-----
Confidence 9999887666544221100 001122468899999999777665 47899999998643
Q ss_pred CCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccc
Q 048801 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW 515 (1715)
Q Consensus 436 ~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~ 515 (1715)
.+..+..+...+.+++|+|++ +.|++++.++.|.+||+.+++.......
T Consensus 176 ----~~~~~~~~~~~~~~~~~s~dg--------------------------~~l~~~~~~~~i~~~d~~~~~~~~~~~~- 224 (353)
T 3vgz_A 176 ----LKTAIQNTGKMSTGLALDSEG--------------------------KRLYTTNADGELITIDTADNKILSRKKL- 224 (353)
T ss_dssp ----EEEEECCCCTTCCCCEEETTT--------------------------TEEEEECTTSEEEEEETTTTEEEEEEEC-
T ss_pred ----eEEEecCCCCccceEEECCCC--------------------------CEEEEEcCCCeEEEEECCCCeEEEEEEc-
Confidence 344455455568889999986 6788888899999999987553221100
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC-CeEEEEECCCCceEEEEecCCCCeEEEE
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD-CRICVWNAVDGSLVHSLTGHSASSYVLD 594 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D-GtI~IWDl~sg~~l~tL~gH~~~V~sLa 594 (1715)
...++...+..++|+|+|++|++++.+ +.|.+||+.+++.+..+..+.. .+++
T Consensus 225 ------------------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~ 278 (353)
T 3vgz_A 225 ------------------------LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVL 278 (353)
T ss_dssp ------------------------CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEE
T ss_pred ------------------------CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEE
Confidence 001134457889999999988776654 8999999999999888875443 5799
Q ss_pred EccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCC
Q 048801 595 VHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG 652 (1715)
Q Consensus 595 fSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG 652 (1715)
|+|++..++++...++.|.+||+.+++.+..+..+ ..+..++|+|||++|+++...+
T Consensus 279 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 279 FNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred ECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 99955556667668999999999999999888754 4678999999999888776553
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.6e-19 Score=208.29 Aligned_cols=284 Identities=10% Similarity=0.016 Sum_probs=198.7
Q ss_pred EEECCCCC-EEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCC-ccee
Q 048801 291 LAVSSNNT-LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQY-SPRI 368 (1715)
Q Consensus 291 LafSpDg~-lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~-l~~i 368 (1715)
..|.+++. .+++++.++.|.+||+.+++.+..+..+...+ +++|+|+++. .++++..++.|.+||+.+++. ...+
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~--l~~~~~~~~~i~~~d~~~~~~~~~~~ 79 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSN--VVVTSDFCQTLVQIETQLEPPKVVAI 79 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCE--EEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCE--EEEEeCCCCeEEEEECCCCceeEEec
Confidence 34555554 46777889999999999999988888777777 9999999972 344455589999999988775 3322
Q ss_pred cCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC---eEEEEeCCCCCccCCCCCceeeeeec
Q 048801 369 YLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT---FARVWSACKSSVEDSEQPIHELDVLS 445 (1715)
Q Consensus 369 ~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG---~IrVWDl~t~~~~~~~~~~~~l~~l~ 445 (1715)
.. +.....+++|+|+|++|+++..++ .|.+||+.+++ .+..+.
T Consensus 80 ~~-------------------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~---------~~~~~~ 125 (331)
T 3u4y_A 80 QE-------------------------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK---------FISTIP 125 (331)
T ss_dssp EE-------------------------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE---------EEEEEE
T ss_pred cc-------------------------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCC---------eEEEEE
Confidence 11 122233499999999998666553 89999997653 233333
Q ss_pred CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCe-EEEEecCCCccCcccccccccccccCC
Q 048801 446 GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGS-AIIWIPRSRRSHGKVGRWTRAYHLKVP 524 (1715)
Q Consensus 446 gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGs-IrIWDl~t~~~~~~~~~~~~~~~l~~~ 524 (1715)
. .....+++|+|++ ...++++..++. |.+|++..........
T Consensus 126 ~-~~~~~~~~~spdg-------------------------~~l~~~~~~~~~~i~~~~~~~~g~~~~~~----------- 168 (331)
T 3u4y_A 126 I-PYDAVGIAISPNG-------------------------NGLILIDRSSANTVRRFKIDADGVLFDTG----------- 168 (331)
T ss_dssp C-CTTEEEEEECTTS-------------------------SCEEEEEETTTTEEEEEEECTTCCEEEEE-----------
T ss_pred C-CCCccceEECCCC-------------------------CEEEEEecCCCceEEEEEECCCCcEeecC-----------
Confidence 3 3456899999987 235556666688 9999987532110000
Q ss_pred CCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCce---EEEEecCCCCeEEEEEccCCC
Q 048801 525 PPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSL---VHSLTGHSASSYVLDVHPFNP 600 (1715)
Q Consensus 525 ~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~~---l~tL~gH~~~V~sLafSP~dg 600 (1715)
.........+..++|+|+|++|++++ .++.|.+||+.+++. +..+..+ ..+..++|+|++.
T Consensus 169 --------------~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~ 233 (331)
T 3u4y_A 169 --------------QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGS 233 (331)
T ss_dssp --------------EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSS
T ss_pred --------------CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCC
Confidence 01112334578999999999665554 688999999999998 7777754 5568999999544
Q ss_pred cEEEEEeCCCcEEEEECCCCce--EEEEEcc----cce---EEEEEEcCCCCEEEEEeC-CCeEEEEECCCCc
Q 048801 601 RIAMSAGYDGRTIVWDIWEGTP--IRIYEIG----RFK---LVDGKFSPDGTSIVLSDD-VGQIYLLNTGQGE 663 (1715)
Q Consensus 601 ~lLaSgs~DGtI~VWDl~tgk~--l~tl~~h----~~~---V~svafSPDG~~LAsgs~-DG~I~IWdl~tGe 663 (1715)
.++++...++.|.+||+.+++. +..+..+ ... +..++|+|||++|++++. ++.|.||++....
T Consensus 234 ~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 234 TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 4555656688999999999887 5544422 111 245899999999876654 6799999997654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-19 Score=207.24 Aligned_cols=255 Identities=17% Similarity=0.122 Sum_probs=188.6
Q ss_pred EEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC-CCceEEEeCCC-CCeEEEEecC
Q 048801 260 TGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD-GLPISVLRGHT-GAVTAIAFSP 337 (1715)
Q Consensus 260 TGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t-g~~l~~L~gH~-~~VtsLafSP 337 (1715)
+++.|+.|++||+.+++.. .+..|...|.+++|+|+|++|++++ ++.|++||+.+ +.....+.+|. ..|.+++|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 4467899999999988766 4556899999999999999999987 78999999999 88777766663 6789999999
Q ss_pred CCCcceEEEEec--CCCcEEEEec--CCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEE
Q 048801 338 RPSAIYQLLSSS--DDGTCRIWDA--RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFV 413 (1715)
Q Consensus 338 dg~~~~~LaSgS--~DGtVrIWDl--~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~La 413 (1715)
++. +|++++ .++.+.||.+ .++.. ..+ .....+.+++|+|+|+.|+
T Consensus 95 dg~---~l~~~~~~~~~~~~l~~~~~~~~~~-~~~--------------------------~~~~~~~~~~~spdg~~l~ 144 (297)
T 2ojh_A 95 DGA---LYAISDKVEFGKSAIYLLPSTGGTP-RLM--------------------------TKNLPSYWHGWSPDGKSFT 144 (297)
T ss_dssp TSS---EEEEEECTTTSSCEEEEEETTCCCC-EEC--------------------------CSSSSEEEEEECTTSSEEE
T ss_pred CCC---EEEEEEeCCCCcceEEEEECCCCce-EEe--------------------------ecCCCccceEECCCCCEEE
Confidence 998 777777 4455666654 33321 111 0112378899999999877
Q ss_pred -EecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEE
Q 048801 414 -TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTC 492 (1715)
Q Consensus 414 -tGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSg 492 (1715)
+++.++.+.||++.... .....+..+...+.+++|+|++ ..|+.+
T Consensus 145 ~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~s~dg--------------------------~~l~~~ 190 (297)
T 2ojh_A 145 YCGIRDQVFDIYSMDIDS--------GVETRLTHGEGRNDGPDYSPDG--------------------------RWIYFN 190 (297)
T ss_dssp EEEEETTEEEEEEEETTT--------CCEEECCCSSSCEEEEEECTTS--------------------------SEEEEE
T ss_pred EEECCCCceEEEEEECCC--------CcceEcccCCCccccceECCCC--------------------------CEEEEE
Confidence 77789999999864321 1234566777889999999987 555544
Q ss_pred -cCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC-----
Q 048801 493 -SRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD----- 566 (1715)
Q Consensus 493 -S~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D----- 566 (1715)
..++.+.||++... +.....+..+...+.+++|+|+|++|++++.+
T Consensus 191 ~~~~~~~~i~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 242 (297)
T 2ojh_A 191 SSRTGQMQIWRVRVD----------------------------GSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFD 242 (297)
T ss_dssp ECTTSSCEEEEEETT----------------------------SSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred ecCCCCccEEEECCC----------------------------CCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCc
Confidence 46999999987521 11223344456678899999999999988766
Q ss_pred ------CeEEEEECCCCce--EEEEecCCCCeEEEEEccCCCcEEEEEeCC
Q 048801 567 ------CRICVWNAVDGSL--VHSLTGHSASSYVLDVHPFNPRIAMSAGYD 609 (1715)
Q Consensus 567 ------GtI~IWDl~sg~~--l~tL~gH~~~V~sLafSP~dg~lLaSgs~D 609 (1715)
+.|++||+.+++. +..+.+|...+.+++|+| ++..|++++.+
T Consensus 243 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~ 292 (297)
T 2ojh_A 243 HPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSP-DGDEFAYVRYF 292 (297)
T ss_dssp CCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCT-TSSEEEEEEEC
T ss_pred ccccCceEEEEEecCCCCceeeeccCCCCcccccceECC-CCCEEEEEEec
Confidence 5699999998876 444558888999999999 55555555443
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.4e-19 Score=208.21 Aligned_cols=287 Identities=9% Similarity=-0.015 Sum_probs=201.6
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEecCCCC--CeEEEEECCCCCEEE-EEeCCCeeEEEECCCCCceEEEeC-C----C
Q 048801 256 RFVITGSDDRLVKIWSMETAFCLASCRGHEG--DITDLAVSSNNTLVA-SASNDFVIRVWRLPDGLPISVLRG-H----T 327 (1715)
Q Consensus 256 ~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~--~VtsLafSpDg~lLA-SGS~DGtIrVWDl~tg~~l~~L~g-H----~ 327 (1715)
.+|++++.++.|.+||+.+++.+..+..... .+.+++|+|+|++|+ +++.++.|.+||+.+++.+..+.. + .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999999999888763322 488999999997664 555678999999999998877763 2 2
Q ss_pred CCeEEEEecCCCCcceEEEEec------------CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCC
Q 048801 328 GAVTAIAFSPRPSAIYQLLSSS------------DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL 395 (1715)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgS------------~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~ 395 (1715)
..+.+++|+|++. +|++++ .++.|.+||+.+++....+..
T Consensus 82 ~~~~~~~~s~dg~---~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~------------------------- 133 (337)
T 1pby_B 82 KSLFGAALSPDGK---TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA------------------------- 133 (337)
T ss_dssp ECTTCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-------------------------
T ss_pred ccccceEECCCCC---EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-------------------------
Confidence 2677899999997 566664 579999999988765544321
Q ss_pred CCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccc
Q 048801 396 QSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 396 h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
...+.+++|+|+|++|+++ ++.|.+||+.+++. +..+..+.. ...+.|+|++.....
T Consensus 134 -~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~---------~~~~~~~~~-~~~~~~s~dg~~l~~---------- 190 (337)
T 1pby_B 134 -PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTL---------VEDKPIQSW-EAETYAQPDVLAVWN---------- 190 (337)
T ss_dssp -CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEE---------EEEECSTTT-TTTTBCCCBCCCCCC----------
T ss_pred -CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcE---------eeeeecccc-CCCceeCCCccEEee----------
Confidence 1236778999999988887 68899999987532 222322220 011255665410000
Q ss_pred cccccCCcccCc----eEEEEcCCC----------eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc
Q 048801 476 VPKFKNSWFCHD----NIVTCSRDG----------SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL 541 (1715)
Q Consensus 476 ~~~~~~s~~~~~----~LaSgS~DG----------sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l 541 (1715)
.. .... .......++ .|.+||+.+++.. . ..+
T Consensus 191 -----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~---------------------------~~~ 236 (337)
T 1pby_B 191 -----QH-ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-M---------------------------REV 236 (337)
T ss_dssp -----CC-TTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-E---------------------------EEE
T ss_pred -----ec-cCCCceeeeeeccccccccccccccccceEEEeCCCCCce-E---------------------------eec
Confidence 00 0000 111111222 5788888765421 0 111
Q ss_pred cCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 542 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 542 ~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
..+...+.+++|+|+|++|+++ ++.|++||+.+++.+..+..+ ..+.+++|+| ++++|++++.++.|.+||+.+++
T Consensus 237 ~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 237 RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVST-DGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECT-TSCEEEEESBSSEEEEEETTTCC
T ss_pred CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECC-CCCEEEEEcCCCcEEEEECcCCc
Confidence 2234567889999999999988 799999999999988887644 4578999999 56666677889999999999999
Q ss_pred eEEEEEcccc
Q 048801 622 PIRIYEIGRF 631 (1715)
Q Consensus 622 ~l~tl~~h~~ 631 (1715)
.+..+..+..
T Consensus 313 ~~~~~~~~~~ 322 (337)
T 1pby_B 313 KKGQVDLPGN 322 (337)
T ss_dssp EEEEEECGGG
T ss_pred EEEEEEcCCC
Confidence 9988875543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.5e-19 Score=230.84 Aligned_cols=290 Identities=12% Similarity=0.066 Sum_probs=205.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC-----CC
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD-----GL 318 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t-----g~ 318 (1715)
..|.+++|+|| ++|+.+. ++.|++||+.+++... +..+...+.+++|||||++||++ .++.|++|++.+ ++
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 57999999999 6666554 5999999999887654 44577789999999999999995 679999999998 87
Q ss_pred ceEEEeCCCCC--------------eEEEEecCCCCcceEEEEec---------------------------------CC
Q 048801 319 PISVLRGHTGA--------------VTAIAFSPRPSAIYQLLSSS---------------------------------DD 351 (1715)
Q Consensus 319 ~l~~L~gH~~~--------------VtsLafSPdg~~~~~LaSgS---------------------------------~D 351 (1715)
.......+... +.+++|+|+++ +|++++ .+
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~---~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~ 234 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS---CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH 234 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS---EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC---EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence 76655544443 48999999998 677776 45
Q ss_pred CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC-----eEEEEeC
Q 048801 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT-----FARVWSA 426 (1715)
Q Consensus 352 GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG-----~IrVWDl 426 (1715)
..|.+||+.+++..... . ...+...+.+++|+|||+.|++++.++ .|.+||+
T Consensus 235 ~~l~~~d~~~~~~~~~~-~----------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~ 291 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQ-T----------------------GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDA 291 (706)
T ss_dssp EEEEEEETTTTEEEECC-C----------------------CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEET
T ss_pred eEEEEEECCCCceEeec-c----------------------CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEEC
Confidence 67999999876532111 0 012345689999999999999877665 8999999
Q ss_pred CCCCccCCCCCceeeeeecCCC---CCeeEEEEcc--CcccccccccccccccccccccCCcccCceEEEEcCCCeEEEE
Q 048801 427 CKSSVEDSEQPIHELDVLSGHE---NDVNYVQFSG--CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW 501 (1715)
Q Consensus 427 ~t~~~~~~~~~~~~l~~l~gH~---~~V~sLafsp--dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIW 501 (1715)
.+++. ...+.. ..+. ..+.+++|+| ++ .+|++++.||.+.||
T Consensus 292 ~~g~~------~~~~~~-~~~~~~~~~~~~~~~sp~~dg--------------------------~~l~~~~~~g~~~l~ 338 (706)
T 2z3z_A 292 ETGRF------VRTLFV-ETDKHYVEPLHPLTFLPGSNN--------------------------QFIWQSRRDGWNHLY 338 (706)
T ss_dssp TTCCE------EEEEEE-EECSSCCCCCSCCEECTTCSS--------------------------EEEEEECTTSSCEEE
T ss_pred CCCce------eeEEEE-ccCCCeECccCCceeecCCCC--------------------------EEEEEEccCCccEEE
Confidence 87521 111111 1111 2346788998 76 688889999999999
Q ss_pred ecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeE-EEeCCCCCEEEEEecC-C----eEEEEECC
Q 048801 502 IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNM-IVWSLDNRFVLAAIMD-C----RICVWNAV 575 (1715)
Q Consensus 502 Dl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vts-lafSPDG~~LaTgs~D-G----tI~IWDl~ 575 (1715)
.+... +.....+..+...+.. ++|+|+|+.|++++.+ + .|+.||+.
T Consensus 339 ~~~~~----------------------------~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 390 (706)
T 2z3z_A 339 LYDTT----------------------------GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK 390 (706)
T ss_dssp EEETT----------------------------SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred EEECC----------------------------CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC
Confidence 87520 1112223344556766 7999999988766554 3 67888887
Q ss_pred CCceEEEEecCCCCeEEEEEccCCCcEEEEEeCC---CcEEEEECCCCceEEEEE
Q 048801 576 DGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYD---GRTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 576 sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~D---GtI~VWDl~tgk~l~tl~ 627 (1715)
+++ +..+. |...+.+++|+|++..++++++.+ +.|++||+.+++ +..+.
T Consensus 391 ~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~ 442 (706)
T 2z3z_A 391 GGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLE 442 (706)
T ss_dssp CCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEEE
T ss_pred CCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeecc
Confidence 776 34443 677799999999554454444443 569999998887 44443
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=206.04 Aligned_cols=255 Identities=15% Similarity=0.127 Sum_probs=188.2
Q ss_pred EEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC-CCCcceecCCCCCCCccCc
Q 048801 302 SASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY-SQYSPRIYLPKPPDAITGK 380 (1715)
Q Consensus 302 SGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t-g~~l~~i~~~~~~~~i~g~ 380 (1715)
+++.|+.|++||+.+++.. .+..|...|.+++|+|++. +|++++ ++.|.+||+.+ ++......
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~---~l~~~~-~~~i~~~d~~~~~~~~~~~~----------- 80 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGK---YLLLNS-EGLLYRLSLAGDPSPEKVDT----------- 80 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSS---EEEEEE-TTEEEEEESSSCCSCEECCC-----------
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCC---EEEEEc-CCeEEEEeCCCCCCceEecc-----------
Confidence 3467899999999988765 4556899999999999998 677766 78999999987 65432110
Q ss_pred cCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec--CCCeEEEEeC--CCCCccCCCCCceeeeeecCCCCCeeEEEE
Q 048801 381 SNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS--SDTFARVWSA--CKSSVEDSEQPIHELDVLSGHENDVNYVQF 456 (1715)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs--~DG~IrVWDl--~t~~~~~~~~~~~~l~~l~gH~~~V~sLaf 456 (1715)
..+...+.+++|+|+|++|++++ .++.+.||.+ .++. ...+..+. .+.+++|
T Consensus 81 -------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~-~~~~~~~ 136 (297)
T 2ojh_A 81 -------------GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT----------PRLMTKNL-PSYWHGW 136 (297)
T ss_dssp -------------TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC----------CEECCSSS-SEEEEEE
T ss_pred -------------ccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc----------eEEeecCC-CccceEE
Confidence 01134578899999999999988 3345555554 3321 22333333 4888999
Q ss_pred ccCcccccccccccccccccccccCCcccCceEE-EEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCC
Q 048801 457 SGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIV-TCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRG 535 (1715)
Q Consensus 457 spdg~as~~~~~~~~~~~~~~~~~~s~~~~~~La-SgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 535 (1715)
+|++ ..|+ +++.++.+.||++....
T Consensus 137 spdg--------------------------~~l~~~~~~~~~~~l~~~~~~~---------------------------- 162 (297)
T 2ojh_A 137 SPDG--------------------------KSFTYCGIRDQVFDIYSMDIDS---------------------------- 162 (297)
T ss_dssp CTTS--------------------------SEEEEEEEETTEEEEEEEETTT----------------------------
T ss_pred CCCC--------------------------CEEEEEECCCCceEEEEEECCC----------------------------
Confidence 9987 4454 78899999999865211
Q ss_pred CCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECC-CCceEEEEecCCCCeEEEEEccCCCcEEEEEeCC----
Q 048801 536 GPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAV-DGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYD---- 609 (1715)
Q Consensus 536 ~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~-sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~D---- 609 (1715)
.....+..+...+.+++|+|+|++|++++ .++.+.||++. .+..+..+..|...+.+++|+| ++.+|++++.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 163 GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP-SGDKVVFVSYDADVF 241 (297)
T ss_dssp CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT-TSSEEEEEEEETTCC
T ss_pred CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC-CCCEEEEEEcCCCCC
Confidence 11223445567789999999999888776 58899999986 5667788888888899999999 66666666554
Q ss_pred -------CcEEEEECCCCceE--EEEEcccceEEEEEEcCCCCEEEEEeCC
Q 048801 610 -------GRTIVWDIWEGTPI--RIYEIGRFKLVDGKFSPDGTSIVLSDDV 651 (1715)
Q Consensus 610 -------GtI~VWDl~tgk~l--~tl~~h~~~V~svafSPDG~~LAsgs~D 651 (1715)
+.|++||+.+++.. ..+..|...+..++|+|||++|++++.+
T Consensus 242 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp SCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred cccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 56999999988764 4444677788999999999999987664
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.8e-20 Score=240.83 Aligned_cols=340 Identities=9% Similarity=0.025 Sum_probs=226.3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCC---CeEEEEECCCCCEEEEEeC---------CCeeEEEECC
Q 048801 248 CAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEG---DITDLAVSSNNTLVASASN---------DFVIRVWRLP 315 (1715)
Q Consensus 248 ~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~---~VtsLafSpDg~lLASGS~---------DGtIrVWDl~ 315 (1715)
+++|+|||++++++ .|+.|++||+.+++....+.+|.. .|.+++|||||++||+++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 67899999665554 699999999999998887776644 4899999999999999876 7899999999
Q ss_pred CCCce--EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCC
Q 048801 316 DGLPI--SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393 (1715)
Q Consensus 316 tg~~l--~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~ 393 (1715)
+++.+ ..+ ...+.+++|+|+++ .|+++. ++.|++|++.+++... +....... ...
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~---~la~~~-~~~i~~~~~~~g~~~~-l~~~~~~~---------------~v~ 155 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGS---KLAYVY-QNNIYLKQRPGDPPFQ-ITFNGREN---------------KIF 155 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTT---CEEEEE-TTEEEEESSTTSCCEE-CCCCCBTT---------------TEE
T ss_pred CCccccceec---CcccccceECCCCC---EEEEEE-CCeEEEEeCCCCCcEE-EecCCCcC---------------CeE
Confidence 88752 222 35688999999998 566664 7899999998876532 11100000 000
Q ss_pred CCCC---------cceeEEEEccCCCeEEEecCCC----------------------------------eEEEEeCCCCC
Q 048801 394 GLQS---------HQILCCAYNANGTVFVTGSSDT----------------------------------FARVWSACKSS 430 (1715)
Q Consensus 394 ~~h~---------~~VtslafSpdG~~LatGs~DG----------------------------------~IrVWDl~t~~ 430 (1715)
.++. ....+++|+|||+.|++++.|. .|++||+.+++
T Consensus 156 ~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~ 235 (719)
T 1z68_A 156 NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA 235 (719)
T ss_dssp ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH
T ss_pred cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC
Confidence 0111 1125899999999999887542 78899987643
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC--C--CeEEEEe----
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR--D--GSAIIWI---- 502 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~--D--GsIrIWD---- 502 (1715)
..... .......+.+|...+.+++|+|++ ..+++... + ..|.+||
T Consensus 236 ~~~~~-~~~~~~~~~~~~~~~~~~~~SpD~--------------------------~~~~~~~~~~~~~~~l~~~d~~~~ 288 (719)
T 1z68_A 236 YVGPQ-EVPVPAMIASSDYYFSWLTWVTDE--------------------------RVCLQWLKRVQNVSVLSICDFRED 288 (719)
T ss_dssp HHCCE-ECCCCHHHHTSCEEEEEEEESSSS--------------------------EEEEEEEESSTTEEEEEEEEECSS
T ss_pred cccee-EccCCccCCCCcceEEEeEEeCCC--------------------------eEEEEEeccccCeEEEEEEcccCC
Confidence 20000 000002245688889999999986 45555332 2 3478888
Q ss_pred cCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCee-----EEEeCCCCCEEEE--EecCC--eEEEEE
Q 048801 503 PRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVN-----MIVWSLDNRFVLA--AIMDC--RICVWN 573 (1715)
Q Consensus 503 l~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vt-----slafSPDG~~LaT--gs~DG--tI~IWD 573 (1715)
+.+++...... .....+...+. .++|+|||+.|+. +..+| .|++|+
T Consensus 289 ~~~g~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~ 343 (719)
T 1z68_A 289 WQTWDCPKTQE-------------------------HIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIK 343 (719)
T ss_dssp SSSEECCGGGE-------------------------EEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEES
T ss_pred CCCCceEEEEe-------------------------cccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEE
Confidence 66543211100 00012333444 6899999996654 33444 577888
Q ss_pred CCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeC----CCcEEEEECCC--Cc-eEEEEEc----ccceEEEEEEcCCC
Q 048801 574 AVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGY----DGRTIVWDIWE--GT-PIRIYEI----GRFKLVDGKFSPDG 642 (1715)
Q Consensus 574 l~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~----DGtI~VWDl~t--gk-~l~tl~~----h~~~V~svafSPDG 642 (1715)
+.+++ ...+..+...+..+.++ +++.+++++.. ++.++||.+.. +. ....+.. +...+..+.|+|||
T Consensus 344 ~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg 421 (719)
T 1z68_A 344 DTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYA 421 (719)
T ss_dssp SCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGG
T ss_pred CCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCC
Confidence 87776 55666667778888777 57677766655 58899998754 42 1233332 44567889999999
Q ss_pred CEEEEEe-CC--CeEEEEECCCCccc
Q 048801 643 TSIVLSD-DV--GQIYLLNTGQGESQ 665 (1715)
Q Consensus 643 ~~LAsgs-~D--G~I~IWdl~tGe~~ 665 (1715)
++|+... .. ..+++|++.+|+..
T Consensus 422 ~~l~~~~s~~~~p~~~l~d~~~g~~~ 447 (719)
T 1z68_A 422 KYYALVCYGPGIPISTLHDGRTDQEI 447 (719)
T ss_dssp SSEEEEECCBSSCEEEEECSSSCCEE
T ss_pred CEEEEEcCCCCCCeEEEEECCCCCEE
Confidence 9888543 22 47899999888643
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.3e-19 Score=205.84 Aligned_cols=275 Identities=11% Similarity=0.063 Sum_probs=199.7
Q ss_pred CEEEEEeCCCeeEEEECCCCCceEEEeCCCC--CeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCC
Q 048801 298 TLVASASNDFVIRVWRLPDGLPISVLRGHTG--AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPD 375 (1715)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~--~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~ 375 (1715)
.+|++++.++.|.+||+.+++.+..+..... .+.+++|+|+++. ++++++.++.|.+||+.+++.+..+.....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-- 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRI--AYATVNKSESLVKIDLVTGETLGRIDLSTP-- 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSE--EEEEETTTTEEEEEETTTCCEEEEEECCBT--
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCE--EEEEeCCCCeEEEEECCCCCeEeeEEcCCc--
Confidence 4789999999999999999998888763322 5889999999872 456777789999999998876555433110
Q ss_pred CccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec------------CCCeEEEEeCCCCCccCCCCCceeeee
Q 048801 376 AITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS------------SDTFARVWSACKSSVEDSEQPIHELDV 443 (1715)
Q Consensus 376 ~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs------------~DG~IrVWDl~t~~~~~~~~~~~~l~~ 443 (1715)
..+...+.+++|+|+|++|++++ .++.|.+||+.+++ .+..
T Consensus 78 ------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---------~~~~ 130 (337)
T 1pby_B 78 ------------------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS---------RRKA 130 (337)
T ss_dssp ------------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE---------EEEE
T ss_pred ------------------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc---------EEEE
Confidence 00122467899999999888885 57999999997643 2333
Q ss_pred ecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccC
Q 048801 444 LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523 (1715)
Q Consensus 444 l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~ 523 (1715)
+.. ...+.+++|+|++ +.|+++ ++.|.+||+.+++....+..
T Consensus 131 ~~~-~~~~~~~~~s~dg--------------------------~~l~~~--~~~i~~~d~~~~~~~~~~~~--------- 172 (337)
T 1pby_B 131 FEA-PRQITMLAWARDG--------------------------SKLYGL--GRDLHVMDPEAGTLVEDKPI--------- 172 (337)
T ss_dssp EEC-CSSCCCEEECTTS--------------------------SCEEEE--SSSEEEEETTTTEEEEEECS---------
T ss_pred EeC-CCCcceeEECCCC--------------------------CEEEEe--CCeEEEEECCCCcEeeeeec---------
Confidence 332 3457788999987 556666 68999999987553211100
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC------------------------eEEEEECCCCce
Q 048801 524 PPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC------------------------RICVWNAVDGSL 579 (1715)
Q Consensus 524 ~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG------------------------tI~IWDl~sg~~ 579 (1715)
. ..... ++|+|+|..|++++..+ .|.+||+.+++.
T Consensus 173 ~------------------~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 231 (337)
T 1pby_B 173 Q------------------SWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231 (337)
T ss_dssp T------------------TTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred c------------------ccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence 0 00011 15666666554433221 578999999887
Q ss_pred E-EEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 580 V-HSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 580 l-~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
. ..+..+...+.+++|+| ++++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|||++|++++.++.|.+||
T Consensus 232 ~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 232 AMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred eEeecCCCCCceeeEEECC-CCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 5 23456677889999999 56666666 799999999999998888743 4678999999999999999999999999
Q ss_pred CCCCcccc
Q 048801 659 TGQGESQK 666 (1715)
Q Consensus 659 l~tGe~~k 666 (1715)
+.+++.+.
T Consensus 308 ~~~~~~~~ 315 (337)
T 1pby_B 308 AETLEKKG 315 (337)
T ss_dssp TTTCCEEE
T ss_pred CcCCcEEE
Confidence 99887654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-18 Score=204.58 Aligned_cols=279 Identities=12% Similarity=0.146 Sum_probs=187.5
Q ss_pred EEEEEeCCCeeEEEECC-CCC--ceEEEeCCCCCeEEEEecCCCCcceEEEEecCC-CcEEEEecC--CCCCcceecCCC
Q 048801 299 LVASASNDFVIRVWRLP-DGL--PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD-GTCRIWDAR--YSQYSPRIYLPK 372 (1715)
Q Consensus 299 lLASGS~DGtIrVWDl~-tg~--~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D-GtVrIWDl~--tg~~l~~i~~~~ 372 (1715)
++++++.|+.|++|++. ++. .+.. ..|...+.+++|+|++. +|++++.+ +.|.+|++. ++.........
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~---~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~- 81 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKR---YLYVGVRPEFRVLAYRIAPDDGALTFAAESA- 81 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSS---EEEEEETTTTEEEEEEECTTTCCEEEEEEEE-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCC---EEEEeecCCCeEEEEEecCCCCceeeccccc-
Confidence 44455789999999995 332 2333 34778899999999998 67777665 999999997 44422111110
Q ss_pred CCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCe
Q 048801 373 PPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS-SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDV 451 (1715)
Q Consensus 373 ~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs-~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V 451 (1715)
....+.+++|+|+|++|++++ .++.|.+|++..+. ....+..+..+ ..+
T Consensus 82 -----------------------~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~------~~~~~~~~~~~-~~~ 131 (343)
T 1ri6_A 82 -----------------------LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL------PVGVVDVVEGL-DGC 131 (343)
T ss_dssp -----------------------CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTE------EEEEEEEECCC-TTB
T ss_pred -----------------------cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc------cccccccccCC-CCc
Confidence 012478999999999776655 48899999994221 12233333333 358
Q ss_pred eEEEEccCcccccccccccccccccccccCCcccCceEEEEc-CCCeEEEEecCC-CccCcccccccccccccCCCCCCC
Q 048801 452 NYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RDGSAIIWIPRS-RRSHGKVGRWTRAYHLKVPPPPLP 529 (1715)
Q Consensus 452 ~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~DGsIrIWDl~t-~~~~~~~~~~~~~~~l~~~~~~~~ 529 (1715)
.+++|+|++ +.|++++ .++.|.+||+.+ +.... .. ..
T Consensus 132 ~~~~~s~dg--------------------------~~l~~~~~~~~~v~~~d~~~~~~~~~-~~--~~------------ 170 (343)
T 1ri6_A 132 HSANISPDN--------------------------RTLWVPALKQDRICLFTVSDDGHLVA-QD--PA------------ 170 (343)
T ss_dssp CCCEECTTS--------------------------SEEEEEEGGGTEEEEEEECTTSCEEE-EE--EE------------
T ss_pred eEEEECCCC--------------------------CEEEEecCCCCEEEEEEecCCCceee-ec--cc------------
Confidence 889999986 4555555 899999999975 32100 00 00
Q ss_pred CCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCC--Cce--EEEEe----cC--CCCeEEEEEccC
Q 048801 530 PQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVD--GSL--VHSLT----GH--SASSYVLDVHPF 598 (1715)
Q Consensus 530 ~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~s--g~~--l~tL~----gH--~~~V~sLafSP~ 598 (1715)
.........+..++|+|+|++|++++ .++.|.+|++.. ++. +..+. ++ ...+.+++|+|+
T Consensus 171 ---------~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 241 (343)
T 1ri6_A 171 ---------EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD 241 (343)
T ss_dssp ---------EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred ---------ccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC
Confidence 00011234577899999999776555 789999999953 443 33332 11 235678999995
Q ss_pred CCcEEEEEeCCCcEEEEECC--C--CceEEEEEcccceEEEEEEcCCCCEEEEEe-CCCeEEEEEC--CCCc
Q 048801 599 NPRIAMSAGYDGRTIVWDIW--E--GTPIRIYEIGRFKLVDGKFSPDGTSIVLSD-DVGQIYLLNT--GQGE 663 (1715)
Q Consensus 599 dg~lLaSgs~DGtI~VWDl~--t--gk~l~tl~~h~~~V~svafSPDG~~LAsgs-~DG~I~IWdl--~tGe 663 (1715)
+..+++++..++.|.+||+. + .+.+..+..+.. +..++|+|||++|++++ .++.|.+|++ .+|+
T Consensus 242 g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 242 GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCce
Confidence 55566677789999999998 3 345555654443 88999999999999887 6899999954 4554
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-18 Score=201.56 Aligned_cols=270 Identities=9% Similarity=0.045 Sum_probs=201.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEE-EeCCCeeEEEEC
Q 048801 243 RDAVYCAIFDRSGRFVITGSD-------DRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVAS-ASNDFVIRVWRL 314 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~-------DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLAS-GS~DGtIrVWDl 314 (1715)
...+..++|+|+|++|++++. ++.|.+||..+++.+..+... ..+.+++|+++|++|++ +..++.|.+||+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 456889999999999988874 568999999999998888743 45788999999996555 455799999999
Q ss_pred CCCCceEEEeCCCCC---------eEEEEecCCCCcceEEEEe--cCCCcEEEEecCCCCCcceecCCCCCCCccCccCC
Q 048801 315 PDGLPISVLRGHTGA---------VTAIAFSPRPSAIYQLLSS--SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383 (1715)
Q Consensus 315 ~tg~~l~~L~gH~~~---------VtsLafSPdg~~~~~LaSg--S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~ 383 (1715)
.+++.+..+..+... +.+++|+|+++ +++++ +.++.|.+||+.+++....+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~~~~~~~~~~i~~~d~~~~~~~~~~~~------------- 182 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN---TVYISGIGKESVIWVVDGGNIKLKTAIQN------------- 182 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT---EEEEEEESSSCEEEEEETTTTEEEEEECC-------------
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCC---EEEEEecCCCceEEEEcCCCCceEEEecC-------------
Confidence 999988888765432 78999999987 44444 4588999999988876544421
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec----CCCCCeeEEEEccC
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS----GHENDVNYVQFSGC 459 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~----gH~~~V~sLafspd 459 (1715)
+...+.+++|+|+|++|++++.++.|.+||+.+++. +..+. ++...+..++|+|+
T Consensus 183 ------------~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~s~d 241 (353)
T 3vgz_A 183 ------------TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKI---------LSRKKLLDDGKEHFFINISLDTA 241 (353)
T ss_dssp ------------CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE---------EEEEECCCSSSCCCEEEEEEETT
T ss_pred ------------CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE---------EEEEEcCCCCCCcccceEEECCC
Confidence 122367789999999999999999999999987532 22222 35567888999998
Q ss_pred cccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcc
Q 048801 460 AVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQ 539 (1715)
Q Consensus 460 g~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~ 539 (1715)
+ ...+++...++.|.+||+.+++....+
T Consensus 242 g-------------------------~~l~~~~~~~~~v~~~d~~~~~~~~~~--------------------------- 269 (353)
T 3vgz_A 242 R-------------------------QRAFITDSKAAEVLVVDTRNGNILAKV--------------------------- 269 (353)
T ss_dssp T-------------------------TEEEEEESSSSEEEEEETTTCCEEEEE---------------------------
T ss_pred C-------------------------CEEEEEeCCCCEEEEEECCCCcEEEEE---------------------------
Confidence 7 234555556699999999875432211
Q ss_pred cccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEe
Q 048801 540 RLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607 (1715)
Q Consensus 540 ~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs 607 (1715)
... ....++|+|+|++|+++. .++.|.+||+.+++.+..+..+. .+.+++|+|++..++++..
T Consensus 270 --~~~--~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 270 --AAP--ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSADGKTLYVSVK 333 (353)
T ss_dssp --ECS--SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECTTSCEEEEEEE
T ss_pred --EcC--CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcCCCCEEEEEEc
Confidence 000 114589999999766655 68999999999999988887544 6789999995444555443
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-18 Score=225.97 Aligned_cols=314 Identities=9% Similarity=0.001 Sum_probs=208.0
Q ss_pred cccccceeEEEEcCCCC---CeEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCcEEEEec---CCCCCeEEEE
Q 048801 228 TMVQKMQNIKKLRGHRD---AVYCAIFDRSGRFVITGSDD---------RLVKIWSMETAFCLASCR---GHEGDITDLA 292 (1715)
Q Consensus 228 ~~~~~~k~l~~L~GH~~---~Vt~VafSpDG~~LaTGS~D---------GtIrIWDl~tgk~l~tL~---gHs~~VtsLa 292 (1715)
+...+.+....+.+|.. .|.+++|||||++|++++.+ +.|.+||+.+++. ..+. +|...+.+++
T Consensus 42 ~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~ 120 (723)
T 1xfd_A 42 WNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAG 120 (723)
T ss_dssp BCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCC
T ss_pred EECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccE
Confidence 34455666777888776 49999999999999999864 7888999999876 3343 4555689999
Q ss_pred ECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCe------------------EEEEecCCCCcceEEEEecCCC--
Q 048801 293 VSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAV------------------TAIAFSPRPSAIYQLLSSSDDG-- 352 (1715)
Q Consensus 293 fSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~V------------------tsLafSPdg~~~~~LaSgS~DG-- 352 (1715)
|||||++||+++. +.|++|++.++........+...+ .+++|+|+++ .|++++.|+
T Consensus 121 ~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~---~la~~~~~~~~ 196 (723)
T 1xfd_A 121 WGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT---RLAYAAINDSR 196 (723)
T ss_dssp BCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS---EEEEEEEECTT
T ss_pred ECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCC---EEEEEEECCCc
Confidence 9999999999986 799999999998877766554433 7899999998 677765442
Q ss_pred --------------------------------cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 353 --------------------------------TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 353 --------------------------------tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
.|++||+.+++....+..+ .....+...+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~-------------------~~~~~~~~~~ 257 (723)
T 1xfd_A 197 VPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP-------------------DDPRMREYYI 257 (723)
T ss_dssp SCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC-------------------CCGGGSSEEE
T ss_pred cceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC-------------------ccCCCcccee
Confidence 5777777665532222110 0011135568
Q ss_pred eEEEEccCCCeEEEecC----CCeEEEEeCCCCCccCCCCCceeeeeec-CCCCCe----eEEEEccCcccccccccccc
Q 048801 401 LCCAYNANGTVFVTGSS----DTFARVWSACKSSVEDSEQPIHELDVLS-GHENDV----NYVQFSGCAVASRSAMSDAF 471 (1715)
Q Consensus 401 tslafSpdG~~LatGs~----DG~IrVWDl~t~~~~~~~~~~~~l~~l~-gH~~~V----~sLafspdg~as~~~~~~~~ 471 (1715)
.+++|+|||++|++... +..|++||+.+++. ...+. .+...+ ..++|+|++
T Consensus 258 ~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~---------~~~~~~~~~~~~~~~~~~~~~spdg----------- 317 (723)
T 1xfd_A 258 TMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC---------TKKHEDESEAWLHRQNEEPVFSKDG----------- 317 (723)
T ss_dssp EEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE---------EEEEEEECSSCCCCCCCCCEECTTS-----------
T ss_pred EEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc---------eEEEEeccCCEEeccCCCceEcCCC-----------
Confidence 99999999998876643 36799999987542 22222 223333 378999987
Q ss_pred cccccccccCCcccCceEEE--EcCCC------eEEEEec-CCCccCcccccccccccccCCCCCCCCCCCCCCCccccc
Q 048801 472 KEENVPKFKNSWFCHDNIVT--CSRDG------SAIIWIP-RSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLL 542 (1715)
Q Consensus 472 ~~~~~~~~~~s~~~~~~LaS--gS~DG------sIrIWDl-~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~ 542 (1715)
+.|+. +..++ .|.+||+ .++.. .....+.
T Consensus 318 ---------------~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~---------------------------~~~~~l~ 355 (723)
T 1xfd_A 318 ---------------RKFFFIRAIPQGGRGKFYHITVSSSQPNSSN---------------------------DNIQSIT 355 (723)
T ss_dssp ---------------CSEEEEEEECCSSSSCEEEEEEECSSCCSSS---------------------------CCCCBSC
T ss_pred ---------------CeEEEEEecccCCCcceeEEEEEeccCCCCc---------------------------cceeEee
Confidence 44443 55677 4566662 22110 0011122
Q ss_pred CCCCCeeE-EEeCCCCCEEEEEecC---CeEEEEECCCCc--eEEEEec---CCCCeEEEEEccCCCcEEEEEeCCC--c
Q 048801 543 PTPRGVNM-IVWSLDNRFVLAAIMD---CRICVWNAVDGS--LVHSLTG---HSASSYVLDVHPFNPRIAMSAGYDG--R 611 (1715)
Q Consensus 543 ~h~~~Vts-lafSPDG~~LaTgs~D---GtI~IWDl~sg~--~l~tL~g---H~~~V~sLafSP~dg~lLaSgs~DG--t 611 (1715)
.+...+.. ++|+|||++|+..+.+ +.++||++.... ....+.+ |...+..++|+|++..++++.+..+ .
T Consensus 356 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~ 435 (723)
T 1xfd_A 356 SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPM 435 (723)
T ss_dssp CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCC
T ss_pred cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCe
Confidence 22233444 6999999999876665 789999986432 3444544 6777899999995555555555444 3
Q ss_pred EEEEECCCCceEEEEE
Q 048801 612 TIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 612 I~VWDl~tgk~l~tl~ 627 (1715)
+.+++..++..+..+.
T Consensus 436 ~~~~~~~~~~~~~~~~ 451 (723)
T 1xfd_A 436 VTVHNTTDKKKMFDLE 451 (723)
T ss_dssp EEEEETTTCCEEEEEE
T ss_pred EEEEECCCCCEEEEec
Confidence 4556665665555443
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.7e-19 Score=225.92 Aligned_cols=270 Identities=10% Similarity=0.023 Sum_probs=196.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCcEEEEecCCC-CCeEEEEECCCCCEEEEEeC---CCeeEEEECCC-
Q 048801 243 RDAVYCAIFDRSGRFVITGSD-DRLVKIWSMETAFCLASCRGHE-GDITDLAVSSNNTLVASASN---DFVIRVWRLPD- 316 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~-DGtIrIWDl~tgk~l~tL~gHs-~~VtsLafSpDg~lLASGS~---DGtIrVWDl~t- 316 (1715)
..+|++++|+|||++||+++. ||+++||++.++... .+..|. ..|.+++|+|| ++|++++. +....||.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999999887 999999999766654 455555 68999999999 78887775 45566665543
Q ss_pred --CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 317 --GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 317 --g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
+... .+..+ ..+...+|+|+++.. ++++++.++ +.+||+.+++......
T Consensus 99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~-~~~s~~~~~-~~l~d~~~g~~~~l~~------------------------- 149 (582)
T 3o4h_A 99 RPGEEQ-RLEAV-KPMRILSGVDTGEAV-VFTGATEDR-VALYALDGGGLRELAR------------------------- 149 (582)
T ss_dssp STTCCE-ECTTS-CSBEEEEEEECSSCE-EEEEECSSC-EEEEEEETTEEEEEEE-------------------------
T ss_pred CCCccc-cccCC-CCceeeeeCCCCCeE-EEEecCCCC-ceEEEccCCcEEEeec-------------------------
Confidence 3333 44433 235577899988653 455555555 5599998776432211
Q ss_pred CCCcceeEEEEccCCCeEEEecCC----CeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccc
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSD----TFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~D----G~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~ 470 (1715)
+. ..+++|+|||++|++++.+ +.|++||+.+++ ...+..|...+..++|+|++
T Consensus 150 -~~--~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~----------~~~l~~~~~~~~~~~~SpDG---------- 206 (582)
T 3o4h_A 150 -LP--GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG----------LRVFDSGEGSFSSASISPGM---------- 206 (582)
T ss_dssp -ES--SCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC----------CEEECCSSCEEEEEEECTTS----------
T ss_pred -CC--CceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC----------ceEeecCCCccccceECCCC----------
Confidence 01 1689999999999988776 789999998753 23567888889999999997
Q ss_pred ccccccccccCCcccCceEEEEcCCC--eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCe
Q 048801 471 FKEENVPKFKNSWFCHDNIVTCSRDG--SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548 (1715)
Q Consensus 471 ~~~~~~~~~~~s~~~~~~LaSgS~DG--sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V 548 (1715)
+.|+++..+| .|.+||+.+++.. .+..+...+
T Consensus 207 ----------------~~l~~~~~~~~~~i~~~d~~~~~~~------------------------------~~~~~~~~~ 240 (582)
T 3o4h_A 207 ----------------KVTAGLETAREARLVTVDPRDGSVE------------------------------DLELPSKDF 240 (582)
T ss_dssp ----------------CEEEEEECSSCEEEEEECTTTCCEE------------------------------ECCCSCSHH
T ss_pred ----------------CEEEEccCCCeeEEEEEcCCCCcEE------------------------------EccCCCcCh
Confidence 6788888888 8999999865422 112233334
Q ss_pred eEEE--------eCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCC---cEEEEEC
Q 048801 549 NMIV--------WSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDG---RTIVWDI 617 (1715)
Q Consensus 549 tsla--------fSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DG---tI~VWDl 617 (1715)
..++ |+|||.++++++.+++++||++ |+.+. .+.+.|.+++|+ +++++++++.+. .|.+|+.
T Consensus 241 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s--dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 241 SSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW--RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp HHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE--TTEEEEEEEETTEEEEEEEETT
T ss_pred hhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec--CCEEEEEEcCCCCCCeEEEEcC
Confidence 4444 9999999999999999999999 76554 345678899998 567777777764 4667776
Q ss_pred CC
Q 048801 618 WE 619 (1715)
Q Consensus 618 ~t 619 (1715)
..
T Consensus 314 ~~ 315 (582)
T 3o4h_A 314 GE 315 (582)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-17 Score=195.70 Aligned_cols=286 Identities=7% Similarity=-0.036 Sum_probs=195.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCC-CCeEEEEECCCCCEEE-EEeCCCeeEEEECCCCCceEEEeC
Q 048801 248 CAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHE-GDITDLAVSSNNTLVA-SASNDFVIRVWRLPDGLPISVLRG 325 (1715)
Q Consensus 248 ~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs-~~VtsLafSpDg~lLA-SGS~DGtIrVWDl~tg~~l~~L~g 325 (1715)
.+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45688899999999999999999999999988887543 2578999999998665 555689999999999988877763
Q ss_pred CC------CCeEEEEecCCCCcceEEEEecCC------------CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 326 HT------GAVTAIAFSPRPSAIYQLLSSSDD------------GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 326 H~------~~VtsLafSPdg~~~~~LaSgS~D------------GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
+. ..+.+++|+|+++ +|++++.+ +.|.+||+.+++....+..
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~---~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~----------------- 143 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGK---EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT----------------- 143 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE-----------------
T ss_pred ccccccccccccceEECCCCC---EEEEEcccccccccccccCCCeEEEEECCCccccceeee-----------------
Confidence 32 2378999999998 67777654 8999999987553221110
Q ss_pred CCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCC-C-----------------
Q 048801 388 GPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE-N----------------- 449 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~-~----------------- 449 (1715)
..+...+.+++|+|+|+ +++++ +.|.+||+.+++. +..+..+. .
T Consensus 144 ------~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (349)
T 1jmx_B 144 ------FPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKY---------TVALPLRNWNRKGYSAPDVLYFWPHQS 205 (349)
T ss_dssp ------EECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCE---------EEEECSTTCCCTTBCCCBCCCCCCCCC
T ss_pred ------ccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCce---------eccccccccCCccccCccceeeecCCC
Confidence 00122478899999999 55544 3499999987643 11221111 0
Q ss_pred ------CeeEEEEccCcccccccccccccccccccccCCc-ccCceEEEEcCCCeEEEEecCCCccCccccccccccccc
Q 048801 450 ------DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW-FCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLK 522 (1715)
Q Consensus 450 ------~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~-~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~ 522 (1715)
....+++++++... ...+ ....++.....++.+.+|++..
T Consensus 206 ~~~~~~~~~~~~~~~d~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 252 (349)
T 1jmx_B 206 PRHEFSMLYTIARFKDDKQD----------------PATADLLYGYLSVDLKTGKTHTQEFAD----------------- 252 (349)
T ss_dssp TTCEEEEEEEEEEC-----------------------CCCEEEEEEEEEETTTCCEEEEEEEE-----------------
T ss_pred cceeEEeeeeeeecCCCcCC----------------ccccccceeEEEEeccCCcEEeccccc-----------------
Confidence 11223333221000 0000 0001222333444555544321
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCc
Q 048801 523 VPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPR 601 (1715)
Q Consensus 523 ~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~ 601 (1715)
+...+..++|+| +|++|+++ ++.|.+||+.+++.+..+..+ ..+.+++|+|+ +.
T Consensus 253 ---------------------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~d-g~ 307 (349)
T 1jmx_B 253 ---------------------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKK-GD 307 (349)
T ss_dssp ---------------------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSS-SS
T ss_pred ---------------------CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCC-CC
Confidence 234578899999 99999988 889999999999988887643 34679999994 44
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEEcc
Q 048801 602 IAMSAGYDGRTIVWDIWEGTPIRIYEIG 629 (1715)
Q Consensus 602 lLaSgs~DGtI~VWDl~tgk~l~tl~~h 629 (1715)
.|++++.++.|.+||+.+++.+..+..+
T Consensus 308 ~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 308 KLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp CEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEEEecCCCeEEEEeccccceeeeeecC
Confidence 4455788899999999999998888744
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-17 Score=194.64 Aligned_cols=291 Identities=12% Similarity=0.131 Sum_probs=187.5
Q ss_pred CCcEEEEeC--CCCcEEE-EecCCCCCeEEEEECCCCCEEEEEeC---CCeeEEEECCCCC--ceEEEeCCCCCeEEEEe
Q 048801 264 DRLVKIWSM--ETAFCLA-SCRGHEGDITDLAVSSNNTLVASASN---DFVIRVWRLPDGL--PISVLRGHTGAVTAIAF 335 (1715)
Q Consensus 264 DGtIrIWDl--~tgk~l~-tL~gHs~~VtsLafSpDg~lLASGS~---DGtIrVWDl~tg~--~l~~L~gH~~~VtsLaf 335 (1715)
++.|.+|.+ .+++... ....+...+..++|+|||+ |++++. ++.|.+|++.++. .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 456777765 4565533 3344567788899999999 555544 6899999997765 34444557788999999
Q ss_pred cCCCCcceEEEEec-CCCcEEEEecCCCCCcceec-CCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEE
Q 048801 336 SPRPSAIYQLLSSS-DDGTCRIWDARYSQYSPRIY-LPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFV 413 (1715)
Q Consensus 336 SPdg~~~~~LaSgS-~DGtVrIWDl~tg~~l~~i~-~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~La 413 (1715)
+|++. +|++++ .++.|.+|++........+. .... ...+. .......+.+++|+|+|++++
T Consensus 94 spdg~---~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~------------~~~p~--~~~~~~~~~~~~~spdg~l~v 156 (347)
T 3hfq_A 94 DEARQ---LVYSANYHKGTAEVMKIAADGALTLTDTVQHS------------GHGPR--PEQDGSHIHYTDLTPDNRLAV 156 (347)
T ss_dssp ETTTT---EEEEEETTTTEEEEEEECTTSCEEEEEEEECC------------CCCSS--TTCSSCCEEEEEECTTSCEEE
T ss_pred CCCCC---EEEEEeCCCCEEEEEEeCCCCCeeecceeecC------------CCCCC--ccccCCCceEEEECCCCcEEE
Confidence 99998 566665 78999999996322111111 1000 00000 112344588999999999777
Q ss_pred EecCCCeEEEEeCC-CCCccCCCCCceeeeeecCC-CCCeeEEEEccCcccccccccccccccccccccCCcccCceEEE
Q 048801 414 TGSSDTFARVWSAC-KSSVEDSEQPIHELDVLSGH-ENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVT 491 (1715)
Q Consensus 414 tGs~DG~IrVWDl~-t~~~~~~~~~~~~l~~l~gH-~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaS 491 (1715)
++..++.|.+|++. ++. ...+..+..+ ...+..++|+|++ ...+++
T Consensus 157 ~~~~~~~v~~~~~~~~g~-------~~~~~~~~~~~g~~p~~~~~spdg-------------------------~~l~v~ 204 (347)
T 3hfq_A 157 IDLGSDKVYVYNVSDAGQ-------LSEQSVLTMEAGFGPRHLVFSPDG-------------------------QYAFLA 204 (347)
T ss_dssp EETTTTEEEEEEECTTSC-------EEEEEEEECCTTCCEEEEEECTTS-------------------------SEEEEE
T ss_pred EeCCCCEEEEEEECCCCc-------EEEeeeEEcCCCCCCceEEECCCC-------------------------CEEEEE
Confidence 77778999999997 322 1122222222 2367789999987 125566
Q ss_pred EcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE-EEecCCeEE
Q 048801 492 CSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL-AAIMDCRIC 570 (1715)
Q Consensus 492 gS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La-Tgs~DGtI~ 570 (1715)
+..++.|.+|++.... + .+.....+...+ . -......+..++|+|||++|+ ++..++.|.
T Consensus 205 ~~~~~~v~v~~~~~~~--g---~~~~~~~~~~~~---------~-----~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~ 265 (347)
T 3hfq_A 205 GELSSQIASLKYDTQT--G---AFTQLGIVKTIP---------A-----DYTAHNGAAAIRLSHDGHFLYVSNRGYNTLA 265 (347)
T ss_dssp ETTTTEEEEEEEETTT--T---EEEEEEEEESSC---------T-----TCCSCCEEEEEEECTTSCEEEEEEETTTEEE
T ss_pred eCCCCEEEEEEecCCC--C---ceEEeeeeeecC---------C-----CCCCCCcceeEEECCCCCEEEEEeCCCCEEE
Confidence 7788999999987411 0 000000000000 0 001124588999999999874 555689999
Q ss_pred EEECCC---CceEEEEecCCCCeEEEEEccCCCcEEEEEe-CCCcEEEE--ECCCCceEE
Q 048801 571 VWNAVD---GSLVHSLTGHSASSYVLDVHPFNPRIAMSAG-YDGRTIVW--DIWEGTPIR 624 (1715)
Q Consensus 571 IWDl~s---g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs-~DGtI~VW--Dl~tgk~l~ 624 (1715)
+|++.. .+.+..+..+...+.+++|+| ++++|++++ .++.|.+| |..+|+...
T Consensus 266 v~~~~~~g~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 266 VFAVTADGHLTLIQQISTEGDFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEECGGGCEEEEEEEECSSSCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEECCCCcEEEeEEEecCCCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 999972 355666777777789999999 555555555 56899999 555676553
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=219.74 Aligned_cols=269 Identities=12% Similarity=0.029 Sum_probs=197.8
Q ss_pred CCCeEEEEECCCCCEEEEEeC-CCeeEEEECCCCCceEEEeCCC-CCeEEEEecCCCCcceEEEEecC---CCcEEEEec
Q 048801 285 EGDITDLAVSSNNTLVASASN-DFVIRVWRLPDGLPISVLRGHT-GAVTAIAFSPRPSAIYQLLSSSD---DGTCRIWDA 359 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~-DGtIrVWDl~tg~~l~~L~gH~-~~VtsLafSPdg~~~~~LaSgS~---DGtVrIWDl 359 (1715)
..+|++++|+|||++||+++. ||++.||++.++.. ..+..|. ..+.+++|+|+ . .+++++. +....+|.+
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~---~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-R---VILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-E---EEEEEECSTTSCCEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-e---EEEEeccCCCCcceEEEEE
Confidence 557999999999999999887 99999999966554 4555555 68999999998 4 6666654 555677665
Q ss_pred CC--CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC--eEEEecCCCeEEEEeCCCCCccCCC
Q 048801 360 RY--SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT--VFVTGSSDTFARVWSACKSSVEDSE 435 (1715)
Q Consensus 360 ~t--g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~--~LatGs~DG~IrVWDl~t~~~~~~~ 435 (1715)
.. ......+. ....+...+|+|+|+ .+++++. +.+.+||+.+++.
T Consensus 96 ~~~~~g~~~~l~--------------------------~~~~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g~~---- 144 (582)
T 3o4h_A 96 NTSRPGEEQRLE--------------------------AVKPMRILSGVDTGEAVVFTGATE-DRVALYALDGGGL---- 144 (582)
T ss_dssp ETTSTTCCEECT--------------------------TSCSBEEEEEEECSSCEEEEEECS-SCEEEEEEETTEE----
T ss_pred eccCCCcccccc--------------------------CCCCceeeeeCCCCCeEEEEecCC-CCceEEEccCCcE----
Confidence 43 11111110 011234567888775 4444444 4455999976532
Q ss_pred CCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC----CeEEEEecCCCccCcc
Q 048801 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD----GSAIIWIPRSRRSHGK 511 (1715)
Q Consensus 436 ~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D----GsIrIWDl~t~~~~~~ 511 (1715)
..+..+.. .+++|+|+| +.|++++.+ +.|.+||+.+++
T Consensus 145 ------~~l~~~~~--~~~~~spDG--------------------------~~la~~~~~~~~~~~i~~~d~~~g~---- 186 (582)
T 3o4h_A 145 ------RELARLPG--FGFVSDIRG--------------------------DLIAGLGFFGGGRVSLFTSNLSSGG---- 186 (582)
T ss_dssp ------EEEEEESS--CEEEEEEET--------------------------TEEEEEEEEETTEEEEEEEETTTCC----
T ss_pred ------EEeecCCC--ceEEECCCC--------------------------CEEEEEEEcCCCCeEEEEEcCCCCC----
Confidence 12222222 789999987 788877776 789999987643
Q ss_pred cccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC--eEEEEECCCCceEEEEecCCCC
Q 048801 512 VGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC--RICVWNAVDGSLVHSLTGHSAS 589 (1715)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG--tI~IWDl~sg~~l~tL~gH~~~ 589 (1715)
...+..+...+..++|||||++|+++..++ .|++||+.+++.. .+.+|...
T Consensus 187 --------------------------~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~ 239 (582)
T 3o4h_A 187 --------------------------LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKD 239 (582)
T ss_dssp --------------------------CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSH
T ss_pred --------------------------ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcC
Confidence 223455667789999999999999888888 8999999999888 77888877
Q ss_pred eEEEE--------EccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCC---eEEEEE
Q 048801 590 SYVLD--------VHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG---QIYLLN 658 (1715)
Q Consensus 590 V~sLa--------fSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG---~I~IWd 658 (1715)
+..++ |+|++ .++++++.||+++||++ |+.+. ...+.+.+++|+ ||+++++++.+. .|++|+
T Consensus 240 ~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 240 FSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp HHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred hhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 77777 99955 99999999999999999 77655 234678899999 999999887764 577777
Q ss_pred CCC
Q 048801 659 TGQ 661 (1715)
Q Consensus 659 l~t 661 (1715)
+..
T Consensus 313 ~~~ 315 (582)
T 3o4h_A 313 SGE 315 (582)
T ss_dssp TCC
T ss_pred CCC
Confidence 654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-18 Score=226.55 Aligned_cols=315 Identities=11% Similarity=0.012 Sum_probs=208.3
Q ss_pred EEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCC---CeEEEEecCCCCcceEEEEecC---------CCcEEEE
Q 048801 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTG---AVTAIAFSPRPSAIYQLLSSSD---------DGTCRIW 357 (1715)
Q Consensus 290 sLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~---~VtsLafSPdg~~~~~LaSgS~---------DGtVrIW 357 (1715)
+++|+|||+++++ +.|++|++||+.+++....+.+|.. .|.+++|+|+++ +|++++. ++.|++|
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~---~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQ---FVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSS---EEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCC---eEEEEecCceeEEeecceEEEEE
Confidence 6899999966555 4699999999999998777765544 489999999998 6777765 7899999
Q ss_pred ecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCC
Q 048801 358 DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQP 437 (1715)
Q Consensus 358 Dl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~ 437 (1715)
|+.+++.+....+ ...+.+++|||||+.|+.+. ++.|++|++.++........
T Consensus 96 d~~~g~~~~~~~l--------------------------~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~ 148 (719)
T 1z68_A 96 DLSNGEFVRGNEL--------------------------PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFN 148 (719)
T ss_dssp ETTTTEECCSSCC--------------------------CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCC
T ss_pred ECCCCccccceec--------------------------CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecC
Confidence 9988764211100 12378899999999999885 78999999987643111000
Q ss_pred ceeeeeecCCCCC---------eeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC------------
Q 048801 438 IHELDVLSGHEND---------VNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG------------ 496 (1715)
Q Consensus 438 ~~~l~~l~gH~~~---------V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG------------ 496 (1715)
......+.++... ..+++|+|++ +.|++++.|.
T Consensus 149 ~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG--------------------------~~la~~~~d~~~~~~~~~~~~~ 202 (719)
T 1z68_A 149 GRENKIFNGIPDWVYEEEMLATKYALWWSPNG--------------------------KFLAYAEFNDTDIPVIAYSYYG 202 (719)
T ss_dssp CBTTTEEESSCCHHHHHHTTCSSCCEEECTTS--------------------------SEEEEEEEECTTSCEEEEEECC
T ss_pred CCcCCeEcccccceeeeecccCcccEEECCCC--------------------------CEEEEEEECCCCCceEEeeccC
Confidence 1111112233222 2589999997 5566555431
Q ss_pred ----------------------eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC
Q 048801 497 ----------------------SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS 554 (1715)
Q Consensus 497 ----------------------sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS 554 (1715)
.|.+||+.++..... ..+ .....+..+...+..++||
T Consensus 203 ~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~-------~~~--------------~~~~~~~~~~~~~~~~~~S 261 (719)
T 1z68_A 203 DEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGP-------QEV--------------PVPAMIASSDYYFSWLTWV 261 (719)
T ss_dssp SSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCC-------EEC--------------CCCHHHHTSCEEEEEEEES
T ss_pred CCCCccceeecCCCCCCCCCeeEEEEEECCCCCccce-------eEc--------------cCCccCCCCcceEEEeEEe
Confidence 677888776431100 000 0001234567789999999
Q ss_pred CCCCEEEEEecC----CeEEEEE----CCCCceEEEE----ecCCCCeE-----EEEEccCCCcEEE-EEeCCC--cEEE
Q 048801 555 LDNRFVLAAIMD----CRICVWN----AVDGSLVHSL----TGHSASSY-----VLDVHPFNPRIAM-SAGYDG--RTIV 614 (1715)
Q Consensus 555 PDG~~LaTgs~D----GtI~IWD----l~sg~~l~tL----~gH~~~V~-----sLafSP~dg~lLa-Sgs~DG--tI~V 614 (1715)
||++++++.... ..|++|| +.++++...+ .+|...+. .+.|+|++..+++ ++..+| .|.+
T Consensus 262 pD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~ 341 (719)
T 1z68_A 262 TDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHY 341 (719)
T ss_dssp SSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEE
T ss_pred CCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEE
Confidence 998877775433 2489999 8887766555 46777776 8899996555544 444555 5777
Q ss_pred EECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCC-----CeEEEEECCC--Cc----cccc-------cccceeecC
Q 048801 615 WDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDV-----GQIYLLNTGQ--GE----SQKD-------AKYDQFFLG 676 (1715)
Q Consensus 615 WDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~D-----G~I~IWdl~t--Ge----~~k~-------~~~~~~fs~ 676 (1715)
||+.+++ ...+..+...+..+.++ +|+.|+..+.+ +.+.||.+.. |. ++.. ......|++
T Consensus 342 ~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~ 419 (719)
T 1z68_A 342 IKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSD 419 (719)
T ss_dssp ESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECG
T ss_pred EECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECC
Confidence 7887776 44555555667788778 88888877654 7778887643 42 1111 123456888
Q ss_pred CCccEEEc
Q 048801 677 DYRPLIRD 684 (1715)
Q Consensus 677 D~r~L~~d 684 (1715)
|++.|++.
T Consensus 420 dg~~l~~~ 427 (719)
T 1z68_A 420 YAKYYALV 427 (719)
T ss_dssp GGSSEEEE
T ss_pred CCCEEEEE
Confidence 88887754
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-17 Score=193.36 Aligned_cols=308 Identities=9% Similarity=0.002 Sum_probs=196.2
Q ss_pred EEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCC-CCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCccee
Q 048801 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHT-GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRI 368 (1715)
Q Consensus 290 sLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~-~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i 368 (1715)
.+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|++.. .++++..++.|.+||+.+++....+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~--~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRT--AYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSE--EEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCE--EEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 45788899999999999999999999999888887543 25789999999872 4556678899999999988765544
Q ss_pred cCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC------------CeEEEEeCCCCCccCCCC
Q 048801 369 YLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD------------TFARVWSACKSSVEDSEQ 436 (1715)
Q Consensus 369 ~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D------------G~IrVWDl~t~~~~~~~~ 436 (1715)
...... ......+.+++|+|+|++|++++.+ +.|.+||+.+++.
T Consensus 82 ~~~~~~-------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----- 137 (349)
T 1jmx_B 82 NLSSVP-------------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE----- 137 (349)
T ss_dssp ESCCST-------------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-----
T ss_pred Eccccc-------------------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc-----
Confidence 321100 0012336789999999999988865 8999999976432
Q ss_pred CceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccc
Q 048801 437 PIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWT 516 (1715)
Q Consensus 437 ~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~ 516 (1715)
...+..+.. ...+.+++|+|++ . +++++ +.|.+||+.+++....+...
T Consensus 138 -~~~~~~~~~-~~~~~~~~~s~dg--------------------------~-l~~~~--~~i~~~d~~~~~~~~~~~~~- 185 (349)
T 1jmx_B 138 -AKPVRTFPM-PRQVYLMRAADDG--------------------------S-LYVAG--PDIYKMDVKTGKYTVALPLR- 185 (349)
T ss_dssp -BCCSEEEEC-CSSCCCEEECTTS--------------------------C-EEEES--SSEEEECTTTCCEEEEECST-
T ss_pred -cceeeeccC-CCcccceeECCCC--------------------------c-EEEcc--CcEEEEeCCCCceecccccc-
Confidence 112223332 3368889999987 4 44444 34999999876543221100
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccCCC----CCeeEEEeCCCCCEEEEEecC-CeEEEEECCCCceE-EEEecCCCCe
Q 048801 517 RAYHLKVPPPPLPPQPPRGGPRQRLLPTP----RGVNMIVWSLDNRFVLAAIMD-CRICVWNAVDGSLV-HSLTGHSASS 590 (1715)
Q Consensus 517 ~~~~l~~~~~~~~~~~~~g~~~~~l~~h~----~~VtslafSPDG~~LaTgs~D-GtI~IWDl~sg~~l-~tL~gH~~~V 590 (1715)
....+.. ........ -..... .....+++++++......... ..+..++..+++.. ..+..+...+
T Consensus 186 ------~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (349)
T 1jmx_B 186 ------NWNRKGY-SAPDVLYF-WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY 257 (349)
T ss_dssp ------TCCCTTB-CCCBCCCC-CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred ------ccCCccc-cCccceee-ecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcc
Confidence 0000000 00000000 000000 023456777665322111111 11223555554421 1223466678
Q ss_pred EEEEEcc-CCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccc
Q 048801 591 YVLDVHP-FNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKD 667 (1715)
Q Consensus 591 ~sLafSP-~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~ 667 (1715)
.+++|+| ++. +++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|||++|++++.++.|.+||+.+++.+..
T Consensus 258 ~~~~~sp~dg~-~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 258 FTGLRSPKDPN-QIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKN 331 (349)
T ss_dssp EEEEECSSCTT-EEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred eeeEecCCCCC-EEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeee
Confidence 9999999 554 55555 889999999999998888743 4577899999999999998899999999998876543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-17 Score=216.11 Aligned_cols=338 Identities=10% Similarity=0.005 Sum_probs=219.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCC-----eEEEEECCCCCEEEEEeCC---------Cee
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD-----ITDLAVSSNNTLVASASND---------FVI 309 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~-----VtsLafSpDg~lLASGS~D---------GtI 309 (1715)
....+++|+|||.+|+++ ||.|++||+.++++...+.+|... ...++|||||++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 345688999999999986 899999999999998888887643 2447899999999999876 566
Q ss_pred EEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCC
Q 048801 310 RVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 310 rVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
.+||+.+++.. .+..|.+.+..++|||+|+ .|+.+ .++.|++|++.++.... +........+
T Consensus 95 ~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~---~la~~-~~~~i~~~~~~~~~~~~-lt~~g~~~~~------------ 156 (740)
T 4a5s_A 95 DIYDLNKRQLI-TEERIPNNTQWVTWSPVGH---KLAYV-WNNDIYVKIEPNLPSYR-ITWTGKEDII------------ 156 (740)
T ss_dssp EEEETTTTEEC-CSSCCCTTEEEEEECSSTT---CEEEE-ETTEEEEESSTTSCCEE-CCSCCBTTTE------------
T ss_pred EEEECCCCcEE-EcccCCCcceeeEECCCCC---EEEEE-ECCeEEEEECCCCceEE-EcCCCCccce------------
Confidence 79999998754 4667888999999999998 56666 46899999998876432 2211110000
Q ss_pred CCCCCCCC---------cceeEEEEccCCCeEEEecCCC------------------------------------eEEEE
Q 048801 390 SSSNGLQS---------HQILCCAYNANGTVFVTGSSDT------------------------------------FARVW 424 (1715)
Q Consensus 390 ~~~~~~h~---------~~VtslafSpdG~~LatGs~DG------------------------------------~IrVW 424 (1715)
..++. .....++|||||+.||.++.|. .|++|
T Consensus 157 ---~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~ 233 (740)
T 4a5s_A 157 ---YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 233 (740)
T ss_dssp ---EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred ---ecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence 00011 1234689999999998875321 46677
Q ss_pred eCCC---CCccCCCCCceeeeeec------CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEE---
Q 048801 425 SACK---SSVEDSEQPIHELDVLS------GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTC--- 492 (1715)
Q Consensus 425 Dl~t---~~~~~~~~~~~~l~~l~------gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSg--- 492 (1715)
|+.+ +.. .. ...+. +|...+..++|+|++ +.++..
T Consensus 234 d~~~~~~~~~------~~-~~~l~~~~~~~~~~~~~~~~~wspdg--------------------------~~~~~~~~r 280 (740)
T 4a5s_A 234 NTDSLSSVTN------AT-SIQITAPASMLIGDHYLCDVTWATQE--------------------------RISLQWLRR 280 (740)
T ss_dssp ETTSCCSSSC------CC-EEEECCCHHHHTSCEEEEEEEEEETT--------------------------EEEEEEEES
T ss_pred ECCCCCCCCc------ce-EEEecCCccCCCCCeEEEEEEEeCCC--------------------------eEEEEEeCC
Confidence 7765 310 01 11121 377788999999987 444433
Q ss_pred -cCCCeEEEEecCCCc----cCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCC-----eeEEEeCCCCCEEE-
Q 048801 493 -SRDGSAIIWIPRSRR----SHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG-----VNMIVWSLDNRFVL- 561 (1715)
Q Consensus 493 -S~DGsIrIWDl~t~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~-----VtslafSPDG~~La- 561 (1715)
+.+..|.+||+.+++ +...... ....+... ...++|+|||+.|+
T Consensus 281 ~~~~~~i~~~d~~tg~~~~~~~~~~~l-------------------------~~~~~~~~v~~~~~~~p~fspDG~~l~~ 335 (740)
T 4a5s_A 281 IQNYSVMDICDYDESSGRWNCLVARQH-------------------------IEMSTTGWVGRFRPSEPHFTLDGNSFYK 335 (740)
T ss_dssp STTEEEEEEEEEETTTTEEEECGGGCE-------------------------EEECSSSCSSSSSCCCCEECTTSSEEEE
T ss_pred CCCEEEEEEEECCCCccccceeEEEEe-------------------------eeccCCceEccCcCCCceEcCCCCEEEE
Confidence 233479999998754 1100000 00112222 23578999999887
Q ss_pred EEec-C--CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeC----CCcEEEE--ECCCCceEEEEEc----
Q 048801 562 AAIM-D--CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGY----DGRTIVW--DIWEGTPIRIYEI---- 628 (1715)
Q Consensus 562 Tgs~-D--GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~----DGtI~VW--Dl~tgk~l~tl~~---- 628 (1715)
..+. + ..|++|++.+++.. .+......|..+.. ++++.+++++.. .+...|| ++..+.....+..
T Consensus 336 ~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~ 413 (740)
T 4a5s_A 336 IISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNP 413 (740)
T ss_dssp EEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTST
T ss_pred EEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCC
Confidence 6653 3 46899998776654 44444555665543 446666666655 2344455 5544333223331
Q ss_pred ccceEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCcc
Q 048801 629 GRFKLVDGKFSPDGTSIVLSDDV---GQIYLLNTGQGES 664 (1715)
Q Consensus 629 h~~~V~svafSPDG~~LAsgs~D---G~I~IWdl~tGe~ 664 (1715)
....+..+.|||||++++..... ..+.++++.+++.
T Consensus 414 ~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~ 452 (740)
T 4a5s_A 414 ERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKG 452 (740)
T ss_dssp TTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcE
Confidence 13567889999999988865443 4788889877754
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-17 Score=196.11 Aligned_cols=298 Identities=10% Similarity=0.003 Sum_probs=201.4
Q ss_pred EEEEeCCCCcEEEEecCCCCCeEE-----EEECCCCCEEEEEeC-CC--eeEEEECCCCCceEEEeCCCCCeEEEEecCC
Q 048801 267 VKIWSMETAFCLASCRGHEGDITD-----LAVSSNNTLVASASN-DF--VIRVWRLPDGLPISVLRGHTGAVTAIAFSPR 338 (1715)
Q Consensus 267 IrIWDl~tgk~l~tL~gHs~~Vts-----LafSpDg~lLASGS~-DG--tIrVWDl~tg~~l~~L~gH~~~VtsLafSPd 338 (1715)
...++..++..+..+..|...... ++|||||++|+.++. +| .|.+||+.+++......++...+..++|+|+
T Consensus 12 ~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd 91 (388)
T 3pe7_A 12 DTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD 91 (388)
T ss_dssp EEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT
T ss_pred eEEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC
Confidence 344577889899999988877766 899999999999887 66 4888899988877766667666667889999
Q ss_pred CCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeE--EEEccCCCeEEE--
Q 048801 339 PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILC--CAYNANGTVFVT-- 414 (1715)
Q Consensus 339 g~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vts--lafSpdG~~Lat-- 414 (1715)
++ .|+.++.++.|++||+.+++.......+ ...+.. ..++++|.+++.
T Consensus 92 g~---~l~~~~~~~~l~~~d~~~g~~~~~~~~~-------------------------~~~~~~~~~~~~~dg~~l~~~~ 143 (388)
T 3pe7_A 92 DD---ALFYVKDGRNLMRVDLATLEENVVYQVP-------------------------AEWVGYGTWVANSDCTKLVGIE 143 (388)
T ss_dssp SS---EEEEEETTTEEEEEETTTCCEEEEEECC-------------------------TTEEEEEEEEECTTSSEEEEEE
T ss_pred CC---EEEEEeCCCeEEEEECCCCcceeeeech-------------------------hhcccccceeECCCCCeecccc
Confidence 98 7888888899999999988654332211 112222 345899988874
Q ss_pred --------------------ecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEcc-Ccccccccccccccc
Q 048801 415 --------------------GSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSG-CAVASRSAMSDAFKE 473 (1715)
Q Consensus 415 --------------------Gs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafsp-dg~as~~~~~~~~~~ 473 (1715)
...++.|.+||+.+++ ...+..+...+..++|+| ++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~----------~~~l~~~~~~~~~~~~sp~dg------------- 200 (388)
T 3pe7_A 144 IRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE----------STVILQENQWLGHPIYRPYDD------------- 200 (388)
T ss_dssp EEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC----------EEEEEEESSCEEEEEEETTEE-------------
T ss_pred ccCcccccccccchhhhhhccCCcceEEEEECCCCc----------eEEeecCCccccccEECCCCC-------------
Confidence 2245789999998753 233445566789999999 87
Q ss_pred cccccccCCcccCceEEEEcCC------CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC--
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRD------GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP-- 545 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~D------GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~-- 545 (1715)
..|+.++.+ ..|.++++.++. ...+..+.
T Consensus 201 -------------~~l~~~~~~~~~~~~~~l~~~d~~~~~------------------------------~~~l~~~~~~ 237 (388)
T 3pe7_A 201 -------------STVAFCHEGPHDLVDARMWLINEDGTN------------------------------MRKVKTHAEG 237 (388)
T ss_dssp -------------EEEEEEECSCTTTSSCSEEEEETTSCC------------------------------CEESCCCCTT
T ss_pred -------------CEEEEEEecCCCCCcceEEEEeCCCCc------------------------------eEEeeeCCCC
Confidence 566655543 367777765422 11122222
Q ss_pred CCeeEEEeCCCCCEEEEEec-CC----eEEEEECCCCceEE--EEecCCCC---eEEEEEccCCCcEEEEE--------e
Q 048801 546 RGVNMIVWSLDNRFVLAAIM-DC----RICVWNAVDGSLVH--SLTGHSAS---SYVLDVHPFNPRIAMSA--------G 607 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~-DG----tI~IWDl~sg~~l~--tL~gH~~~---V~sLafSP~dg~lLaSg--------s 607 (1715)
..+..++|||||+.|+..+. ++ .|++||+.+++... .+.++... ...+.|+|++..++++. .
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 317 (388)
T 3pe7_A 238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIE 317 (388)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------C
T ss_pred cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccC
Confidence 24778899999998866543 22 49999999987533 33331100 11236899555555443 4
Q ss_pred CCCcEEEEECCCCceEEEEEcccc-----------eEEEEEEcCCCCEEEEEe-CCCeEEEEEC
Q 048801 608 YDGRTIVWDIWEGTPIRIYEIGRF-----------KLVDGKFSPDGTSIVLSD-DVGQIYLLNT 659 (1715)
Q Consensus 608 ~DGtI~VWDl~tgk~l~tl~~h~~-----------~V~svafSPDG~~LAsgs-~DG~I~IWdl 659 (1715)
.+..|++||+.+++.. .+..+.. .+..++|||||+.|+.++ .+|...||.+
T Consensus 318 ~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 318 NDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp CCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 5678999999887654 4444544 467889999999988665 4665555543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-16 Score=188.73 Aligned_cols=276 Identities=11% Similarity=0.054 Sum_probs=182.3
Q ss_pred CCeeEEEECC--CCCceE-EEeCCCCCeEEEEecCCCCcceEEEEe--cCCCcEEEEecCCCCCcceecCCCCCCCccCc
Q 048801 306 DFVIRVWRLP--DGLPIS-VLRGHTGAVTAIAFSPRPSAIYQLLSS--SDDGTCRIWDARYSQYSPRIYLPKPPDAITGK 380 (1715)
Q Consensus 306 DGtIrVWDl~--tg~~l~-~L~gH~~~VtsLafSPdg~~~~~LaSg--S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~ 380 (1715)
++.|.+|+++ +++... ....+...+..++|+|++. +++++ +.++.|.+|++.++........
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~---l~~~~~~~~~~~v~~~~~~~g~~~~~~~~---------- 81 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC---LYSVDKEDDEGGIAAWQIDGQTAHKLNTV---------- 81 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE---EEEEEEETTEEEEEEEEEETTEEEEEEEE----------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe---EEEEEecCCCceEEEEEecCCcEEEeeee----------
Confidence 4567777664 455433 2334567788999999986 33333 2378999999976653211100
Q ss_pred cCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-CCCeEEEEeCCCCCccCCCCCceeeeeecC---------CCCC
Q 048801 381 SNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS-SDTFARVWSACKSSVEDSEQPIHELDVLSG---------HEND 450 (1715)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs-~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g---------H~~~ 450 (1715)
..+...+..++|+|+|++|++++ .++.|.+|++.... ....+..+.. +...
T Consensus 82 -------------~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g------~~~~~~~~~~~~~~p~~~~~~~~ 142 (347)
T 3hfq_A 82 -------------VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADG------ALTLTDTVQHSGHGPRPEQDGSH 142 (347)
T ss_dssp -------------EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTS------CEEEEEEEECCCCCSSTTCSSCC
T ss_pred -------------ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCC------CeeecceeecCCCCCCccccCCC
Confidence 01234578899999999888777 68999999995321 0122222211 2235
Q ss_pred eeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecC-CCccCcccccccccccccCCCCCCC
Q 048801 451 VNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPR-SRRSHGKVGRWTRAYHLKVPPPPLP 529 (1715)
Q Consensus 451 V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~-t~~~~~~~~~~~~~~~l~~~~~~~~ 529 (1715)
+.+++|+|++ +.+++...++.|.+|++. ++... .. ..
T Consensus 143 ~~~~~~spdg--------------------------~l~v~~~~~~~v~~~~~~~~g~~~-~~------~~--------- 180 (347)
T 3hfq_A 143 IHYTDLTPDN--------------------------RLAVIDLGSDKVYVYNVSDAGQLS-EQ------SV--------- 180 (347)
T ss_dssp EEEEEECTTS--------------------------CEEEEETTTTEEEEEEECTTSCEE-EE------EE---------
T ss_pred ceEEEECCCC--------------------------cEEEEeCCCCEEEEEEECCCCcEE-Ee------ee---------
Confidence 8889999987 477777789999999997 32210 00 00
Q ss_pred CCCCCCCCcccccCCCCCeeEEEeCCCCCEEEE-EecCCeEEEEECCC--Cce--EEEEecCC------CCeEEEEEccC
Q 048801 530 PQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA-AIMDCRICVWNAVD--GSL--VHSLTGHS------ASSYVLDVHPF 598 (1715)
Q Consensus 530 ~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaT-gs~DGtI~IWDl~s--g~~--l~tL~gH~------~~V~sLafSP~ 598 (1715)
........+..++|+|||++|++ +..++.|.+|++.. ++. +..+.... ..+..++|+|+
T Consensus 181 ----------~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd 250 (347)
T 3hfq_A 181 ----------LTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHD 250 (347)
T ss_dssp ----------EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTT
T ss_pred ----------EEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCC
Confidence 00111235678999999997666 45688999999874 543 23333332 34889999995
Q ss_pred CCcEEEEEeCCCcEEEEECCC---CceEEEEEcccceEEEEEEcCCCCEEEEEeCC-CeEEEEE--CCCCccc
Q 048801 599 NPRIAMSAGYDGRTIVWDIWE---GTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDV-GQIYLLN--TGQGESQ 665 (1715)
Q Consensus 599 dg~lLaSgs~DGtI~VWDl~t---gk~l~tl~~h~~~V~svafSPDG~~LAsgs~D-G~I~IWd--l~tGe~~ 665 (1715)
+..+++++..++.|.+|++.. .+.+..+..+...+..++|+|||++|++++.+ +.|.+|+ ..+|+..
T Consensus 251 G~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 251 GHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp SCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 545557777899999999973 25556666555567899999999999888764 8999995 4556543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.75 E-value=9e-16 Score=183.98 Aligned_cols=318 Identities=11% Similarity=0.083 Sum_probs=195.2
Q ss_pred CCEEEEEe----CCCcEEEEeC--CCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC----CeeEEEECCC--CC--ce
Q 048801 255 GRFVITGS----DDRLVKIWSM--ETAFCLASCRGHEGDITDLAVSSNNTLVASASND----FVIRVWRLPD--GL--PI 320 (1715)
Q Consensus 255 G~~LaTGS----~DGtIrIWDl--~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D----GtIrVWDl~t--g~--~l 320 (1715)
..+++.|+ .++.|.+|.+ .+++.......+...+..++|+|||++|++++.+ +.|.+|++.. +. .+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 34555664 4678999976 4565433322277788899999999999999886 7999998865 43 23
Q ss_pred EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 321 SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 321 ~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
..+..+......+++ ++.. ++++...++.|.+|++.....+..+.... ...+ .. ......+...+
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~--l~~~~~~~~~v~~~~~~~~g~~~~~~~~~---~~~g-------~~-~~~~~~~~~~~ 157 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKN--IVTANYSGGSITVFPIGQDGALLPASDVI---EFKG-------SG-PDKERQTMPHL 157 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSE--EEEEETTTTEEEEEEBCTTSCBCSCSEEE---ECCC-------CC-SCTTTCSSCCE
T ss_pred eEeccCCCCcEEEEE--CCCE--EEEEECCCCEEEEEEeCCCCcCcccceeE---EccC-------CC-CCccccCCCcc
Confidence 334445667788888 5551 34444578999999997544322110000 0000 00 00011223447
Q ss_pred eEEEEccCCCeEEEe-cCCCeEEEEeCCCCCccCCCCCcee----eeeecCCCCCeeEEEEccCcccccccccccccccc
Q 048801 401 LCCAYNANGTVFVTG-SSDTFARVWSACKSSVEDSEQPIHE----LDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 401 tslafSpdG~~LatG-s~DG~IrVWDl~t~~~~~~~~~~~~----l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
.+++|+|+|++|+++ ..++.|.+|++.............. ......+...+..++|+|++
T Consensus 158 ~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg--------------- 222 (361)
T 3scy_A 158 HCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG--------------- 222 (361)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS---------------
T ss_pred eEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCC---------------
Confidence 899999999966554 4588999999875321000000000 11222344567899999987
Q ss_pred cccccCCcccCceEEE-EcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC
Q 048801 476 VPKFKNSWFCHDNIVT-CSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS 554 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaS-gS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS 554 (1715)
+++++ +..++.|.+|++.++.... ... ......+...+..++|+
T Consensus 223 -----------~~l~v~~~~~~~v~v~~~~~g~~~~-------~~~-----------------~~~~~~~~~~~~~i~~s 267 (361)
T 3scy_A 223 -----------KFAYLINEIGGTVIAFRYADGMLDE-------IQT-----------------VAADTVNAQGSGDIHLS 267 (361)
T ss_dssp -----------SEEEEEETTTCEEEEEEEETTEEEE-------EEE-----------------EESCSSCCCCEEEEEEC
T ss_pred -----------CEEEEEcCCCCeEEEEEecCCceEE-------eEE-----------------EecCCCCCCCcccEEEC
Confidence 45544 4479999999987543110 000 00111223346799999
Q ss_pred CCCCEEEEEecC--CeEEEEECC--CCc--eEEEEecCCCCeEEEEEccCCCcEEEEEe-CCCcEEEEE--CCCCceEEE
Q 048801 555 LDNRFVLAAIMD--CRICVWNAV--DGS--LVHSLTGHSASSYVLDVHPFNPRIAMSAG-YDGRTIVWD--IWEGTPIRI 625 (1715)
Q Consensus 555 PDG~~LaTgs~D--GtI~IWDl~--sg~--~l~tL~gH~~~V~sLafSP~dg~lLaSgs-~DGtI~VWD--l~tgk~l~t 625 (1715)
|||++|+++..+ +.|.||++. +++ .+..+.. ...+.+++|+| ++++|++++ .++.|.+|. ..+|+....
T Consensus 268 pdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 268 PDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITP-NGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp TTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECT-TSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred CCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECC-CCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 999999776654 899999985 455 4444554 55678999999 555555555 789999964 456766544
Q ss_pred EE-cccceEEEEEEc
Q 048801 626 YE-IGRFKLVDGKFS 639 (1715)
Q Consensus 626 l~-~h~~~V~svafS 639 (1715)
.. .+...+.|++|.
T Consensus 346 ~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 346 KKDIKVDKPVCLKFV 360 (361)
T ss_dssp SCCEECSSEEEEEEE
T ss_pred ceeeeCCCCeEEEEc
Confidence 31 123457888885
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-17 Score=196.62 Aligned_cols=297 Identities=10% Similarity=0.041 Sum_probs=202.2
Q ss_pred ccceeEEEEcCCCCCeEE-----EEEcCCCCEEEEEeC-CC--cEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEE
Q 048801 231 QKMQNIKKLRGHRDAVYC-----AIFDRSGRFVITGSD-DR--LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVAS 302 (1715)
Q Consensus 231 ~~~k~l~~L~GH~~~Vt~-----VafSpDG~~LaTGS~-DG--tIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLAS 302 (1715)
.+...+..|..|...+.. .+|+|||++|+.++. +| .|.+||+.+++......++...+.+++|+|||+.|+.
T Consensus 18 ~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~ 97 (388)
T 3pe7_A 18 STGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFY 97 (388)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEE
T ss_pred CCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEE
Confidence 345567778888877776 899999999999987 66 4888899999888777777766667899999999999
Q ss_pred EeCCCeeEEEECCCCCceEEEeCCCCCeEEEE--ecCCCCcceEEEE----------------------ecCCCcEEEEe
Q 048801 303 ASNDFVIRVWRLPDGLPISVLRGHTGAVTAIA--FSPRPSAIYQLLS----------------------SSDDGTCRIWD 358 (1715)
Q Consensus 303 GS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLa--fSPdg~~~~~LaS----------------------gS~DGtVrIWD 358 (1715)
++.++.|++||+.+++....+..+...+.... +++++. +++. ...+..|.+||
T Consensus 98 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 174 (388)
T 3pe7_A 98 VKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCT---KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD 174 (388)
T ss_dssp EETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSS---EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred EeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCC---eeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence 99999999999999988777776666565444 478876 4442 23457899999
Q ss_pred cCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCC------CeEEEEeCCCCCc
Q 048801 359 ARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSD------TFARVWSACKSSV 431 (1715)
Q Consensus 359 l~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~D------G~IrVWDl~t~~~ 431 (1715)
+.+++..... .+...+..++|+| +|+.|+.+..+ ..|.++++.++.
T Consensus 175 ~~~g~~~~l~--------------------------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~- 227 (388)
T 3pe7_A 175 LKTGESTVIL--------------------------QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN- 227 (388)
T ss_dssp TTTCCEEEEE--------------------------EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-
T ss_pred CCCCceEEee--------------------------cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-
Confidence 9887533221 1133478999999 99988876653 367788876532
Q ss_pred cCCCCCceeeeeecCCC--CCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEc-CC----CeEEEEecC
Q 048801 432 EDSEQPIHELDVLSGHE--NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RD----GSAIIWIPR 504 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~--~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~D----GsIrIWDl~ 504 (1715)
...+..+. ..+..++|+|++ +.|+..+ .+ +.|.+||+.
T Consensus 228 ---------~~~l~~~~~~~~~~~~~~spdg--------------------------~~l~~~~~~~~~~~~~l~~~d~~ 272 (388)
T 3pe7_A 228 ---------MRKVKTHAEGESCTHEFWVPDG--------------------------SALVYVSYLKGSPDRFIYSADPE 272 (388)
T ss_dssp ---------CEESCCCCTTEEEEEEEECTTS--------------------------SCEEEEEEETTCCCEEEEEECTT
T ss_pred ---------eEEeeeCCCCcccccceECCCC--------------------------CEEEEEecCCCCCcceEEEEecC
Confidence 22333333 257788999987 4454332 22 249999998
Q ss_pred CCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEE---------ecCCeEEEEECC
Q 048801 505 SRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAA---------IMDCRICVWNAV 575 (1715)
Q Consensus 505 t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTg---------s~DGtI~IWDl~ 575 (1715)
+++..... ... + ..... .....++|+|||+.|+.. ..+..|++||+.
T Consensus 273 ~g~~~~l~-~~~------------------~--~~~~~---~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 328 (388)
T 3pe7_A 273 TLENRQLT-SMP------------------A--CSHLM---SNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK 328 (388)
T ss_dssp TCCEEEEE-EEC------------------C--EEEEE---ECTTSSEEEEEECCC------------CCCCEEEEEETT
T ss_pred CCceEEEE-cCC------------------C--ceeee---ecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc
Confidence 75421100 000 0 00000 001123799999988864 446689999998
Q ss_pred CCceEEEEecCCC-----------CeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 576 DGSLVHSLTGHSA-----------SSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 576 sg~~l~tL~gH~~-----------~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
+++. ..+..|.. .+.+++|+|++..+++++..+|...||.+
T Consensus 329 ~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 329 NGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp TTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 8765 45655655 57889999965566666667787777754
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.8e-17 Score=195.17 Aligned_cols=310 Identities=9% Similarity=0.028 Sum_probs=205.3
Q ss_pred cceeEEEEcCCCCC-----eEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEE
Q 048801 232 KMQNIKKLRGHRDA-----VYCAIFDRSGRFVITGSDD---RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASA 303 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~-----Vt~VafSpDG~~LaTGS~D---GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASG 303 (1715)
+...+..|..+... +.+++|+|||++|+.+... ..|.+|++.+++......++...+..+.|+|||++|+.+
T Consensus 19 ~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 19 TQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEE
T ss_pred CCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEE
Confidence 44455666655444 7788999999998877543 468889999887655444333333347899999999999
Q ss_pred eCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCC
Q 048801 304 SNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383 (1715)
Q Consensus 304 S~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~ 383 (1715)
+.++.|++|++.+++....+..+.. |++++. .|+..+.++...+|..
T Consensus 99 ~~~~~l~~~d~~~~~~~~~~~~~~~------~~~~g~---~l~~~~~~~~~~~~~~------------------------ 145 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQVIYTVDEE------WKGYGT---WVANSDCTKLVGIEIL------------------------ 145 (396)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCTT------EEEEEE---EEECTTSSEEEEEEEE------------------------
T ss_pred EcCCcEEEEECCCCCcEEEEecccc------cCCCCC---EEEeccCCcccccccc------------------------
Confidence 9999999999998877666554443 666665 5666666665555531
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccCCCeEEEe-----cCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEcc
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNANGTVFVTG-----SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSG 458 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpdG~~LatG-----s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafsp 458 (1715)
.++|+|+++.++.+ ..+..|.+||+.+++. ..+..+...+..+.|+|
T Consensus 146 ------------------~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~----------~~~~~~~~~~~~~~~sp 197 (396)
T 3c5m_A 146 ------------------KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL----------EVIHQDTAWLGHPIYRP 197 (396)
T ss_dssp ------------------GGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE----------EEEEEESSCEEEEEEET
T ss_pred ------------------ccccCCCCcceeeeeeccCCCcceEEEEECCCCcE----------EeeccCCcccccceECC
Confidence 12366788777654 3567899999976532 22234566788999999
Q ss_pred -CcccccccccccccccccccccCCcccCceEEEEcCC------CeEEEEecCCCccCcccccccccccccCCCCCCCCC
Q 048801 459 -CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD------GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531 (1715)
Q Consensus 459 -dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D------GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~ 531 (1715)
++ ..|+.++.+ ..|.+|++.++.
T Consensus 198 ~dg--------------------------~~l~~~~~~~~~~~~~~l~~~d~~~~~------------------------ 227 (396)
T 3c5m_A 198 FDD--------------------------STVGFCHEGPHDLVDARMWLVNEDGSN------------------------ 227 (396)
T ss_dssp TEE--------------------------EEEEEEECSCSSSCSCCCEEEETTSCC------------------------
T ss_pred CCC--------------------------CEEEEEecCCCCCCCceEEEEECCCCc------------------------
Confidence 55 445554433 357777765422
Q ss_pred CCCCCCcccccCC--CCCeeEEEeCCCCCEEEEEecC-----CeEEEEECCCCceEEEEecCCCCeEEEEEcc-CCCcEE
Q 048801 532 PPRGGPRQRLLPT--PRGVNMIVWSLDNRFVLAAIMD-----CRICVWNAVDGSLVHSLTGHSASSYVLDVHP-FNPRIA 603 (1715)
Q Consensus 532 ~~~g~~~~~l~~h--~~~VtslafSPDG~~LaTgs~D-----GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP-~dg~lL 603 (1715)
...+..+ ...+..++|+|||++|+.++.+ +.|++||+.+++....... .. .. +.|+| ++. ++
T Consensus 228 ------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~-~l 297 (396)
T 3c5m_A 228 ------VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGS-LM 297 (396)
T ss_dssp ------CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSS-EE
T ss_pred ------eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCc-eE
Confidence 0111111 2247789999999988877654 4599999988876443322 22 33 88998 655 55
Q ss_pred EEEe----------------CCCcEEEEECCCCceEEEEEcccc-----------eEEEEEEcCCCCEEEEEeC-CC--e
Q 048801 604 MSAG----------------YDGRTIVWDIWEGTPIRIYEIGRF-----------KLVDGKFSPDGTSIVLSDD-VG--Q 653 (1715)
Q Consensus 604 aSgs----------------~DGtI~VWDl~tgk~l~tl~~h~~-----------~V~svafSPDG~~LAsgs~-DG--~ 653 (1715)
++++ .++.|++||+.+++... +..+.. .+..++|+|||+.|++++. +| .
T Consensus 298 ~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~ 376 (396)
T 3c5m_A 298 VGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK-LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPA 376 (396)
T ss_dssp EEEECCC----------CCCCCCEEEEEETTTTBCCE-EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCE
T ss_pred EEecCCcceeeccccccccCCCCcEEEEecccCceEE-ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCce
Confidence 5543 34789999998887543 433433 1456799999999887754 44 4
Q ss_pred EEEEECCCCc
Q 048801 654 IYLLNTGQGE 663 (1715)
Q Consensus 654 I~IWdl~tGe 663 (1715)
|+++++.+++
T Consensus 377 l~~~~~~~~~ 386 (396)
T 3c5m_A 377 IYIADVPESY 386 (396)
T ss_dssp EEEEECCTTC
T ss_pred EEEEEEcccc
Confidence 5555665553
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-15 Score=185.35 Aligned_cols=307 Identities=12% Similarity=0.094 Sum_probs=204.3
Q ss_pred CCCEEEEEe------CCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC----------CCeeEEEECCCC
Q 048801 254 SGRFVITGS------DDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN----------DFVIRVWRLPDG 317 (1715)
Q Consensus 254 DG~~LaTGS------~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~----------DGtIrVWDl~tg 317 (1715)
+++++++.. .|+.|.+||..+++.+.++..+..+ .++|+|||++|++++. +++|.+||+.++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 455555543 3789999999999999988877665 8999999999998863 678999999999
Q ss_pred CceEEEeCC------CCCeEEEEecCCCCcceEEEEec--CCCcEEEEecCCCCCcce-ecCCCCCCCccCccCCCCCCC
Q 048801 318 LPISVLRGH------TGAVTAIAFSPRPSAIYQLLSSS--DDGTCRIWDARYSQYSPR-IYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 318 ~~l~~L~gH------~~~VtsLafSPdg~~~~~LaSgS--~DGtVrIWDl~tg~~l~~-i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
+.+..+... ......++|+|+++ +|+++. .++.|.+||+.+++.+.. +..+
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~---~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~----------------- 151 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGK---FIVLQNASPATSIGIVDVAKGDYVEDVTAAA----------------- 151 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSS---EEEEEEESSSEEEEEEETTTTEEEEEEGGGT-----------------
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCC---EEEEECCCCCCeEEEEECCCCcEEEEEecCC-----------------
Confidence 988887632 34567899999998 666654 368999999998876544 3221
Q ss_pred CCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCC-CCccCCCCCceeeeeecCCCCCeeEEEEccCccccccc
Q 048801 389 PSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACK-SSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSA 466 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t-~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~ 466 (1715)
....+.+.|++ ..+++.+.||.+.+|++.. ++... .......+..+..++ .+.++++
T Consensus 152 ----------~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~---~~~~~~~~~~~~~~~-~~~~~~~------- 210 (361)
T 2oiz_A 152 ----------GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVAS---QSRSKQMFSVKDDPI-FIAPALD------- 210 (361)
T ss_dssp ----------TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEE---EEECCCCSCTTTSCB-CSCCEEC-------
T ss_pred ----------CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEee---eccccceEcCCCCce-EEEeccc-------
Confidence 11235567765 5677788889998888754 21100 000000111111111 1111121
Q ss_pred ccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC
Q 048801 467 MSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR 546 (1715)
Q Consensus 467 ~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~ 546 (1715)
...++..+.++.|.++|+....... ...|. +. ............
T Consensus 211 -------------------g~~~~~~~~~~~v~v~d~~~~~~~~-~~~~~----~~------------~~~~~~~~~~p~ 254 (361)
T 2oiz_A 211 -------------------KDKAHFVSYYGNVYSADFSGDEVKV-DGPWS----LL------------NDEDKAKNWVPG 254 (361)
T ss_dssp -------------------SSEEEEEBTTSEEEEEECSSSSCEE-EEEEE----SC------------CHHHHHTTCEEC
T ss_pred -------------------CCEEEEEeCCCeEEEEEecCCCcee-ccccc----cc------------CccccccccccC
Confidence 2456666788999999987533110 00000 00 000000000012
Q ss_pred CeeEEEeCCCCCEEEEEec-----------CCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 048801 547 GVNMIVWSLDNRFVLAAIM-----------DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 547 ~VtslafSPDG~~LaTgs~-----------DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VW 615 (1715)
+...++|+|+++.++++.. .+.|.+||+.+++.+.++..+. +.+|+|+| ++++|++++. +.|.||
T Consensus 255 g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~-~~v~v~ 330 (361)
T 2oiz_A 255 GYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG-GNVNVY 330 (361)
T ss_dssp CSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-SCEEEE
T ss_pred CeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-CeEEEE
Confidence 2234789999888877654 3589999999999999998887 89999999 5567777776 999999
Q ss_pred ECCCC--ceEEEEEcccceEEEEEEcCCCC
Q 048801 616 DIWEG--TPIRIYEIGRFKLVDGKFSPDGT 643 (1715)
Q Consensus 616 Dl~tg--k~l~tl~~h~~~V~svafSPDG~ 643 (1715)
|..++ +.+..+.........++|+|||+
T Consensus 331 D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 331 DISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred ECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999 99998854555677899999986
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-15 Score=180.87 Aligned_cols=297 Identities=10% Similarity=0.105 Sum_probs=184.7
Q ss_pred CCCCEEEEEeC----CCeeEEEEC--CCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCC----CcEEEEecCC--C
Q 048801 295 SNNTLVASASN----DFVIRVWRL--PDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD----GTCRIWDARY--S 362 (1715)
Q Consensus 295 pDg~lLASGS~----DGtIrVWDl--~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D----GtVrIWDl~t--g 362 (1715)
+...+++.|+. ++.|.+|.+ .+++.......+...+..++|+|+++ +|++++.+ +.|.+|++.. +
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~---~l~~~~~~~~~~~~v~~~~~~~~~g 87 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGK---FVYSVNEFSKDQAAVSAFAFDKEKG 87 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSS---EEEEEECCSSTTCEEEEEEEETTTT
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCC---EEEEEEccCCCCCcEEEEEEeCCCC
Confidence 34456666643 568999976 45654333222677888999999997 67777765 8999998865 3
Q ss_pred CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-CCCeEEEEeCCCCCccCCCCCceee
Q 048801 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS-SDTFARVWSACKSSVEDSEQPIHEL 441 (1715)
Q Consensus 363 ~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs-~DG~IrVWDl~t~~~~~~~~~~~~l 441 (1715)
........ ..+......+++ +|++|++++ .++.|.+|++........ ....
T Consensus 88 ~~~~~~~~-----------------------~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~---~~~~ 139 (361)
T 3scy_A 88 TLHLLNTQ-----------------------KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLP---ASDV 139 (361)
T ss_dssp EEEEEEEE-----------------------ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCS---CSEE
T ss_pred cEEEeeEe-----------------------ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcc---ccee
Confidence 22111100 011234566777 777666665 688999999975321100 0000
Q ss_pred eee--------cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc
Q 048801 442 DVL--------SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG 513 (1715)
Q Consensus 442 ~~l--------~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~ 513 (1715)
... ..+...+.+++|+|++ ...++++..++.|.+|++..........
T Consensus 140 ~~~~g~~~~~~~~~~~~~~~~~~spdg-------------------------~~l~~~~~~~~~v~v~~~~~~~~~~~~~ 194 (361)
T 3scy_A 140 IEFKGSGPDKERQTMPHLHCVRITPDG-------------------------KYLLADDLGTDQIHKFNINPNANADNKE 194 (361)
T ss_dssp EECCCCCSCTTTCSSCCEEEEEECTTS-------------------------SEEEEEETTTTEEEEEEECTTCCTTTCC
T ss_pred EEccCCCCCccccCCCcceEEEECCCC-------------------------CEEEEEeCCCCEEEEEEEcCCCCccccc
Confidence 011 1123346889999987 1245566668999999887532100000
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCce--EEEEe---cCC
Q 048801 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSL--VHSLT---GHS 587 (1715)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~~--l~tL~---gH~ 587 (1715)
..... +............+..++|+|||++|++++ .++.|.+|++.++++ +..+. .+.
T Consensus 195 ~l~~~----------------~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~ 258 (361)
T 3scy_A 195 KFLTK----------------GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNA 258 (361)
T ss_dssp CCEEE----------------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCC
T ss_pred ceeec----------------ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCC
Confidence 00000 000011122344578899999999888777 689999999987754 33332 334
Q ss_pred CCeEEEEEccCCCcEE-EEEeC-CCcEEEEECC--CCc--eEEEEEcccceEEEEEEcCCCCEEEEEe-CCCeEEEEEC-
Q 048801 588 ASSYVLDVHPFNPRIA-MSAGY-DGRTIVWDIW--EGT--PIRIYEIGRFKLVDGKFSPDGTSIVLSD-DVGQIYLLNT- 659 (1715)
Q Consensus 588 ~~V~sLafSP~dg~lL-aSgs~-DGtI~VWDl~--tgk--~l~tl~~h~~~V~svafSPDG~~LAsgs-~DG~I~IWdl- 659 (1715)
.....++|+| ++++| ++... ++.|.||++. +++ .+..+.. ...+.+++|+|||++|++++ .++.|.+|.+
T Consensus 259 ~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 259 QGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp CCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 5578999999 55555 44445 5899999995 455 4455554 44677899999999999887 6789999654
Q ss_pred -CCCccc
Q 048801 660 -GQGESQ 665 (1715)
Q Consensus 660 -~tGe~~ 665 (1715)
.+|+..
T Consensus 337 ~~~g~~~ 343 (361)
T 3scy_A 337 QATGLLT 343 (361)
T ss_dssp TTTCCEE
T ss_pred CCCCcEe
Confidence 466543
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-15 Score=196.90 Aligned_cols=305 Identities=10% Similarity=-0.025 Sum_probs=201.9
Q ss_pred EEcCCCCCeEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCcEEEEecCCCCCeE---------EEEEC--CCCCE-EEEE
Q 048801 238 KLRGHRDAVYCAIFDRSGRFVITG--SDDRLVKIWSMETAFCLASCRGHEGDIT---------DLAVS--SNNTL-VASA 303 (1715)
Q Consensus 238 ~L~GH~~~Vt~VafSpDG~~LaTG--S~DGtIrIWDl~tgk~l~tL~gHs~~Vt---------sLafS--pDg~l-LASG 303 (1715)
.+.+|...|..++|++++-++++. +.++...||....+.....+..|...+. ...|+ |||++ |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 366899999999999887777777 5588999999655556677877777766 66665 99998 7766
Q ss_pred eC-CCeeEEEECC-CC-CceEEEeC-----CCCCeEEEEecCCCCcceEEEEecCC----------CcEEEEecCC----
Q 048801 304 SN-DFVIRVWRLP-DG-LPISVLRG-----HTGAVTAIAFSPRPSAIYQLLSSSDD----------GTCRIWDARY---- 361 (1715)
Q Consensus 304 S~-DGtIrVWDl~-tg-~~l~~L~g-----H~~~VtsLafSPdg~~~~~LaSgS~D----------GtVrIWDl~t---- 361 (1715)
+. +..|.+|++. ++ .....+.. |...+.+++|+|+++ .|++++.+ ..|++||+.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~---~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 174 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERG---EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA 174 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTT---EEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCC---EEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence 54 4566666665 12 44566665 677889999999998 67777766 5899999876
Q ss_pred --CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC--------CeEEEEeCC-CCC
Q 048801 362 --SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD--------TFARVWSAC-KSS 430 (1715)
Q Consensus 362 --g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D--------G~IrVWDl~-t~~ 430 (1715)
+.. ..+.. .+...+..++|+|||++|+.++.+ ..|++||+. ++.
T Consensus 175 ~~~~~-~~l~~------------------------~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 175 DRSAV-RELSD------------------------DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR 229 (662)
T ss_dssp CGGGS-EESSC------------------------SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred cCCce-eEEEe------------------------cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence 332 11100 113457788999999999877754 479999997 331
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC--eEEEEecCCCcc
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG--SAIIWIPRSRRS 508 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG--sIrIWDl~t~~~ 508 (1715)
. ........+|...+..+.|+|++ ++++++..+| .|.+||+.+++.
T Consensus 230 ~------~~~~~l~~~~~~~~~~~~~spdg--------------------------~l~~~~~~~~~~~l~~~~~~~~~~ 277 (662)
T 3azo_A 230 F------ADTRTLLGGPEEAIAQAEWAPDG--------------------------SLIVATDRTGWWNLHRVDPATGAA 277 (662)
T ss_dssp E------EEEEEEEEETTBCEEEEEECTTS--------------------------CEEEEECTTSSCEEEEECTTTCCE
T ss_pred c------cccEEeCCCCCceEcceEECCCC--------------------------eEEEEECCCCCeEEEEEECCCCce
Confidence 1 12223334557789999999987 5778888888 555666544321
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEE--ECCCCceEEEEecC
Q 048801 509 HGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVW--NAVDGSLVHSLTGH 586 (1715)
Q Consensus 509 ~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IW--Dl~sg~~l~tL~gH 586 (1715)
...... ........-...+..++|++++++++++.. +.++|| |+.+++ +..+..|
T Consensus 278 ~~l~~~---------------------~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~ 334 (662)
T 3azo_A 278 TQLCRR---------------------EEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGP 334 (662)
T ss_dssp EESSCC---------------------SSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSS
T ss_pred eecccc---------------------cccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCC
Confidence 110000 000000000112456899999999999998 999999 655554 6788888
Q ss_pred CCCeEEE-EEccCCCcEEE-EEeCCC--cEEEEECCCCceEEEEE
Q 048801 587 SASSYVL-DVHPFNPRIAM-SAGYDG--RTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 587 ~~~V~sL-afSP~dg~lLa-Sgs~DG--tI~VWDl~tgk~l~tl~ 627 (1715)
...+..+ +++ +..+++ +++.+. .|.+||+.+++......
T Consensus 335 ~~~~~~~~s~~--~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~ 377 (662)
T 3azo_A 335 WTEWAATLTVS--GTRAVGVAASPRTAYEVVELDTVTGRARTIGA 377 (662)
T ss_dssp CCEEEEEEEEE--TTEEEEEEEETTEEEEEEEEETTTCCEEEEES
T ss_pred CCeEEEEEecC--CCEEEEEEcCCCCCCEEEEEECCCCceEEeec
Confidence 8778777 443 444444 445454 46666777777554433
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-15 Score=186.33 Aligned_cols=167 Identities=14% Similarity=0.100 Sum_probs=133.7
Q ss_pred CCCCCeEEEEEcCCCCEEE----EEeCCCcEEEEeCCCC--------c---EEEEecCCCCCeEEEEECCC-CCEEEEEe
Q 048801 241 GHRDAVYCAIFDRSGRFVI----TGSDDRLVKIWSMETA--------F---CLASCRGHEGDITDLAVSSN-NTLVASAS 304 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~La----TGS~DGtIrIWDl~tg--------k---~l~tL~gHs~~VtsLafSpD-g~lLASGS 304 (1715)
.|.+.|++++|+|+|++|| +|+.|+.|+|||+.++ + .+..+.+|...|++++|+|+ +.+||+|+
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 4678899999999999999 7889999999998765 2 25667789999999999998 89999999
Q ss_pred CCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 305 NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 305 ~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
.||+|+|||+.++..+....+|...|++++|+|++. +|++|+.||+|++||++ +.....+..+.
T Consensus 170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~---~lasgs~dg~v~iwd~~-~~~~~~~~~~~------------ 233 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGK---QLAVGKQNGTVVQYLPT-LQEKKVIPCPP------------ 233 (434)
T ss_dssp TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSS---CEEEEETTSCEEEECTT-CCEEEEECCCT------------
T ss_pred CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCC---EEEEEcCCCcEEEEccC-CcccccccCCc------------
Confidence 999999999999877777778999999999999987 89999999999999997 44333221110
Q ss_pred CCCCCCCCCCCCCcceeEEEEccCCCeEEEec-CCC------eEEEEeCCCC
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNANGTVFVTGS-SDT------FARVWSACKS 429 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSpdG~~LatGs-~DG------~IrVWDl~t~ 429 (1715)
.....|...|.+++|++++.++++.+ .+| .+++|++.+.
T Consensus 234 ------~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 234 ------FYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp ------TCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ------ccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 00112345799999999988775433 333 3899999753
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-15 Score=200.28 Aligned_cols=313 Identities=10% Similarity=0.015 Sum_probs=197.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCC-----eEEEEecCCCCcceEEEEecCC---------
Q 048801 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGA-----VTAIAFSPRPSAIYQLLSSSDD--------- 351 (1715)
Q Consensus 286 ~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~-----VtsLafSPdg~~~~~LaSgS~D--------- 351 (1715)
....+++|+|||.+|+++ |++|++||+.++++...+.+|... ...++||||++ +|+.++.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~---~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ---FILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSS---EEEEEEEEEECSSSCEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCC---EEEEEECCeeeEEEccc
Confidence 346689999999999987 899999999999988888877643 23478899998 77777765
Q ss_pred CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCc
Q 048801 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 352 GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~ 431 (1715)
+.+.+||+.+++.... ..+...+..++|||||+.||.+. ++.|++|++.++..
T Consensus 92 ~~~~~~d~~~~~~~~l--------------------------~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 92 ASYDIYDLNKRQLITE--------------------------ERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPS 144 (740)
T ss_dssp EEEEEEETTTTEECCS--------------------------SCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCC
T ss_pred eEEEEEECCCCcEEEc--------------------------ccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCce
Confidence 5677999998764321 11234589999999999999884 68999999987643
Q ss_pred cCCCCCceeeeeecCCC---------CCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC------
Q 048801 432 EDSEQPIHELDVLSGHE---------NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG------ 496 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~---------~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG------ 496 (1715)
............+.++. +....+.|+|+| +.|+.++.|.
T Consensus 145 ~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg--------------------------~~la~~~~d~~~v~~~ 198 (740)
T 4a5s_A 145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG--------------------------TFLAYAQFNDTEVPLI 198 (740)
T ss_dssp EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS--------------------------SEEEEEEEECTTCCEE
T ss_pred EEEcCCCCccceecCcccccccchhcCCCcceEECCCC--------------------------CEEEEEEEcccCCceE
Confidence 11111111111122222 122458899997 3344333222
Q ss_pred ------------------------------eEEEEecCC---CccCcccccccccccccCCCCCCCCCCCCCCCccccc-
Q 048801 497 ------------------------------SAIIWIPRS---RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLL- 542 (1715)
Q Consensus 497 ------------------------------sIrIWDl~t---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~- 542 (1715)
.|.+||+.+ +... ....+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~---------------------------~~~~l~~ 251 (740)
T 4a5s_A 199 EYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA---------------------------TSIQITA 251 (740)
T ss_dssp EEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC---------------------------CEEEECC
T ss_pred EEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc---------------------------eEEEecC
Confidence 344455543 2100 111111
Q ss_pred -----CCCCCeeEEEeCCCCCEEEEEec----CCeEEEEECCCCc----eE--EEE--ecCCCCeE-----EEEEccCCC
Q 048801 543 -----PTPRGVNMIVWSLDNRFVLAAIM----DCRICVWNAVDGS----LV--HSL--TGHSASSY-----VLDVHPFNP 600 (1715)
Q Consensus 543 -----~h~~~VtslafSPDG~~LaTgs~----DGtI~IWDl~sg~----~l--~tL--~gH~~~V~-----sLafSP~dg 600 (1715)
++...+..++|||||++++.... +..|++||+.+|+ +. ..+ .+|...|. .++|+|++.
T Consensus 252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~ 331 (740)
T 4a5s_A 252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGN 331 (740)
T ss_dssp CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCC
Confidence 35667899999999997776543 3379999999887 22 222 45665554 789999554
Q ss_pred cEEEEEe-CCC--cEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCC-----C--eEEEEECCCCcc---cc-
Q 048801 601 RIAMSAG-YDG--RTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDV-----G--QIYLLNTGQGES---QK- 666 (1715)
Q Consensus 601 ~lLaSgs-~DG--tI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~D-----G--~I~IWdl~tGe~---~k- 666 (1715)
.+++..+ .+| .|++||+.++++.... .+...|..+. ++|++.|+..+.. + .|+..++..+.. +.
T Consensus 332 ~l~~~~s~~~G~~~l~~~~~~~~~~~~lT-~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~ 409 (740)
T 4a5s_A 332 SFYKIISNEEGYRHICYFQIDKKDCTFIT-KGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSC 409 (740)
T ss_dssp EEEEEEECTTSCEEEEEEETTCSSCEESC-CSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESST
T ss_pred EEEEEEEcCCCceEEEEEECCCCceEecc-cCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeecc
Confidence 4442554 444 6888898777665433 3455565543 2457766654433 3 566666655432 11
Q ss_pred ------ccccceeecCCCccEEEcC
Q 048801 667 ------DAKYDQFFLGDYRPLIRDS 685 (1715)
Q Consensus 667 ------~~~~~~~fs~D~r~L~~d~ 685 (1715)
.......|++|++.+++..
T Consensus 410 ~~~~~~~~~~~~~~S~dg~~~~~~~ 434 (740)
T 4a5s_A 410 ELNPERCQYYSVSFSKEAKYYQLRC 434 (740)
T ss_dssp TTSTTTBCBEEEEECTTSSEEEEEE
T ss_pred ccCCCCCceEEEEECCCCCEEEEEe
Confidence 1223457888988776553
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-15 Score=187.80 Aligned_cols=217 Identities=8% Similarity=0.036 Sum_probs=158.4
Q ss_pred ceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCC--CCCcee----eeeecCCCCCeeEEEEccCccccccccccccc
Q 048801 399 QILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDS--EQPIHE----LDVLSGHENDVNYVQFSGCAVASRSAMSDAFK 472 (1715)
Q Consensus 399 ~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~--~~~~~~----l~~l~gH~~~V~sLafspdg~as~~~~~~~~~ 472 (1715)
.+..+++++++.++++|+.++ ++||+......... ...... ......+...|.+++|+|++
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg------------ 104 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN------------ 104 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS------------
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC------------
Confidence 478899999999999999888 88887642110000 000000 01112356689999999987
Q ss_pred ccccccccCCcccCceEE----EEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCe
Q 048801 473 EENVPKFKNSWFCHDNIV----TCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548 (1715)
Q Consensus 473 ~~~~~~~~~s~~~~~~La----SgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V 548 (1715)
.+|+ +++.|+.|+|||+.+.... .... .........+.+|...|
T Consensus 105 --------------~~lav~~~sgs~d~~v~iwd~~~~~~~----~~~~--------------~~~~~~~~~~~~h~~~V 152 (434)
T 2oit_A 105 --------------LTLSACMMSSEYGSIIAFFDVRTFSNE----AKQQ--------------KRPFAYHKLLKDAGGMV 152 (434)
T ss_dssp --------------CEEEEEEEETTTEEEEEEEEHHHHHCT----TCSS--------------CCCSEEEECCCSGGGSE
T ss_pred --------------CEEEEEEeccCCCceEEEEEccccccC----CcCC--------------cceeeeeeccCCCCCce
Confidence 6777 7889999999998753100 0000 00000123345678899
Q ss_pred eEEEeCCC-CCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE
Q 048801 549 NMIVWSLD-NRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 549 tslafSPD-G~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~ 627 (1715)
.+++|+|+ +.+|++++.||+|+|||+.++..+....+|...|++++|+| ++.+|++|+.||+|++||+. ++....+.
T Consensus 153 ~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~ 230 (434)
T 2oit_A 153 IDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIP 230 (434)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEEC
T ss_pred EEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-Cccccccc
Confidence 99999998 88999999999999999999988777888999999999999 68889999999999999997 67666665
Q ss_pred ccc-------ceEEEEEEcCCCCEEEEE-eCCC------eEEEEECCCC
Q 048801 628 IGR-------FKLVDGKFSPDGTSIVLS-DDVG------QIYLLNTGQG 662 (1715)
Q Consensus 628 ~h~-------~~V~svafSPDG~~LAsg-s~DG------~I~IWdl~tG 662 (1715)
.+. ..|.+++|++++.++++. ..+| .+++|++...
T Consensus 231 ~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 231 CPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 432 379999999999888654 3443 3899999764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-14 Score=173.04 Aligned_cols=297 Identities=10% Similarity=0.050 Sum_probs=196.8
Q ss_pred CCCEEEEEe------CCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec----------CCCcEEEEec
Q 048801 296 NNTLVASAS------NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS----------DDGTCRIWDA 359 (1715)
Q Consensus 296 Dg~lLASGS------~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS----------~DGtVrIWDl 359 (1715)
+++++++.. .|+.|.+||..+++.+..+..+..+ .++|+|+++ +|+++. .+++|.+||+
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~---~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGK---KIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSS---EEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCC---EEEEEEecccccccCCCCCEEEEEEC
Confidence 566666654 3679999999999998888876555 999999998 555554 3678999999
Q ss_pred CCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC--CCeEEEEeCCCCCccCCCCC
Q 048801 360 RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS--DTFARVWSACKSSVEDSEQP 437 (1715)
Q Consensus 360 ~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~--DG~IrVWDl~t~~~~~~~~~ 437 (1715)
.+++.+..+...... ..+......++|+|+|++|+++.. ++.|.+||+.+++
T Consensus 89 ~t~~~~~~i~~~~~~-------------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~------- 142 (361)
T 2oiz_A 89 DKLTFEKEISLPPKR-------------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD------- 142 (361)
T ss_dssp TTCCEEEEEEECTTB-------------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE-------
T ss_pred cCCcEEEEEEcCccc-------------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc-------
Confidence 888776665432110 001233567999999999988863 6899999998753
Q ss_pred ceeeee-ecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC-CccCcccccc
Q 048801 438 IHELDV-LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS-RRSHGKVGRW 515 (1715)
Q Consensus 438 ~~~l~~-l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t-~~~~~~~~~~ 515 (1715)
.+.. +.. . ....+.+.|.+ ...+++.+.||.+.+|++.. ++.....
T Consensus 143 --~~~~~i~~-~-~~~~v~~~p~~-------------------------~~~~~~~~~dg~~~~v~~~~~g~~~~~~--- 190 (361)
T 2oiz_A 143 --YVEDVTAA-A-GCWSVIPQPNR-------------------------PRSFMTICGDGGLLTINLGEDGKVASQS--- 190 (361)
T ss_dssp --EEEEEGGG-T-TEEEEEECTTS-------------------------SSEEEEEETTSSEEEEEECTTSSEEEEE---
T ss_pred --EEEEEecC-C-CcceeEEcCCC-------------------------CeeEEEECCCCcEEEEEECCCCcEeeec---
Confidence 2333 221 1 11224556654 35788889999999998764 2211000
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce--EEEEec------CC
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL--VHSLTG------HS 587 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~--l~tL~g------H~ 587 (1715)
... ..+...... ..+.+++++..++..+.++.|.++|+..... +..+.- +.
T Consensus 191 -~~~-------------------~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~ 249 (361)
T 2oiz_A 191 -RSK-------------------QMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAK 249 (361)
T ss_dssp -ECC-------------------CCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHT
T ss_pred -ccc-------------------ceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccc
Confidence 000 000001111 1233467777777788899999999875542 222211 00
Q ss_pred ----CCeEEEEEccCCCcEEEEEeC----------CCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCe
Q 048801 588 ----ASSYVLDVHPFNPRIAMSAGY----------DGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQ 653 (1715)
Q Consensus 588 ----~~V~sLafSP~dg~lLaSgs~----------DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~ 653 (1715)
.....++|+|++++++++... .+.|.+||+.+++.+.++..+. +..++|+|||++|++++. +.
T Consensus 250 ~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~ 326 (361)
T 2oiz_A 250 NWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GN 326 (361)
T ss_dssp TCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SC
T ss_pred ccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-Ce
Confidence 111237899966666665541 3489999999999999999776 899999999999998887 99
Q ss_pred EEEEECCCC--cccccc------ccceeecCCCc
Q 048801 654 IYLLNTGQG--ESQKDA------KYDQFFLGDYR 679 (1715)
Q Consensus 654 I~IWdl~tG--e~~k~~------~~~~~fs~D~r 679 (1715)
|.|||+.++ +.+... +....|+|||+
T Consensus 327 v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 327 VNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 999999999 765432 23345566654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-14 Score=170.61 Aligned_cols=289 Identities=9% Similarity=0.067 Sum_probs=182.6
Q ss_pred EEEEEeCC--CcEEEEeC--CCCcEEE--Eec-CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC-CCCceEEEeCC-C
Q 048801 257 FVITGSDD--RLVKIWSM--ETAFCLA--SCR-GHEGDITDLAVSSNNTLVASASNDFVIRVWRLP-DGLPISVLRGH-T 327 (1715)
Q Consensus 257 ~LaTGS~D--GtIrIWDl--~tgk~l~--tL~-gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~-tg~~l~~L~gH-~ 327 (1715)
+|+.|+.. +.|.+|++ .++++.. ... ++...+..++|+|+|++|++++.+ .|.+|++. +++........ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 35556542 56877765 5665432 221 244568899999999999999888 99999997 77665433211 1
Q ss_pred CCeEEEEecCCCCcceEEEEec-------------CCCcEEEEecCC-CCCcceecCCCCCCCccCccCCCCCCCCCCCC
Q 048801 328 GAVTAIAFSPRPSAIYQLLSSS-------------DDGTCRIWDARY-SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393 (1715)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgS-------------~DGtVrIWDl~t-g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~ 393 (1715)
+.+.+++|+|+++.. +++++. .+|.+.+|++.. ++....+....
T Consensus 83 g~~~~~~~spdg~~l-~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~--------------------- 140 (365)
T 1jof_A 83 GHPRANDADTNTRAI-FLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE--------------------- 140 (365)
T ss_dssp SSGGGGCTTSCCEEE-EEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE---------------------
T ss_pred CCCccEEECCCCCEE-EEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEE---------------------
Confidence 335678999998621 244543 689999999973 44322221100
Q ss_pred CCCCcceeEEEEccCCCeEEEec-CCCeEEEEeCC-CCCccCCCCCceeeeeec--CCCCCeeEEEEccCcccccccccc
Q 048801 394 GLQSHQILCCAYNANGTVFVTGS-SDTFARVWSAC-KSSVEDSEQPIHELDVLS--GHENDVNYVQFSGCAVASRSAMSD 469 (1715)
Q Consensus 394 ~~h~~~VtslafSpdG~~LatGs-~DG~IrVWDl~-t~~~~~~~~~~~~l~~l~--gH~~~V~sLafspdg~as~~~~~~ 469 (1715)
..+...+.+++|+|+|++|+++. .++.|++|++. +++. ..+..+. .|...+..++|+|++
T Consensus 141 ~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~-------~~~~~~~~~~~g~~p~~~~~spdg--------- 204 (365)
T 1jof_A 141 YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV-------ELVGSVDAPDPGDHPRWVAMHPTG--------- 204 (365)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE-------EEEEEEECSSTTCCEEEEEECTTS---------
T ss_pred eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE-------EEeeeEecCCCCCCCCEeEECCCC---------
Confidence 01234588999999999887765 46899999997 4432 1222232 245678999999987
Q ss_pred cccccccccccCCcccCceEEEEc-CCCeEEEEecCC--CccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC
Q 048801 470 AFKEENVPKFKNSWFCHDNIVTCS-RDGSAIIWIPRS--RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR 546 (1715)
Q Consensus 470 ~~~~~~~~~~~~s~~~~~~LaSgS-~DGsIrIWDl~t--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~ 546 (1715)
++|++++ .++.|.+|++.. ++..... . .+...+. ...++..
T Consensus 205 -----------------~~l~v~~~~~~~v~v~~~~~~~g~~~~~~----~--~~~~~~~-------------~~~g~~~ 248 (365)
T 1jof_A 205 -----------------NYLYALMEAGNRICEYVIDPATHMPVYTH----H--SFPLIPP-------------GIPDRDP 248 (365)
T ss_dssp -----------------SEEEEEETTTTEEEEEEECTTTCCEEEEE----E--EEESSCT-------------TCCCBCT
T ss_pred -----------------CEEEEEECCCCeEEEEEEeCCCCcEEEcc----c--eEEcCCC-------------CcCCccc
Confidence 5565554 578999998752 2210000 0 0000000 0001111
Q ss_pred ------CeeEEE-eCCCCCEEEEEecCC------eEEEEECC-CCceEEE---EecCCCCeEEEEEccC--CCcEEEEEe
Q 048801 547 ------GVNMIV-WSLDNRFVLAAIMDC------RICVWNAV-DGSLVHS---LTGHSASSYVLDVHPF--NPRIAMSAG 607 (1715)
Q Consensus 547 ------~Vtsla-fSPDG~~LaTgs~DG------tI~IWDl~-sg~~l~t---L~gH~~~V~sLafSP~--dg~lLaSgs 607 (1715)
.+..++ |+|||++|+++..+. .|.+|++. ++++... +..+...+..++|+|. ++++|++++
T Consensus 249 ~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~ 328 (365)
T 1jof_A 249 ETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD 328 (365)
T ss_dssp TTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred ccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE
Confidence 578899 999999988766432 89999996 6765442 3345555678899994 456666666
Q ss_pred C-CCcEEEEECCCC
Q 048801 608 Y-DGRTIVWDIWEG 620 (1715)
Q Consensus 608 ~-DGtI~VWDl~tg 620 (1715)
. ++.|.||++...
T Consensus 329 ~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 329 DQEGWLEIYRWKDE 342 (365)
T ss_dssp SSSCEEEEEEEETT
T ss_pred cCCCeEEEEEEchh
Confidence 5 589999998765
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-14 Score=171.61 Aligned_cols=278 Identities=8% Similarity=0.036 Sum_probs=178.1
Q ss_pred EEEEEeCC--CeeEEEEC--CCCCceEE--Ee-CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecC-CCCCcceecC
Q 048801 299 LVASASND--FVIRVWRL--PDGLPISV--LR-GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR-YSQYSPRIYL 370 (1715)
Q Consensus 299 lLASGS~D--GtIrVWDl--~tg~~l~~--L~-gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~-tg~~l~~i~~ 370 (1715)
+|++|+.. +.|.+|++ .++..... .. .....+..++|+|++. +|++++.+ .|.+|++. +++.......
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~---~l~~~~~~-~v~~~~~~~~g~~~~~~~~ 79 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERK---NIYGAAMK-KWSSFAVKSPTEIVHEASH 79 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSS---EEEEEEBT-EEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCC---EEEEEccc-eEEEEEECCCCCEEEeeEe
Confidence 45566553 56887765 45543221 11 2344688999999997 77787777 89999997 6654322111
Q ss_pred CCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCe--EEEec-------------CCCeEEEEeCCC-CCccCC
Q 048801 371 PKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTV--FVTGS-------------SDTFARVWSACK-SSVEDS 434 (1715)
Q Consensus 371 ~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~--LatGs-------------~DG~IrVWDl~t-~~~~~~ 434 (1715)
+. ...+.+++|+|+|++ ++++. .+|.+.+|++.. +++
T Consensus 80 ~~------------------------~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~--- 132 (365)
T 1jof_A 80 PI------------------------GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKL--- 132 (365)
T ss_dssp EC------------------------CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCE---
T ss_pred ec------------------------CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcC---
Confidence 00 011345889999984 55553 689999999963 321
Q ss_pred CCCceeeeeec-CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEc-CCCeEEEEecC-CCccCcc
Q 048801 435 EQPIHELDVLS-GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RDGSAIIWIPR-SRRSHGK 511 (1715)
Q Consensus 435 ~~~~~~l~~l~-gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~DGsIrIWDl~-t~~~~~~ 511 (1715)
...+..+. .+...+.+++|+|++ ++|+++. .++.|.+|++. +++...
T Consensus 133 ---~~~~~~~~~~~~~~~~~~~~spdG--------------------------~~l~~~~~~~~~v~~~~~~~~g~~~~- 182 (365)
T 1jof_A 133 ---EKNVQNYEYQENTGIHGMVFDPTE--------------------------TYLYSADLTANKLWTHRKLASGEVEL- 182 (365)
T ss_dssp ---EEEEEEEECCTTCCEEEEEECTTS--------------------------SEEEEEETTTTEEEEEEECTTSCEEE-
T ss_pred ---cceEeeEEeCCCCcceEEEECCCC--------------------------CEEEEEcCCCCEEEEEEECCCCCEEE-
Confidence 11122211 245678999999987 5565544 57899999997 433110
Q ss_pred cccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec-CCeEEEEECC--CCceEE---EEe-
Q 048801 512 VGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM-DCRICVWNAV--DGSLVH---SLT- 584 (1715)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~-DGtI~IWDl~--sg~~l~---tL~- 584 (1715)
. ..+ ....+...+..++|+|||++|++++. ++.|.+|++. +|++.. .+.
T Consensus 183 ~------~~~------------------~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~ 238 (365)
T 1jof_A 183 V------GSV------------------DAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL 238 (365)
T ss_dssp E------EEE------------------ECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred e------eeE------------------ecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEc
Confidence 0 000 00112456889999999999988775 6899999865 566532 232
Q ss_pred ------cCCC------CeEEEE-EccCCCcEEEEEeC-CC-----cEEEEECC-CCceEEE---EEcccceEEEEEEcC-
Q 048801 585 ------GHSA------SSYVLD-VHPFNPRIAMSAGY-DG-----RTIVWDIW-EGTPIRI---YEIGRFKLVDGKFSP- 640 (1715)
Q Consensus 585 ------gH~~------~V~sLa-fSP~dg~lLaSgs~-DG-----tI~VWDl~-tgk~l~t---l~~h~~~V~svafSP- 640 (1715)
+|.. .+..++ |+| ++++|++++. ++ +|.+|++. +|+.... +..+...+..++|+|
T Consensus 239 ~~~~~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~ 317 (365)
T 1jof_A 239 IPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPC 317 (365)
T ss_dssp SCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEEC
T ss_pred CCCCcCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCC
Confidence 1222 488999 999 5555554443 33 89999996 6765442 332344566789999
Q ss_pred --CCCEEEEEeCC-CeEEEEECCCC
Q 048801 641 --DGTSIVLSDDV-GQIYLLNTGQG 662 (1715)
Q Consensus 641 --DG~~LAsgs~D-G~I~IWdl~tG 662 (1715)
||++|++++.+ +.|.||++...
T Consensus 318 ~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 318 PWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999998764 89999998654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.6e-15 Score=178.56 Aligned_cols=298 Identities=10% Similarity=-0.020 Sum_probs=192.3
Q ss_pred EEEeCCCCcEEEEecCCCCC-----eEEEEECCCCCEEEEEeCC---CeeEEEECCCCCceEEEeCCCCCeEEEEecCCC
Q 048801 268 KIWSMETAFCLASCRGHEGD-----ITDLAVSSNNTLVASASND---FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRP 339 (1715)
Q Consensus 268 rIWDl~tgk~l~tL~gHs~~-----VtsLafSpDg~lLASGS~D---GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg 339 (1715)
..+|..++..+..+..+... +.+++|||||++|+.+... ..|.+||+.+++......++......+.|+|++
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg 92 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE 92 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC
Confidence 34578888888888766444 7788999999998877553 468888998877544433333223347899999
Q ss_pred CcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC
Q 048801 340 SAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT 419 (1715)
Q Consensus 340 ~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG 419 (1715)
. +|+.++.++.|.+||+.+++.......+ . .|+++|+.|+....+.
T Consensus 93 ~---~l~~~~~~~~l~~~d~~~~~~~~~~~~~-------------------------~------~~~~~g~~l~~~~~~~ 138 (396)
T 3c5m_A 93 R---AFFYVKNELNLMKVDLETLEEQVIYTVD-------------------------E------EWKGYGTWVANSDCTK 138 (396)
T ss_dssp S---EEEEEETTTEEEEEETTTCCEEEEEECC-------------------------T------TEEEEEEEEECTTSSE
T ss_pred C---EEEEEEcCCcEEEEECCCCCcEEEEecc-------------------------c------ccCCCCCEEEeccCCc
Confidence 8 7888888889999999876533221100 0 1667777777776665
Q ss_pred eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEE-----cC
Q 048801 420 FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTC-----SR 494 (1715)
Q Consensus 420 ~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSg-----S~ 494 (1715)
...+|.. .+.|+|++ +.++.+ ..
T Consensus 139 ~~~~~~~--------------------------~~~~spdg--------------------------~~~~~~~~~~~~~ 166 (396)
T 3c5m_A 139 LVGIEIL--------------------------KRDWQPLT--------------------------SWEKFAEFYHTNP 166 (396)
T ss_dssp EEEEEEE--------------------------GGGCCCCC--------------------------SHHHHHHHHHTCC
T ss_pred ccccccc--------------------------ccccCCCC--------------------------cceeeeeeccCCC
Confidence 5554431 11234443 222222 34
Q ss_pred CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEEEecC------C
Q 048801 495 DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLAAIMD------C 567 (1715)
Q Consensus 495 DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaTgs~D------G 567 (1715)
+..|.+||+.+++. ..+..+...+..++|+| +|..|+.++.+ .
T Consensus 167 ~~~l~~~d~~~g~~------------------------------~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~ 216 (396)
T 3c5m_A 167 TCRLIKVDIETGEL------------------------------EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDA 216 (396)
T ss_dssp CEEEEEEETTTCCE------------------------------EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSC
T ss_pred cceEEEEECCCCcE------------------------------EeeccCCcccccceECCCCCCEEEEEecCCCCCCCc
Confidence 66788998876431 11122345678899999 88877776643 3
Q ss_pred eEEEEECCCCceEEEEecC--CCCeEEEEEccCCCcEEEEEeCC----CcEEEEECCCCceEEEEEcccceEEEEEEcC-
Q 048801 568 RICVWNAVDGSLVHSLTGH--SASSYVLDVHPFNPRIAMSAGYD----GRTIVWDIWEGTPIRIYEIGRFKLVDGKFSP- 640 (1715)
Q Consensus 568 tI~IWDl~sg~~l~tL~gH--~~~V~sLafSP~dg~lLaSgs~D----GtI~VWDl~tgk~l~tl~~h~~~V~svafSP- 640 (1715)
.|++|++..++.. .+..+ ...+..++|+|++..+++++..+ +.|++||+.+++....... .. .. +.|+|
T Consensus 217 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~ 292 (396)
T 3c5m_A 217 RMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNF 292 (396)
T ss_dssp CCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECS
T ss_pred eEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCC
Confidence 6899998766543 33333 23578899999544444443322 4499999998876554332 22 23 89999
Q ss_pred CCCEEEEEe----------------CCCeEEEEECCCCcccccc----------------ccceeecCCCccEEEcC
Q 048801 641 DGTSIVLSD----------------DVGQIYLLNTGQGESQKDA----------------KYDQFFLGDYRPLIRDS 685 (1715)
Q Consensus 641 DG~~LAsgs----------------~DG~I~IWdl~tGe~~k~~----------------~~~~~fs~D~r~L~~d~ 685 (1715)
||++|++++ .++.|++|++.+++...-. .....|++|++.|++..
T Consensus 293 dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s 369 (396)
T 3c5m_A 293 DGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTS 369 (396)
T ss_dssp SSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred CCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEe
Confidence 999888764 3478999999887643211 22346788888877653
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.9e-13 Score=168.98 Aligned_cols=338 Identities=12% Similarity=0.065 Sum_probs=229.6
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC--CCCceEEEeCCCCCe
Q 048801 253 RSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP--DGLPISVLRGHTGAV 330 (1715)
Q Consensus 253 pDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~--tg~~l~~L~gH~~~V 330 (1715)
+.+.++++...++.|.++|..+++.+.++... ..+..++|+|||++|++++.|+.|.+||+. +++.+..+... ...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCC
Confidence 44556777788999999999999999988743 357799999999999999999999999996 88888888753 346
Q ss_pred EEEEec----CCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC-CcceeEEEE
Q 048801 331 TAIAFS----PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ-SHQILCCAY 405 (1715)
Q Consensus 331 tsLafS----Pdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h-~~~Vtslaf 405 (1715)
..++|+ |+++. .+++...+++|.++|..+.+.+..+....... .....| ...+..+.+
T Consensus 243 ~~ia~s~~~~pDGk~--l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~---------------~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 243 RSIETSKMEGWEDKY--AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY---------------DEQEYHPEPRVAAILA 305 (567)
T ss_dssp EEEEECCSTTCTTTE--EEEEEEETTEEEEEETTTCCEEEEEECCEECT---------------TTCCEESCCCEEEEEE
T ss_pred ceeEEccccCCCCCE--EEEEEccCCeEEEEECCCCcEEEEEecccccc---------------ccccccCCCceEEEEE
Confidence 899999 69883 44555567999999998888776654321100 000001 124778888
Q ss_pred ccCCCe-EEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcc
Q 048801 406 NANGTV-FVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWF 484 (1715)
Q Consensus 406 SpdG~~-LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~ 484 (1715)
++++.. ++.....|.|.++|...... ..+..+ ........+.|+|++
T Consensus 306 s~~~~~~vv~~~~~g~v~~vd~~~~~~-------~~v~~i-~~~~~~~d~~~~pdg------------------------ 353 (567)
T 1qks_A 306 SHYRPEFIVNVKETGKILLVDYTDLNN-------LKTTEI-SAERFLHDGGLDGSH------------------------ 353 (567)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCSSE-------EEEEEE-ECCSSEEEEEECTTS------------------------
T ss_pred cCCCCEEEEEecCCCeEEEEecCCCcc-------ceeeee-eccccccCceECCCC------------------------
Confidence 887654 44556679999999865321 111122 223356678899886
Q ss_pred cCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC-CeeEEEeCCCCCEE-EE
Q 048801 485 CHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR-GVNMIVWSLDNRFV-LA 562 (1715)
Q Consensus 485 ~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~-~VtslafSPDG~~L-aT 562 (1715)
..+++++..++.|.++|+.+++....+. + + ....|.+ ++. + ++|++..+ ++
T Consensus 354 -r~~~va~~~sn~V~ViD~~t~kl~~~i~---------v-----------g----g~~Phpg~g~~-~-~~p~~g~v~~t 406 (567)
T 1qks_A 354 -RYFITAANARNKLVVIDTKEGKLVAIED---------T-----------G----GQTPHPGRGAN-F-VHPTFGPVWAT 406 (567)
T ss_dssp -CEEEEEEGGGTEEEEEETTTTEEEEEEE---------C-----------S----SSSBCCTTCEE-E-EETTTEEEEEE
T ss_pred -CEEEEEeCCCCeEEEEECCCCcEEEEEe---------c-----------c----CcCCCCcccee-e-ECCCCCcEEEe
Confidence 2345566678999999999765322210 0 0 0112332 232 2 57875555 44
Q ss_pred Ee-cCCeEEEEECCC-------CceEEEEecCCCCeEEEEEccCCCcEEEEEeC-------CCcEEEEECCCC-----c-
Q 048801 563 AI-MDCRICVWNAVD-------GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGY-------DGRTIVWDIWEG-----T- 621 (1715)
Q Consensus 563 gs-~DGtI~IWDl~s-------g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~-------DGtI~VWDl~tg-----k- 621 (1715)
+. .++.|.|+|..+ .+.++++......-..|.++| +++.|..... .++|.|+|+.+. .
T Consensus 407 ~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p-~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~ 485 (567)
T 1qks_A 407 SHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHP-NSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDP 485 (567)
T ss_dssp EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCC
T ss_pred CCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCC-CCCeEEEecCCCCCcccCceEEEEECCcccccccCC
Confidence 43 468999999988 678888876644445678899 4454444332 359999999876 2
Q ss_pred eEEEEEc--------ccceEEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCccccccc
Q 048801 622 PIRIYEI--------GRFKLVDGKFSPDGTSIVLSD-----DVGQIYLLNTGQGESQKDAK 669 (1715)
Q Consensus 622 ~l~tl~~--------h~~~V~svafSPDG~~LAsgs-----~DG~I~IWdl~tGe~~k~~~ 669 (1715)
.+..+.. ....+..+.|+|||+.|.++. .++.|.|+|..+++.++..+
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 486 EFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp CEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 2244432 234688999999999988763 37999999999998765444
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-14 Score=184.72 Aligned_cols=302 Identities=12% Similarity=-0.006 Sum_probs=198.2
Q ss_pred EecCCCCCeEEEEECCCCCEEEEE--eCCCeeEEEECCCCCceEEEeCCCCCeE---------EEEec--CCCCcceE-E
Q 048801 280 SCRGHEGDITDLAVSSNNTLVASA--SNDFVIRVWRLPDGLPISVLRGHTGAVT---------AIAFS--PRPSAIYQ-L 345 (1715)
Q Consensus 280 tL~gHs~~VtsLafSpDg~lLASG--S~DGtIrVWDl~tg~~l~~L~gH~~~Vt---------sLafS--Pdg~~~~~-L 345 (1715)
.+.+|...|..++|++++.++++. +.++...||....+.....+..|...+. ...|+ |+++ . |
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~---~~l 94 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGG---PLL 94 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSS---CEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCC---eEE
Confidence 456788999999999887777776 5588999999766666777877776666 66665 9987 4 4
Q ss_pred EEec-CCCcEEEEecC--C-CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC---
Q 048801 346 LSSS-DDGTCRIWDAR--Y-SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD--- 418 (1715)
Q Consensus 346 aSgS-~DGtVrIWDl~--t-g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D--- 418 (1715)
+.++ .+..|.+|++. + +.. ..+... ....+...+.+++|+|||+.|++++.+
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~-~~l~~~--------------------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~ 153 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVP-RPLTPV--------------------SAVGGGLRWADPVLLPERGEVWCMAEEFTG 153 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCC-EECSCC--------------------CCSTTCEEEEEEEEETTTTEEEEEEEEECS
T ss_pred EEEECCCCeEEEEcCCCCCCCCC-EeccCC--------------------ccCCCCccccCcEECCCCCEEEEEEecccC
Confidence 4443 35667777765 2 321 111100 001134568899999999999988876
Q ss_pred -------CeEEEEeCCCCCccCCCCCceeeeeec-CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEE
Q 048801 419 -------TFARVWSACKSSVEDSEQPIHELDVLS-GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIV 490 (1715)
Q Consensus 419 -------G~IrVWDl~t~~~~~~~~~~~~l~~l~-gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~La 490 (1715)
..|++|++.+.... . ......+. .+...+..++|+|++ +.|+
T Consensus 154 ~~~~~~~~~i~~~~~~~~~~~---~-~~~~~~l~~~~~~~~~~~~~SpDG--------------------------~~la 203 (662)
T 3azo_A 154 EGPSDVRRFLAAVPLDGSAAA---D-RSAVRELSDDAHRFVTGPRLSPDG--------------------------RQAV 203 (662)
T ss_dssp SSTTCEEEEEEEEETTSTTTT---C-GGGSEESSCSCSSEECCCEECTTS--------------------------SEEE
T ss_pred CCCCCceeEEEEEECCCCccc---c-CCceeEEEecCCCcccCceECCCC--------------------------CEEE
Confidence 58999999761000 0 00123344 555678889999997 6777
Q ss_pred EEcCC--------CeEEEEecC-CCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE
Q 048801 491 TCSRD--------GSAIIWIPR-SRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561 (1715)
Q Consensus 491 SgS~D--------GsIrIWDl~-t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La 561 (1715)
.++.+ ..|.+||+. ++... ........+...+..++|+|||++++
T Consensus 204 ~~~~~~~~~~~~~~~i~~~d~~~~g~~~--------------------------~~~~l~~~~~~~~~~~~~spdg~l~~ 257 (662)
T 3azo_A 204 WLAWDHPRMPWEGTELKTARVTEDGRFA--------------------------DTRTLLGGPEEAIAQAEWAPDGSLIV 257 (662)
T ss_dssp EEEECTTCCTTTCEEEEEEEECTTSCEE--------------------------EEEEEEEETTBCEEEEEECTTSCEEE
T ss_pred EEECCCCCCCCCCcEEEEEEECCCCccc--------------------------ccEEeCCCCCceEcceEECCCCeEEE
Confidence 66644 479999987 33100 00011122356788999999999888
Q ss_pred EEecCC--eEEEEECCCCceEEEEecCCCC--------eEEEEEccCCCcEEEEEeCCCcEEEE--ECCCCceEEEEEcc
Q 048801 562 AAIMDC--RICVWNAVDGSLVHSLTGHSAS--------SYVLDVHPFNPRIAMSAGYDGRTIVW--DIWEGTPIRIYEIG 629 (1715)
Q Consensus 562 Tgs~DG--tI~IWDl~sg~~l~tL~gH~~~--------V~sLafSP~dg~lLaSgs~DGtI~VW--Dl~tgk~l~tl~~h 629 (1715)
++..++ .|++||+.+++....+..+... +..++|+| +++++++++. +.++|| |+.+++ +..+..+
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~ 334 (662)
T 3azo_A 258 ATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGILDPESGE-LVDAAGP 334 (662)
T ss_dssp EECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEEEETTTTE-EEECCSS
T ss_pred EECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeC-CCEEEEEEEc-CccEEEEEECCCCc-EEEecCC
Confidence 888888 6777777677665444433322 46788888 7788889888 999999 555555 6667666
Q ss_pred cceEEEEEEcCCCCEEE--EEeCCC--eEEEEECCCCccc
Q 048801 630 RFKLVDGKFSPDGTSIV--LSDDVG--QIYLLNTGQGESQ 665 (1715)
Q Consensus 630 ~~~V~svafSPDG~~LA--sgs~DG--~I~IWdl~tGe~~ 665 (1715)
...+..+ |++++..++ +++.+. .|++|++.+++..
T Consensus 335 ~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 335 WTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp CCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred CCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 6667665 145555444 444443 6777787777543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-13 Score=159.94 Aligned_cols=256 Identities=10% Similarity=0.063 Sum_probs=182.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC------------------------CcEEEEeCCCCcEEEEec-CCCCCeEEEEECCCC
Q 048801 243 RDAVYCAIFDRSGRFVITGSDD------------------------RLVKIWSMETAFCLASCR-GHEGDITDLAVSSNN 297 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~D------------------------GtIrIWDl~tgk~l~tL~-gHs~~VtsLafSpDg 297 (1715)
-+.|.+|+++++|+++++.+.+ +.|.+||..+++.+..+. ++-.....|+++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999988877 479999999999887765 455689999999999
Q ss_pred CEEEEEeCCCeeEEEECCCCC-ceEEE---------eCCCCCeEEEEecC-CCCcceEEEEec-CCCcEEEEecCCCCCc
Q 048801 298 TLVASASNDFVIRVWRLPDGL-PISVL---------RGHTGAVTAIAFSP-RPSAIYQLLSSS-DDGTCRIWDARYSQYS 365 (1715)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tg~-~l~~L---------~gH~~~VtsLafSP-dg~~~~~LaSgS-~DGtVrIWDl~tg~~l 365 (1715)
+++++...++.|++|+..... .+..+ .++......|+|+| ++. ++++.+ .++.|++|+ .++..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~---lyv~d~~~~~~I~~~~-~~g~~~ 178 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA---VFVSDGYCNSRIVQFS-PSGKFV 178 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC---EEEEECSSCCEEEEEC-TTSCEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe---EEEEeCCCCCeEEEEc-CCCCEE
Confidence 999888889999999975432 56665 24455789999999 565 566665 689999999 455544
Q ss_pred ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC-CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee
Q 048801 366 PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN-GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL 444 (1715)
Q Consensus 366 ~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd-G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l 444 (1715)
..+...... ......+-.....++++|+ |.++++...++.|++|+..+++. +..+
T Consensus 179 ~~~~~~g~~---------------~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~---------~~~~ 234 (329)
T 3fvz_A 179 TQWGEESSG---------------SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF---------VREI 234 (329)
T ss_dssp EEECEECCS---------------SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE---------EEEE
T ss_pred EEeccCCCC---------------CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE---------EEEE
Confidence 433211100 0000112234789999998 88888888899999999875432 2222
Q ss_pred --cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccccccc
Q 048801 445 --SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLK 522 (1715)
Q Consensus 445 --~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~ 522 (1715)
..+...+..++|+| + .++
T Consensus 235 ~~~~~~~~~~~~~~~p-g---------------------------~~~-------------------------------- 254 (329)
T 3fvz_A 235 KHASFGRNVFAISYIP-G---------------------------FLF-------------------------------- 254 (329)
T ss_dssp CCTTTTTCEEEEEEET-T---------------------------EEE--------------------------------
T ss_pred eccccCCCcceeeecC-C---------------------------EEE--------------------------------
Confidence 23344555555555 2 111
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe---cCCCCeEEEEEccCC
Q 048801 523 VPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT---GHSASSYVLDVHPFN 599 (1715)
Q Consensus 523 ~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~---gH~~~V~sLafSP~d 599 (1715)
..+|..+++...+..|++|++.+++.+..+. ++...+.+|+++| +
T Consensus 255 -------------------------------~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-d 302 (329)
T 3fvz_A 255 -------------------------------AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-D 302 (329)
T ss_dssp -------------------------------EEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-T
T ss_pred -------------------------------EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-C
Confidence 1122222333345689999999999888883 6777899999999 5
Q ss_pred CcEEEEEeCCCcEEEEECC
Q 048801 600 PRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 600 g~lLaSgs~DGtI~VWDl~ 618 (1715)
+.++++...+++|++|++.
T Consensus 303 G~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 303 GTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp SEEEEEESSSCCEEEEEEE
T ss_pred CCEEEEECCCCEEEEEeCC
Confidence 6888999999999999974
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-13 Score=159.87 Aligned_cols=260 Identities=12% Similarity=0.083 Sum_probs=172.6
Q ss_pred CCeEEEEEcCCCCEEEEEe---------CCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC---C--ee
Q 048801 244 DAVYCAIFDRSGRFVITGS---------DDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND---F--VI 309 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS---------~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D---G--tI 309 (1715)
..+..+++ ||++|+... .++.|.+|++.+++... + ..+.+++|||||++||.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 34666777 888887652 25789999999887543 3 568899999999999988754 3 48
Q ss_pred EEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecC---------------------------CCcEEEEecCCC
Q 048801 310 RVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD---------------------------DGTCRIWDARYS 362 (1715)
Q Consensus 310 rVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~---------------------------DGtVrIWDl~tg 362 (1715)
.+|++.+++.......+ . +.+++|+|++. .|+.++. ...|.+||+.++
T Consensus 88 ~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~---~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 162 (347)
T 2gop_A 88 WVADLETLSSKKILEAK-N-IRSLEWNEDSR---KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE 162 (347)
T ss_dssp EEEETTTTEEEEEEEES-E-EEEEEECTTSS---EEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred EEEECCCCceEEEEcCC-C-ccceeECCCCC---EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence 88898887765555433 4 99999999998 5555542 256888998876
Q ss_pred CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC-------eEEEEeCCCCCccCCC
Q 048801 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT-------FARVWSACKSSVEDSE 435 (1715)
Q Consensus 363 ~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG-------~IrVWDl~t~~~~~~~ 435 (1715)
+.+..+.. . .+..++|+|+| +++++..++ ...||.+.+++
T Consensus 163 ~~~~~l~~--------------------------~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~----- 209 (347)
T 2gop_A 163 EVIEEFEK--------------------------P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK----- 209 (347)
T ss_dssp EEEEEEEE--------------------------E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-----
T ss_pred eEEeeecC--------------------------C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-----
Confidence 64222211 1 36789999999 777775432 34455443321
Q ss_pred CCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC--------CeEEEEecCCCc
Q 048801 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD--------GSAIIWIPRSRR 507 (1715)
Q Consensus 436 ~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D--------GsIrIWDl~t~~ 507 (1715)
...+..+ ..+..+ +|++ +.|+.++.+ ..|.+|| +++
T Consensus 210 -----~~~l~~~-~~~~~~--spdg--------------------------~~l~~~~~~~~~~~~~~~~l~~~d--~~~ 253 (347)
T 2gop_A 210 -----EEKMFEK-VSFYAV--DSDG--------------------------ERILLYGKPEKKYMSEHNKLYIYD--GKE 253 (347)
T ss_dssp -----EEEEEEE-ESEEEE--EECS--------------------------SCEEEEECCSSSCCCSSCEEEEEC--SSC
T ss_pred -----eEEeccC-cceeeE--CCCC--------------------------CEEEEEEccccCCccccceEEEEC--CCc
Confidence 1222223 344443 7776 556655543 3677776 321
Q ss_pred cCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeE-EEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecC
Q 048801 508 SHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNM-IVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH 586 (1715)
Q Consensus 508 ~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vts-lafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH 586 (1715)
. ......+...+.. ++|+ || ++++++.++.++|| +.+++. ..+..+
T Consensus 254 ~-----------------------------~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~ 300 (347)
T 2gop_A 254 V-----------------------------MGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKG 300 (347)
T ss_dssp E-----------------------------EESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-EEEECS
T ss_pred e-----------------------------EeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-EEEecC
Confidence 0 1111233456775 8999 88 88999999999999 876665 444556
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCcE-EEEECCCCc
Q 048801 587 SASSYVLDVHPFNPRIAMSAGYDGRT-IVWDIWEGT 621 (1715)
Q Consensus 587 ~~~V~sLafSP~dg~lLaSgs~DGtI-~VWDl~tgk 621 (1715)
...|.+++|+| .++++++.++.. .||.+. ++
T Consensus 301 ~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 301 RHWIMGFDVDE---IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp SSEEEEEEESS---SEEEEEECSSSCCEEEEES-SS
T ss_pred CCeEEeeeeeC---cEEEEEcCCCChHHheEeC-Cc
Confidence 78899999998 577777777765 777776 54
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.56 E-value=6.2e-13 Score=157.21 Aligned_cols=278 Identities=11% Similarity=-0.034 Sum_probs=192.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L 323 (1715)
..|.+++|++++..++..+.++.+++| .+.....+..+...+.+++|+++|++++++..++.|.+||..+++....+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 346778899988888877888999999 45677778888888999999999998888888999999999888766555
Q ss_pred eCCCCCeEEEEecCCCCcceEEEEecCC----CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcc
Q 048801 324 RGHTGAVTAIAFSPRPSAIYQLLSSSDD----GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399 (1715)
Q Consensus 324 ~gH~~~VtsLafSPdg~~~~~LaSgS~D----GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~ 399 (1715)
..+...+.+++|++++. ++++...+ +.|.+||..++.....+.. ......
T Consensus 83 ~~~~~~~~~i~~~~dg~---l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~-----------------------~~~~~~ 136 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGR---LFVCYLGDFKSTGGIFAATENGDNLQDIIED-----------------------LSTAYC 136 (333)
T ss_dssp ECSSSSEEEEEECTTSC---EEEEECTTSSSCCEEEEECTTSCSCEEEECS-----------------------SSSCCC
T ss_pred eCCCCCcceEEECCCCc---EEEEeCCCCCCCceEEEEeCCCCEEEEEEcc-----------------------CccCCc
Confidence 45678899999999986 56666555 6899999887654322110 001345
Q ss_pred eeEEEEccCCCeEEEecC------CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccc
Q 048801 400 ILCCAYNANGTVFVTGSS------DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 400 VtslafSpdG~~LatGs~------DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
+.+++++|+|+++++... .+.|..|+..+++. ..+..+...+..++|++++
T Consensus 137 ~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~~~~~~i~~~~dg------------- 193 (333)
T 2dg1_A 137 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV----------TPIIQNISVANGIALSTDE------------- 193 (333)
T ss_dssp EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE----------EEEEEEESSEEEEEECTTS-------------
T ss_pred ccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE----------EEeecCCCcccceEECCCC-------------
Confidence 889999999988877653 35666666544321 1122223357889999986
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCC-CccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS-RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIV 552 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsla 552 (1715)
..++++.+.++.|.+|++.+ +.....+. ... ...+.. ...+..++
T Consensus 194 ------------~~l~v~~~~~~~i~~~d~~~~g~~~~~~~---~~~------------------~~~~~~-~~~~~~i~ 239 (333)
T 2dg1_A 194 ------------KVLWVTETTANRLHRIALEDDGVTIQPFG---ATI------------------PYYFTG-HEGPDSCC 239 (333)
T ss_dssp ------------SEEEEEEGGGTEEEEEEECTTSSSEEEEE---EEE------------------EEECCS-SSEEEEEE
T ss_pred ------------CEEEEEeCCCCeEEEEEecCCCcCccccc---ceE------------------EEecCC-CCCCCceE
Confidence 12455666789999999863 11110000 000 000011 13567899
Q ss_pred eCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCC------CeEEEEEccCCCcEEEEEeC
Q 048801 553 WSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSA------SSYVLDVHPFNPRIAMSAGY 608 (1715)
Q Consensus 553 fSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~------~V~sLafSP~dg~lLaSgs~ 608 (1715)
++++|+++++...++.|.+||. +++.+..+..+.. .+.+++|+|+++.+++++..
T Consensus 240 ~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 240 IDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 9999998888878899999998 6777777765443 68899999854455555443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.55 E-value=7.2e-13 Score=156.67 Aligned_cols=270 Identities=13% Similarity=0.126 Sum_probs=188.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCc
Q 048801 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365 (1715)
Q Consensus 286 ~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l 365 (1715)
..|.+++|++++..++..+.++.+++| .+.....+..+...+.+++|++++. +++++..++.|.+||..+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~---l~~~~~~~~~i~~~d~~~~~~~ 79 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQ---LFLLDVFEGNIFKINPETKEIK 79 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSC---EEEEETTTCEEEEECTTTCCEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCC---EEEEECCCCEEEEEeCCCCcEE
Confidence 457788999998888887888999999 4566777777888889999999986 6778888999999999877643
Q ss_pred ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC----CeEEEEeCCCCCccCCCCCceee
Q 048801 366 PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD----TFARVWSACKSSVEDSEQPIHEL 441 (1715)
Q Consensus 366 ~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D----G~IrVWDl~t~~~~~~~~~~~~l 441 (1715)
.... .+...+.+++++++|++++++..+ +.|.+||..++.. ..+
T Consensus 80 ~~~~-------------------------~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~-------~~~ 127 (333)
T 2dg1_A 80 RPFV-------------------------SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL-------QDI 127 (333)
T ss_dssp EEEE-------------------------CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC-------EEE
T ss_pred EEee-------------------------CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE-------EEE
Confidence 2210 013458999999999988877666 6899999876532 101
Q ss_pred eeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC------CCeEEEEecCCCccCcccccc
Q 048801 442 DVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR------DGSAIIWIPRSRRSHGKVGRW 515 (1715)
Q Consensus 442 ~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~------DGsIrIWDl~t~~~~~~~~~~ 515 (1715)
.....+...+.++++++++ ..+++... .+.|..|+..+++.
T Consensus 128 ~~~~~~~~~~~~i~~d~~g--------------------------~l~v~~~~~~~~~~~~~l~~~~~~~~~~------- 174 (333)
T 2dg1_A 128 IEDLSTAYCIDDMVFDSKG--------------------------GFYFTDFRGYSTNPLGGVYYVSPDFRTV------- 174 (333)
T ss_dssp ECSSSSCCCEEEEEECTTS--------------------------CEEEEECCCBTTBCCEEEEEECTTSCCE-------
T ss_pred EccCccCCcccceEECCCC--------------------------CEEEEeccccccCCCceEEEEeCCCCEE-------
Confidence 1111244578899999876 45555443 34555565543221
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEE-ecCCeEEEEECCC-CceEEEE--------ec
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAA-IMDCRICVWNAVD-GSLVHSL--------TG 585 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTg-s~DGtI~IWDl~s-g~~l~tL--------~g 585 (1715)
..+......+..++|+|+|++|+++ +.++.|.+|++.+ +..+..+ .+
T Consensus 175 -----------------------~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~ 231 (333)
T 2dg1_A 175 -----------------------TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG 231 (333)
T ss_dssp -----------------------EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS
T ss_pred -----------------------EEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC
Confidence 0011112246789999999866544 5678999999964 4433221 22
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccc------eEEEEEEcCCCCEEEEEeCCC
Q 048801 586 HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRF------KLVDGKFSPDGTSIVLSDDVG 652 (1715)
Q Consensus 586 H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~------~V~svafSPDG~~LAsgs~DG 652 (1715)
+ ..+..+++++ +++++++...++.|.+||. +++.+..+..+.. .+.+++|+|||..|++++.+|
T Consensus 232 ~-~~~~~i~~d~-~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 232 H-EGPDSCCIDS-DDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp S-SEEEEEEEBT-TCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred C-CCCCceEECC-CCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 2 4678899999 6677777777899999998 6777777765433 578999999998887666553
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-12 Score=148.72 Aligned_cols=243 Identities=10% Similarity=0.125 Sum_probs=174.1
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe------CCCCCeEEEEec-CCCCcceEEEEec-CCCcE
Q 048801 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR------GHTGAVTAIAFS-PRPSAIYQLLSSS-DDGTC 354 (1715)
Q Consensus 283 gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~------gH~~~VtsLafS-Pdg~~~~~LaSgS-~DGtV 354 (1715)
++-..+.++++++++.++++...++.|.+||.. +..+..+. +|...+.++++. +++. ++++.. .++.|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~---l~v~~~~~~~~i 102 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD---IIVTERSPTHQI 102 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE---EEEEECGGGCEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe---EEEEcCCCCCEE
Confidence 456678999999999998888889999999976 66666664 244578999994 5553 444443 38899
Q ss_pred EEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCC
Q 048801 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDS 434 (1715)
Q Consensus 355 rIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~ 434 (1715)
.+|| .+++.+..+.. .+...+.+++++++|+++++...++.|.+|+....
T Consensus 103 ~~~d-~~g~~~~~~~~------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~----- 152 (286)
T 1q7f_A 103 QIYN-QYGQFVRKFGA------------------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN----- 152 (286)
T ss_dssp EEEC-TTSCEEEEECT------------------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-----
T ss_pred EEEC-CCCcEEEEecC------------------------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-----
Confidence 9999 45554333211 11234789999999998888888899999996431
Q ss_pred CCCceeeeeec--CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccc
Q 048801 435 EQPIHELDVLS--GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKV 512 (1715)
Q Consensus 435 ~~~~~~l~~l~--gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~ 512 (1715)
.+..+. .+...+..+++++++ ..+++...++.|.+|+..... ...
T Consensus 153 -----~~~~~~~~~~~~~p~~i~~~~~g--------------------------~l~v~~~~~~~i~~~~~~g~~-~~~- 199 (286)
T 1q7f_A 153 -----VLHKFGCSKHLEFPNGVVVNDKQ--------------------------EIFISDNRAHCVKVFNYEGQY-LRQ- 199 (286)
T ss_dssp -----EEEEEECTTTCSSEEEEEECSSS--------------------------EEEEEEGGGTEEEEEETTCCE-EEE-
T ss_pred -----EEEEeCCCCccCCcEEEEECCCC--------------------------CEEEEECCCCEEEEEcCCCCE-EEE-
Confidence 122222 344568899999976 577777889999999975311 000
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC-eEEEEECCCCceEEEEecCCC--C
Q 048801 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNAVDGSLVHSLTGHSA--S 589 (1715)
Q Consensus 513 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG-tI~IWDl~sg~~l~tL~gH~~--~ 589 (1715)
+. ..++...+..++++++|+++++...++ .|.+|+. +++.+..+..+.. .
T Consensus 200 ------~~--------------------~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 252 (286)
T 1q7f_A 200 ------IG--------------------GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQ 252 (286)
T ss_dssp ------ES--------------------CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSC
T ss_pred ------Ec--------------------cCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCc
Confidence 00 001124578899999999888887776 9999995 6777777765543 4
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 590 SYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 590 V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
+.+++++| +++++++ +.|++|++|++....
T Consensus 253 ~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 253 CFDVALMD-DGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEEEEEET-TTEEEEE-ETTTEEEEEECSCCC
T ss_pred ceeEEECC-CCcEEEE-CCCCeEEEEEccccc
Confidence 78999999 6677777 579999999986543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-12 Score=149.28 Aligned_cols=243 Identities=10% Similarity=0.096 Sum_probs=175.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec------CCCCCeEEEEE-CCCCCEEEEEeC-CCeeEEE
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR------GHEGDITDLAV-SSNNTLVASASN-DFVIRVW 312 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~------gHs~~VtsLaf-SpDg~lLASGS~-DGtIrVW 312 (1715)
+|-..+.+++++++|+++++...++.|.+||.. ++.+..+. +|...+.++++ .+++.++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 456778999999999988888889999999987 66666664 34567899999 577777776643 8899999
Q ss_pred ECCCCCceEEEe-CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 313 RLPDGLPISVLR-GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 313 Dl~tg~~l~~L~-gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
+ .++..+..+. .+...+.+|++.+++. ++++...++.|.+||.. ++.+..+...
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~---l~v~~~~~~~i~~~~~~-g~~~~~~~~~-------------------- 160 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGR---IIVVECKVMRVIIFDQN-GNVLHKFGCS-------------------- 160 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSC---EEEEETTTTEEEEECTT-SCEEEEEECT--------------------
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCC---EEEEECCCCEEEEEcCC-CCEEEEeCCC--------------------
Confidence 9 6777777664 3446789999999986 67777788999999964 3333222110
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec--CCCCCeeEEEEccCcccccccccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS--GHENDVNYVQFSGCAVASRSAMSD 469 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~--gH~~~V~sLafspdg~as~~~~~~ 469 (1715)
.+...+.+++++++|+++++...++.|++|+.... .+..+. ++...+..+++++++
T Consensus 161 ---~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~----------~~~~~~~~g~~~~p~~i~~d~~G--------- 218 (286)
T 1q7f_A 161 ---KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ----------YLRQIGGEGITNYPIGVGINSNG--------- 218 (286)
T ss_dssp ---TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC----------EEEEESCTTTSCSEEEEEECTTC---------
T ss_pred ---CccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC----------EEEEEccCCccCCCcEEEECCCC---------
Confidence 11234789999999998888888999999997532 223332 233578899999876
Q ss_pred cccccccccccCCcccCceEEEEcCCC-eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCe
Q 048801 470 AFKEENVPKFKNSWFCHDNIVTCSRDG-SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548 (1715)
Q Consensus 470 ~~~~~~~~~~~~s~~~~~~LaSgS~DG-sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V 548 (1715)
.++++...++ .|.+|+... +....+ . .......+
T Consensus 219 -----------------~l~v~~~~~~~~i~~~~~~g-~~~~~~-------~--------------------~~~~~~~~ 253 (286)
T 1q7f_A 219 -----------------EILIADNHNNFNLTIFTQDG-QLISAL-------E--------------------SKVKHAQC 253 (286)
T ss_dssp -----------------CEEEEECSSSCEEEEECTTS-CEEEEE-------E--------------------ESSCCSCE
T ss_pred -----------------CEEEEeCCCCEEEEEECCCC-CEEEEE-------c--------------------ccCCCCcc
Confidence 6777777776 999998643 211100 0 00112246
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEECCCC
Q 048801 549 NMIVWSLDNRFVLAAIMDCRICVWNAVDG 577 (1715)
Q Consensus 549 tslafSPDG~~LaTgs~DGtI~IWDl~sg 577 (1715)
.+++++|+|+++++ +.+++|++|++...
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 78999999987776 67999999998654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.5e-12 Score=150.92 Aligned_cols=251 Identities=12% Similarity=0.087 Sum_probs=178.2
Q ss_pred CCCeEEEEecCCCCcceEEEEecCC------------------------CcEEEEecCCCCCcceecCCCCCCCccCccC
Q 048801 327 TGAVTAIAFSPRPSAIYQLLSSSDD------------------------GTCRIWDARYSQYSPRIYLPKPPDAITGKSN 382 (1715)
Q Consensus 327 ~~~VtsLafSPdg~~~~~LaSgS~D------------------------GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~ 382 (1715)
-+.+.+|+++|++. ++++...+ +.|.+||..+++.+..+..
T Consensus 23 l~~v~~va~d~~G~---l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~------------ 87 (329)
T 3fvz_A 23 PGQVSGVALDSKNN---LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK------------ 87 (329)
T ss_dssp CSCEEEEEECTTCC---EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT------------
T ss_pred cCCceEEEECCCCC---EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC------------
Confidence 35789999999987 66776666 4688888877765432210
Q ss_pred CCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee---------cCCCCCeeE
Q 048801 383 VPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL---------SGHENDVNY 453 (1715)
Q Consensus 383 ~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l---------~gH~~~V~s 453 (1715)
.+-.....++++++|+++++...++.|++|+..... ..+..+ .++......
T Consensus 88 ------------~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~--------~~~~~~~~~~~~g~~~~~~~~P~~ 147 (329)
T 3fvz_A 88 ------------NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE--------GPLLILGRSMQPGSDQNHFCQPTD 147 (329)
T ss_dssp ------------TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS--------CCSEEESBTTBCCCSTTCCSSEEE
T ss_pred ------------CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe--------EEEEEecccCCCCCCccccCCCcE
Confidence 112347899999999999999889999999985431 012222 244557889
Q ss_pred EEEcc-CcccccccccccccccccccccCCcccCceEEEEc-CCCeEEEEecCCCccCcccccccccccccCCCCCCCCC
Q 048801 454 VQFSG-CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531 (1715)
Q Consensus 454 Lafsp-dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~ 531 (1715)
|+++| ++ .++++.+ .++.|++|+.. +.....++....
T Consensus 148 ia~~~~~g--------------------------~lyv~d~~~~~~I~~~~~~-g~~~~~~~~~g~-------------- 186 (329)
T 3fvz_A 148 VAVEPSTG--------------------------AVFVSDGYCNSRIVQFSPS-GKFVTQWGEESS-------------- 186 (329)
T ss_dssp EEECTTTC--------------------------CEEEEECSSCCEEEEECTT-SCEEEEECEECC--------------
T ss_pred EEEeCCCC--------------------------eEEEEeCCCCCeEEEEcCC-CCEEEEeccCCC--------------
Confidence 99998 54 6777776 69999999954 332211110000
Q ss_pred CCCCCCcccccCCCCCeeEEEeCCC-CCEEEEEecCCeEEEEECCCCceEEEEe--cCCCCeEEEEEccCCCcEEEEEe-
Q 048801 532 PPRGGPRQRLLPTPRGVNMIVWSLD-NRFVLAAIMDCRICVWNAVDGSLVHSLT--GHSASSYVLDVHPFNPRIAMSAG- 607 (1715)
Q Consensus 532 ~~~g~~~~~l~~h~~~VtslafSPD-G~~LaTgs~DGtI~IWDl~sg~~l~tL~--gH~~~V~sLafSP~dg~lLaSgs- 607 (1715)
+ ......+-.....|+++|+ |.++++...++.|++|+..+|+.+..+. .+...+.+++|+| +.++++.+
T Consensus 187 ---~--~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~ 259 (329)
T 3fvz_A 187 ---G--SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP--GFLFAVNGK 259 (329)
T ss_dssp ---S--SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET--TEEEEEECC
T ss_pred ---C--CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC--CEEEEeCCC
Confidence 0 0000112234789999998 7777888889999999999899998884 4667889999998 44444433
Q ss_pred ------CCCcEEEEECCCCceEEEEE---cccceEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 608 ------YDGRTIVWDIWEGTPIRIYE---IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 608 ------~DGtI~VWDl~tgk~l~tl~---~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
.+.+|++|++.+|+.+..+. .+...+..++|+|||.++++...++.|++|++.
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 34589999999999999884 445568899999999888888889999999975
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.8e-12 Score=160.79 Aligned_cols=300 Identities=12% Similarity=0.023 Sum_probs=207.5
Q ss_pred CCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecC--CCCCcceecCCC
Q 048801 295 SNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR--YSQYSPRIYLPK 372 (1715)
Q Consensus 295 pDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~--tg~~l~~i~~~~ 372 (1715)
+.+.++++...++.|.++|..+++.+..+.. ...+..+.|+|+++ +|++++.|+.|.+||+. +++.+..+..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr---~lyv~~~dg~V~viD~~~~t~~~v~~i~~-- 238 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGR---YLFVIGRDGKVNMIDLWMKEPTTVAEIKI-- 238 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSC---EEEEEETTSEEEEEETTSSSCCEEEEEEC--
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCC---EEEEEcCCCeEEEEECCCCCCcEeEEEec--
Confidence 4455677778899999999999999988874 34577999999998 77888899999999995 5554444322
Q ss_pred CCCCccCccCCCCCCCCCCCCCCCCcceeEEEEc----cCCCeEEEecC-CCeEEEEeCCCCCccCCCCCceeeeeec--
Q 048801 373 PPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYN----ANGTVFVTGSS-DTFARVWSACKSSVEDSEQPIHELDVLS-- 445 (1715)
Q Consensus 373 ~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafS----pdG~~LatGs~-DG~IrVWDl~t~~~~~~~~~~~~l~~l~-- 445 (1715)
......++|+ |+|++++++.. ++.|.|+|..+.+. ...+....
T Consensus 239 ------------------------G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~------~~~i~~~~~~ 288 (567)
T 1qks_A 239 ------------------------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP------KKIQSTRGMT 288 (567)
T ss_dssp ------------------------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE------EEEEECCEEC
T ss_pred ------------------------CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE------EEEEeccccc
Confidence 2235789999 69998877765 58999999877542 11111110
Q ss_pred -----CC-CCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccc
Q 048801 446 -----GH-ENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAY 519 (1715)
Q Consensus 446 -----gH-~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~ 519 (1715)
.| ...+..+.+++++ ...++....+|.|.++|..+.....
T Consensus 289 ~~~~~~~p~~rva~i~~s~~~-------------------------~~~vv~~~~~g~v~~vd~~~~~~~~--------- 334 (567)
T 1qks_A 289 YDEQEYHPEPRVAAILASHYR-------------------------PEFIVNVKETGKILLVDYTDLNNLK--------- 334 (567)
T ss_dssp TTTCCEESCCCEEEEEECSSS-------------------------SEEEEEETTTTEEEEEETTCSSEEE---------
T ss_pred cccccccCCCceEEEEEcCCC-------------------------CEEEEEecCCCeEEEEecCCCccce---------
Confidence 01 1256677777654 3567777888999999987532000
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCceEEEEec-----CCCCeEEE
Q 048801 520 HLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSLVHSLTG-----HSASSYVL 593 (1715)
Q Consensus 520 ~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~~l~tL~g-----H~~~V~sL 593 (1715)
............+.|+|+|++|+++. .++.|.++|+.+++++..+.. |.+.-..+
T Consensus 335 -------------------v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~ 395 (567)
T 1qks_A 335 -------------------TTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF 395 (567)
T ss_dssp -------------------EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE
T ss_pred -------------------eeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee
Confidence 00011223466789999999987766 578999999999998877754 43322222
Q ss_pred EEccCCCcEEEEEe-CCCcEEEEECCC-------CceEEEEEcccceEEEEEEcCCCCEEEEEeC-------CCeEEEEE
Q 048801 594 DVHPFNPRIAMSAG-YDGRTIVWDIWE-------GTPIRIYEIGRFKLVDGKFSPDGTSIVLSDD-------VGQIYLLN 658 (1715)
Q Consensus 594 afSP~dg~lLaSgs-~DGtI~VWDl~t-------gk~l~tl~~h~~~V~svafSPDG~~LAsgs~-------DG~I~IWd 658 (1715)
++|+++.+++++. .++.|.|+|..+ .+.++++......-..+.++|++++|.+... .+.|.|||
T Consensus 396 -~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 396 -VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred -ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 5785566666654 568999999988 6788888865444345778999999998763 46999999
Q ss_pred CCCC-----c----ccc-----------ccccceeecCCCccEEEc
Q 048801 659 TGQG-----E----SQK-----------DAKYDQFFLGDYRPLIRD 684 (1715)
Q Consensus 659 l~tG-----e----~~k-----------~~~~~~~fs~D~r~L~~d 684 (1715)
+.+. . .+. ..+....|.+||+.|.+.
T Consensus 475 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s 520 (567)
T 1qks_A 475 IKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFS 520 (567)
T ss_dssp GGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEE
T ss_pred CCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEE
Confidence 9866 1 111 112344688888877654
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-10 Score=134.80 Aligned_cols=283 Identities=8% Similarity=0.012 Sum_probs=196.5
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEE-ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLAS-CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG 317 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~t-L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg 317 (1715)
+..+...+.+++++++|+++++...++.|.+||.. +..... +..+...+.+++++++|.++++...++.|..|+.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 45566789999999999988877668899999988 654432 23356789999999999988887778899999976 4
Q ss_pred CceEEEe--CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCC
Q 048801 318 LPISVLR--GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL 395 (1715)
Q Consensus 318 ~~l~~L~--gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~ 395 (1715)
. +..+. .....+.++++.+++. ++++...++.|.+||. ++... .+..+ .
T Consensus 88 ~-~~~~~~~~~~~~~~~i~~~~~g~---l~v~~~~~~~i~~~d~-~g~~~-~~~~~-----------------------~ 138 (299)
T 2z2n_A 88 I-IKEYTLPNPDSAPYGITEGPNGD---IWFTEMNGNRIGRITD-DGKIR-EYELP-----------------------N 138 (299)
T ss_dssp C-EEEEECSSTTCCEEEEEECTTSC---EEEEETTTTEEEEECT-TCCEE-EEECS-----------------------S
T ss_pred c-EEEEeCCCcCCCceeeEECCCCC---EEEEecCCceEEEECC-CCCEE-EecCC-----------------------C
Confidence 3 33332 3456789999999886 6666667889999998 54432 11110 0
Q ss_pred CCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccc
Q 048801 396 QSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 396 h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
....+.++++.++|.++++...++.|.+|+. +++. .. ..+..+...+..+++.+++
T Consensus 139 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-------~~-~~~~~~~~~~~~i~~~~~g--------------- 194 (299)
T 2z2n_A 139 KGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI-------TE-FKIPTPASGPVGITKGNDD--------------- 194 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE-------EE-EECSSTTCCEEEEEECTTS---------------
T ss_pred CCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE-------EE-eeCCCCCCcceeEEECCCC---------------
Confidence 1234789999999988888777889999998 5432 11 1123344567888888875
Q ss_pred cccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC
Q 048801 476 VPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL 555 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP 555 (1715)
..+++...++.|.+|+. ++.... +. .......+.++++++
T Consensus 195 -----------~l~v~~~~~~~i~~~~~-~g~~~~--------~~--------------------~~~~~~~~~~i~~~~ 234 (299)
T 2z2n_A 195 -----------ALWFVEIIGNKIGRITT-SGEITE--------FK--------------------IPTPNARPHAITAGA 234 (299)
T ss_dssp -----------SEEEEETTTTEEEEECT-TCCEEE--------EE--------------------CSSTTCCEEEEEECS
T ss_pred -----------CEEEEccCCceEEEECC-CCcEEE--------EE--------------------CCCCCCCceeEEECC
Confidence 56666667889999988 433110 00 011234688999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEE-EecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC
Q 048801 556 DNRFVLAAIMDCRICVWNAVDGSLVHS-LTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl~sg~~l~t-L~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
+|+++++...++.|.+|+. +++.... +..+...+.++++ + ++.++++.. .+.|..++..++
T Consensus 235 ~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~-~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 235 GIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-D-GETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp TTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-C-SSCEEEEET-TTEEEEEEEC--
T ss_pred CCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-c-CCCEEEEec-CCcEEEEEcCcc
Confidence 9997776667889999998 5543322 2345567899999 6 677766554 567777777654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.2e-12 Score=165.57 Aligned_cols=294 Identities=9% Similarity=0.013 Sum_probs=189.8
Q ss_pred CCCCEEEEEeCC-----CcEEEEeCCCCcEEEEe------cCCCCCeEEEEECCCCCEEEEEeCCC-----eeEEEECCC
Q 048801 253 RSGRFVITGSDD-----RLVKIWSMETAFCLASC------RGHEGDITDLAVSSNNTLVASASNDF-----VIRVWRLPD 316 (1715)
Q Consensus 253 pDG~~LaTGS~D-----GtIrIWDl~tgk~l~tL------~gHs~~VtsLafSpDg~lLASGS~DG-----tIrVWDl~t 316 (1715)
|+|++++....+ +.|.+.+..++.....+ .+|...+..++|||||++||.++.++ .|+|||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 788887765432 23455555455433222 23445688999999999999876543 899999999
Q ss_pred CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCc----------------EEEEecCCCCCcceecCCCCCCCccCc
Q 048801 317 GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT----------------CRIWDARYSQYSPRIYLPKPPDAITGK 380 (1715)
Q Consensus 317 g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGt----------------VrIWDl~tg~~l~~i~~~~~~~~i~g~ 380 (1715)
++.+.....+ ..+.+++|+||++ .|+.++.++. |++|++.+++....+....
T Consensus 161 g~~~~~~~~~-~~~~~~~wspDg~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~-------- 228 (710)
T 2xdw_A 161 AKELPDVLER-VKFSCMAWTHDGK---GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF-------- 228 (710)
T ss_dssp TEEEEEEEEE-ECSCCEEECTTSS---EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC--------
T ss_pred CCCCcccccC-cccceEEEEeCCC---EEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEecc--------
Confidence 9876643322 2367899999998 6777776655 9999998765322211100
Q ss_pred cCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-----CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEE
Q 048801 381 SNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-----DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455 (1715)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-----DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLa 455 (1715)
..+...+..++|+|||++|+.++. +..|++||+.+... ..........+..+...+.. .
T Consensus 229 -------------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~--~~~~~~~~~~l~~~~~~~~~-~ 292 (710)
T 2xdw_A 229 -------------PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN--GITGILKWVKLIDNFEGEYD-Y 292 (710)
T ss_dssp -------------TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS--SSCSSCCCEEEECSSSSCEE-E
T ss_pred -------------CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccc--ccCCccceEEeeCCCCcEEE-E
Confidence 112334678999999999887764 56899999875100 00000123444555555544 4
Q ss_pred EccCcccccccccccccccccccccCCcccCceEEEEcC----CCeEEEEecCCCccCcccccccccccccCCCCCCCCC
Q 048801 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR----DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531 (1715)
Q Consensus 456 fspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~----DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~ 531 (1715)
|++++ +.|+..+. .+.|.+|++.++.. ..|
T Consensus 293 ~s~dg--------------------------~~l~~~s~~~~~~~~l~~~d~~~~~~----~~~---------------- 326 (710)
T 2xdw_A 293 VTNEG--------------------------TVFTFKTNRHSPNYRLINIDFTDPEE----SKW---------------- 326 (710)
T ss_dssp EEEET--------------------------TEEEEEECTTCTTCEEEEEETTSCCG----GGC----------------
T ss_pred EeccC--------------------------CEEEEEECCCCCCCEEEEEeCCCCCc----ccc----------------
Confidence 66665 34443333 33688998875320 001
Q ss_pred CCCCCCcccccCCCC--CeeEEEeCCCCCEEEEEecCCe--EEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEe
Q 048801 532 PPRGGPRQRLLPTPR--GVNMIVWSLDNRFVLAAIMDCR--ICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607 (1715)
Q Consensus 532 ~~~g~~~~~l~~h~~--~VtslafSPDG~~LaTgs~DGt--I~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs 607 (1715)
..+..+.. .+..++|++++.++++...++. |++|++.+|+.+..+..+.+.|..+.++|++..++++.+
T Consensus 327 -------~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~s 399 (710)
T 2xdw_A 327 -------KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFT 399 (710)
T ss_dssp -------EEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEE
T ss_pred -------eeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEe
Confidence 12222322 5778899988888888888884 667788788888888888888899999995556665544
Q ss_pred ---CCCcEEEEECCCCce-EEEEE
Q 048801 608 ---YDGRTIVWDIWEGTP-IRIYE 627 (1715)
Q Consensus 608 ---~DGtI~VWDl~tgk~-l~tl~ 627 (1715)
..++|++||+.+++. +..+.
T Consensus 400 s~~~P~~i~~~d~~tg~~~~~~l~ 423 (710)
T 2xdw_A 400 SFLSPGIIYHCDLTKEELEPRVFR 423 (710)
T ss_dssp CSSCCCEEEEEETTSSSCCCEEEE
T ss_pred CCCCCCEEEEEECCCCccceEEee
Confidence 357899999988873 33343
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-12 Score=152.50 Aligned_cols=258 Identities=11% Similarity=0.078 Sum_probs=169.9
Q ss_pred CCeEEEEECCCCCEEEEEe---------CCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCC---C-
Q 048801 286 GDITDLAVSSNNTLVASAS---------NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD---G- 352 (1715)
Q Consensus 286 ~~VtsLafSpDg~lLASGS---------~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D---G- 352 (1715)
..+..+++ ||++||... .++.|.+|++.++... .+ ..+.+++|+|++. .|+.++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~---~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGK---KIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSS---EEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCC---EEEEEEeccCCCc
Confidence 45677778 888887652 2568999999888753 34 5688999999998 56655433 3
Q ss_pred -cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC-------------
Q 048801 353 -TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD------------- 418 (1715)
Q Consensus 353 -tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D------------- 418 (1715)
.|.+|++.+++...... ... +.+++|+|+|+.|+.++.+
T Consensus 85 ~~l~~~~~~~g~~~~l~~--------------------------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 85 SEIWVADLETLSSKKILE--------------------------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp EEEEEEETTTTEEEEEEE--------------------------ESE-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred ceEEEEECCCCceEEEEc--------------------------CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence 37778887665322211 122 7899999999988887632
Q ss_pred --------------CeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcc
Q 048801 419 --------------TFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWF 484 (1715)
Q Consensus 419 --------------G~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~ 484 (1715)
..|.+|++.+++ .+..+.. . .+..+.|+|++
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~---------~~~~l~~-~-~~~~~~~spdg------------------------ 182 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEE---------VIEEFEK-P-RFSSGIWHRDK------------------------ 182 (347)
T ss_dssp CCC---------CEEEEEEEETTTTE---------EEEEEEE-E-TTCEEEEETTE------------------------
T ss_pred ceeecCcccccCccceEEEEECCCCe---------EEeeecC-C-CcccccCCCCe------------------------
Confidence 578889987642 1122222 2 67888999874
Q ss_pred cCceEEEEcCC------C-eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 485 CHDNIVTCSRD------G-SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 485 ~~~~LaSgS~D------G-sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
.++++..+ . ...||.+.++. ...+..+ ..+.. ++|||
T Consensus 183 ---~~~~~~~~~~~~~~~~~~~l~~~d~~~------------------------------~~~l~~~-~~~~~--~spdg 226 (347)
T 2gop_A 183 ---IVVNVPHREIIPQYFKFWDIYIWEDGK------------------------------EEKMFEK-VSFYA--VDSDG 226 (347)
T ss_dssp ---EEEEEECCCSSCCSSCCEEEEEEETTE------------------------------EEEEEEE-ESEEE--EEECS
T ss_pred ---EEEEEecccccccccccccEEEeCCCc------------------------------eEEeccC-cceee--ECCCC
Confidence 44444333 1 33444333221 0111112 23333 39999
Q ss_pred CEEEEEecC--------CeEEEEECCCCceEEEEecCCCCeEE-EEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEc
Q 048801 558 RFVLAAIMD--------CRICVWNAVDGSLVHSLTGHSASSYV-LDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEI 628 (1715)
Q Consensus 558 ~~LaTgs~D--------GtI~IWDl~sg~~l~tL~gH~~~V~s-LafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~ 628 (1715)
++|+.++.+ ..|++|| +++....+.+|...+.. +.|+ + + ++++++.++.++|| +.+++....+ .
T Consensus 227 ~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-d-g-~~~~~~~~~~~~l~-~~~g~~~~~~-~ 299 (347)
T 2gop_A 227 ERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-G-K-VYFTLFEEGSVNLY-IWDGEIKPIA-K 299 (347)
T ss_dssp SCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-T-E-EEEEEEETTEEEEE-EESSSEEEEE-C
T ss_pred CEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-C-c-EEEEEecCCcEEEE-EcCCceEEEe-c
Confidence 999887754 3688888 66655545566777886 8998 4 4 88899999999999 8877664444 4
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeE-EEEECC
Q 048801 629 GRFKLVDGKFSPDGTSIVLSDDVGQI-YLLNTG 660 (1715)
Q Consensus 629 h~~~V~svafSPDG~~LAsgs~DG~I-~IWdl~ 660 (1715)
+...|.+++|+| .++++++.++.. .||.+.
T Consensus 300 ~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 300 GRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp SSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 577899999999 677777766654 666654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=9.1e-12 Score=163.98 Aligned_cols=248 Identities=12% Similarity=0.034 Sum_probs=172.9
Q ss_pred CCCCeEEEEecCCCCcceEEEEecCC-C----cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 326 HTGAVTAIAFSPRPSAIYQLLSSSDD-G----TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 326 H~~~VtsLafSPdg~~~~~LaSgS~D-G----tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
|...+..++|||+++ +|+.+..+ | .|++||+.+++...... ....+
T Consensus 123 ~~~~~~~~~~SPDg~---~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~--------------------------~~~~~ 173 (710)
T 2xdw_A 123 GTVALRGYAFSEDGE---YFAYGLSASGSDWVTIKFMKVDGAKELPDVL--------------------------ERVKF 173 (710)
T ss_dssp SCEEEEEEEECTTSS---EEEEEEEETTCSCEEEEEEETTTTEEEEEEE--------------------------EEECS
T ss_pred CCEEEEEEEECCCCC---EEEEEEcCCCCceEEEEEEECCCCCCCcccc--------------------------cCccc
Confidence 444688999999998 55544332 2 89999999887543210 01125
Q ss_pred eEEEEccCCCeEEEecCCCe----------------EEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccc
Q 048801 401 LCCAYNANGTVFVTGSSDTF----------------ARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASR 464 (1715)
Q Consensus 401 tslafSpdG~~LatGs~DG~----------------IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~ 464 (1715)
..++|+|||+.|+.++.++. |++|++.++... ...+.....|...+..+.|+|++
T Consensus 174 ~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~-----~~~v~~~~~~~~~~~~~~~SpDg---- 244 (710)
T 2xdw_A 174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSE-----DILCAEFPDEPKWMGGAELSDDG---- 244 (710)
T ss_dssp CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGG-----CEEEECCTTCTTCEEEEEECTTS----
T ss_pred ceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCccc-----ceEEeccCCCCeEEEEEEEcCCC----
Confidence 67999999999998887765 999999765310 01222223355567899999987
Q ss_pred ccccccccccccccccCCcccCceEEEEcC-----CCeEEEEecCC------CccCcccccccccccccCCCCCCCCCCC
Q 048801 465 SAMSDAFKEENVPKFKNSWFCHDNIVTCSR-----DGSAIIWIPRS------RRSHGKVGRWTRAYHLKVPPPPLPPQPP 533 (1715)
Q Consensus 465 ~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~-----DGsIrIWDl~t------~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 533 (1715)
+.|+.++. +..|.+||+.+ +..
T Consensus 245 ----------------------~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~------------------------- 277 (710)
T 2xdw_A 245 ----------------------RYVLLSIREGCDPVNRLWYCDLQQESNGITGIL------------------------- 277 (710)
T ss_dssp ----------------------CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-------------------------
T ss_pred ----------------------CEEEEEEEccCCCccEEEEEECcccccccCCcc-------------------------
Confidence 56665543 56899998874 210
Q ss_pred CCCCcccccCCCCCeeEEEeCCCCCEEEEEecC----CeEEEEECCCCc--eEEEEecCCC--CeEEEEEccCCCcEEEE
Q 048801 534 RGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD----CRICVWNAVDGS--LVHSLTGHSA--SSYVLDVHPFNPRIAMS 605 (1715)
Q Consensus 534 ~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D----GtI~IWDl~sg~--~l~tL~gH~~--~V~sLafSP~dg~lLaS 605 (1715)
....+..+...+.. .|+++|..|+..+.. +.|.+|++.++. ....+..|.. .+..++|++ ++.++++
T Consensus 278 ---~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~ 352 (710)
T 2xdw_A 278 ---KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR-SNFLVLC 352 (710)
T ss_dssp ---CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET-TTEEEEE
T ss_pred ---ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc-CCEEEEE
Confidence 11222333334443 588999988877653 369999998875 2455666654 678899986 7788999
Q ss_pred EeCCCc--EEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEe----CCCeEEEEECCCCc
Q 048801 606 AGYDGR--TIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSD----DVGQIYLLNTGQGE 663 (1715)
Q Consensus 606 gs~DGt--I~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs----~DG~I~IWdl~tGe 663 (1715)
...|+. |.+|++.+|+.+..+..+.+.+..++++|++..|+.+. ..+.|++||+.+|+
T Consensus 353 ~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 353 YLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 988884 56678778888888887777888999999998777542 34799999998887
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-11 Score=143.27 Aligned_cols=268 Identities=9% Similarity=-0.008 Sum_probs=178.0
Q ss_pred CcEEEEecCCCCCeEEEEECCCCC-EEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCc
Q 048801 275 AFCLASCRGHEGDITDLAVSSNNT-LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT 353 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSpDg~-lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGt 353 (1715)
+..+..+..+.....+++|+|+|+ +++++..++.|.+|+..++ ...+..+...+.+++|++++. ++++...++.
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~---l~v~~~~~~~ 91 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGH---LIACSHGLRR 91 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCC---EEEEETTTTE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCc---EEEEecCCCe
Confidence 344455666677788999999998 7888888999999999877 677777888899999999987 6677777789
Q ss_pred EEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccC
Q 048801 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVED 433 (1715)
Q Consensus 354 VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~ 433 (1715)
|.+||..+++......... ......+..++++|+|+++++.+..|....+....
T Consensus 92 i~~~d~~~g~~~~~~~~~~---------------------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~----- 145 (296)
T 3e5z_A 92 LERQREPGGEWESIADSFE---------------------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYG----- 145 (296)
T ss_dssp EEEECSTTCCEEEEECEET---------------------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSC-----
T ss_pred EEEEcCCCCcEEEEeeccC---------------------CCCCCCCCCEEECCCCCEEEECCcccccccccccc-----
Confidence 9999997776432211000 00122367899999999888743222110000000
Q ss_pred CCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc
Q 048801 434 SEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG 513 (1715)
Q Consensus 434 ~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~ 513 (1715)
.... ...+.|..++.. +.
T Consensus 146 ------------~~~~-------------------------------------------~~~~~l~~~~~~-g~------ 163 (296)
T 3e5z_A 146 ------------GEME-------------------------------------------LPGRWVFRLAPD-GT------ 163 (296)
T ss_dssp ------------CCCC-------------------------------------------SSSCEEEEECTT-SC------
T ss_pred ------------cccc-------------------------------------------CCCcEEEEECCC-CC------
Confidence 0000 000111111111 00
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECC-CCce---EEEEecCCCC
Q 048801 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV-DGSL---VHSLTGHSAS 589 (1715)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~-sg~~---l~tL~gH~~~ 589 (1715)
...+..+......++|+|+|+.|++.+.++.|++|++. ++.+ ...+..+...
T Consensus 164 ------------------------~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 219 (296)
T 3e5z_A 164 ------------------------LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGK 219 (296)
T ss_dssp ------------------------EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSC
T ss_pred ------------------------EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCC
Confidence 00011122345789999999999777778999999986 5655 3344445556
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEE-cCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 590 SYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKF-SPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 590 V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svaf-SPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
+.++++++ +++++++. ++.|.+|+.. |+.+..+..+.. +.+++| +|+++.|++++.+ .|+.++..+.+..
T Consensus 220 p~~i~~d~-~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 220 TDGLRVDA-GGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp CCSEEEBT-TSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred CCeEEECC-CCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 77899999 56666655 7899999985 888888887666 889999 6899999988875 5677777766543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-10 Score=133.32 Aligned_cols=283 Identities=10% Similarity=0.044 Sum_probs=195.1
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE-eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEec
Q 048801 281 CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL-RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359 (1715)
Q Consensus 281 L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L-~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl 359 (1715)
+..+...+.+++++++|+++++...++.|.+||.. +...... ..+...+.++++.+++. ++++...++.|..||.
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~---l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE---VWFTENAANKIGRITK 85 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC---EEEEETTTTEEEEECT
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC---EEEeCCCCCeEEEECC
Confidence 34456789999999999988877668899999987 5533322 23457799999999886 6666666888999987
Q ss_pred CCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCce
Q 048801 360 RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIH 439 (1715)
Q Consensus 360 ~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~ 439 (1715)
. +.. ..+..+ .....+.++++.++|.++++...++.|.+|+. ++.. .
T Consensus 86 ~-g~~-~~~~~~-----------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-------~ 132 (299)
T 2z2n_A 86 K-GII-KEYTLP-----------------------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI-------R 132 (299)
T ss_dssp T-SCE-EEEECS-----------------------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE-------E
T ss_pred C-CcE-EEEeCC-----------------------CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE-------E
Confidence 5 321 222111 01235789999999998888777889999998 4321 1
Q ss_pred eeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccc
Q 048801 440 ELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAY 519 (1715)
Q Consensus 440 ~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~ 519 (1715)
...+..+...+..+++.+++ ..+++...++.|.+||. +++... +
T Consensus 133 -~~~~~~~~~~~~~i~~~~~g--------------------------~l~v~~~~~~~i~~~~~-~g~~~~--------~ 176 (299)
T 2z2n_A 133 -EYELPNKGSYPSFITLGSDN--------------------------ALWFTENQNNAIGRITE-SGDITE--------F 176 (299)
T ss_dssp -EEECSSTTCCEEEEEECTTS--------------------------CEEEEETTTTEEEEECT-TCCEEE--------E
T ss_pred -EecCCCCCCCCceEEEcCCC--------------------------CEEEEeCCCCEEEEEcC-CCcEEE--------e
Confidence 11222344568888888875 56666667789999987 432110 0
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEE-EecCCCCeEEEEEccC
Q 048801 520 HLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHS-LTGHSASSYVLDVHPF 598 (1715)
Q Consensus 520 ~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~t-L~gH~~~V~sLafSP~ 598 (1715)
. .......+..++++++|.++++...++.|.+|+. +++.... +..+...+.++++++
T Consensus 177 ~--------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~- 234 (299)
T 2z2n_A 177 K--------------------IPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGA- 234 (299)
T ss_dssp E--------------------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-
T ss_pred e--------------------CCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECC-
Confidence 0 0112335788999999998777767889999999 7765432 233556789999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCceEEEEE--cccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 599 NPRIAMSAGYDGRTIVWDIWEGTPIRIYE--IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 599 dg~lLaSgs~DGtI~VWDl~tgk~l~tl~--~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
+++++++...++.|.+||. +++ +..+. .+...+.++++ ++|.+.++.. .+.|..++..++
T Consensus 235 ~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 235 GIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp TTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred CCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 5677766667889999998 554 33443 23456889999 8888777655 577888887655
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-11 Score=146.24 Aligned_cols=282 Identities=10% Similarity=-0.029 Sum_probs=191.7
Q ss_pred CCCcEEEEeCCCCcEEEEec------CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEec
Q 048801 263 DDRLVKIWSMETAFCLASCR------GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFS 336 (1715)
Q Consensus 263 ~DGtIrIWDl~tgk~l~tL~------gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafS 336 (1715)
.++.|.+||.++++....+. .......++++. +++++++...++.|.+||..+++.+..+. .......++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 38899999999998766542 122346778874 45566666668999999999999988886 45678999999
Q ss_pred CCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec
Q 048801 337 PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS 416 (1715)
Q Consensus 337 Pdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs 416 (1715)
+++. .+++...++.|.+||..+++....+...... ........+++ .++.++++..
T Consensus 93 ~~g~---lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~--------------------~~~~~p~~i~~-~~~~lyv~~~ 148 (328)
T 3dsm_A 93 SDEK---AYVTQIWDYRIFIINPKTYEITGYIECPDMD--------------------MESGSTEQMVQ-YGKYVYVNCW 148 (328)
T ss_dssp ETTE---EEEEEBSCSEEEEEETTTTEEEEEEECTTCC--------------------TTTCBCCCEEE-ETTEEEEEEC
T ss_pred CCCe---EEEEECCCCeEEEEECCCCeEEEEEEcCCcc--------------------ccCCCcceEEE-ECCEEEEEcC
Confidence 8873 4555547899999999988766555432100 00112345666 4555555544
Q ss_pred -CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC
Q 048801 417 -SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD 495 (1715)
Q Consensus 417 -~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D 495 (1715)
.++.|.+||+.+++. +..+.. ......+++++++ .+++++..+
T Consensus 149 ~~~~~v~viD~~t~~~---------~~~i~~-g~~p~~i~~~~dG--------------------------~l~v~~~~~ 192 (328)
T 3dsm_A 149 SYQNRILKIDTETDKV---------VDELTI-GIQPTSLVMDKYN--------------------------KMWTITDGG 192 (328)
T ss_dssp TTCCEEEEEETTTTEE---------EEEEEC-SSCBCCCEECTTS--------------------------EEEEEBCCB
T ss_pred CCCCEEEEEECCCCeE---------EEEEEc-CCCccceEEcCCC--------------------------CEEEEECCC
Confidence 488999999987542 222222 1234567777765 455555444
Q ss_pred ----------CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec
Q 048801 496 ----------GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM 565 (1715)
Q Consensus 496 ----------GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~ 565 (1715)
+.|.++|..+++....+ . .........++|+|++++|+++..
T Consensus 193 ~~~~~~~~~~~~v~~id~~t~~v~~~~-------~---------------------~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 193 YEGSPYGYEAPSLYRIDAETFTVEKQF-------K---------------------FKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp CTTCSSCBCCCEEEEEETTTTEEEEEE-------E---------------------CCTTCCCEEEEECTTSCEEEEESS
T ss_pred ccCCccccCCceEEEEECCCCeEEEEE-------e---------------------cCCCCCceeEEEecCCCEEEEEcc
Confidence 78999998865422111 0 001125788999999999988754
Q ss_pred CCeEEEEECCCCceEEE--EecCCCCeEEEEEccCCCcEEEEE----eCCCcEEEEECCCCceEEEEEcccceEEEEEE
Q 048801 566 DCRICVWNAVDGSLVHS--LTGHSASSYVLDVHPFNPRIAMSA----GYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKF 638 (1715)
Q Consensus 566 DGtI~IWDl~sg~~l~t--L~gH~~~V~sLafSP~dg~lLaSg----s~DGtI~VWDl~tgk~l~tl~~h~~~V~svaf 638 (1715)
.|.+||+.+++.... +..+.....+++++|++++++++. ..++.|.+||.. |+.+..+..+..+ ..++|
T Consensus 245 --~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P-~~~~~ 319 (328)
T 3dsm_A 245 --DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIP-GAFCW 319 (328)
T ss_dssp --SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESE-EEEEE
T ss_pred --EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCc-ceEEE
Confidence 899999988876421 222245688999999788888887 678999999997 9999988754432 34444
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-12 Score=167.83 Aligned_cols=280 Identities=10% Similarity=-0.021 Sum_probs=180.8
Q ss_pred cCCCCEEEEEeCCC---c--EEEEeCCCCcEEEEec------CCCCCeEEEEECCCCCEEEE-----EeCCCeeEEEECC
Q 048801 252 DRSGRFVITGSDDR---L--VKIWSMETAFCLASCR------GHEGDITDLAVSSNNTLVAS-----ASNDFVIRVWRLP 315 (1715)
Q Consensus 252 SpDG~~LaTGS~DG---t--IrIWDl~tgk~l~tL~------gHs~~VtsLafSpDg~lLAS-----GS~DGtIrVWDl~ 315 (1715)
+|+|.+++....++ . |.+.+...+.....+. +|...+.+++|||||++||. |+.+.+|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 37888887766543 3 4444544554433332 45567999999999999984 4445789999999
Q ss_pred CCCceEEEeCCCCCe--EEEEecCCCCcceEEEEecCCCc-------------EEEEecCCCCCcceecCCCCCCCccCc
Q 048801 316 DGLPISVLRGHTGAV--TAIAFSPRPSAIYQLLSSSDDGT-------------CRIWDARYSQYSPRIYLPKPPDAITGK 380 (1715)
Q Consensus 316 tg~~l~~L~gH~~~V--tsLafSPdg~~~~~LaSgS~DGt-------------VrIWDl~tg~~l~~i~~~~~~~~i~g~ 380 (1715)
+++.+. ..+...+ ..++|+|+++ .|+.++.|.. |++|++.++.....+....
T Consensus 156 tg~~~~--~~~~~~~~~~~~~wspDg~---~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~-------- 222 (695)
T 2bkl_A 156 SGEWSK--VDVIEGGKYATPKWTPDSK---GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER-------- 222 (695)
T ss_dssp TCCBCS--SCCBSCCTTCCCEECTTSS---EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC--------
T ss_pred CCCCcC--CcccCcccccceEEecCCC---EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec--------
Confidence 998651 1122222 6899999998 7788777766 9999998776322211100
Q ss_pred cCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC----eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEE
Q 048801 381 SNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT----FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF 456 (1715)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG----~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLaf 456 (1715)
..+...+.+++|+|||++|+.++.++ .|.+|+..++. ...+..+...+....+
T Consensus 223 -------------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~----------~~~l~~~~~~~~~~~~ 279 (695)
T 2bkl_A 223 -------------TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD----------FRLLVKGVGAKYEVHA 279 (695)
T ss_dssp -------------CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS----------CEEEEECSSCCEEEEE
T ss_pred -------------CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc----------eEEeecCCCceEEEEe
Confidence 11234578999999999988877665 56666543321 2334445555555555
Q ss_pred ccCcccccccccccccccccccccCCcccCceEEEEc---CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCC
Q 048801 457 SGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS---RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPP 533 (1715)
Q Consensus 457 spdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS---~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 533 (1715)
+++ .+++++. .++.|.+|++.++.. ..|
T Consensus 280 -~~g--------------------------~l~~~s~~~~~~~~l~~~d~~~~~~----~~~------------------ 310 (695)
T 2bkl_A 280 -WKD--------------------------RFYVLTDEGAPRQRVFEVDPAKPAR----ASW------------------ 310 (695)
T ss_dssp -ETT--------------------------EEEEEECTTCTTCEEEEEBTTBCSG----GGC------------------
T ss_pred -cCC--------------------------cEEEEECCCCCCCEEEEEeCCCCCc----cCC------------------
Confidence 444 3444443 358899999875321 001
Q ss_pred CCCCcccccCC--CCCeeEEEeCCCCCEEEEEecCCeEEEEECC-CCceEEEEecC-CCCeEEEEEccCCCcEEEEEeC-
Q 048801 534 RGGPRQRLLPT--PRGVNMIVWSLDNRFVLAAIMDCRICVWNAV-DGSLVHSLTGH-SASSYVLDVHPFNPRIAMSAGY- 608 (1715)
Q Consensus 534 ~g~~~~~l~~h--~~~VtslafSPDG~~LaTgs~DGtI~IWDl~-sg~~l~tL~gH-~~~V~sLafSP~dg~lLaSgs~- 608 (1715)
..+..+ ...+..++|+ ++.++++...|+..+||.+. +++.+..+..+ .+.|..++++|++..++++.+.
T Consensus 311 -----~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~ 384 (695)
T 2bkl_A 311 -----KEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSF 384 (695)
T ss_dssp -----EEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEET
T ss_pred -----eEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCC
Confidence 111112 3357778888 77888889999988887654 46666777655 6677888899955555555443
Q ss_pred --CCcEEEEECCCCce
Q 048801 609 --DGRTIVWDIWEGTP 622 (1715)
Q Consensus 609 --DGtI~VWDl~tgk~ 622 (1715)
.++|++||+.+++.
T Consensus 385 ~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 385 TTPRQIYKTSVSTGKS 400 (695)
T ss_dssp TEEEEEEEEETTTCCE
T ss_pred CCCCEEEEEECCCCcE
Confidence 47899999988874
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.1e-12 Score=164.67 Aligned_cols=277 Identities=12% Similarity=0.034 Sum_probs=180.1
Q ss_pred CCCCEEEEEeCCC---eeEEE--ECCCCCceEEEe------CCCCCeEEEEecCCCCcceEEE-----EecCCCcEEEEe
Q 048801 295 SNNTLVASASNDF---VIRVW--RLPDGLPISVLR------GHTGAVTAIAFSPRPSAIYQLL-----SSSDDGTCRIWD 358 (1715)
Q Consensus 295 pDg~lLASGS~DG---tIrVW--Dl~tg~~l~~L~------gH~~~VtsLafSPdg~~~~~La-----SgS~DGtVrIWD 358 (1715)
|+|.+++....++ .-.|| +...+.....+. +|...+.+++|||+++ +|+ .|+.+..|++||
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~---~la~~~~~~G~~~~~i~v~d 153 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGK---KVAFAQKPNAADEAVLHVID 153 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSS---EEEEEEEETTCSCCEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCC---EEEEEECCCCCceEEEEEEE
Confidence 6777776665443 23344 444444433332 3555789999999998 555 444567899999
Q ss_pred cCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCe-------------EEEEe
Q 048801 359 ARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTF-------------ARVWS 425 (1715)
Q Consensus 359 l~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~-------------IrVWD 425 (1715)
+.+++.+.... + .......++|+|||+.|+.++.+.. |++|+
T Consensus 154 l~tg~~~~~~~-------~------------------~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~ 208 (695)
T 2bkl_A 154 VDSGEWSKVDV-------I------------------EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHT 208 (695)
T ss_dssp TTTCCBCSSCC-------B------------------SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEE
T ss_pred CCCCCCcCCcc-------c------------------CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEE
Confidence 99887431000 0 0111257899999999999888765 99999
Q ss_pred CCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC----eEEEE
Q 048801 426 ACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG----SAIIW 501 (1715)
Q Consensus 426 l~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG----sIrIW 501 (1715)
+.++... ...+.....|...+..+.|+|++ +.|+.++.++ .|.+|
T Consensus 209 l~t~~~~-----~~lv~~~~~~~~~~~~~~~SpDG--------------------------~~l~~~~~~~~~~~~l~~~ 257 (695)
T 2bkl_A 209 LGTEPSK-----DTVVHERTGDPTTFLQSDLSRDG--------------------------KYLFVYILRGWSENDVYWK 257 (695)
T ss_dssp TTSCGGG-----CEEEECCCCCTTCEEEEEECTTS--------------------------CCEEEEEEETTTEEEEEEE
T ss_pred CCCCchh-----ceEEEecCCCCEEEEEEEECCCC--------------------------CEEEEEEeCCCCceEEEEE
Confidence 9875310 12333344455678899999987 5666655544 45555
Q ss_pred ecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec----CCeEEEEECCCC
Q 048801 502 IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM----DCRICVWNAVDG 577 (1715)
Q Consensus 502 Dl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~----DGtI~IWDl~sg 577 (1715)
+..++ ....+..+...+....+ ++|. |+..+. ++.|.+|++.++
T Consensus 258 ~~~~~------------------------------~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~ 305 (695)
T 2bkl_A 258 RPGEK------------------------------DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP 305 (695)
T ss_dssp CTTCS------------------------------SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC
T ss_pred cCCCC------------------------------ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC
Confidence 43321 11223333444555666 6677 544443 578999999887
Q ss_pred ce--EEEEecC--CCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-CCceEEEEEcc-cceEEEEEEcCCCCEEEEEe--
Q 048801 578 SL--VHSLTGH--SASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW-EGTPIRIYEIG-RFKLVDGKFSPDGTSIVLSD-- 649 (1715)
Q Consensus 578 ~~--l~tL~gH--~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~-tgk~l~tl~~h-~~~V~svafSPDG~~LAsgs-- 649 (1715)
.. ...+..| ...+..++|+ ++.++++...|+..+||.+. +|..+..+..+ .+.+..++++||+..|+...
T Consensus 306 ~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss 383 (695)
T 2bkl_A 306 ARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTS 383 (695)
T ss_dssp SGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEE
T ss_pred CccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcC
Confidence 63 2344433 4457788886 57889999999998888664 46666666544 56677889999998887443
Q ss_pred --CCCeEEEEECCCCcc
Q 048801 650 --DVGQIYLLNTGQGES 664 (1715)
Q Consensus 650 --~DG~I~IWdl~tGe~ 664 (1715)
..+.|++||+.+|+.
T Consensus 384 ~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 384 FTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp TTEEEEEEEEETTTCCE
T ss_pred CCCCCEEEEEECCCCcE
Confidence 347899999988864
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-11 Score=139.58 Aligned_cols=248 Identities=9% Similarity=0.075 Sum_probs=170.4
Q ss_pred eeEEEEcCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 234 QNIKKLRGHRDAVYCAIFDRSGR-FVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 234 k~l~~L~GH~~~Vt~VafSpDG~-~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
..+..+..+.....+++|+|+|+ +++++..++.|.+|+..++ ...+..+...+.+++++++|+++++...++.|.+|
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQ 95 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEE
Confidence 34556667778889999999998 7788888999999999987 66777788889999999999988887778899999
Q ss_pred ECCCCCceEEEeCC----CCCeEEEEecCCCCcceEEEE----ec-------------CCCcEEEEecCCCCCcceecCC
Q 048801 313 RLPDGLPISVLRGH----TGAVTAIAFSPRPSAIYQLLS----SS-------------DDGTCRIWDARYSQYSPRIYLP 371 (1715)
Q Consensus 313 Dl~tg~~l~~L~gH----~~~VtsLafSPdg~~~~~LaS----gS-------------~DGtVrIWDl~tg~~l~~i~~~ 371 (1715)
|..+++........ ...+..++++|++. ++++ ++ ..+.|..++.. +.. ..+.
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~---l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~-- 168 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAPDGS---LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPI-- 168 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECTTSC---EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEE--
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECCCCC---EEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEee--
Confidence 99888755443321 23467899999987 5665 32 12345555543 321 1110
Q ss_pred CCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCC-CCCccCCCCCceeeeeecCCCCC
Q 048801 372 KPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSAC-KSSVEDSEQPIHELDVLSGHEND 450 (1715)
Q Consensus 372 ~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~-t~~~~~~~~~~~~l~~l~gH~~~ 450 (1715)
.+......++|+|+|+.|++.+.++.|.+|++. ++.+. .....+..+...
T Consensus 169 -----------------------~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~------~~~~~~~~~~~~ 219 (296)
T 3e5z_A 169 -----------------------RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE------YQGVHFTVEPGK 219 (296)
T ss_dssp -----------------------CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE------EEEEEECCSSSC
T ss_pred -----------------------cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc------CCCeEeeCCCCC
Confidence 012235789999999988888888999999986 22110 111222334556
Q ss_pred eeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCC
Q 048801 451 VNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPP 530 (1715)
Q Consensus 451 V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~ 530 (1715)
+..+++++++ .++++. ++.|.+|+... +
T Consensus 220 p~~i~~d~~G--------------------------~l~v~~--~~~v~~~~~~g-~----------------------- 247 (296)
T 3e5z_A 220 TDGLRVDAGG--------------------------LIWASA--GDGVHVLTPDG-D----------------------- 247 (296)
T ss_dssp CCSEEEBTTS--------------------------CEEEEE--TTEEEEECTTS-C-----------------------
T ss_pred CCeEEECCCC--------------------------CEEEEc--CCeEEEECCCC-C-----------------------
Confidence 6778888876 444544 88999998762 2
Q ss_pred CCCCCCCcccccCCCCCeeEEEe-CCCCCEEEEEecCCeEEEEECCCCce
Q 048801 531 QPPRGGPRQRLLPTPRGVNMIVW-SLDNRFVLAAIMDCRICVWNAVDGSL 579 (1715)
Q Consensus 531 ~~~~g~~~~~l~~h~~~Vtslaf-SPDG~~LaTgs~DGtI~IWDl~sg~~ 579 (1715)
....+..+.. +++++| +++++.|++++.+ .|..++..+.++
T Consensus 248 ------~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 248 ------ELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp ------EEEEEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred ------EEEEEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 1112222334 888999 6899999988876 455567666544
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.37 E-value=5.1e-10 Score=136.31 Aligned_cols=292 Identities=10% Similarity=-0.014 Sum_probs=187.0
Q ss_pred EcCCCCEEEEEeC--CC---cEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEe----------CCCeeEEEECC
Q 048801 251 FDRSGRFVITGSD--DR---LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASAS----------NDFVIRVWRLP 315 (1715)
Q Consensus 251 fSpDG~~LaTGS~--DG---tIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS----------~DGtIrVWDl~ 315 (1715)
..|+++++++... .. .|.+||..+++.+.++.....+ .++|+|||++|+++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 4577777776653 22 8899999999999888765554 999999999999886 36789999999
Q ss_pred CCCceEEEeCC-------CCCeEEEEecCCCCcceEEEEecC--CCcEEEEecCCCCCcce-ecCCCCCCCccCccCCCC
Q 048801 316 DGLPISVLRGH-------TGAVTAIAFSPRPSAIYQLLSSSD--DGTCRIWDARYSQYSPR-IYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 316 tg~~l~~L~gH-------~~~VtsLafSPdg~~~~~LaSgS~--DGtVrIWDl~tg~~l~~-i~~~~~~~~i~g~~~~~~ 385 (1715)
+++.+..+... ......++|+|+++ +|+++.. ++.|.++| .+++.+.. +..+
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~---~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-------------- 167 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNA---DLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-------------- 167 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCCC---EEEEEecCCCCeEEEEE-CCCCEEeEEcCCC--------------
Confidence 98888776532 12346899999998 5666553 57899999 88876544 3221
Q ss_pred CCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCe-eEEEEccCcccc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDV-NYVQFSGCAVAS 463 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V-~sLafspdg~as 463 (1715)
.|+.+.|++ ..+++.+.||.+.+++. +++...... ....+.+ ..++ ....+.+++
T Consensus 168 ---------------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~---~~~~~~~-~~p~~~~~~~~~~~--- 224 (373)
T 2mad_H 168 ---------------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGL---VGAMLTA-AQNLLTQPAQANKS--- 224 (373)
T ss_pred ---------------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEe---ccccccC-CcceeecceeEecC---
Confidence 124455554 45666777899999998 654310000 0000011 1111 112233332
Q ss_pred cccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccC
Q 048801 464 RSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLP 543 (1715)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~ 543 (1715)
..++..+..+.+.+.|+.+..... ...| .+. .........
T Consensus 225 -----------------------~~~~~~~~~~~v~vid~~~~~~~v-~~~~----~~~------------~~~~~~~~~ 264 (373)
T 2mad_H 225 -----------------------GRIVWPVYSGKILQADISAAGATN-KAPI----DAL------------SGGRKADTW 264 (373)
T ss_pred -----------------------CEEEEEcCCceEEEEeccCCcceE-eeee----eec------------CCcccccce
Confidence 233333467888888886532100 0000 000 000000111
Q ss_pred CCCCeeEEEeCCCCCEEEEEec----------CCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEe-CCCcE
Q 048801 544 TPRGVNMIVWSLDNRFVLAAIM----------DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG-YDGRT 612 (1715)
Q Consensus 544 h~~~VtslafSPDG~~LaTgs~----------DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs-~DGtI 612 (1715)
.+.+...++++++++.|+++.. .+.|.++|+.+++.+..+... ....+++|+|++..+++++. .++.|
T Consensus 265 ~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V 343 (373)
T 2mad_H 265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVL 343 (373)
T ss_pred ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeE
Confidence 2334556889999998887654 357999999999999988633 35789999995553666766 58999
Q ss_pred EEEECCCCceEEEE
Q 048801 613 IVWDIWEGTPIRIY 626 (1715)
Q Consensus 613 ~VWDl~tgk~l~tl 626 (1715)
.|||+.+++.+..+
T Consensus 344 ~ViD~~t~~vv~~i 357 (373)
T 2mad_H 344 HIYDAGAGDQDQST 357 (373)
T ss_pred EEEECCCCCEEeee
Confidence 99999999999884
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=9.2e-11 Score=142.49 Aligned_cols=308 Identities=11% Similarity=0.006 Sum_probs=198.5
Q ss_pred EEcCCCCEEEEEeC-----CCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEe----------CCCeeEEEEC
Q 048801 250 IFDRSGRFVITGSD-----DRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASAS----------NDFVIRVWRL 314 (1715)
Q Consensus 250 afSpDG~~LaTGS~-----DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS----------~DGtIrVWDl 314 (1715)
...|+++.++.... ++.|.+.|..+++.+.++.....+ . ++++|||++|++++ .++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 35689998888865 679999999999999998865555 4 99999999887775 3678999999
Q ss_pred CCCCceEEEeCCC-------CCeEEEEecCCCCcceEEEEec--CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 315 PDGLPISVLRGHT-------GAVTAIAFSPRPSAIYQLLSSS--DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 315 ~tg~~l~~L~gH~-------~~VtsLafSPdg~~~~~LaSgS--~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
.+++.+..+.-.. .....++|+|+++ +|+++. .++.|.++|+.+++.+.++..+.
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk---~lyVan~~~~~~VsVID~~t~~vv~tI~v~g------------- 180 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK---TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD------------- 180 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS---EEEEEECSSSCEEEEEETTTTEEEEEEECCS-------------
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCC---EEEEEEcCCCCeEEEEECCCCcEEEEEECCC-------------
Confidence 9999988875321 2456799999998 555554 37899999999998877764321
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCC-CCccCCCCCceeeeeecCCCCCee-EEEEc-cCccc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACK-SSVEDSEQPIHELDVLSGHENDVN-YVQFS-GCAVA 462 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t-~~~~~~~~~~~~l~~l~gH~~~V~-sLafs-pdg~a 462 (1715)
. ...+....+.+++.+.||.+.+.++.+ +++.. .....+..-..++. ...|. ++
T Consensus 181 --------------~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~-----~~~~~~~~~~~~~~~~~~~~~~d--- 237 (386)
T 3sjl_D 181 --------------C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-----THTEVFHPEDEFLINHPAYSQKA--- 237 (386)
T ss_dssp --------------E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEE-----EECCCCSCTTSCBCSCCEEETTT---
T ss_pred --------------c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEE-----eecceeccccccccccceeEcCC---
Confidence 0 112222345666777788888887754 22100 00000000001110 11222 22
Q ss_pred ccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccccc
Q 048801 463 SRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLL 542 (1715)
Q Consensus 463 s~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~ 542 (1715)
..++..+.+|.|.+.|+.+.... ....|.. +.. .....-
T Consensus 238 ------------------------G~~~~vs~~g~V~v~d~~~~~~~-v~~~~~~-~~~---------------~~~~~g 276 (386)
T 3sjl_D 238 ------------------------GRLVWPTYTGKIHQIDLSSGDAK-FLPAVEA-LTE---------------AERADG 276 (386)
T ss_dssp ------------------------TEEEEEBTTSEEEEEECTTSSCE-ECCCEES-SCH---------------HHHHTT
T ss_pred ------------------------CcEEEEeCCCEEEEEECCCCcce-eecceec-ccc---------------cccccc
Confidence 24444666899999998754310 0000000 000 000000
Q ss_pred CCCCCeeEEEeCCCCCEEEEEec----------CCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEE-EEEeCCCc
Q 048801 543 PTPRGVNMIVWSLDNRFVLAAIM----------DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIA-MSAGYDGR 611 (1715)
Q Consensus 543 ~h~~~VtslafSPDG~~LaTgs~----------DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lL-aSgs~DGt 611 (1715)
-...++..++++++++.|++... .+.|.+.|+.+++.+..+..- ..+++|++++++..+| ++...++.
T Consensus 277 ~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~ 355 (386)
T 3sjl_D 277 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKT 355 (386)
T ss_dssp EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTE
T ss_pred ccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCe
Confidence 01234445788999998888653 257999999999999988632 2578999999654344 44566999
Q ss_pred EEEEECCCCceEEEEEcccceEEEEEEcCC
Q 048801 612 TIVWDIWEGTPIRIYEIGRFKLVDGKFSPD 641 (1715)
Q Consensus 612 I~VWDl~tgk~l~tl~~h~~~V~svafSPD 641 (1715)
|.|+|..+++.++++... +.-..+.+++|
T Consensus 356 VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 356 LYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred EEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 999999999999999743 33445566665
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.36 E-value=9.6e-11 Score=133.71 Aligned_cols=240 Identities=10% Similarity=-0.016 Sum_probs=164.7
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE
Q 048801 245 AVYCAIFDRSGRFVI-TGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 245 ~Vt~VafSpDG~~La-TGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L 323 (1715)
...+++++++|++++ +.+.++.|.+|+..++........+...+.+|+++++|+++++.. ++.|.+||...... ..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eee
Confidence 578899999999777 446789999999876544332233445788999999999666665 88999999865543 333
Q ss_pred e-CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeE
Q 048801 324 R-GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILC 402 (1715)
Q Consensus 324 ~-gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vts 402 (1715)
. .....+.++++.+++. ++++...++.|.+|+..+.... ... ......+.+
T Consensus 103 ~~~~~~~p~~i~~~~~g~---l~v~~~~~~~i~~~~~~~~~~~--~~~-----------------------~~~~~~p~~ 154 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGA---VYVADRGNNRVVKLAAGSKTQT--VLP-----------------------FTGLNDPDG 154 (270)
T ss_dssp CCCSCSSEEEEEECTTCC---EEEEEGGGTEEEEECTTCCSCE--ECC-----------------------CCSCCSCCC
T ss_pred ecCCcCCCcceEECCCCC---EEEEECCCCEEEEEECCCceeE--eec-----------------------cccCCCcee
Confidence 3 3336789999999886 6666677888999975433211 100 001224678
Q ss_pred EEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCC
Q 048801 403 CAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNS 482 (1715)
Q Consensus 403 lafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s 482 (1715)
++++++|+++++...++.|.+|+...... ......+...+.++++++++
T Consensus 155 i~~~~~g~l~v~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~p~~i~~d~~g---------------------- 203 (270)
T 1rwi_B 155 VAVDNSGNVYVTDTDNNRVVKLEAESNNQ---------VVLPFTDITAPWGIAVDEAG---------------------- 203 (270)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTTCCE---------EECCCSSCCSEEEEEECTTC----------------------
T ss_pred EEEeCCCCEEEEECCCCEEEEEecCCCce---------EeecccCCCCceEEEECCCC----------------------
Confidence 99999999888877788999999875421 11112233567889998875
Q ss_pred cccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEE
Q 048801 483 WFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA 562 (1715)
Q Consensus 483 ~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaT 562 (1715)
..+++...++.|.+|+..+.... .....+...+.+++++++|+++++
T Consensus 204 ----~l~v~~~~~~~v~~~~~~~~~~~-----------------------------~~~~~~~~~p~~i~~~~~g~l~v~ 250 (270)
T 1rwi_B 204 ----TVYVTEHNTNQVVKLLAGSTTST-----------------------------VLPFTGLNTPLAVAVDSDRTVYVA 250 (270)
T ss_dssp ----CEEEEETTTSCEEEECTTCSCCE-----------------------------ECCCCSCSCEEEEEECTTCCEEEE
T ss_pred ----CEEEEECCCCcEEEEcCCCCcce-----------------------------eeccCCCCCceeEEECCCCCEEEE
Confidence 57777777899999987642210 000112246789999999998888
Q ss_pred EecCCeEEEEECCCCc
Q 048801 563 AIMDCRICVWNAVDGS 578 (1715)
Q Consensus 563 gs~DGtI~IWDl~sg~ 578 (1715)
...++.|+++++...+
T Consensus 251 ~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 251 DRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EGGGTEEEEECCCGGG
T ss_pred ECCCCEEEEEcCCCcc
Confidence 8889999999986554
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-10 Score=130.43 Aligned_cols=241 Identities=11% Similarity=-0.003 Sum_probs=165.6
Q ss_pred CeEEEEecCCCCcceEEE-EecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc
Q 048801 329 AVTAIAFSPRPSAIYQLL-SSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA 407 (1715)
Q Consensus 329 ~VtsLafSPdg~~~~~La-SgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp 407 (1715)
...++++.+++. +++ +.+.++.|.+|+..+.... .+. ......+.++++++
T Consensus 25 ~p~~i~~~~~g~---l~v~~~~~~~~i~~~~~~~~~~~-~~~------------------------~~~~~~p~~i~~~~ 76 (270)
T 1rwi_B 25 SPSGVAVDSAGN---VYVTSEGMYGRVVKLATGSTGTT-VLP------------------------FNGLYQPQGLAVDG 76 (270)
T ss_dssp CEEEEEECTTCC---EEEEECSSSCEEEEECC-----E-ECC------------------------CCSCCSCCCEEECT
T ss_pred CccceEECCCCC---EEEEccCCCCcEEEecCCCcccc-eEe------------------------eCCcCCcceeEECC
Confidence 678999999986 555 5577899999987544321 000 00123467899999
Q ss_pred CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec-CCCCCeeEEEEccCcccccccccccccccccccccCCcccC
Q 048801 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS-GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCH 486 (1715)
Q Consensus 408 dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~-gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~ 486 (1715)
+|+++++.. ++.|.+|+...... ..+. .....+..+++.+++
T Consensus 77 ~g~l~v~~~-~~~i~~~d~~~~~~----------~~~~~~~~~~p~~i~~~~~g-------------------------- 119 (270)
T 1rwi_B 77 AGTVYVTDF-NNRVVTLAAGSNNQ----------TVLPFDGLNYPEGLAVDTQG-------------------------- 119 (270)
T ss_dssp TCCEEEEET-TTEEEEECTTCSCC----------EECCCCSCSSEEEEEECTTC--------------------------
T ss_pred CCCEEEEcC-CCEEEEEeCCCceE----------eeeecCCcCCCcceEECCCC--------------------------
Confidence 999777766 88999999865321 1111 223567889998875
Q ss_pred ceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC
Q 048801 487 DNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD 566 (1715)
Q Consensus 487 ~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D 566 (1715)
..+++...++.|.+|+..+.... .........+.+++++++|+++++...+
T Consensus 120 ~l~v~~~~~~~i~~~~~~~~~~~-----------------------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 170 (270)
T 1rwi_B 120 AVYVADRGNNRVVKLAAGSKTQT-----------------------------VLPFTGLNDPDGVAVDNSGNVYVTDTDN 170 (270)
T ss_dssp CEEEEEGGGTEEEEECTTCCSCE-----------------------------ECCCCSCCSCCCEEECTTCCEEEEEGGG
T ss_pred CEEEEECCCCEEEEEECCCceeE-----------------------------eeccccCCCceeEEEeCCCCEEEEECCC
Confidence 56777777889999965432100 0001112346789999999977777778
Q ss_pred CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEE
Q 048801 567 CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIV 646 (1715)
Q Consensus 567 GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LA 646 (1715)
+.|.+|+............+...+.+|++++ ++.++++...++.|.+|+............+...+.+++++++|++++
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v 249 (270)
T 1rwi_B 171 NRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYV 249 (270)
T ss_dssp TEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEE
T ss_pred CEEEEEecCCCceEeecccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEE
Confidence 8999999877665544344446789999999 558887777789999999866544332222335688999999999888
Q ss_pred EEeCCCeEEEEECCCCcc
Q 048801 647 LSDDVGQIYLLNTGQGES 664 (1715)
Q Consensus 647 sgs~DG~I~IWdl~tGe~ 664 (1715)
+...++.|.+|++...+.
T Consensus 250 ~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 250 ADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEGGGTEEEEECCCGGGS
T ss_pred EECCCCEEEEEcCCCccc
Confidence 888899999999876543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-09 Score=133.47 Aligned_cols=289 Identities=10% Similarity=-0.012 Sum_probs=186.6
Q ss_pred EECCCCCEEEEEeC--CC---eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec----------CCCcEEE
Q 048801 292 AVSSNNTLVASASN--DF---VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS----------DDGTCRI 356 (1715)
Q Consensus 292 afSpDg~lLASGS~--DG---tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS----------~DGtVrI 356 (1715)
...|+++++++... .. +|.+||..+++.+..+.....+ .++|+|+++ +|+.+. .++.|.+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~---~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGS---EFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCC---EEEEEeccccccccCCCCCeEEE
Confidence 34567777776653 22 8899999999988888754444 999999998 455543 4678999
Q ss_pred EecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC--CCeEEEEeCCCCCccCC
Q 048801 357 WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS--DTFARVWSACKSSVEDS 434 (1715)
Q Consensus 357 WDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~--DG~IrVWDl~t~~~~~~ 434 (1715)
||..+.+.+..+.++..... ........++|+|||++|+++.. ++.|.++| .+++.
T Consensus 102 iD~~t~~~~~~i~~~~~~~~------------------~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~--- 159 (373)
T 2mad_H 102 FDPVTFLPIADIELPDAPRF------------------DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS--- 159 (373)
T ss_pred EECCCCcEEEEEECCCcccc------------------ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE---
Confidence 99988776666544211000 00112357899999999998864 57899999 87643
Q ss_pred CCCceeeee-ecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc
Q 048801 435 EQPIHELDV-LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG 513 (1715)
Q Consensus 435 ~~~~~~l~~-l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~ 513 (1715)
+.. +.. . .++.+.+.+ ...+++.+.||.+.+++. +++......
T Consensus 160 ------~~~~i~~-~---~~~~~~~~~-------------------------~~~~~~~~~dg~~~~vd~-~g~~~~~~~ 203 (373)
T 2mad_H 160 ------DDQLLSS-P---TCYHIHPGA-------------------------PSTFYLLCAQGGLAKTDH-AGGAAGAGL 203 (373)
T ss_pred ------EeEEcCC-C---ceEEEEeCC-------------------------CceEEEEcCCCCEEEEEC-CCcEEEEEe
Confidence 222 211 1 123444443 356777888999999998 654221100
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc--eEEEEec------
Q 048801 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS--LVHSLTG------ 585 (1715)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~--~l~tL~g------ 585 (1715)
.. .. ............+.+++..++..+..+.|.+.|+.++. .+..+.-
T Consensus 204 --~~-------------------~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~ 260 (373)
T 2mad_H 204 --VG-------------------AM--LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRK 260 (373)
T ss_pred --cc-------------------cc--ccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccc
Confidence 00 00 00000111234566666655555578899999987653 2222221
Q ss_pred ----CCCCeEEEEEccCCCcEEEEEe---------CCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCC-EEEEEe-C
Q 048801 586 ----HSASSYVLDVHPFNPRIAMSAG---------YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGT-SIVLSD-D 650 (1715)
Q Consensus 586 ----H~~~V~sLafSP~dg~lLaSgs---------~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~-~LAsgs-~ 650 (1715)
.......++++|++++++++.. ..+.|.++|+.+++.+..+.... ....++|+|||+ +|+++. .
T Consensus 261 ~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~ 339 (373)
T 2mad_H 261 ADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAG 339 (373)
T ss_pred ccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECCCCCeEEEEEcCC
Confidence 1223445788996666555443 24689999999999999997443 578999999999 677776 5
Q ss_pred CCeEEEEECCCCccccc
Q 048801 651 VGQIYLLNTGQGESQKD 667 (1715)
Q Consensus 651 DG~I~IWdl~tGe~~k~ 667 (1715)
++.|.|||+.+++.++.
T Consensus 340 ~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 340 TEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CCeEEEEECCCCCEEee
Confidence 89999999999986654
|
| >3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-12 Score=132.22 Aligned_cols=99 Identities=14% Similarity=0.229 Sum_probs=86.5
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccC
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFI 1692 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~ 1692 (1715)
+..|...|..+ ...+....|..+++....++|...+..|||++||++||++++|++++++..||++|++||.+||.
T Consensus 9 ~~~~~~il~~l----~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~ 84 (112)
T 3d7c_A 9 YTTLKNLLAQI----KSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNP 84 (112)
T ss_dssp HHHHHHHHHHH----HHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHH----HcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCC
Confidence 33344444444 33467788888888888999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhhcC
Q 048801 1693 KNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1693 ~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
+++.|..+|+.|.++|.+.+.+|
T Consensus 85 ~~s~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 85 PDSEYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999998764
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-09 Score=122.27 Aligned_cols=280 Identities=8% Similarity=-0.025 Sum_probs=191.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEE-EecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC
Q 048801 240 RGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLA-SCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL 318 (1715)
Q Consensus 240 ~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~-tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~ 318 (1715)
......+.+++++++|++.++...++.|.+|+.. ++... .+..+...+.+++++++|.++++...++.|.+||.. +.
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 3456788999999999988877778999999988 65543 233345689999999999988877778899999987 55
Q ss_pred ceEE-EeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCC
Q 048801 319 PISV-LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQS 397 (1715)
Q Consensus 319 ~l~~-L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~ 397 (1715)
.... +......+.++++.+++. ++++...++.|..||.. ++.. .+..+ ...
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~g~---l~v~~~~~~~i~~~~~~-g~~~-~~~~~-----------------------~~~ 145 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGLNGD---IWFTQLNGDRIGKLTAD-GTIY-EYDLP-----------------------NKG 145 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTC---EEEEETTTTEEEEECTT-SCEE-EEECS-----------------------STT
T ss_pred eEEecCCCCCCCCccceECCCCC---EEEEccCCCeEEEECCC-CCEE-EccCC-----------------------CCC
Confidence 4322 222346789999999886 66666667889999876 4432 11111 012
Q ss_pred cceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccc
Q 048801 398 HQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 398 ~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
..+.++++.++|+++++...++.|.+|+. ++.. .. ..+..+...+..+++.+++
T Consensus 146 ~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~-------~~-~~~~~~~~~~~~i~~d~~g----------------- 199 (300)
T 2qc5_A 146 SYPAFITLGSDNALWFTENQNNSIGRITN-TGKL-------EE-YPLPTNAAAPVGITSGNDG----------------- 199 (300)
T ss_dssp CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-------EE-EECSSTTCCEEEEEECTTS-----------------
T ss_pred CCceeEEECCCCCEEEEecCCCeEEEECC-CCcE-------EE-eeCCCCCCCcceEEECCCC-----------------
Confidence 34789999999997777776789999998 4321 11 1122344567888888765
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
..+++....+.|.+|+.. +.... + ........+.+++++++|
T Consensus 200 ---------~l~v~~~~~~~i~~~~~~-g~~~~--------~--------------------~~~~~~~~~~~i~~d~~g 241 (300)
T 2qc5_A 200 ---------ALWFVEIMGNKIGRITTT-GEISE--------Y--------------------DIPTPNARPHAITAGKNS 241 (300)
T ss_dssp ---------SEEEEETTTTEEEEECTT-CCEEE--------E--------------------ECSSTTCCEEEEEECSTT
T ss_pred ---------CEEEEccCCCEEEEEcCC-CcEEE--------E--------------------ECCCCCCCceEEEECCCC
Confidence 566666667789999873 22100 0 001123457899999999
Q ss_pred CEEEEEecCCeEEEEECCCCceEEE-EecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 558 RFVLAAIMDCRICVWNAVDGSLVHS-LTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 558 ~~LaTgs~DGtI~IWDl~sg~~l~t-L~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
+++++...++.|.+|+. +++.... +......+.++++.+ ++.++++.. . .|..+|.
T Consensus 242 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 242 EIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGK-DGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECT-TSCEEEECS-S-EEEEEEE
T ss_pred CEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCC-CCCEEEEcc-C-ceEEeCC
Confidence 97776666789999998 5554322 333455678899988 566665544 4 6766664
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-10 Score=132.80 Aligned_cols=247 Identities=12% Similarity=0.052 Sum_probs=175.5
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecCCC-CCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCC-CCeE
Q 048801 254 SGRFVITGSDDRLVKIWSMETAFCLASCRGHE-GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHT-GAVT 331 (1715)
Q Consensus 254 DG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs-~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~-~~Vt 331 (1715)
.+++|++++.|+.|.+||.++|+.+..+..+. ..+.+++++|+|++|+ +.++.|..||. +|+.+..+..+. ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 46799999999999999999999999998776 5789999999999998 45778999998 899999988653 5788
Q ss_pred EEEecCCCCcceEEEEecC-CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC
Q 048801 332 AIAFSPRPSAIYQLLSSSD-DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT 410 (1715)
Q Consensus 332 sLafSPdg~~~~~LaSgS~-DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~ 410 (1715)
++.+.+++. +|++.+. ++.|..+|. +++.+..+...... ..+......+++.++|+
T Consensus 81 ~~~~~~dG~---~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~-------------------~~~~~~~~~v~~~~~G~ 137 (276)
T 3no2_A 81 TARILPDGN---ALVAWCGHPSTILEVNM-KGEVLSKTEFETGI-------------------ERPHAQFRQINKNKKGN 137 (276)
T ss_dssp EEEECTTSC---EEEEEESTTEEEEEECT-TSCEEEEEEECCSC-------------------SSGGGSCSCCEECTTSC
T ss_pred ccEECCCCC---EEEEecCCCCEEEEEeC-CCCEEEEEeccCCC-------------------CcccccccCceECCCCC
Confidence 999999998 6777766 778888886 66665555332110 00112344567899999
Q ss_pred eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEE
Q 048801 411 VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIV 490 (1715)
Q Consensus 411 ~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~La 490 (1715)
+|++...++.|.+||.. ++. +..+..+ ..+.++.+.+++ +.++
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~~---------~w~~~~~-~~~~~~~~~~~g--------------------------~~~v 180 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQL---------LNSVKLS-GTPFSSAFLDNG--------------------------DCLV 180 (276)
T ss_dssp EEEEETTTTEEEEECTT-SCE---------EEEEECS-SCCCEEEECTTS--------------------------CEEE
T ss_pred EEEEecCCCEEEEECCC-CCE---------EEEEECC-CCccceeEcCCC--------------------------CEEE
Confidence 99999999999999987 542 3444333 344556666665 6788
Q ss_pred EEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC----
Q 048801 491 TCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD---- 566 (1715)
Q Consensus 491 SgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D---- 566 (1715)
+++.++.|..+|..+++.+..+.... + .+ .....+..++..++|.++++....
T Consensus 181 ~~~~~~~v~~~d~~tG~~~w~~~~~~----~------------~~-------~~l~~~~~~~~~~~G~i~v~~~~g~~~~ 237 (276)
T 3no2_A 181 ACGDAHCFVQLNLESNRIVRRVNAND----I------------EG-------VQLFFVAQLFPLQNGGLYICNWQGHDRE 237 (276)
T ss_dssp ECBTTSEEEEECTTTCCEEEEEEGGG----S------------BS-------CCCSEEEEEEECTTSCEEEEEECTTCTT
T ss_pred EeCCCCeEEEEeCcCCcEEEEecCCC----C------------CC-------ccccccccceEcCCCCEEEEeccCcccc
Confidence 88888899999998876543332100 0 00 011346788889999988877422
Q ss_pred ----CeEEEEEC-CCCceEEEEecC
Q 048801 567 ----CRICVWNA-VDGSLVHSLTGH 586 (1715)
Q Consensus 567 ----GtI~IWDl-~sg~~l~tL~gH 586 (1715)
+..+++.+ .+|+.+..+..+
T Consensus 238 ~~~~~~~~~~~~~~~g~~~W~~~~~ 262 (276)
T 3no2_A 238 AGKGKHPQLVEIDSEGKVVWQLNDK 262 (276)
T ss_dssp GGGSCCCSEEEECTTSBEEEEECCT
T ss_pred ccccCCceEEEECCCCCEEEEecCc
Confidence 13345555 467777776543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.9e-09 Score=121.52 Aligned_cols=278 Identities=12% Similarity=0.050 Sum_probs=190.9
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEE-EeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC
Q 048801 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISV-LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY 361 (1715)
Q Consensus 283 gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~-L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t 361 (1715)
.....+.+|+++++|+++++...++.|.+|+.. ++.... +..+...+.++++.+++. ++++...++.|..||..
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~---l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD---IWFTENGANKIGKLSKK- 91 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC---EEEEETTTTEEEEECTT-
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCC---EEEEecCCCeEEEECCC-
Confidence 345688999999999988887778999999987 554332 223346789999999886 56666667889999987
Q ss_pred CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceee
Q 048801 362 SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHEL 441 (1715)
Q Consensus 362 g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l 441 (1715)
++. ..+..+. ....+.++++.++|.++++...++.|..|+.. ++. . .
T Consensus 92 g~~-~~~~~~~-----------------------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-------~-~ 138 (300)
T 2qc5_A 92 GGF-TEYPLPQ-----------------------PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI-------Y-E 138 (300)
T ss_dssp SCE-EEEECSS-----------------------TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-------E-E
T ss_pred CCe-EEecCCC-----------------------CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE-------E-E
Confidence 543 2221110 12347899999999988887778899999876 321 1 1
Q ss_pred eeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccc
Q 048801 442 DVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHL 521 (1715)
Q Consensus 442 ~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l 521 (1715)
..+......+..+++.+++ ..+++...++.|.+|+. ++.... +.
T Consensus 139 ~~~~~~~~~~~~i~~d~~g--------------------------~l~v~~~~~~~i~~~~~-~g~~~~--------~~- 182 (300)
T 2qc5_A 139 YDLPNKGSYPAFITLGSDN--------------------------ALWFTENQNNSIGRITN-TGKLEE--------YP- 182 (300)
T ss_dssp EECSSTTCCEEEEEECTTS--------------------------SEEEEETTTTEEEEECT-TCCEEE--------EE-
T ss_pred ccCCCCCCCceeEEECCCC--------------------------CEEEEecCCCeEEEECC-CCcEEE--------ee-
Confidence 1123344567888888875 56666666788999987 322110 00
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEE-EecCCCCeEEEEEccCCC
Q 048801 522 KVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHS-LTGHSASSYVLDVHPFNP 600 (1715)
Q Consensus 522 ~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~t-L~gH~~~V~sLafSP~dg 600 (1715)
.......+..++++++|.++++....+.|.+|+. +++.... +..+...+.++++++ ++
T Consensus 183 -------------------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g 241 (300)
T 2qc5_A 183 -------------------LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGK-NS 241 (300)
T ss_dssp -------------------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TT
T ss_pred -------------------CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECC-CC
Confidence 0112245788999999987777767788999998 5655443 334556789999999 56
Q ss_pred cEEEEEeCCCcEEEEECCCCceEEEEE--cccceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 601 RIAMSAGYDGRTIVWDIWEGTPIRIYE--IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 601 ~lLaSgs~DGtI~VWDl~tgk~l~tl~--~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
+++++...++.|.+|+. +++.. .+. .....+.+++++++|.+.++.. . .|..++.
T Consensus 242 ~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 242 EIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 77776666789999998 55443 332 2345678899999998666554 4 7777765
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.8e-10 Score=132.90 Aligned_cols=253 Identities=8% Similarity=-0.050 Sum_probs=171.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe
Q 048801 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~ 324 (1715)
....+++. ++++.++...++.|.+||..+++.+.++. .......++++++++++++...++.|.+||+.+++....+.
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 45667774 34455556668999999999999999886 34678999999998555555489999999999998877776
Q ss_pred CCC-----CCeEEEEecCCCCcceEEEEec-CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCc
Q 048801 325 GHT-----GAVTAIAFSPRPSAIYQLLSSS-DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH 398 (1715)
Q Consensus 325 gH~-----~~VtsLafSPdg~~~~~LaSgS-~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~ 398 (1715)
... .....|++ ..+. ++++.. .++.|.+||+.+++.+..+... .
T Consensus 123 ~g~~~~~~~~p~~i~~-~~~~---lyv~~~~~~~~v~viD~~t~~~~~~i~~g--------------------------~ 172 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ-YGKY---VYVNCWSYQNRILKIDTETDKVVDELTIG--------------------------I 172 (328)
T ss_dssp CTTCCTTTCBCCCEEE-ETTE---EEEEECTTCCEEEEEETTTTEEEEEEECS--------------------------S
T ss_pred cCCccccCCCcceEEE-ECCE---EEEEcCCCCCEEEEEECCCCeEEEEEEcC--------------------------C
Confidence 433 14567777 3332 334433 4889999999988766554321 1
Q ss_pred ceeEEEEccCCCeEEEecCC----------CeEEEEeCCCCCccCCCCCceeeeeecCC-CCCeeEEEEccCcccccccc
Q 048801 399 QILCCAYNANGTVFVTGSSD----------TFARVWSACKSSVEDSEQPIHELDVLSGH-ENDVNYVQFSGCAVASRSAM 467 (1715)
Q Consensus 399 ~VtslafSpdG~~LatGs~D----------G~IrVWDl~t~~~~~~~~~~~~l~~l~gH-~~~V~sLafspdg~as~~~~ 467 (1715)
....++++++|++++++..+ +.|.+||..++++ ...+... ......++|+|++
T Consensus 173 ~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v---------~~~~~~~~g~~p~~la~~~d~------- 236 (328)
T 3dsm_A 173 QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV---------EKQFKFKLGDWPSEVQLNGTR------- 236 (328)
T ss_dssp CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE---------EEEEECCTTCCCEEEEECTTS-------
T ss_pred CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE---------EEEEecCCCCCceeEEEecCC-------
Confidence 23568899999987777654 7899999977532 2222211 2367899999976
Q ss_pred cccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCC
Q 048801 468 SDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG 547 (1715)
Q Consensus 468 ~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~ 547 (1715)
+.|.++.. .|.+||+.+++.... ..+......
T Consensus 237 -------------------~~lyv~~~--~v~~~d~~t~~~~~~---------------------------~~~~~~~~~ 268 (328)
T 3dsm_A 237 -------------------DTLYWINN--DIWRMPVEADRVPVR---------------------------PFLEFRDTK 268 (328)
T ss_dssp -------------------CEEEEESS--SEEEEETTCSSCCSS---------------------------CSBCCCSSC
T ss_pred -------------------CEEEEEcc--EEEEEECCCCceeee---------------------------eeecCCCCc
Confidence 45655544 899999886542100 000011345
Q ss_pred eeEEEeCC-CCCEEEEE----ecCCeEEEEECCCCceEEEEecCCCCeEEEEE
Q 048801 548 VNMIVWSL-DNRFVLAA----IMDCRICVWNAVDGSLVHSLTGHSASSYVLDV 595 (1715)
Q Consensus 548 VtslafSP-DG~~LaTg----s~DGtI~IWDl~sg~~l~tL~gH~~~V~sLaf 595 (1715)
...++++| ++.++++. ..++.|.+||.. |+.+.++..-.. -..++|
T Consensus 269 p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~-P~~~~~ 319 (328)
T 3dsm_A 269 YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGII-PGAFCW 319 (328)
T ss_dssp EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEES-EEEEEE
T ss_pred eEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccC-cceEEE
Confidence 78899999 55555555 568899999997 998888863222 245555
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-09 Score=133.41 Aligned_cols=290 Identities=15% Similarity=0.123 Sum_probs=191.7
Q ss_pred EEECCCCCEEEEEeC-----CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec----------CCCcEE
Q 048801 291 LAVSSNNTLVASASN-----DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS----------DDGTCR 355 (1715)
Q Consensus 291 LafSpDg~lLASGS~-----DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS----------~DGtVr 355 (1715)
....|++..|++... ++.|.+.|..+++.+..+.....+ . ++++|+++. |+++. .++.|.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~---lyVan~~~~r~~~G~~~~~Vs 112 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSF---IAHASTVFSRIARGERTDYVE 112 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSC---EEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCE---EEEEcccccccccCCCCCEEE
Confidence 455789998888866 679999999999999988755555 4 999999984 44333 467899
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC--CCeEEEEeCCCCCccC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS--DTFARVWSACKSSVED 433 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~--DG~IrVWDl~t~~~~~ 433 (1715)
+||..+++.+..+.++..... ........++|+|||++|.++.. ++.|.++|+.+.+.
T Consensus 113 viD~~t~~v~~~I~v~~g~r~------------------~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v-- 172 (386)
T 3sjl_D 113 VFDPVTLLPTADIELPDAPRF------------------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF-- 172 (386)
T ss_dssp EECTTTCCEEEEEEETTCCCC------------------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE--
T ss_pred EEECCCCeEEEEEECCCcccc------------------ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE--
Confidence 999999987777654321000 00123457899999998887753 68999999987543
Q ss_pred CCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC-CccCccc
Q 048801 434 SEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS-RRSHGKV 512 (1715)
Q Consensus 434 ~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t-~~~~~~~ 512 (1715)
+..+.... |..+.|.+ ...+++.+.||.+.+.++.+ ++...
T Consensus 173 -------v~tI~v~g----~~~~~P~g-------------------------~~~~~~~~~DG~~~~v~~~~~g~v~~-- 214 (386)
T 3sjl_D 173 -------KRMLDVPD----CYHIFPTA-------------------------PDTFFMHCRDGSLAKVAFGTEGTPEI-- 214 (386)
T ss_dssp -------EEEEECCS----EEEEEEEE-------------------------TTEEEEEETTSCEEEEECCSSSCCEE--
T ss_pred -------EEEEECCC----cceeecCC-------------------------CceeEEECCCCCEEEEECCCCCeEEE--
Confidence 33332111 12222333 35777888899999999875 33210
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcccccCCCCCe-eEEEe-CCCCCEEEEEecCCeEEEEECCCCc--eEEEEe----
Q 048801 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV-NMIVW-SLDNRFVLAAIMDCRICVWNAVDGS--LVHSLT---- 584 (1715)
Q Consensus 513 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V-tslaf-SPDG~~LaTgs~DGtI~IWDl~sg~--~l~tL~---- 584 (1715)
.. ...+ ......+ ...+| .++|++++ .+.+|.|++.|+.++. .+..+.
T Consensus 215 ~~-~~~~----------------------~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~ 270 (386)
T 3sjl_D 215 TH-TEVF----------------------HPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTE 270 (386)
T ss_dssp EE-CCCC----------------------SCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred ee-ccee----------------------ccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccc
Confidence 00 0000 0000111 11255 46786655 5568999999997654 232222
Q ss_pred -----c-CCCCeEEEEEccCCCcEEEEEeC---------CCcEEEEECCCCceEEEEEcccceEEEEEEcCCCC-EEEEE
Q 048801 585 -----G-HSASSYVLDVHPFNPRIAMSAGY---------DGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGT-SIVLS 648 (1715)
Q Consensus 585 -----g-H~~~V~sLafSP~dg~lLaSgs~---------DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~-~LAsg 648 (1715)
+ ..+....+++++++++++++... .+.|.+.|+.+++.+..+.... .+..++|++||+ +|+++
T Consensus 271 ~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~lavs~D~~~~ly~t 349 (386)
T 3sjl_D 271 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLLYAL 349 (386)
T ss_dssp HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECSSSSCEEEEE
T ss_pred ccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceEEECCCCCeEEEEE
Confidence 0 12233457778866666655431 2579999999999999998543 678999999997 66665
Q ss_pred -eCCCeEEEEECCCCcccccc
Q 048801 649 -DDVGQIYLLNTGQGESQKDA 668 (1715)
Q Consensus 649 -s~DG~I~IWdl~tGe~~k~~ 668 (1715)
..++.|.++|..+++.++..
T Consensus 350 n~~~~~VsViD~~t~k~~~~i 370 (386)
T 3sjl_D 350 STGDKTLYIHDAESGEELRSV 370 (386)
T ss_dssp ETTTTEEEEEETTTCCEEEEE
T ss_pred cCCCCeEEEEECCCCcEEEEe
Confidence 45899999999999876543
|
| >3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-12 Score=132.12 Aligned_cols=98 Identities=14% Similarity=0.259 Sum_probs=85.7
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccC
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFI 1692 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~ 1692 (1715)
+.+|...|..+. ..++...|..+++....++|...+..|||++||++||++++|++++++..||++|++||.+||.
T Consensus 18 ~~~~~~il~~l~----~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 93 (116)
T 3nxb_A 18 FTAMYKVLDVVK----AHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNG 93 (116)
T ss_dssp HHHHHHHHHHHH----HSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH----hCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 444555555543 3466677888888778899999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhhc
Q 048801 1693 KNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1693 ~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
++++|..+|+.|.++|.+.+.+
T Consensus 94 ~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 94 ESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998864
|
| >2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.3e-12 Score=129.27 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=89.2
Q ss_pred ChHHHHHHhhhHHHhhhhc--cccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q 048801 1609 DSESRDKLLSSFNKLEQSV--SRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSN 1686 (1715)
Q Consensus 1609 ~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~N 1686 (1715)
.+...+++...|..+.... ...+....|..+++....++|...+..||||+||++||++++|+++++++.||++|++|
T Consensus 11 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 90 (123)
T 2dat_A 11 PPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHN 90 (123)
T ss_dssp CHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 3444455555555554321 12345677888888788899999999999999999999999999999999999999999
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1687 AESYFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1687 a~~~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
|.+||.+++.|..+|+.|.++|.+.+.+|
T Consensus 91 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 91 AQTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999998765
|
| >3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.9e-12 Score=135.82 Aligned_cols=103 Identities=15% Similarity=0.161 Sum_probs=91.4
Q ss_pred HHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhcc
Q 048801 1612 SRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYF 1691 (1715)
Q Consensus 1612 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n 1691 (1715)
.+++|+..+.++......++.+..|..+......++|...+..||||+||++||++++|++++++..||++|++||.+||
T Consensus 28 ~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 107 (150)
T 3tlp_A 28 RMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYN 107 (150)
T ss_dssp HHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 45666677766655444566678888888888899999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhhc
Q 048801 1692 IKNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1692 ~~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
.+++.|..+|+.|.++|.+++.+
T Consensus 108 ~~~s~i~~~A~~L~~~f~~~~~~ 130 (150)
T 3tlp_A 108 EEGSQVYNDAHILEKLLKEKRKE 130 (150)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998865
|
| >4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-12 Score=136.95 Aligned_cols=86 Identities=22% Similarity=0.298 Sum_probs=80.1
Q ss_pred cchhhhhHHHHHHh--hhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAA--QKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDW 1707 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~ 1707 (1715)
.+....|..+++.. ..++|...+..||||+||++||++++|++++++..||++|++||++||.+++.|..+|+.|.++
T Consensus 47 ~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~i~~~A~~L~~~ 126 (154)
T 4alg_A 47 HQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKI 126 (154)
T ss_dssp STTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 46677788888755 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC
Q 048801 1708 FNRTLNKL 1715 (1715)
Q Consensus 1708 ~~~~i~~~ 1715 (1715)
|.+.+.+|
T Consensus 127 f~~~~~~l 134 (154)
T 4alg_A 127 FLQKVASM 134 (154)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHHC
Confidence 99999875
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.5e-10 Score=149.74 Aligned_cols=282 Identities=14% Similarity=0.072 Sum_probs=174.6
Q ss_pred cCCCCEEEEEeCCCc---EEEEeC--C---CCcEEEEe------cCCCCCeEEEEECCCCCEEEEEeCC-----CeeEEE
Q 048801 252 DRSGRFVITGSDDRL---VKIWSM--E---TAFCLASC------RGHEGDITDLAVSSNNTLVASASND-----FVIRVW 312 (1715)
Q Consensus 252 SpDG~~LaTGS~DGt---IrIWDl--~---tgk~l~tL------~gHs~~VtsLafSpDg~lLASGS~D-----GtIrVW 312 (1715)
+|+|++++....++. -.||-. . .+.....+ .+|...+..++|||||++||.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 388998887664432 455543 3 33332221 2344478899999999999887654 469999
Q ss_pred ECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCc--------------EEEEecCCCCCcceecCCCCCCCcc
Q 048801 313 RLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT--------------CRIWDARYSQYSPRIYLPKPPDAIT 378 (1715)
Q Consensus 313 Dl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGt--------------VrIWDl~tg~~l~~i~~~~~~~~i~ 378 (1715)
|+.+|+.+... .+...+..++|+|+ + .|+.++.++. |++|++.++.....+....
T Consensus 195 dl~tg~~~~~~-~~~~~~~~~~wspD-~---~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~------ 263 (741)
T 1yr2_A 195 GVADGKPLADE-LKWVKFSGLAWLGN-D---ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT------ 263 (741)
T ss_dssp ETTTCCEEEEE-EEEEESCCCEESTT-S---EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC------
T ss_pred ECCCCCCCCcc-CCCceeccEEEECC-C---EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc------
Confidence 99999876532 12222467899999 7 5666655543 8889887665322211100
Q ss_pred CccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC-----eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeE
Q 048801 379 GKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT-----FARVWSACKSSVEDSEQPIHELDVLSGHENDVNY 453 (1715)
Q Consensus 379 g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG-----~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~s 453 (1715)
..+...+..+.|+|||++|+..+.++ .|++||+.++.. .....+..+...+..
T Consensus 264 ---------------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~~ 321 (741)
T 1yr2_A 264 ---------------PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI-------GPVTALIPDLKAQWD 321 (741)
T ss_dssp ---------------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE-------CCCEEEECSSSSCEE
T ss_pred ---------------CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC-------cccEEecCCCCceEE
Confidence 11122478899999999888776543 899999875410 102334444444444
Q ss_pred EEEccCcccccccccccccccccccccCCcccCceEEEEcC----CCeEEEEecCCCccCcccccccccccccCCCCCCC
Q 048801 454 VQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR----DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLP 529 (1715)
Q Consensus 454 Lafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~----DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~ 529 (1715)
.. ++++ +.|+..+. ++.|.+|++.++. ..|..
T Consensus 322 ~~-~~dg--------------------------~~l~~~s~~~~~~~~l~~~d~~~~~-----~~~~~------------ 357 (741)
T 1yr2_A 322 FV-DGVG--------------------------DQLWFVSGDGAPLKKIVRVDLSGST-----PRFDT------------ 357 (741)
T ss_dssp EE-EEET--------------------------TEEEEEECTTCTTCEEEEEECSSSS-----CEEEE------------
T ss_pred EE-eccC--------------------------CEEEEEECCCCCCCEEEEEeCCCCc-----cccEE------------
Confidence 43 3554 45555544 4568899887521 01111
Q ss_pred CCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECC-CCceEEEEec-CCCCeEEEEEccCCCcEEEEEe
Q 048801 530 PQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV-DGSLVHSLTG-HSASSYVLDVHPFNPRIAMSAG 607 (1715)
Q Consensus 530 ~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~-sg~~l~tL~g-H~~~V~sLafSP~dg~lLaSgs 607 (1715)
.+..+...+..++|+ ++.++++...|+..+||.+. ++..+..+.. +.+.|..+.++|++..++++.+
T Consensus 358 ----------l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s 426 (741)
T 1yr2_A 358 ----------VVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFS 426 (741)
T ss_dssp ----------EECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEE
T ss_pred ----------EecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEc
Confidence 111223346677777 66788888889987777554 5666777765 3667889999996655665544
Q ss_pred ---CCCcEEEEECCCCc
Q 048801 608 ---YDGRTIVWDIWEGT 621 (1715)
Q Consensus 608 ---~DGtI~VWDl~tgk 621 (1715)
..++|++||+.+++
T Consensus 427 s~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 427 SFTQPATVLALDPATAK 443 (741)
T ss_dssp ETTEEEEEEEEETTTTE
T ss_pred CCCCCCEEEEEECCCCc
Confidence 34789999998886
|
| >3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.9e-12 Score=132.17 Aligned_cols=86 Identities=24% Similarity=0.374 Sum_probs=80.3
Q ss_pred cchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFN 1709 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~ 1709 (1715)
.+....|..+++....++|...+..||||+||++||++++|+++++++.||++|++||.+||.+++.|.++|+.|.+.|.
T Consensus 38 ~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~ 117 (130)
T 3k2j_A 38 QLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQ 117 (130)
T ss_dssp CBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 44467788888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q 048801 1710 RTLNKL 1715 (1715)
Q Consensus 1710 ~~i~~~ 1715 (1715)
+.+.+|
T Consensus 118 ~~~~~l 123 (130)
T 3k2j_A 118 AKKKEL 123 (130)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988653
|
| >3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-12 Score=131.63 Aligned_cols=86 Identities=21% Similarity=0.290 Sum_probs=80.3
Q ss_pred cchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFN 1709 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~ 1709 (1715)
.+....|..+......++|...+..|||++||++||++++|++++++..||++|++||.+||.+++.|..+|+.|.++|.
T Consensus 29 ~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~ 108 (120)
T 3ljw_A 29 RLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFY 108 (120)
T ss_dssp CBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 34477888888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q 048801 1710 RTLNKL 1715 (1715)
Q Consensus 1710 ~~i~~~ 1715 (1715)
+.+.+|
T Consensus 109 ~~~~~i 114 (120)
T 3ljw_A 109 MKKAEI 114 (120)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988753
|
| >2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3.4e-12 Score=131.71 Aligned_cols=105 Identities=18% Similarity=0.234 Sum_probs=88.4
Q ss_pred HHHHHHhhhHHHhhhh---ccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhh
Q 048801 1611 ESRDKLLSSFNKLEQS---VSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNA 1687 (1715)
Q Consensus 1611 ~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na 1687 (1715)
...+++...|..+... ....+.+..|..+++....++|...+..||||+||++||++++|++++++..||++|++||
T Consensus 11 ~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na 90 (129)
T 2grc_A 11 NLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNA 90 (129)
T ss_dssp HHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 3344444444444432 2345667788888888889999999999999999999999999999999999999999999
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1688 ESYFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1688 ~~~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
.+||.+++.|..+|+.|.++|.+.+..|
T Consensus 91 ~~yN~~~s~i~~~A~~L~~~f~~~~~~l 118 (129)
T 2grc_A 91 QTFNLEGSLIYEDSIVLQSVFTSVRQKI 118 (129)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999887653
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.4e-10 Score=149.89 Aligned_cols=279 Identities=12% Similarity=0.011 Sum_probs=174.5
Q ss_pred CCCCEEEEEeCCCe---eEEEEC--C---CCCceEEE------eCCCCCeEEEEecCCCCcceEEEEecCC-----CcEE
Q 048801 295 SNNTLVASASNDFV---IRVWRL--P---DGLPISVL------RGHTGAVTAIAFSPRPSAIYQLLSSSDD-----GTCR 355 (1715)
Q Consensus 295 pDg~lLASGS~DGt---IrVWDl--~---tg~~l~~L------~gH~~~VtsLafSPdg~~~~~LaSgS~D-----GtVr 355 (1715)
|+|.+++....++. -.||.. . .+.....+ .+|...+..++|||+++ +|+.++.+ ..|+
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~---~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGR---LLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSS---EEEEEEEETTCSEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCC---EEEEEEcCCCCceEEEE
Confidence 77777776654432 445543 3 33333222 12334688999999998 55554332 4699
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCe--------------E
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTF--------------A 421 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~--------------I 421 (1715)
+||+.+++.+... . +...+..++|+|| +.|+.++.++. |
T Consensus 193 v~dl~tg~~~~~~-~-------------------------~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v 245 (741)
T 1yr2_A 193 FVGVADGKPLADE-L-------------------------KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTV 245 (741)
T ss_dssp EEETTTCCEEEEE-E-------------------------EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEE
T ss_pred EEECCCCCCCCcc-C-------------------------CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEE
Confidence 9999988753211 0 0111357899999 88888776554 8
Q ss_pred EEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC-----C
Q 048801 422 RVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD-----G 496 (1715)
Q Consensus 422 rVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D-----G 496 (1715)
++|++.++... ...+.....+...+..+.|+|++ +.|+..+.+ .
T Consensus 246 ~~~~lgt~~~~-----~~lv~~~~~~~~~~~~~~~SpDG--------------------------~~l~~~~~~~~~~~~ 294 (741)
T 1yr2_A 246 WLHRLGTPQSA-----DQPVFATPELPKRGHGASVSSDG--------------------------RWVVITSSEGTDPVN 294 (741)
T ss_dssp EEEETTSCGGG-----CEEEECCTTCTTCEEEEEECTTS--------------------------CEEEEEEECTTCSCC
T ss_pred EEEECCCCchh-----CEEEeccCCCCeEEEEEEECCCC--------------------------CEEEEEEEccCCCcc
Confidence 89998664310 11222223333458899999987 566665543 3
Q ss_pred eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC----CeEEEE
Q 048801 497 SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD----CRICVW 572 (1715)
Q Consensus 497 sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D----GtI~IW 572 (1715)
.|.+||+.++.. .....+..+...+... ++|+|+.|+..+.+ +.|.+|
T Consensus 295 ~l~~~d~~~~~~---------------------------~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~ 346 (741)
T 1yr2_A 295 TVHVARVTNGKI---------------------------GPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRV 346 (741)
T ss_dssp EEEEEEEETTEE---------------------------CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEE
T ss_pred eEEEEECCCCCC---------------------------cccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEE
Confidence 788998875310 0011222223334444 34899988887763 459999
Q ss_pred ECCCC--ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-CCceEEEEEc-ccceEEEEEEcCCCCEEEEE
Q 048801 573 NAVDG--SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW-EGTPIRIYEI-GRFKLVDGKFSPDGTSIVLS 648 (1715)
Q Consensus 573 Dl~sg--~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~-tgk~l~tl~~-h~~~V~svafSPDG~~LAsg 648 (1715)
++.++ .....+..+...+..++|+ ++.++++...||..+||.+. +|..+..+.. +.+.+..+.++||+..|+..
T Consensus 347 d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~ 424 (741)
T 1yr2_A 347 DLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLS 424 (741)
T ss_dssp ECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEE
T ss_pred eCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEE
Confidence 99875 3333444445556667775 56888999999987777654 5666666654 35678889999999877743
Q ss_pred e----CCCeEEEEECCCCcc
Q 048801 649 D----DVGQIYLLNTGQGES 664 (1715)
Q Consensus 649 s----~DG~I~IWdl~tGe~ 664 (1715)
. ..+.|++||+.+|+.
T Consensus 425 ~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 425 FSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEETTEEEEEEEEETTTTEE
T ss_pred EcCCCCCCEEEEEECCCCcE
Confidence 2 347999999988864
|
| >3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.9e-12 Score=128.22 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=88.6
Q ss_pred HHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhcc
Q 048801 1612 SRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYF 1691 (1715)
Q Consensus 1612 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n 1691 (1715)
.+.+|+..|.+.... ...+....|..+......++|...+..|||++||++||+++.|++++++..||++|++||.+||
T Consensus 9 ~c~~il~~l~~~~d~-~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 87 (116)
T 3iu5_A 9 VCHELYNTIRDYKDE-QGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYY 87 (116)
T ss_dssp HHHHHHHHHHHCBCT-TCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcc-CCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 356666666665332 2335567788888888889999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1692 IKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1692 ~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
.+++.|..+|+.|.++|.+.+.+|
T Consensus 88 ~~~s~~~~~A~~L~~~f~~~~~~l 111 (116)
T 3iu5_A 88 KPDSPEYKAACKLWDLYLRTRNEF 111 (116)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988753
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.2e-10 Score=128.76 Aligned_cols=236 Identities=11% Similarity=-0.015 Sum_probs=165.4
Q ss_pred CCCCEEEEEeCCCeeEEEECCCCCceEEEeCCC-CCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCC
Q 048801 295 SNNTLVASASNDFVIRVWRLPDGLPISVLRGHT-GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKP 373 (1715)
Q Consensus 295 pDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~-~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~ 373 (1715)
..+++|++++.++.|.+||..+|+.+..+..+. ..+.+++++|++. +|+ +.++.|..||. +++.+..+..+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~---ilv--s~~~~V~~~d~-~G~~~W~~~~~-- 74 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE---ILF--SYSKGAKMITR-DGRELWNIAAP-- 74 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC---EEE--ECBSEEEEECT-TSCEEEEEECC--
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC---EEE--eCCCCEEEECC-CCCEEEEEcCC--
Confidence 346799999999999999999999999998776 5789999999987 566 45778999998 78776665431
Q ss_pred CCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-CCeEEEEeCCCCCccCCCCCceeeeeec------C
Q 048801 374 PDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-DTFARVWSACKSSVEDSEQPIHELDVLS------G 446 (1715)
Q Consensus 374 ~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-DG~IrVWDl~t~~~~~~~~~~~~l~~l~------g 446 (1715)
....+.++.+.++|+++++.+. ++.|..++. +++. +..+. .
T Consensus 75 ----------------------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~---------l~~~~~~~~~~~ 122 (276)
T 3no2_A 75 ----------------------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEV---------LSKTEFETGIER 122 (276)
T ss_dssp ----------------------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCE---------EEEEEECCSCSS
T ss_pred ----------------------CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCE---------EEEEeccCCCCc
Confidence 1234788999999999999877 777877776 3321 11111 1
Q ss_pred CCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCC
Q 048801 447 HENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPP 526 (1715)
Q Consensus 447 H~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~ 526 (1715)
+......+.+.+++ +++++...++.|.+||.. ++.+..+.
T Consensus 123 ~~~~~~~v~~~~~G--------------------------~~lv~~~~~~~v~~~d~~-G~~~w~~~------------- 162 (276)
T 3no2_A 123 PHAQFRQINKNKKG--------------------------NYLVPLFATSEVREIAPN-GQLLNSVK------------- 162 (276)
T ss_dssp GGGSCSCCEECTTS--------------------------CEEEEETTTTEEEEECTT-SCEEEEEE-------------
T ss_pred ccccccCceECCCC--------------------------CEEEEecCCCEEEEECCC-CCEEEEEE-------------
Confidence 11123334445544 789999999999999987 55322210
Q ss_pred CCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCC------CCeEEEEEccCCC
Q 048801 527 PLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHS------ASSYVLDVHPFNP 600 (1715)
Q Consensus 527 ~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~------~~V~sLafSP~dg 600 (1715)
. ...+.++.+.++|.+|+++..++.|..+|..+|+.+..+..+. ..+..++..+ ++
T Consensus 163 ----------------~-~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~-~G 224 (276)
T 3no2_A 163 ----------------L-SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ-NG 224 (276)
T ss_dssp ----------------C-SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT-TS
T ss_pred ----------------C-CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC-CC
Confidence 0 1234557788999999999988999999999999999997542 2267777877 66
Q ss_pred cEEEEEe--CC------CcEEEEEC-CCCceEEEEEc
Q 048801 601 RIAMSAG--YD------GRTIVWDI-WEGTPIRIYEI 628 (1715)
Q Consensus 601 ~lLaSgs--~D------GtI~VWDl-~tgk~l~tl~~ 628 (1715)
.++++.. .. +..+++.+ .+|+.+..+..
T Consensus 225 ~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 225 GLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp CEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred CEEEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence 6666653 11 12344444 46666666653
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-09 Score=125.71 Aligned_cols=253 Identities=11% Similarity=0.064 Sum_probs=167.0
Q ss_pred cCCCCCeEEEEECCCCCEEEE-------EeCCCeeEEEECCCCCceEEEe----CCCCCeEEEEecCC-CCcceEEEEec
Q 048801 282 RGHEGDITDLAVSSNNTLVAS-------ASNDFVIRVWRLPDGLPISVLR----GHTGAVTAIAFSPR-PSAIYQLLSSS 349 (1715)
Q Consensus 282 ~gHs~~VtsLafSpDg~lLAS-------GS~DGtIrVWDl~tg~~l~~L~----gH~~~VtsLafSPd-g~~~~~LaSgS 349 (1715)
...-....+++|+++|.++++ +..++.|.+||..+++...... ++...+.+++++++ +. |+.++
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~----l~v~~ 89 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ----LFVAD 89 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE----EEEEE
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc----EEEEE
Confidence 334456789999999988888 5778999999988887543322 25567999999998 53 44444
Q ss_pred CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC-----------
Q 048801 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD----------- 418 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D----------- 418 (1715)
..+.|.+||.. ++....... .. .......+.+++++++|+++++...+
T Consensus 90 ~~~~l~~~d~~-g~~~~~~~~-~~-------------------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~ 148 (314)
T 1pjx_A 90 MRLGLLVVQTD-GTFEEIAKK-DS-------------------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM 148 (314)
T ss_dssp TTTEEEEEETT-SCEEECCSB-CT-------------------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred CCCCEEEEeCC-CCEEEEEec-cC-------------------CCccccCCcCEEECCCCCEEEEecCcccccccccccc
Confidence 44478899987 553211000 00 00112457899999999988877654
Q ss_pred ----CeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEc----cCcccccccccccccccccccccCCcccCceEE
Q 048801 419 ----TFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS----GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIV 490 (1715)
Q Consensus 419 ----G~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafs----pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~La 490 (1715)
+.|..|+.. ++. ..+..+......++|+ +++ ...++
T Consensus 149 ~~~~~~l~~~~~~-g~~----------~~~~~~~~~~~~i~~~~~~d~dg-------------------------~~l~v 192 (314)
T 1pjx_A 149 QEKFGSIYCFTTD-GQM----------IQVDTAFQFPNGIAVRHMNDGRP-------------------------YQLIV 192 (314)
T ss_dssp SSSCEEEEEECTT-SCE----------EEEEEEESSEEEEEEEECTTSCE-------------------------EEEEE
T ss_pred cCCCCeEEEECCC-CCE----------EEeccCCCCcceEEEecccCCCC-------------------------CEEEE
Confidence 567777654 221 1112223346778888 765 12445
Q ss_pred EEcCCCeEEEEecC-CCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC-CCeeEEEeCCCCCEEEEEecCCe
Q 048801 491 TCSRDGSAIIWIPR-SRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP-RGVNMIVWSLDNRFVLAAIMDCR 568 (1715)
Q Consensus 491 SgS~DGsIrIWDl~-t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~-~~VtslafSPDG~~LaTgs~DGt 568 (1715)
+...++.|.+|++. ++... ... . ...+..+. ..+..++++++|.++++...++.
T Consensus 193 ~~~~~~~i~~~~~~~~g~~~----~~~-~-------------------~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 193 AETPTKKLWSYDIKGPAKIE----NKK-V-------------------WGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EETTTTEEEEEEEEETTEEE----EEE-E-------------------EEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred EECCCCeEEEEECCCCCccc----cce-E-------------------EEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 55678999999875 22100 000 0 00111122 45678999999998888878899
Q ss_pred EEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC
Q 048801 569 ICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 569 I~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t 619 (1715)
|.+||..+++.+..+..+...+.+++|++++..++++...++.|..|++..
T Consensus 249 i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999999888888888777788999999994433666666778999999864
|
| >3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-11 Score=133.48 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=85.9
Q ss_pred CChHHHHHHhhhHHHhhhhccccchhhhhHHHHHH--hhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 048801 1608 IDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEA--AQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLS 1685 (1715)
Q Consensus 1608 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~ 1685 (1715)
+...-+..+...|..| .+.+....|..+++. ...++|+..+..||||+||++||++++|++++++..||++|++
T Consensus 18 ~~~~~~~~~~~il~~L----~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~ 93 (166)
T 3fkm_X 18 GNKQWYLLANQLILSL----SKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFD 93 (166)
T ss_dssp TTHHHHHHHHHHHHHH----TTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH----HhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 3334444444455554 344667778888764 4689999999999999999999999999999999999999999
Q ss_pred hhhhccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1686 NAESYFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1686 Na~~~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
||.+||.+++.|..+|+.|.++|.+.+..|
T Consensus 94 Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~ 123 (166)
T 3fkm_X 94 NCSLYNTSNSVVAITGKNIETYFNNQLIVM 123 (166)
T ss_dssp HHHHSSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999988654
|
| >2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... | Back alignment and structure |
|---|
Probab=99.22 E-value=8.3e-12 Score=128.43 Aligned_cols=86 Identities=27% Similarity=0.359 Sum_probs=79.0
Q ss_pred cchhhhhHHHHHH--hhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEA--AQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDW 1707 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~ 1707 (1715)
.+....|..+++. ...++|...+..||||+||++||++++|++++++..||++|++||.+||.+++.|..+|+.|.++
T Consensus 36 ~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~ 115 (127)
T 2oss_A 36 HQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKL 115 (127)
T ss_dssp STTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 4566677777764 36899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC
Q 048801 1708 FNRTLNKL 1715 (1715)
Q Consensus 1708 ~~~~i~~~ 1715 (1715)
|.+.+.+|
T Consensus 116 f~~~~~~l 123 (127)
T 2oss_A 116 FLQKINEL 123 (127)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHC
Confidence 99999875
|
| >3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-11 Score=126.33 Aligned_cols=104 Identities=17% Similarity=0.234 Sum_probs=85.9
Q ss_pred HHHHHHhhhHHHhhhhccccchhhhhHHHHHHhh--hccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhh
Q 048801 1611 ESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQ--KLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAE 1688 (1715)
Q Consensus 1611 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~ 1688 (1715)
+..+++...|.++... ........|..+++... .++|...+..|||++||++||+++.|++++++..||++|++||.
T Consensus 9 ~~l~~c~~il~~l~~~-~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 87 (120)
T 3jvl_A 9 EQLKCCSGILKEMFAK-KHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCY 87 (120)
T ss_dssp HHHHHHHHHHHHHTSG-GGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-cCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 3444555555555432 11122455777776665 79999999999999999999999999999999999999999999
Q ss_pred hccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1689 SYFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1689 ~~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
+||.+++.|..+|+.|.+.|.+.+.+|
T Consensus 88 ~yN~~~s~~~~~A~~L~~~f~~~~~~~ 114 (120)
T 3jvl_A 88 KYNPPDHEVVAMARKLQDVFEMRFAKM 114 (120)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999998875
|
| >3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A | Back alignment and structure |
|---|
Probab=99.21 E-value=6.7e-12 Score=127.45 Aligned_cols=86 Identities=16% Similarity=0.269 Sum_probs=79.8
Q ss_pred cchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFN 1709 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~ 1709 (1715)
.+....|..+++....++|...+..|||++||++||+++.|++++++..||++|++||.+||.+++.|..+|+.|.+.|.
T Consensus 28 ~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~ 107 (117)
T 3g0l_A 28 HEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFE 107 (117)
T ss_dssp STTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHH
T ss_pred CCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 35677788888877789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q 048801 1710 RTLNKL 1715 (1715)
Q Consensus 1710 ~~i~~~ 1715 (1715)
+.+.+|
T Consensus 108 ~~~~~~ 113 (117)
T 3g0l_A 108 KKWTDT 113 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988653
|
| >3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-11 Score=126.67 Aligned_cols=104 Identities=19% Similarity=0.241 Sum_probs=87.3
Q ss_pred HHHHHhhhHHHhhhhc--cccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhh
Q 048801 1612 SRDKLLSSFNKLEQSV--SRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAES 1689 (1715)
Q Consensus 1612 ~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~ 1689 (1715)
.+.++...+..+.... ...+....|..+.+....++|...+..||||+||++||+++.|++++++..||++|++||.+
T Consensus 16 l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 95 (124)
T 3mb4_A 16 MQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACT 95 (124)
T ss_dssp HHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3444444444444321 22455677888888888899999999999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1690 YFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1690 ~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
||.+++.|..+|+.|.+.|.+.+.+|
T Consensus 96 yN~~~s~i~~~A~~L~~~f~~~~~~l 121 (124)
T 3mb4_A 96 YNEPESLIYKDALVLHKVLLETRRDL 121 (124)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-09 Score=135.31 Aligned_cols=304 Identities=14% Similarity=0.057 Sum_probs=188.9
Q ss_pred CCCCEEEEEeC-C----CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEe----------CCCeeEEEECCCC
Q 048801 253 RSGRFVITGSD-D----RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASAS----------NDFVIRVWRLPDG 317 (1715)
Q Consensus 253 pDG~~LaTGS~-D----GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS----------~DGtIrVWDl~tg 317 (1715)
++++++++... + +.|.++|+.+++.+.++.....+ .++++|||++|+++. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 45666665544 2 69999999999999998865556 899999999888776 3678999999999
Q ss_pred CceEEEeCC-------CCCeEEEEecCCCCcceEEEEecC--CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCC
Q 048801 318 LPISVLRGH-------TGAVTAIAFSPRPSAIYQLLSSSD--DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 318 ~~l~~L~gH-------~~~VtsLafSPdg~~~~~LaSgS~--DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
+.+..+.-. ......++|+|+++ +|+++.. ++.|.+.|+.+++.+..+.++.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk---~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g---------------- 220 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNK---NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD---------------- 220 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSS---EEEEEECSSSCEEEEEETTTTEEEEEEECCS----------------
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCC---EEEEEecCCCCeEEEEECCCCeEEEEEEcCC----------------
Confidence 988887521 23456789999998 5665543 6889999999988776664321
Q ss_pred CCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCe-eEEEEccCccccccc
Q 048801 389 PSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDV-NYVQFSGCAVASRSA 466 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V-~sLafspdg~as~~~ 466 (1715)
+....|+| ..+++.+.||.+.+.+..+++.... ....+.....++ ..+.|.+++
T Consensus 221 -------------~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~-----~~~~~~v~~~p~~~~~~~~~dg------ 276 (426)
T 3c75_H 221 -------------CYHIFPASPTVFYMNCRDGSLARVDFADGETKVT-----NTEVFHTEDELLINHPAFSLRS------ 276 (426)
T ss_dssp -------------EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEE-----ECCCCSCTTSCBCSCCEECTTT------
T ss_pred -------------ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE-----eeeeeccCCCceeeEeeecCCC------
Confidence 11222322 3444455566666666533321000 000000001111 123344443
Q ss_pred ccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC
Q 048801 467 MSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR 546 (1715)
Q Consensus 467 ~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~ 546 (1715)
..++..+..|.+.+.|+.+..... ...|. +. .... ........
T Consensus 277 --------------------~~~~~~s~~g~V~ViD~~~~~~~v-~~~~~----~~-----------~~~~-i~~g~~p~ 319 (426)
T 3c75_H 277 --------------------GRLVWPTYTGKIFQADLTAEGATF-RAPIE----AL-----------TEAE-RADDWRPG 319 (426)
T ss_dssp --------------------CEEEEEBTTSEEEEEEECSSCEEE-CCCEE----SS-----------CTTT-GGGTEEEC
T ss_pred --------------------CEEEEEeCCCcEEEEeccCCceEE-eeeee----ec-----------cccc-cccccccC
Confidence 445555667899999886532110 00000 00 0000 00000122
Q ss_pred CeeEEEeCCCCCEEEEEec----------CCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEe-CCCcEEEE
Q 048801 547 GVNMIVWSLDNRFVLAAIM----------DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG-YDGRTIVW 615 (1715)
Q Consensus 547 ~VtslafSPDG~~LaTgs~----------DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs-~DGtI~VW 615 (1715)
....++++++++.|++... .+.|.++|+.+++.+.++.... ...+|+|+|++..+++++. .++.|.|+
T Consensus 320 g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVI 398 (426)
T 3c75_H 320 GWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIY 398 (426)
T ss_dssp SSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred CceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence 2334689999988777643 3579999999999999886432 4679999995542666666 69999999
Q ss_pred ECCCCceEEEE-EcccceEEEEEEcCC
Q 048801 616 DIWEGTPIRIY-EIGRFKLVDGKFSPD 641 (1715)
Q Consensus 616 Dl~tgk~l~tl-~~h~~~V~svafSPD 641 (1715)
|+.+++.++++ ..+..+. +..+||
T Consensus 399 D~~t~kvv~tI~~vG~~P~--~i~~~~ 423 (426)
T 3c75_H 399 DAATGEELRSVDQLGRGPQ--IITTHD 423 (426)
T ss_dssp ETTTCCEEEEECCCSSSCC--EEECCC
T ss_pred ECCCCCEEEEecCCCCCCc--EEEcCC
Confidence 99999999987 4343332 444554
|
| >2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-11 Score=125.79 Aligned_cols=84 Identities=18% Similarity=0.132 Sum_probs=77.4
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNR 1710 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~ 1710 (1715)
+....|..+++....++|...+..|||++||++||+++.|++++++..||++|++||.+||.|++.|...|+.|.+.|.+
T Consensus 24 ~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~s~i~~~A~~L~~~f~~ 103 (117)
T 2i7k_A 24 DPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMK 103 (117)
T ss_dssp SGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCSSSSHHHHHHHHHHHHHH
T ss_pred cccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 45566777777777899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hhhc
Q 048801 1711 TLNK 1714 (1715)
Q Consensus 1711 ~i~~ 1714 (1715)
.+..
T Consensus 104 ~~~~ 107 (117)
T 2i7k_A 104 ILSQ 107 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-11 Score=125.44 Aligned_cols=101 Identities=19% Similarity=0.270 Sum_probs=88.9
Q ss_pred HHHHHHhhhHHHhhhhccccchhhhhHHHHHHh--hhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhh
Q 048801 1611 ESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAA--QKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAE 1688 (1715)
Q Consensus 1611 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~ 1688 (1715)
+.+.+|+..|.++.+. ++....|..+++.. ..++|...+..|||++||++||+++.|++++++..||++|++||.
T Consensus 11 el~~~l~~~l~~l~~~---~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 87 (119)
T 3p1f_A 11 ELRQALMPTLEALYRQ---DPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAW 87 (119)
T ss_dssp HHHHHHHHHHHHHHTC---TTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---CCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4577788888887652 34566677777654 689999999999999999999999999999999999999999999
Q ss_pred hccCCChHHHHHHHHHHHHHHHHhhc
Q 048801 1689 SYFIKNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1689 ~~n~~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
+||.+++.|..+|+.|.+.|.+.+..
T Consensus 88 ~yN~~~s~i~~~A~~L~~~f~~~~~~ 113 (119)
T 3p1f_A 88 LYNRKTSRVYKFCSKLAEVFEQEIDP 113 (119)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998865
|
| >2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-11 Score=127.99 Aligned_cols=103 Identities=16% Similarity=0.202 Sum_probs=90.0
Q ss_pred CCChHHHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhh--hhhhHHHHHHHHHHHH
Q 048801 1607 EIDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNN--YYRSLEAAKDDINVML 1684 (1715)
Q Consensus 1607 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~--~Yr~~~~~~~d~~~~~ 1684 (1715)
.+.+..+.++...|..|.. ++....|..+++. ..++|...+..||||+||++||+++ .|++++++..||++|+
T Consensus 16 ~m~p~~~~~c~~il~~L~~----~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif 90 (135)
T 2yyn_A 16 KLTPIDKRKCERLLLFLYC----HEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIF 90 (135)
T ss_dssp CCCHHHHHHHHHHHHHHHT----SGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh----CccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 4677777777777777754 3556667777765 6899999999999999999999994 8999999999999999
Q ss_pred hhhhhccCCChHHHHHHHHHHHHHHHHhhc
Q 048801 1685 SNAESYFIKNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1685 ~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
+||.+||.+++.|..+|+.|.++|.+.+..
T Consensus 91 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~ 120 (135)
T 2yyn_A 91 QNCAEFNEPDSEVANAGIKLENYFEELLKN 120 (135)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998865
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-08 Score=122.02 Aligned_cols=308 Identities=10% Similarity=0.036 Sum_probs=191.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCC---------CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeC
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGH---------EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRG 325 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gH---------s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~g 325 (1715)
+..|++++.++.|..+|..+|+.+..+... ...+.+.. ..++..|++++.++.|..+|..+|+.+.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 567888888999999999999988766542 22332222 22456788888999999999999998877764
Q ss_pred CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEE
Q 048801 326 HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAY 405 (1715)
Q Consensus 326 H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtslaf 405 (1715)
.........+. ++ .++.++.++.|..+|..+++.+............ ... .....
T Consensus 132 ~~~~~~~p~~~-~~----~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~----------------~~~----~~~~~ 186 (376)
T 3q7m_A 132 AGEALSRPVVS-DG----LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL----------------RGE----SAPTT 186 (376)
T ss_dssp SSCCCSCCEEE-TT----EEEEECTTSEEEEEETTTCCEEEEEECCC---------------------CCC----CCCEE
T ss_pred CCceEcCCEEE-CC----EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee----------------cCC----CCcEE
Confidence 43222222222 22 6788888999999999999877665432211000 000 01111
Q ss_pred ccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC----CeeEEEEccCcccccccccccccccccccccC
Q 048801 406 NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN----DVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 406 SpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~----~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
. +..+++++.++.|..+|..+++. +........ .+..+.-. ...
T Consensus 187 ~--~~~v~~g~~~g~l~~~d~~tG~~---------~w~~~~~~~~~~~~~~~~~~~---------------------~~~ 234 (376)
T 3q7m_A 187 A--FGAAVVGGDNGRVSAVLMEQGQM---------IWQQRISQATGSTEIDRLSDV---------------------DTT 234 (376)
T ss_dssp E--TTEEEECCTTTEEEEEETTTCCE---------EEEEECCC-----------CC---------------------CCC
T ss_pred E--CCEEEEEcCCCEEEEEECCCCcE---------EEEEecccCCCCccccccccc---------------------CCC
Confidence 1 34677788899999999987643 111111000 00000000 000
Q ss_pred CcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La 561 (1715)
.......++.++.+|.+..+|..+++.. |... ......+.. ++..|+
T Consensus 235 p~~~~~~v~~~~~~g~l~~~d~~tG~~~-----w~~~--------------------------~~~~~~~~~--~~~~l~ 281 (376)
T 3q7m_A 235 PVVVNGVVFALAYNGNLTALDLRSGQIM-----WKRE--------------------------LGSVNDFIV--DGNRIY 281 (376)
T ss_dssp CEEETTEEEEECTTSCEEEEETTTCCEE-----EEEC--------------------------CCCEEEEEE--ETTEEE
T ss_pred cEEECCEEEEEecCcEEEEEECCCCcEE-----eecc--------------------------CCCCCCceE--ECCEEE
Confidence 0011357888888999999999876532 2111 011223333 466788
Q ss_pred EEecCCeEEEEECCCCceEEEEec-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEE-EEEc
Q 048801 562 AAIMDCRICVWNAVDGSLVHSLTG-HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVD-GKFS 639 (1715)
Q Consensus 562 Tgs~DGtI~IWDl~sg~~l~tL~g-H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~s-vafS 639 (1715)
+++.++.|..+|..+|+.+..... ....+..+... + ..|+.++.+|.|.++|..+|+.+..+......+.. ...
T Consensus 282 ~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~-~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~- 357 (376)
T 3q7m_A 282 LVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--N-GNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA- 357 (376)
T ss_dssp EEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--T-TEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE-
T ss_pred EEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--C-CEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE-
Confidence 888899999999999999887762 22223333332 3 45667888999999999999999888753333332 222
Q ss_pred CCCCEEEEEeCCCeEEEEE
Q 048801 640 PDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 640 PDG~~LAsgs~DG~I~IWd 658 (1715)
.+..|++++.+|.|+.|+
T Consensus 358 -~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 358 -ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp -ETTEEEEEBTTSCEEEEE
T ss_pred -ECCEEEEEeCCCEEEEEe
Confidence 255788889999999987
|
| >1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-11 Score=125.89 Aligned_cols=85 Identities=18% Similarity=0.314 Sum_probs=79.3
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNR 1710 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~ 1710 (1715)
+....|..+++....++|...+..|||++||++||+++.|++++++..||++|++||.+||.+++.|..+|+.|.++|.+
T Consensus 29 ~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~ 108 (121)
T 1e6i_A 29 AAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNN 108 (121)
T ss_dssp TTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred CCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 55667788887778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcC
Q 048801 1711 TLNKL 1715 (1715)
Q Consensus 1711 ~i~~~ 1715 (1715)
.+..|
T Consensus 109 ~~~~~ 113 (121)
T 1e6i_A 109 KVKEI 113 (121)
T ss_dssp HHHTS
T ss_pred HHHHc
Confidence 98764
|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-11 Score=133.23 Aligned_cols=105 Identities=15% Similarity=0.266 Sum_probs=92.7
Q ss_pred CCChHHHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q 048801 1607 EIDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSN 1686 (1715)
Q Consensus 1607 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~N 1686 (1715)
.+++..+++|...|..|.. .+....|..+++....++|...+..||||+||++||+++.|++++++..||++|++|
T Consensus 68 ~l~~~~~~~l~~il~~l~~----~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 143 (174)
T 2ri7_A 68 PLTEKDYEGLKRVLRSLQA----HKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDN 143 (174)
T ss_dssp BCCHHHHHHHHHHHHHHHT----SGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHh----hhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4667777777777777654 355666777777777899999999999999999999999999999999999999999
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1687 AESYFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1687 a~~~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
|.+||.+++.|.++|+.|.++|.+.+..|
T Consensus 144 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 144 CRYYNPSDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998865
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.18 E-value=5.1e-09 Score=121.95 Aligned_cols=247 Identities=10% Similarity=0.094 Sum_probs=160.6
Q ss_pred EcCCCCCeEEEEEcCCCCEEEE-------EeCCCcEEEEeCCCCcEEEEec----CCCCCeEEEEECCC-CCEEEEEeCC
Q 048801 239 LRGHRDAVYCAIFDRSGRFVIT-------GSDDRLVKIWSMETAFCLASCR----GHEGDITDLAVSSN-NTLVASASND 306 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaT-------GS~DGtIrIWDl~tgk~l~tL~----gHs~~VtsLafSpD-g~lLASGS~D 306 (1715)
+.+.-....+++|+++|.++++ +..++.|.+|+..+++...... ++...+.+++++++ |+++++.. .
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~ 91 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-R 91 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-T
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-C
Confidence 3444556789999999988888 5678899999988887643322 25577999999999 76555544 4
Q ss_pred CeeEEEECCCCCceEE-EeC----CCCCeEEEEecCCCCcceEEEEecCC---------------CcEEEEecCCCCCcc
Q 048801 307 FVIRVWRLPDGLPISV-LRG----HTGAVTAIAFSPRPSAIYQLLSSSDD---------------GTCRIWDARYSQYSP 366 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~-L~g----H~~~VtsLafSPdg~~~~~LaSgS~D---------------GtVrIWDl~tg~~l~ 366 (1715)
+.|.+||.. ++.... ... ....+.++++.+++. ++++...+ +.|..|+.. ++...
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~---l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~ 166 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN---LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ 166 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC---EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC---EEEEecCcccccccccccccCCCCeEEEECCC-CCEEE
Confidence 479999988 664332 221 123588999999986 55555444 456666654 33211
Q ss_pred eecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEc----cCCCeE-EEecCCCeEEEEeCC-CCCccCCCCCcee
Q 048801 367 RIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYN----ANGTVF-VTGSSDTFARVWSAC-KSSVEDSEQPIHE 440 (1715)
Q Consensus 367 ~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafS----pdG~~L-atGs~DG~IrVWDl~-t~~~~~~~~~~~~ 440 (1715)
.. .+......++|+ ++|+.| ++...++.|.+|++. ++.. .....
T Consensus 167 ~~--------------------------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~----~~~~~ 216 (314)
T 1pjx_A 167 VD--------------------------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI----ENKKV 216 (314)
T ss_dssp EE--------------------------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE----EEEEE
T ss_pred ec--------------------------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc----ccceE
Confidence 10 011235788999 999654 444567899999975 2211 00112
Q ss_pred eeeecCCC-CCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccc
Q 048801 441 LDVLSGHE-NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAY 519 (1715)
Q Consensus 441 l~~l~gH~-~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~ 519 (1715)
...+..+. ..+..+++++++ ..+++...++.|.+||..+++...
T Consensus 217 ~~~~~~~~~~~p~~i~~d~~G--------------------------~l~v~~~~~~~i~~~d~~~g~~~~--------- 261 (314)
T 1pjx_A 217 WGHIPGTHEGGADGMDFDEDN--------------------------NLLVANWGSSHIEVFGPDGGQPKM--------- 261 (314)
T ss_dssp EEECCCCSSCEEEEEEEBTTC--------------------------CEEEEEETTTEEEEECTTCBSCSE---------
T ss_pred EEECCCCCCCCCCceEECCCC--------------------------CEEEEEcCCCEEEEEcCCCCcEeE---------
Confidence 22333443 557788888876 567777778999999987543211
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEE-ecCCeEEEEECCC
Q 048801 520 HLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAA-IMDCRICVWNAVD 576 (1715)
Q Consensus 520 ~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTg-s~DGtI~IWDl~s 576 (1715)
.+..+...+.+++|+++|+.|+++ ..++.|.+|++..
T Consensus 262 --------------------~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 262 --------------------RIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp --------------------EEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred --------------------EEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 111223568899999999955544 4567899999764
|
| >3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-11 Score=126.48 Aligned_cols=100 Identities=20% Similarity=0.219 Sum_probs=87.5
Q ss_pred HHHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhc
Q 048801 1611 ESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESY 1690 (1715)
Q Consensus 1611 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~ 1690 (1715)
.-++++...|..|.. .++...|..+++....++|...+..||||+||++||+++.|++++++..||++|++||.+|
T Consensus 10 ~~~~~c~~il~~l~~----~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 85 (123)
T 3q2e_A 10 NWKKQCKELVNLIFQ----CEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAY 85 (123)
T ss_dssp CHHHHHHHHHHHHHT----SGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh----CCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 345555555555543 3667788888888889999999999999999999999999999999999999999999999
Q ss_pred cCC-ChHHHHHHHHHHHHHHHHhhc
Q 048801 1691 FIK-NAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1691 n~~-~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
|.+ ++.|..+|+.|.++|.+.+..
T Consensus 86 N~~~~s~i~~~A~~L~~~f~~~~~~ 110 (123)
T 3q2e_A 86 TPNKRSKIYSMTLRLSALFEEKMKK 110 (123)
T ss_dssp SCCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 996 999999999999999998875
|
| >2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-11 Score=125.73 Aligned_cols=102 Identities=17% Similarity=0.219 Sum_probs=83.3
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHh--hhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhc
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAA--QKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESY 1690 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~ 1690 (1715)
..++...|.+|... .....+..|..+++.. ..++|...+..||||+||++||+++.|++++++..||++|++||.+|
T Consensus 24 l~~c~~il~~L~~~-~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~y 102 (130)
T 2ouo_A 24 LKCCSGILKEMFAK-KHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKY 102 (130)
T ss_dssp HHHHHHHHHHHTSG-GGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34444455555432 1112345577776543 47999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1691 FIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1691 n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
|.+++.|..+|+.|.++|.+.+..|
T Consensus 103 N~~~s~i~~~A~~L~~~f~~~~~~l 127 (130)
T 2ouo_A 103 NPPDHEVVAMARKLQDVFEMRFAKM 127 (130)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999998875
|
| >2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.9e-12 Score=126.75 Aligned_cols=84 Identities=19% Similarity=0.231 Sum_probs=77.1
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNR 1710 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~ 1710 (1715)
+....|..+++....++|...+..||||+||++||+++.|++++++..||++|++||.+||.+++.+.++|+.|.+.|.+
T Consensus 23 ~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~ 102 (121)
T 2d9e_A 23 DTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGA 102 (121)
T ss_dssp CSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred CccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 44566777777777899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Hhhc
Q 048801 1711 TLNK 1714 (1715)
Q Consensus 1711 ~i~~ 1714 (1715)
.+.+
T Consensus 103 ~l~~ 106 (121)
T 2d9e_A 103 VLRQ 106 (121)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-11 Score=125.65 Aligned_cols=85 Identities=22% Similarity=0.376 Sum_probs=79.5
Q ss_pred cchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFN 1709 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~ 1709 (1715)
...+..|..+++....++|...+..|||++||++||+++.|++++++..||++|++||.+||.+++.|..+|+.|.++|.
T Consensus 30 ~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~ 109 (126)
T 3mqm_A 30 QALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAYY 109 (126)
T ss_dssp CBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHH
T ss_pred CChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 44567788888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc
Q 048801 1710 RTLNK 1714 (1715)
Q Consensus 1710 ~~i~~ 1714 (1715)
+.+.+
T Consensus 110 ~~~~~ 114 (126)
T 3mqm_A 110 NARHE 114 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.8e-09 Score=129.42 Aligned_cols=287 Identities=13% Similarity=0.043 Sum_probs=188.8
Q ss_pred CCCCEEEEEeCC-----CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec----------CCCcEEEEec
Q 048801 295 SNNTLVASASND-----FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS----------DDGTCRIWDA 359 (1715)
Q Consensus 295 pDg~lLASGS~D-----GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS----------~DGtVrIWDl 359 (1715)
+++..+++.... +.|.++|+.+++.+..+.....+ .++++|+++. |+++. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~---lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSF---FAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSC---EEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCE---EEEEeccccccccCCCCCEEEEEEC
Confidence 466666655442 69999999999999998755555 8999999984 44333 4678999999
Q ss_pred CCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC--CCeEEEEeCCCCCccCCCCC
Q 048801 360 RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS--DTFARVWSACKSSVEDSEQP 437 (1715)
Q Consensus 360 ~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~--DG~IrVWDl~t~~~~~~~~~ 437 (1715)
.+++.+..+.++...... .......++|+|||++|+++.. ++.|.++|+.+.+.
T Consensus 157 ~t~~vv~~I~v~g~~r~~------------------~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv------ 212 (426)
T 3c75_H 157 VTFLPIADIELPDAPRFL------------------VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF------ 212 (426)
T ss_dssp TTCCEEEEEEETTCCCCC------------------BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE------
T ss_pred CCCcEEEEEECCCccccc------------------cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE------
Confidence 999887776553111000 0112356799999999888763 57899999987543
Q ss_pred ceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccc
Q 048801 438 IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTR 517 (1715)
Q Consensus 438 ~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~ 517 (1715)
+..+.-.. +....|.+ ...+++.+.||.+.+.++.+++..... ..
T Consensus 213 ---v~~I~v~g----~~~~~p~g-------------------------~~~~v~~~~dG~~~~V~~~~~~v~~~~---~~ 257 (426)
T 3c75_H 213 ---DRMLDVPD----CYHIFPAS-------------------------PTVFYMNCRDGSLARVDFADGETKVTN---TE 257 (426)
T ss_dssp ---EEEEECCS----EEEEEEEE-------------------------TTEEEEEETTSSEEEEECCTTCCEEEE---CC
T ss_pred ---EEEEEcCC----ceeeccCC-------------------------CcEEEEEcCCCCEEEEECCCCcEEEEe---ee
Confidence 22222111 12233333 246777778999888888543322100 00
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEE--EEec----------
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVH--SLTG---------- 585 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~--tL~g---------- 585 (1715)
.+. ... ......+.|++++..++..+..+.|.+.|+....... .+.-
T Consensus 258 ~~~--------------------v~~-~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~ 316 (426)
T 3c75_H 258 VFH--------------------TED-ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDW 316 (426)
T ss_dssp CCS--------------------CTT-SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTE
T ss_pred eec--------------------cCC-CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccc
Confidence 000 000 0011235778998888877888999999986554221 1110
Q ss_pred CCCCeEEEEEccCCCcEEEEEe---------CCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCC-EEEEEe-CCCeE
Q 048801 586 HSASSYVLDVHPFNPRIAMSAG---------YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGT-SIVLSD-DVGQI 654 (1715)
Q Consensus 586 H~~~V~sLafSP~dg~lLaSgs---------~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~-~LAsgs-~DG~I 654 (1715)
.......++++|++++++++.. .++.|.++|+.+++.+.++..+. ....++|+|||+ +|+++. .++.|
T Consensus 317 ~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~V 395 (426)
T 3c75_H 317 RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTL 395 (426)
T ss_dssp EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEE
T ss_pred ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeE
Confidence 0111223689996666666543 13579999999999999998543 578899999999 888887 58999
Q ss_pred EEEECCCCccccc
Q 048801 655 YLLNTGQGESQKD 667 (1715)
Q Consensus 655 ~IWdl~tGe~~k~ 667 (1715)
.|+|+.+++.++.
T Consensus 396 sVID~~t~kvv~t 408 (426)
T 3c75_H 396 HIYDAATGEELRS 408 (426)
T ss_dssp EEEETTTCCEEEE
T ss_pred EEEECCCCCEEEE
Confidence 9999999986654
|
| >3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-11 Score=127.23 Aligned_cols=85 Identities=21% Similarity=0.297 Sum_probs=78.6
Q ss_pred cchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFN 1709 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~ 1709 (1715)
.+....|..+++....++|...+..|||++||++||++++|++++++..||++|++||.+||.+++.+.+.|+.|.+.|.
T Consensus 28 ~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~ 107 (135)
T 3rcw_A 28 KDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGG 107 (135)
T ss_dssp TCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 35666778888777889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhc
Q 048801 1710 RTLNK 1714 (1715)
Q Consensus 1710 ~~i~~ 1714 (1715)
+.+.+
T Consensus 108 ~~~~~ 112 (135)
T 3rcw_A 108 VVLRQ 112 (135)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
|
| >3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.6e-11 Score=126.23 Aligned_cols=99 Identities=17% Similarity=0.222 Sum_probs=86.4
Q ss_pred HHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhcc
Q 048801 1612 SRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYF 1691 (1715)
Q Consensus 1612 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n 1691 (1715)
.++++...|..|.. .+....|..+++....++|...+..||||+||++||+++.|.+++++..||++|++||.+||
T Consensus 22 l~~~~~~il~~l~~----~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 97 (135)
T 3mb3_A 22 WKKQCEELLNLIFQ----CEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYT 97 (135)
T ss_dssp HHHHHHHHHHHHHH----SGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHh----CCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34455555555543 35677888888888899999999999999999999999999999999999999999999999
Q ss_pred CC-ChHHHHHHHHHHHHHHHHhhc
Q 048801 1692 IK-NAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1692 ~~-~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
.+ ++.|..+|+.|.++|.+.+..
T Consensus 98 ~~~~s~i~~~A~~L~~~f~~~~~~ 121 (135)
T 3mb3_A 98 PSKRSRIYSMSLRLSAFFEEHISS 121 (135)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 98 899999999999999998865
|
| >3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A | Back alignment and structure |
|---|
Probab=99.12 E-value=5.2e-11 Score=126.77 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=88.2
Q ss_pred HHHHhhhHHHhhhh-ccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhcc
Q 048801 1613 RDKLLSSFNKLEQS-VSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYF 1691 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n 1691 (1715)
...|...|..+... ....+....|..+++....++|...+..||||+||++||++++|++++++..||++|++||.+||
T Consensus 27 ~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN 106 (158)
T 3uv4_A 27 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN 106 (158)
T ss_dssp HHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34444555554432 34456777888888888889999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1692 IKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1692 ~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
.+++.|.+.|+.|.+.|.+.+..+
T Consensus 107 ~~~s~i~~~A~~L~~~~~~~l~e~ 130 (158)
T 3uv4_A 107 GPESQYTKTAQEIVNVCYQTLTEY 130 (158)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988753
|
| >3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.3e-11 Score=123.28 Aligned_cols=84 Identities=17% Similarity=0.111 Sum_probs=76.6
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNR 1710 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~ 1710 (1715)
+....|..+++....++|...+..|||++||++||+++.|++++++..||++|++||.+||.|++.+.+.|+.|.+.|.+
T Consensus 29 ~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~ 108 (123)
T 3hme_A 29 DPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFK 108 (123)
T ss_dssp CTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred CccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 44455677776667899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hhhc
Q 048801 1711 TLNK 1714 (1715)
Q Consensus 1711 ~i~~ 1714 (1715)
.+++
T Consensus 109 ~~~~ 112 (123)
T 3hme_A 109 MMSK 112 (123)
T ss_dssp HTCH
T ss_pred HHHH
Confidence 8764
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.8e-08 Score=124.14 Aligned_cols=255 Identities=11% Similarity=0.046 Sum_probs=166.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCC--eeEEEECCCCCceE
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDF--VIRVWRLPDGLPIS 321 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DG--tIrVWDl~tg~~l~ 321 (1715)
.....|+|+++|+++++...++.|++||..++.......... ... ++|++++..|++++.++ .|.+|+...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 467899999999988887778999999999887766655433 333 99999999999988866 78899987766544
Q ss_pred EE----eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCC
Q 048801 322 VL----RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQS 397 (1715)
Q Consensus 322 ~L----~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~ 397 (1715)
.+ ......+.+++++|++. .|+.+..++.|+.||..++... .+...... +. ...
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g---~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~----g~--------------~~~ 266 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEE---WLYFVDSNKNFGRFNVKTQEVT-LIKQLELS----GS--------------LGT 266 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSS---EEEEECTTCEEEEEETTTCCEE-EEEECCCC----SC--------------CCC
T ss_pred EeeeccchhcCCcEEEEEeCCCC---eEEEEECCCcEEEEECCCCCEE-EEeccccc----CC--------------CCC
Confidence 44 22456788999999554 4555677889999998866521 11000000 00 000
Q ss_pred cceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCC---------------CCCeeEEEEccCcc
Q 048801 398 HQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGH---------------ENDVNYVQFSGCAV 461 (1715)
Q Consensus 398 ~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH---------------~~~V~sLafspdg~ 461 (1715)
.+...++|+| ++.++++-..++.|+.|+.... +..+.++ -.....+++++++
T Consensus 267 ~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-----------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG- 334 (409)
T 3hrp_A 267 NPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-----------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG- 334 (409)
T ss_dssp SSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-----------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-
T ss_pred CccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-----------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-
Confidence 0112899999 5777777777899999987532 1111121 2346778888876
Q ss_pred cccccccccccccccccccCCcccCceEEEEc-CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
.++++-. .++.|+.|++.++......+.... . ....+. .
T Consensus 335 -------------------------~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~---------~---g~~~g~---~ 374 (409)
T 3hrp_A 335 -------------------------NFYIVDGFKGYCLRKLDILDGYVSTVAGQVDV---------A---SQIDGT---P 374 (409)
T ss_dssp -------------------------CEEEEETTTTCEEEEEETTTTEEEEEEECTTC---------B---SCCCBS---T
T ss_pred -------------------------CEEEEeCCCCCEEEEEECCCCEEEEEeCCCCC---------C---CcCCCC---h
Confidence 5777777 889999999766542211111000 0 000000 0
Q ss_pred ccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEEC
Q 048801 541 LLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 574 (1715)
Q Consensus 541 l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl 574 (1715)
....-.....|+++++|.++++-..++.|+.+++
T Consensus 375 ~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 375 LEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred hceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 1112245788999999988888888888888764
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.1e-09 Score=128.71 Aligned_cols=270 Identities=14% Similarity=0.041 Sum_probs=167.0
Q ss_pred CCeEEEEECCCCCEEEEEe--CCCeeEEEECCCCCceEEE-------eCCCCCeEEEEecCCCCcceEEEEecC-----C
Q 048801 286 GDITDLAVSSNNTLVASAS--NDFVIRVWRLPDGLPISVL-------RGHTGAVTAIAFSPRPSAIYQLLSSSD-----D 351 (1715)
Q Consensus 286 ~~VtsLafSpDg~lLASGS--~DGtIrVWDl~tg~~l~~L-------~gH~~~VtsLafSPdg~~~~~LaSgS~-----D 351 (1715)
..+..|+++++|+++++.. .++.++||.+.++. +..+ .+|-..+.+|+|.+++. ++++-.. +
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~---L~v~D~g~~~~~~ 92 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGI---VWMLDNGNQSKSV 92 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSE---EEEEECHHHHTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCc---EEEEcCCCCcCCC
Confidence 6789999999999988864 23436677665554 2222 13456799999999875 3343322 5
Q ss_pred CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC-CCeEEEec---CCCeEEEEeCC
Q 048801 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN-GTVFVTGS---SDTFARVWSAC 427 (1715)
Q Consensus 352 GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd-G~~LatGs---~DG~IrVWDl~ 427 (1715)
+.|.+||+.+++.+..+.++... ..+...+..++++++ +..+++.. .++.|.+||+.
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~-------------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~ 153 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPI-------------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ 153 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTT-------------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT
T ss_pred CeEEEEECCCCeEEEEEECChhh-------------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC
Confidence 78999999988866655443211 011234678999976 44555554 57899999997
Q ss_pred CCCccCCCCCceeeeeecCCCCCee-EEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCC
Q 048801 428 KSSVEDSEQPIHELDVLSGHENDVN-YVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 506 (1715)
Q Consensus 428 t~~~~~~~~~~~~l~~l~gH~~~V~-sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~ 506 (1715)
+++. ...+.+|..... ...+..++ ..+.+.+.+|.+..|.
T Consensus 154 ~g~~---------~r~~~~~~~~~~~~~~~~~~g--------------------------~~~~~~~~~g~~~~~~---- 194 (343)
T 2qe8_A 154 TGLA---------ARVLQGYPGIAPEDIDLVIDG--------------------------VPVQIGQPDGTVIRPH---- 194 (343)
T ss_dssp TCCE---------EEECTTCTTTSCCSCCCEETT--------------------------EECBEECTTSCEECCC----
T ss_pred CCCE---------EEEecCCCcccccccceeECC--------------------------EEEEeccCCCceecee----
Confidence 6532 233333321100 01111111 3444555666655442
Q ss_pred ccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC-eEEEEECC---CCc----
Q 048801 507 RSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNAV---DGS---- 578 (1715)
Q Consensus 507 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG-tI~IWDl~---sg~---- 578 (1715)
..+..|+|+|||++|+++...+ .|+.++.. .+.
T Consensus 195 ---------------------------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~ 235 (343)
T 2qe8_A 195 ---------------------------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDA 235 (343)
T ss_dssp ---------------------------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHH
T ss_pred ---------------------------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChh
Confidence 1357899999999888887766 55555532 111
Q ss_pred -eE--EEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcc-cceEEEEEEcCCCCEEEEEeCCCeE
Q 048801 579 -LV--HSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG-RFKLVDGKFSPDGTSIVLSDDVGQI 654 (1715)
Q Consensus 579 -~l--~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h-~~~V~svafSPDG~~LAsgs~DG~I 654 (1715)
.. ....++.+....+++++ ++.++++...++.|.+||..+|+........ -..+.+++|.++|.++++....+.+
T Consensus 236 ~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 236 ELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp HHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred hhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 00 01223444556789999 6788888888999999998667654433322 2357899999999887777654444
Q ss_pred EEE
Q 048801 655 YLL 657 (1715)
Q Consensus 655 ~IW 657 (1715)
.+|
T Consensus 315 ~~f 317 (343)
T 2qe8_A 315 APL 317 (343)
T ss_dssp GGG
T ss_pred ccc
Confidence 333
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=4.7e-09 Score=137.55 Aligned_cols=352 Identities=10% Similarity=0.060 Sum_probs=201.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCC-----------eEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEGD-----------ITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~-----------VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L 323 (1715)
+..|++++.++.|..+|..+|+.+-.+...... ...+++ ++..|++++.|+.|..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 557777778899999999999999887643210 112333 4668888899999999999999999888
Q ss_pred eCC-C----CCeEE-EEecCCCCcceEEEEecC------CCcEEEEecCCCCCcceecCCCCCC-Ccc-------CccCC
Q 048801 324 RGH-T----GAVTA-IAFSPRPSAIYQLLSSSD------DGTCRIWDARYSQYSPRIYLPKPPD-AIT-------GKSNV 383 (1715)
Q Consensus 324 ~gH-~----~~Vts-LafSPdg~~~~~LaSgS~------DGtVrIWDl~tg~~l~~i~~~~~~~-~i~-------g~~~~ 383 (1715)
..+ . ..+.+ ..+. ++ .++.++. +|.|+.||..+|+.+..+....... ... +....
T Consensus 155 ~~~~~~~~~~~~~~~p~v~-~~----~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVF-KG----KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEE-TT----EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred cCCcCcCcCcccccCcEEE-CC----EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 754 2 12221 1111 22 3444442 7999999999999887765432211 000 00000
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC-------------------eEEEEeCCCCCccCCCCCceeeeee
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT-------------------FARVWSACKSSVEDSEQPIHELDVL 444 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG-------------------~IrVWDl~t~~~~~~~~~~~~l~~l 444 (1715)
. .................+++++++.+|++++.++ .|..+|..+++.... ...
T Consensus 230 ~-~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~-------~~~ 301 (677)
T 1kb0_A 230 D-PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWH-------YQE 301 (677)
T ss_dssp C-GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE-------EES
T ss_pred c-ccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEE-------Eec
Confidence 0 0000000001112234678899888888887664 488888877653111 011
Q ss_pred cCCCC-------CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc----
Q 048801 445 SGHEN-------DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG---- 513 (1715)
Q Consensus 445 ~gH~~-------~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~---- 513 (1715)
..|.. ....+....++. ....++.++.+|.|.++|..+++.+....
T Consensus 302 ~~~d~wd~~~~~~p~l~~~~~dG~-----------------------~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~ 358 (677)
T 1kb0_A 302 TPGDNWDYTSTQPMILADIKIAGK-----------------------PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPV 358 (677)
T ss_dssp STTCCSCCCCCSCCEEEEEEETTE-----------------------EEEEEEECCTTSEEEEEETTTCCEEEEEESSCC
T ss_pred CCCcccccccCCCcEEEecccCCc-----------------------EeeEEEEECCCCEEEEEECCCCCEecccccccc
Confidence 11210 000111111110 01578899999999999999987653321
Q ss_pred cccccccccCCCCCCCC--CCCCCCCcccccCCC--CCeeEEEeCCCCCEEEEEecC-----------------------
Q 048801 514 RWTRAYHLKVPPPPLPP--QPPRGGPRQRLLPTP--RGVNMIVWSLDNRFVLAAIMD----------------------- 566 (1715)
Q Consensus 514 ~~~~~~~l~~~~~~~~~--~~~~g~~~~~l~~h~--~~VtslafSPDG~~LaTgs~D----------------------- 566 (1715)
.|...+. . ...+... ....+.......... ..-..++|+|++.+|++...+
T Consensus 359 ~~~~~~d-~-~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~ 436 (677)
T 1kb0_A 359 NWASGYD-K-HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQS 436 (677)
T ss_dssp SSEEEEC-T-TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTG
T ss_pred CcccccC-C-CCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccc
Confidence 0110000 0 0000000 000000000011111 112357889998888776432
Q ss_pred --------------------CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEE
Q 048801 567 --------------------CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY 626 (1715)
Q Consensus 567 --------------------GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl 626 (1715)
|.|..||+.+|+.+..+... .++....+.. .+.+++.++.||.|++||..+|+.+..+
T Consensus 437 ~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~ 514 (677)
T 1kb0_A 437 GTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEA 514 (677)
T ss_dssp GGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeee
Confidence 78999999999999888633 3344445555 4456677899999999999999999999
Q ss_pred Ecccce-EEEEEEcCCCCEEEEE
Q 048801 627 EIGRFK-LVDGKFSPDGTSIVLS 648 (1715)
Q Consensus 627 ~~h~~~-V~svafSPDG~~LAsg 648 (1715)
..+.+. ..-+.|+.+|+.+++.
T Consensus 515 ~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 515 PTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp ECSSCCCSCCEEEEETTEEEEEE
T ss_pred eCCCCcccCCEEEEeCCEEEEEE
Confidence 865432 2345677888765543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-08 Score=133.18 Aligned_cols=352 Identities=12% Similarity=0.085 Sum_probs=201.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCC----------e-EEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEGD----------I-TDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~----------V-tsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L 323 (1715)
+..|++++.++.|..+|..+|+.+-.+..+... + ..+++ ++..|++++.|+.|..+|..+|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 567788888999999999999999887643221 1 11222 3568888999999999999999998877
Q ss_pred eCC--CCCeEEEEecC---CCCcceEEEEec------CCCcEEEEecCCCCCcceecCCC-CCCCc-cCccC---CCCCC
Q 048801 324 RGH--TGAVTAIAFSP---RPSAIYQLLSSS------DDGTCRIWDARYSQYSPRIYLPK-PPDAI-TGKSN---VPSNN 387 (1715)
Q Consensus 324 ~gH--~~~VtsLafSP---dg~~~~~LaSgS------~DGtVrIWDl~tg~~l~~i~~~~-~~~~i-~g~~~---~~~~~ 387 (1715)
... ......+..+| ++ .++.++ .+|.|..||..+|+.+..+.... ..... ..... .....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g----~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG----KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWF 223 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT----EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCC
T ss_pred cCcCCCCCCccccCCcEEECC----EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccC
Confidence 642 11111111122 33 344443 37899999999999877664311 11000 00000 00000
Q ss_pred CCCCCC-CCCCcceeEEEEccCCCeEEEecCCCe-------------------EEEEeCCCCCccCCCCCceeeeeecC-
Q 048801 388 GPSSSN-GLQSHQILCCAYNANGTVFVTGSSDTF-------------------ARVWSACKSSVEDSEQPIHELDVLSG- 446 (1715)
Q Consensus 388 ~~~~~~-~~h~~~VtslafSpdG~~LatGs~DG~-------------------IrVWDl~t~~~~~~~~~~~~l~~l~g- 446 (1715)
...... .........+++++++.+|++++.++. |..||..+++. +..+..
T Consensus 224 g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~---------~W~~~~~ 294 (689)
T 1yiq_A 224 GDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY---------VWHYQTT 294 (689)
T ss_dssp SSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE---------EEEEESS
T ss_pred CceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce---------eEeeecC
Confidence 000000 011122246789998888888887764 88999988753 222211
Q ss_pred -CCC-------CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc----c
Q 048801 447 -HEN-------DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG----R 514 (1715)
Q Consensus 447 -H~~-------~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~----~ 514 (1715)
|.. .+.......++. ....++.++.+|.+.++|..+++.+.... .
T Consensus 295 ~~d~wd~~~~~~~~l~d~~~~G~-----------------------~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~ 351 (689)
T 1yiq_A 295 PGDAWDYTATQHMILAELPIDGK-----------------------PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQS 351 (689)
T ss_dssp TTCCSCCCCCSCEEEEEEEETTE-----------------------EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred CcccccccCCCCcEEEeeccCCc-----------------------EEEEEEEECCCCeEEEEECCCCCEeccccccccc
Confidence 210 111001100110 01378899999999999999988652211 1
Q ss_pred ccccccccCCCCCCCCC-----CCCCCCcccccCCC--CCeeEEEeCCCCCEEEEEec----------------------
Q 048801 515 WTRAYHLKVPPPPLPPQ-----PPRGGPRQRLLPTP--RGVNMIVWSLDNRFVLAAIM---------------------- 565 (1715)
Q Consensus 515 ~~~~~~l~~~~~~~~~~-----~~~g~~~~~l~~h~--~~VtslafSPDG~~LaTgs~---------------------- 565 (1715)
|.......... +.... ...+.......... ..-..++|+|+..+|++...
T Consensus 352 w~~~~~~~~~~-pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (689)
T 1yiq_A 352 WTKGMDMKTGR-PILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMY 430 (689)
T ss_dssp SEEEEETTTTE-EEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSC
T ss_pred cccccCccCCC-cccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccccccc
Confidence 21111000000 00000 00000000011100 11234788888888777532
Q ss_pred -----------------------CCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce
Q 048801 566 -----------------------DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTP 622 (1715)
Q Consensus 566 -----------------------DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~ 622 (1715)
+|.|+.||+.+|+.+..+..+... ..-.+.. .+.+++.|+.||.|+.||..+|+.
T Consensus 431 ~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~-~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 431 QLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF-NGGTLST-AGNLVFEGSADGRVIAYAADTGEK 508 (689)
T ss_dssp CCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC-CCCEEEE-TTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc-cCccceE-CCCEEEEECCCCcEEEEECCCCcc
Confidence 378999999999999988765432 2334444 456777899999999999999999
Q ss_pred EEEEEcccceE-EEEEEcCCCCEEEE
Q 048801 623 IRIYEIGRFKL-VDGKFSPDGTSIVL 647 (1715)
Q Consensus 623 l~tl~~h~~~V-~svafSPDG~~LAs 647 (1715)
+..+..+.+.+ .-+.|+.||+..++
T Consensus 509 lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 509 LWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred ceeeeCCCCcccCceEEEECCEEEEE
Confidence 99998654332 34677889886553
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.04 E-value=5.6e-08 Score=113.71 Aligned_cols=242 Identities=8% Similarity=-0.020 Sum_probs=156.5
Q ss_pred cCCCCCeEEEEECCC-CCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecC
Q 048801 282 RGHEGDITDLAVSSN-NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 282 ~gHs~~VtsLafSpD-g~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
..+..-.-+..|+++ +.++++...++.|..||..++.. ..+. ....+.++++++++. ++++ . ++.|.+||..
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~---l~v~-~-~~~l~~~d~~ 81 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGG---YVAT-I-GTKFCALNWK 81 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSS---EEEE-E-TTEEEEEETT
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCC---EEEE-E-CCeEEEEECC
Confidence 334445668899995 45666666789999999987764 3333 457899999999987 4444 3 5679999998
Q ss_pred CCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC---------CeEEEEeCCCCCc
Q 048801 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD---------TFARVWSACKSSV 431 (1715)
Q Consensus 361 tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D---------G~IrVWDl~t~~~ 431 (1715)
+++......... ......+..++++++|+++++.... ....||.+....
T Consensus 82 ~g~~~~~~~~~~---------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g- 139 (297)
T 3g4e_A 82 EQSAVVLATVDN---------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH- 139 (297)
T ss_dssp TTEEEEEEECCT---------------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-
T ss_pred CCcEEEEEecCC---------------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-
Confidence 776432211100 0113447899999999977654221 223444443210
Q ss_pred cCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecC--CCccC
Q 048801 432 EDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPR--SRRSH 509 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~--t~~~~ 509 (1715)
. +..+..+....+.++|+|++ ..++++.+.++.|.+|++. ++...
T Consensus 140 -------~-~~~~~~~~~~pngi~~spdg-------------------------~~lyv~~~~~~~i~~~~~d~~~G~~~ 186 (297)
T 3g4e_A 140 -------H-VKKYFDQVDISNGLDWSLDH-------------------------KIFYYIDSLSYSVDAFDYDLQTGQIS 186 (297)
T ss_dssp -------C-EEEEEEEESBEEEEEECTTS-------------------------CEEEEEEGGGTEEEEEEECTTTCCEE
T ss_pred -------C-EEEEeeccccccceEEcCCC-------------------------CEEEEecCCCCcEEEEeccCCCCccc
Confidence 0 11122233356789999986 2355677778999999874 32210
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCC
Q 048801 510 GKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSAS 589 (1715)
Q Consensus 510 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~ 589 (1715)
. ... ...+......+..++++++|++.++...++.|.+||..+|+.+..+..+...
T Consensus 187 ----~-~~~-------------------~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~ 242 (297)
T 3g4e_A 187 ----N-RRS-------------------VYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDK 242 (297)
T ss_dssp ----E-EEE-------------------EEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSB
T ss_pred ----C-cEE-------------------EEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCC
Confidence 0 000 0011112245678999999988888878889999999999999999888788
Q ss_pred eEEEEEc-cCCCcEEEEEeCC
Q 048801 590 SYVLDVH-PFNPRIAMSAGYD 609 (1715)
Q Consensus 590 V~sLafS-P~dg~lLaSgs~D 609 (1715)
+++++|. |+...++++...+
T Consensus 243 ~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 243 TTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEEEEEESGGGCEEEEEEBCT
T ss_pred ceEEEEeCCCCCEEEEEcCCc
Confidence 9999998 7555666665543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=4.8e-09 Score=127.29 Aligned_cols=282 Identities=10% Similarity=-0.051 Sum_probs=176.2
Q ss_pred cEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEe----------CCCeeEEEECCCCCceEEEeCC-------CC
Q 048801 266 LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASAS----------NDFVIRVWRLPDGLPISVLRGH-------TG 328 (1715)
Q Consensus 266 tIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS----------~DGtIrVWDl~tg~~l~~L~gH-------~~ 328 (1715)
.|.++|..+++.+.++.....+ .++|+||+++|+++. .++.|.+||+.+++.+..+..+ ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999998766666 799999999998886 3688999999999999998643 12
Q ss_pred CeEEEEecCCCCcceEEEEecC--CCcEEE--EecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEE
Q 048801 329 AVTAIAFSPRPSAIYQLLSSSD--DGTCRI--WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCA 404 (1715)
Q Consensus 329 ~VtsLafSPdg~~~~~LaSgS~--DGtVrI--WDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsla 404 (1715)
....++|+|+++ +|+++.. +..|.+ +|+.+ +..+..+. |+.
T Consensus 125 ~P~~ia~SpDGk---~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-----------------------------~~~ 169 (368)
T 1mda_H 125 RVHIIGNCASSA---CLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-----------------------------CFH 169 (368)
T ss_dssp CTTSEEECTTSS---CEEEEECSSSCEEEEEETTTEE---EEEEECSS-----------------------------CCC
T ss_pred CcceEEEcCCCC---EEEEEccCCCCeEEEEEEchhh---ceEEECCC-----------------------------ceE
Confidence 456899999998 4555543 467888 99876 23332110 011
Q ss_pred EccCC-CeEEEecCCCeEEEEeCCC-----CCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccc
Q 048801 405 YNANG-TVFVTGSSDTFARVWSACK-----SSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 405 fSpdG-~~LatGs~DG~IrVWDl~t-----~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
+.|+| ..+++.+.||.+.+.++.+ ++...... ..+.-...+. . .+++
T Consensus 170 ~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-----~~i~vg~~P~---~-~~~~------------------ 222 (368)
T 1mda_H 170 IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT-----GAQNCSSQAA---Q-ANYP------------------ 222 (368)
T ss_dssp CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC-----TTSCBCSCCE---E-ETTT------------------
T ss_pred EccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee-----eeeeCCCCcc---c-cccC------------------
Confidence 22333 3445556677777777764 21100000 0000011122 1 2222
Q ss_pred ccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC
Q 048801 479 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~ 558 (1715)
..++..+. +.+.+.|+.+.... ....|. +. ..........+.+...+++++|++
T Consensus 223 --------~~~~~vs~-~~V~viD~~~~~~~-v~~~~~----~~------------~~~~~~~~~~p~g~~~v~~s~dg~ 276 (368)
T 1mda_H 223 --------GMLVWAVA-SSILQGDIPAAGAT-MKAAID----GN------------ESGRKADNFRSAGFQMVAKLKNTD 276 (368)
T ss_dssp --------TEEEECBS-SCCEEEECCSSCCE-EECCCC----SS------------CTHHHHTTEEECSSSCEEEETTTT
T ss_pred --------CEEEEEcC-CEEEEEECCCCcce-EEEEEE----ec------------cccccccccccCcceeeEEcCCCC
Confidence 34445555 88888888642200 000000 00 000000000122233378999999
Q ss_pred EEEEEec-C--------CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEe-CCCcEEEEECCCCceEEEEEc
Q 048801 559 FVLAAIM-D--------CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG-YDGRTIVWDIWEGTPIRIYEI 628 (1715)
Q Consensus 559 ~LaTgs~-D--------GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs-~DGtI~VWDl~tgk~l~tl~~ 628 (1715)
.++++.. . +.+.++|+.+++.+..+.... ...+|+|+|++.+++++.. .++.|.|+|+.+++.+.++..
T Consensus 277 ~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v 355 (368)
T 1mda_H 277 GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred EEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence 8887643 2 356699999999998886443 4789999996666888888 699999999999999999985
Q ss_pred ccceEEEEEEc
Q 048801 629 GRFKLVDGKFS 639 (1715)
Q Consensus 629 h~~~V~svafS 639 (1715)
+.. ...+++.
T Consensus 356 g~~-P~~i~~~ 365 (368)
T 1mda_H 356 DKG-PESLSVQ 365 (368)
T ss_dssp CSC-CCEEECC
T ss_pred CCC-CCEEEee
Confidence 543 3344444
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.9e-08 Score=117.91 Aligned_cols=256 Identities=15% Similarity=0.089 Sum_probs=162.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCC--cEEEEecCCCC
Q 048801 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG--TCRIWDARYSQ 363 (1715)
Q Consensus 286 ~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DG--tVrIWDl~tg~ 363 (1715)
.....|+|+++++++++...++.|++||+.++........... .. ++|++++. .|+++..++ .|.+|+...+.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~---~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQ---RVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSS---EEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCC---cEEEEecCCCceEEEEEcCCCc
Confidence 4678999999999888887789999999988776655554332 33 99999987 677777655 78888876554
Q ss_pred CcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee
Q 048801 364 YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV 443 (1715)
Q Consensus 364 ~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~ 443 (1715)
....+.... ......+.+++++|++..|.++..++.|+.|+..++.. ..+..
T Consensus 206 ~~~~~g~~~---------------------~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-------~~~~~ 257 (409)
T 3hrp_A 206 APTRIGQLG---------------------STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV-------TLIKQ 257 (409)
T ss_dssp CEEEEEECC---------------------TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE-------EEEEE
T ss_pred eeEEeeecc---------------------chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE-------EEEec
Confidence 322210000 00123467899999444444466788999999876431 11100
Q ss_pred --ecCCCCCe--eEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccc
Q 048801 444 --LSGHENDV--NYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAY 519 (1715)
Q Consensus 444 --l~gH~~~V--~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~ 519 (1715)
..++...- ..++|+|++ ..++++...++.|+.|+..... ....+..
T Consensus 258 ~~~~g~~~~~P~~~ia~~p~~-------------------------g~lyv~d~~~~~I~~~~~~g~~-~~~~g~~---- 307 (409)
T 3hrp_A 258 LELSGSLGTNPGPYLIYYFVD-------------------------SNFYMSDQNLSSVYKITPDGEC-EWFCGSA---- 307 (409)
T ss_dssp CCCCSCCCCSSCCEEEEETTT-------------------------TEEEEEETTTTEEEEECTTCCE-EEEEECT----
T ss_pred ccccCCCCCCccccEEEeCCC-------------------------CEEEEEeCCCCEEEEEecCCCE-EEEEeCC----
Confidence 11222222 389999853 2577777788999999876421 0000000
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCceEEEEecC------------
Q 048801 520 HLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSLVHSLTGH------------ 586 (1715)
Q Consensus 520 ~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~~l~tL~gH------------ 586 (1715)
.... ...+ ......-.....++++++|.++++-. .++.|++|++.++.. .++.++
T Consensus 308 ----~~~g----~~dg---~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~ 375 (409)
T 3hrp_A 308 ----TQKT----VQDG---LREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPL 375 (409)
T ss_dssp ----TCCS----CBCE---EGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTT
T ss_pred ----CCCC----cCCC---cccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChh
Confidence 0000 0000 00111123478899999999888777 889999999878764 444444
Q ss_pred ---CCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 587 ---SASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 587 ---~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
-.....|++++ ++.++++-..+++|+.+++
T Consensus 376 ~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 376 EATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred ceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 23578999999 5788888888888888765
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.03 E-value=6.5e-08 Score=113.19 Aligned_cols=231 Identities=12% Similarity=0.106 Sum_probs=151.4
Q ss_pred CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEE
Q 048801 326 HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAY 405 (1715)
Q Consensus 326 H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtslaf 405 (1715)
+..-.-+..|++++.. ++++...++.|..||..++... .+.. ...+.++++
T Consensus 11 ~~~~~Egp~w~~~~~~--l~~~d~~~~~i~~~d~~~~~~~-~~~~--------------------------~~~~~~i~~ 61 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNS--LLFVDIPAKKVCRWDSFTKQVQ-RVTM--------------------------DAPVSSVAL 61 (297)
T ss_dssp CCSBEEEEEEETTTTE--EEEEETTTTEEEEEETTTCCEE-EEEC--------------------------SSCEEEEEE
T ss_pred CCccccCCeEECCCCE--EEEEECCCCEEEEEECCCCcEE-EEeC--------------------------CCceEEEEE
Confidence 3445568899997653 5677778899999998876531 1111 234889999
Q ss_pred ccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecC--CCCCeeEEEEccCcccccccccccccccccccccCCc
Q 048801 406 NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG--HENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW 483 (1715)
Q Consensus 406 SpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g--H~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~ 483 (1715)
+++|+++++. ++.|.+||..+++. ..+..... ....++.+++++++
T Consensus 62 ~~dG~l~v~~--~~~l~~~d~~~g~~-------~~~~~~~~~~~~~~~~di~~d~dG----------------------- 109 (297)
T 3g4e_A 62 RQSGGYVATI--GTKFCALNWKEQSA-------VVLATVDNDKKNNRFNDGKVDPAG----------------------- 109 (297)
T ss_dssp BTTSSEEEEE--TTEEEEEETTTTEE-------EEEEECCTTCSSEEEEEEEECTTS-----------------------
T ss_pred CCCCCEEEEE--CCeEEEEECCCCcE-------EEEEecCCCCCCCCCCCEEECCCC-----------------------
Confidence 9999965553 56799999876532 11111111 12347788888876
Q ss_pred ccCceEEEEcC---------CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC
Q 048801 484 FCHDNIVTCSR---------DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS 554 (1715)
Q Consensus 484 ~~~~~LaSgS~---------DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS 554 (1715)
.++++... .....||.+.... ....+.......+.++|+
T Consensus 110 ---~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-----------------------------~~~~~~~~~~~pngi~~s 157 (297)
T 3g4e_A 110 ---RYFAGTMAEETAPAVLERHQGALYSLFPDH-----------------------------HVKKYFDQVDISNGLDWS 157 (297)
T ss_dssp ---CEEEEEEECCSBTTBCCTTCEEEEEECTTS-----------------------------CEEEEEEEESBEEEEEEC
T ss_pred ---CEEEecCCcccccccccCCCcEEEEEECCC-----------------------------CEEEEeeccccccceEEc
Confidence 34443321 1223444333210 001111122345789999
Q ss_pred CCCCEEEE-EecCCeEEEEEC--CCCceE-----EEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEE
Q 048801 555 LDNRFVLA-AIMDCRICVWNA--VDGSLV-----HSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY 626 (1715)
Q Consensus 555 PDG~~LaT-gs~DGtI~IWDl--~sg~~l-----~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl 626 (1715)
||++.|+. .+.++.|.+|++ .+|.+. ..+..+.+....+++.+ ++++.++...++.|.+||..+|+.+..+
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~~i 236 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQTV 236 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEEEE
Confidence 99987754 555789999987 456532 22333445678999999 5678777777889999999999999999
Q ss_pred EcccceEEEEEEc-CCCCEEEEEeC
Q 048801 627 EIGRFKLVDGKFS-PDGTSIVLSDD 650 (1715)
Q Consensus 627 ~~h~~~V~svafS-PDG~~LAsgs~ 650 (1715)
..+...+++++|. ||++.|.+++.
T Consensus 237 ~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 237 KLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp ECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred ECCCCCceEEEEeCCCCCEEEEEcC
Confidence 8776789999998 89988876654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-08 Score=121.94 Aligned_cols=285 Identities=9% Similarity=0.003 Sum_probs=173.4
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCcEEEEe-------cCCCCCeEEEEECCCCCEEEEE
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGS--DDRLVKIWSMETAFCLASC-------RGHEGDITDLAVSSNNTLVASA 303 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS--~DGtIrIWDl~tgk~l~tL-------~gHs~~VtsLafSpDg~lLASG 303 (1715)
++.+..+. ..+..|+++++|+++++.. .++.++||.+.+++.. .+ .+|...+.+|+|+++++++++.
T Consensus 9 ~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D 84 (343)
T 2qe8_A 9 LEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLD 84 (343)
T ss_dssp CEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEE
T ss_pred eEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEc
Confidence 34455544 7899999999999998864 2343666666556433 22 2355789999999999877665
Q ss_pred eC-----CCeeEEEECCCCCceEEEeCC------CCCeEEEEecCCCCcceEEEEec---CCCcEEEEecCCCCCcceec
Q 048801 304 SN-----DFVIRVWRLPDGLPISVLRGH------TGAVTAIAFSPRPSAIYQLLSSS---DDGTCRIWDARYSQYSPRIY 369 (1715)
Q Consensus 304 S~-----DGtIrVWDl~tg~~l~~L~gH------~~~VtsLafSPdg~~~~~LaSgS---~DGtVrIWDl~tg~~l~~i~ 369 (1715)
.. ++.|.+||+.+++.+..+... ...+..+++.+++.. .+++.. .++.|.+||+.+++....+.
T Consensus 85 ~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~--~yvtd~~~~~~~~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 85 NGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNF--VYISDPAPDDKAALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp CHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTE--EEEEECCSGGGCEEEEEETTTCCEEEECT
T ss_pred CCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCE--EEEEcCccCCCCeEEEEECCCCCEEEEec
Confidence 43 578999999999877766532 235689999986552 445544 67899999998776433221
Q ss_pred CCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC
Q 048801 370 LPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN 449 (1715)
Q Consensus 370 ~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~ 449 (1715)
. .... .... ..+.++|..|.+++.+|.+..|..
T Consensus 163 ~--~~~~-------------------~~~~---~~~~~~g~~~~~~~~~g~~~~~~~----------------------- 195 (343)
T 2qe8_A 163 G--YPGI-------------------APED---IDLVIDGVPVQIGQPDGTVIRPHL----------------------- 195 (343)
T ss_dssp T--CTTT-------------------SCCS---CCCEETTEECBEECTTSCEECCCC-----------------------
T ss_pred C--CCcc-------------------cccc---cceeECCEEEEeccCCCceeceec-----------------------
Confidence 0 0000 0000 223346666666666666654421
Q ss_pred CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC-eEEEEecCCCccCcccccccccccccCCCCCC
Q 048801 450 DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG-SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPL 528 (1715)
Q Consensus 450 ~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG-sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~ 528 (1715)
.++.|+|+|++ ..|+.+..++ .|..++...... ..... ....
T Consensus 196 ~~~gia~s~dg--------------------------~~ly~~~~~~~~l~~~~~~~~~~-~~~~~--~~~~-------- 238 (343)
T 2qe8_A 196 GVNGIVLDAEN--------------------------EWLYLSPMHSTSMYRIKSADLSN-LQLTD--AELG-------- 238 (343)
T ss_dssp CEEEEEECTTS--------------------------CEEEEEESSCSEEEEEEHHHHTC-TTCCH--HHHH--------
T ss_pred ccceeEeccCC--------------------------CEEEEEeCCCCeEEEEEHHHhcC-CCCCh--hhhh--------
Confidence 35678999876 4566655554 444443221000 00000 0000
Q ss_pred CCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec-CCCCeEEEEEccCCCcEEEEEe
Q 048801 529 PPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG-HSASSYVLDVHPFNPRIAMSAG 607 (1715)
Q Consensus 529 ~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g-H~~~V~sLafSP~dg~lLaSgs 607 (1715)
......++......++++++|.++++...++.|.+||..+|+....... +...+.+++|.+ ++.++++.+
T Consensus 239 --------~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~-~g~l~v~~~ 309 (343)
T 2qe8_A 239 --------SKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGS-DGYLYFDCN 309 (343)
T ss_dssp --------TTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECT-TSCEEEEEC
T ss_pred --------cceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECC-CCcEEEEeC
Confidence 0000111223456789999999999988899999999866765443332 245688999998 567777776
Q ss_pred CCCcEEEEE
Q 048801 608 YDGRTIVWD 616 (1715)
Q Consensus 608 ~DGtI~VWD 616 (1715)
..+.+.+|.
T Consensus 310 ~~~~~~~f~ 318 (343)
T 2qe8_A 310 QLHHSAPLN 318 (343)
T ss_dssp CGGGSGGGB
T ss_pred ccccccccc
Confidence 555554443
|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-10 Score=125.37 Aligned_cols=104 Identities=16% Similarity=0.206 Sum_probs=90.2
Q ss_pred CCChHHHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhh--hhhhhHHHHHHHHHHHH
Q 048801 1607 EIDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVN--NYYRSLEAAKDDINVML 1684 (1715)
Q Consensus 1607 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n--~~Yr~~~~~~~d~~~~~ 1684 (1715)
.+.+..+.++...|..|... +....|..++.. ..++|...+..||||+||++||++ ..|++++++..||++|+
T Consensus 77 ~l~~~~~~~c~~il~~l~~~----~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~ 151 (184)
T 3o36_A 77 KLTPIDKRKCERLLLFLYCH----EMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIF 151 (184)
T ss_dssp CCCHHHHHHHHHHHHHHHHS----TTCHHHHSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhc----hhhhhhcccccc-CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 46777888888888887653 455566666653 479999999999999999999998 57999999999999999
Q ss_pred hhhhhccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1685 SNAESYFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1685 ~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
+||.+||.++++|..+|+.|.+.|.+.+.+|
T Consensus 152 ~Na~~yN~~~s~v~~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 152 QNCAEFNEPDSEVANAGIKLENYFEELLKNL 182 (184)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988753
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.7e-09 Score=125.28 Aligned_cols=301 Identities=14% Similarity=0.119 Sum_probs=186.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCC
Q 048801 248 CAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHT 327 (1715)
Q Consensus 248 ~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~ 327 (1715)
++.++.+| .|..++.++.|..|| .+++.+..+..+...+.++.+.++|.++ .++.+ |..+|. +++.+..+....
T Consensus 24 ~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~--l~~~d~-~g~~~~~~~~~~ 97 (330)
T 3hxj_A 24 SPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIY-FGSDK--VYAINP-DGTEKWRFDTKK 97 (330)
T ss_dssp CCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEEC-CSSCE--EEEECC-CGGGGGGSCC--
T ss_pred CceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEE-EecCc--EEEECC-CCcEEEEEECCC
Confidence 34455666 456677788999999 8888876665555566788887777544 44444 888885 666544433222
Q ss_pred CCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc
Q 048801 328 GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA 407 (1715)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp 407 (1715)
.......+. ++ .|..++.++.|..+|.. ++........ ...+.++...+
T Consensus 98 ~~~~~~~~~-~~----~l~v~t~~~~l~~~d~~-g~~~~~~~~~-------------------------~~~~~~~~~~~ 146 (330)
T 3hxj_A 98 AIVSDFTIF-ED----ILYVTSMDGHLYAINTD-GTEKWRFKTK-------------------------KAIYATPIVSE 146 (330)
T ss_dssp ---CCEEEE-TT----EEEEECTTSEEEEECTT-SCEEEEEECS-------------------------SCCCSCCEECT
T ss_pred CcccCceEE-CC----EEEEEecCCEEEEEcCC-CCEEEEEcCC-------------------------CceeeeeEEcC
Confidence 222333333 33 67888888999999987 6544333211 11244556666
Q ss_pred CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCc
Q 048801 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHD 487 (1715)
Q Consensus 408 dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~ 487 (1715)
+|. |.+|+.++.|..||.. ++. +..+......+.++.+.++ .
T Consensus 147 ~g~-l~vgt~~~~l~~~d~~-g~~---------~~~~~~~~~~~~~~~~d~~---------------------------g 188 (330)
T 3hxj_A 147 DGT-IYVGSNDNYLYAINPD-GTE---------KWRFKTNDAITSAASIGKD---------------------------G 188 (330)
T ss_dssp TSC-EEEECTTSEEEEECTT-SCE---------EEEEECSSCCCSCCEECTT---------------------------C
T ss_pred CCE-EEEEcCCCEEEEECCC-CCE---------eEEEecCCCceeeeEEcCC---------------------------C
Confidence 776 5556778999999986 421 2222223334445555443 2
Q ss_pred eEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC
Q 048801 488 NIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC 567 (1715)
Q Consensus 488 ~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG 567 (1715)
.|..++ +.|..+| .++... |. .......+.++++.++|.+ .+++.++
T Consensus 189 ~l~v~t--~~l~~~d-~~g~~~-----~~------------------------~~~~~~~~~~~~~~~~g~l-~v~t~~~ 235 (330)
T 3hxj_A 189 TIYFGS--DKVYAIN-PDGTEK-----WN------------------------FYAGYWTVTRPAISEDGTI-YVTSLDG 235 (330)
T ss_dssp CEEEES--SSEEEEC-TTSCEE-----EE------------------------ECCSSCCCSCCEECTTSCE-EEEETTT
T ss_pred EEEEEe--CEEEEEC-CCCcEE-----EE------------------------EccCCcceeceEECCCCeE-EEEcCCC
Confidence 455555 7888888 443211 11 1111234677788888754 4566778
Q ss_pred eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEE
Q 048801 568 RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVL 647 (1715)
Q Consensus 568 tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAs 647 (1715)
.|..++ .++..+..+......+.++.+.+ ++. |..++.+|.|..+|. +++.+..+......+.++...++|. |.+
T Consensus 236 gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~-~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~ 310 (330)
T 3hxj_A 236 HLYAIN-PDGTEKWRFKTGKRIESSPVIGN-TDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYF 310 (330)
T ss_dssp EEEEEC-TTSCEEEEEECSSCCCSCCEECT-TSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEE
T ss_pred eEEEEC-CCCCEeEEeeCCCCccccceEcC-CCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEE
Confidence 888887 46777777765544445566654 444 445778888999996 7888887775555566777878887 556
Q ss_pred EeCCCeEEEEECCC
Q 048801 648 SDDVGQIYLLNTGQ 661 (1715)
Q Consensus 648 gs~DG~I~IWdl~t 661 (1715)
++.+|.+++.....
T Consensus 311 gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 311 GTRNGKFYALFNLE 324 (330)
T ss_dssp ECTTSCEEEEEC--
T ss_pred EcCCCeEEEEeccc
Confidence 88889999887643
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.99 E-value=5.2e-09 Score=127.55 Aligned_cols=168 Identities=7% Similarity=-0.035 Sum_probs=129.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---------EEE-EecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEEC
Q 048801 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAF---------CLA-SCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL 314 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk---------~l~-tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl 314 (1715)
.++.+++++...+|++|+.++ ++||++.+.. ... ....+.+ |+.|+| |+.+|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 689999999999999999985 5569875443 111 1223566 999999 99999999 8899999999
Q ss_pred CCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 315 PDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 315 ~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
.+......+..|...|.++.+.+. .+++++.||.|.+||+.++....
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p-----~~av~~~dG~L~v~dl~~~~~~~---------------------------- 160 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN-----TLVILNSVNDLSALDLRTKSTKQ---------------------------- 160 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS-----EEEEEETTSEEEEEETTTCCEEE----------------------------
T ss_pred hhhhccCccceeecceeeEEecCC-----CEEEEECCCCEEEEEccCCcccc----------------------------
Confidence 888777777788888998887764 37888999999999998765421
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee------c---CCCCCeeEEEEccCc
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL------S---GHENDVNYVQFSGCA 460 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l------~---gH~~~V~sLafspdg 460 (1715)
....|+|++|+|+| ++.|..||.+++|+.....+ .....+ . +|...|.+|.|.+++
T Consensus 161 -~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~-------~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~ 225 (388)
T 1xip_A 161 -LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEM-------EKQFEFSLPSELEELPVEEYSPLSVTILSPQ 225 (388)
T ss_dssp -EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEE-------EEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred -ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccc-------cccceecCCcccccccCCCeeEEEEEEecCC
Confidence 13459999999999 67888999999998865421 001122 2 477899999999875
|
| >3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A | Back alignment and structure |
|---|
Probab=98.99 E-value=4e-10 Score=116.41 Aligned_cols=100 Identities=14% Similarity=0.190 Sum_probs=83.2
Q ss_pred HHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCC
Q 048801 1614 DKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIK 1693 (1715)
Q Consensus 1614 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~ 1693 (1715)
+.|...+..+.......+....|..+++....++|...+..|||++||++||+++.|++++++..||++|++||.+||.+
T Consensus 9 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 88 (130)
T 3dai_A 9 RELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPD 88 (130)
T ss_dssp HHHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 33444444444444455667788888887788999999999999999999999999999999999999999999999999
Q ss_pred ChH----HHHHHHHHHHHHHHHhh
Q 048801 1694 NAA----LSAKVERLRDWFNRTLN 1713 (1715)
Q Consensus 1694 ~~~----i~~~~~~l~~~~~~~i~ 1713 (1715)
++. |..+|..|.+.+...|.
T Consensus 89 ~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 89 RDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Confidence 874 47888999998888774
|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=5.9e-10 Score=122.39 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=82.9
Q ss_pred CCChHHHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCC--CCCCHHHHHHHhhhh---hhhhHHHHHHHHH
Q 048801 1607 EIDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFP--VPLYPEVIRLRLVNN---YYRSLEAAKDDIN 1681 (1715)
Q Consensus 1607 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~i~~Rl~n~---~Yr~~~~~~~d~~ 1681 (1715)
.+.+..+.++...|.+|.. ++....|.++++ ++|...+. .||||+|||+||+++ +|+++++++.||+
T Consensus 72 ~m~~~~~~~c~~iL~~l~~----~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~ 143 (189)
T 2ro1_A 72 KLSPANQRKCERVLLALFC----HEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVG 143 (189)
T ss_dssp SSCHHHHHHHHHHHHHHHH----STTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhccc----CccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHH
Confidence 5677777777777777654 245556666654 66777776 699999999999999 9999999999999
Q ss_pred HHHhhhhhccCCChHHHHHHHHHHHHHHHHhhc
Q 048801 1682 VMLSNAESYFIKNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1682 ~~~~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
+|++||++|| +++.++.+|+.|.+.|.+.+.+
T Consensus 144 Lif~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~ 175 (189)
T 2ro1_A 144 RMFKQFNKLT-EDKADVQSIIGLQRFFETRMNE 175 (189)
T ss_dssp HHHHHHHHHC-CSSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 6888999999999999998865
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-07 Score=111.90 Aligned_cols=234 Identities=9% Similarity=0.022 Sum_probs=148.9
Q ss_pred eEEEEcCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 235 NIKKLRGHRDAVYCAIFDRSGR-FVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG~-~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
.+..|..+.......+|+++|+ +++++..++.|..|+. ++. +..+..+...+..++++++|+++++...++.|.+|+
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSD 113 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEEC
Confidence 3445556667788999999998 5667777899999998 454 345555677899999999999777766668899999
Q ss_pred CCCCCceEEEeCC-----CCCeEEEEecCCCCcceEEEE----ecC-------------CCcEEEEecCCCCCcceecCC
Q 048801 314 LPDGLPISVLRGH-----TGAVTAIAFSPRPSAIYQLLS----SSD-------------DGTCRIWDARYSQYSPRIYLP 371 (1715)
Q Consensus 314 l~tg~~l~~L~gH-----~~~VtsLafSPdg~~~~~LaS----gS~-------------DGtVrIWDl~tg~~l~~i~~~ 371 (1715)
.. +.. ..+..+ ...+.++++.+++. ++++ |.. .+.|..||..+++.....
T Consensus 114 ~~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~---l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--- 185 (305)
T 3dr2_A 114 AD-GQA-HLLVGRYAGKRLNSPNDLIVARDGA---IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--- 185 (305)
T ss_dssp TT-SCE-EEEECEETTEECSCCCCEEECTTSC---EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---
T ss_pred CC-CCE-EEEEeccCCCccCCCCCEEECCCCC---EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---
Confidence 75 553 333221 13467899999986 5554 332 245677776555432211
Q ss_pred CCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC------CeEEEEeCCCCCccCCCCCceeeeee-
Q 048801 372 KPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD------TFARVWSACKSSVEDSEQPIHELDVL- 444 (1715)
Q Consensus 372 ~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D------G~IrVWDl~t~~~~~~~~~~~~l~~l- 444 (1715)
.......++|+|+|+.|+++... +.|.+|++....+ .....+
T Consensus 186 ------------------------~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-------~~~~~~~ 234 (305)
T 3dr2_A 186 ------------------------DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL-------HDRRHFA 234 (305)
T ss_dssp ------------------------EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE-------EEEEEEE
T ss_pred ------------------------cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc-------cCCeEEE
Confidence 01235689999999977776554 6899999864310 001111
Q ss_pred cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCC
Q 048801 445 SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVP 524 (1715)
Q Consensus 445 ~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~ 524 (1715)
.........+++.+++ + |.++..+ .|.+|+... +.
T Consensus 235 ~~~~~~pdgi~~d~~G--------------------------~-lwv~~~~-gv~~~~~~g-~~---------------- 269 (305)
T 3dr2_A 235 SVPDGLPDGFCVDRGG--------------------------W-LWSSSGT-GVCVFDSDG-QL---------------- 269 (305)
T ss_dssp CCSSSCCCSEEECTTS--------------------------C-EEECCSS-EEEEECTTS-CE----------------
T ss_pred ECCCCCCCeEEECCCC--------------------------C-EEEecCC-cEEEECCCC-CE----------------
Confidence 1122334456666654 3 4444444 488888742 21
Q ss_pred CCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCe
Q 048801 525 PPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCR 568 (1715)
Q Consensus 525 ~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGt 568 (1715)
...+.. ...+..++|+++++.|++++.++.
T Consensus 270 -------------~~~~~~-~~~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 270 -------------LGHIPT-PGTASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp -------------EEEEEC-SSCCCEEEECTTSCEEEEEETTEE
T ss_pred -------------EEEEEC-CCceeEEEEeCCCCEEEEEcCCeE
Confidence 111111 124788999999998888887643
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.8e-08 Score=130.56 Aligned_cols=246 Identities=11% Similarity=0.008 Sum_probs=159.3
Q ss_pred CCCCeEEEEecCCCCcceEEE-----EecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 326 HTGAVTAIAFSPRPSAIYQLL-----SSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 326 H~~~VtsLafSPdg~~~~~La-----SgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
|...+..++|||+++ +|+ .|+....|++||+.+++.+... . .....
T Consensus 127 ~~~~l~~~~~SpDg~---~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~-------------------------~~~k~ 177 (693)
T 3iuj_A 127 GTTALDQLSFSRDGR---ILAYSLSLAGSDWREIHLMDVESKQPLETP-L-------------------------KDVKF 177 (693)
T ss_dssp SCCEEEEEEECTTSS---EEEEEEECSSCCEEEEEEEETTTCSEEEEE-E-------------------------EEEES
T ss_pred CcEEEEEEEECCCCC---EEEEEEecCCCceEEEEEEECCCCCCCccc-c-------------------------CCcee
Confidence 445688899999998 444 2333468999999988753321 0 01113
Q ss_pred eEEEEccCCCeEEEecCCC-------------eEEEEeCCCCCccCCCCCceeeeeecC-CCCCeeEEEEccCccccccc
Q 048801 401 LCCAYNANGTVFVTGSSDT-------------FARVWSACKSSVEDSEQPIHELDVLSG-HENDVNYVQFSGCAVASRSA 466 (1715)
Q Consensus 401 tslafSpdG~~LatGs~DG-------------~IrVWDl~t~~~~~~~~~~~~l~~l~g-H~~~V~sLafspdg~as~~~ 466 (1715)
..++|+ ||+.|+.++.+. .|++|++.+... ....+..... |...+..+.|+|++
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-----~~~~v~~~~~~~~~~~~~~~~SpDg------ 245 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQE-----DDRLVFGAIPAQHHRYVGATVTEDD------ 245 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGG-----GCEEEESCSGGGCCSEEEEEECTTS------
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcc-----cceEEEecCCCCCeEEEEEEEcCCC------
Confidence 567899 999888887764 399999876421 0122333333 44557789999987
Q ss_pred ccccccccccccccCCcccCceE-EEEcC---CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccccc
Q 048801 467 MSDAFKEENVPKFKNSWFCHDNI-VTCSR---DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLL 542 (1715)
Q Consensus 467 ~~~~~~~~~~~~~~~s~~~~~~L-aSgS~---DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~ 542 (1715)
+.| ++.+. ...|.++|+.++. .....+.
T Consensus 246 --------------------~~l~~~~~~~~~~~~i~~~d~~~~~----------------------------~~~~~l~ 277 (693)
T 3iuj_A 246 --------------------RFLLISAANSTSGNRLYVKDLSQEN----------------------------APLLTVQ 277 (693)
T ss_dssp --------------------CEEEEEEESSSSCCEEEEEETTSTT----------------------------CCCEEEE
T ss_pred --------------------CEEEEEEccCCCCcEEEEEECCCCC----------------------------CceEEEe
Confidence 344 44332 3578888887532 0112233
Q ss_pred CCCCCeeEEEeCCCCCEEEEEec----CCeEEEEECCCCce--EEEEecCCCCeEEEEEccCCCcEEEEEeCCC--cEEE
Q 048801 543 PTPRGVNMIVWSLDNRFVLAAIM----DCRICVWNAVDGSL--VHSLTGHSASSYVLDVHPFNPRIAMSAGYDG--RTIV 614 (1715)
Q Consensus 543 ~h~~~VtslafSPDG~~LaTgs~----DGtI~IWDl~sg~~--l~tL~gH~~~V~sLafSP~dg~lLaSgs~DG--tI~V 614 (1715)
.+....... |+++|..|+..+. .+.|.++++.++.. ...+..|...+. .|++++..++++...+| .|++
T Consensus 278 ~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 278 GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQ 354 (693)
T ss_dssp CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence 333344444 6677766655443 36899999988764 456777777665 88886666766666666 6889
Q ss_pred EECCCCceEEEEEc-ccceEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCcc
Q 048801 615 WDIWEGTPIRIYEI-GRFKLVDGKFSPDGTSIVLSDDV----GQIYLLNTGQGES 664 (1715)
Q Consensus 615 WDl~tgk~l~tl~~-h~~~V~svafSPDG~~LAsgs~D----G~I~IWdl~tGe~ 664 (1715)
|++..+ ....+.. +.+.+..+.+++++..|+....+ +.|+.||+.+++.
T Consensus 355 ~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 355 FDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp ECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 998744 4454442 34567788889999888866554 8999999988754
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.1e-08 Score=130.23 Aligned_cols=250 Identities=12% Similarity=0.099 Sum_probs=155.5
Q ss_pred CCCCCeEEEEECCCCCEEEEEe-----CCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCC-----
Q 048801 283 GHEGDITDLAVSSNNTLVASAS-----NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG----- 352 (1715)
Q Consensus 283 gHs~~VtsLafSpDg~lLASGS-----~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DG----- 352 (1715)
+|...|..++|||||++||.+. ....|+|||+.+|+.+.... +......++|+ |++ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~---~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNE---GFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTT---EEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCC---EEEEEEecCccccc
Confidence 3556788999999999988543 23579999999998654311 11113578899 987 566666553
Q ss_pred --------cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCC-CCcceeEEEEccCCCeEEEec----CCC
Q 048801 353 --------TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL-QSHQILCCAYNANGTVFVTGS----SDT 419 (1715)
Q Consensus 353 --------tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~-h~~~VtslafSpdG~~LatGs----~DG 419 (1715)
.|++|++.++......... ... +...+..+.|+|||++|+... ...
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~---------------------~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 259 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFG---------------------AIPAQHHRYVGATVTEDDRFLLISAANSTSGN 259 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEES---------------------CSGGGCCSEEEEEECTTSCEEEEEEESSSSCC
T ss_pred ccccCCCcEEEEEECCCCcccceEEEe---------------------cCCCCCeEEEEEEEcCCCCEEEEEEccCCCCc
Confidence 3889998776532221110 011 123367899999999886543 235
Q ss_pred eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC---C
Q 048801 420 FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD---G 496 (1715)
Q Consensus 420 ~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D---G 496 (1715)
.|+++++.++. .....+..+....... +++++ ..++++...+ +
T Consensus 260 ~i~~~d~~~~~--------~~~~~l~~~~~~~~~~-~~~~g-------------------------~~l~~~t~~~~~~~ 305 (693)
T 3iuj_A 260 RLYVKDLSQEN--------APLLTVQGDLDADVSL-VDNKG-------------------------STLYLLTNRDAPNR 305 (693)
T ss_dssp EEEEEETTSTT--------CCCEEEECSSSSCEEE-EEEET-------------------------TEEEEEECTTCTTC
T ss_pred EEEEEECCCCC--------CceEEEeCCCCceEEE-EeccC-------------------------CEEEEEECCCCCCC
Confidence 89999987642 1233444555555444 44443 2344555443 6
Q ss_pred eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC---eEEEEE
Q 048801 497 SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWN 573 (1715)
Q Consensus 497 sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG---tI~IWD 573 (1715)
.|.++++.++.. ..| ..+..+...+. .|++++++|+....++ .|++|+
T Consensus 306 ~l~~~d~~~~~~----~~~-----------------------~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 306 RLVTVDAANPGP----AHW-----------------------RDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFD 356 (693)
T ss_dssp EEEEEETTSCCG----GGC-----------------------EEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred EEEEEeCCCCCc----ccc-----------------------EEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence 788888875321 011 12333444443 8899999887766544 689999
Q ss_pred CCCCceEEEEe-cCCCCeEEEEEccCCCcEEEEEeC---CCcEEEEECCCCce
Q 048801 574 AVDGSLVHSLT-GHSASSYVLDVHPFNPRIAMSAGY---DGRTIVWDIWEGTP 622 (1715)
Q Consensus 574 l~sg~~l~tL~-gH~~~V~sLafSP~dg~lLaSgs~---DGtI~VWDl~tgk~ 622 (1715)
+..+ ....+. .+.+.+..+.+++++..++++.+. -++|+.||+.+++.
T Consensus 357 ~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 357 YEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp TTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 8744 445554 345567778888866666666543 27899999988764
|
| >3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A | Back alignment and structure |
|---|
Probab=98.93 E-value=6.2e-10 Score=128.88 Aligned_cols=87 Identities=16% Similarity=0.266 Sum_probs=80.3
Q ss_pred cccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHH
Q 048801 1628 SRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDW 1707 (1715)
Q Consensus 1628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~ 1707 (1715)
...+....|..+++....++|...+..||||+||++||++++|++++++..||++|++||.+||.+++.|..+|+.|.+.
T Consensus 27 ~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~ 106 (265)
T 3uv5_A 27 RDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDL 106 (265)
T ss_dssp HTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHHH
Confidence 33466777888888778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 048801 1708 FNRTLNK 1714 (1715)
Q Consensus 1708 ~~~~i~~ 1714 (1715)
|.+.+.+
T Consensus 107 ~~~~~~~ 113 (265)
T 3uv5_A 107 CDEKLKE 113 (265)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988765
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=2.9e-08 Score=120.41 Aligned_cols=267 Identities=11% Similarity=-0.037 Sum_probs=169.6
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec----------CCCcEEEEecCCCCCcceecCCCCCCCc
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS----------DDGTCRIWDARYSQYSPRIYLPKPPDAI 377 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS----------~DGtVrIWDl~tg~~l~~i~~~~~~~~i 377 (1715)
+|.|.|..+++.+.++.....+ .++|+|+++. ++++. .++.|.+||+.+++.+.++.++......
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~---lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSD---FALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSC---EEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCE---EEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc
Confidence 7889999999999998755555 7999999984 44443 4789999999999988877654211100
Q ss_pred cCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC--CCeEEE--EeCCCCCccCCCCCceeeeeecCCCCCeeE
Q 048801 378 TGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS--DTFARV--WSACKSSVEDSEQPIHELDVLSGHENDVNY 453 (1715)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~--DG~IrV--WDl~t~~~~~~~~~~~~l~~l~gH~~~V~s 453 (1715)
.......++|+|||++|+++.. +..|.+ +|+.+ +..+... +.
T Consensus 122 ------------------~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t------------v~~i~v~-~~--- 167 (368)
T 1mda_H 122 ------------------VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD------------DQLTKSA-SC--- 167 (368)
T ss_dssp ------------------BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE------------EEEEECS-SC---
T ss_pred ------------------cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh------------ceEEECC-Cc---
Confidence 0112457899999999988864 467888 88753 1111110 00
Q ss_pred EEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC-----CccCcccccccccccccCCCCCC
Q 048801 454 VQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS-----RRSHGKVGRWTRAYHLKVPPPPL 528 (1715)
Q Consensus 454 Lafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t-----~~~~~~~~~~~~~~~l~~~~~~~ 528 (1715)
+.+.|++ ...+++.+.||.+.+.++.+ ++.....
T Consensus 168 ~~~~p~g-------------------------~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~---------------- 206 (368)
T 1mda_H 168 FHIHPGA-------------------------AATHYLGSCPASLAASDLAAAPAAAGIVGAQC---------------- 206 (368)
T ss_dssp CCCEEEE-------------------------TTEEECCCCTTSCEEEECCSSCCCCEECCCCS----------------
T ss_pred eEEccCC-------------------------CeEEEEEcCCCCEEEEECccccccCCeEEEEe----------------
Confidence 1122332 24566777888888888775 2211000
Q ss_pred CCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc--eEEEEec-------C---CCCeEEEEEc
Q 048801 529 PPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS--LVHSLTG-------H---SASSYVLDVH 596 (1715)
Q Consensus 529 ~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~--~l~tL~g-------H---~~~V~sLafS 596 (1715)
. . .+.....+. + ++++..++..+. +.|.+.|+.+.. .+..+.- + ......++|+
T Consensus 207 -----t--~--~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 207 -----T--G--AQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp -----C--T--TSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred -----e--e--eeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc
Confidence 0 0 000011222 3 555666555556 899999986542 2222211 0 0111226899
Q ss_pred cCCCcEEEEEe---C-----CCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCE-EEEEe-CCCeEEEEECCCCcccc
Q 048801 597 PFNPRIAMSAG---Y-----DGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTS-IVLSD-DVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 597 P~dg~lLaSgs---~-----DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~-LAsgs-~DG~I~IWdl~tGe~~k 666 (1715)
|++.+++++.. . ++.+.++|+.+++.+..+..+. ....++|+|||++ +++.. .++.|.++|+.+++.++
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 96666666544 2 2356699999999999887554 6789999999985 55556 58999999999998775
Q ss_pred ccc
Q 048801 667 DAK 669 (1715)
Q Consensus 667 ~~~ 669 (1715)
..+
T Consensus 352 ~I~ 354 (368)
T 1mda_H 352 SVE 354 (368)
T ss_dssp ECC
T ss_pred EEE
Confidence 443
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.1e-06 Score=111.68 Aligned_cols=333 Identities=8% Similarity=0.058 Sum_probs=205.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEe-cCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASC-RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL-~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~ 324 (1715)
|.++..+++|.+.+ |+.++-|..|+..+++..... ..+...|.++...+++.+.+ |+.++-|.+|+..++.......
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeec
Confidence 88998888886554 666556889998877654321 12356799999888886555 4444448889987765433222
Q ss_pred C-------CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCC
Q 048801 325 G-------HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQS 397 (1715)
Q Consensus 325 g-------H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~ 397 (1715)
. ....|.++...+++. |..|+.+ -|.+||..++........+ ........
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g~----lWigt~~-Gl~~~~~~~~~~~~~~~~~------------------~~~~~l~~ 309 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQNR----LWIGTFN-DLNIYHEGTDSFASYSSNP------------------VENGSLSQ 309 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTSC----EEEEESS-CEEEEETTTTEEEEECCCT------------------TSTTSCSS
T ss_pred CCCCccccCCCeEEEEEEcCCCC----EEEEeCC-hhheEcCCCCeEEEEecCC------------------CCCCCCCC
Confidence 1 135699999988875 5555555 4888998766532211000 00112234
Q ss_pred cceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee----cCCCCCeeEEEEccCcccccccccccccc
Q 048801 398 HQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL----SGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 398 ~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l----~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
..|.++...++|.+ .+|+.++-|.+|+..+... ...... .-....|.++....++
T Consensus 310 ~~i~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~-------~~~~~~~~~~~l~~~~V~~i~~d~~g------------- 368 (795)
T 4a2l_A 310 RSVRSIFMDSQGGM-WLGTYFGGLNYYHPIRNRF-------KNIRNIPYKNSLSDNVVSCIVEDKDK------------- 368 (795)
T ss_dssp SCEEEEEECTTSCE-EEEESSSCEEEECGGGGSS-------EEECCCTTSSSCSCSSEEEEEECTTS-------------
T ss_pred CcEEEEEEeCCcCE-EEEECCCCeEEeCCCcccc-------eEEcCCCCCCCCCCCeeEEEEECCCC-------------
Confidence 56999999999874 4566677788888754321 111000 1123468888777654
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW 553 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf 553 (1715)
.|..|+.++-|..|+..++.... +. ... ... ...-....|.+++.
T Consensus 369 --------------~lWiGt~~~Gl~~~~~~~~~~~~--------~~--~~~---------~~~--~~~l~~~~v~~i~~ 413 (795)
T 4a2l_A 369 --------------NLWIGTNDGGLNLYNPITQRFTS--------YT--LQE---------DES--ARGIGSNNIKAVYV 413 (795)
T ss_dssp --------------CEEEEESSSCEEEECTTTCCEEE--------EC--CC-----------------CCSCSCEEEEEE
T ss_pred --------------CEEEEECCCCeEEEcCCCCcEEE--------Ee--cCC---------CCc--ccCCCCccEEEEEE
Confidence 67778888889999877533110 00 000 000 00011346899999
Q ss_pred CCCCCEEEEEecCCeEEEEECCCCceEEEEe----cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEc-
Q 048801 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLT----GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEI- 628 (1715)
Q Consensus 554 SPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~----gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~- 628 (1715)
.++|..|.+|+.++-|.+||..+++...... .+...|.++...+ ++.+.+. +.+ -|.+||..+++.......
T Consensus 414 d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwig-t~~-Gl~~~~~~~~~~~~~~~~~ 490 (795)
T 4a2l_A 414 DEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWLG-TLS-ALVRFNPEQRSFTTIEKEK 490 (795)
T ss_dssp ETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEEE-ESS-CEEEEETTTTEEEECCBCT
T ss_pred cCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEEE-ecC-ceeEEeCCCCeEEEccccc
Confidence 9999866778887889999998876543321 2345789998877 5555543 444 588999877754332211
Q ss_pred -----ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Q 048801 629 -----GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGES 664 (1715)
Q Consensus 629 -----h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~ 664 (1715)
....|.++...++|.+.+.+. +.|.+|+..+++.
T Consensus 491 ~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 491 DGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI 529 (795)
T ss_dssp TCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE
T ss_pred cccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE
Confidence 134688999999998766554 5688898876653
|
| >2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-09 Score=111.50 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=68.9
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChH----HHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAA----LSAKVERLRD 1706 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~----i~~~~~~l~~ 1706 (1715)
+....|..+ .++|...+..||||+||++||+++.|.+++++..||++|++||.+||.++++ |..+|..|.+
T Consensus 28 ~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~~~~~i~~~A~~L~~ 102 (131)
T 2dkw_A 28 KRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGDKIIRHRACTLKD 102 (131)
T ss_dssp GGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHH
T ss_pred ccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHH
Confidence 334445555 7899999999999999999999999999999999999999999999999984 6789999999
Q ss_pred HHHHHhh
Q 048801 1707 WFNRTLN 1713 (1715)
Q Consensus 1707 ~~~~~i~ 1713 (1715)
.+...|.
T Consensus 103 ~~~~~l~ 109 (131)
T 2dkw_A 103 TAHAIIA 109 (131)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888773
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=3.9e-07 Score=108.31 Aligned_cols=233 Identities=12% Similarity=0.033 Sum_probs=148.7
Q ss_pred eEEEEECCCC-CEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcc
Q 048801 288 ITDLAVSSNN-TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSP 366 (1715)
Q Consensus 288 VtsLafSpDg-~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~ 366 (1715)
..+++|++++ .++++...++.|.+||..++.. ..+. ....+.+++|++++. ++++ +.++ |.+||..+++...
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~v~~i~~~~dg~---l~v~-~~~g-l~~~d~~~g~~~~ 123 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRK-TVHA-LPFMGSALAKISDSK---QLIA-SDDG-LFLRDTATGVLTL 123 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEE-CSSCEEEEEEEETTE---EEEE-ETTE-EEEEETTTCCEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEE-CCCcceEEEEeCCCe---EEEE-ECCC-EEEEECCCCcEEE
Confidence 4567899974 5566666788999999987754 3333 356799999999985 4443 4444 9999988776432
Q ss_pred eecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC------CCeEEEEeCCCCCccCCCCCcee
Q 048801 367 RIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS------DTFARVWSACKSSVEDSEQPIHE 440 (1715)
Q Consensus 367 ~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~------DG~IrVWDl~t~~~~~~~~~~~~ 440 (1715)
..... .......+.+++++++|+++++... .+.|..++ +++.
T Consensus 124 ~~~~~---------------------~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~--------- 171 (326)
T 2ghs_A 124 HAELE---------------------SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV--------- 171 (326)
T ss_dssp EECSS---------------------TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE---------
T ss_pred EeeCC---------------------CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE---------
Confidence 11100 0011245889999999997765532 24555555 3221
Q ss_pred eeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecC--CC-ccCcccccccc
Q 048801 441 LDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPR--SR-RSHGKVGRWTR 517 (1715)
Q Consensus 441 l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~--t~-~~~~~~~~~~~ 517 (1715)
..+..+....+.++|++++ ...+++.+.++.|.+|++. ++ ..... .
T Consensus 172 -~~~~~~~~~~~~i~~s~dg-------------------------~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~-----~ 220 (326)
T 2ghs_A 172 -TKLFADISIPNSICFSPDG-------------------------TTGYFVDTKVNRLMRVPLDARTGLPTGKA-----E 220 (326)
T ss_dssp -EEEEEEESSEEEEEECTTS-------------------------CEEEEEETTTCEEEEEEBCTTTCCBSSCC-----E
T ss_pred -EEeeCCCcccCCeEEcCCC-------------------------CEEEEEECCCCEEEEEEcccccCCcccCc-----e
Confidence 1122222356789999886 1244556678899999985 33 21000 0
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEc-
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVH- 596 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafS- 596 (1715)
. ...+......+..++++++|.+.++...++.|.+|+. +++.+..+..+...+++++|+
T Consensus 221 ~-------------------~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g 280 (326)
T 2ghs_A 221 V-------------------FIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIG 280 (326)
T ss_dssp E-------------------EEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEES
T ss_pred E-------------------EEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEec
Confidence 0 0001112234678999999988877767789999998 688888888777789999998
Q ss_pred cCCCcEEEEEeCCC
Q 048801 597 PFNPRIAMSAGYDG 610 (1715)
Q Consensus 597 P~dg~lLaSgs~DG 610 (1715)
++++.++++...++
T Consensus 281 ~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 281 PDASRLLVTSAREH 294 (326)
T ss_dssp TTSCEEEEEEBCTT
T ss_pred CCCCEEEEEecCCC
Confidence 75455656555443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=5.5e-07 Score=107.01 Aligned_cols=224 Identities=13% Similarity=0.027 Sum_probs=145.0
Q ss_pred CeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC
Q 048801 329 AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN 408 (1715)
Q Consensus 329 ~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd 408 (1715)
-..+++|+|++.. ++++...++.|.+||..+++.. .+.. ...+.+++|+++
T Consensus 50 ~~egp~~~~~~~~--l~~~d~~~~~i~~~d~~~~~~~-~~~~--------------------------~~~v~~i~~~~d 100 (326)
T 2ghs_A 50 LGEGPTFDPASGT--AWWFNILERELHELHLASGRKT-VHAL--------------------------PFMGSALAKISD 100 (326)
T ss_dssp BEEEEEEETTTTE--EEEEEGGGTEEEEEETTTTEEE-EEEC--------------------------SSCEEEEEEEET
T ss_pred CCcCCeEeCCCCE--EEEEECCCCEEEEEECCCCcEE-EEEC--------------------------CCcceEEEEeCC
Confidence 3467889997653 5667777899999998776431 1111 234889999999
Q ss_pred CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec--CCCCCeeEEEEccCcccccccccccccccccccccCCcccC
Q 048801 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS--GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCH 486 (1715)
Q Consensus 409 G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~--gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~ 486 (1715)
|+++++. .+ .|.+||..+++. ..+.... .....++.+++++++
T Consensus 101 g~l~v~~-~~-gl~~~d~~~g~~-------~~~~~~~~~~~~~~~~~i~~d~~G-------------------------- 145 (326)
T 2ghs_A 101 SKQLIAS-DD-GLFLRDTATGVL-------TLHAELESDLPGNRSNDGRMHPSG-------------------------- 145 (326)
T ss_dssp TEEEEEE-TT-EEEEEETTTCCE-------EEEECSSTTCTTEEEEEEEECTTS--------------------------
T ss_pred CeEEEEE-CC-CEEEEECCCCcE-------EEEeeCCCCCCCCCCCCEEECCCC--------------------------
Confidence 9877765 34 499999876542 1111111 112357889999876
Q ss_pred ceEEEEcC------CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEE
Q 048801 487 DNIVTCSR------DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFV 560 (1715)
Q Consensus 487 ~~LaSgS~------DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~L 560 (1715)
.++++... .+.|..++ +++.. .+.........++|+|||+.|
T Consensus 146 ~l~v~~~~~~~~~~~~~l~~~~--~g~~~------------------------------~~~~~~~~~~~i~~s~dg~~l 193 (326)
T 2ghs_A 146 ALWIGTMGRKAETGAGSIYHVA--KGKVT------------------------------KLFADISIPNSICFSPDGTTG 193 (326)
T ss_dssp CEEEEEEETTCCTTCEEEEEEE--TTEEE------------------------------EEEEEESSEEEEEECTTSCEE
T ss_pred CEEEEeCCCcCCCCceEEEEEe--CCcEE------------------------------EeeCCCcccCCeEEcCCCCEE
Confidence 34443321 23444444 22110 000111235689999999877
Q ss_pred EEE-ecCCeEEEEECC--CC-ce-----EEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccc
Q 048801 561 LAA-IMDCRICVWNAV--DG-SL-----VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRF 631 (1715)
Q Consensus 561 aTg-s~DGtI~IWDl~--sg-~~-----l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~ 631 (1715)
+.+ +.++.|.+|++. +| .. +..+.........+++.+ ++.++++...++.|.+|+. +++.+..+..+..
T Consensus 194 yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~ 271 (326)
T 2ghs_A 194 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK 271 (326)
T ss_dssp EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECT-TCCEEEEEECSCS
T ss_pred EEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECC-CCCEEEEEECCCC
Confidence 555 456899999986 56 32 223333445678899988 5677766666788999998 7888888876666
Q ss_pred eEEEEEEc-CCCCEEEEEeC
Q 048801 632 KLVDGKFS-PDGTSIVLSDD 650 (1715)
Q Consensus 632 ~V~svafS-PDG~~LAsgs~ 650 (1715)
.+.+++|+ +|+..|++++.
T Consensus 272 ~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 272 QTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp BEEEEEEESTTSCEEEEEEB
T ss_pred CcEEEEEecCCCCEEEEEec
Confidence 79999998 89887766554
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-07 Score=124.94 Aligned_cols=297 Identities=12% Similarity=0.093 Sum_probs=173.7
Q ss_pred CCEEEEEeCCCeeEEEECCCCCceEEEeCCCCC-----------eEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCc
Q 048801 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGA-----------VTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365 (1715)
Q Consensus 297 g~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~-----------VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l 365 (1715)
+..|++++.++.|..+|..+|+.+..+...... ...+++ .+. .|++++.|+.|..+|..+|+.+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~---~v~v~~~dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKG---KVYVGAWDGRLIALDAATGKEV 151 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETT---EEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECC---EEEEEcCCCEEEEEECCCCCEE
Confidence 456777777889999999999988887643210 112333 233 6888889999999999999987
Q ss_pred ceecCC-CCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC------CCeEEEEeCCCCCccCCCCCc
Q 048801 366 PRIYLP-KPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS------DTFARVWSACKSSVEDSEQPI 438 (1715)
Q Consensus 366 ~~i~~~-~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~------DG~IrVWDl~t~~~~~~~~~~ 438 (1715)
..+... .... ...+.+.-...++ .+++++. +|.|+.||..+++........
T Consensus 152 W~~~~~~~~~~---------------------~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 209 (677)
T 1kb0_A 152 WHQNTFEGQKG---------------------SLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSV 209 (677)
T ss_dssp EEEETTTTCCS---------------------SCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred eeecCCcCcCc---------------------CcccccCcEEECC-EEEEEecccccCCCCEEEEEECCCCcEEEEeccC
Confidence 766442 1000 0001100001134 4444443 689999999887642110000
Q ss_pred eeee--------------eec---------CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC
Q 048801 439 HELD--------------VLS---------GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD 495 (1715)
Q Consensus 439 ~~l~--------------~l~---------gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D 495 (1715)
.... ... +.......+++++. ...|+.+..+
T Consensus 210 ~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~--------------------------~~~vy~~~~~ 263 (677)
T 1kb0_A 210 PGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE--------------------------LNTMYVGTGN 263 (677)
T ss_dssp CCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT--------------------------TTEEEEECCC
T ss_pred CCCccccccccccccccccccccCceeEeCCCcccccceeEcCC--------------------------CCEEEEECCC
Confidence 0000 000 00001112333332 2455555544
Q ss_pred C-------------------eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC
Q 048801 496 G-------------------SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD 556 (1715)
Q Consensus 496 G-------------------sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD 556 (1715)
+ .|..+|..+++..-.. ... ... ..... .......+....+
T Consensus 264 ~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~-----~~~----~~d----------~wd~~-~~~~p~l~~~~~d 323 (677)
T 1kb0_A 264 GSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHY-----QET----PGD----------NWDYT-STQPMILADIKIA 323 (677)
T ss_dssp EESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE-----ESS----TTC----------CSCCC-CCSCCEEEEEEET
T ss_pred CccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEE-----ecC----CCc----------ccccc-cCCCcEEEecccC
Confidence 3 5888888877643221 100 000 00000 0111222333347
Q ss_pred C---CEEEEEecCCeEEEEECCCCceEEEEecCC-----------CCe------------------------EEEEEccC
Q 048801 557 N---RFVLAAIMDCRICVWNAVDGSLVHSLTGHS-----------ASS------------------------YVLDVHPF 598 (1715)
Q Consensus 557 G---~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~-----------~~V------------------------~sLafSP~ 598 (1715)
| ..|++++.+|.|+++|..+|+++..+.-.. .++ ..++|+|+
T Consensus 324 G~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~ 403 (677)
T 1kb0_A 324 GKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ 403 (677)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT
T ss_pred CcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC
Confidence 7 688999999999999999999988765221 011 14678885
Q ss_pred CCcEEEEEe------------------------------------------CCCcEEEEECCCCceEEEEEcccceEEEE
Q 048801 599 NPRIAMSAG------------------------------------------YDGRTIVWDIWEGTPIRIYEIGRFKLVDG 636 (1715)
Q Consensus 599 dg~lLaSgs------------------------------------------~DGtI~VWDl~tgk~l~tl~~h~~~V~sv 636 (1715)
.+.+++... ..|.|..||+.+|+.+..+.. ..++...
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g 482 (677)
T 1kb0_A 404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGG 482 (677)
T ss_dssp TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCC
T ss_pred CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCc
Confidence 444443222 127899999999999988873 3345556
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCccccc
Q 048801 637 KFSPDGTSIVLSDDVGQIYLLNTGQGESQKD 667 (1715)
Q Consensus 637 afSPDG~~LAsgs~DG~I~IWdl~tGe~~k~ 667 (1715)
.++.+|.++++++.||.|++||..+|+.+..
T Consensus 483 ~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~ 513 (677)
T 1kb0_A 483 TLTTAGNVVFQGTADGRLVAYHAATGEKLWE 513 (677)
T ss_dssp EEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ceEeCCCEEEEECCCCcEEEEECCCCceeee
Confidence 6778888999999999999999999987643
|
| >3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A | Back alignment and structure |
|---|
Probab=98.87 E-value=2.2e-09 Score=124.34 Aligned_cols=88 Identities=20% Similarity=0.267 Sum_probs=81.1
Q ss_pred cccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHH
Q 048801 1628 SRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDW 1707 (1715)
Q Consensus 1628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~ 1707 (1715)
...++...|..+++....++|...+..|||++||++||++++|.+++++..||++|++||.+||.+++.|..+|+.|.+.
T Consensus 150 ~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~~~ 229 (265)
T 3uv5_A 150 MAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNV 229 (265)
T ss_dssp TTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred HhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 44566777888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC
Q 048801 1708 FNRTLNKL 1715 (1715)
Q Consensus 1708 ~~~~i~~~ 1715 (1715)
|.+.+..+
T Consensus 230 ~~~~~~~~ 237 (265)
T 3uv5_A 230 CYQTLTEY 237 (265)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988653
|
| >2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-09 Score=127.37 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=78.3
Q ss_pred cchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFN 1709 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~ 1709 (1715)
.+.+..|..+++....++|...+..||||+||++||++++|++++++..||++|++||.+||.+++.|..+|+.|.++|.
T Consensus 178 ~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~ 257 (311)
T 2r0y_A 178 VKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFN 257 (311)
T ss_dssp SCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 35667788888777788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc
Q 048801 1710 RTLNK 1714 (1715)
Q Consensus 1710 ~~i~~ 1714 (1715)
+.+.+
T Consensus 258 ~~~~~ 262 (311)
T 2r0y_A 258 YLIQK 262 (311)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98865
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-05 Score=107.51 Aligned_cols=328 Identities=11% Similarity=0.074 Sum_probs=205.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecC-------CCCCeEEEEECCCCCEEEEEeCCCeeEEEECC
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRG-------HEGDITDLAVSSNNTLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~g-------Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~ 315 (1715)
...|.++...++|.+.+ |+.++-|.+|+..+++....... ....|.++...++|.+.+. +.+ -|.+|+..
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIG-TFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEE-ESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEE-eCC-hhheEcCC
Confidence 46788998888886554 44444488899887665443222 1357999999988876554 445 58889987
Q ss_pred CCCceEEEeC-------CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCC
Q 048801 316 DGLPISVLRG-------HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 316 tg~~l~~L~g-------H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
++........ ....|.+|...+++. |..|+.++-|..|+..++.... +.....
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~----lWigt~~~Gl~~~~~~~~~~~~-~~~~~~--------------- 350 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG----MWLGTYFGGLNYYHPIRNRFKN-IRNIPY--------------- 350 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC----EEEEESSSCEEEECGGGGSSEE-ECCCTT---------------
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC----EEEEECCCCeEEeCCCcccceE-EcCCCC---------------
Confidence 7654332211 235799999998875 6777777779999876554321 110000
Q ss_pred CCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee------cCCCCCeeEEEEccCccc
Q 048801 389 PSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL------SGHENDVNYVQFSGCAVA 462 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l------~gH~~~V~sLafspdg~a 462 (1715)
........|.+++..++|.+. +|+.++-|..|+..++... ..... ......|.++...+++
T Consensus 351 ---~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~v~~i~~d~~g-- 417 (795)
T 4a2l_A 351 ---KNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFT-------SYTLQEDESARGIGSNNIKAVYVDEKK-- 417 (795)
T ss_dssp ---SSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEE-------EECCC------CCSCSCEEEEEEETTT--
T ss_pred ---CCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEE-------EEecCCCCcccCCCCccEEEEEEcCCC--
Confidence 011234569999999888754 4777777899998764321 11000 0123567888776654
Q ss_pred ccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccccc
Q 048801 463 SRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLL 542 (1715)
Q Consensus 463 s~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~ 542 (1715)
..|..|+.++-|.+||..+++... +. .. .. .
T Consensus 418 ------------------------~~lWigt~~~Gl~~~d~~~~~~~~--------~~--~~---------~~------~ 448 (795)
T 4a2l_A 418 ------------------------SLVYIGTHAGGLSILHRNSGQVEN--------FN--QR---------NS------Q 448 (795)
T ss_dssp ------------------------TEEEEEETTTEEEEEETTTCCEEE--------EC--TT---------TS------C
T ss_pred ------------------------CEEEEEeCcCceeEEeCCCCcEEE--------ee--cC---------CC------C
Confidence 327777877789999987643110 00 00 00 0
Q ss_pred CCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec------CCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 543 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG------HSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 543 ~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g------H~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
.....|.++...++|.+.+. +. +-|.+|+..+++....... ....|.++...+ ++.+.+. +. +-|.+|+
T Consensus 449 l~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWig-t~-~Gl~~~~ 523 (795)
T 4a2l_A 449 LVNENVYAILPDGEGNLWLG-TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWIG-GE-EGLSVFK 523 (795)
T ss_dssp CSCSCEEEEEECSSSCEEEE-ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEEE-ES-SCEEEEE
T ss_pred cCCCeeEEEEECCCCCEEEE-ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEEE-eC-CceEEEe
Confidence 12346889999988876654 44 4588999887755432211 235789998887 5555544 34 4588999
Q ss_pred CCCCceEEEEE-------cccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Q 048801 617 IWEGTPIRIYE-------IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGES 664 (1715)
Q Consensus 617 l~tgk~l~tl~-------~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~ 664 (1715)
..+++. .+. .....|.++...++|.+.+++. . .|..|+..+++.
T Consensus 524 ~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~ 574 (795)
T 4a2l_A 524 QEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQI 574 (795)
T ss_dssp EETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEE
T ss_pred CCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcE
Confidence 877765 332 1234688999999998666544 3 688899877643
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.1e-07 Score=107.72 Aligned_cols=238 Identities=13% Similarity=0.061 Sum_probs=150.6
Q ss_pred EEEecCCCCCeEEEEECCCCC-EEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEE
Q 048801 278 LASCRGHEGDITDLAVSSNNT-LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSpDg~-lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrI 356 (1715)
+..+..+......++|+++|+ +++++..++.|..|+. ++. +..+..+...+.++++.+++. ++++...++.|.+
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~---l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQR---LVHCEHGRRAITR 111 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSC---EEEEETTTTEEEE
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCC---EEEEECCCCEEEE
Confidence 344444556678899999998 6677777899999997 554 455666777899999999986 5566556678999
Q ss_pred EecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEE----ecC-------------CC
Q 048801 357 WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVT----GSS-------------DT 419 (1715)
Q Consensus 357 WDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~Lat----Gs~-------------DG 419 (1715)
|+.. +... .+... . .......+.+++++++|+++++ |.. .+
T Consensus 112 ~~~~-g~~~-~~~~~-----~---------------~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~ 169 (305)
T 3dr2_A 112 SDAD-GQAH-LLVGR-----Y---------------AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHH 169 (305)
T ss_dssp ECTT-SCEE-EEECE-----E---------------TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred ECCC-CCEE-EEEec-----c---------------CCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCC
Confidence 9875 4421 11100 0 0001223678999999998886 432 25
Q ss_pred eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC----
Q 048801 420 FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD---- 495 (1715)
Q Consensus 420 ~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D---- 495 (1715)
.|..|+..+++. . .+. .....+.++|+|++ ..|+.+...
T Consensus 170 ~v~~~d~~~g~~-------~---~~~-~~~~p~gl~~spdg--------------------------~~lyv~~~~~~~~ 212 (305)
T 3dr2_A 170 SVYRLPPDGSPL-------Q---RMA-DLDHPNGLAFSPDE--------------------------QTLYVSQTPEQGH 212 (305)
T ss_dssp EEEEECSSSCCC-------E---EEE-EESSEEEEEECTTS--------------------------SEEEEEECCC---
T ss_pred eEEEEcCCCCcE-------E---EEe-cCCCCcceEEcCCC--------------------------CEEEEEecCCcCC
Confidence 677777755432 1 111 23456789999986 445555443
Q ss_pred --CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEE
Q 048801 496 --GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 573 (1715)
Q Consensus 496 --GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWD 573 (1715)
+.|.+|++.... ... . ..+. .........++++++|++.+ ++.+ .|.+|+
T Consensus 213 ~~~~i~~~~~~~~~-l~~---~-~~~~---------------------~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~ 264 (305)
T 3dr2_A 213 GSVEITAFAWRDGA-LHD---R-RHFA---------------------SVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFD 264 (305)
T ss_dssp CCCEEEEEEEETTE-EEE---E-EEEE---------------------CCSSSCCCSEEECTTSCEEE-CCSS-EEEEEC
T ss_pred CCCEEEEEEecCCC-ccC---C-eEEE---------------------ECCCCCCCeEEECCCCCEEE-ecCC-cEEEEC
Confidence 789999886432 100 0 0000 00122345688999999554 4444 599999
Q ss_pred CCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCC
Q 048801 574 AVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDG 610 (1715)
Q Consensus 574 l~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DG 610 (1715)
. +++.+..+..+. .+.+++|++ ++..|+.++.++
T Consensus 265 ~-~g~~~~~~~~~~-~~~~~~f~~-d~~~L~it~~~~ 298 (305)
T 3dr2_A 265 S-DGQLLGHIPTPG-TASNCTFDQ-AQQRLFITGGPC 298 (305)
T ss_dssp T-TSCEEEEEECSS-CCCEEEECT-TSCEEEEEETTE
T ss_pred C-CCCEEEEEECCC-ceeEEEEeC-CCCEEEEEcCCe
Confidence 8 688888887655 588999997 444444445454
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-06 Score=104.64 Aligned_cols=279 Identities=11% Similarity=0.055 Sum_probs=166.8
Q ss_pred CCEEEEEeCCCeeEEEECCCCCceEEEeCC---------CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcce
Q 048801 297 NTLVASASNDFVIRVWRLPDGLPISVLRGH---------TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPR 367 (1715)
Q Consensus 297 g~lLASGS~DGtIrVWDl~tg~~l~~L~gH---------~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~ 367 (1715)
+..|++++.++.|..+|..+|+.+...... ...+.+.....+ . .++.++.++.|..+|..+++.+..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~v~v~~~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSG-G---HVYIGSEKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEET-T---EEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeC-C---EEEEEcCCCEEEEEECCCCCEEEE
Confidence 567888888999999999999988776542 122322222223 3 678888899999999999987655
Q ss_pred ecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCC
Q 048801 368 IYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGH 447 (1715)
Q Consensus 368 i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH 447 (1715)
....... ... ..+ .+..+++++.++.|..+|..+++. +......
T Consensus 129 ~~~~~~~---------------------~~~----p~~--~~~~v~v~~~~g~l~~~d~~tG~~---------~W~~~~~ 172 (376)
T 3q7m_A 129 TKVAGEA---------------------LSR----PVV--SDGLVLIHTSNGQLQALNEADGAV---------KWTVNLD 172 (376)
T ss_dssp EECSSCC---------------------CSC----CEE--ETTEEEEECTTSEEEEEETTTCCE---------EEEEECC
T ss_pred EeCCCce---------------------EcC----CEE--ECCEEEEEcCCCeEEEEECCCCcE---------EEEEeCC
Confidence 5432110 000 111 134677788899999999987643 2221111
Q ss_pred CCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCC
Q 048801 448 ENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPP 527 (1715)
Q Consensus 448 ~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~ 527 (1715)
. .+..+ .... ........++.++.+|.|..+|..+++.. |..... .+.
T Consensus 173 ~-~~~~~--~~~~--------------------~~~~~~~~v~~g~~~g~l~~~d~~tG~~~-----w~~~~~----~~~ 220 (376)
T 3q7m_A 173 M-PSLSL--RGES--------------------APTTAFGAAVVGGDNGRVSAVLMEQGQMI-----WQQRIS----QAT 220 (376)
T ss_dssp C--------CCCC--------------------CCEEETTEEEECCTTTEEEEEETTTCCEE-----EEEECC----C--
T ss_pred C-Cceee--cCCC--------------------CcEEECCEEEEEcCCCEEEEEECCCCcEE-----EEEecc----cCC
Confidence 1 11000 0000 00011357888888999999999886633 221110 000
Q ss_pred CCCCCCCCCCccccc-CCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEE
Q 048801 528 LPPQPPRGGPRQRLL-PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSA 606 (1715)
Q Consensus 528 ~~~~~~~g~~~~~l~-~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSg 606 (1715)
.. .....+. ....+ .+ .+..|++++.++.|..+|..+|+.+..... .....+... + ..++.+
T Consensus 221 ~~------~~~~~~~~~~~~p----~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~--~-~~l~~~ 283 (376)
T 3q7m_A 221 GS------TEIDRLSDVDTTP----VV--VNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIVD--G-NRIYLV 283 (376)
T ss_dssp ---------------CCCCCC----EE--ETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEEE--T-TEEEEE
T ss_pred CC------cccccccccCCCc----EE--ECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceEE--C-CEEEEE
Confidence 00 0000000 00001 11 245677788899999999999998877653 234455442 3 455567
Q ss_pred eCCCcEEEEECCCCceEEEEEcc-cceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 607 GYDGRTIVWDIWEGTPIRIYEIG-RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 607 s~DGtI~VWDl~tgk~l~tl~~h-~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
+.+|.|..+|..+|+.+...... ...+....+ .+..|++++.+|.|++||..+|+.+.
T Consensus 284 ~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 284 DQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp ETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence 78999999999999988777522 222222222 35678889999999999999998653
|
| >2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3e-09 Score=128.16 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=78.7
Q ss_pred cchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFN 1709 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~ 1709 (1715)
.+.+..|..+++....++|...+..||||+||++||++++|+++++++.||++|++||.+||.+++.|..+|+.|.++|.
T Consensus 228 ~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~ 307 (361)
T 2r10_A 228 VKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFN 307 (361)
T ss_dssp SCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 35667788888777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc
Q 048801 1710 RTLNK 1714 (1715)
Q Consensus 1710 ~~i~~ 1714 (1715)
+.+.+
T Consensus 308 ~~~~~ 312 (361)
T 2r10_A 308 YLIQK 312 (361)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98865
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.81 E-value=4.7e-08 Score=119.13 Aligned_cols=180 Identities=9% Similarity=0.023 Sum_probs=126.7
Q ss_pred ceeEEEEccCCCeEEEecCCCeEEEEeCCCCC--ccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccc
Q 048801 399 QILCCAYNANGTVFVTGSSDTFARVWSACKSS--VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476 (1715)
Q Consensus 399 ~VtslafSpdG~~LatGs~DG~IrVWDl~t~~--~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~ 476 (1715)
.+..+++++...+|++|+.++ +.+|++.... ........... ....+.. |..|+| ++
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~---------------- 97 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HG---------------- 97 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ET----------------
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CC----------------
Confidence 588999999999999999875 5569875422 00000001111 1223455 999999 43
Q ss_pred ccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC
Q 048801 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD 556 (1715)
Q Consensus 477 ~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD 556 (1715)
..|+++ .++.|++||+.+.... .....+...+.++.+.+.
T Consensus 98 ----------~~L~v~-~~~~l~v~dv~sl~~~-----------------------------~~~~~~~~~v~~i~~~~p 137 (388)
T 1xip_A 98 ----------DQVLVS-TRNALYSLDLEELSEF-----------------------------RTVTSFEKPVFQLKNVNN 137 (388)
T ss_dssp ----------TEEEEE-ESSEEEEEESSSTTCE-----------------------------EEEEECSSCEEEEEECSS
T ss_pred ----------CEEEEE-cCCcEEEEEchhhhcc-----------------------------CccceeecceeeEEecCC
Confidence 678877 8899999999863210 011223344666666654
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce--EEEE------E-
Q 048801 557 NRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTP--IRIY------E- 627 (1715)
Q Consensus 557 G~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~--l~tl------~- 627 (1715)
. +++++.||.|.+||+.++.... +...|+|++||| .+ ++.|..||+|++|+...+.. .+++ .
T Consensus 138 ~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~ 208 (388)
T 1xip_A 138 T--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEE 208 (388)
T ss_dssp E--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS-SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHT
T ss_pred C--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCCccccccceecCCccccc
Confidence 3 8889999999999999887654 345799999999 44 56789999999999877775 5666 2
Q ss_pred --cccceEEEEEEcCCCCEEEEE
Q 048801 628 --IGRFKLVDGKFSPDGTSIVLS 648 (1715)
Q Consensus 628 --~h~~~V~svafSPDG~~LAsg 648 (1715)
+|...|.++.|.+++.+|++=
T Consensus 209 ~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 209 LPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SCTTTSEEEEEEESSSSEEEEEE
T ss_pred ccCCCeeEEEEEEecCCeEEEEE
Confidence 256789999999999988853
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=6.1e-11 Score=144.09 Aligned_cols=141 Identities=8% Similarity=0.016 Sum_probs=79.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCC-eE-
Q 048801 254 SGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGA-VT- 331 (1715)
Q Consensus 254 DG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~-Vt- 331 (1715)
++..|++++.||.|..||..+|+.+..+.. +.+.+..+..++.++++++.||.|+.||..+|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 577999999999999999999999988876 56666666678888888889999999999999887776543211 10
Q ss_pred EEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCe
Q 048801 332 AIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTV 411 (1715)
Q Consensus 332 sLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~ 411 (1715)
+..+. .+. .|++++.++.|+.||..+|+.+..+.... ...++|++..
T Consensus 86 sp~~~-~~~---~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----------------------------~~~~~p~~~~ 132 (369)
T 2hz6_A 86 SPCRS-SDG---ILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----------------------------ADSLSPSTSL 132 (369)
T ss_dssp CSCC---------CCCCEEEEEEEEECCC---------------------------------------------------
T ss_pred CceEe-cCC---EEEEEeCCCEEEEEECCCCcEEEEecCCC-----------------------------cccccccCCE
Confidence 01111 222 56777888889999988887654332100 1123446666
Q ss_pred EEEecCCCeEEEEeCCCC
Q 048801 412 FVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 412 LatGs~DG~IrVWDl~t~ 429 (1715)
|++++.++.|+.||..++
T Consensus 133 v~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 133 LYLGRTEYTITMYDTKTR 150 (369)
T ss_dssp EEEEEEEEEEECCCSSSS
T ss_pred EEEEecCCEEEEEECCCC
Confidence 777777777777777654
|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.1e-09 Score=118.64 Aligned_cols=105 Identities=12% Similarity=0.167 Sum_probs=89.4
Q ss_pred CCCChHHHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhh---hhhhhHHHHHHHHHH
Q 048801 1606 PEIDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVN---NYYRSLEAAKDDINV 1682 (1715)
Q Consensus 1606 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n---~~Yr~~~~~~~d~~~ 1682 (1715)
..+.+..+.++...|..|... +....|..++.. ..++|...+..||||+||++||++ +.|++++++..||++
T Consensus 76 ~~ls~~~~~~c~~il~~l~~~----~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~l 150 (207)
T 3u5n_A 76 QGLSPVDQRKCERLLLYLYCH----ELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRL 150 (207)
T ss_dssp CSSCHHHHHHHHHHHHHHHTS----TTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHhc----cchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHH
Confidence 457777888887777777653 344455556554 679999999999999999999998 699999999999999
Q ss_pred HHhhhhhccC-----------------CChHHHHHHHHHHHHHHHHhhcC
Q 048801 1683 MLSNAESYFI-----------------KNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1683 ~~~Na~~~n~-----------------~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
|++||.+||. +++.|.+.|+.|...|.+.+..|
T Consensus 151 i~~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~ 200 (207)
T 3u5n_A 151 IFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEI 200 (207)
T ss_dssp HHHHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 99999999999999999988753
|
| >3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-09 Score=126.26 Aligned_cols=86 Identities=16% Similarity=0.269 Sum_probs=78.8
Q ss_pred ccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHH
Q 048801 1629 RKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWF 1708 (1715)
Q Consensus 1629 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~ 1708 (1715)
..+....|..+++....++|...+..||||+||++||++++|+++++++.||++|++||.+||.++++|..+|+.|.+.|
T Consensus 61 ~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~~ 140 (292)
T 3aad_A 61 DLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLC 140 (292)
T ss_dssp SSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHHHTHHHHTT
T ss_pred hCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 34667778888877788999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhc
Q 048801 1709 NRTLNK 1714 (1715)
Q Consensus 1709 ~~~i~~ 1714 (1715)
.+.+..
T Consensus 141 ~~~~~~ 146 (292)
T 3aad_A 141 DEKLKE 146 (292)
T ss_dssp TTTGGG
T ss_pred Hhhhhc
Confidence 877654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.77 E-value=8.6e-08 Score=112.34 Aligned_cols=264 Identities=12% Similarity=0.033 Sum_probs=164.0
Q ss_pred EEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceec
Q 048801 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIY 369 (1715)
Q Consensus 290 sLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~ 369 (1715)
++.+..++. |..++.++.|..|| .+++.+.....+...+.++.+.+++ .|..++.+ |..+|. +++....+.
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g----~l~v~t~~--l~~~d~-~g~~~~~~~ 94 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDG----TIYFGSDK--VYAINP-DGTEKWRFD 94 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTT----EECCSSCE--EEEECC-CGGGGGGSC
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCC----cEEEecCc--EEEECC-CCcEEEEEE
Confidence 345555564 56667788999999 8888766555444556777777766 46666655 888886 554433321
Q ss_pred CCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC
Q 048801 370 LPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN 449 (1715)
Q Consensus 370 ~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~ 449 (1715)
... ......++. +..|.+++.++.|..+|.. ++. ......+..
T Consensus 95 ~~~-------------------------~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~---------~~~~~~~~~ 137 (330)
T 3hxj_A 95 TKK-------------------------AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE---------KWRFKTKKA 137 (330)
T ss_dssp C------------------------------CCEEEE--TTEEEEECTTSEEEEECTT-SCE---------EEEEECSSC
T ss_pred CCC-------------------------CcccCceEE--CCEEEEEecCCEEEEEcCC-CCE---------EEEEcCCCc
Confidence 110 001112222 4456677778999999986 421 222222333
Q ss_pred CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCC
Q 048801 450 DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLP 529 (1715)
Q Consensus 450 ~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~ 529 (1715)
.+.++...++ ..|..++.++.|..+|.. +......
T Consensus 138 ~~~~~~~~~~---------------------------g~l~vgt~~~~l~~~d~~-g~~~~~~----------------- 172 (330)
T 3hxj_A 138 IYATPIVSED---------------------------GTIYVGSNDNYLYAINPD-GTEKWRF----------------- 172 (330)
T ss_dssp CCSCCEECTT---------------------------SCEEEECTTSEEEEECTT-SCEEEEE-----------------
T ss_pred eeeeeEEcCC---------------------------CEEEEEcCCCEEEEECCC-CCEeEEE-----------------
Confidence 3444444433 357778888999999876 4321110
Q ss_pred CCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCC
Q 048801 530 PQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYD 609 (1715)
Q Consensus 530 ~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~D 609 (1715)
......+.++.+.++|.+++ ++ +.|..|| .+++.+..+......+.++...+ ++.+. .++.+
T Consensus 173 ------------~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~g~l~-v~t~~ 234 (330)
T 3hxj_A 173 ------------KTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISE-DGTIY-VTSLD 234 (330)
T ss_dssp ------------ECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECT-TSCEE-EEETT
T ss_pred ------------ecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECC-CCeEE-EEcCC
Confidence 01122355567777777555 44 7899999 78888888776667788888877 44544 46677
Q ss_pred CcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 610 GRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 610 GtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
+.|..++ .+++.+..+......+..+.+.++|. |.+++.+|.|+.++. +|+..
T Consensus 235 ~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~ 287 (330)
T 3hxj_A 235 GHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEK 287 (330)
T ss_dssp TEEEEEC-TTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEE
T ss_pred CeEEEEC-CCCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEE
Confidence 8888887 47777777765444344556666664 666778889999996 66544
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.8e-07 Score=121.06 Aligned_cols=158 Identities=12% Similarity=0.083 Sum_probs=100.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCC--CCCeEEEEECC---CCCEEEEEe-----CCCeeEEEECCCCCceEEEe
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGH--EGDITDLAVSS---NNTLVASAS-----NDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gH--s~~VtsLafSp---Dg~lLASGS-----~DGtIrVWDl~tg~~l~~L~ 324 (1715)
+..|++++.|+.|..+|..+|+.+-.+... ......+..+| ++..++..+ .+|.|+.||..+|+.+..+.
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 568888999999999999999998776542 11111111122 454444322 37899999999999988775
Q ss_pred CCC-------------------------------CCeEEEEecCCCCcceEEEEecCCCc-------------------E
Q 048801 325 GHT-------------------------------GAVTAIAFSPRPSAIYQLLSSSDDGT-------------------C 354 (1715)
Q Consensus 325 gH~-------------------------------~~VtsLafSPdg~~~~~LaSgS~DGt-------------------V 354 (1715)
... .....+++.|+.. +|+.+..++. |
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~---~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN---LLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT---EEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC---EEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 210 0112577888776 6777776653 9
Q ss_pred EEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC---eEEEecCCCeEEEEeCCCCCc
Q 048801 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT---VFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 355 rIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~---~LatGs~DG~IrVWDl~t~~~ 431 (1715)
..||..+|+.+..+........ .......+....+..+|+ .|+.++.+|.++++|..++++
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~w----------------d~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAW----------------DYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCS----------------CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred EEEEccCCceeEeeecCCcccc----------------cccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence 9999999987766543211000 000011122223333665 788999999999999998865
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=2.1e-06 Score=112.38 Aligned_cols=354 Identities=10% Similarity=0.055 Sum_probs=194.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCC----------e-EEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEGD----------I-TDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~----------V-tsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L 323 (1715)
+..|++++.++.|..+|..+|+.+-.+...... + ..+++ .+..|+.++.|+.|..+|..+|+.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 557777888899999999999999887543211 0 11223 3567888889999999999999998877
Q ss_pred eCCC----CCeEE-EEecCCCCcceEEEEecC------CCcEEEEecCCCCCcceecCCC-CCCCc-cCcc---CCCCCC
Q 048801 324 RGHT----GAVTA-IAFSPRPSAIYQLLSSSD------DGTCRIWDARYSQYSPRIYLPK-PPDAI-TGKS---NVPSNN 387 (1715)
Q Consensus 324 ~gH~----~~Vts-LafSPdg~~~~~LaSgS~------DGtVrIWDl~tg~~l~~i~~~~-~~~~i-~g~~---~~~~~~ 387 (1715)
.... ..+.+ ..+. ++ .++++.. +|.|..+|..+|+.+..+.... .+... .... ......
T Consensus 144 ~~~~~~~~~~~~~~P~v~-~~----~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV-KG----KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE-TT----EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred ccCCCCCcceecCCCEEE-CC----EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 6421 11111 1111 22 3444432 5899999999999887765421 11000 0000 000000
Q ss_pred C-CCCCCCCCCcceeEEEEccCCCeEEEecCCCe-------------------EEEEeCCCCCccCCCCCceeeeeec--
Q 048801 388 G-PSSSNGLQSHQILCCAYNANGTVFVTGSSDTF-------------------ARVWSACKSSVEDSEQPIHELDVLS-- 445 (1715)
Q Consensus 388 ~-~~~~~~~h~~~VtslafSpdG~~LatGs~DG~-------------------IrVWDl~t~~~~~~~~~~~~l~~l~-- 445 (1715)
. ..............+++.+++.++++++.++. |..+|..+++. +..+.
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~---------~W~~~~~ 289 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL---------AWHYQVT 289 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE---------EEEEESS
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce---------eeEeecC
Confidence 0 00000011222345788888888888877663 88888887653 11111
Q ss_pred CCC-------CCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc----c
Q 048801 446 GHE-------NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG----R 514 (1715)
Q Consensus 446 gH~-------~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~----~ 514 (1715)
.|. .++....+..++. ....++.++.+|.+.++|..+++.+.... .
T Consensus 290 ~~~~wd~~~~~~~~~~d~~~~G~-----------------------~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~ 346 (668)
T 1kv9_A 290 PGDSWDFTATQQITLAELNIDGK-----------------------PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVT 346 (668)
T ss_dssp TTCCSCCCCCSCEEEEEEEETTE-----------------------EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCC
T ss_pred CCccccccCCCCcEEEEeccCCc-----------------------EEEEEEEECCCCEEEEEECCCCCEeccccccccc
Confidence 121 1111111111110 01368899999999999999988653211 1
Q ss_pred ccccccccCCCCCCCCC-CCCCCCcccccCCCC--CeeEEEeCCCCCEEEEEe---------------------------
Q 048801 515 WTRAYHLKVPPPPLPPQ-PPRGGPRQRLLPTPR--GVNMIVWSLDNRFVLAAI--------------------------- 564 (1715)
Q Consensus 515 ~~~~~~l~~~~~~~~~~-~~~g~~~~~l~~h~~--~VtslafSPDG~~LaTgs--------------------------- 564 (1715)
|...+......+..... ...+..........+ .-..++++|+..++++..
T Consensus 347 w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 426 (668)
T 1kv9_A 347 WAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFA 426 (668)
T ss_dssp SEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGG
T ss_pred cccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccc
Confidence 22211110000000000 000000000111100 112367777766655421
Q ss_pred ---------cCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceE-E
Q 048801 565 ---------MDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKL-V 634 (1715)
Q Consensus 565 ---------~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V-~ 634 (1715)
.+|.|..||+.+|+.+..+..+.. +....+.. .+.+++.++.||.|++||..+|+.+..+....... .
T Consensus 427 ~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~ 504 (668)
T 1kv9_A 427 DATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH-WNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAA 504 (668)
T ss_dssp GCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred ccCCCCCCCccceEEEEeCCCCcEEEEccCCCC-CcCceeEe-CCCEEEEECCcccchhhhhhcChhheEecCCCCcccC
Confidence 247899999999999988764432 22223333 44567778999999999999999999998653221 2
Q ss_pred EEEEcCCCC-EEEEEe
Q 048801 635 DGKFSPDGT-SIVLSD 649 (1715)
Q Consensus 635 svafSPDG~-~LAsgs 649 (1715)
-+.+..+|+ ++++++
T Consensus 505 p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 505 PMTFELAGRQYVAIMA 520 (668)
T ss_dssp CEEEEETTEEEEEEEE
T ss_pred ceEEEECCEEEEEEEe
Confidence 344556777 444443
|
| >2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A | Back alignment and structure |
|---|
Probab=98.73 E-value=6.7e-09 Score=122.38 Aligned_cols=83 Identities=12% Similarity=0.131 Sum_probs=76.1
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNR 1710 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~ 1710 (1715)
..+..|..+......++|...+..||||+||++|| ..||.+++++++||++|++||.+||++++.|.++|+.|.+.|.+
T Consensus 46 ~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl-~~y~~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~~~~ 124 (311)
T 2r0y_A 46 DIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD-YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEF 124 (311)
T ss_dssp HHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC-CCSTTHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred chhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH-hcccCCHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 45677888888888899999999999999999999 77878999999999999999999999999999999999999998
Q ss_pred Hhhc
Q 048801 1711 TLNK 1714 (1715)
Q Consensus 1711 ~i~~ 1714 (1715)
.+.+
T Consensus 125 ~~~k 128 (311)
T 2r0y_A 125 EVLK 128 (311)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7643
|
| >3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=9.3e-09 Score=120.50 Aligned_cols=86 Identities=21% Similarity=0.279 Sum_probs=79.4
Q ss_pred ccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHH
Q 048801 1629 RKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWF 1708 (1715)
Q Consensus 1629 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~ 1708 (1715)
..+....|..+++....++|...+..|||++||++||++++|.+++++..||++|++||.+||.+++.|..+|+.|.+.|
T Consensus 184 ~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~~~~ 263 (292)
T 3aad_A 184 AVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVC 263 (292)
T ss_dssp GSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH
T ss_pred cCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 34566778888877788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc
Q 048801 1709 NRTLNK 1714 (1715)
Q Consensus 1709 ~~~i~~ 1714 (1715)
.+.+..
T Consensus 264 ~~~~~~ 269 (292)
T 3aad_A 264 YQTLTE 269 (292)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.9e-05 Score=101.08 Aligned_cols=331 Identities=10% Similarity=0.053 Sum_probs=199.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec-------CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR-------GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD 316 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~-------gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t 316 (1715)
..|.++..+++|.+.+. +.+ -|.+||..+++...... .....|.+|...++|.+ ..|+..+-|.+++..+
T Consensus 211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKL-WIATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEE-EEEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCE-EEEeCCCCeEEECCCC
Confidence 56999999998876554 444 58889987765432211 12457999999888864 4566645688899876
Q ss_pred CCceEEEe--------------CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccC
Q 048801 317 GLPISVLR--------------GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSN 382 (1715)
Q Consensus 317 g~~l~~L~--------------gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~ 382 (1715)
+....... -....|.+|...+++. |..|+.++-|..++........ +... +..
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~----lWigt~~~Gl~~~~~~~~~~~~-~~~~-~~~------- 354 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN----IWIGTWGGGINFISNAPPTFHT-WSYS-PTQ------- 354 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCC----EEEEEBSSCEEEECSSCCSCEE-EC-----C-------
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC----EEEEecCCeEEEeCCCCCccee-eccC-ccc-------
Confidence 65332111 1245789999988874 6677767778889876554321 1100 000
Q ss_pred CCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccc
Q 048801 383 VPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVA 462 (1715)
Q Consensus 383 ~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~a 462 (1715)
..........|.+++..++|.+. +|+.++-|.+|+..++..... ..........|.++...+++
T Consensus 355 -------~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~------~~~~~~~~~~v~~i~~d~~g-- 418 (781)
T 3v9f_A 355 -------MNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYN------KENRELLSNSVLCSLKDSEG-- 418 (781)
T ss_dssp -------CCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----------CCCSBEEEEEECTTS--
T ss_pred -------cccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEc------cCCCCCCCcceEEEEECCCC--
Confidence 00011224568999998888754 566566688888765321000 00001234567777776543
Q ss_pred ccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccccc
Q 048801 463 SRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLL 542 (1715)
Q Consensus 463 s~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~ 542 (1715)
.|..|+.++-|.+++..+++... +. . . .
T Consensus 419 -------------------------~lWigt~~~Gl~~~~~~~~~~~~--------~~--~-----------~------~ 446 (781)
T 3v9f_A 419 -------------------------NLWFGTYLGNISYYNTRLKKFQI--------IE--L-----------E------K 446 (781)
T ss_dssp -------------------------CEEEEETTEEEEEECSSSCEEEE--------CC--S-----------T------T
T ss_pred -------------------------CEEEEeccCCEEEEcCCCCcEEE--------ec--c-----------C------C
Confidence 56667777778888876543110 00 0 0 0
Q ss_pred CCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecC-----CCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 543 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH-----SASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 543 ~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH-----~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
.....|.++...++|.+.+ |+. +-|.+|+..+++........ ...|.++...+ ++.+.+ |+.++-|..||.
T Consensus 447 ~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~ 522 (781)
T 3v9f_A 447 NELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTP 522 (781)
T ss_dssp TCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECT
T ss_pred CCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeC
Confidence 1234688999988887555 555 56889998877654433222 46789998877 555554 444344888987
Q ss_pred CCCceEEEEEc----ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Q 048801 618 WEGTPIRIYEI----GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGES 664 (1715)
Q Consensus 618 ~tgk~l~tl~~----h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~ 664 (1715)
.+++. ..+.. ....|.++...++|.+.+++. .|.|..|+..+++.
T Consensus 523 ~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~ 571 (781)
T 3v9f_A 523 DMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY 571 (781)
T ss_dssp TCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC
T ss_pred CCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE
Confidence 66543 33431 134688999999998666554 66658888877653
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.65 E-value=9.4e-05 Score=98.31 Aligned_cols=344 Identities=10% Similarity=0.007 Sum_probs=200.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec-------CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR-------GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD 316 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~-------gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t 316 (1715)
..|.++...++|.+. .|+.++-|..|+..+++...... -....|.+|...++|.+.+. +.. -|.+||..+
T Consensus 163 ~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~ 239 (781)
T 3v9f_A 163 EQTWTATEAEDGKLY-IGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIG-TSK-GLALFNANT 239 (781)
T ss_dssp CCEEEEEEEETTEEE-EEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEE-ETT-EEEEEETTT
T ss_pred cceEEEEECCCCCEE-EEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEE-eCC-cHheECCCC
Confidence 568899888887554 46666568889988765433211 11357999999988876654 444 588899876
Q ss_pred CCceEEEe-------CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCC
Q 048801 317 GLPISVLR-------GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 317 g~~l~~L~-------gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
+....... .....|.+|...+++ .|..|+..+-|.++|..++........ ....+ ...
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g----~lWigt~~~Gl~~~~~~~~~~~~~~~~--~f~~~---------~~~ 304 (781)
T 3v9f_A 240 ETFTNFHNNPGNIHGALSSYIFSIKQLKDN----KLWIATELNGIMILDLQQNQFLLPEQI--RFEFI---------REG 304 (781)
T ss_dssp TEEEC-----------CCCCEEEEEECTTS----EEEEEESSSCEEEEETTCC-----------CEEE---------CBC
T ss_pred CcEEEEEcCCCccccccCceEEEEEECCCC----CEEEEeCCCCeEEECCCCCeeeeeecc--ccccc---------cCC
Confidence 64332211 123568999988877 466677655688898876553211100 00000 000
Q ss_pred CCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccc
Q 048801 390 SSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSD 469 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~ 469 (1715)
..........|.++....+|. |.+|+.++-|..|+..+......................|.++...+++
T Consensus 305 ~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--------- 374 (781)
T 3v9f_A 305 DNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQG--------- 374 (781)
T ss_dssp SSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTS---------
T ss_pred CCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCC---------
Confidence 001123355699999999887 4556666778888876543210000000000001123467777776654
Q ss_pred cccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCee
Q 048801 470 AFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVN 549 (1715)
Q Consensus 470 ~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vt 549 (1715)
.|..|+.++-|.+|+..++.... +. .. .......|.
T Consensus 375 ------------------~lWigt~~~Gl~~~~~~~~~~~~--------~~---~~---------------~~~~~~~v~ 410 (781)
T 3v9f_A 375 ------------------KLWIGTDGGGINVFENGKRVAIY--------NK---EN---------------RELLSNSVL 410 (781)
T ss_dssp ------------------CEEEEEBSSCEEEEETTEEEEEC--------C-----------------------CCCSBEE
T ss_pred ------------------CEEEEeCCCcEEEEECCCCeEEE--------cc---CC---------------CCCCCcceE
Confidence 56677767778888876432100 00 00 011235688
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe--cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE
Q 048801 550 MIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT--GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 550 slafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~--gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~ 627 (1715)
+++..++|.+.+ |+.++-|.+++..+++...... .....|.++...+ ++.+.+ |+. +-|.+||..+++......
T Consensus 411 ~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~ 486 (781)
T 3v9f_A 411 CSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKKVIHHYD 486 (781)
T ss_dssp EEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSSCCEEEC
T ss_pred EEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCeEEeccc
Confidence 999888887555 7776779999987775433221 1346788988876 555544 445 558999988776544332
Q ss_pred cc-----cceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Q 048801 628 IG-----RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGES 664 (1715)
Q Consensus 628 ~h-----~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~ 664 (1715)
.. ...|.++...++|.+.+.+. .+.|..|+..+++.
T Consensus 487 ~~~~~~~~~~i~~i~~d~~g~lWigt~-~~Gl~~~~~~~~~~ 527 (781)
T 3v9f_A 487 TSNSQLLENFVRSIAQDSEGRFWIGTF-GGGVGIYTPDMQLV 527 (781)
T ss_dssp TTTSSCSCSCEEEEEECTTCCEEEEES-SSCEEEECTTCCEE
T ss_pred CcccccccceeEEEEEcCCCCEEEEEc-CCCEEEEeCCCCeE
Confidence 22 35688999999998666544 34477888766643
|
| >2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-08 Score=121.59 Aligned_cols=82 Identities=11% Similarity=0.119 Sum_probs=75.3
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNR 1710 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~ 1710 (1715)
..+..|..+......++|+..+..||||+||++|| +.||.+++++++||++|++||.+||.+++.|.++|+.|.+.|.+
T Consensus 96 ~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl-~~y~~~~~~f~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~~~~ 174 (361)
T 2r10_A 96 DIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD-YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEF 174 (361)
T ss_dssp HHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC-CCSTTHHHHHHHHHHHHHHHHHHHBCSSSHHHHHHHHHHHHHHH
T ss_pred cccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh-hccCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 44566888888888899999999999999999999 78888999999999999999999999999999999999999998
Q ss_pred Hhh
Q 048801 1711 TLN 1713 (1715)
Q Consensus 1711 ~i~ 1713 (1715)
.+.
T Consensus 175 ~~~ 177 (361)
T 2r10_A 175 EVL 177 (361)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.60 E-value=5.3e-07 Score=113.98 Aligned_cols=295 Identities=11% Similarity=0.070 Sum_probs=181.5
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEec-----------------------------------C----CCCCeEEEEECC---
Q 048801 258 VITGSDDRLVKIWSMETAFCLASCR-----------------------------------G----HEGDITDLAVSS--- 295 (1715)
Q Consensus 258 LaTGS~DGtIrIWDl~tgk~l~tL~-----------------------------------g----Hs~~VtsLafSp--- 295 (1715)
+.+|+..|.|+|+-+-+++.+..+. | ..+.....++|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 5678888999999888887776542 1 012333456665
Q ss_pred --CCCEEEEEeC-CCeeEEEECCCCCceEEEeC-CCCCeEEEEe-c-CCCCcceEEEEec------------------CC
Q 048801 296 --NNTLVASASN-DFVIRVWRLPDGLPISVLRG-HTGAVTAIAF-S-PRPSAIYQLLSSS------------------DD 351 (1715)
Q Consensus 296 --Dg~lLASGS~-DGtIrVWDl~tg~~l~~L~g-H~~~VtsLaf-S-Pdg~~~~~LaSgS------------------~D 351 (1715)
||++|+.... ++.|.+.|+.+.++...+.- ....+..+++ + |++. ++++++ .+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~---~v~~~~~~~~p~~~dg~~l~~~~~~~ 174 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSN---YVFCNGEDETPLVNDGTNMEDVANYV 174 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCS---EEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCc---EEEEecccccccCCCCcccccccccC
Confidence 8888887765 55799999999998885542 2345788888 4 8887 566663 34
Q ss_pred CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeE-EEEeCCCCC
Q 048801 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFA-RVWSACKSS 430 (1715)
Q Consensus 352 GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~I-rVWDl~t~~ 430 (1715)
+.|.++|..+.+...++.... ....++++|+|+++++.+.+..- ...+..+
T Consensus 175 ~~vtvID~~t~~v~~qI~Vgg--------------------------~pd~~~~spdGk~~~vt~~~se~~~~i~~~~-- 226 (595)
T 1fwx_A 175 NVFTAVDADKWEVAWQVLVSG--------------------------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMT-- 226 (595)
T ss_dssp EEEEEEETTTTEEEEEEEESS--------------------------CCCCEEECSSSSEEEEEESCTTCCSSHHHHT--
T ss_pred ceEEEEECCCCeEEEEEEeCC--------------------------CccceEECCCCCEEEEEecCcccCcchhhcc--
Confidence 678899998877666654422 12457799999998888765310 0000000
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
......+.+-.-. ........ ++.... +.|.+.|..+.+.
T Consensus 227 -----------------~~~~d~v~V~~~~-----~~~~~v~~------------Gk~~~i----~~V~VID~~~~~~-- 266 (595)
T 1fwx_A 227 -----------------AAEMDHIVVFNIA-----EIEKAIAA------------GDYQEL----NGVKVVDGRKEAS-- 266 (595)
T ss_dssp -----------------CCSEEEEEEEEHH-----HHHHHHHH------------TCSEEE----TTEEEEECSGGGC--
T ss_pred -----------------ccccceEEEeecc-----ceeEeccC------------CCeeEE----CcEEEEeCcccCC--
Confidence 0111111110000 00000000 011111 4588888876210
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCc-----------
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGS----------- 578 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~----------- 578 (1715)
........-.....++.++|||+++++++ .+.+|.++|+.+.+
T Consensus 267 -------------------------~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 267 -------------------------SLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp -------------------------CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred -------------------------ceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 00000111123457799999999887765 57799999998653
Q ss_pred -eEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC----------CceEEEEEcccceE--E---EEEEcCCC
Q 048801 579 -LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE----------GTPIRIYEIGRFKL--V---DGKFSPDG 642 (1715)
Q Consensus 579 -~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t----------gk~l~tl~~h~~~V--~---svafSPDG 642 (1715)
.+..+. -......++|+|++ ...++...|+.|.+||+.+ ...+..+..|..+- . .+.++|||
T Consensus 322 ~v~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG 399 (595)
T 1fwx_A 322 AVVAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN 399 (595)
T ss_dssp GEEECCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS
T ss_pred ceEEEcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC
Confidence 233333 23446899999955 7777788899999999977 56778887665432 1 23568999
Q ss_pred CEEEEEeC
Q 048801 643 TSIVLSDD 650 (1715)
Q Consensus 643 ~~LAsgs~ 650 (1715)
++|+++..
T Consensus 400 k~l~~~Nk 407 (595)
T 1fwx_A 400 DWLVCLSK 407 (595)
T ss_dssp SEEEEEES
T ss_pred CEEEEcCC
Confidence 99998743
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=3.2e-06 Score=110.61 Aligned_cols=297 Identities=11% Similarity=0.128 Sum_probs=168.1
Q ss_pred CCEEEEEeCCCeeEEEECCCCCceEEEeCCCCC----------e-EEEEecCCCCcceEEEEecCCCcEEEEecCCCCCc
Q 048801 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGA----------V-TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365 (1715)
Q Consensus 297 g~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~----------V-tsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l 365 (1715)
+..|++++.++.|..+|..+|+.+..+...... + ..+++. +. .|+.++.|+.|..+|..+|+.+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~v~v~~~dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GD---KVYVGTLDGRLIALDAKTGKAI 140 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BT---EEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE--CC---EEEEEcCCCEEEEEECCCCCEe
Confidence 456777778899999999999998887533211 0 112222 22 6788889999999999999987
Q ss_pred ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC------CCeEEEEeCCCCCccCCCCCc-
Q 048801 366 PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS------DTFARVWSACKSSVEDSEQPI- 438 (1715)
Q Consensus 366 ~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~------DG~IrVWDl~t~~~~~~~~~~- 438 (1715)
............ ......+ + .++ .++++.. +|.|..||..+++........
T Consensus 141 W~~~~~~~~~~~----------------~~~~~P~--v---~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~ 198 (668)
T 1kv9_A 141 WSQQTTDPAKPY----------------SITGAPR--V---VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVP 198 (668)
T ss_dssp EEEECSCTTSSC----------------BCCSCCE--E---ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSC
T ss_pred eeeccCCCCCcc----------------eecCCCE--E---ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccC
Confidence 765442111000 0001111 1 144 3444432 589999999887642111000
Q ss_pred -eeeee------------e--------cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC-
Q 048801 439 -HELDV------------L--------SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG- 496 (1715)
Q Consensus 439 -~~l~~------------l--------~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG- 496 (1715)
..... . .++......+++.+. .+.++.++.++
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~--------------------------~~~vy~~~~~g~ 252 (668)
T 1kv9_A 199 GDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPE--------------------------LDLLYVGTGNGS 252 (668)
T ss_dssp CCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETT--------------------------TTEEEEECCCEE
T ss_pred CCCCccccccccccccccCCccceeeeCCCCccccceEEcCC--------------------------CCEEEEeCCCCC
Confidence 00000 0 000000111222222 24566666555
Q ss_pred ------------------eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC
Q 048801 497 ------------------SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558 (1715)
Q Consensus 497 ------------------sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~ 558 (1715)
.|..+|..+++..-.. ... .. ..... .....+....+..+|+
T Consensus 253 ~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~-----~~~----~~----------~~wd~-~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 253 PWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHY-----QVT----PG----------DSWDF-TATQQITLAELNIDGK 312 (668)
T ss_dssp SSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE-----ESS----TT----------CCSCC-CCCSCEEEEEEEETTE
T ss_pred ccccCCCCCCCCCceeeeeEEEEcCCCCceeeEe-----ecC----CC----------ccccc-cCCCCcEEEEeccCCc
Confidence 3888888887633221 100 00 00000 0011222222334665
Q ss_pred ---EEEEEecCCeEEEEECCCCceEEEEecCCC------------Ce------------------------EEEEEccCC
Q 048801 559 ---FVLAAIMDCRICVWNAVDGSLVHSLTGHSA------------SS------------------------YVLDVHPFN 599 (1715)
Q Consensus 559 ---~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~------------~V------------------------~sLafSP~d 599 (1715)
.|++++.+|.++++|..+|+++........ ++ ..++++|..
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 688899999999999999998855432110 00 125677744
Q ss_pred CcEEEEE-----------------------------------eCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCE
Q 048801 600 PRIAMSA-----------------------------------GYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTS 644 (1715)
Q Consensus 600 g~lLaSg-----------------------------------s~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~ 644 (1715)
+.+++.. ..+|.|..||+.+|+.+..+..+. ++....+...|.+
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~ 471 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNL 471 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTE
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCE
Confidence 4433311 134889999999999998877432 3344455667889
Q ss_pred EEEEeCCCeEEEEECCCCccccc
Q 048801 645 IVLSDDVGQIYLLNTGQGESQKD 667 (1715)
Q Consensus 645 LAsgs~DG~I~IWdl~tGe~~k~ 667 (1715)
|++++.||.|++||..+|+.+..
T Consensus 472 vf~g~~dg~l~a~d~~tG~~l~~ 494 (668)
T 1kv9_A 472 VFQGTAAGQMHAYSADKGEALWQ 494 (668)
T ss_dssp EEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEECCcccchhhhhhcChhheE
Confidence 99999999999999999987643
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.2e-08 Score=119.05 Aligned_cols=186 Identities=12% Similarity=0.065 Sum_probs=100.4
Q ss_pred CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCc
Q 048801 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHD 487 (1715)
Q Consensus 408 dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~ 487 (1715)
++..|++++.||.|+.||..+++. +..+.. +.+.+..+..+ +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~---------~W~~~~--~~~~s~p~~~~--------------------------g~ 50 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI---------KWTLKE--DPVLQVPTHVE--------------------------EP 50 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE---------EEEEEC--CCSCCCC-------------------------------C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE---------EEEecC--CCceecceEcC--------------------------CC
Confidence 567888999999999999988653 223322 23322222222 24
Q ss_pred eEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC
Q 048801 488 NIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC 567 (1715)
Q Consensus 488 ~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG 567 (1715)
.+++++.||.|..||..+++..... .+.. .... ...+ ++. ++..|++|+.++
T Consensus 51 ~~v~~s~dg~l~a~d~~tG~~~w~~-----~~~~-----------------~~~~-~~sp----~~~-~~~~v~~g~~dg 102 (369)
T 2hz6_A 51 AFLPDPNDGSLYTLGSKNNEGLTKL-----PFTI-----------------PELV-QASP----CRS-SDGILYMGKKQD 102 (369)
T ss_dssp CEEECTTTCCEEEC-----CCSEEC-----SCCH-----------------HHHH-TTCS----CC------CCCCEEEE
T ss_pred EEEEeCCCCEEEEEECCCCceeeee-----eccC-----------------cccc-ccCc----eEe-cCCEEEEEeCCC
Confidence 6777889999999999876532211 0000 0000 0000 111 344677788899
Q ss_pred eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCC---CE
Q 048801 568 RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDG---TS 644 (1715)
Q Consensus 568 tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG---~~ 644 (1715)
.|+.||..+|+.+..+..+. .+.++| ++..+++++.||.|+.||..+|+.+..+..+ .....+++.++ ..
T Consensus 103 ~v~a~D~~tG~~~w~~~~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~--~~~~~~~~~~~~~~~~ 175 (369)
T 2hz6_A 103 IWYVIDLLTGEKQQTLSSAF----ADSLSP-STSLLYLGRTEYTITMYDTKTRELRWNATYF--DYAASLPEDDVDYKMS 175 (369)
T ss_dssp EEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE--EECCBCCCCCTTCCCC
T ss_pred EEEEEECCCCcEEEEecCCC----cccccc-cCCEEEEEecCCEEEEEECCCCCEEEeEecc--cccCccccCCccccce
Confidence 99999999999998887654 234567 5567778889999999999999988776532 12233445543 56
Q ss_pred EEEEeCCCeEEEEECCCCccc
Q 048801 645 IVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 645 LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
+++++.+|.|+.||..+|+.+
T Consensus 176 v~~~~~dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 176 HFVSNGDGLVVTVDSESGDVL 196 (369)
T ss_dssp EEEEETSCEEEEECTTTCCEE
T ss_pred EEEECCCCEEEEEECCCCcEE
Confidence 777889999999999999764
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=4.1e-05 Score=98.68 Aligned_cols=352 Identities=11% Similarity=0.031 Sum_probs=183.9
Q ss_pred CCEEEEEeC-CCcEEEEeC-CCCcEEEEecCCCCC-----------eEEEEECCCCCE----EEEEeCCCeeEEEECCCC
Q 048801 255 GRFVITGSD-DRLVKIWSM-ETAFCLASCRGHEGD-----------ITDLAVSSNNTL----VASASNDFVIRVWRLPDG 317 (1715)
Q Consensus 255 G~~LaTGS~-DGtIrIWDl-~tgk~l~tL~gHs~~-----------VtsLafSpDg~l----LASGS~DGtIrVWDl~tg 317 (1715)
+..|++++. ++.|.-+|. .+|+.+-.+...... ...++++|.+.. |+.++.|+.|..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456777777 899999999 899998877533211 123456443434 888889999999999999
Q ss_pred CceEEEeCCC----CCeEE-EEecCCCCcceEEEEec------CCCcEEEEecCCCCCcceecCCCCCCCc-cCc----c
Q 048801 318 LPISVLRGHT----GAVTA-IAFSPRPSAIYQLLSSS------DDGTCRIWDARYSQYSPRIYLPKPPDAI-TGK----S 381 (1715)
Q Consensus 318 ~~l~~L~gH~----~~Vts-LafSPdg~~~~~LaSgS------~DGtVrIWDl~tg~~l~~i~~~~~~~~i-~g~----~ 381 (1715)
+.+....... ..+++ ..+. ++ .+++++ .+|.|+.+|..+|+.+..+....+.... .+. .
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g----~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~ 216 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-KD----KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT----EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred CEEEeecCCCCCccceeecCCEEE-CC----EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence 9987765322 01221 1111 33 455544 4899999999999987766543221000 000 0
Q ss_pred C---------CCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC----------------CeEEEEeCCCCCccCCCC
Q 048801 382 N---------VPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD----------------TFARVWSACKSSVEDSEQ 436 (1715)
Q Consensus 382 ~---------~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D----------------G~IrVWDl~t~~~~~~~~ 436 (1715)
. ...-...... ......-..+++.+...++..++.+ +.|..+|..+++....
T Consensus 217 ~~~~g~~~~g~~tw~g~~~~-~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~-- 293 (599)
T 1w6s_A 217 NPHYGQKGLGTGTWEGDAWK-IGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFG-- 293 (599)
T ss_dssp CGGGCCTTHHHHTSSTTGGG-GCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEE--
T ss_pred cccccccccccccCCCccee-cCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeE--
Confidence 0 0000000000 0000111245666776677766654 3677888877653110
Q ss_pred CceeeeeecCCC--------CCeeEEEEc-cCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCc
Q 048801 437 PIHELDVLSGHE--------NDVNYVQFS-GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 507 (1715)
Q Consensus 437 ~~~~l~~l~gH~--------~~V~sLafs-pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~ 507 (1715)
.....|. .++. +... .++. ....++.++.+|.+.++|..+++
T Consensus 294 -----~q~~~~d~wd~d~~~~p~l-~d~~~~~G~-----------------------~~~~v~~~~~~G~l~~lD~~tG~ 344 (599)
T 1w6s_A 294 -----YQKTPHDEWDYAGVNVMML-SEQKDKDGK-----------------------ARKLLTHPDRNGIVYTLDRTDGA 344 (599)
T ss_dssp -----EESSTTCSSCCCCCCCCEE-EEEECTTSC-----------------------EEEEEEEECTTSEEEEEETTTCC
T ss_pred -----eecCCCccccccCCCccEE-EeccccCCc-----------------------EEEEEEEECCCcEEEEEECCCCC
Confidence 1111121 1111 0000 1110 00467778999999999999887
Q ss_pred cCcccc-----cccccccccCCCCCCC---CC-CCCCCCcccccCCC--CCeeEEEeCCCCCEEEEEe------------
Q 048801 508 SHGKVG-----RWTRAYHLKVPPPPLP---PQ-PPRGGPRQRLLPTP--RGVNMIVWSLDNRFVLAAI------------ 564 (1715)
Q Consensus 508 ~~~~~~-----~~~~~~~l~~~~~~~~---~~-~~~g~~~~~l~~h~--~~VtslafSPDG~~LaTgs------------ 564 (1715)
.+.... .|.....+.. ..+.. .. ...........+.. ..-..++++|+..+|++..
T Consensus 345 ~lw~~~~~~~~~~~~~~~~~~-g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~ 423 (599)
T 1w6s_A 345 LVSANKLDDTVNVFKSVDLKT-GQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFML 423 (599)
T ss_dssp EEEEEESSTTCCSEEEECTTT-CCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCC
T ss_pred EeecccccCCcccccccccCC-CceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccc
Confidence 543321 0111010000 00000 00 00000000000000 1122456666655554421
Q ss_pred ---------------------------cCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 565 ---------------------------MDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 565 ---------------------------~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
..|.|..||+.+|+.+....... ++..-.+.. .+.+++.++.||.|+.||.
T Consensus 424 ~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agg~vf~gt~dg~l~A~D~ 501 (599)
T 1w6s_A 424 PYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF-AVWGGTMAT-AGDLVFYGTLDGYLKARDS 501 (599)
T ss_dssp CCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEET
T ss_pred cccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC-CccCcceEe-cCCEEEEECCCCeEEEEEC
Confidence 34789999999999988775221 111111112 3445566899999999999
Q ss_pred CCCceEEEEEcccceE-EEEEEcCCCCEEE
Q 048801 618 WEGTPIRIYEIGRFKL-VDGKFSPDGTSIV 646 (1715)
Q Consensus 618 ~tgk~l~tl~~h~~~V-~svafSPDG~~LA 646 (1715)
.+|+.+..+......+ .-+.+..+|++.+
T Consensus 502 ~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv 531 (599)
T 1w6s_A 502 DTGDLLWKFKIPSGAIGYPMTYTHKGTQYV 531 (599)
T ss_dssp TTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCCCEEEEeeCCCCcEeccEEEEeCCEEEE
Confidence 9999999998544322 2355667887544
|
| >3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.4e-07 Score=94.78 Aligned_cols=67 Identities=21% Similarity=0.349 Sum_probs=62.2
Q ss_pred ccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHhhc
Q 048801 1646 LDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1646 ~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
++|.. ..|+++.+||+||++.-|++++.++.|+..||.||++||.++|.|-.-|..|.+.|.++..+
T Consensus 42 pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NAr~yN~e~S~IyeDAv~Lq~~f~~~r~e 108 (147)
T 3iu6_A 42 PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDE 108 (147)
T ss_dssp TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45655 78999999999999999999999999999999999999999999999999999999987654
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.4e-05 Score=100.53 Aligned_cols=351 Identities=10% Similarity=0.029 Sum_probs=183.0
Q ss_pred CCEEEEEeC-CCcEEEEeC-CCCcEEEEecCCCC-C---------e-EEEEECCCCCEEEEEeCCCeeEEEECCCCCceE
Q 048801 255 GRFVITGSD-DRLVKIWSM-ETAFCLASCRGHEG-D---------I-TDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS 321 (1715)
Q Consensus 255 G~~LaTGS~-DGtIrIWDl-~tgk~l~tL~gHs~-~---------V-tsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~ 321 (1715)
+..|+.++. ++.|.-+|. .+|+.+-.+..... . + ..+++ ++..|+.++.|+.|..+|..+|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 456667777 899999999 89999877653221 0 0 11233 35678888899999999999999987
Q ss_pred EEeCCC----CCeEE-EEecCCCCcceEEEEecC------CCcEEEEecCCCCCcceecCCCCCCCc-cCccCC----C-
Q 048801 322 VLRGHT----GAVTA-IAFSPRPSAIYQLLSSSD------DGTCRIWDARYSQYSPRIYLPKPPDAI-TGKSNV----P- 384 (1715)
Q Consensus 322 ~L~gH~----~~Vts-LafSPdg~~~~~LaSgS~------DGtVrIWDl~tg~~l~~i~~~~~~~~i-~g~~~~----~- 384 (1715)
...... ..+.+ ..+. ++ .+++++. +|.|..+|..+|+.+.++....+.... .+.... .
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~g----~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~ 214 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-KD----TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHY 214 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-TT----EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred EecCCCCCccceeccCCEEE-CC----EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccc
Confidence 765321 01211 1111 33 4455443 799999999999987766543221000 000000 0
Q ss_pred --------CCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC----------------CeEEEEeCCCCCccCCCCCcee
Q 048801 385 --------SNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD----------------TFARVWSACKSSVEDSEQPIHE 440 (1715)
Q Consensus 385 --------~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D----------------G~IrVWDl~t~~~~~~~~~~~~ 440 (1715)
.-..... ..........+++.++...+..++.+ +.|..+|..+++....
T Consensus 215 G~~~~g~~~w~~~~~-~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~------ 287 (571)
T 2ad6_A 215 GQFGLGTKTWEGDAW-KIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWG------ 287 (571)
T ss_dssp CCSSHHHHTSSTTGG-GGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEE------
T ss_pred cccccccccCcccce-ecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEE------
Confidence 0000000 00000111235666665555555432 3578888877643110
Q ss_pred eeeecCCC--------CCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccc
Q 048801 441 LDVLSGHE--------NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKV 512 (1715)
Q Consensus 441 l~~l~gH~--------~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~ 512 (1715)
.....|. .++. +....++. ....++.++.+|.+.++|..+++.+...
T Consensus 288 -~~~~~~d~~d~~~~~~p~l-~~~~~~G~-----------------------~~~~v~~~~~~G~l~~lD~~tG~~~w~~ 342 (571)
T 2ad6_A 288 -YQKTPHDEWDFAGVNQMVL-TDQPVNGK-----------------------MTPLLSHIDRNGILYTLNRENGNLIVAE 342 (571)
T ss_dssp -EESSTTCSSCCCCCCCCEE-EEEEETTE-----------------------EEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred -ecCCCCcccccccCCCCEE-EecccCCc-----------------------EEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence 0111111 1111 00001110 0035778889999999999988754322
Q ss_pred c-----cccccccccCCCCCCCC---CC-CCCCCcccccCCCC--CeeEEEeCCCCCEEEEEe-----------------
Q 048801 513 G-----RWTRAYHLKVPPPPLPP---QP-PRGGPRQRLLPTPR--GVNMIVWSLDNRFVLAAI----------------- 564 (1715)
Q Consensus 513 ~-----~~~~~~~l~~~~~~~~~---~~-~~g~~~~~l~~h~~--~VtslafSPDG~~LaTgs----------------- 564 (1715)
. .|.....+.. ..+... .+ .............+ .-..++++|+..+|++.+
T Consensus 343 ~~~~~~~w~~~~d~~~-g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g 421 (571)
T 2ad6_A 343 KVDPAVNVFKKVDLKT-GTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAG 421 (571)
T ss_dssp ESSTTCCSEEEECTTT-CSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTT
T ss_pred cccCCccccccccccC-CceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccC
Confidence 1 1111110000 000000 00 00000000000000 113567888877776654
Q ss_pred --------------------cCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEE
Q 048801 565 --------------------MDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIR 624 (1715)
Q Consensus 565 --------------------~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~ 624 (1715)
.+|.|..||+.+|+.+..+.... .+.+..+...+ .+++.++.||.|++||..+|+.+.
T Consensus 422 ~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 422 QFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKG-GLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp SCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETT-TEEEEECTTSEEEEEETTTCCEEE
T ss_pred CccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECC-CEEEEEcCCCeEEEEECCCCCEEE
Confidence 34789999999999988876432 22222222224 455568899999999999999999
Q ss_pred EEEcccceE-EEEEEcCCCCEEEE
Q 048801 625 IYEIGRFKL-VDGKFSPDGTSIVL 647 (1715)
Q Consensus 625 tl~~h~~~V-~svafSPDG~~LAs 647 (1715)
.+....... ..+.+..+|+.++.
T Consensus 500 ~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 500 NFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEeCCCCcEeeeEEEEECCEEEEE
Confidence 998543221 12345567765543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00014 Score=93.67 Aligned_cols=357 Identities=13% Similarity=0.052 Sum_probs=184.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCe---------EEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeC
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI---------TDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRG 325 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~V---------tsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~g 325 (1715)
+..|+.++.++.|..+|..+|+.+-.+....... ..+++ .+..|+.++.|+.|..+|..+|+.+.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 3455556654459999999999988775432210 11222 355788888999999999999999877653
Q ss_pred CCC----CeE-EEEecCC---CCcceEEEEec------CCCcEEEEecCCCCCcceecCCCCCCC-----------ccCc
Q 048801 326 HTG----AVT-AIAFSPR---PSAIYQLLSSS------DDGTCRIWDARYSQYSPRIYLPKPPDA-----------ITGK 380 (1715)
Q Consensus 326 H~~----~Vt-sLafSPd---g~~~~~LaSgS------~DGtVrIWDl~tg~~l~~i~~~~~~~~-----------i~g~ 380 (1715)
... .+. ...+..+ +.. .+++++ .+|.|..+|..+|+.+........... ..+.
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~--~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~ 223 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKV--LLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA 223 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCE--EEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred CCCCcCcccccCCEEeCCCcCCcE--EEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence 321 111 1111122 211 344443 378999999999987765432110000 0000
Q ss_pred cCCCCC----CCCC-CCCCCCCcceeEEEEccCCCeEEEecC--------------------C----CeEEEEeCCCCCc
Q 048801 381 SNVPSN----NGPS-SSNGLQSHQILCCAYNANGTVFVTGSS--------------------D----TFARVWSACKSSV 431 (1715)
Q Consensus 381 ~~~~~~----~~~~-~~~~~h~~~VtslafSpdG~~LatGs~--------------------D----G~IrVWDl~t~~~ 431 (1715)
...... .... .........-..+++.|+..++.+++. | +.|..+|..+++.
T Consensus 224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 000000 0000 000001111235677777766665553 2 5788888877653
Q ss_pred cCCCCCceeeeeecCCCCC----eeE-EEEc---cCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEec
Q 048801 432 EDSEQPIHELDVLSGHEND----VNY-VQFS---GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIP 503 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~~~----V~s-Lafs---pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl 503 (1715)
... .....|... +.. +.+. .++. ....++.++.+|.+.++|.
T Consensus 304 ~W~-------~q~~~~d~wd~~~~~~p~l~~~~~~~G~-----------------------~~~~v~~~~~~G~l~~lD~ 353 (582)
T 1flg_A 304 KWF-------YQHTPNDAWDFSGNNELVLFDYKAKDGK-----------------------IVKATAHADRNGFFYVVDR 353 (582)
T ss_dssp EEE-------EESSTTCCSCCCCCCCCEEEEEECSSSC-----------------------EEEEEEEECTTSEEEEEET
T ss_pred EEE-------EeCCCCCcccccCCCCcEEEeeecCCCC-----------------------EEEEEEEECCCceEEEEEC
Confidence 111 111112110 000 0011 1110 0036888999999999999
Q ss_pred CCCccCccccc-----ccccccccCCCC----CCCCC-----CCCCCCcccccCCCC--CeeEEEeCCCCCEEEEEe---
Q 048801 504 RSRRSHGKVGR-----WTRAYHLKVPPP----PLPPQ-----PPRGGPRQRLLPTPR--GVNMIVWSLDNRFVLAAI--- 564 (1715)
Q Consensus 504 ~t~~~~~~~~~-----~~~~~~l~~~~~----~~~~~-----~~~g~~~~~l~~h~~--~VtslafSPDG~~LaTgs--- 564 (1715)
.+++.+..... |.....+....+ ..... ..............+ .-..++++|+..++++..
T Consensus 354 ~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~ 433 (582)
T 1flg_A 354 SNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHW 433 (582)
T ss_dssp TTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECE
T ss_pred CCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhc
Confidence 99875533211 111111000000 00000 000000000111111 123467777665555433
Q ss_pred ------------------------------cCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEE
Q 048801 565 ------------------------------MDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIV 614 (1715)
Q Consensus 565 ------------------------------~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~V 614 (1715)
.+|.|..||+.+|+.+.....+.. +..-.+.. .+.+++.|+.||.|+.
T Consensus 434 ~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~g~~dg~l~A 511 (582)
T 1flg_A 434 KEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKA 511 (582)
T ss_dssp EEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEE
T ss_pred ceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC-CcccceEe-CCCEEEEECCCCcEEE
Confidence 257899999999999887764322 21111112 2446667899999999
Q ss_pred EECCCCceEEEEEcccceEE-EEEEcCCCCEEEE
Q 048801 615 WDIWEGTPIRIYEIGRFKLV-DGKFSPDGTSIVL 647 (1715)
Q Consensus 615 WDl~tgk~l~tl~~h~~~V~-svafSPDG~~LAs 647 (1715)
||..+|+.+..+....+.+. -+.|..+|++.++
T Consensus 512 ~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 512 FDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EECCCCCEEEEecCCCCcccCceEEEECCEEEEE
Confidence 99999999999986543221 2567788875443
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.5e-05 Score=95.83 Aligned_cols=197 Identities=11% Similarity=0.001 Sum_probs=129.0
Q ss_pred CCCCEEEEEe-CCCcEEEEeCCCC----cEEEEec-------CCCCCeEEEEECCCCCEEEEEeCC------CeeEEEEC
Q 048801 253 RSGRFVITGS-DDRLVKIWSMETA----FCLASCR-------GHEGDITDLAVSSNNTLVASASND------FVIRVWRL 314 (1715)
Q Consensus 253 pDG~~LaTGS-~DGtIrIWDl~tg----k~l~tL~-------gHs~~VtsLafSpDg~lLASGS~D------GtIrVWDl 314 (1715)
.++++|+..+ .++.|.|+|+.+. +..+++. .....-..+..+|+| +++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 6788776654 6789999999765 6677663 112245667889999 77766555 78999999
Q ss_pred CCCCceEEEeCCC---CCeEEEEecCCCCcceEEEEec-------------------CCCcEEEEecCCCCCcceecCCC
Q 048801 315 PDGLPISVLRGHT---GAVTAIAFSPRPSAIYQLLSSS-------------------DDGTCRIWDARYSQYSPRIYLPK 372 (1715)
Q Consensus 315 ~tg~~l~~L~gH~---~~VtsLafSPdg~~~~~LaSgS-------------------~DGtVrIWDl~tg~~l~~i~~~~ 372 (1715)
.+++.+..+.... .--+.+.|+|+++ .+++.. .+.+|.+||+.+++.+.++.+..
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~---~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~ 248 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNE---VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE 248 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTT---EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCC---EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence 9999999886322 2235688899988 677764 37899999999877666654421
Q ss_pred CCCCccCccCCCCCCCCCCCCCCCCcceeEEEE--ccCCCeEEEec------CCCeEEEEeCCCCCccCCCCCceeee--
Q 048801 373 PPDAITGKSNVPSNNGPSSSNGLQSHQILCCAY--NANGTVFVTGS------SDTFARVWSACKSSVEDSEQPIHELD-- 442 (1715)
Q Consensus 373 ~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtslaf--SpdG~~LatGs------~DG~IrVWDl~t~~~~~~~~~~~~l~-- 442 (1715)
. ......+.| +|+|+++.+++ .++.|.+|....+.. .....+.
T Consensus 249 ~-----------------------g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~----~~~~vIdi~ 301 (462)
T 2ece_A 249 E-----------------------NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW----NAEKVIEIP 301 (462)
T ss_dssp T-----------------------EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE----EEEEEEEEC
T ss_pred C-----------------------CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce----eEEEEEeCC
Confidence 0 122345555 99999877776 456887766643221 0000000
Q ss_pred ------ee---c----CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC
Q 048801 443 ------VL---S----GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 505 (1715)
Q Consensus 443 ------~l---~----gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t 505 (1715)
.+ . +-......|.+++++ ..+.++.-..+.|.+||+..
T Consensus 302 ~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG-------------------------rfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 302 AEPLEGNLPEILKPFKAVPPLVTDIDISLDD-------------------------KFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp CEECCSSCCGGGGGGTEECCCCCCEEECTTS-------------------------CEEEEEETTTTEEEEEECSS
T ss_pred CccccccccccccccccCCCceeEEEECCCC-------------------------CEEEEEeCCCCEEEEEEecC
Confidence 00 0 002346677788876 23556666789999999863
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00019 Score=81.98 Aligned_cols=249 Identities=10% Similarity=-0.012 Sum_probs=147.5
Q ss_pred CEEEEEeCCCcEEEEeCCCCcE-----EEEecCCCCCeEEEEECCCCCEEEEE-eCCCeeEEEECCCCCceEEEeCCCCC
Q 048801 256 RFVITGSDDRLVKIWSMETAFC-----LASCRGHEGDITDLAVSSNNTLVASA-SNDFVIRVWRLPDGLPISVLRGHTGA 329 (1715)
Q Consensus 256 ~~LaTGS~DGtIrIWDl~tgk~-----l~tL~gHs~~VtsLafSpDg~lLASG-S~DGtIrVWDl~tg~~l~~L~gH~~~ 329 (1715)
.+|+.+.. +.|+.+++..... ...+......+.+++|++++..|+.+ ...+.|.++++..+.....+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 45555543 4788888875432 11222223457899999976555544 45789999998766544444333357
Q ss_pred eEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC
Q 048801 330 VTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG 409 (1715)
Q Consensus 330 VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG 409 (1715)
..+|++.+++.. .+++....+.|.++++.... ...+.. ........++++|++
T Consensus 81 p~~ia~d~~~~~--lyv~d~~~~~I~~~~~~g~~-~~~~~~------------------------~~~~~P~~i~vd~~~ 133 (267)
T 1npe_A 81 PEGIALDHLGRT--IFWTDSQLDRIEVAKMDGTQ-RRVLFD------------------------TGLVNPRGIVTDPVR 133 (267)
T ss_dssp EEEEEEETTTTE--EEEEETTTTEEEEEETTSCS-CEEEEC------------------------SSCSSEEEEEEETTT
T ss_pred ccEEEEEecCCe--EEEEECCCCEEEEEEcCCCC-EEEEEE------------------------CCCCCccEEEEeeCC
Confidence 899999997652 44555667889999886432 111100 001235789999965
Q ss_pred CeE-EEecC--CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccC
Q 048801 410 TVF-VTGSS--DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCH 486 (1715)
Q Consensus 410 ~~L-atGs~--DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~ 486 (1715)
..| ++... .+.|..+++.... ...+ ..........+++++++ .
T Consensus 134 g~lyv~~~~~~~~~I~~~~~dg~~-------~~~~--~~~~~~~P~gia~d~~~-------------------------~ 179 (267)
T 1npe_A 134 GNLYWTDWNRDNPKIETSHMDGTN-------RRIL--AQDNLGLPNGLTFDAFS-------------------------S 179 (267)
T ss_dssp TEEEEEECCSSSCEEEEEETTSCC-------CEEE--ECTTCSCEEEEEEETTT-------------------------T
T ss_pred CEEEEEECCCCCcEEEEEecCCCC-------cEEE--EECCCCCCcEEEEcCCC-------------------------C
Confidence 544 44433 4688888875321 1111 11222356788888864 2
Q ss_pred ceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC
Q 048801 487 DNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD 566 (1715)
Q Consensus 487 ~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D 566 (1715)
..+++....+.|.++++.+..... . .. .......+++. .+.++++....
T Consensus 180 ~lyv~d~~~~~I~~~~~~g~~~~~--------~---------------------~~-~~~~P~gi~~d-~~~lyva~~~~ 228 (267)
T 1npe_A 180 QLCWVDAGTHRAECLNPAQPGRRK--------V---------------------LE-GLQYPFAVTSY-GKNLYYTDWKT 228 (267)
T ss_dssp EEEEEETTTTEEEEEETTEEEEEE--------E---------------------EE-CCCSEEEEEEE-TTEEEEEETTT
T ss_pred EEEEEECCCCEEEEEecCCCceEE--------E---------------------ec-CCCCceEEEEe-CCEEEEEECCC
Confidence 456677777899999887422100 0 00 01122455554 34444444456
Q ss_pred CeEEEEECCCCceEEEEecCC-CCeEEEEEcc
Q 048801 567 CRICVWNAVDGSLVHSLTGHS-ASSYVLDVHP 597 (1715)
Q Consensus 567 GtI~IWDl~sg~~l~tL~gH~-~~V~sLafSP 597 (1715)
+.|.++|..+++.+..+.... .....|++.|
T Consensus 229 ~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~ 260 (267)
T 1npe_A 229 NSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (267)
T ss_dssp TEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred CeEEEEeCCCCCceEEEccccccccceeeecC
Confidence 899999999999988886433 2356777777
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00014 Score=89.19 Aligned_cols=234 Identities=11% Similarity=0.076 Sum_probs=136.8
Q ss_pred CCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec
Q 048801 337 PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS 416 (1715)
Q Consensus 337 Pdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs 416 (1715)
++.+ ++++++..++.|.++|+.+......+.....+..+.. ......-..+.++|+| +++++.
T Consensus 93 ~~r~--~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~--------------~~g~s~Ph~~~~~pdG-i~Vs~~ 155 (462)
T 2ece_A 93 IERR--FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKK--------------VSGYSRLHTVHCGPDA-IYISAL 155 (462)
T ss_dssp CCSC--EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHH--------------HHCEEEEEEEEECSSC-EEEEEE
T ss_pred ccCC--EEEEccCCCCeEEEEECCCCCCCceeeeeechhhccc--------------ccCCCcccceeECCCe-EEEEcC
Confidence 5555 3677888899999999875521111110000000000 0001124567788999 666655
Q ss_pred CC------CeEEEEeCCCCCccCCCCCceeeeeecC--CC-CCeeEEEEccCcccccccccccccccccccccCCcccCc
Q 048801 417 SD------TFARVWSACKSSVEDSEQPIHELDVLSG--HE-NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHD 487 (1715)
Q Consensus 417 ~D------G~IrVWDl~t~~~~~~~~~~~~l~~l~g--H~-~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~ 487 (1715)
.+ |.|.++|..+.++ +..+.. .. ..-..+.|+|++ +
T Consensus 156 g~~~g~~~g~v~vlD~~T~~v---------~~~~~~~~~~~~~~Yd~~~~p~~--------------------------~ 200 (462)
T 2ece_A 156 GNEEGEGPGGILMLDHYSFEP---------LGKWEIDRGDQYLAYDFWWNLPN--------------------------E 200 (462)
T ss_dssp EETTSCSCCEEEEECTTTCCE---------EEECCSBCTTCCCCCCEEEETTT--------------------------T
T ss_pred CCcCCCCCCeEEEEECCCCeE---------EEEEccCCCCccccceEEECCCC--------------------------C
Confidence 44 7899999987643 222221 11 122346667764 4
Q ss_pred eEEEEc-------------------CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCe
Q 048801 488 NIVTCS-------------------RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548 (1715)
Q Consensus 488 ~LaSgS-------------------~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V 548 (1715)
.+++.. .+.+|.+||+.+++....+ . +.......
T Consensus 201 ~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI---------~------------------vg~~g~~P 253 (462)
T 2ece_A 201 VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL---------T------------------LGEENRMA 253 (462)
T ss_dssp EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE---------E------------------SCTTEEEE
T ss_pred EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE---------e------------------cCCCCCcc
Confidence 555552 4789999999864322111 0 00011223
Q ss_pred eEEEe--CCCCCEEEEEe------cCCeEEEEECCCCce--EEEE--ecC----------------CCCeEEEEEccCCC
Q 048801 549 NMIVW--SLDNRFVLAAI------MDCRICVWNAVDGSL--VHSL--TGH----------------SASSYVLDVHPFNP 600 (1715)
Q Consensus 549 tslaf--SPDG~~LaTgs------~DGtI~IWDl~sg~~--l~tL--~gH----------------~~~V~sLafSP~dg 600 (1715)
..+.| +|+++++++++ .+++|.+|....|+. ...+ ... ......|.+|+++.
T Consensus 254 ~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGr 333 (462)
T 2ece_A 254 LELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDK 333 (462)
T ss_dssp EEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSC
T ss_pred ceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCC
Confidence 34444 99999988877 466888877655532 1111 110 23467899999665
Q ss_pred cEEEEEeCCCcEEEEECCC---CceEEEEEccc--------------ceEEEEEEcCCCCEEEEEe
Q 048801 601 RIAMSAGYDGRTIVWDIWE---GTPIRIYEIGR--------------FKLVDGKFSPDGTSIVLSD 649 (1715)
Q Consensus 601 ~lLaSgs~DGtI~VWDl~t---gk~l~tl~~h~--------------~~V~svafSPDG~~LAsgs 649 (1715)
.+.++.-..+.|.++|+.. .+.+..+..+. +.-..+++||||++|+++.
T Consensus 334 fLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 334 FLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 6666666788999999863 35666665431 1246889999999999887
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0001 Score=94.63 Aligned_cols=111 Identities=12% Similarity=0.071 Sum_probs=78.4
Q ss_pred CCCC---EEEEEecCCeEEEEECCCCceEEEEecCC-------------CCe--------------------------EE
Q 048801 555 LDNR---FVLAAIMDCRICVWNAVDGSLVHSLTGHS-------------ASS--------------------------YV 592 (1715)
Q Consensus 555 PDG~---~LaTgs~DGtI~IWDl~sg~~l~tL~gH~-------------~~V--------------------------~s 592 (1715)
.+|+ .|+.++.+|.|+++|..+|+.+..+.-.. .++ ..
T Consensus 311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~ 390 (571)
T 2ad6_A 311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV 390 (571)
T ss_dssp ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence 4774 67788899999999999999988765321 111 23
Q ss_pred EEEccCCCcEEEEEe------------------------------------CCCcEEEEECCCCceEEEEEcccceEEEE
Q 048801 593 LDVHPFNPRIAMSAG------------------------------------YDGRTIVWDIWEGTPIRIYEIGRFKLVDG 636 (1715)
Q Consensus 593 LafSP~dg~lLaSgs------------------------------------~DGtI~VWDl~tgk~l~tl~~h~~~V~sv 636 (1715)
++++|..+.+++... .+|.|..||+.+|+.+..+.... .+...
T Consensus 391 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~ 469 (571)
T 2ad6_A 391 DSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGG 469 (571)
T ss_dssp CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSB
T ss_pred ceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-Cccce
Confidence 567775444444321 35789999999999998887432 33333
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 637 KFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 637 afSPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
.+...+..|++++.||.|++||..+|+.+-
T Consensus 470 ~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 470 TLYTKGGLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp CEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred eEEECCCEEEEEcCCCeEEEEECCCCCEEE
Confidence 334456778889999999999999998763
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=8e-05 Score=86.07 Aligned_cols=214 Identities=9% Similarity=-0.032 Sum_probs=141.9
Q ss_pred cceeEEEEcCCCC--CeEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCcEEEEecCCCC-CeEEEEECCCCCEEEEEe-C
Q 048801 232 KMQNIKKLRGHRD--AVYCAIFDRSGRFVITGSD--DRLVKIWSMETAFCLASCRGHEG-DITDLAVSSNNTLVASAS-N 305 (1715)
Q Consensus 232 ~~k~l~~L~GH~~--~Vt~VafSpDG~~LaTGS~--DGtIrIWDl~tgk~l~tL~gHs~-~VtsLafSpDg~lLASGS-~ 305 (1715)
+.+.+.++. |.. ....++|++||.+.++.+. ++.|.+.|+.+++.+..+.-... ....+++. +..|+.+. .
T Consensus 8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 455666673 443 3689999998755555443 57999999999999988752221 22345554 44555554 5
Q ss_pred CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 306 DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 306 DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
++.|.++|..+++.+.++...... ...+++++. .|+++..++.|.++|..+.+....+.......
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~---~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~---------- 149 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGK---ILYGSDGTSILYEIDPHTFKLIKKHNVKYNGH---------- 149 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECCSSS--CCEEEECSS---SEEEECSSSEEEEECTTTCCEEEEEECEETTE----------
T ss_pred CCEEEEEECCCCcEEEEEECCCCC--eEEEEECCC---EEEEECCCCeEEEEECCCCcEEEEEEECCCCc----------
Confidence 789999999999999888632122 233556766 34444568899999999887766664421100
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee--e------c--CCCCCeeEEE
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV--L------S--GHENDVNYVQ 455 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~--l------~--gH~~~V~sLa 455 (1715)
.-..+..+.|. +|.+++....++.|.+.|..++++.. .+.. + . ......+.|+
T Consensus 150 ----------p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~------~I~~~g~~~~~~~~~~~~~~v~nGIa 212 (266)
T 2iwa_A 150 ----------RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLG------WILLPNLRKKLIDEGFRDIDVLNGIA 212 (266)
T ss_dssp ----------ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEE------EEECHHHHHHHHHTTCTTCCCEEEEE
T ss_pred ----------ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEE------EEECCCcccccccccccccCceEEEE
Confidence 01125677777 77777766678899999999876421 1111 0 0 0123568999
Q ss_pred EccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC
Q 048801 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 505 (1715)
Q Consensus 456 fspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t 505 (1715)
|++++ ...++++...+.|.+.++..
T Consensus 213 ~~~~~-------------------------~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 213 WDQEN-------------------------KRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EETTT-------------------------TEEEEEETTCSEEEEEEEEE
T ss_pred EcCCC-------------------------CEEEEECCCCCeEEEEEEec
Confidence 99986 46888898999999988764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00043 Score=79.05 Aligned_cols=201 Identities=9% Similarity=-0.031 Sum_probs=126.7
Q ss_pred ceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccc
Q 048801 399 QILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 399 ~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
.+..++|++++ .++++-...+.|.++++..... ...+.........+++++.+
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~---------~~~~~~~~~~p~~ia~d~~~----------------- 90 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP---------TTIIRQDLGSPEGIALDHLG----------------- 90 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---------EEEECTTCCCEEEEEEETTT-----------------
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc---------EEEEECCCCCccEEEEEecC-----------------
Confidence 46799999865 4555556678999999865321 11122222456788888754
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
...+++....+.|.++++...... . ...........++++|++
T Consensus 91 --------~~lyv~d~~~~~I~~~~~~g~~~~--------~---------------------~~~~~~~~P~~i~vd~~~ 133 (267)
T 1npe_A 91 --------RTIFWTDSQLDRIEVAKMDGTQRR--------V---------------------LFDTGLVNPRGIVTDPVR 133 (267)
T ss_dssp --------TEEEEEETTTTEEEEEETTSCSCE--------E---------------------EECSSCSSEEEEEEETTT
T ss_pred --------CeEEEEECCCCEEEEEEcCCCCEE--------E---------------------EEECCCCCccEEEEeeCC
Confidence 245666667788998887632100 0 000011346789999976
Q ss_pred CEEEEEec---CCeEEEEECCCCceEEEEe-cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceE
Q 048801 558 RFVLAAIM---DCRICVWNAVDGSLVHSLT-GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKL 633 (1715)
Q Consensus 558 ~~LaTgs~---DGtI~IWDl~sg~~l~tL~-gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V 633 (1715)
..|+.+.. .+.|.++++. +.....+. ........+++++++++++++-...+.|.++++........+... ...
T Consensus 134 g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~~P 211 (267)
T 1npe_A 134 GNLYWTDWNRDNPKIETSHMD-GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYP 211 (267)
T ss_dssp TEEEEEECCSSSCEEEEEETT-SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-CSE
T ss_pred CEEEEEECCCCCcEEEEEecC-CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC-CCc
Confidence 66655544 3688888875 33333332 333457899999966777777777889999999755444444322 223
Q ss_pred EEEEEcCCCCEEEEEe-CCCeEEEEECCCCcccc
Q 048801 634 VDGKFSPDGTSIVLSD-DVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 634 ~svafSPDG~~LAsgs-~DG~I~IWdl~tGe~~k 666 (1715)
..+++ ++..|.+++ ..+.|.+++..+|+...
T Consensus 212 ~gi~~--d~~~lyva~~~~~~v~~~d~~~g~~~~ 243 (267)
T 1npe_A 212 FAVTS--YGKNLYYTDWKTNSVIAMDLAISKEMD 243 (267)
T ss_dssp EEEEE--ETTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred eEEEE--eCCEEEEEECCCCeEEEEeCCCCCceE
Confidence 45555 355566555 56899999998887554
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=9.9e-05 Score=95.10 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=43.1
Q ss_pred CCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 608 YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 608 ~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
.+|.|..||+.+|+.+...... .++..-.+...|.+|++++.||.|+.||..+|+.+-
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW 508 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW 508 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEE
Confidence 3578999999999998887632 222222234467778889999999999999998763
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.20 E-value=6.7e-05 Score=86.04 Aligned_cols=199 Identities=10% Similarity=0.048 Sum_probs=126.5
Q ss_pred cceeEEEEcCCCCC--eEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEe-CC
Q 048801 232 KMQNIKKLRGHRDA--VYCAIFDRSGRFVITGSDDR--LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASAS-ND 306 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~--Vt~VafSpDG~~LaTGS~DG--tIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS-~D 306 (1715)
..+.++++ .|... ...+.|+ ++.+..+.+.+| .|+++|+.+++.+..+.-.. ......+.+++..|.... .+
T Consensus 30 ~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~ 106 (262)
T 3nol_A 30 DYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSS
T ss_pred ceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeC
Confidence 45667777 45443 4788998 677677777766 89999999999999886433 333333333455665555 47
Q ss_pred CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
+.+.+||..+.+.+.++.... ....+++++. .|+.+..++.|.++|..+.+.+..+.+.....
T Consensus 107 ~~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~---~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~----------- 169 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQ---YLIMSDGTPVLRFLDPESLTPVRTITVTAHGE----------- 169 (262)
T ss_dssp SEEEEEETTTCCEEEEEECSS---CCCCEEECSS---CEEECCSSSEEEEECTTTCSEEEEEECEETTE-----------
T ss_pred CEEEEEECccCcEEEEEECCC---CceEEecCCC---EEEEECCCCeEEEEcCCCCeEEEEEEeccCCc-----------
Confidence 899999999999999987432 2233335555 45555557889999999988777665421100
Q ss_pred CCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee---ecCCCCCeeEEEEccCc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV---LSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~---l~gH~~~V~sLafspdg 460 (1715)
.-..+..+.|. +|.++|..-.+..|.+.|..++++........+... ........+.|+|+|+.
T Consensus 170 ---------~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~ 236 (262)
T 3nol_A 170 ---------ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEH 236 (262)
T ss_dssp ---------ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTT
T ss_pred ---------cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCC
Confidence 01123456665 787777766788999999998765221111000000 01112456889999876
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00016 Score=83.63 Aligned_cols=194 Identities=8% Similarity=-0.041 Sum_probs=132.9
Q ss_pred eeEEEEccCCCeEEEecC--CCeEEEEeCCCCCccCCCCCceeeeeec-CCCCCeeEEEEccCccccccccccccccccc
Q 048801 400 ILCCAYNANGTVFVTGSS--DTFARVWSACKSSVEDSEQPIHELDVLS-GHENDVNYVQFSGCAVASRSAMSDAFKEENV 476 (1715)
Q Consensus 400 VtslafSpdG~~LatGs~--DG~IrVWDl~t~~~~~~~~~~~~l~~l~-gH~~~V~sLafspdg~as~~~~~~~~~~~~~ 476 (1715)
...++|++++.++++.+. ++.|+++|+.+++. +..+. +.......+++.+
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v---------~~~i~l~~~~fgeGi~~~g------------------ 75 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV---------ENIHKMDDSYFGEGLTLLN------------------ 75 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE---------EEEEECCTTCCEEEEEEET------------------
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE---------EEEEecCCCcceEEEEEeC------------------
Confidence 578999998866665543 68999999998754 22221 1111222344432
Q ss_pred ccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC
Q 048801 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD 556 (1715)
Q Consensus 477 ~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD 556 (1715)
....++.-.++.+.++|..+.+....+. . +... ...+++|
T Consensus 76 ---------~~lyv~t~~~~~v~viD~~t~~v~~~i~---------~-------------------g~~~---g~glt~D 115 (266)
T 2iwa_A 76 ---------EKLYQVVWLKNIGFIYDRRTLSNIKNFT---------H-------------------QMKD---GWGLATD 115 (266)
T ss_dssp ---------TEEEEEETTCSEEEEEETTTTEEEEEEE---------C-------------------CSSS---CCEEEEC
T ss_pred ---------CEEEEEEecCCEEEEEECCCCcEEEEEE---------C-------------------CCCC---eEEEEEC
Confidence 2466677788999999998755333220 0 0011 1335668
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEEecCC-----CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEccc-
Q 048801 557 NRFVLAAIMDCRICVWNAVDGSLVHSLTGHS-----ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGR- 630 (1715)
Q Consensus 557 G~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~-----~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~- 630 (1715)
|+.|+++..++.|.++|..+.+.+..+.-.. ..++.+.|. ++.+.+....++.|.+.|..+++.+..+....
T Consensus 116 g~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~ 193 (266)
T 2iwa_A 116 GKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKDGTLLGWILLPNL 193 (266)
T ss_dssp SSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCCEEEEEECHHH
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCCCCeEEEEECCCCcEEEEEECCCc
Confidence 8888877778999999999999888876321 236778887 45777776678899999999999999998431
Q ss_pred ------------ceEEEEEEcCCCCEEEE-EeCCCeEEEEECCCC
Q 048801 631 ------------FKLVDGKFSPDGTSIVL-SDDVGQIYLLNTGQG 662 (1715)
Q Consensus 631 ------------~~V~svafSPDG~~LAs-gs~DG~I~IWdl~tG 662 (1715)
.....++|+|+++.|++ +...+.|++.++...
T Consensus 194 ~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 194 RKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp HHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred ccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 24578999999876665 557789999887543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.9e-05 Score=99.88 Aligned_cols=269 Identities=10% Similarity=-0.009 Sum_probs=167.6
Q ss_pred CCCCEEEEEeC-CCcEEEEeCCCCcEEEEecC-CCCCeEEEEE-C-CCCCEEEEEe------------------CCCeeE
Q 048801 253 RSGRFVITGSD-DRLVKIWSMETAFCLASCRG-HEGDITDLAV-S-SNNTLVASAS------------------NDFVIR 310 (1715)
Q Consensus 253 pDG~~LaTGS~-DGtIrIWDl~tgk~l~tL~g-Hs~~VtsLaf-S-pDg~lLASGS------------------~DGtIr 310 (1715)
+||++|+.... ++.|.+.|+.+.++...+.- ....+..+++ + |++.+|++++ .++.|.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 48888887765 56799999999998885542 2346889998 5 9999999885 246799
Q ss_pred EEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCC---------------cEEEEecCCCCCcceecCCCCCC
Q 048801 311 VWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG---------------TCRIWDARYSQYSPRIYLPKPPD 375 (1715)
Q Consensus 311 VWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DG---------------tVrIWDl~tg~~l~~i~~~~~~~ 375 (1715)
+.|..+.+.+.++.--. ....++++|+++ ++++++.+. .|.+.|+....
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk---~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~------------ 242 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGK---WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE------------ 242 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSS---EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH------------
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCC---EEEEEecCcccCcchhhccccccceEEEeecccee------------
Confidence 99999988888776322 456788999988 556555442 12333221110
Q ss_pred CccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEE
Q 048801 376 AITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455 (1715)
Q Consensus 376 ~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLa 455 (1715)
.+.++|+++.. +.|.|.|..+.+ ... .+..+.. .....++.
T Consensus 243 ----------------------------~~v~~Gk~~~i----~~V~VID~~~~~----~~~--~~~~Ipv-g~~PhGv~ 283 (595)
T 1fwx_A 243 ----------------------------KAIAAGDYQEL----NGVKVVDGRKEA----SSL--FTRYIPI-ANNPHGCN 283 (595)
T ss_dssp ----------------------------HHHHHTCSEEE----TTEEEEECSGGG----CCS--SEEEEEE-ESSCCCEE
T ss_pred ----------------------------EeccCCCeeEE----CcEEEEeCcccC----Cce--eEEEEec-CCCceEEE
Confidence 12345554443 449999998621 000 0112211 12456789
Q ss_pred EccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccC--cccccccccccccCCCCCCCCCCC
Q 048801 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH--GKVGRWTRAYHLKVPPPPLPPQPP 533 (1715)
Q Consensus 456 fspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 533 (1715)
++|+| ...++++..+.+|.++|+.+.+.. +++ ..
T Consensus 284 ~sPDG-------------------------k~v~V~~~~s~~VsVid~~~~~~~~~~~l---~~---------------- 319 (595)
T 1fwx_A 284 MAPDK-------------------------KHLCVAGKLSPTVTVLDVTRFDAVFYENA---DP---------------- 319 (595)
T ss_dssp ECTTS-------------------------SEEEEECTTSSBEEEEEGGGHHHHHHSCC---CG----------------
T ss_pred EcCCC-------------------------CEEEEeCCCCCeEEEEECccccccccccc---Cc----------------
Confidence 99998 346677778999999999853210 000 00
Q ss_pred CCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC----------CceEEEEecCCCCe-----EEEEEccC
Q 048801 534 RGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD----------GSLVHSLTGHSASS-----YVLDVHPF 598 (1715)
Q Consensus 534 ~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s----------g~~l~tL~gH~~~V-----~sLafSP~ 598 (1715)
...+.....-..+...++|+++|...++.-.|+.|.+||+.+ .+.+.++..|..+- .++.++|
T Consensus 320 -~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~- 397 (595)
T 1fwx_A 320 -RSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA- 397 (595)
T ss_dssp -GGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC-
T ss_pred -ccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC-
Confidence 000111112234678899999995455667799999999977 56777777665432 1224578
Q ss_pred CCcEEEEEeC-C-CcE-----------EEEECCCCce
Q 048801 599 NPRIAMSAGY-D-GRT-----------IVWDIWEGTP 622 (1715)
Q Consensus 599 dg~lLaSgs~-D-GtI-----------~VWDl~tgk~ 622 (1715)
++++|+++.. . .++ .++|+..++.
T Consensus 398 DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 398 TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 5666666542 2 233 8899965553
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0011 Score=85.08 Aligned_cols=111 Identities=13% Similarity=0.045 Sum_probs=77.2
Q ss_pred CCCC---EEEEEecCCeEEEEECCCCceEEEEecCCC-------------Ce----------------------------
Q 048801 555 LDNR---FVLAAIMDCRICVWNAVDGSLVHSLTGHSA-------------SS---------------------------- 590 (1715)
Q Consensus 555 PDG~---~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~-------------~V---------------------------- 590 (1715)
.+|+ .|+.++.+|.|+++|..+|+++..+..... ++
T Consensus 331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G 410 (582)
T 1flg_A 331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG 410 (582)
T ss_dssp SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence 4674 788899999999999999999887653320 00
Q ss_pred ----EEEEEccCCCcEEEEEe--------------------------------CCCcEEEEECCCCceEEEEEcccceEE
Q 048801 591 ----YVLDVHPFNPRIAMSAG--------------------------------YDGRTIVWDIWEGTPIRIYEIGRFKLV 634 (1715)
Q Consensus 591 ----~sLafSP~dg~lLaSgs--------------------------------~DGtI~VWDl~tgk~l~tl~~h~~~V~ 634 (1715)
..++++|..+.+++... .+|.|..||+.+|+.+.....+. ++.
T Consensus 411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~ 489 (582)
T 1flg_A 411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLW 489 (582)
T ss_dssp SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCC
T ss_pred ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCc
Confidence 12456664444443321 36889999999999988776432 222
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 635 DGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 635 svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
.......|.++++++.||.|+.||..+|+.+-
T Consensus 490 ~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW 521 (582)
T 1flg_A 490 AGVLATAGNLVFTGTGDGYFKAFDAKSGKELW 521 (582)
T ss_dssp SCCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccceEeCCCEEEEECCCCcEEEEECCCCCEEE
Confidence 22223356778889999999999999998763
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00055 Score=80.60 Aligned_cols=240 Identities=10% Similarity=0.058 Sum_probs=146.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeC--------------------CCCCeEEEEecC-CCCcceE
Q 048801 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRG--------------------HTGAVTAIAFSP-RPSAIYQ 344 (1715)
Q Consensus 286 ~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~g--------------------H~~~VtsLafSP-dg~~~~~ 344 (1715)
....+++|++++++++++..++.|..|+..++.. ..+.. ....+.+|++.+ ++ .
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g----~ 93 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN----Q 93 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT----E
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCC----c
Confidence 3456789999999888888899999999876543 33321 013578999997 55 3
Q ss_pred EEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecC------
Q 048801 345 LLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSS------ 417 (1715)
Q Consensus 345 LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~------ 417 (1715)
|+.+...+.|..+|..++... .+... ..+ ........+++.+ +|.++++-..
T Consensus 94 l~v~d~~~~i~~~d~~~g~~~-~~~~~-----~~~---------------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~ 152 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGGHAT-QLATS-----VDG---------------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDR 152 (322)
T ss_dssp EEEEETTTEEEEECTTCEECE-EEESE-----ETT---------------EECSCEEEEEECTTTCCEEEEESCSSCCTT
T ss_pred EEEEECCCCEEEEeCCCCEEE-Eeccc-----CCC---------------CcccccceEEEecCCCEEEEECCccccccc
Confidence 555544455888887654321 11100 000 0112367899999 9987776432
Q ss_pred -----------CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccC
Q 048801 418 -----------DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCH 486 (1715)
Q Consensus 418 -----------DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~ 486 (1715)
+|.|..|+..++.. ..+.......+.|++++++
T Consensus 153 ~~~~~~~~~~~~g~v~~~d~~~~~~----------~~~~~~~~~p~gia~~~dg-------------------------- 196 (322)
T 2fp8_A 153 GVQQIMDTSDKTGRLIKYDPSTKET----------TLLLKELHVPGGAEVSADS-------------------------- 196 (322)
T ss_dssp CHHHHHHHTCCCEEEEEEETTTTEE----------EEEEEEESCCCEEEECTTS--------------------------
T ss_pred ccceehcccCCCceEEEEeCCCCEE----------EEeccCCccCcceEECCCC--------------------------
Confidence 36788888765421 1111111234568888875
Q ss_pred c-eEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec
Q 048801 487 D-NIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM 565 (1715)
Q Consensus 487 ~-~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~ 565 (1715)
+ ++++-...+.|.+|++..... +. ...+....+ ...++++++|++.++...
T Consensus 197 ~~lyv~d~~~~~I~~~~~~~~~~-~~--------------------------~~~~~~~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 197 SFVLVAEFLSHQIVKYWLEGPKK-GT--------------------------AEVLVKIPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp SEEEEEEGGGTEEEEEESSSTTT-TC--------------------------EEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcC-Cc--------------------------cceEEeCCC-CCCeEECCCCCEEEEecC
Confidence 4 445556678999998874210 00 000000112 677899999987766544
Q ss_pred ----------CCeEEEEECCCCceEEEEecCC----CCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 566 ----------DCRICVWNAVDGSLVHSLTGHS----ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 566 ----------DGtI~IWDl~sg~~l~tL~gH~----~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
.+.|.++|. .|+.+..+.... ..++++++ . +++++++....+.|.++++.
T Consensus 249 ~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~-~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-H-DGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp ETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-E-TTEEEEECSSCSEEEEEEC-
T ss_pred cccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-e-CCEEEEeecCCCceEEEecc
Confidence 467888886 588877776442 34666666 3 56777777678889998875
|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A | Back alignment and structure |
|---|
Probab=98.06 E-value=3.3e-06 Score=91.56 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=58.1
Q ss_pred CCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHhhc
Q 048801 1652 FPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1652 ~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
+.-||||.||++||+++.|.++++.+.||++|++||..||++++++.+...+|...|.+.|.+
T Consensus 101 ~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~~e~~~ag~~l~~~f~~~l~~ 163 (183)
T 3lqh_A 101 QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVKSFFIRQMER 163 (183)
T ss_dssp C--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCChhhhhhhhHHHHHHHHHHHH
Confidence 477999999999999999999999999999999999999999999999999999999887754
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.078 Score=68.55 Aligned_cols=353 Identities=8% Similarity=-0.097 Sum_probs=189.1
Q ss_pred EcCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC--CCeeEEEECC
Q 048801 239 LRGHRDAVYCAIFDRSGRFVI-TGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN--DFVIRVWRLP 315 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~La-TGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~--DGtIrVWDl~ 315 (1715)
+..-......+++++.++.|+ +-...+.|.+.++........+...-.....|++.|.+.+|+.+.. .+.|...+++
T Consensus 79 ~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d 158 (619)
T 3s94_A 79 VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD 158 (619)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC
Confidence 333335788999999665555 4456789999998755433333344556778999997666665554 3566666764
Q ss_pred CCCceEEE-eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 316 DGLPISVL-RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 316 tg~~l~~L-~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
|.....+ ...-...+.|++.+++.. +.++-...+.|...|+..... ..+..
T Consensus 159 -G~~~~~l~~~~~~~P~Glald~~~~~--LY~aD~~~~~I~~~~~dG~~~-~~~~~------------------------ 210 (619)
T 3s94_A 159 -GSSRFIIINSEIYWPNGLTLDYEEQK--LYWADAKLNFIHKSNLDGTNR-QAVVK------------------------ 210 (619)
T ss_dssp -SCSCEEEECSSCSSEEEEEEETTTTE--EEEEETTTCCEEEESSSCCEE-C----------------------------
T ss_pred -CCceEEEEeCCCCCCcEEEEEccCCE--EEEEeCCCCeEEEecCCCCcc-EEEEe------------------------
Confidence 4434333 334456789999987663 344445667888888764321 11100
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEc-cCccc---------cc
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS-GCAVA---------SR 464 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafs-pdg~a---------s~ 464 (1715)
........+++..+ .++++-...+.|...|..+++.. ..+.........+++. +.... ..
T Consensus 211 ~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~---------~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng 280 (619)
T 3s94_A 211 GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL---------REIHSDIFSPMDIHAFSQQRQPNATNPCGIDNG 280 (619)
T ss_dssp -----CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC---------EECCSCCCCCSEEEECCGGGSCCCCCTTTTTGG
T ss_pred CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc---------EEEecCCCCCcEEEEEccccCCCccccccCCCC
Confidence 00111245666655 55666666788888888765421 1111111111122211 10000 00
Q ss_pred ccc----------------ccccc-ccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCC
Q 048801 465 SAM----------------SDAFK-EENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPP 527 (1715)
Q Consensus 465 ~~~----------------~~~~~-~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~ 527 (1715)
... ...+. ..+...+.. ....+|+. +..+.|+..++......
T Consensus 281 ~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~--~~~~~Ll~-~~~~~i~~i~l~~~~~~------------------ 339 (619)
T 3s94_A 281 GCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKD--GATELLLL-ARRTDLRRISLDTPDFT------------------ 339 (619)
T ss_dssp GCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCS--SCSEEEEE-EESSCEEEEESSSTTCC------------------
T ss_pred cccceEECCCCCCCceEeCCchheecccCcccCC--CCceEEEE-EcccceEEEecCCCccc------------------
Confidence 000 00000 000000000 01122332 23445555555432100
Q ss_pred CCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE-EEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEE
Q 048801 528 LPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL-AAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSA 606 (1715)
Q Consensus 528 ~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La-Tgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSg 606 (1715)
........-..+.+++|++.+..|+ +-...+.|+.+++........+...-.....|++...++++.++-
T Consensus 340 ---------~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD 410 (619)
T 3s94_A 340 ---------DIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTD 410 (619)
T ss_dssp ---------CEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEE
T ss_pred ---------eeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEe
Confidence 0000011123467899998555554 444578899999865444444443345567899987677788887
Q ss_pred eCCCcEEEEECCCCceEEEEE-cccceEEEEEEcCCCCEEEEEeC--CCeEEEEECC
Q 048801 607 GYDGRTIVWDIWEGTPIRIYE-IGRFKLVDGKFSPDGTSIVLSDD--VGQIYLLNTG 660 (1715)
Q Consensus 607 s~DGtI~VWDl~tgk~l~tl~-~h~~~V~svafSPDG~~LAsgs~--DG~I~IWdl~ 660 (1715)
...+.|.+.++... ....+. ..-....++++.|....|..++. .+.|...++.
T Consensus 411 ~~~~~I~v~~~~G~-~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d 466 (619)
T 3s94_A 411 TGTDRIEVTRLNGT-MRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD 466 (619)
T ss_dssp TTTTEEEEEETTSC-SCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCCCcEEEEeCCCC-eEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC
Confidence 77889999998644 334443 23345789999998666666653 3577777764
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00099 Score=78.37 Aligned_cols=158 Identities=11% Similarity=0.018 Sum_probs=98.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec-C------------------CCCCeEEEEECC-CCCE
Q 048801 240 RGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR-G------------------HEGDITDLAVSS-NNTL 299 (1715)
Q Consensus 240 ~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~-g------------------Hs~~VtsLafSp-Dg~l 299 (1715)
.+.-....+++++++|++++++..++.|..|+..++....... . ....+..|++.+ ++.
T Consensus 15 ~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~- 93 (322)
T 2fp8_A 15 EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ- 93 (322)
T ss_dssp ECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-
T ss_pred CCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-
Confidence 3333445678899999988888889999999988665432111 0 113578999997 665
Q ss_pred EEEEeCCCeeEEEECCCCCceEEEeC-----CCCCeEEEEecC-CCCcceEEEEec-----------------CCCcEEE
Q 048801 300 VASASNDFVIRVWRLPDGLPISVLRG-----HTGAVTAIAFSP-RPSAIYQLLSSS-----------------DDGTCRI 356 (1715)
Q Consensus 300 LASGS~DGtIrVWDl~tg~~l~~L~g-----H~~~VtsLafSP-dg~~~~~LaSgS-----------------~DGtVrI 356 (1715)
|+.+...+.|.++|..++.. ..+.. .......+++.+ ++. +.++.. .++.|..
T Consensus 94 l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~---l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 169 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI---VYFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169 (322)
T ss_dssp EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC---EEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE---EEEECCcccccccccceehcccCCCceEEE
Confidence 44454455588888765543 22221 113468899999 775 334322 1366777
Q ss_pred EecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEe-cCCCeEEEEeCCC
Q 048801 357 WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG-SSDTFARVWSACK 428 (1715)
Q Consensus 357 WDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatG-s~DG~IrVWDl~t 428 (1715)
||..+++...... .......++|+++|+.|.++ +..+.|.+|++..
T Consensus 170 ~d~~~~~~~~~~~--------------------------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 170 YDPSTKETTLLLK--------------------------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp EETTTTEEEEEEE--------------------------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred EeCCCCEEEEecc--------------------------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 7776554211100 01124578999999855544 5668999999875
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0026 Score=74.37 Aligned_cols=247 Identities=10% Similarity=-0.031 Sum_probs=137.5
Q ss_pred CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec-CCC-
Q 048801 275 AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS-DDG- 352 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS-~DG- 352 (1715)
.+.+..+... .....++|+++++++++....+.|..||... .....+. ....+.+|++.+++. ++++.. .++
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~---l~vad~~~~~~ 95 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGD---LVATGWNADSI 95 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSC---EEEEEECTTSC
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCc---EEEEeccCCcc
Confidence 4455555432 4678899999999777776789999999764 3333333 345689999999986 344433 333
Q ss_pred cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCC--
Q 048801 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSS-- 430 (1715)
Q Consensus 353 tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~-- 430 (1715)
.|..+|..+++.......+. ......+++.+++..+++-..++.|.++|..++.
T Consensus 96 ~v~~~d~~~g~~~~~~~~~~------------------------~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLTLPD------------------------AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp EEEEEECTTSCEEEEEECTT------------------------CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEEcCCCCeEEEEEeCCC------------------------ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence 46666766665432211100 0112344455666556665567888888875421
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
+......... ......-...+.| ++++ ...+++-...+.|.+|++... +
T Consensus 152 v~~~~~~~~~-~~~~~~~~~pngi--s~dg-------------------------~~lyv~d~~~~~I~~~~~~~~---g 200 (306)
T 2p4o_A 152 IWLEHPMLAR-SNSESVFPAANGL--KRFG-------------------------NFLYVSNTEKMLLLRIPVDST---D 200 (306)
T ss_dssp EEEECGGGSC-SSTTCCSCSEEEE--EEET-------------------------TEEEEEETTTTEEEEEEBCTT---S
T ss_pred EEEECCcccc-ccccCCCCcCCCc--CcCC-------------------------CEEEEEeCCCCEEEEEEeCCC---C
Confidence 0000000000 0000011122233 3332 235666677889999988641 1
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEE--EEecCCC
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVH--SLTGHSA 588 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~--tL~gH~~ 588 (1715)
..... ..+ ........++++++|+++++....+.|.+++.. |+... .+.....
T Consensus 201 ~~~~~-----------------------~~~-~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~ 255 (306)
T 2p4o_A 201 KPGEP-----------------------EIF-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVI 255 (306)
T ss_dssp CBCCC-----------------------EEE-EESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCT
T ss_pred CCCcc-----------------------EEE-eccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccC
Confidence 11000 000 000234568999999887777778899999974 66533 2333335
Q ss_pred CeEEEEEc---cCCCcEEEEEe
Q 048801 589 SSYVLDVH---PFNPRIAMSAG 607 (1715)
Q Consensus 589 ~V~sLafS---P~dg~lLaSgs 607 (1715)
..++++|. |+++.++++..
T Consensus 256 ~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 256 GSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp TEEEEEECCSTTTTTEEEEEEC
T ss_pred CceEEEEecccCCCCEEEEECC
Confidence 67899998 75455655544
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00035 Score=80.19 Aligned_cols=194 Identities=12% Similarity=0.049 Sum_probs=124.0
Q ss_pred eeEEEEcCCCCC--eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEE--EEECCCCCEEE-EEeCCCe
Q 048801 234 QNIKKLRGHRDA--VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITD--LAVSSNNTLVA-SASNDFV 308 (1715)
Q Consensus 234 k~l~~L~GH~~~--Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~Vts--LafSpDg~lLA-SGS~DGt 308 (1715)
+.+.++ .|... ...+.|+ ++.+.++.+.+|.|+++|+++++.+..+ - ...... +++. +..|+ +.-.++.
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCE
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCE
Confidence 455566 44433 4688887 4566677778899999999999998887 2 233333 5554 44444 4445889
Q ss_pred eEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCC
Q 048801 309 IRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 309 IrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
+.+||..+++.+.++... ..-..++ +++. .|+.+..++.|.++|..+.+.+.++........
T Consensus 118 v~V~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~---~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~------------ 179 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYS-GEGWGLC--YWNG---KLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP------------ 179 (268)
T ss_dssp EEEEETTTTEEEEEEECS-SCCCCEE--EETT---EEEEECSSSEEEEECTTTCCEEEEEECEETTEE------------
T ss_pred EEEEECCcCcEEEEEeCC-CceeEEe--cCCC---EEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc------------
Confidence 999999999999998743 2223444 4555 555556689999999999887777654221100
Q ss_pred CCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee----ecCCCCCeeEEEEccCc
Q 048801 389 PSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV----LSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~----l~gH~~~V~sLafspdg 460 (1715)
-..+..+.|. +|.++|....+..|.+.|..++++........+... .....+..+.|+++|++
T Consensus 180 --------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~ 246 (268)
T 3nok_A 180 --------VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGS 246 (268)
T ss_dssp --------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTT
T ss_pred --------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCC
Confidence 1124556666 777777666788999999998765221111000000 01122466889999876
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0004 Score=78.93 Aligned_cols=198 Identities=13% Similarity=0.030 Sum_probs=122.4
Q ss_pred ceeEEEEcCCCC--CeEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEE-eCCC
Q 048801 233 MQNIKKLRGHRD--AVYCAIFDRSGRFVITGSDD--RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASA-SNDF 307 (1715)
Q Consensus 233 ~k~l~~L~GH~~--~Vt~VafSpDG~~LaTGS~D--GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASG-S~DG 307 (1715)
.+.+.++ .|.. -...+.|+. +.+..+.+.+ ..|+++|+.+++.+..+.-... .....+..++..|... -.++
T Consensus 9 ~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 9 YRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSS
T ss_pred eEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCC
Confidence 4556666 5654 356899986 5556666665 4899999999999988764332 2222222234444444 4588
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
.+.+||..+.+.+.++.... .-..|+ +++. .|+.+..++.|.++|..+.+.+.++.+......
T Consensus 86 ~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~---~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~----------- 148 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYPG-EGWALT--SDDS---HLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRP----------- 148 (243)
T ss_dssp EEEEEETTTTEEEEEEECSS-CCCEEE--ECSS---CEEEECSSSEEEEECTTTCCEEEEEECEETTEE-----------
T ss_pred EEEEEECCcCcEEEEEeCCC-CceEEe--eCCC---EEEEECCCCeEEEEeCCCCeEEEEEEEccCCcc-----------
Confidence 99999999999999987433 223444 4555 345555688999999999887776654221100
Q ss_pred CCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee----cCCCCCeeEEEEccCc
Q 048801 388 GPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL----SGHENDVNYVQFSGCA 460 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l----~gH~~~V~sLafspdg 460 (1715)
-..+..+.+. +|.+++..-.+..|.+.|..++++........+.... ....+..+.|+++|.+
T Consensus 149 ---------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~ 215 (243)
T 3mbr_X 149 ---------LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEH 215 (243)
T ss_dssp ---------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTT
T ss_pred ---------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCC
Confidence 1124455554 7777766666789999999987652211110000000 1122356889999875
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00023 Score=92.77 Aligned_cols=281 Identities=11% Similarity=0.083 Sum_probs=148.0
Q ss_pred EEEECC-CCCEEEEEeCCC-----------eeEEEECCCCCc--eEEEe-CCCCCeEEEEecCCCCcceEEEEec-CCCc
Q 048801 290 DLAVSS-NNTLVASASNDF-----------VIRVWRLPDGLP--ISVLR-GHTGAVTAIAFSPRPSAIYQLLSSS-DDGT 353 (1715)
Q Consensus 290 sLafSp-Dg~lLASGS~DG-----------tIrVWDl~tg~~--l~~L~-gH~~~VtsLafSPdg~~~~~LaSgS-~DGt 353 (1715)
++++.+ ++++++.|+.+. .+.+||+.+++. +..+. .+.....++++..++. +++.|+ .+..
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~---lyv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ---IVVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC---EEEECSSSTTC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC---EEEeCCCCCCc
Confidence 556677 889999887643 588999987753 33332 2333445677888876 677777 4568
Q ss_pred EEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-CC-----CeEEEEeCC
Q 048801 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS-SD-----TFARVWSAC 427 (1715)
Q Consensus 354 VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs-~D-----G~IrVWDl~ 427 (1715)
+.+||..+++....-..+ ....-.++++.++|++++.|+ .+ ..+.+||..
T Consensus 267 v~~yd~~t~~W~~~~~~~------------------------~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 267 TSLYDSSSDSWIPGPDMQ------------------------VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp EEEEEGGGTEEEECCCCS------------------------SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred eEEecCcCCceeECCCCC------------------------ccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence 999998876532211000 011123556667999999998 34 468889987
Q ss_pred CCCccCCCCC-ceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC---------Ce
Q 048801 428 KSSVEDSEQP-IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD---------GS 497 (1715)
Q Consensus 428 t~~~~~~~~~-~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D---------Gs 497 (1715)
+.+....... ...+.. ..+. .+ + ......++.++.+ ..
T Consensus 323 t~~W~~~~~~~~~p~~~-~~~~-~~----~--------------------------~~~~~iyv~Gg~~g~~~~~~~~~~ 370 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLT-ADKQ-GL----Y--------------------------RSDNHAWLFGWKKGSVFQAGPSTA 370 (656)
T ss_dssp TTEEEEETTSCSGGGCC-CCTT-GG----G--------------------------TTTCSCCEEECGGGCEEECCSSSE
T ss_pred CCcceeCCCcccccccc-cccc-ce----e--------------------------ecCCceEEEECCCCcEEEecCccc
Confidence 6431000000 000000 0000 00 0 0112333444444 35
Q ss_pred EEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC-CCCCEEEEEecCC---------
Q 048801 498 AIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS-LDNRFVLAAIMDC--------- 567 (1715)
Q Consensus 498 IrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS-PDG~~LaTgs~DG--------- 567 (1715)
+..||..+.. |....... . .. .........-.++.|. .+++++++|+.++
T Consensus 371 v~~yd~~~~~-------w~~~~~~~--~---------~~--~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~ 430 (656)
T 1k3i_A 371 MNWYYTSGSG-------DVKSAGKR--Q---------SN--RGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTN 430 (656)
T ss_dssp EEEEECSTTC-------EEEEEEEC--E---------ET--TEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCC
T ss_pred eeeeecCCcc-------eeecCCcc--c---------cc--cccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCc
Confidence 6677766432 11110000 0 00 0000001122344443 4788888887543
Q ss_pred --eEEEEECCCCceEEEE--ecCCCCe-EEEEEccCCCcEEEEEeCC-----------CcEEEEECCCCceEEE--EEcc
Q 048801 568 --RICVWNAVDGSLVHSL--TGHSASS-YVLDVHPFNPRIAMSAGYD-----------GRTIVWDIWEGTPIRI--YEIG 629 (1715)
Q Consensus 568 --tI~IWDl~sg~~l~tL--~gH~~~V-~sLafSP~dg~lLaSgs~D-----------GtI~VWDl~tgk~l~t--l~~h 629 (1715)
.|.+||..+....... ..+.... .++++.| ++++++.||.+ ..+.+||..+.+.... +...
T Consensus 431 ~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~ 509 (656)
T 1k3i_A 431 AHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIV 509 (656)
T ss_dssp EEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSC
T ss_pred ceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECC-CCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCc
Confidence 6888888776654433 2222222 3445556 77888888864 4689999877653321 1111
Q ss_pred cceEEEEEEcCCCCEEEEEeC
Q 048801 630 RFKLVDGKFSPDGTSIVLSDD 650 (1715)
Q Consensus 630 ~~~V~svafSPDG~~LAsgs~ 650 (1715)
+.....+.+.|||+.|++|+.
T Consensus 510 R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 510 RVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCTTEEEEECTTSCEEEEECC
T ss_pred cccccHhhcCCCcEEEecCCC
Confidence 222234566799999999885
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.086 Score=68.13 Aligned_cols=351 Identities=11% Similarity=-0.037 Sum_probs=180.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEe-CCCeeEEEECCCC
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSD--DRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASAS-NDFVIRVWRLPDG 317 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~--DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS-~DGtIrVWDl~tg 317 (1715)
+.-..-..|+++|.+.+|+.... .+.|...+++...........-.....|++++++..|+.+. ..+.|...++...
T Consensus 124 ~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 124 QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT 203 (619)
T ss_dssp SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence 44455678999997666665543 45677777664333333333445678999999766666554 4567888887643
Q ss_pred CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCC-CCCCcc--CccCCCCCCCCCCCCC
Q 048801 318 LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPK-PPDAIT--GKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 318 ~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~-~~~~i~--g~~~~~~~~~~~~~~~ 394 (1715)
.....+.+......+|++..+ . .+++-...+.|...|..+++....+.... .+..+. .....+....++....
T Consensus 204 ~~~~~~~~~~~~P~gi~~~~~-~---ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~n 279 (619)
T 3s94_A 204 NRQAVVKGSLPHPFALTLFED-I---LYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDN 279 (619)
T ss_dssp EEC---------CCCEEESSS-E---EEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTG
T ss_pred ccEEEEeCCCCCceEEEEeCC-E---EEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCC
Confidence 322222212223356777655 2 56666677889999988876544332211 010000 0000111111111110
Q ss_pred CCCc----------ceeEEEEccCCC---------------eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC
Q 048801 395 LQSH----------QILCCAYNANGT---------------VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN 449 (1715)
Q Consensus 395 ~h~~----------~VtslafSpdG~---------------~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~ 449 (1715)
+... ...|. +|.|- +|+.+ ..+.|+..++..... ..+......-.
T Consensus 280 g~Cs~lCl~~~~~~~~~C~--C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~-------~~~~~~~~~l~ 349 (619)
T 3s94_A 280 GGCSHLCLMSPVKPFYQCA--CPTGVKLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDF-------TDIVLQLEDIR 349 (619)
T ss_dssp GGCSSEEEECSSTTSEEEE--CCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTC-------CCEECCCSCCS
T ss_pred CcccceEECCCCCCCceEe--CCchheecccCcccCCCCceEEEEE-cccceEEEecCCCcc-------ceeEEeccccC
Confidence 0000 11111 12111 22222 123444444433210 00000001112
Q ss_pred CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCC
Q 048801 450 DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLP 529 (1715)
Q Consensus 450 ~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~ 529 (1715)
.+..|+|.+.. +..+++-...+.|..+++.....
T Consensus 350 ~~~~ld~d~~~-------------------------~~ly~sD~~~~~I~r~~~~g~~~--------------------- 383 (619)
T 3s94_A 350 HAIAIDYDPVE-------------------------GYIYWTDDEVRAIRRSFIDGSGS--------------------- 383 (619)
T ss_dssp SEEEEEEETTT-------------------------TEEEEEETTTTEEEEEETTSCSC---------------------
T ss_pred ccEEEEEEcCC-------------------------CeEEEEeCCCCeEEEEEcCCCcc---------------------
Confidence 34455555432 23444555567777776653210
Q ss_pred CCCCCCCCcccccCCCCCeeEEEeCCC-CCEEEEEecCCeEEEEECCCCceEEEEe-cCCCCeEEEEEccCCCcEEEEEe
Q 048801 530 PQPPRGGPRQRLLPTPRGVNMIVWSLD-NRFVLAAIMDCRICVWNAVDGSLVHSLT-GHSASSYVLDVHPFNPRIAMSAG 607 (1715)
Q Consensus 530 ~~~~~g~~~~~l~~h~~~VtslafSPD-G~~LaTgs~DGtI~IWDl~sg~~l~tL~-gH~~~V~sLafSP~dg~lLaSgs 607 (1715)
...+...-.....+++... ++++++-+..+.|.+.++... ....+. ..-....+|++.|..+.++++-.
T Consensus 384 --------~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~-~~~~l~~~~l~~P~~iavdp~~G~ly~tD~ 454 (619)
T 3s94_A 384 --------QFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT-MRKILISEDLEEPRAIVLDPMVGYMYWTDW 454 (619)
T ss_dssp --------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECTTCCSEEEEEEETTTTEEEEEEC
T ss_pred --------EEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC-eEEEEEECCCCCeeeEEEEcCCCcEEEecC
Confidence 0001111234568899864 445555556789999998644 333443 34456789999996677776643
Q ss_pred -CCCcEEEEECCCCceEEEEE-cccceEEEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q 048801 608 -YDGRTIVWDIWEGTPIRIYE-IGRFKLVDGKFSPDGTSIVLSDD-VGQIYLLNTGQ 661 (1715)
Q Consensus 608 -~DGtI~VWDl~tgk~l~tl~-~h~~~V~svafSPDG~~LAsgs~-DG~I~IWdl~t 661 (1715)
..+.|...++. |.....+. ..-.....+++++++..|..++. .+.|..+++..
T Consensus 455 g~~~~I~r~~~d-G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG 510 (619)
T 3s94_A 455 GEIPKIERAALD-GSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDG 510 (619)
T ss_dssp SSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSS
T ss_pred CCCCEEEEEccC-CCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCC
Confidence 23677777764 44333333 22345678999998888887765 46888898843
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.012 Score=68.78 Aligned_cols=125 Identities=17% Similarity=0.096 Sum_probs=81.1
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCC--ee
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDF--VI 309 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DG--tI 309 (1715)
..+.+..|..+ .....++|+++|+++++-..++.|..||..+. ....+. ....+..|+++++|+++++..... .|
T Consensus 21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v 97 (306)
T 2p4o_A 21 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPV 97 (306)
T ss_dssp CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceE
Confidence 34556666543 56789999999997777767899999998754 333333 235688999999999766654432 46
Q ss_pred EEEECCCCCceEEEeC-CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCC
Q 048801 310 RVWRLPDGLPISVLRG-HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS 362 (1715)
Q Consensus 310 rVWDl~tg~~l~~L~g-H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg 362 (1715)
..++..+++....... .......+++.+.+. .+++...++.|.++|..++
T Consensus 98 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~---~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 98 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ---YLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp EEEECTTSCEEEEEECTTCSCEEEEEESSSSE---EEEEETTTTEEEEEETTTT
T ss_pred EEEcCCCCeEEEEEeCCCccccCcccccCCCc---EEEEECCCCeEEEEeCCCC
Confidence 6677777765433221 222345555555442 4555556888888887654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00078 Score=77.24 Aligned_cols=179 Identities=9% Similarity=0.038 Sum_probs=121.0
Q ss_pred eeEEEEccCCCeEEEecCCC--eEEEEeCCCCCccCCCCCceeeeeecCCCCCe--eEEEEccCcccccccccccccccc
Q 048801 400 ILCCAYNANGTVFVTGSSDT--FARVWSACKSSVEDSEQPIHELDVLSGHENDV--NYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 400 VtslafSpdG~~LatGs~DG--~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V--~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
...+.|+ ++.++++++.+| .|+++|+.++++ +..+... ... ..+++..
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv---------~~~~~l~-~~~FgeGit~~g----------------- 96 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT---------LQQIELG-KRYFGEGISDWK----------------- 96 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE---------EEEEECC-TTCCEEEEEEET-----------------
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcE---------EEEEecC-CccceeEEEEeC-----------------
Confidence 5778888 777777777766 899999998754 2222111 122 2233332
Q ss_pred cccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC
Q 048801 476 VPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL 555 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP 555 (1715)
...++..-.++.+.+||..+.+....+. ... ....+++
T Consensus 97 ----------~~ly~ltw~~~~v~v~D~~t~~~~~ti~-----------------------------~~~---eG~glt~ 134 (262)
T 3nol_A 97 ----------DKIVGLTWKNGLGFVWNIRNLRQVRSFN-----------------------------YDG---EGWGLTH 134 (262)
T ss_dssp ----------TEEEEEESSSSEEEEEETTTCCEEEEEE-----------------------------CSS---CCCCEEE
T ss_pred ----------CEEEEEEeeCCEEEEEECccCcEEEEEE-----------------------------CCC---CceEEec
Confidence 2455666679999999998765433321 000 1123345
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEEEecC--C---CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEccc
Q 048801 556 DNRFVLAAIMDCRICVWNAVDGSLVHSLTGH--S---ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGR 630 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH--~---~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~ 630 (1715)
|+..|+.+..++.|.++|..+.+.+..+... . ..++.+.|. ++++.+..-.++.|.+.|..+|+.+..+....
T Consensus 135 dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~ 212 (262)
T 3nol_A 135 NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDLNG 212 (262)
T ss_dssp CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEECTT
T ss_pred CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEECCc
Confidence 7787777766788999999999998887642 1 334567775 56777766678899999999999999998531
Q ss_pred ------------ceEEEEEEcCCCCEEEEEeC
Q 048801 631 ------------FKLVDGKFSPDGTSIVLSDD 650 (1715)
Q Consensus 631 ------------~~V~svafSPDG~~LAsgs~ 650 (1715)
.....+||+|+++.|++++.
T Consensus 213 L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 213 ILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp GGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 23468999999888877654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00053 Score=89.39 Aligned_cols=270 Identities=14% Similarity=0.096 Sum_probs=146.3
Q ss_pred EEEecC-CCCcceEEEEecCCC-----------cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcc
Q 048801 332 AIAFSP-RPSAIYQLLSSSDDG-----------TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399 (1715)
Q Consensus 332 sLafSP-dg~~~~~LaSgS~DG-----------tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~ 399 (1715)
++++.+ ++. .++.|+.+. .+.+||..+++.......+. .+...
T Consensus 190 ~~av~~~~g~---l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~----------------------~~~~~ 244 (656)
T 1k3i_A 190 AAAIEPTSGR---VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT----------------------KHDMF 244 (656)
T ss_dssp EEEEETTTTE---EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC----------------------SCCCS
T ss_pred eEEEEecCCE---EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC----------------------CCCCc
Confidence 566776 554 566665432 57889988776432211110 01122
Q ss_pred eeEEEEccCCCeEEEecC-CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccc
Q 048801 400 ILCCAYNANGTVFVTGSS-DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 400 VtslafSpdG~~LatGs~-DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
..++++..+|.++++|+. +..+.+||..+.+- ..+..+.... .-.++++.+++
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W-------~~~~~~~~~R-~~~s~~~~~dg------------------ 298 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW-------IPGPDMQVAR-GYQSSATMSDG------------------ 298 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE-------EECCCCSSCC-SSCEEEECTTS------------------
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCce-------eECCCCCccc-cccceEEecCC------------------
Confidence 345778899999999984 56899999876431 1111111111 11223333333
Q ss_pred ccCCcccCceEEEEc-CC-----CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 048801 479 FKNSWFCHDNIVTCS-RD-----GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIV 552 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS-~D-----GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsla 552 (1715)
..++.|+ .+ ..+.+||+.+.. |...-.... .++... . +. .+
T Consensus 299 --------~iyv~GG~~~~~~~~~~~e~yd~~t~~-------W~~~~~~~~--~p~~~~---~--------~~-----~~ 345 (656)
T 1k3i_A 299 --------RVFTIGGSWSGGVFEKNGEVYSPSSKT-------WTSLPNAKV--NPMLTA---D--------KQ-----GL 345 (656)
T ss_dssp --------CEEEECCCCCSSSCCCCEEEEETTTTE-------EEEETTSCS--GGGCCC---C--------TT-----GG
T ss_pred --------eEEEEeCcccCCcccccceEeCCCCCc-------ceeCCCccc--cccccc---c--------cc-----ce
Confidence 5777777 34 468899987633 332210000 000000 0 00 11
Q ss_pred eCCCCCEEEEEecC---------CeEEEEECCCCceEEEEecCC---------CCeEEEEEccCCCcEEEEEeCCC----
Q 048801 553 WSLDNRFVLAAIMD---------CRICVWNAVDGSLVHSLTGHS---------ASSYVLDVHPFNPRIAMSAGYDG---- 610 (1715)
Q Consensus 553 fSPDG~~LaTgs~D---------GtI~IWDl~sg~~l~tL~gH~---------~~V~sLafSP~dg~lLaSgs~DG---- 610 (1715)
+..++..++.|+.+ ..|..||..+.........+. ..-.++.|...++++++.||.++
T Consensus 346 ~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~ 425 (656)
T 1k3i_A 346 YRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS 425 (656)
T ss_dssp GTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS
T ss_pred eecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCC
Confidence 22334444444333 467889988776444332221 12345555555788998888543
Q ss_pred -------cEEEEECCCCceEEEE--EcccceE-EEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCccccc--
Q 048801 611 -------RTIVWDIWEGTPIRIY--EIGRFKL-VDGKFSPDGTSIVLSDDV-----------GQIYLLNTGQGESQKD-- 667 (1715)
Q Consensus 611 -------tI~VWDl~tgk~l~tl--~~h~~~V-~svafSPDG~~LAsgs~D-----------G~I~IWdl~tGe~~k~-- 667 (1715)
.|.+||..+....... ....... .++++.|+|+++++|+.+ ..+.+||..+++-...
T Consensus 426 ~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~ 505 (656)
T 1k3i_A 426 DATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP 505 (656)
T ss_dssp BCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC
T ss_pred CcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCC
Confidence 6788888776654432 1122222 345678999999999754 4689999877653221
Q ss_pred cc----c--ceeecCCCccEEEcC
Q 048801 668 AK----Y--DQFFLGDYRPLIRDS 685 (1715)
Q Consensus 668 ~~----~--~~~fs~D~r~L~~d~ 685 (1715)
.+ + ...+.+|++.++...
T Consensus 506 ~~~~R~~hs~a~ll~dg~v~v~GG 529 (656)
T 1k3i_A 506 NSIVRVYHSISLLLPDGRVFNGGG 529 (656)
T ss_dssp CSSCCCTTEEEEECTTSCEEEEEC
T ss_pred CCCccccccHhhcCCCcEEEecCC
Confidence 11 1 134567888887765
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.019 Score=68.72 Aligned_cols=258 Identities=9% Similarity=-0.085 Sum_probs=152.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEE-EEeCCCeeEEEECCCCCceE
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVA-SASNDFVIRVWRLPDGLPIS 321 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLA-SGS~DGtIrVWDl~tg~~l~ 321 (1715)
.+..+|.+..+++ +|+.+. ...|+..++........+.+ ...+..++|++.+..|+ +-...+.|..+++..+....
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 109 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 109 (349)
T ss_dssp TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence 3445676666644 444443 35688888876655544444 34578999997655555 44467889999987665544
Q ss_pred EEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCccee
Q 048801 322 VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQIL 401 (1715)
Q Consensus 322 ~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vt 401 (1715)
.+.........|++.+.+.. ++++-...+.|.+.++..... ..+.. .......
T Consensus 110 ~~~~~~~~p~glavd~~~g~--ly~~d~~~~~I~~~~~dG~~~-~~l~~------------------------~~l~~P~ 162 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWVHDK--LYWTDSGTSRIEVANLDGAHR-KVLLW------------------------QSLEKPR 162 (349)
T ss_dssp EECSSCSCCCEEEEETTTTE--EEEEETTTTEEEEEETTSCSC-EEEEC------------------------TTCSCEE
T ss_pred EEeCCCCCccEEEEecCCCe--EEEEcCCCCeEEEEcCCCCce-EEEEe------------------------CCCCCcc
Confidence 44433445678999876552 445656678899988764321 11110 0112357
Q ss_pred EEEEccCC-CeEEEecCC-CeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccc
Q 048801 402 CCAYNANG-TVFVTGSSD-TFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKF 479 (1715)
Q Consensus 402 slafSpdG-~~LatGs~D-G~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~ 479 (1715)
.++++|.+ .++++-... +.|..+++..... .......-...+.|++++.+
T Consensus 163 ~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~---------~~~~~~~~~~PnGla~d~~~------------------- 214 (349)
T 3v64_C 163 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGR---------RIIADTHLFWPNGLTIDYAG------------------- 214 (349)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCSC---------EESCCSSCSCEEEEEEETTT-------------------
T ss_pred eEEEecCcCeEEEeccCCCCEEEEEeCCCCCc---------EEEEECCCCCcceEEEeCCC-------------------
Confidence 89999855 455554444 7788888764211 11111223356788998754
Q ss_pred cCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCE
Q 048801 480 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRF 559 (1715)
Q Consensus 480 ~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~ 559 (1715)
..++++-...+.|..+++...... ..+.........+++ ..+.+
T Consensus 215 ------~~lY~aD~~~~~I~~~~~dG~~~~-----------------------------~~~~~~~~~P~giav-~~~~l 258 (349)
T 3v64_C 215 ------RRMYWVDAKHHVIERANLDGSHRK-----------------------------AVISQGLPHPFAITV-FEDSL 258 (349)
T ss_dssp ------TEEEEEETTTTEEEEEETTSCSCE-----------------------------EEECSSCSSEEEEEE-ETTEE
T ss_pred ------CEEEEEECCCCEEEEEeCCCCceE-----------------------------EEEeCCCCCceEEEE-ECCEE
Confidence 245666667788888887632100 000011223456666 35556
Q ss_pred EEEEecCCeEEEEECCCCceEEEEecCCCCeEEEE
Q 048801 560 VLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLD 594 (1715)
Q Consensus 560 LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLa 594 (1715)
+++-...+.|..++..+|+.+..+.........|+
T Consensus 259 y~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~ 293 (349)
T 3v64_C 259 YWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH 293 (349)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred EEecCCCCeEEEEEccCCCccEEeccCCCCCceEE
Confidence 66666678888888777877766654333333443
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00076 Score=77.39 Aligned_cols=179 Identities=12% Similarity=0.032 Sum_probs=121.4
Q ss_pred eeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccc
Q 048801 400 ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKF 479 (1715)
Q Consensus 400 VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~ 479 (1715)
...+.|+ ++.++++.+.+|.|+++|+.++++ ...+ +.. ......+++..
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv------~~~~--l~~-~~FgeGit~~g--------------------- 105 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQP------VWME--RLG-NIFAEGLASDG--------------------- 105 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSC------SEEE--ECT-TCCEEEEEECS---------------------
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcE------EeEE--CCC-CcceeEEEEeC---------------------
Confidence 4677887 467788888889999999998764 1222 221 11112244433
Q ss_pred cCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCE
Q 048801 480 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRF 559 (1715)
Q Consensus 480 ~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~ 559 (1715)
...++..-.++.+.+||..+.+.+..+.. ...+ ..+++|+..
T Consensus 106 ------~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~-----------------------------~~eG---wGLt~Dg~~ 147 (268)
T 3nok_A 106 ------ERLYQLTWTEGLLFTWSGMPPQRERTTRY-----------------------------SGEG---WGLCYWNGK 147 (268)
T ss_dssp ------SCEEEEESSSCEEEEEETTTTEEEEEEEC-----------------------------SSCC---CCEEEETTE
T ss_pred ------CEEEEEEccCCEEEEEECCcCcEEEEEeC-----------------------------CCce---eEEecCCCE
Confidence 24666677899999999988664433210 0011 223357888
Q ss_pred EEEEecCCeEEEEECCCCceEEEEecC--C---CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEccc----
Q 048801 560 VLAAIMDCRICVWNAVDGSLVHSLTGH--S---ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGR---- 630 (1715)
Q Consensus 560 LaTgs~DGtI~IWDl~sg~~l~tL~gH--~---~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~---- 630 (1715)
|+.+..++.|.++|..+.+.+.++.-. . ..++.+.|. ++++.+..-.+..|.+.|..+|+.+..+....
T Consensus 148 L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~ 225 (268)
T 3nok_A 148 LVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRA 225 (268)
T ss_dssp EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHH
T ss_pred EEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCccc
Confidence 888777899999999999998887632 2 234667775 56777666678899999999999999988431
Q ss_pred ---------ceEEEEEEcCCCCEEEEEe
Q 048801 631 ---------FKLVDGKFSPDGTSIVLSD 649 (1715)
Q Consensus 631 ---------~~V~svafSPDG~~LAsgs 649 (1715)
.-...+||+|+++.|++++
T Consensus 226 ~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 226 VAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp HTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred ccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 2356899999877666554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.02 Score=68.64 Aligned_cols=244 Identities=10% Similarity=-0.076 Sum_probs=144.5
Q ss_pred eEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcce
Q 048801 288 ITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPR 367 (1715)
Q Consensus 288 VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~ 367 (1715)
.+|.+..++. +|+.+ ....|+..++........+. ....+..++|.+.... ++++-...+.|..+++..+.....
T Consensus 36 ~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~--ly~~D~~~~~I~r~~~~g~~~~~~ 110 (349)
T 3v64_C 36 RSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRREL--VFWSDVTLDRILRANLNGSNVEEV 110 (349)
T ss_dssp SCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTE--EEEEETTTTEEEEEETTSCSCEEE
T ss_pred CcccccccCc-eeEee-cccceEEEeCCCCeeEEeec-CCCceEEEEEeccccE--EEEEeccCCceEEEecCCCCceEE
Confidence 3455555544 34333 23457778876554443333 3455889999986652 445556678898898875542211
Q ss_pred ecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecC
Q 048801 368 IYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG 446 (1715)
Q Consensus 368 i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g 446 (1715)
+.. .......+++.+ .+.++++-...+.|.+.++..... ...+..
T Consensus 111 ~~~-------------------------~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---------~~l~~~ 156 (349)
T 3v64_C 111 VST-------------------------GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---------KVLLWQ 156 (349)
T ss_dssp ECS-------------------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------EEEECT
T ss_pred EeC-------------------------CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce---------EEEEeC
Confidence 100 012246788887 455666666678899998864311 111222
Q ss_pred CCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC-CeEEEEecCCCccCcccccccccccccCCC
Q 048801 447 HENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD-GSAIIWIPRSRRSHGKVGRWTRAYHLKVPP 525 (1715)
Q Consensus 447 H~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D-GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~ 525 (1715)
.-.....+++.|.+ +.++++-... +.|..+++....
T Consensus 157 ~l~~P~~iavdp~~-------------------------g~ly~td~~~~~~I~r~~~dG~~------------------ 193 (349)
T 3v64_C 157 SLEKPRAIALHPME-------------------------GTIYWTDWGNTPRIEASSMDGSG------------------ 193 (349)
T ss_dssp TCSCEEEEEEETTT-------------------------TEEEEEECSSSCEEEEEETTSCS------------------
T ss_pred CCCCcceEEEecCc-------------------------CeEEEeccCCCCEEEEEeCCCCC------------------
Confidence 33456788888754 2345554444 677777765311
Q ss_pred CCCCCCCCCCCCccccc-CCCCCeeEEEeCCCCCEEEEE-ecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEE
Q 048801 526 PPLPPQPPRGGPRQRLL-PTPRGVNMIVWSLDNRFVLAA-IMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIA 603 (1715)
Q Consensus 526 ~~~~~~~~~g~~~~~l~-~h~~~VtslafSPDG~~LaTg-s~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lL 603 (1715)
...+. ..-...+.|+|+|++..|+.+ ...+.|..+++........+........+|++. ++.++
T Consensus 194 ------------~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly 259 (349)
T 3v64_C 194 ------------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLY 259 (349)
T ss_dssp ------------CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEE
T ss_pred ------------cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEE
Confidence 00010 112346789999876666555 456789999986543333344444556778872 56777
Q ss_pred EEEeCCCcEEEEECCCCceEEEEE
Q 048801 604 MSAGYDGRTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 604 aSgs~DGtI~VWDl~tgk~l~tl~ 627 (1715)
++-...+.|..++..+|+.+..+.
T Consensus 260 ~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 260 WTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEE
T ss_pred EecCCCCeEEEEEccCCCccEEec
Confidence 777777888888877777766665
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.017 Score=70.24 Aligned_cols=256 Identities=8% Similarity=-0.098 Sum_probs=149.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEE-EEeCCCeeEEEECCCCCceEEEe
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVA-SASNDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLA-SGS~DGtIrVWDl~tg~~l~~L~ 324 (1715)
-+|.+..+.+ +|+.+. ...|+..++........+.+ ...+..++|++.+..|+ +-...+.|..+++..+.....+.
T Consensus 79 ~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 79 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp SCEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred CeECCccccc-eeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 4466666644 444443 35788889887665554443 44578999997655554 54567889999987665444444
Q ss_pred CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEE
Q 048801 325 GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCA 404 (1715)
Q Consensus 325 gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsla 404 (1715)
........|++.+.+.. ++++-...+.|.+.++..... ..+.. ........++
T Consensus 156 ~~~~~p~glavd~~~g~--lY~~d~~~~~I~~~~~dg~~~-~~l~~------------------------~~l~~P~gia 208 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDK--LYWTDSGTSRIEVANLDGAHR-KVLLW------------------------QSLEKPRAIA 208 (386)
T ss_dssp SSCSCCCCEEEETTTTE--EEEEETTTTEEEECBTTSCSC-EEEEC------------------------SSCSCEEEEE
T ss_pred CCCCCccEEEEEeCCCe--EEEEcCCCCeEEEEeCCCCce-EEeec------------------------CCCCCCcEEE
Confidence 33345677888876552 445556667888887754321 11110 0112367899
Q ss_pred EccCCCe-EEEecCC-CeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCC
Q 048801 405 YNANGTV-FVTGSSD-TFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNS 482 (1715)
Q Consensus 405 fSpdG~~-LatGs~D-G~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s 482 (1715)
+.|.+.. +++-... +.|..+++..... .......-...+.|+|++.+
T Consensus 209 vdp~~g~ly~td~~~~~~I~r~~~dG~~~---------~~~~~~~~~~PnGlavd~~~---------------------- 257 (386)
T 3v65_B 209 LHPMEGTIYWTDWGNTPRIEASSMDGSGR---------RIIADTHLFWPNGLTIDYAG---------------------- 257 (386)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSCSC---------EEEECSSCSCEEEEEEEGGG----------------------
T ss_pred EEcCCCeEEEeccCCCCEEEEEeCCCCCc---------EEEEECCCCCeeeEEEeCCC----------------------
Confidence 9986554 4444444 6788888754211 11112223356788888754
Q ss_pred cccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEE
Q 048801 483 WFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA 562 (1715)
Q Consensus 483 ~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaT 562 (1715)
..++++-+..+.|..+++...... ..+.........|++ ..+.++++
T Consensus 258 ---~~lY~aD~~~~~I~~~d~dG~~~~-----------------------------~~~~~~~~~P~giav-~~~~ly~t 304 (386)
T 3v65_B 258 ---RRMYWVDAKHHVIERANLDGSHRK-----------------------------AVISQGLPHPFAITV-FEDSLYWT 304 (386)
T ss_dssp ---TEEEEEETTTTEEEEECTTSCSCE-----------------------------EEECSSCSSEEEEEE-ETTEEEEE
T ss_pred ---CEEEEEECCCCEEEEEeCCCCeeE-----------------------------EEEECCCCCceEEEE-ECCEEEEe
Confidence 245666667788888887631100 000011223456677 45556666
Q ss_pred EecCCeEEEEECCCCceEEEEecCCCCeEEEEE
Q 048801 563 AIMDCRICVWNAVDGSLVHSLTGHSASSYVLDV 595 (1715)
Q Consensus 563 gs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLaf 595 (1715)
....+.|..++..+|+.+..+.........|++
T Consensus 305 d~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 305 DWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp ETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred eCCCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 667788999997788777777644333344443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0024 Score=84.62 Aligned_cols=244 Identities=9% Similarity=-0.040 Sum_probs=127.2
Q ss_pred CeEEEEec-CCCCcceEEE-EecCC----CcEEEEecCCC-CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCccee
Q 048801 329 AVTAIAFS-PRPSAIYQLL-SSSDD----GTCRIWDARYS-QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQIL 401 (1715)
Q Consensus 329 ~VtsLafS-Pdg~~~~~La-SgS~D----GtVrIWDl~tg-~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vt 401 (1715)
.+..++|| |+++ +|+ +...+ ..|+++|+.++ +.+.. .+ .....
T Consensus 175 ~~~~~~~S~PDG~---~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--------~~-------------------~~~~~ 224 (751)
T 2xe4_A 175 DVMEVKPAPPEHD---LVAFSVDMSGNEVYTIEFKRISDPSQTIAD--------KV-------------------SGTNG 224 (751)
T ss_dssp EEEEEEECTTTTC---EEEEEEESSSSSCEEEEEEETTCTTCCCCC--------CE-------------------EEECS
T ss_pred EEeeeEecCCCCC---EEEEEEeCCCCceEEEEEEECCCCCEeCCc--------cc-------------------cCcee
Confidence 57789999 9998 344 22222 35999999887 52210 00 11134
Q ss_pred EEEEccCCCeEEEecCC-----CeEEEEeCCCCCccCCCCCceeeeeec-CCCCCeeEEEEccCcccccccccccccccc
Q 048801 402 CCAYNANGTVFVTGSSD-----TFARVWSACKSSVEDSEQPIHELDVLS-GHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 402 slafSpdG~~LatGs~D-----G~IrVWDl~t~~~~~~~~~~~~l~~l~-gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
.++|+|||+.|+....+ ..|.++++.++.. .....+. ........+.|+|++
T Consensus 225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~-------~~~lv~~~~~~~~~~~~~~SpDg--------------- 282 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQS-------EDVCLYEEHNPLFSAFMYKAADT--------------- 282 (751)
T ss_dssp CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGG-------GCEEEEECCCTTCEEEEEECTTS---------------
T ss_pred eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCch-------hcEEEEecCCCceEEEEEECCCC---------------
Confidence 68899999887776654 3577788765421 1111221 222345678899987
Q ss_pred cccccCCcccCceEEEEc---CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC-ccccc-CCCCCeeE
Q 048801 476 VPKFKNSWFCHDNIVTCS---RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP-RQRLL-PTPRGVNM 550 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS---~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~-~~~l~-~h~~~Vts 550 (1715)
+.|+..+ ....|.++|+.++.. .. ...+. ........
T Consensus 283 -----------~~l~~~~~~~~~~~l~~~d~~~~~~---------------------------~~~~~~l~~~~~~~~~s 324 (751)
T 2xe4_A 283 -----------NTLCIGSQSPETAEVHLLDLRKGNA---------------------------HNTLEIVRPREKGVRYD 324 (751)
T ss_dssp -----------SEEEEEEECSSCEEEEEEESSSCTT---------------------------CCCEEESSCCCTTCCEE
T ss_pred -----------CEEEEEecCCCCceEEEEECCCCCC---------------------------CceeEEeecCCCCceEE
Confidence 4444433 234566777764210 00 00111 11223344
Q ss_pred EEeCCCCCEEEEE-ecC----CeEEEEECCCCceEEE-EecCCCCeEEEEEccCCCcEEEEEeCCCcE--EEEEC-----
Q 048801 551 IVWSLDNRFVLAA-IMD----CRICVWNAVDGSLVHS-LTGHSASSYVLDVHPFNPRIAMSAGYDGRT--IVWDI----- 617 (1715)
Q Consensus 551 lafSPDG~~LaTg-s~D----GtI~IWDl~sg~~l~t-L~gH~~~V~sLafSP~dg~lLaSgs~DGtI--~VWDl----- 617 (1715)
+.|+. |..|+.. ..+ ..|.++++.++..... +..|...+.--.++++++.++++...+|.. .++++
T Consensus 325 ~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl~~~~~ 403 (751)
T 2xe4_A 325 VQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDG 403 (751)
T ss_dssp EEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEECCTTTS
T ss_pred Eeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEecccccc
Confidence 44443 5544443 333 3688888765322223 444444333233444567788888888864 45564
Q ss_pred --CCCceEEEEEcc-cceEEEEEE----cCCCCEEE-EEeCC---CeEEEEECCCCc
Q 048801 618 --WEGTPIRIYEIG-RFKLVDGKF----SPDGTSIV-LSDDV---GQIYLLNTGQGE 663 (1715)
Q Consensus 618 --~tgk~l~tl~~h-~~~V~svaf----SPDG~~LA-sgs~D---G~I~IWdl~tGe 663 (1715)
..++.+..+... ...+..+.+ ++++..|+ +.+.. +.|+.+++.+|+
T Consensus 404 ~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 404 VFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp CCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred cccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 344413333211 122333333 45666544 33322 578888887775
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0035 Score=83.05 Aligned_cols=116 Identities=10% Similarity=0.055 Sum_probs=77.5
Q ss_pred CCCC-CeEEEEEc-CCCCEEEEEeC-CC----cEEEEeCCCC-cEEE-EecCCCCCeEEEEECCCCCEEEEEeCC-----
Q 048801 241 GHRD-AVYCAIFD-RSGRFVITGSD-DR----LVKIWSMETA-FCLA-SCRGHEGDITDLAVSSNNTLVASASND----- 306 (1715)
Q Consensus 241 GH~~-~Vt~VafS-pDG~~LaTGS~-DG----tIrIWDl~tg-k~l~-tL~gHs~~VtsLafSpDg~lLASGS~D----- 306 (1715)
+|.- .+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+.. ....++|+|||+.|+....+
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCC
Confidence 4553 68889999 99999886543 23 5999999998 6321 1111 13467899999888877665
Q ss_pred CeeEEEECCCCCc--eEEEe-CCCCCeEEEEecCCCCcceEEEEec---CCCcEEEEecCCC
Q 048801 307 FVIRVWRLPDGLP--ISVLR-GHTGAVTAIAFSPRPSAIYQLLSSS---DDGTCRIWDARYS 362 (1715)
Q Consensus 307 GtIrVWDl~tg~~--l~~L~-gH~~~VtsLafSPdg~~~~~LaSgS---~DGtVrIWDl~tg 362 (1715)
..|.+|++.++.. ...+. .+......+.|+|+++ +|+..+ ....|.++|+.++
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~---~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTN---TLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSS---EEEEEEECSSCEEEEEEESSSC
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCC---EEEEEecCCCCceEEEEECCCC
Confidence 3688889887643 23333 2334567889999998 344332 3446777888765
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.2 Score=64.80 Aligned_cols=352 Identities=12% Similarity=0.008 Sum_probs=183.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCc
Q 048801 241 GHRDAVYCAIFDRSGRFVITGS-DDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP 319 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS-~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~ 319 (1715)
..-..-..|++++++..|..+. ..+.|...++..... ..+.........|++.. +.++++-...+.|...|..+|..
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 3455678999999877776664 467899999875433 34444444566888865 44445544578899999888876
Q ss_pred eEEEeCCCCCeEEEEe-cCC------------CC-cceEE-------EEecCCCcEEEEecCCCCCcc---eecCCCCCC
Q 048801 320 ISVLRGHTGAVTAIAF-SPR------------PS-AIYQL-------LSSSDDGTCRIWDARYSQYSP---RIYLPKPPD 375 (1715)
Q Consensus 320 l~~L~gH~~~VtsLaf-SPd------------g~-~~~~L-------aSgS~DGtVrIWDl~tg~~l~---~i~~~~~~~ 375 (1715)
...+.........|.. ++. +. ...++ .+.+..|.....|-. .+.. .+.+.. ..
T Consensus 241 ~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~--~C~~~~~~Ll~s~-~~ 317 (628)
T 4a0p_A 241 RTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNR--TCSAPTTFLLFSQ-KS 317 (628)
T ss_dssp CEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSS--CEECCSSEEEEEE-TT
T ss_pred eEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCC--cCccccceeeeec-cc
Confidence 6665543332333322 110 00 00011 111112211111100 0000 000000 00
Q ss_pred CccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecC------CC
Q 048801 376 AITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG------HE 448 (1715)
Q Consensus 376 ~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g------H~ 448 (1715)
.+...................-..+..++|.+... ++++=...+.|+.+++..... ...+.. ..
T Consensus 318 ~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~---------~~v~~~~~~~~~~~ 388 (628)
T 4a0p_A 318 AINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG---------FTVVVSSVPSQNLE 388 (628)
T ss_dssp EEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------EEEEC--------C
T ss_pred eEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc---------eEEEEccccccccc
Confidence 00000000000000000111224477899988554 444444567788887654211 111111 22
Q ss_pred CCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCC
Q 048801 449 NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPL 528 (1715)
Q Consensus 449 ~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~ 528 (1715)
..+..+++...+ .+++++-+..+.|.+.++.... .. .
T Consensus 389 ~~p~glAvD~~~-------------------------~nLY~td~~~~~I~v~~~~G~~-~~-------~---------- 425 (628)
T 4a0p_A 389 IQPYDLSIDIYS-------------------------RYIYWTCEATNVINVTRLDGRS-VG-------V---------- 425 (628)
T ss_dssp CCEEEEEEETTT-------------------------TEEEEEETTTTEEEEEETTSCE-EE-------E----------
T ss_pred CCcceEEeeccC-------------------------CeEEEEcCCCCEEEEEECCCCe-EE-------E----------
Confidence 356677776543 3566677778888888775311 00 0
Q ss_pred CCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEEEecCC--eEEEEECCCCceEEEE-ecCCCCeEEEEEccCCCcEEE
Q 048801 529 PPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLAAIMDC--RICVWNAVDGSLVHSL-TGHSASSYVLDVHPFNPRIAM 604 (1715)
Q Consensus 529 ~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaTgs~DG--tI~IWDl~sg~~l~tL-~gH~~~V~sLafSP~dg~lLa 604 (1715)
.+.......+.|++.| .|.++++-.... .|...++. |.....+ ...-...+.|++.+..+++.+
T Consensus 426 -----------l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~~l~~P~gla~D~~~~~LYw 493 (628)
T 4a0p_A 426 -----------VLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFSGLSKPIALALDSRLGKLFW 493 (628)
T ss_dssp -----------EEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred -----------EEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEeccCCCccEEEEeCCCCEEEE
Confidence 0011223578999999 555555543333 56666764 4434433 333456789999986677777
Q ss_pred EEeCCCcEEEEECCCCceEEEEE-cccceEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcc
Q 048801 605 SAGYDGRTIVWDIWEGTPIRIYE-IGRFKLVDGKFSPDGTSIVLSD-DVGQIYLLNTGQGES 664 (1715)
Q Consensus 605 Sgs~DGtI~VWDl~tgk~l~tl~-~h~~~V~svafSPDG~~LAsgs-~DG~I~IWdl~tGe~ 664 (1715)
+-+..+.|...++ .|.....+. ........+++.. ..|..++ ....|...+..+|+.
T Consensus 494 ~D~~~~~I~~~~~-dG~~r~~~~~~~~~~P~glav~~--~~ly~tD~~~~~i~~~~k~~G~~ 552 (628)
T 4a0p_A 494 ADSDLRRIESSDL-SGANRIVLEDSNILQPVGLTVFE--NWLYWIDKQQQMIEKIDMTGREG 552 (628)
T ss_dssp EETTTTEEEEEET-TSCSCEEEECSSCSCEEEEEEET--TEEEEEETTTTEEEEEETTSSSC
T ss_pred EeCCCCEEEEEeC-CCCceEEEEcCCCCCcEEEEEEC--CEEEEEECCCCeEEEEECcCCCC
Confidence 6666789999998 455555554 2233456666654 3455554 456788888777754
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.26 Score=63.73 Aligned_cols=352 Identities=10% Similarity=-0.069 Sum_probs=187.2
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEE-EEEeCCCeeEEEECCCCCceE
Q 048801 244 DAVYCAIFDRSGRFVITG-SDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV-ASASNDFVIRVWRLPDGLPIS 321 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTG-S~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lL-ASGS~DGtIrVWDl~tg~~l~ 321 (1715)
..+..|+|++.+..|+.+ ..++.|..+++........+.........|++.+.+..| ++-...+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 457899999876666554 457899999987654444444333457789998765544 555557889999986443333
Q ss_pred EEeCCCCCeEEEEecCCCCcceEEEEec--CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcc
Q 048801 322 VLRGHTGAVTAIAFSPRPSAIYQLLSSS--DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399 (1715)
Q Consensus 322 ~L~gH~~~VtsLafSPdg~~~~~LaSgS--~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~ 399 (1715)
.+...-....+|++.|... .|+.+. ..+.|...++..... ..+.. ....
T Consensus 117 l~~~~l~~P~~iavdp~~G---~lY~tD~g~~~~I~r~~~dG~~~-~~l~~-------------------------~~~~ 167 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEG---FMYWTEWGGKPKIDRAAMDGSER-TTLVP-------------------------NVGR 167 (628)
T ss_dssp EECSSCCCEEEEEEETTTT---EEEEEECSSSCEEEEEETTSCSC-EEEEC-------------------------SCSS
T ss_pred EEeCCCCCcccEEEccCCC---eEEEeCCCCCCEEEEEeCCCCce-EEEEC-------------------------CCCC
Confidence 3334445678999998665 343333 356677776654321 11110 1234
Q ss_pred eeEEEEccCCCeE-EEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccc
Q 048801 400 ILCCAYNANGTVF-VTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 400 VtslafSpdG~~L-atGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
...+++++++..| ++-...+.|..+++..... . .+.........|++..+
T Consensus 168 P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-------~---v~~~~l~~P~glav~~~------------------- 218 (628)
T 4a0p_A 168 ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-------E---VIADDLPHPFGLTQYQD------------------- 218 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------E---EEEECCSCEEEEEEETT-------------------
T ss_pred cceEEEccccCEEEEEECCCCEEEEEcCCCCce-------E---EeeccCCCceEEEEECC-------------------
Confidence 6789999975544 4445578899998864311 1 12222223345555432
Q ss_pred ccCCcccCceEEEEcCCCeEEEEecCCCccCccccc-cc-----ccccccCCCCCCCCCCCCCCCcccccCCC-CCeeEE
Q 048801 479 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGR-WT-----RAYHLKVPPPPLPPQPPRGGPRQRLLPTP-RGVNMI 551 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~-~~-----~~~~l~~~~~~~~~~~~~g~~~~~l~~h~-~~Vtsl 551 (1715)
..+++-...+.|...|..++.....+.. .. ..++-...+....-....+.+...-.... +...|.
T Consensus 219 --------~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~ 290 (628)
T 4a0p_A 219 --------YIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCG 290 (628)
T ss_dssp --------EEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEE
T ss_pred --------EEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEE
Confidence 3555655677787777665543222110 00 01110000000000000111110000001 122221
Q ss_pred E-----eCCCC-------CEEEEEecCCeEEEEECCCCce-EEEEec-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 552 V-----WSLDN-------RFVLAAIMDCRICVWNAVDGSL-VHSLTG-HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 552 a-----fSPDG-------~~LaTgs~DGtI~IWDl~sg~~-l~tL~g-H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
| +.+|+ .+|+.+. ...|+-..+..... -..+.. .-..+.+|+|.+.++.++++=...+.|+.+++
T Consensus 291 C~~g~~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~ 369 (628)
T 4a0p_A 291 CPAHYSLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQE 369 (628)
T ss_dssp CSTTCEECTTSSCEECCSSEEEEEE-TTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cCCCcEecccCCcCccccceeeeec-cceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEc
Confidence 1 11222 2344333 34455444432211 112221 22457899999877777777667788999987
Q ss_pred CCCceEEEEEc------ccceEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCc
Q 048801 618 WEGTPIRIYEI------GRFKLVDGKFSPDGTSIVLS-DDVGQIYLLNTGQGE 663 (1715)
Q Consensus 618 ~tgk~l~tl~~------h~~~V~svafSPDG~~LAsg-s~DG~I~IWdl~tGe 663 (1715)
........+.. .-..+..+++...++.|..+ ...+.|.+.++. |+
T Consensus 370 ~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~ 421 (628)
T 4a0p_A 370 DGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GR 421 (628)
T ss_dssp TSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SC
T ss_pred CCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CC
Confidence 54333333322 22357789999988777655 456788888874 43
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.046 Score=64.67 Aligned_cols=276 Identities=9% Similarity=0.060 Sum_probs=148.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec----CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR----GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL 318 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~----gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~ 318 (1715)
...+.+|.|.+++..+++ +.+|.| +...+.|+.-..+. .....+.+|.|.+ +..++ ++..+.|.. ..+.|+
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence 457999999888877775 456765 34444444322222 1244789999986 44444 445664443 333454
Q ss_pred ceEEEe---CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCC
Q 048801 319 PISVLR---GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL 395 (1715)
Q Consensus 319 ~l~~L~---gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~ 395 (1715)
.-..+. .+.+.+..|.+.+++. .++++ .+|.|..- ...++.-..+.. .
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~---~~~~~-~~g~v~~S-~DgG~tW~~~~~------------------------~ 160 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGS---AEMIT-NVGAIYRT-KDSGKNWQALVQ------------------------E 160 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTE---EEEEE-TTCCEEEE-SSTTSSEEEEEC------------------------S
T ss_pred CceECccccCCCCCeEEEEEECCCC---EEEEe-CCccEEEE-cCCCCCCEEeec------------------------C
Confidence 444332 2345678888876653 34444 45544221 112221111110 0
Q ss_pred CCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccc
Q 048801 396 QSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 396 h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
....+..+++.+++.+++++...+..+-+|-. +. ....+. ......+..+.+.+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~------tW~~~~--~~~~~~~~~~~~~~~g--------------- 216 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QT------AWEPHN--RTTSRRLHNMGFTPDG--------------- 216 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CS------SCEEEE--CCSSSCEEEEEECTTS---------------
T ss_pred CCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CC------ceeECC--CCCCCccceeEECCCC---------------
Confidence 12347889999999888877554434434421 11 122221 2334567788887754
Q ss_pred cccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC
Q 048801 476 VPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL 555 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP 555 (1715)
.++.++.+|.+.+.+.+.+. .|..... + -......+.++++.+
T Consensus 217 ------------~~~~~~~~G~~~~s~~D~G~------tW~~~~~---~----------------~~~~~~~~~~v~~~~ 259 (327)
T 2xbg_A 217 ------------RLWMIVNGGKIAFSDPDNSE------NWGELLS---P----------------LRRNSVGFLDLAYRT 259 (327)
T ss_dssp ------------CEEEEETTTEEEEEETTEEE------EECCCBC---T----------------TSSCCSCEEEEEESS
T ss_pred ------------CEEEEeCCceEEEecCCCCC------eeEeccC---C----------------cccCCcceEEEEecC
Confidence 44555667877766322111 1221100 0 001123578899998
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEEEec---CCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 556 DNRFVLAAIMDCRICVWNAVDGSLVHSLTG---HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl~sg~~l~tL~g---H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
++.+++++. ++.| ++....|+.-..+.. +...++++.|.+ ++. +++++.+|.|.-++-
T Consensus 260 ~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~-~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 260 PNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS-PDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp SSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE-TTE-EEEECSTTEEEEECC
T ss_pred CCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC-CCc-eEEEcCCceEEEEcC
Confidence 887777654 6666 455555655444442 345678898875 444 456678898776653
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.052 Score=64.22 Aligned_cols=273 Identities=10% Similarity=0.010 Sum_probs=144.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeC----CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecC
Q 048801 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRG----HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~g----H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
...+.+|.|.+++..+|+ +..|.| ++..+.|+.-..+.. ....+.+|.|.+ + .++.++..|.|.. ...
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~----~~~~~g~~g~i~~-S~D 106 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N----EGWIVGEPPIMLH-TTD 106 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T----EEEEEEETTEEEE-ESS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C----eEEEEECCCeEEE-ECC
Confidence 447899999887877775 456765 334444543333321 244688999976 2 2333455664443 222
Q ss_pred CCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCcee
Q 048801 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHE 440 (1715)
Q Consensus 361 tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~ 440 (1715)
.|+.-..+... ......+..+.+.+++..++++. +|.|.. ....+ .....
T Consensus 107 gG~tW~~~~~~----------------------~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG------~tW~~ 156 (327)
T 2xbg_A 107 GGQSWSQIPLD----------------------PKLPGSPRLIKALGNGSAEMITN-VGAIYR-TKDSG------KNWQA 156 (327)
T ss_dssp TTSSCEECCCC----------------------TTCSSCEEEEEEEETTEEEEEET-TCCEEE-ESSTT------SSEEE
T ss_pred CCCCceECccc----------------------cCCCCCeEEEEEECCCCEEEEeC-CccEEE-EcCCC------CCCEE
Confidence 23211111000 00112356777777777777664 454322 11111 11222
Q ss_pred eeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEE-EEecCCCccCcccccccccc
Q 048801 441 LDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAI-IWIPRSRRSHGKVGRWTRAY 519 (1715)
Q Consensus 441 l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIr-IWDl~t~~~~~~~~~~~~~~ 519 (1715)
+ ...+...+..+.+.+++ ..++.+ .+|.+. -+|-. +. .|...
T Consensus 157 ~--~~~~~~~~~~~~~~~~~--------------------------~~~~~g-~~G~~~~S~d~g-G~------tW~~~- 199 (327)
T 2xbg_A 157 L--VQEAIGVMRNLNRSPSG--------------------------EYVAVS-SRGSFYSTWEPG-QT------AWEPH- 199 (327)
T ss_dssp E--ECSCCCCEEEEEECTTS--------------------------CEEEEE-TTSSEEEEECTT-CS------SCEEE-
T ss_pred e--ecCCCcceEEEEEcCCC--------------------------cEEEEE-CCCcEEEEeCCC-CC------ceeEC-
Confidence 2 22344577888888754 345444 444443 33321 10 12111
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe-c---CCCCeEEEEE
Q 048801 520 HLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT-G---HSASSYVLDV 595 (1715)
Q Consensus 520 ~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~-g---H~~~V~sLaf 595 (1715)
.......+..+++++++.+++ ++.+|.|++++...|+.-..+. + +...+.++++
T Consensus 200 ---------------------~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~ 257 (327)
T 2xbg_A 200 ---------------------NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAY 257 (327)
T ss_dssp ---------------------ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEE
T ss_pred ---------------------CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEe
Confidence 011234678889999987665 5567888776533343322222 1 2245889999
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCceEEEEEc---ccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 596 HPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEI---GRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 596 SP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~---h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
.+ ++.+++++ .+|.| ++..+.|+.-..+.. ....+.++.|.+++. +++++.+|.|.-++
T Consensus 258 ~~-~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 258 RT-PNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp SS-SSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred cC-CCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 87 56666554 57767 455555654443332 234677888876554 66667788877665
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.018 Score=70.01 Aligned_cols=203 Identities=10% Similarity=-0.102 Sum_probs=121.2
Q ss_pred ceeEEEEccC-CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccc
Q 048801 399 QILCCAYNAN-GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 399 ~VtslafSpd-G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
.+..++|++. +.++++-...+.|..+++..... ...+.........+++.+.+
T Consensus 117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~---------~~~~~~~~~~p~glavd~~~----------------- 170 (386)
T 3v65_B 117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNV---------EEVVSTGLESPGGLAVDWVH----------------- 170 (386)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE---------EEEECSSCSCCCCEEEETTT-----------------
T ss_pred ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc---------EEEEeCCCCCccEEEEEeCC-----------------
Confidence 3788999974 55566666778899998865321 11111112233456665432
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
..++++-...+.|.+.++..... ...+.........|+++|.+
T Consensus 171 --------g~lY~~d~~~~~I~~~~~dg~~~-----------------------------~~l~~~~l~~P~giavdp~~ 213 (386)
T 3v65_B 171 --------DKLYWTDSGTSRIEVANLDGAHR-----------------------------KVLLWQSLEKPRAIALHPME 213 (386)
T ss_dssp --------TEEEEEETTTTEEEECBTTSCSC-----------------------------EEEECSSCSCEEEEEEETTT
T ss_pred --------CeEEEEcCCCCeEEEEeCCCCce-----------------------------EEeecCCCCCCcEEEEEcCC
Confidence 34556666677777776653110 00011122346889999877
Q ss_pred CEEEEEec-C-CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEE
Q 048801 558 RFVLAAIM-D-CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVD 635 (1715)
Q Consensus 558 ~~LaTgs~-D-GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~s 635 (1715)
.+|+.+.. . +.|..+++........+...-...+.|+|+|.++++.++-...+.|..+++........+.........
T Consensus 214 g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~g 293 (386)
T 3v65_B 214 GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFA 293 (386)
T ss_dssp TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEE
T ss_pred CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceE
Confidence 66655543 4 678888875433333333334457899999877788877777889999998644333333333334567
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 636 GKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 636 vafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
+++ ..+.++++-...+.|..++..+|+..
T Consensus 294 iav-~~~~ly~td~~~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 294 ITV-FEDSLYWTDWHTKSINSANKFTGKNQ 322 (386)
T ss_dssp EEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEE-ECCEEEEeeCCCCeEEEEECCCCcce
Confidence 777 33444445456678888886666544
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0043 Score=70.51 Aligned_cols=180 Identities=10% Similarity=0.001 Sum_probs=119.5
Q ss_pred eeEEEEccCCCeEEEecCC--CeEEEEeCCCCCccCCCCCceeeeeecCCCC-CeeEEEEccCccccccccccccccccc
Q 048801 400 ILCCAYNANGTVFVTGSSD--TFARVWSACKSSVEDSEQPIHELDVLSGHEN-DVNYVQFSGCAVASRSAMSDAFKEENV 476 (1715)
Q Consensus 400 VtslafSpdG~~LatGs~D--G~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~-~V~sLafspdg~as~~~~~~~~~~~~~ 476 (1715)
...+.|+. +.++.+.+.. ..|+++|+.++++ +..+.-... .-..+++..
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv---------~~~~~l~~~~fgeGi~~~~------------------ 74 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI---------LQRAEVPPPYFGAGIVAWR------------------ 74 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE---------EEEEECCTTCCEEEEEEET------------------
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCE---------EEEEeCCCCcceeEEEEeC------------------
Confidence 66888886 6666666665 4899999998754 222211111 112233322
Q ss_pred ccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC
Q 048801 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD 556 (1715)
Q Consensus 477 ~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD 556 (1715)
...++..-.++.+.+||..+.+....+. ....+ ..++++
T Consensus 75 ---------~~ly~ltw~~~~v~v~D~~tl~~~~ti~-----------------------------~~~~G---wglt~d 113 (243)
T 3mbr_X 75 ---------DRLIQLTWRNHEGFVYDLATLTPRARFR-----------------------------YPGEG---WALTSD 113 (243)
T ss_dssp ---------TEEEEEESSSSEEEEEETTTTEEEEEEE-----------------------------CSSCC---CEEEEC
T ss_pred ---------CEEEEEEeeCCEEEEEECCcCcEEEEEe-----------------------------CCCCc---eEEeeC
Confidence 2456666789999999998765443321 00111 233357
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEEecCC-----CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcc--
Q 048801 557 NRFVLAAIMDCRICVWNAVDGSLVHSLTGHS-----ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG-- 629 (1715)
Q Consensus 557 G~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~-----~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h-- 629 (1715)
+..|+++..++.|.++|..+.+.+.++.-.. ..++.+.|. ++++.+..-.+..|.+.|..+|+.+..+...
T Consensus 114 g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l 191 (243)
T 3mbr_X 114 DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQAL 191 (243)
T ss_dssp SSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGG
T ss_pred CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcC
Confidence 7777777778899999999999988876422 345667764 5677766667889999999999999998843
Q ss_pred ----------c-ceEEEEEEcCCCCEEEEEeC
Q 048801 630 ----------R-FKLVDGKFSPDGTSIVLSDD 650 (1715)
Q Consensus 630 ----------~-~~V~svafSPDG~~LAsgs~ 650 (1715)
. .-...+|++|+++.|++++.
T Consensus 192 ~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 192 VPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp STTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 1 13568999998887776654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.053 Score=63.76 Aligned_cols=205 Identities=9% Similarity=-0.060 Sum_probs=121.4
Q ss_pred ceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccc
Q 048801 399 QILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 399 ~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
.+..++|++.+ .++++-...+.|..+++..... .. .....+...-.....+++.+.+
T Consensus 31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~---~~--~~~~~~~~~~~~p~glavd~~~----------------- 88 (316)
T 1ijq_A 31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG---VS--SYDTVISRDIQAPDGLAVDWIH----------------- 88 (316)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC-------------CEEEECSSCSCCCEEEEETTT-----------------
T ss_pred ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC---Cc--ccEEEEeCCCCCcCEEEEeecC-----------------
Confidence 36789999865 5556666678999998864100 00 0011122222344667776432
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
...+++-...+.|.++++...... . .+.........++++|.+
T Consensus 89 --------~~ly~~d~~~~~I~~~~~~g~~~~-~----------------------------~~~~~~~~P~~iavdp~~ 131 (316)
T 1ijq_A 89 --------SNIYWTDSVLGTVSVADTKGVKRK-T----------------------------LFRENGSKPRAIVVDPVH 131 (316)
T ss_dssp --------TEEEEEETTTTEEEEEETTSSSEE-E----------------------------EEECTTCCEEEEEEETTT
T ss_pred --------CeEEEEECCCCEEEEEeCCCCceE-E----------------------------EEECCCCCcceEEeCCCC
Confidence 245566677888888887642100 0 000112346789999976
Q ss_pred CEEEEEecC--CeEEEEECCCCceEEEEe-cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcc---cc
Q 048801 558 RFVLAAIMD--CRICVWNAVDGSLVHSLT-GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG---RF 631 (1715)
Q Consensus 558 ~~LaTgs~D--GtI~IWDl~sg~~l~tL~-gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h---~~ 631 (1715)
..|+.+... +.|...++. |.....+. ..-.....|+++++++++.++-...+.|..+|+. |.....+... -.
T Consensus 132 g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d-g~~~~~~~~~~~~~~ 209 (316)
T 1ijq_A 132 GFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDEKRLA 209 (316)
T ss_dssp TEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEECTTTTS
T ss_pred CEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC-CCceEEEeecCCccC
Confidence 666555543 688888874 44444442 3345678999998777777777778899999986 4433434221 22
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 632 KLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 632 ~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
....+++. .+.++++-...+.|..++..+|+..
T Consensus 210 ~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 210 HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 242 (316)
T ss_dssp SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred CcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcce
Confidence 35567774 3444445556788999998777544
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.033 Score=63.85 Aligned_cols=205 Identities=10% Similarity=0.087 Sum_probs=130.0
Q ss_pred cceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec-CCCCCeeEEEEccCcccccccccccccccc
Q 048801 398 HQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS-GHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 398 ~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~-gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
..+..++|+|++. ++++...++.|...|.. +++ +..+. +-......|++.+++
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v---------~~~i~l~g~~D~EGIa~~~~g--------------- 81 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL---------IRTIPLDFVKDLETIEYIGDN--------------- 81 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE---------EEEEECSSCSSEEEEEECSTT---------------
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE---------EEEEecCCCCChHHeEEeCCC---------------
Confidence 4589999999765 55567778888888886 432 22221 112456777777654
Q ss_pred cccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC
Q 048801 476 VPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL 555 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP 555 (1715)
.++++.-.++.+.++++.....+.. .....+. . ...........|+|+|
T Consensus 82 -----------~~~vs~E~~~~l~~~~v~~~~~i~~----~~~~~~~---------------~-~~~~~N~g~EGLA~d~ 130 (255)
T 3qqz_A 82 -----------QFVISDERDYAIYVISLTPNSEVKI----LKKIKIP---------------L-QESPTNCGFEGLAYSR 130 (255)
T ss_dssp -----------EEEEEETTTTEEEEEEECTTCCEEE----EEEEECC---------------C-SSCCCSSCCEEEEEET
T ss_pred -----------EEEEEECCCCcEEEEEcCCCCeeee----eeeeccc---------------c-ccccccCCcceEEEeC
Confidence 4556666778888888765321000 0000000 0 0112355689999999
Q ss_pred CCCEEEEEecCCeEEEEECC---CCceEEEEe-------cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 048801 556 DNRFVLAAIMDCRICVWNAV---DGSLVHSLT-------GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI 625 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl~---sg~~l~tL~-------gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t 625 (1715)
.+..|+++.......||.+. ....+..+. .+...+.+++++|..+++++.......|.++|. +|+.+..
T Consensus 131 ~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~-~g~~~~~ 209 (255)
T 3qqz_A 131 QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTL-VGEVIGE 209 (255)
T ss_dssp TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECT-TCCEEEE
T ss_pred CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcC-CCCEEEE
Confidence 99877777765555555543 111222221 133456899999988888888888899999996 5777777
Q ss_pred EEcccc---------eEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 626 YEIGRF---------KLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 626 l~~h~~---------~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
+....+ ..-.|+|.++|+ |.++++...+++|.-.
T Consensus 210 ~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 210 MSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp EECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred EEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 664321 456899999998 5555777888888643
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.03 Score=69.21 Aligned_cols=155 Identities=8% Similarity=0.096 Sum_probs=93.5
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC---Ce-eEEEECCCCC
Q 048801 245 AVYCAIFDRS--GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND---FV-IRVWRLPDGL 318 (1715)
Q Consensus 245 ~Vt~VafSpD--G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D---Gt-IrVWDl~tg~ 318 (1715)
.-..|+|+|+ +..|+.+...+.|+.++..++..... ........+|+|+++|.++++.... .. +...+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568999985 44555554448999999987766544 3455668999999999955444321 12 3333322221
Q ss_pred c-eEEEeCCCCCeEEEEecC-CCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC
Q 048801 319 P-ISVLRGHTGAVTAIAFSP-RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396 (1715)
Q Consensus 319 ~-l~~L~gH~~~VtsLafSP-dg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h 396 (1715)
. ...+. .......+++.| ++. ++++-..++.|+.+|..++.....+.....
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~---lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~----------------------- 271 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGK---IYYTRYHHAMISSYDPATGTLTEEEVMMDT----------------------- 271 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCC---EEECBTTCSEEEEECTTTCCEEEEEEECSC-----------------------
T ss_pred ecccccc-ccCCCCEEEEeCCCCe---EEEEECCCCEEEEEECCCCeEEEEEeccCC-----------------------
Confidence 1 12222 234456788999 443 455556678899999876654222211000
Q ss_pred CcceeEEEEccCCC-eEEEecCCCeEEEEeCC
Q 048801 397 SHQILCCAYNANGT-VFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 397 ~~~VtslafSpdG~-~LatGs~DG~IrVWDl~ 427 (1715)
...-..++|+|+|+ ++++-...+.|+.++..
T Consensus 272 ~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 272 KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp CSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 01124699999998 55555667889998865
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.14 Score=60.12 Aligned_cols=237 Identities=11% Similarity=-0.017 Sum_probs=137.5
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEE-EEeCCCeeEEEECCC----CCceEEEeCCCCCeE
Q 048801 257 FVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVA-SASNDFVIRVWRLPD----GLPISVLRGHTGAVT 331 (1715)
Q Consensus 257 ~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLA-SGS~DGtIrVWDl~t----g~~l~~L~gH~~~Vt 331 (1715)
+|+.+. ...|+..++.+......+. ....+..++|++.+..|+ +-...+.|..+++.. ......+...-....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 344443 3568999998876655554 345678999998665555 445568999999876 222233332334567
Q ss_pred EEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCe
Q 048801 332 AIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTV 411 (1715)
Q Consensus 332 sLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~ 411 (1715)
.|++.+.+.. ++++-...+.|.+.++.... ...+.. ........+++.|.+..
T Consensus 81 glavd~~~~~--ly~~d~~~~~I~~~~~~g~~-~~~~~~------------------------~~~~~P~~iavdp~~g~ 133 (316)
T 1ijq_A 81 GLAVDWIHSN--IYWTDSVLGTVSVADTKGVK-RKTLFR------------------------ENGSKPRAIVVDPVHGF 133 (316)
T ss_dssp EEEEETTTTE--EEEEETTTTEEEEEETTSSS-EEEEEE------------------------CTTCCEEEEEEETTTTE
T ss_pred EEEEeecCCe--EEEEECCCCEEEEEeCCCCc-eEEEEE------------------------CCCCCcceEEeCCCCCE
Confidence 8999875552 44555667889999876432 111110 00123678999985554
Q ss_pred -EEEecCC-CeEEEEeCCCCCccCCCCCceeeeee-cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCce
Q 048801 412 -FVTGSSD-TFARVWSACKSSVEDSEQPIHELDVL-SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN 488 (1715)
Q Consensus 412 -LatGs~D-G~IrVWDl~t~~~~~~~~~~~~l~~l-~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~ 488 (1715)
+++.... +.|..+++.... ...+ ...-...+.|++++++ ..+
T Consensus 134 ly~~d~~~~~~I~~~~~dG~~----------~~~~~~~~~~~P~gla~d~~~-------------------------~~l 178 (316)
T 1ijq_A 134 MYWTDWGTPAKIKKGGLNGVD----------IYSLVTENIQWPNGITLDLLS-------------------------GRL 178 (316)
T ss_dssp EEEEECSSSCEEEEEETTSCC----------EEEEECSSCSCEEEEEEETTT-------------------------TEE
T ss_pred EEEEccCCCCeEEEEcCCCCC----------eEEEEECCCCCceEEEEeccC-------------------------CEE
Confidence 4444333 678888775321 1111 1223456788888754 245
Q ss_pred EEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCe
Q 048801 489 IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCR 568 (1715)
Q Consensus 489 LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGt 568 (1715)
+++-+..+.|..+|+..... ..+ ............+++. .+.++++-...+.
T Consensus 179 Y~~D~~~~~I~~~d~dg~~~-~~~--------------------------~~~~~~~~~P~giav~-~~~ly~~d~~~~~ 230 (316)
T 1ijq_A 179 YWVDSKLHSISSIDVNGGNR-KTI--------------------------LEDEKRLAHPFSLAVF-EDKVFWTDIINEA 230 (316)
T ss_dssp EEEETTTTEEEEEETTSCSC-EEE--------------------------EECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred EEEECCCCeEEEEecCCCce-EEE--------------------------eecCCccCCcEEEEEE-CCEEEEEECCCCe
Confidence 56666778899998864210 000 0000011234566664 4566666667788
Q ss_pred EEEEECCCCceEEEEec
Q 048801 569 ICVWNAVDGSLVHSLTG 585 (1715)
Q Consensus 569 I~IWDl~sg~~l~tL~g 585 (1715)
|..++..+|+.+..+..
T Consensus 231 V~~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 231 IFSANRLTGSDVNLLAE 247 (316)
T ss_dssp EEEEETTTCCCCEEEEC
T ss_pred EEEEeCCCCcceEEEec
Confidence 99999888877666653
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.047 Score=62.54 Aligned_cols=226 Identities=11% Similarity=0.034 Sum_probs=134.6
Q ss_pred EEecCCCCCeEEEEECCCCCEEE-EEeCCCeeEEEECCCCCceEEEe-CCCCCeEEEEecCCCCcceEEEEecCCCcEEE
Q 048801 279 ASCRGHEGDITDLAVSSNNTLVA-SASNDFVIRVWRLPDGLPISVLR-GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356 (1715)
Q Consensus 279 ~tL~gHs~~VtsLafSpDg~lLA-SGS~DGtIrVWDl~tg~~l~~L~-gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrI 356 (1715)
+.+.+-...+..|+|+|++..|+ +...++.|...|+. ++.++.+. +-....-.|++.+++. ++++.-.++.+.+
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~---~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQ---FVISDERDYAIYV 95 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTE---EEEEETTTTEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCE---EEEEECCCCcEEE
Confidence 35667777899999999766554 56778899999987 88887774 2235688899988775 5566666788999
Q ss_pred EecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCC
Q 048801 357 WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQ 436 (1715)
Q Consensus 357 WDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~ 436 (1715)
+++.....+..+..... .......+..+..++|+|.++.|.++.......||.+.. .. . ..
T Consensus 96 ~~v~~~~~i~~~~~~~~----------------~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g-~~-~-~~ 156 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKI----------------PLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG-LL-S-SN 156 (255)
T ss_dssp EEECTTCCEEEEEEEEC----------------CCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES-TT-C-SS
T ss_pred EEcCCCCeeeeeeeecc----------------ccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc-cc-c-CC
Confidence 98865442111110000 000112345588999999997777777665556666541 10 0 00
Q ss_pred Cceeeee----ecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccc
Q 048801 437 PIHELDV----LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKV 512 (1715)
Q Consensus 437 ~~~~l~~----l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~ 512 (1715)
....+.. -..+...+.+++++|.. +.+++.......|.++|.... ...
T Consensus 157 ~l~i~~~~~~~~~~~~~d~S~l~~dp~t-------------------------g~lliLS~~s~~L~~~d~~g~-~~~-- 208 (255)
T 3qqz_A 157 ELHISKDKALQRQFTLDDVSGAEFNQQK-------------------------NTLLVLSHESRALQEVTLVGE-VIG-- 208 (255)
T ss_dssp CCEEEECHHHHHTCCSSCCCEEEEETTT-------------------------TEEEEEETTTTEEEEECTTCC-EEE--
T ss_pred ceeeecchhhccccccCCceeEEEcCCC-------------------------CeEEEEECCCCeEEEEcCCCC-EEE--
Confidence 1111100 01123456788888864 467777888888888887642 111
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEEC
Q 048801 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 574 (1715)
Q Consensus 513 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl 574 (1715)
.+.+.- ....+...-..-..|+|.++|++.++ +.-+.++++.-
T Consensus 209 -----~~~L~~-------------g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 209 -----EMSLTK-------------GSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp -----EEECST-------------TGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred -----EEEcCC-------------ccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 111110 00001111234678999999985554 66667777654
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.35 E-value=0.34 Score=66.91 Aligned_cols=111 Identities=15% Similarity=0.087 Sum_probs=70.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEe-cCCCCCeEEEEECCC------CCEEEEEeC-CCeeEEEECCC
Q 048801 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASC-RGHEGDITDLAVSSN------NTLVASASN-DFVIRVWRLPD 316 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL-~gHs~~VtsLafSpD------g~lLASGS~-DGtIrVWDl~t 316 (1715)
.|.+++... .+|+.++ .+.|.++.+..+.+.... ..-...|.|+++.+. +.++|.|++ |++|+|+++.+
T Consensus 515 ~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 515 NISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred EEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 466555543 3566665 577888887765432211 123568999999863 479999997 99999999987
Q ss_pred CCceEEEeC-CCCCeEEEEecCCCCcceEEEEecCCCcEEEEec
Q 048801 317 GLPISVLRG-HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359 (1715)
Q Consensus 317 g~~l~~L~g-H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl 359 (1715)
.+.+....- ......++.+..-+.. .+|..|-.||.+.-+.+
T Consensus 592 l~~~~~~~L~~~~~p~si~l~~~~~~-~~L~igl~dG~l~~~~~ 634 (1158)
T 3ei3_A 592 FELLHKEMLGGEIIPRSILMTTFESS-HYLLCALGDGALFYFGL 634 (1158)
T ss_dssp CCEEEEEECCSSCCEEEEEEEEETTE-EEEEEEETTSEEEEEEE
T ss_pred CCeEEEEECCCCCCCcEEEEEEeCCC-cEEEEEeCCCeEEEEEE
Confidence 766544321 1224445544432222 37889999998866654
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.96 Score=59.50 Aligned_cols=335 Identities=11% Similarity=0.095 Sum_probs=181.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEe-cC----CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASC-RG----HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG 317 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL-~g----Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg 317 (1715)
...|.++..+.+|.+.+ |+..| |..++..+++..... .. ....|.++....++..|..|+. +-|..++..++
T Consensus 145 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~ 221 (758)
T 3ott_A 145 NNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG 221 (758)
T ss_dssp CSCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred CCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence 35688998888887655 44444 777887766543221 11 1234888988877765555554 45788887766
Q ss_pred CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCC
Q 048801 318 LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQS 397 (1715)
Q Consensus 318 ~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~ 397 (1715)
.......-....|.++....++. |..|+.+ -|.+++..++.... +.... ........
T Consensus 222 ~~~~~~~l~~~~i~~i~~d~~g~----lWigT~~-Gl~~~~~~~~~~~~-~~~~~-----------------~~~~~l~~ 278 (758)
T 3ott_A 222 QIKQTEAFHNNSIKSLALDGNGD----LLAGTDN-GLYVYHNDTTPLQH-IIHDS-----------------RNIQSLTN 278 (758)
T ss_dssp EEEEEEEEEEEEEEEEEECTTCC----EEEEETT-EEEEECCTTSCCEE-ECCCT-----------------TCTTSCSC
T ss_pred eEEeccCCCCCeEEEEEEcCCCC----EEEEeCC-ceeEEecCCCcEEE-EEcCC-----------------CCcCcCCc
Confidence 43221111234588888777764 4555544 47788876554321 11100 00011234
Q ss_pred cceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee--e--cCCCCCeeEEEEccCcccccccccccccc
Q 048801 398 HQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV--L--SGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 398 ~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~--l--~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
..|.++....+|.+-+ |+..| +.++.... . ...... . ......|.++....++
T Consensus 279 ~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~-~-------~~~~~~~~~~~~~~~~~v~~i~~D~~g------------- 335 (758)
T 3ott_A 279 NIIWNIFADQEHNIWL-GTDYG-ISLSRYNS-A-------LQFIPISQITGTGDGNQFYSLFRDSKG------------- 335 (758)
T ss_dssp SCEEEEEECTTCCEEE-EESSS-EEEECCCC---------CEEEEHHHHSCSCCCCBEEEEEECTTC-------------
T ss_pred CeEEEEEEcCCCCEEE-EeCCc-ccccccCC-c-------eeEEecccCCCCCCCceEEEEEEcCCC-------------
Confidence 5689999888887544 55556 54443211 1 111100 0 0112356666665543
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW 553 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf 553 (1715)
.|..|+.+| +..++..++.... + ..+... ... ..-....|.++.-
T Consensus 336 --------------~lWiGt~~G-l~~~~~~~~~~~~-~----~~~~~~-------------~~~--~~l~~~~v~~i~~ 380 (758)
T 3ott_A 336 --------------FYWFGGANG-LIRFTDPAGERHD-A----IWYRMG-------------DKT--YPLSHNRIRHIYE 380 (758)
T ss_dssp --------------CEEEEETTE-EEEESCTTSSCCC-C----EEECTT-------------CSS--SCCSCSCEEEEEE
T ss_pred --------------CEEEeeCCc-ceeecccccccce-e----EEeccC-------------CcC--CCCCCCceEEEEE
Confidence 455555554 5556554321100 0 000000 000 0011245888888
Q ss_pred CCCCCEEEEEecCCeEEEEECCCCceEEEEe-c-----CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-----Cce
Q 048801 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLT-G-----HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE-----GTP 622 (1715)
Q Consensus 554 SPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~-g-----H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t-----gk~ 622 (1715)
..+|.+.+ |+ ++-|.+|+..+++...... . ....|.++.... ++.+. .|+..+-|.++|..+ +..
T Consensus 381 d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lW-igT~~~Gl~~~~~~~~~~~~~~~ 456 (758)
T 3ott_A 381 DKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQLW-ISTCLGGIFVVDKHKLMQSTSGQ 456 (758)
T ss_dssp CTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSEEE-EEESSSCEEEEEHHHHHHCCSSE
T ss_pred CCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCCEE-EEECCCceEEEccccccccCCcc
Confidence 88887554 55 4579999988876543221 1 234578887765 44444 466666688888542 111
Q ss_pred E---EEEEc----ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 623 I---RIYEI----GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 623 l---~tl~~----h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
. ..+.. ....|.++...++|.+-+.++..+.|..++..+++..
T Consensus 457 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~ 506 (758)
T 3ott_A 457 YIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVT 506 (758)
T ss_dssp EECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEE
T ss_pred eecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceE
Confidence 2 12221 1224888999999997764444566888998776533
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.019 Score=70.91 Aligned_cols=154 Identities=7% Similarity=0.074 Sum_probs=97.1
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC-CC----eeEEEECCCCC
Q 048801 245 AVYCAIFDR-SGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN-DF----VIRVWRLPDGL 318 (1715)
Q Consensus 245 ~Vt~VafSp-DG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~-DG----tIrVWDl~tg~ 318 (1715)
....|+++| ++..|+.+...+.|+.+|+.++....... .......|+|+++|++|+.+.. .+ .+.+.+ ..+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCc
Confidence 457889998 45566666555889999998766544433 5566889999999996666654 22 233333 3343
Q ss_pred ce--EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC
Q 048801 319 PI--SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396 (1715)
Q Consensus 319 ~l--~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h 396 (1715)
.. ..+. .......+++.|++.. ++++-..++.|..++..++......... .
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~------------------------~ 268 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQ------------------------D 268 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECS------------------------S
T ss_pred eeeeeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcC------------------------C
Confidence 32 3333 2234577889994332 5556667788999998755421111110 0
Q ss_pred CcceeEEEEccCCC-eEEEecCCCeEEEEeCC
Q 048801 397 SHQILCCAYNANGT-VFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 397 ~~~VtslafSpdG~-~LatGs~DG~IrVWDl~ 427 (1715)
......++|+|+|+ ++++-...+.|..++..
T Consensus 269 ~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 269 SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp SSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 12357899999999 55555667889998765
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.24 E-value=0.22 Score=60.75 Aligned_cols=244 Identities=10% Similarity=-0.061 Sum_probs=143.3
Q ss_pred EEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCC---cceecCCCCCC
Q 048801 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQY---SPRIYLPKPPD 375 (1715)
Q Consensus 299 lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~---l~~i~~~~~~~ 375 (1715)
+|+.+. ...|+..++........+. ....+.+|+|.+.... ++++-...+.|..+++..... ...+.
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~--lywsD~~~~~I~~~~~~g~~~~~~~~~~~------ 154 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNR--IYWSDLSQRMICSTQLDRAHGVSSYDTVI------ 154 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTE--EEEEETTTTEEEEEEC------CCCEEEE------
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCc--eEEEecCCCeEEEEEcccCCCCCcceEEE------
Confidence 444443 4688888987665555444 4567899999987652 445555678888888764220 00100
Q ss_pred CccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEE
Q 048801 376 AITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV 454 (1715)
Q Consensus 376 ~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sL 454 (1715)
.........+++.+ .+.++++-...+.|.+.++.... ....+.........|
T Consensus 155 ------------------~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~---------~~~l~~~~~~~P~~i 207 (400)
T 3p5b_L 155 ------------------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---------RKTLFRENGSKPRAI 207 (400)
T ss_dssp ------------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS---------EEEEEECSSCCEEEE
T ss_pred ------------------eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc---------eEEEEeCCCCCcceE
Confidence 00122467889987 56666666678899999886431 111222233356788
Q ss_pred EEccCcccccccccccccccccccccCCcccCceEEEEcC-CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCC
Q 048801 455 QFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR-DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPP 533 (1715)
Q Consensus 455 afspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~-DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 533 (1715)
++.|.+ +.++++-.. .+.|...++....
T Consensus 208 avdp~~-------------------------g~ly~td~~~~~~I~~~~~dG~~-------------------------- 236 (400)
T 3p5b_L 208 VVDPVH-------------------------GFMYWTDWGTPAKIKKGGLNGVD-------------------------- 236 (400)
T ss_dssp EEETTT-------------------------TEEEEEECSSSCCEEEEETTSCS--------------------------
T ss_pred EEeccc-------------------------CeEEEEeCCCCCEEEEEeCCCCc--------------------------
Confidence 888753 123333322 3567666665311
Q ss_pred CCCCcccc-cCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCceEEEEec--CCCCeEEEEEccCCCcEEEEEeCC
Q 048801 534 RGGPRQRL-LPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSLVHSLTG--HSASSYVLDVHPFNPRIAMSAGYD 609 (1715)
Q Consensus 534 ~g~~~~~l-~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~~l~tL~g--H~~~V~sLafSP~dg~lLaSgs~D 609 (1715)
...+ ...-...+.|++++++..|+.+. ..+.|..+|+........+.. .-....+|++ +++.++++-...
T Consensus 237 ----~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~~~ 310 (400)
T 3p5b_L 237 ----IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIIN 310 (400)
T ss_dssp ----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEEESSS
T ss_pred ----cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEecCCC
Confidence 0011 11123568899998777766654 467899999865433333332 2334567777 356777787788
Q ss_pred CcEEEEECCCCceEEEEEcccceEEEE
Q 048801 610 GRTIVWDIWEGTPIRIYEIGRFKLVDG 636 (1715)
Q Consensus 610 GtI~VWDl~tgk~l~tl~~h~~~V~sv 636 (1715)
+.|..+|..+|+.+..+........++
T Consensus 311 ~~V~~~~~~~G~~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 311 EAIFSANRLTGSDVNLLAENLLSPEDM 337 (400)
T ss_dssp CSEEEEESSSCCCCEEEECSCSCEEEE
T ss_pred CeEEEEEcCCCCceEEEecCCCCCceE
Confidence 899999988888777776433334443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.22 E-value=0.083 Score=62.40 Aligned_cols=202 Identities=8% Similarity=-0.113 Sum_probs=122.0
Q ss_pred ceeEEEEccC-CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccc
Q 048801 399 QILCCAYNAN-GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 399 ~VtslafSpd-G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
.+..++|++. +.++++-...+.|..+++..... ....+...-.....+++.+.+
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~--------~~~~~~~~l~~p~glavd~~~----------------- 90 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES--------VQNVVVSGLLSPDGLACDWLG----------------- 90 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC--------CCEEEEECCSCCCEEEEETTT-----------------
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc--------eEEEEcCCCCCccEEEEEcCC-----------------
Confidence 3678899884 55666666778899998865321 001111112234566666532
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
+.++++-...+.|.++++...... ............+++.|.+
T Consensus 91 --------g~ly~~d~~~~~I~~~~~dG~~~~-----------------------------~l~~~~~~~P~giavdp~~ 133 (318)
T 3sov_A 91 --------EKLYWTDSETNRIEVSNLDGSLRK-----------------------------VLFWQELDQPRAIALDPSS 133 (318)
T ss_dssp --------TEEEEEETTTTEEEEEETTSCSCE-----------------------------EEECSSCSSEEEEEEEGGG
T ss_pred --------CeEEEEECCCCEEEEEECCCCcEE-----------------------------EEEeCCCCCccEEEEeCCC
Confidence 356666667788888887642100 0001122346789999876
Q ss_pred CEEEEEec--CCeEEEEECCCCceEEEE-ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEc-ccceE
Q 048801 558 RFVLAAIM--DCRICVWNAVDGSLVHSL-TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEI-GRFKL 633 (1715)
Q Consensus 558 ~~LaTgs~--DGtI~IWDl~sg~~l~tL-~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~-h~~~V 633 (1715)
.+|+.+.. .+.|...++. |.....+ ...-...+.|+++++++++.++-...+.|..+|+.. .....+.. .....
T Consensus 134 g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P 211 (318)
T 3sov_A 134 GFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHP 211 (318)
T ss_dssp TEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSCCSCE
T ss_pred CEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC-CceEEEecCCCCCc
Confidence 66665553 5788888875 4333333 333345689999997777877777788999999854 33333332 23345
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 634 VDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 634 ~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
..+++.. +.++.+-...+.|..++..+|+..
T Consensus 212 ~glav~~-~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 212 FALTLFE-DILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp EEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred eEEEEeC-CEEEEEecCCCeEEEEECCCCCce
Confidence 5677643 333334445678999998777644
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.17 E-value=0.28 Score=59.68 Aligned_cols=248 Identities=9% Similarity=-0.032 Sum_probs=144.2
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEE-eCCCeeEEEECCCC----CceEEEeCCCCCeE
Q 048801 257 FVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASA-SNDFVIRVWRLPDG----LPISVLRGHTGAVT 331 (1715)
Q Consensus 257 ~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASG-S~DGtIrVWDl~tg----~~l~~L~gH~~~Vt 331 (1715)
+|+.+. ...|+..++........+. ....+..|+|++.+..|+.+ ...+.|..+++... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 555554 3688888988765544444 45678899999866555554 45688999998652 23344443455678
Q ss_pred EEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCe
Q 048801 332 AIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTV 411 (1715)
Q Consensus 332 sLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~ 411 (1715)
.|++.+.+.. ++++-...+.|.+.++........+. ........|++.|.+..
T Consensus 163 glavD~~~~~--lY~~d~~~~~I~~~~~~g~~~~~l~~-------------------------~~~~~P~~iavdp~~g~ 215 (400)
T 3p5b_L 163 GLAVDWIHSN--IYWTDSVLGTVSVADTKGVKRKTLFR-------------------------ENGSKPRAIVVDPVHGF 215 (400)
T ss_dssp EEEEETTTTE--EEEEETTTTEEEEECTTTCSEEEEEE-------------------------CSSCCEEEEEEETTTTE
T ss_pred cEEEEecCCc--eEEEECCCCeEEEEeCCCCceEEEEe-------------------------CCCCCcceEEEecccCe
Confidence 8999885542 45555667888888876443211110 01223678999986554
Q ss_pred EEEec-C-CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceE
Q 048801 412 FVTGS-S-DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNI 489 (1715)
Q Consensus 412 LatGs-~-DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~L 489 (1715)
|.... . .+.|...++..... .......-...+.|++++.+ ..++
T Consensus 216 ly~td~~~~~~I~~~~~dG~~~---------~~~~~~~l~~P~glavd~~~-------------------------~~lY 261 (400)
T 3p5b_L 216 MYWTDWGTPAKIKKGGLNGVDI---------YSLVTENIQWPNGITLDLLS-------------------------GRLY 261 (400)
T ss_dssp EEEEECSSSCCEEEEETTSCSC---------EEEECSSCSCEEEEEEETTT-------------------------TEEE
T ss_pred EEEEeCCCCCEEEEEeCCCCcc---------EEEEECCCCceEEEEEEeCC-------------------------CEEE
Confidence 44433 2 46788888764211 11122223456788888754 2455
Q ss_pred EEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeE
Q 048801 490 VTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRI 569 (1715)
Q Consensus 490 aSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI 569 (1715)
++-+..+.|..+|+...... .+ ............|++ ..+.++++....+.|
T Consensus 262 ~aD~~~~~I~~~d~dG~~~~-~~--------------------------~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V 313 (400)
T 3p5b_L 262 WVDSKLHSISSIDVNGGNRK-TI--------------------------LEDEKRLAHPFSLAV-FEDKVFWTDIINEAI 313 (400)
T ss_dssp EEETTTTEEEEEETTSCCCE-EE--------------------------EECSSTTSSEEEEEE-ETTEEEEEESSSCSE
T ss_pred EEECCCCEEEEEeCCCCccE-EE--------------------------EeCCCCCCCCEEEEE-eCCEEEEecCCCCeE
Confidence 55566778888887642110 00 000001122345565 244555666667889
Q ss_pred EEEECCCCceEEEEecCCCCeEEEEE
Q 048801 570 CVWNAVDGSLVHSLTGHSASSYVLDV 595 (1715)
Q Consensus 570 ~IWDl~sg~~l~tL~gH~~~V~sLaf 595 (1715)
..++..+|+.+..+.........|.+
T Consensus 314 ~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 314 FSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp EEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred EEEEcCCCCceEEEecCCCCCceEEE
Confidence 99998888877777654444455543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.16 E-value=0.13 Score=60.81 Aligned_cols=231 Identities=9% Similarity=-0.057 Sum_probs=135.6
Q ss_pred CCeeEEEECCCCC-ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 306 DFVIRVWRLPDGL-PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 306 DGtIrVWDl~tg~-~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
...|+..++.... ....+......+.+|+|.+.... ++++-...+.|..+++..+.....+..
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~--lyw~D~~~~~I~r~~~~g~~~~~~~~~-------------- 75 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGL--IYWSDVSEEAIKRTEFNKTESVQNVVV-------------- 75 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTE--EEEEETTTTEEEEEETTSSSCCCEEEE--------------
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCE--EEEEECCCCcEEEEEccCCCceEEEEc--------------
Confidence 4579999987663 12222222345678999986552 455656678888888875532111100
Q ss_pred CCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccc
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVAS 463 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as 463 (1715)
..-.....+++.+ .+.++++-...+.|.++++..... ...+.........+++.|.+
T Consensus 76 ----------~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---------~~l~~~~~~~P~giavdp~~--- 133 (318)
T 3sov_A 76 ----------SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR---------KVLFWQELDQPRAIALDPSS--- 133 (318)
T ss_dssp ----------ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------EEEECSSCSSEEEEEEEGGG---
T ss_pred ----------CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE---------EEEEeCCCCCccEEEEeCCC---
Confidence 0012256788886 556666666778999999864311 11122333456788888753
Q ss_pred cccccccccccccccccCCcccCceEEEEc-CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc-
Q 048801 464 RSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL- 541 (1715)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l- 541 (1715)
+.++++-. ..+.|...++.... ...+
T Consensus 134 ----------------------g~ly~td~~~~~~I~r~~~dG~~------------------------------~~~~~ 161 (318)
T 3sov_A 134 ----------------------GFMYWTDWGEVPKIERAGMDGSS------------------------------RFIII 161 (318)
T ss_dssp ----------------------TEEEEEECSSSCEEEEEETTSCS------------------------------CEEEE
T ss_pred ----------------------CEEEEEecCCCCEEEEEEcCCCC------------------------------eEEEE
Confidence 12333332 34667777665311 0001
Q ss_pred cCCCCCeeEEEeCCCCCEEEEE-ecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC
Q 048801 542 LPTPRGVNMIVWSLDNRFVLAA-IMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 542 ~~h~~~VtslafSPDG~~LaTg-s~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
...-...+.|+|++++..|+.+ +..+.|..+++........+.+......++++. .+.++++-...+.|..++..+|
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEecCCCeEEEEECCCC
Confidence 0112345789999976666555 456789999986433333333344556778774 4567777777889999999888
Q ss_pred ceEEEEEc
Q 048801 621 TPIRIYEI 628 (1715)
Q Consensus 621 k~l~tl~~ 628 (1715)
+.+..+..
T Consensus 240 ~~~~~i~~ 247 (318)
T 3sov_A 240 EGLREIHS 247 (318)
T ss_dssp CSCEEEEC
T ss_pred CceEEEeC
Confidence 87766653
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.064 Score=66.14 Aligned_cols=257 Identities=7% Similarity=-0.031 Sum_probs=140.8
Q ss_pred CeEEEEECC-CCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecC-CC---cEEEEecCC
Q 048801 287 DITDLAVSS-NNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD-DG---TCRIWDARY 361 (1715)
Q Consensus 287 ~VtsLafSp-Dg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~-DG---tVrIWDl~t 361 (1715)
....|+|+| ++..|+.+...+.|+++|+..+... .+.........|+|++++. .|+.+.. ++ ...+|-...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~---~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEAD---SMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSS---EEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCC---EEEEEeCCCCcccceEEEEeCC
Confidence 457899998 4556666655588999998766543 4444556688999999987 4444433 22 122332233
Q ss_pred CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCcee
Q 048801 362 SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHE 440 (1715)
Q Consensus 362 g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~ 440 (1715)
+.......+ ........++++| +|.++++-..++.|..|+..++.. ..
T Consensus 214 g~~~~~~~l------------------------~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~-------~~ 262 (430)
T 3tc9_A 214 SGFKVITEL------------------------TKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET-------TP 262 (430)
T ss_dssp GTSCSEEEE------------------------EECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE-------EE
T ss_pred Cceeeeeee------------------------ccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE-------EE
Confidence 322210000 0012356788999 778777777788999999875321 01
Q ss_pred eeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCc-eEEEEcCCCeEEEEecCCCc-cCccccccccc
Q 048801 441 LDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHD-NIVTCSRDGSAIIWIPRSRR-SHGKVGRWTRA 518 (1715)
Q Consensus 441 l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~-~LaSgS~DGsIrIWDl~t~~-~~~~~~~~~~~ 518 (1715)
+.... .......++|+|++ + ++++-...+.|..++..... .......+...
T Consensus 263 ~~~~~-~~~~P~gia~~pdG--------------------------~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~ 315 (430)
T 3tc9_A 263 LFTIQ-DSGWEFHIQFHPSG--------------------------NYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQ 315 (430)
T ss_dssp EEECS-SSSCCEEEEECTTS--------------------------SEEEEEETTTTEEEEEEEETTTTEECCCEEEEEC
T ss_pred EEEcC-CCCcceeEEEcCCC--------------------------CEEEEEECCCCEEEEEeCCcccccccceEEEecc
Confidence 11111 12346789999986 4 56666778889998765311 00000000000
Q ss_pred ccccCCCCCCCCCCCCCCCcccccCCCCCee-EEEeC--------CCCCEEEEEecCCeEEEEECCCCceEEEEec----
Q 048801 519 YHLKVPPPPLPPQPPRGGPRQRLLPTPRGVN-MIVWS--------LDNRFVLAAIMDCRICVWNAVDGSLVHSLTG---- 585 (1715)
Q Consensus 519 ~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vt-slafS--------PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g---- 585 (1715)
. .... ...+ . .....-.... .+++. ++|.++++-...+.|+.++ .+|........
T Consensus 316 ~----g~~g----~~dg-~--~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~ 383 (430)
T 3tc9_A 316 Q----GAKD----WVDG-V--GKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNG 383 (430)
T ss_dssp T----TCBC----CBCE-E--GGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTS
T ss_pred C----CCCC----CCCC-C--CcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCC
Confidence 0 0000 0000 0 0000011122 45553 4566777666778899988 45654333321
Q ss_pred C----C---------CCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 586 H----S---------ASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 586 H----~---------~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
. . .....|++.|+++.++++-...++|+.+++
T Consensus 384 ~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 384 TSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp SSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 0 1 146788888855677777666777887765
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.08 E-value=0.59 Score=64.60 Aligned_cols=129 Identities=18% Similarity=0.206 Sum_probs=74.3
Q ss_pred CCEEEEEe----------cCCeEEEEECCCCceEEEE-ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 048801 557 NRFVLAAI----------MDCRICVWNAVDGSLVHSL-TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI 625 (1715)
Q Consensus 557 G~~LaTgs----------~DGtI~IWDl~sg~~l~tL-~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t 625 (1715)
..+|++|+ ..|.|++|++..+++.... ....+.|++|+-- +++++++. ..+|+||++...+.++
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla~i--g~~l~vy~l~~~~~L~- 918 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLASI--NSTVRLYEWTTEKELR- 918 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEEEE--TTEEEEEEECTTSCEE-
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEEEc--CCEEEEEECCCCceEE-
Confidence 46788776 3578999998755433222 2346778887643 56666544 4789999998766554
Q ss_pred EEc-ccceEEEEEEcCCCCEEEEEeCCCeEEEEE--CCCCcccc---cc----ccceeecCCCccEEEcCCCCee
Q 048801 626 YEI-GRFKLVDGKFSPDGTSIVLSDDVGQIYLLN--TGQGESQK---DA----KYDQFFLGDYRPLIRDSLGNVL 690 (1715)
Q Consensus 626 l~~-h~~~V~svafSPDG~~LAsgs~DG~I~IWd--l~tGe~~k---~~----~~~~~fs~D~r~L~~d~~g~vl 690 (1715)
... +...|..+...-.|.++++|+.-..|.++. ...++... +. .....|..+...+..|..|++.
T Consensus 919 ~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~ 993 (1158)
T 3ei3_A 919 TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLF 993 (1158)
T ss_dssp EEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEE
T ss_pred EEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEE
Confidence 221 111233333334678999999887777754 33333221 11 1122344344455566666654
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.19 Score=61.99 Aligned_cols=257 Identities=9% Similarity=0.043 Sum_probs=141.1
Q ss_pred CeEEEEECCC--CCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCC---Cc-EEEEecC
Q 048801 287 DITDLAVSSN--NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD---GT-CRIWDAR 360 (1715)
Q Consensus 287 ~VtsLafSpD--g~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D---Gt-VrIWDl~ 360 (1715)
....|+|+|+ +..|+.+...+.|+.+++.++.... +........+|+|++++. ++++.... .. +...+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~---lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGD---MVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCC---EEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCC---EEEEcCCCCcccceEEEEECC
Confidence 4568999984 3445555444889999987776544 444455689999999987 34443321 11 2222221
Q ss_pred CCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCce
Q 048801 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIH 439 (1715)
Q Consensus 361 tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~ 439 (1715)
+....... .........+++++ +|.++++-..++.|+.++..++... .
T Consensus 216 -~~~~~~~~------------------------~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~------~ 264 (433)
T 4hw6_A 216 -SGFTERLS------------------------LCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT------E 264 (433)
T ss_dssp -GTTCCEEE------------------------EEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE------E
T ss_pred -CCeecccc------------------------ccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE------E
Confidence 11100000 00122346688999 7777777777889999998754320 1
Q ss_pred eeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC--CccCcccccccc
Q 048801 440 ELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS--RRSHGKVGRWTR 517 (1715)
Q Consensus 440 ~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t--~~~~~~~~~~~~ 517 (1715)
.+.. .+....-..++|+|++ ..++++-...+.|..+++.. +... ....+..
T Consensus 265 ~~~~-~~~~~~~~~ia~dpdG-------------------------~~LYvad~~~~~I~~~~~d~~~~~~~-~~~~~ag 317 (433)
T 4hw6_A 265 EEVM-MDTKGSNFHIVWHPTG-------------------------DWAYIIYNGKHCIYRVDYNRETGKLA-VPYIVCG 317 (433)
T ss_dssp EEEE-CSCCSSCEEEEECTTS-------------------------SEEEEEETTTTEEEEEEBCTTTCCBC-CCEEEEE
T ss_pred EEec-cCCCCCcccEEEeCCC-------------------------CEEEEEeCCCCEEEEEeCCCCCcccC-cEEEEEe
Confidence 1111 1112223468999886 12566667778899987652 2110 0000000
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe---------CCCCCEEEEEecCCeEEEEECCCCceEEEEecCC-
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW---------SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHS- 587 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf---------SPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~- 587 (1715)
.. ..... ..+ ......-.....+++ ..+|.++++-...+.|++++. +|.. .++.+..
T Consensus 318 ~~----g~~g~----~dg---~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~ 384 (433)
T 4hw6_A 318 QH----SSPGW----VDG---MGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGN 384 (433)
T ss_dssp CT----TCCCC----BCE---EGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE-EEEECCCT
T ss_pred cC----CCCcc----CCC---cccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCC
Confidence 00 00000 000 000111223567888 778888887777889999985 6643 3333221
Q ss_pred -----------------CCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 588 -----------------ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 588 -----------------~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
.....|++.|.++.++++-...++|+.++++
T Consensus 385 ~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 385 SREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 1256788885467777766667777777653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.23 Score=65.88 Aligned_cols=206 Identities=10% Similarity=-0.046 Sum_probs=122.2
Q ss_pred ceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccc
Q 048801 399 QILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 399 ~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
.+..++|.+ ++.++++-...+.|+.+++...... ......+.........|++...+
T Consensus 425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~-----~~~~~vi~~~l~~P~GLAvD~~~----------------- 482 (791)
T 3m0c_C 425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----SSYDTVISRDIQAPDGLAVDWIH----------------- 482 (791)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC-------------CEEEECSSCSCCCEEEEETTT-----------------
T ss_pred ceEEEeecccCCeeEEeeccceeEEEEeccCCCCC-----cceeEEEecCCCCcceeeeeecC-----------------
Confidence 467899988 4556666666788888888642100 01112222233345567776543
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
..++++-...+.|.+.++....... .+.........|+++|.+
T Consensus 483 --------~~LY~tD~~~~~I~v~~ldG~~~~~-----------------------------l~~~~l~~P~gIaVDp~~ 525 (791)
T 3m0c_C 483 --------SNIYWTDSVLGTVSVADTKGVKRKT-----------------------------LFRENGSKPRAIVVDPVH 525 (791)
T ss_dssp --------TEEEEEETTTTEEEEEETTSSSEEE-----------------------------EEECTTCCEEEEEEETTT
T ss_pred --------CcEEEEecCCCeEEEEeCCCCeEEE-----------------------------EEeCCCCCcceEEEecCC
Confidence 3566777778889888876422000 001122347889999986
Q ss_pred CEEEEEec-C-CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcc--cceE
Q 048801 558 RFVLAAIM-D-CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG--RFKL 633 (1715)
Q Consensus 558 ~~LaTgs~-D-GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h--~~~V 633 (1715)
.+|+.+.. . +.|.+.++........+...-...+.|++.+.+++++++-...+.|...++........+... -...
T Consensus 526 g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P 605 (791)
T 3m0c_C 526 GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHP 605 (791)
T ss_dssp TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSE
T ss_pred CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCC
Confidence 66665543 2 688888885443333333344568899999877777777667788999998544433333321 1234
Q ss_pred EEEEEcCCCCEEEEEe-CCCeEEEEECCCCccc
Q 048801 634 VDGKFSPDGTSIVLSD-DVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 634 ~svafSPDG~~LAsgs-~DG~I~IWdl~tGe~~ 665 (1715)
..|++ ++..|+.++ ..+.|...+..+|+.+
T Consensus 606 ~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 606 FSLAV--FEDKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp EEEEE--ETTEEEEEETTTTEEEEEETTTCCCC
T ss_pred CEEEE--eCCEEEEEECCCCEEEEEeCCCCcce
Confidence 45665 344566555 4578888887777544
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.28 Score=61.39 Aligned_cols=168 Identities=8% Similarity=0.026 Sum_probs=97.6
Q ss_pred CeEEEEEcC-CCCEEEEE-eCCCcEEEEeCCCCcEEEEecCC---CCCeEEEEE-------CCCCCEEEEEeCCC-----
Q 048801 245 AVYCAIFDR-SGRFVITG-SDDRLVKIWSMETAFCLASCRGH---EGDITDLAV-------SSNNTLVASASNDF----- 307 (1715)
Q Consensus 245 ~Vt~VafSp-DG~~LaTG-S~DGtIrIWDl~tgk~l~tL~gH---s~~VtsLaf-------SpDg~lLASGS~DG----- 307 (1715)
.-..|+|+| ++..|+.+ ...+.|++.|+.++.....+... ......|+| +++|.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 356899998 34444444 44567999999887666555432 235899999 99999777666544
Q ss_pred --eeEEEECCC-CCce-----EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecC-------CCCCcceecCCC
Q 048801 308 --VIRVWRLPD-GLPI-----SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR-------YSQYSPRIYLPK 372 (1715)
Q Consensus 308 --tIrVWDl~t-g~~l-----~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~-------tg~~l~~i~~~~ 372 (1715)
.|.+.+... |... ..+.. -.....++++|++.. ++++-..++.|..+|+. ++..-.... +.
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~--LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~-~~ 295 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGE--LYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV-KN 295 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCC--EEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG-GG
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCe--EEEEECCCCEEEEEecccccccccCceeecccc-cc
Confidence 255665433 2221 22321 123467888996553 56667778889999987 444300000 00
Q ss_pred CCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCe-EEEecCCCeEEEEeCC
Q 048801 373 PPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTV-FVTGSSDTFARVWSAC 427 (1715)
Q Consensus 373 ~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~-LatGs~DG~IrVWDl~ 427 (1715)
..... .. . ...........|+|+|+|++ +++-+..+.|+.++..
T Consensus 296 ~~g~~-~~---------l-~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 296 NPNTF-KQ---------L-FTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CTTTE-EE---------E-EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccccc-ce---------e-EecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 00000 00 0 00011233578999999994 5555667888886653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.4 Score=63.57 Aligned_cols=231 Identities=10% Similarity=-0.066 Sum_probs=133.9
Q ss_pred CCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCc--ceecCCCCCCCccCccC
Q 048801 305 NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS--PRIYLPKPPDAITGKSN 382 (1715)
Q Consensus 305 ~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l--~~i~~~~~~~~i~g~~~ 382 (1715)
....|+..++........+. ....+.+|+|.+.... ++++-...+.|+.+++...... ....+
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~--lY~sD~~~~~I~~~~l~g~~~~~~~~~vi------------ 466 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNR--IYWSDLSQRMICSTQLDRAHGVSSYDTVI------------ 466 (791)
T ss_dssp CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTE--EEEEETTTTEEEEEEC--------CEEEE------------
T ss_pred cccceeEeeccCCcceeeec-CCCceEEEeecccCCe--eEEeeccceeEEEEeccCCCCCcceeEEE------------
Confidence 34568888887665544444 4566789999986552 4555566788888887643210 00000
Q ss_pred CCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcc
Q 048801 383 VPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAV 461 (1715)
Q Consensus 383 ~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~ 461 (1715)
.........|++.+.+ +++++-...+.|.+.++.... ....+.........|++.|..
T Consensus 467 -----------~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~---------~~~l~~~~l~~P~gIaVDp~~- 525 (791)
T 3m0c_C 467 -----------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---------RKTLFRENGSKPRAIVVDPVH- 525 (791)
T ss_dssp -----------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS---------EEEEEECTTCCEEEEEEETTT-
T ss_pred -----------ecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe---------EEEEEeCCCCCcceEEEecCC-
Confidence 0012235678898766 566666678899999986431 111222333457788888753
Q ss_pred cccccccccccccccccccCCcccCceEEEEcCC-CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD-GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D-GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
+.++++-... +.|.+.++.... ...
T Consensus 526 ------------------------g~LYwtD~g~~~~I~~~~~dG~~------------------------------~~~ 551 (791)
T 3m0c_C 526 ------------------------GFMYWTDWGTPAKIKKGGLNGVD------------------------------IYS 551 (791)
T ss_dssp ------------------------TEEEEEECSSSCEEEEEETTSCC------------------------------EEE
T ss_pred ------------------------CCEEEecCCCCCeEEEEecCCCc------------------------------eEE
Confidence 1233333222 567766665311 011
Q ss_pred cc-CCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCceEEEEecC--CCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 541 LL-PTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSLVHSLTGH--SASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 541 l~-~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~~l~tL~gH--~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
+. ......+.|++++.+..|+.+. ..+.|...++........+... -....+|++. +++++++-...+.|...+
T Consensus 552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSAN 629 (791)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEe
Confidence 11 1123578899997766665554 4568999998554443344332 2334566663 457777777778888888
Q ss_pred CCCCceEEEEE
Q 048801 617 IWEGTPIRIYE 627 (1715)
Q Consensus 617 l~tgk~l~tl~ 627 (1715)
..+|+.+..+.
T Consensus 630 k~tG~~~~~l~ 640 (791)
T 3m0c_C 630 RLTGSDVNLLA 640 (791)
T ss_dssp TTTCCCCEEEE
T ss_pred CCCCcceEEee
Confidence 88887766664
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=1.5 Score=53.48 Aligned_cols=274 Identities=12% Similarity=0.091 Sum_probs=157.7
Q ss_pred CCCcEEEEeCCCCcEEEEe-cCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCc
Q 048801 263 DDRLVKIWSMETAFCLASC-RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSA 341 (1715)
Q Consensus 263 ~DGtIrIWDl~tgk~l~tL-~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~ 341 (1715)
.+..|.|-|+..+..+..- -.-. +.-.+|..+.||.-. ..++.|+|+++...+..+.-. ..|.--.|-.+.
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~-- 117 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-- 117 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECCCS----EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT--
T ss_pred CCCeEEEEECCCCCcceecccccc----eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCCC--
Confidence 3447889999876544221 1112 344688888777765 679999999999888887744 456666666554
Q ss_pred ceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-----
Q 048801 342 IYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS----- 416 (1715)
Q Consensus 342 ~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs----- 416 (1715)
.|+..+ +..|+-|++.... .+...+... ....+.+|..-..+++.++++..+
T Consensus 118 --~l~lVT-~taVyHWsi~~~s-~P~kvFdR~-------------------~~L~~~QIInY~~d~~~kW~~l~GI~~~~ 174 (494)
T 1bpo_A 118 --TVALVT-DNAVYHWSMEGES-QPVKMFDRH-------------------SSLAGCQIINYRTDAKQKWLLLTGISAQQ 174 (494)
T ss_dssp --EEEEEC-SSEEEEEESSSSC-CCEEEEECC-------------------GGGTTCEEEEEEECTTSSEEEEEEEEEET
T ss_pred --eEEEEc-CCeeEEecccCCC-Cchhheecc-------------------hhcccceEEEEEECCCCCeEEEEeecccC
Confidence 333333 4569999986522 111111110 011246788888899999887544
Q ss_pred --CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC
Q 048801 417 --SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR 494 (1715)
Q Consensus 417 --~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~ 494 (1715)
-.|.+.+|..... ....+.||......+.+..+.. ....++.+..
T Consensus 175 ~~v~G~mQLYS~er~----------~sQ~ieGhaa~F~~~~~~g~~~-----------------------~~~lf~fa~r 221 (494)
T 1bpo_A 175 NRVVGAMQLYSVDRK----------VSQPIEGHAASFAQFKMEGNAE-----------------------ESTLFCFAVR 221 (494)
T ss_dssp TEEEEEEEEEESTTC----------CEEEECCSEEEEEEEECTTCSS-----------------------EEEEEEEEEC
T ss_pred CcccceEEEeecccc----------ccchheeeeeeeEEEecCCCCC-----------------------CceEEEEEEe
Confidence 2478899998753 3466788866554444433210 0123333333
Q ss_pred ---CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEE
Q 048801 495 ---DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICV 571 (1715)
Q Consensus 495 ---DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~I 571 (1715)
.+.+.|.++..... +...-..+...+..++ .....-..++..|+....++.-+.-|.|++
T Consensus 222 ~~~g~kLhi~Ei~~~~~-~~~~f~kk~vdv~fpp----------------e~~~DFPvamqvs~kygviyviTK~G~i~l 284 (494)
T 1bpo_A 222 GQAGGKLHIIEVGTPPT-GNQPFPKKAVDVFFPP----------------EAQNDFPVAMQISEKHDVVFLITKYGYIHL 284 (494)
T ss_dssp STTCCEEEEEECSCCCT-TCCCCCCEEEECCCCT----------------TSTTCCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred cCCCcEEEEEEcCCCcc-CCCCccceeeeeeCCc----------------ccccCceeEEEecccCCEEEEEecCceEEE
Confidence 27888888754200 0000000011111100 011223456788888889999999999999
Q ss_pred EECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 572 WNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 572 WDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
||+.+|.++..-+-....|..-+.+...+.++ .....|.|.--.+.
T Consensus 285 yDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~-~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 285 YDLETGTCIYMNRISGETIFVTAPHEATAGII-GVNRKGQVLSVCVE 330 (494)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEEETTTTEEE-EEETTCEEEEEEEC
T ss_pred EecccceeeeeecccCCceEEecccCCCCcEE-EEccCceEEEEEEc
Confidence 99999999887776666665544444222222 23345544444443
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.58 E-value=2.3 Score=55.93 Aligned_cols=330 Identities=11% Similarity=0.032 Sum_probs=175.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe
Q 048801 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~ 324 (1715)
.|.++....++..|..|+. +-|..++..+++......-....|.++....+|.+.+. +.+ -+.+++..++.......
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~~~~~~~~ 268 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTTPLQHIIH 268 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETT-EEEEECCTTSCCEEECC
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCCcEEEEEc
Confidence 4889988887776555554 45778888776543221112346888988888876554 444 57788876655432211
Q ss_pred C-------CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCC
Q 048801 325 G-------HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQS 397 (1715)
Q Consensus 325 g-------H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~ 397 (1715)
. ....|.++....++. |..|+..| |.++.. .... ..+..... ......
T Consensus 269 ~~~~~~~l~~~~i~~i~~D~~g~----lWiGT~~G-l~~~~~-~~~~-~~~~~~~~------------------~~~~~~ 323 (758)
T 3ott_A 269 DSRNIQSLTNNIIWNIFADQEHN----IWLGTDYG-ISLSRY-NSAL-QFIPISQI------------------TGTGDG 323 (758)
T ss_dssp CTTCTTSCSCSCEEEEEECTTCC----EEEEESSS-EEEECC-CC-C-EEEEHHHH------------------SCSCCC
T ss_pred CCCCcCcCCcCeEEEEEEcCCCC----EEEEeCCc-cccccc-CCce-eEEecccC------------------CCCCCC
Confidence 0 124588888877764 55555556 544432 1111 11100000 000113
Q ss_pred cceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee----ecCCCCCeeEEEEccCcccccccccccccc
Q 048801 398 HQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV----LSGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 398 ~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~----l~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
..|.++....+|.+.+ |+.+| +..++..++... ....... ..-....|.++.-..++
T Consensus 324 ~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~v~~i~~d~~g------------- 384 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERH----DAIWYRMGDKTYPLSHNRIRHIYEDKEQ------------- 384 (758)
T ss_dssp CBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCC----CCEEECTTCSSSCCSCSCEEEEEECTTS-------------
T ss_pred ceEEEEEEcCCCCEEE-eeCCc-ceeecccccccc----eeEEeccCCcCCCCCCCceEEEEECCCC-------------
Confidence 4588888888887555 44555 556665432110 0000000 00112356666655543
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW 553 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf 553 (1715)
.|..|+ ++-|.+|+..+++... +..... .. ......|.++..
T Consensus 385 --------------~lWigt-~~GL~~~~~~~~~~~~--------~~~~~~----------~~-----~~~~~~v~~i~~ 426 (758)
T 3ott_A 385 --------------QLWIAT-DGSINRYDYATRQFIH--------YNIVDN----------TG-----TYNTNWTYYIFE 426 (758)
T ss_dssp --------------CEEEEE-TTEEEEEETTTTEEEE--------EEEECC----------C-------CBSSSEEEEEE
T ss_pred --------------CEEEEe-CCcHhhcCcCCCcEEE--------eecCCC----------cC-----CCCCceEEEEEE
Confidence 455555 4578888887643110 000000 00 001235788888
Q ss_pred CCCCCEEEEEecCCeEEEEECCC-----CceE---EEEec----CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 554 SLDNRFVLAAIMDCRICVWNAVD-----GSLV---HSLTG----HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 554 SPDG~~LaTgs~DGtI~IWDl~s-----g~~l---~tL~g----H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
..+|.+. .|+..+-|.+++..+ +... ..+.. ....|.++...+ ++.+.+.++..+-|..+|..+++
T Consensus 427 d~~g~lW-igT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~ 504 (758)
T 3ott_A 427 DTAGQLW-ISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTRE 504 (758)
T ss_dssp CTTSEEE-EEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTE
T ss_pred cCCCCEE-EEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCc
Confidence 8777644 466666688888542 1111 12211 123588888877 55666533444558889987765
Q ss_pred eEEEEEc---ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 622 PIRIYEI---GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 622 ~l~tl~~---h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
....... ....+.++....+|.+.+.+ . +.|..|+..+++
T Consensus 505 ~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~ 547 (758)
T 3ott_A 505 VTKLFADELTGEKSPNYLLCDEDGLLWVGF-H-GGVMRINPKDES 547 (758)
T ss_dssp EEEECTTTSCGGGCEEEEEECTTSCEEEEE-T-TEEEEECC--CC
T ss_pred eEEecCCCcCCCcccceEEECCCCCEEEEe-c-CceEEEecCCCc
Confidence 4432111 12457788888888876654 4 458888876654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.49 Score=56.54 Aligned_cols=60 Identities=12% Similarity=0.042 Sum_probs=37.6
Q ss_pred CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce------EEEEEcccceEEEEEEcCCCCEEEEEeC
Q 048801 589 SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTP------IRIYEIGRFKLVDGKFSPDGTSIVLSDD 650 (1715)
Q Consensus 589 ~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~------l~tl~~h~~~V~svafSPDG~~LAsgs~ 650 (1715)
....++|. ++.++++.-..+.|...++..... ...+......+.++++.|||.++++...
T Consensus 269 ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 269 PPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp CEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEECS
T ss_pred CCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEeC
Confidence 45677773 566776666667787777654321 1222223456889999999977766543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.01 Score=77.94 Aligned_cols=115 Identities=11% Similarity=-0.068 Sum_probs=70.3
Q ss_pred eeEEEeCCCCCEEEEEec-C-CeEEEEECCCCceEEEE-ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEE
Q 048801 548 VNMIVWSLDNRFVLAAIM-D-CRICVWNAVDGSLVHSL-TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIR 624 (1715)
Q Consensus 548 VtslafSPDG~~LaTgs~-D-GtI~IWDl~sg~~l~tL-~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~ 624 (1715)
...|+++|.+.+|+.+.. . +.|.++++.. .....+ ...-...+.|+|+|++++++++-...+.|.++++.. ....
T Consensus 498 P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG-~~~~ 575 (699)
T 1n7d_A 498 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRK 575 (699)
T ss_dssp CCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS-SCCE
T ss_pred cceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC-CceE
Confidence 466889987665555443 2 6788777643 333333 222334578999997788888877888999999854 3333
Q ss_pred EEEcc---cceEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCcccc
Q 048801 625 IYEIG---RFKLVDGKFSPDGTSIVLS-DDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 625 tl~~h---~~~V~svafSPDG~~LAsg-s~DG~I~IWdl~tGe~~k 666 (1715)
.+... ......|++..+ .|+.+ ...+.|..++..+|+...
T Consensus 576 ~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 576 TILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp EECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEE
T ss_pred EEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceE
Confidence 33211 122334555443 44444 456789999987776544
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.13 Score=60.88 Aligned_cols=159 Identities=12% Similarity=0.129 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcEEEE-ecC----CCC--CeEEEEE---CCCCCEEEEEeC---------
Q 048801 246 VYCAIFDRSGRFVITGS-DDRLVKIWSMETAFCLAS-CRG----HEG--DITDLAV---SSNNTLVASASN--------- 305 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS-~DGtIrIWDl~tgk~l~t-L~g----Hs~--~VtsLaf---SpDg~lLASGS~--------- 305 (1715)
--+++|++....|..++ ..|+|..|+...+..... +.+ ... .+..|.| .++++++++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 34678987555666665 789999999986654433 222 111 3579999 688888876442
Q ss_pred ----CCeeEEEECC---CCCceEEEe--CC-----------CCCeEEEEecCCCCcceEEEEecCC-CcEEEEecCCCCC
Q 048801 306 ----DFVIRVWRLP---DGLPISVLR--GH-----------TGAVTAIAFSPRPSAIYQLLSSSDD-GTCRIWDARYSQY 364 (1715)
Q Consensus 306 ----DGtIrVWDl~---tg~~l~~L~--gH-----------~~~VtsLafSPdg~~~~~LaSgS~D-GtVrIWDl~tg~~ 364 (1715)
+..|..+|+. +++.+.... .. ...+..++..++|+ ..++++.- +.|...+.... .
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn---aYVt~s~~~~~I~rV~pdG~-~ 170 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN---SYVAFALGMPAIARVSADGK-T 170 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC---EEEEEEESSCEEEEECTTSC-C
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC---EEEeCCCCCCeEEEEeCCCC-E
Confidence 5779999999 888776554 11 13488999999987 56666666 77666665433 2
Q ss_pred cceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCC
Q 048801 365 SPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 365 l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~ 427 (1715)
+..+....+ ........+.|+++|+|..|++....|.|..+|+.
T Consensus 171 ~~~~~~~~~-------------------~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 171 VSTFAWESG-------------------NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEEEECCC-------------------CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred EeeeeecCC-------------------CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 222211110 01112346789999999988888779999999986
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.013 Score=77.07 Aligned_cols=229 Identities=10% Similarity=-0.058 Sum_probs=119.4
Q ss_pred CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCC---CcceecCCCCCCCccCccC
Q 048801 306 DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQ---YSPRIYLPKPPDAITGKSN 382 (1715)
Q Consensus 306 DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~---~l~~i~~~~~~~~i~g~~~ 382 (1715)
.+.|++.++.+......+. ....+.+|+|.+.... ++++-...+.|+.+++.... ....+
T Consensus 385 ~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~~~~~--Ly~sD~~~~~I~~~~~~g~~~~~~~~~~-------------- 447 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNR--IYWSDLSQRMICSTQLDRAHGVSSYDTV-------------- 447 (699)
T ss_dssp TTC-CEECTTSCCEECCSC-CCTTCCCCEEETTTTE--EEECCTTTTSBEEEESCCCCC-CCCCCB--------------
T ss_pred ccceEEEeCCCCcceeeec-cCcceEEEccccccCe--EEEEecCCCeEEEEecCCCCCCcceEEE--------------
Confidence 3577788877655443333 2345678899886652 34444556788888876411 00000
Q ss_pred CCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcc
Q 048801 383 VPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAV 461 (1715)
Q Consensus 383 ~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~ 461 (1715)
..........|++.+ .+.++++-...+.|.++++..... ...+.........|++.|.+
T Consensus 448 ----------i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~---------~~l~~~~~~~P~giavDp~~- 507 (699)
T 1n7d_A 448 ----------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR---------KTLFREQGSKPRAIVVDPVH- 507 (699)
T ss_dssp ----------CCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE---------EEECCCSSCCCCCEECCSSS-
T ss_pred ----------EeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCce---------EEEEeCCCCCcceEEEccCC-
Confidence 000012245678875 455666656678899998864311 11111112234556666543
Q ss_pred cccccccccccccccccccCCcccCceEEEEcC-CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR-DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~-DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
+.++++-.. .+.|.++++.... ...
T Consensus 508 ------------------------g~ly~td~~~~~~I~~~~~dG~~------------------------------~~~ 533 (699)
T 1n7d_A 508 ------------------------GFMYWTDWGTPAKIKKGGLNGVD------------------------------IYS 533 (699)
T ss_dssp ------------------------SCCEECCCSSSCCEEBCCSSSCC------------------------------CCE
T ss_pred ------------------------CcEEEcccCCCCeEEEEeCCCCC------------------------------eeE
Confidence 122333222 2455555443211 000
Q ss_pred cc-CCCCCeeEEEeCCCCCEEE-EEecCCeEEEEECCCCceEEEEec--CCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 541 LL-PTPRGVNMIVWSLDNRFVL-AAIMDCRICVWNAVDGSLVHSLTG--HSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 541 l~-~h~~~VtslafSPDG~~La-Tgs~DGtI~IWDl~sg~~l~tL~g--H~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
+. ......+.|+|+|++..|+ +-+..+.|.++++........+.. ......+|++.. ..++++....+.|..++
T Consensus 534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~--~~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSAN 611 (699)
T ss_dssp ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET--TEEEEECSTTTCEEEEE
T ss_pred EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC--CEEEEEeCCCCeEEEEE
Confidence 00 1122356789998765554 444567899999864332222221 122234555543 46666766778888888
Q ss_pred CCCCceEEEEE
Q 048801 617 IWEGTPIRIYE 627 (1715)
Q Consensus 617 l~tgk~l~tl~ 627 (1715)
..+|+.+..+.
T Consensus 612 ~~~G~~~~~i~ 622 (699)
T 1n7d_A 612 RLTGSDVNLLA 622 (699)
T ss_dssp TTTEEEEECCC
T ss_pred ccCCCceEEee
Confidence 87777666554
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.78 Score=57.36 Aligned_cols=274 Identities=10% Similarity=0.013 Sum_probs=141.9
Q ss_pred CeEEEEECC-CC-CEEEEEeCCCeeEEEECCCCCceEEEeCC---CCCeEEEEe-------cCCCCcceEEEEecCCC-c
Q 048801 287 DITDLAVSS-NN-TLVASASNDFVIRVWRLPDGLPISVLRGH---TGAVTAIAF-------SPRPSAIYQLLSSSDDG-T 353 (1715)
Q Consensus 287 ~VtsLafSp-Dg-~lLASGS~DGtIrVWDl~tg~~l~~L~gH---~~~VtsLaf-------SPdg~~~~~LaSgS~DG-t 353 (1715)
....|+|+| ++ +++++....+.|++.|+.++.....+... ......|+| ++++. .|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~---~lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAE---YMIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTC---EEEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCC---EEEEEeCCCCC
Confidence 467899998 34 44444444567888998877655444322 235799999 99987 455554443 2
Q ss_pred ------EEEEecCC-CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEe
Q 048801 354 ------CRIWDARY-SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWS 425 (1715)
Q Consensus 354 ------VrIWDl~t-g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWD 425 (1715)
|.+++... +...... . +. .. ........++++| ++.++++-..++.|..+|
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~-----~----~~-----------~v-~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d 275 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRS-----D----IQ-----------LI-AAYKQCNGATIHPINGELYFNSYEKGQVFRLD 275 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTS-----C----EE-----------EE-EEESCCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred cccCceEEEEecCCCCceeecc-----c----ce-----------ee-ccCCCceEEEEcCCCCeEEEEECCCCEEEEEe
Confidence 44554322 1211000 0 00 00 0012345778899 566677777888999999
Q ss_pred CC-------CCCccCCCCC-----ceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCc-eEEEE
Q 048801 426 AC-------KSSVEDSEQP-----IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHD-NIVTC 492 (1715)
Q Consensus 426 l~-------t~~~~~~~~~-----~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~-~LaSg 492 (1715)
+. ++.......+ ...+..+ +.......|+|+|++ + ++++-
T Consensus 276 ~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G--------------------------~~lYvaD 328 (496)
T 3kya_A 276 LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTG--------------------------KYAYFGV 328 (496)
T ss_dssp HHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTS--------------------------SEEEEEE
T ss_pred cccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCC--------------------------CEEEEEe
Confidence 87 4432000000 1112111 223345789999987 4 46666
Q ss_pred cCCCeEEEEecCCCcc-CcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCee-EEEeC-------CCCCEEEEE
Q 048801 493 SRDGSAIIWIPRSRRS-HGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVN-MIVWS-------LDNRFVLAA 563 (1715)
Q Consensus 493 S~DGsIrIWDl~t~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vt-slafS-------PDG~~LaTg 563 (1715)
+....|+.++...... +.....+.... ..... ..+... ...-.... .++.. .+|.++++-
T Consensus 329 ~~~h~I~kid~dg~~~~~~~~~~~aG~~----g~~G~----~DG~~~---~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD 397 (496)
T 3kya_A 329 INNHYFMRSDYDEIKKEFITPYNFVGGY----KQSGY----RDDVGT---EARMNNPCQGVFVKNPDYTGEEEYDFYFVD 397 (496)
T ss_dssp TTTTEEEEEEEETTTTEECCCEEEEEBT----TBCCC----BCCBGG---GCBCSSEEEEEEEECTTCCSSCCEEEEEEE
T ss_pred CCCCEEEEEecCCCcceecccEEecCCC----CCCcc----cCCccc---ccccCCCeEEEEEccccccccCCCeEEEEE
Confidence 6778888866542110 00000000000 00000 001000 01111233 44554 567777777
Q ss_pred ecCCeEEEEECCCCceEEEEecCC------------------------CCeEEEEEccCCCcEEEEEeCCCcEEEEECCC
Q 048801 564 IMDCRICVWNAVDGSLVHSLTGHS------------------------ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 564 s~DGtI~IWDl~sg~~l~tL~gH~------------------------~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t 619 (1715)
..+++|+.++ .+|. +.++.+.. .....|++.+.++.++++=....+|+.+++..
T Consensus 398 ~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 398 RLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp GGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred CCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence 7788999998 4664 44554321 12467777774366666666667777777765
Q ss_pred CceEE
Q 048801 620 GTPIR 624 (1715)
Q Consensus 620 gk~l~ 624 (1715)
..+++
T Consensus 476 ~~~~~ 480 (496)
T 3kya_A 476 EENVA 480 (496)
T ss_dssp CC---
T ss_pred Ccccc
Confidence 54443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.36 Score=57.53 Aligned_cols=194 Identities=11% Similarity=0.142 Sum_probs=117.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCC----CC---EEEEEe-C--CCeeEEEECC-CCCceEE
Q 048801 254 SGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN----NT---LVASAS-N--DFVIRVWRLP-DGLPISV 322 (1715)
Q Consensus 254 DG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpD----g~---lLASGS-~--DGtIrVWDl~-tg~~l~~ 322 (1715)
...+++.....+-+.+||+ +|+.++.+.. +.++.+.+-|+ |+ ++++.. . +++|.||++. ....+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 4456666667788999999 8999999874 56777776653 22 233333 3 5789999774 2223555
Q ss_pred EeC------CC-CCeEEEEe--cCCCCcceEEEEecCCCcEEEEecCC---C----CCcceecCCCCCCCccCccCCCCC
Q 048801 323 LRG------HT-GAVTAIAF--SPRPSAIYQLLSSSDDGTCRIWDARY---S----QYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 323 L~g------H~-~~VtsLaf--SPdg~~~~~LaSgS~DGtVrIWDl~t---g----~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
+.. .. ..+..+|+ +|.... .++++...+|.+..|++.. + +.+.++.+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~-~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---------------- 178 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGK-YYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---------------- 178 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCC-EEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC----------------
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCc-EEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC----------------
Confidence 521 11 55677887 665432 2677788889999998842 2 22233222
Q ss_pred CCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec-C-CCCCeeEEEEccCccccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS-G-HENDVNYVQFSGCAVASR 464 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~-g-H~~~V~sLafspdg~as~ 464 (1715)
..++-.|++.+....|.++-++..|..|+..... ......+..+. + -...+..|++.+...
T Consensus 179 ----------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~----~~~~~~v~~~~~g~l~aDvEGLai~~~~~--- 241 (355)
T 3amr_A 179 ----------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDG----GSNGTVIDRADGRHLTRDIEGLTIYYAAD--- 241 (355)
T ss_dssp ----------SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTS----CSCCEEEEEBSSSSBCSCEEEEEEEECGG---
T ss_pred ----------CCCcceEEEcCCCCeEEEecccceEEEEeCCcCC----CCCceEEEEecCCccccCcceEEEEecCC---
Confidence 2357788888888888888888666666654211 01112232221 2 223677777743210
Q ss_pred ccccccccccccccccCCcccC-ceEEEEcCCCeEEEEecC
Q 048801 465 SAMSDAFKEENVPKFKNSWFCH-DNIVTCSRDGSAIIWIPR 504 (1715)
Q Consensus 465 ~~~~~~~~~~~~~~~~~s~~~~-~~LaSgS~DGsIrIWDl~ 504 (1715)
.. -.|+++-.+.++.+||..
T Consensus 242 --------------------g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 242 --------------------GKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp --------------------GCEEEEEEEGGGTEEEEEESS
T ss_pred --------------------CCEEEEEEcCCCCEEEEEECC
Confidence 01 245555578899999986
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.13 E-value=2.1 Score=51.15 Aligned_cols=81 Identities=16% Similarity=0.106 Sum_probs=50.5
Q ss_pred EecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE--EE----eCCCCCeEEEEecCC---CCcceEE-EEec
Q 048801 280 SCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS--VL----RGHTGAVTAIAFSPR---PSAIYQL-LSSS 349 (1715)
Q Consensus 280 tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~--~L----~gH~~~VtsLafSPd---g~~~~~L-aSgS 349 (1715)
.+...-...+.|+|.|||.++++--..|.|++++..++.... .+ ....+....|+|+|+ +..+ |+ .+..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~l-Yv~yt~~ 104 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMV-YAYFTSA 104 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEE-EEEEECS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEE-EEEEecC
Confidence 344445567899999999988777658999999866665322 12 123456899999996 3322 22 2223
Q ss_pred CCCcEEEEecCC
Q 048801 350 DDGTCRIWDARY 361 (1715)
Q Consensus 350 ~DGtVrIWDl~t 361 (1715)
.++.|.-|.+..
T Consensus 105 ~~~~v~R~~~~~ 116 (347)
T 3das_A 105 SDNRIVRMLYDE 116 (347)
T ss_dssp SSEEEEEEEBCT
T ss_pred CCCEEEEEEeCC
Confidence 445555565543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.05 E-value=1 Score=53.79 Aligned_cols=73 Identities=14% Similarity=0.065 Sum_probs=45.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCce--EEEe---CCCCCeEEEEecCC---CCcceEEEEecCC-----
Q 048801 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI--SVLR---GHTGAVTAIAFSPR---PSAIYQLLSSSDD----- 351 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l--~~L~---gH~~~VtsLafSPd---g~~~~~LaSgS~D----- 351 (1715)
-.....|+|.|+|+++++ ..+|.|.+++ ++... ..+. ........|+|+|+ +.. +.++-...
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~--lYv~~~~~~~~~~ 104 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPY--VYAYRTVAEGGLR 104 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCE--EEEEEEECTTSSE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCE--EEEEEecCCCCCc
Confidence 345679999999986555 5669999998 44321 1111 12356899999998 442 22332222
Q ss_pred CcEEEEecCCC
Q 048801 352 GTCRIWDARYS 362 (1715)
Q Consensus 352 GtVrIWDl~tg 362 (1715)
+.|..|+...+
T Consensus 105 ~~v~r~~~~~~ 115 (352)
T 2ism_A 105 NQVVRLRHLGE 115 (352)
T ss_dssp EEEEEEEECSS
T ss_pred cEEEEEEeCCC
Confidence 56777776643
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.26 Score=58.31 Aligned_cols=112 Identities=6% Similarity=0.022 Sum_probs=81.0
Q ss_pred eeEEEe---CCCCCEEEEEec-------------CCeEEEEECC---CCceEEEEe--c-----------CCCCeEEEEE
Q 048801 548 VNMIVW---SLDNRFVLAAIM-------------DCRICVWNAV---DGSLVHSLT--G-----------HSASSYVLDV 595 (1715)
Q Consensus 548 Vtslaf---SPDG~~LaTgs~-------------DGtI~IWDl~---sg~~l~tL~--g-----------H~~~V~sLaf 595 (1715)
+..|.| .|+++++++... +..|..||+. +++.+.... + -......++.
T Consensus 65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav 144 (334)
T 2p9w_A 65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ 144 (334)
T ss_dssp EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence 578999 688888876442 6779999999 888776554 1 1134789999
Q ss_pred ccCCCcEEEEEeCC-CcEEEEECCCCceEEEEEccc------ceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 596 HPFNPRIAMSAGYD-GRTIVWDIWEGTPIRIYEIGR------FKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 596 SP~dg~lLaSgs~D-GtI~VWDl~tgk~l~tl~~h~------~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
.+ +++..++++.. +.|...+.. |+.+..+.... .....++++|||..|++....|.|..+|+.+
T Consensus 145 D~-~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 145 DR-DGNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CT-TSCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CC-CCCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 99 66777778777 887777753 44444432111 1255889999999999987799999999873
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=95.73 E-value=1.1 Score=53.47 Aligned_cols=113 Identities=11% Similarity=0.055 Sum_probs=74.3
Q ss_pred CCeeEEEe--CCC-CC-EEEEEecCCeEEEEECC-------CCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEE
Q 048801 546 RGVNMIVW--SLD-NR-FVLAAIMDCRICVWNAV-------DGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIV 614 (1715)
Q Consensus 546 ~~Vtslaf--SPD-G~-~LaTgs~DGtI~IWDl~-------sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~V 614 (1715)
..+..+|+ ++. +. ++++...+|.+..|++. +++++++|... +.+-.+...+ ....|+.+-.+.-|..
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd-~~g~Lyv~eEd~GIw~ 205 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADD-EYGRLYIAEEDEAIWK 205 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEET-TTTEEEEEETTTEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcC-CCCeEEEecccceEEE
Confidence 34556677 774 44 67888889999999882 34566777643 4577888877 4455666777766666
Q ss_pred EECC-----CCceEEEEEcc--cceEEEEEE--cCCCC-EEEEEe-CCCeEEEEECC
Q 048801 615 WDIW-----EGTPIRIYEIG--RFKLVDGKF--SPDGT-SIVLSD-DVGQIYLLNTG 660 (1715)
Q Consensus 615 WDl~-----tgk~l~tl~~h--~~~V~svaf--SPDG~-~LAsgs-~DG~I~IWdl~ 660 (1715)
++.. +++.+..+... ...+-.|++ .++|+ +|++++ .+..+.||+..
T Consensus 206 ~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 206 FSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 6644 34566554321 135677777 66766 666655 67799999985
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.71 E-value=3.5 Score=49.08 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=44.8
Q ss_pred CCeEEEEEcc------CCCcEEEEEeCCCcEEEEECCCCceEEEEE---cccceEEEEEEcCCCCEEEEEe-CCCeEEE
Q 048801 588 ASSYVLDVHP------FNPRIAMSAGYDGRTIVWDIWEGTPIRIYE---IGRFKLVDGKFSPDGTSIVLSD-DVGQIYL 656 (1715)
Q Consensus 588 ~~V~sLafSP------~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~---~h~~~V~svafSPDG~~LAsgs-~DG~I~I 656 (1715)
.....++|.. ..+.++++.-..+.|...++..++.+.... .....+..+++.|||.++++.+ .+|.|+-
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I~r 349 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLK 349 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEEEE
Confidence 3567788864 136777776677888888887665443322 1234688999999999777654 4565543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=3.3 Score=49.41 Aligned_cols=62 Identities=6% Similarity=-0.074 Sum_probs=40.2
Q ss_pred CCeEEEEEcc------CCCcEEEEEeCCCcEEEEECCCC-ceE--EEEEc-ccceEEEEEEcCCCCEEEEEe
Q 048801 588 ASSYVLDVHP------FNPRIAMSAGYDGRTIVWDIWEG-TPI--RIYEI-GRFKLVDGKFSPDGTSIVLSD 649 (1715)
Q Consensus 588 ~~V~sLafSP------~dg~lLaSgs~DGtI~VWDl~tg-k~l--~tl~~-h~~~V~svafSPDG~~LAsgs 649 (1715)
.....++|.. .++.++++.-..+.|...++... +.. ..+.. ....+.++++.|||.+.++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 3467888831 25677777667778888888753 332 22321 235688999999997666654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=4.9 Score=47.83 Aligned_cols=60 Identities=10% Similarity=0.074 Sum_probs=39.1
Q ss_pred CCeeEEEeC-------CCCCEEEEEecCCeEEEEECCCC-ceE--EEE-ecCCCCeEEEEEccCCCcEEEEE
Q 048801 546 RGVNMIVWS-------LDNRFVLAAIMDCRICVWNAVDG-SLV--HSL-TGHSASSYVLDVHPFNPRIAMSA 606 (1715)
Q Consensus 546 ~~VtslafS-------PDG~~LaTgs~DGtI~IWDl~sg-~~l--~tL-~gH~~~V~sLafSP~dg~lLaSg 606 (1715)
.....++|. .+|.++++....+.|...++... ... ..+ .+-...+..|++.| ++.++++.
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~p-DG~lyv~~ 329 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDD-DGGILIST 329 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECT-TSCEEEEE
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECC-CCcEEEEE
Confidence 457778883 57777777777788888888753 332 233 23345688899988 45655554
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.56 Score=53.95 Aligned_cols=103 Identities=11% Similarity=0.084 Sum_probs=58.7
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCceEEE--EecCCCCeEEEEEccCCCcEEEEEeCC-----CcEEEEECCCCceE
Q 048801 556 DNRFVLAAIMD-----CRICVWNAVDGSLVHS--LTGHSASSYVLDVHPFNPRIAMSAGYD-----GRTIVWDIWEGTPI 623 (1715)
Q Consensus 556 DG~~LaTgs~D-----GtI~IWDl~sg~~l~t--L~gH~~~V~sLafSP~dg~lLaSgs~D-----GtI~VWDl~tgk~l 623 (1715)
++.+++.|+.+ ..+.+||+.+.+-... +........++.+ ++.+++.||.+ ..|.+||+.+.+-.
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 67777877755 3588999887654332 1111111222332 56788888765 46899999877544
Q ss_pred EEEEc--ccceEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCc
Q 048801 624 RIYEI--GRFKLVDGKFSPDGTSIVLSDDV-----GQIYLLNTGQGE 663 (1715)
Q Consensus 624 ~tl~~--h~~~V~svafSPDG~~LAsgs~D-----G~I~IWdl~tGe 663 (1715)
..-.. .......+. -++++++.|+.+ ..|.+||+.+.+
T Consensus 236 ~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 236 TVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred ECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 32211 111112222 267777777655 357778876654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.29 Score=59.63 Aligned_cols=156 Identities=16% Similarity=0.184 Sum_probs=102.1
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCC----CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC---------
Q 048801 252 DRSGRFVITGSDDRLVKIWSMETAFCLASCRGH----EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL--------- 318 (1715)
Q Consensus 252 SpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gH----s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~--------- 318 (1715)
..+|.-|+.+- ++.||.-++......+.+.-. -..|..+..+|+|++||..+. ..|.|-.+..+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence 44666666664 478888888755445555432 236888999999999998865 489998887432
Q ss_pred ---ceEEEeC------CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCC
Q 048801 319 ---PISVLRG------HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 319 ---~l~~L~g------H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
..+.+.- ...+|..+.|+|-+.....|++-..|++|++||+......+. .+.+.....
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~f------------ 173 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSF------------ 173 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEE------------
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccccc------------
Confidence 1122321 246799999999876555899999999999999987443333 221111000
Q ss_pred CCCCCCCCcceeEEEEccCCCeEEE--ecCCCeEEEE
Q 048801 390 SSSNGLQSHQILCCAYNANGTVFVT--GSSDTFARVW 424 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpdG~~Lat--Gs~DG~IrVW 424 (1715)
........|.+++|..+|-.|.+ .+..|.|+-.
T Consensus 174 --g~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 174 --GLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp --ESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred --CCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 11122366899999998866665 4466776544
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.54 Score=54.14 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=56.2
Q ss_pred CCCEEEEEecC-------CeEEEEECCCCceEEE--EecCCCCeEEEEEccCCCcEEEEEeCCC-----cEEEEECCCCc
Q 048801 556 DNRFVLAAIMD-------CRICVWNAVDGSLVHS--LTGHSASSYVLDVHPFNPRIAMSAGYDG-----RTIVWDIWEGT 621 (1715)
Q Consensus 556 DG~~LaTgs~D-------GtI~IWDl~sg~~l~t--L~gH~~~V~sLafSP~dg~lLaSgs~DG-----tI~VWDl~tgk 621 (1715)
++.+++.|+.+ ..+.+||+.+.+-... +........++.+ ++.+++.||.++ .+.+||+.+.+
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 66777777643 3588999887654332 1111111222222 568888887653 68899988765
Q ss_pred eEEEEEcccceEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCc
Q 048801 622 PIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG-----QIYLLNTGQGE 663 (1715)
Q Consensus 622 ~l~tl~~h~~~V~svafSPDG~~LAsgs~DG-----~I~IWdl~tGe 663 (1715)
-...-..........+..-++++++.|+.++ .+.+||+.+.+
T Consensus 232 W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 232 WRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 4332111111111111222666777776543 36777776553
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.49 Score=54.43 Aligned_cols=104 Identities=12% Similarity=0.119 Sum_probs=53.1
Q ss_pred CCCEEEEEe-CC-----CcEEEEeCCCCcEEEE--ecCCCCCeEEEEECCCCCEEEEEeCC-----CeeEEEECCCCC--
Q 048801 254 SGRFVITGS-DD-----RLVKIWSMETAFCLAS--CRGHEGDITDLAVSSNNTLVASASND-----FVIRVWRLPDGL-- 318 (1715)
Q Consensus 254 DG~~LaTGS-~D-----GtIrIWDl~tgk~l~t--L~gHs~~VtsLafSpDg~lLASGS~D-----GtIrVWDl~tg~-- 318 (1715)
++.+++.|+ .+ ..+.+||..+.+-... +........++. .++.+++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 344556665 22 3688899877643221 111111122222 357777777754 468899988766
Q ss_pred -ceEE--EeCCCCCeEEEEecCCCCcceEEEEecCC-----CcEEEEecCCCCC
Q 048801 319 -PISV--LRGHTGAVTAIAFSPRPSAIYQLLSSSDD-----GTCRIWDARYSQY 364 (1715)
Q Consensus 319 -~l~~--L~gH~~~VtsLafSPdg~~~~~LaSgS~D-----GtVrIWDl~tg~~ 364 (1715)
-... +........++.+ ++. .++.|+.+ ..+.+||+.+.+.
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~~~---lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--GDM---IYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--TTE---EEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred eeEECCCCCCCccceeEEEE--CCE---EEEEcccCCCcccceEEEEcCCCCeE
Confidence 3222 1111111122222 333 55556543 3577888876653
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.29 E-value=3.4 Score=51.06 Aligned_cols=56 Identities=18% Similarity=0.111 Sum_probs=32.8
Q ss_pred CcEEEEEeCCCcEEEEECCC-CceE----EEEEcccceEEEEEEcCCCC-EEEEEeCCCeEE
Q 048801 600 PRIAMSAGYDGRTIVWDIWE-GTPI----RIYEIGRFKLVDGKFSPDGT-SIVLSDDVGQIY 655 (1715)
Q Consensus 600 g~lLaSgs~DGtI~VWDl~t-gk~l----~tl~~h~~~V~svafSPDG~-~LAsgs~DG~I~ 655 (1715)
+.+++..-..+.|....+.. +..+ ..+......+.+|++.|||. ++++.+..|.|+
T Consensus 369 g~lfv~~~~~~~i~~v~l~~~g~~~~~~~~~~~~~~~R~~dv~~gpDG~~Lyv~~d~~G~i~ 430 (454)
T 1cru_A 369 NTLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKSNNRYRDVIASPDGNVLYVLTDTAGNVQ 430 (454)
T ss_dssp TEEEEEBSSSCCEEEEEECTTSSSEEEEEEEESCCSSCEEEEEECTTSSCEEEEECSSCCEE
T ss_pred CcEEEeecCCCEEEEEEECCCCCeeeeeeeeecccCCCceeEEECCCCCEEEEEECCCCCCc
Confidence 34555444456666666653 3322 12222345788999999997 666666566544
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.92 Score=52.29 Aligned_cols=103 Identities=12% Similarity=0.028 Sum_probs=57.0
Q ss_pred CCCEEEEEec---------CCeEEEEECCCCceEEEE--ecCCCCeEEEEEccCCCcEEEEEeCC-----CcEEEEECCC
Q 048801 556 DNRFVLAAIM---------DCRICVWNAVDGSLVHSL--TGHSASSYVLDVHPFNPRIAMSAGYD-----GRTIVWDIWE 619 (1715)
Q Consensus 556 DG~~LaTgs~---------DGtI~IWDl~sg~~l~tL--~gH~~~V~sLafSP~dg~lLaSgs~D-----GtI~VWDl~t 619 (1715)
++.+++.|+. -..+.+||+.+.+-...- ........++.+ ++++++.||.+ ..|.+||+.+
T Consensus 149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~ 225 (306)
T 3ii7_A 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKL 225 (306)
T ss_dssp TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTT
T ss_pred CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCC
Confidence 6777777764 345889999877533221 111111122222 56788887754 3588999887
Q ss_pred CceEEE--EEcccceEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCc
Q 048801 620 GTPIRI--YEIGRFKLVDGKFSPDGTSIVLSDDV-----GQIYLLNTGQGE 663 (1715)
Q Consensus 620 gk~l~t--l~~h~~~V~svafSPDG~~LAsgs~D-----G~I~IWdl~tGe 663 (1715)
.+-... +.........+.+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 226 ~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 226 NEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 643322 1111112222222 67777777744 467778876654
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.88 Score=52.32 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=37.7
Q ss_pred CCCEEEEEecCC-----eEEEEECCCCceEEEE--ecCCCCeEEEEEccCCCcEEEEEeCCC-----cEEEEECCCCc
Q 048801 556 DNRFVLAAIMDC-----RICVWNAVDGSLVHSL--TGHSASSYVLDVHPFNPRIAMSAGYDG-----RTIVWDIWEGT 621 (1715)
Q Consensus 556 DG~~LaTgs~DG-----tI~IWDl~sg~~l~tL--~gH~~~V~sLafSP~dg~lLaSgs~DG-----tI~VWDl~tgk 621 (1715)
++.+++.|+.++ .|.+||+.+.+-...- .........+.+ ++.+++.||.++ .|.+||+.+.+
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV---NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE---CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 677888887653 6899999876543321 111111122222 667888887654 47888887654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.44 E-value=1.5 Score=50.40 Aligned_cols=102 Identities=8% Similarity=-0.026 Sum_probs=53.3
Q ss_pred CEEEEEeC--CCcEEEEeCCCCcEEE--EecCCCCCeEEEEECCCCCEEEEEeCC----CeeEEEECCCCCceEE--EeC
Q 048801 256 RFVITGSD--DRLVKIWSMETAFCLA--SCRGHEGDITDLAVSSNNTLVASASND----FVIRVWRLPDGLPISV--LRG 325 (1715)
Q Consensus 256 ~~LaTGS~--DGtIrIWDl~tgk~l~--tL~gHs~~VtsLafSpDg~lLASGS~D----GtIrVWDl~tg~~l~~--L~g 325 (1715)
.+++.|+. ...+.+||..+.+-.. .+......-.++.+ ++.+++.|+.+ ..+.+||+.+..-... +..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 34555654 3578889988764322 12111112222222 67777787754 5688899877643222 111
Q ss_pred CCCCeEEEEecCCCCcceEEEEecCC------CcEEEEecCCCCC
Q 048801 326 HTGAVTAIAFSPRPSAIYQLLSSSDD------GTCRIWDARYSQY 364 (1715)
Q Consensus 326 H~~~VtsLafSPdg~~~~~LaSgS~D------GtVrIWDl~tg~~ 364 (1715)
.......+.+ ++. .++.|+.+ ..+.+||+.+...
T Consensus 91 ~r~~~~~~~~--~~~---iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 91 PRDSLAACAA--EGK---IYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp CCBSCEEEEE--TTE---EEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred cccceeEEEE--CCE---EEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 1111122222 333 55666654 4588888877653
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.41 E-value=1.4 Score=51.03 Aligned_cols=104 Identities=14% Similarity=0.065 Sum_probs=56.5
Q ss_pred CCCCEEEEEec-C-----CeEEEEECCCCceEEE--EecCCCCeEEEEEccCCCcEEEEEeCCC-----cEEEEECCCCc
Q 048801 555 LDNRFVLAAIM-D-----CRICVWNAVDGSLVHS--LTGHSASSYVLDVHPFNPRIAMSAGYDG-----RTIVWDIWEGT 621 (1715)
Q Consensus 555 PDG~~LaTgs~-D-----GtI~IWDl~sg~~l~t--L~gH~~~V~sLafSP~dg~lLaSgs~DG-----tI~VWDl~tgk 621 (1715)
.++++++.|+. + ..+.+||+.+.+-... +........++.+ ++++++.||.++ .+.+||+.+.+
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 36777777776 2 3689999887643321 1111111122222 668888888665 48889988765
Q ss_pred eEEEEE--cccceEEEEEEcCCCCEEEEEeCCC--------------eEEEEECCCCc
Q 048801 622 PIRIYE--IGRFKLVDGKFSPDGTSIVLSDDVG--------------QIYLLNTGQGE 663 (1715)
Q Consensus 622 ~l~tl~--~h~~~V~svafSPDG~~LAsgs~DG--------------~I~IWdl~tGe 663 (1715)
-...-. ........+ .-++++++.|+.++ .|.+||+.+.+
T Consensus 224 W~~~~~~p~~r~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 224 WAPFEAFPQERSSLSLV--SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EEEECCCSSCCBSCEEE--EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred EEECCCCCCcccceeEE--EECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 433221 111111122 22667777776532 36677776653
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=94.30 E-value=12 Score=44.65 Aligned_cols=101 Identities=12% Similarity=0.012 Sum_probs=54.0
Q ss_pred CeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCc------------------eEEEEecCCCCeEEEEEccCCCcEEEEEe
Q 048801 547 GVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGS------------------LVHSLTGHSASSYVLDVHPFNPRIAMSAG 607 (1715)
Q Consensus 547 ~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~------------------~l~tL~gH~~~V~sLafSP~dg~lLaSgs 607 (1715)
....++|+|+|.+.++-. .++.=.|--+..|. ++..+..+......|+|. ++.+++..-
T Consensus 203 Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~--~g~~~~~~l 280 (347)
T 3das_A 203 NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA--EGSVWMAGL 280 (347)
T ss_dssp BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE--TTEEEEEES
T ss_pred CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE--cCceeeccc
Confidence 456789999887666532 22222222222221 123333232345677775 355665555
Q ss_pred CCCcEEEEECCCCce----EEEEEcccceEEEEEEcCCCCEEEEEe
Q 048801 608 YDGRTIVWDIWEGTP----IRIYEIGRFKLVDGKFSPDGTSIVLSD 649 (1715)
Q Consensus 608 ~DGtI~VWDl~tgk~----l~tl~~h~~~V~svafSPDG~~LAsgs 649 (1715)
..+.|....+..+.. ...+.+..+.+.+|++.|||.++++.+
T Consensus 281 ~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 281 RGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 555666666654322 222323345788888899987766654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=94.26 E-value=2 Score=59.38 Aligned_cols=275 Identities=12% Similarity=0.103 Sum_probs=151.5
Q ss_pred CCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcc
Q 048801 263 DDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAI 342 (1715)
Q Consensus 263 ~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~ 342 (1715)
....|.|-|+..+..+..-. -.--+.-.+|..+.||.-. ..++.|+|+++...+..+.- ...|.-=.|-....
T Consensus 46 ~~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~-- 118 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-- 118 (1630)
T ss_pred CCceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCe--
Confidence 34478899988765432111 1112234678777777654 67999999998887777663 34566667766543
Q ss_pred eEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec------
Q 048801 343 YQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS------ 416 (1715)
Q Consensus 343 ~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs------ 416 (1715)
|+..+ +..|..|++.... .+...+... ....+.+|..-..+++.++++..|
T Consensus 119 --l~lVT-~~aVyHW~~~~~s-~P~k~fdR~-------------------~~L~~~QIinY~~d~~~kW~~l~gi~~~~~ 175 (1630)
T 1xi4_A 119 --VALVT-DNAVYHWSMEGES-QPVKMFDRH-------------------SSLAGCQIINYRTDAKQKWLLLTGISAQQN 175 (1630)
T ss_pred --eEEEc-CCeEEEeccCCCC-ccHHHHhcc-------------------hhcccCeeEEeeeCCCCCeEEEEeeccCCC
Confidence 33333 3459999996421 111111000 011246688888888998877543
Q ss_pred -CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEc--
Q 048801 417 -SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-- 493 (1715)
Q Consensus 417 -~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-- 493 (1715)
-.|.+.+|..... ..+.+.||.+....+....... ....++.+.
T Consensus 176 ~v~G~mQLyS~er~----------~sQ~iegha~~F~~~~~~~~~~-----------------------~~~l~~f~~~~ 222 (1630)
T 1xi4_A 176 RVVGAMQLYSVDRK----------VSQPIEGHAASFAQFKMEGNAE-----------------------ESTLFCFAVRG 222 (1630)
T ss_pred cccceeeeeecccc----------cchhhhHhHhhhheeccCCCCC-----------------------CceEEEEEEec
Confidence 3578889988753 2345677766554444332210 011222221
Q ss_pred -CCCeEEEEecCCCccCccccccc-ccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEE
Q 048801 494 -RDGSAIIWIPRSRRSHGKVGRWT-RAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICV 571 (1715)
Q Consensus 494 -~DGsIrIWDl~t~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~I 571 (1715)
..+.+.|-++..... +. +.+. +...+..++ .....-..++..|+....+..-+.-|.|++
T Consensus 223 ~~g~kLhi~Ei~~~~~-~~-~~f~kk~~~~~~~~----------------~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~ 284 (1630)
T 1xi4_A 223 QAGGKLHIIEVGTPPT-GN-QPFPKKAVDVFFPP----------------EAQNDFPVAMQISEKHDVVFLITKYGYIHL 284 (1630)
T ss_pred CCCceEEEEecCCCcc-CC-CCCccccccccCCc----------------ccccCcceEEEeccccCEEEEEecCceEEE
Confidence 136888887754200 00 0000 000000000 011222446778888888888899999999
Q ss_pred EECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC
Q 048801 572 WNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 572 WDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t 619 (1715)
+|+.+|.++..-+-...+|...+.+...+.++ .....|.|.--.+..
T Consensus 285 ~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~-~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 285 YDLETGTCIYMNRISGETIFVTAPHEATAGII-GVNRKGQVLSVCVEE 331 (1630)
T ss_pred EecccchhhhhccccCCceEEeccCCCCCceE-EEcCCceEEEEEEcc
Confidence 99999998876655555555544443222232 223455554444443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=93.74 E-value=14 Score=43.69 Aligned_cols=59 Identities=10% Similarity=0.166 Sum_probs=38.8
Q ss_pred CCeeEEEeCC-------CCCEEEEEecCCeEEEEECCCCceEEE--E-ecCCCCeEEEEEccCCCcEEEE
Q 048801 546 RGVNMIVWSL-------DNRFVLAAIMDCRICVWNAVDGSLVHS--L-TGHSASSYVLDVHPFNPRIAMS 605 (1715)
Q Consensus 546 ~~VtslafSP-------DG~~LaTgs~DGtI~IWDl~sg~~l~t--L-~gH~~~V~sLafSP~dg~lLaS 605 (1715)
..+..++|.. +|.++++....+.|...++..++.+.. + ......+..|++.| ++.++++
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p-dG~lyv~ 339 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP-DGYLYVL 339 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT-TSCEEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC-CCcEEEE
Confidence 3567777753 577777777788888888876654432 2 23345788999999 4555543
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=93.47 E-value=1.7 Score=50.21 Aligned_cols=102 Identities=13% Similarity=0.039 Sum_probs=55.2
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCceEEE--EecCCCCeEEEEEccCCCcEEEEEeCC-----CcEEEEECCCCceE
Q 048801 556 DNRFVLAAIMD-----CRICVWNAVDGSLVHS--LTGHSASSYVLDVHPFNPRIAMSAGYD-----GRTIVWDIWEGTPI 623 (1715)
Q Consensus 556 DG~~LaTgs~D-----GtI~IWDl~sg~~l~t--L~gH~~~V~sLafSP~dg~lLaSgs~D-----GtI~VWDl~tgk~l 623 (1715)
++.+++.|+.+ ..+.+||+.+.+-... +........++.+ ++.+++.||.+ ..+.+||+.+.+-.
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 67777777764 3588999877653321 1111111223333 66788888765 46899998876543
Q ss_pred EE--EEcccceEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCC
Q 048801 624 RI--YEIGRFKLVDGKFSPDGTSIVLSDDV-----GQIYLLNTGQG 662 (1715)
Q Consensus 624 ~t--l~~h~~~V~svafSPDG~~LAsgs~D-----G~I~IWdl~tG 662 (1715)
.. +.........+. -++++++.|+.+ ..|.+||+.+.
T Consensus 245 ~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 245 FVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp ECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred ECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 22 111111111122 256666666643 34666666554
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=93.41 E-value=3.2 Score=47.82 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=37.7
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCceEEE--EecCCCCeEEEEEccCCCcEEEEEeCCC-----cEEEEECCCCce
Q 048801 556 DNRFVLAAIMD-----CRICVWNAVDGSLVHS--LTGHSASSYVLDVHPFNPRIAMSAGYDG-----RTIVWDIWEGTP 622 (1715)
Q Consensus 556 DG~~LaTgs~D-----GtI~IWDl~sg~~l~t--L~gH~~~V~sLafSP~dg~lLaSgs~DG-----tI~VWDl~tgk~ 622 (1715)
++.+++.|+.+ ..|.+||+.+.+-... +.........+.+ ++++++.||.++ .|.+||+.+.+-
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH---QGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE---CCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 67788888765 4689999987653322 1111111222222 567888887543 467788766543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.16 E-value=4.2 Score=46.98 Aligned_cols=60 Identities=8% Similarity=0.035 Sum_probs=34.8
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEE-EecCCCCCeEEEEECCCCCEEEEEeC-----C------CeeEEEECCCCC
Q 048801 257 FVITGSDDRLVKIWSMETAFCLA-SCRGHEGDITDLAVSSNNTLVASASN-----D------FVIRVWRLPDGL 318 (1715)
Q Consensus 257 ~LaTGS~DGtIrIWDl~tgk~l~-tL~gHs~~VtsLafSpDg~lLASGS~-----D------GtIrVWDl~tg~ 318 (1715)
+++.|+ ..+.+||..+.+-.. .+..........+...++.+++.|+. . ..+.+||+.+.+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~ 78 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE 78 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe
Confidence 344555 578999998876432 22222223333444557888888873 1 126778887654
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=92.79 E-value=24 Score=43.49 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=36.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE--EEeC------CCCCeEEEEecCC
Q 048801 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS--VLRG------HTGAVTAIAFSPR 338 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~--~L~g------H~~~VtsLafSPd 338 (1715)
-...+.|+|.|+|+++++-...+.|++++..++.... .+.. ..+.+..|+|+|+
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd 87 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence 4466799999999987776544578888765564322 2221 2456789999996
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=18 Score=43.25 Aligned_cols=195 Identities=13% Similarity=0.071 Sum_probs=103.1
Q ss_pred CCCeeEEEECCCCC-ceEE--EeC-----CCCCeEEEEecCC--CCcceEEEEecC--CCcEEEEecCCCCCcceecCCC
Q 048801 305 NDFVIRVWRLPDGL-PISV--LRG-----HTGAVTAIAFSPR--PSAIYQLLSSSD--DGTCRIWDARYSQYSPRIYLPK 372 (1715)
Q Consensus 305 ~DGtIrVWDl~tg~-~l~~--L~g-----H~~~VtsLafSPd--g~~~~~LaSgS~--DGtVrIWDl~tg~~l~~i~~~~ 372 (1715)
.+|.|.++|+.+.. .... +.+ ..-....|.+.++ +. .+++++-.. +.+|.+|++..+.....+...
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~-~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~- 158 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNT-VYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKT- 158 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCC-EEEEEEECSTTCCEEEEEEEETTTTEEEEEEE-
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCc-EEEEEEECCCCCCeEEEEEEECCCCEEEEEec-
Confidence 68999999987421 1222 222 2235677777663 32 223333222 567888877654221111100
Q ss_pred CCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-----------------CCCeEEEEeCCCCCccCCC
Q 048801 373 PPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS-----------------SDTFARVWSACKSSVEDSE 435 (1715)
Q Consensus 373 ~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs-----------------~DG~IrVWDl~t~~~~~~~ 435 (1715)
..+ ..-.....+++.++|.+.++.. ..|.|.-++. ++
T Consensus 159 ----~~g---------------~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~----- 212 (355)
T 3sre_A 159 ----IRH---------------KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND----- 212 (355)
T ss_dssp ----ECC---------------TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-----
T ss_pred ----ccc---------------CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-----
Confidence 000 0123468899999999877754 1244444443 11
Q ss_pred CCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccc
Q 048801 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW 515 (1715)
Q Consensus 436 ~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~ 515 (1715)
+..+...-..-+.++|+|++ ...+++-+..+.|..|++.... .+..
T Consensus 213 -----~~~~~~~l~~pNGia~spDg-------------------------~~lYvadt~~~~I~~~~~~~~g---~l~~- 258 (355)
T 3sre_A 213 -----VRVVAEGFDFANGINISPDG-------------------------KYVYIAELLAHKIHVYEKHANW---TLTP- 258 (355)
T ss_dssp -----CEEEEEEESSEEEEEECTTS-------------------------SEEEEEEGGGTEEEEEEECTTS---CEEE-
T ss_pred -----EEEeecCCcccCcceECCCC-------------------------CEEEEEeCCCCeEEEEEECCCC---cEec-
Confidence 11222223356889999987 2455666678899999886311 1100
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEEEecC-CeEEEEECC--CCceEEEEe
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLAAIMD-CRICVWNAV--DGSLVHSLT 584 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaTgs~D-GtI~IWDl~--sg~~l~tL~ 584 (1715)
.+. + ...+....+++.+ +|++.+++..+ +.|..|+.. .+..+..+.
T Consensus 259 ~~~----------------------~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 259 LRV----------------------L-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEE----------------------E-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred CEE----------------------E-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 000 1 1134567889999 59887766644 345555543 244444444
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=92.56 E-value=5.7 Score=47.52 Aligned_cols=101 Identities=12% Similarity=0.035 Sum_probs=64.0
Q ss_pred CCeeEEEeCCCCCEEEEEec-----------------CCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeC
Q 048801 546 RGVNMIVWSLDNRFVLAAIM-----------------DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGY 608 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~-----------------DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~ 608 (1715)
...+.+++.++|.++++... .|.|+.++. ++.. .+...-..-+.|+|+|++..+.++-+.
T Consensus 165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt~ 241 (355)
T 3sre_A 165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVR-VVAEGFDFANGINISPDGKYVYIAELL 241 (355)
T ss_dssp SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEE-EeecCCcccCcceECCCCCEEEEEeCC
Confidence 35788999999998887541 245655654 3332 332233446899999955566666677
Q ss_pred CCcEEEEECCC-Cce--EEEEEcccceEEEEEEcC-CCCEEEEEeC
Q 048801 609 DGRTIVWDIWE-GTP--IRIYEIGRFKLVDGKFSP-DGTSIVLSDD 650 (1715)
Q Consensus 609 DGtI~VWDl~t-gk~--l~tl~~h~~~V~svafSP-DG~~LAsgs~ 650 (1715)
.+.|..|++.. |+. .+.+. ..+..-.+++.+ +|.+.+++..
T Consensus 242 ~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 242 AHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp GTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEES
T ss_pred CCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecC
Confidence 88999999863 432 22332 234455677787 4777665543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=92.15 E-value=3.5 Score=47.75 Aligned_cols=65 Identities=11% Similarity=0.074 Sum_probs=37.7
Q ss_pred CCCCEEEEEecC------CeEEEEECCCCceEEE--EecCCCCeEEEEEccCCCcEEEEEeCCC-----cEEEEECCCCc
Q 048801 555 LDNRFVLAAIMD------CRICVWNAVDGSLVHS--LTGHSASSYVLDVHPFNPRIAMSAGYDG-----RTIVWDIWEGT 621 (1715)
Q Consensus 555 PDG~~LaTgs~D------GtI~IWDl~sg~~l~t--L~gH~~~V~sLafSP~dg~lLaSgs~DG-----tI~VWDl~tgk 621 (1715)
.++.+++.|+.+ ..+.+||+.+.+-... +........++.+ ++.+++.||.++ .+.+||+.+.+
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH---KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE---CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 467777777642 3589999987654332 1111111122222 567888887543 47788887765
Q ss_pred e
Q 048801 622 P 622 (1715)
Q Consensus 622 ~ 622 (1715)
-
T Consensus 234 W 234 (318)
T 2woz_A 234 W 234 (318)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=90.28 E-value=3.1 Score=50.69 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=76.3
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEECCCCc------------eEEEEec------CCCCeEEEEEccCCC--cEEEEE
Q 048801 547 GVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS------------LVHSLTG------HSASSYVLDVHPFNP--RIAMSA 606 (1715)
Q Consensus 547 ~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~------------~l~tL~g------H~~~V~sLafSP~dg--~lLaSg 606 (1715)
.|..+..||+|++||..+ +..|.|-.+..+. ..+.+.- ...+|..+.|||.+. ..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 577899999999999886 5588888887331 1223332 256799999999654 378888
Q ss_pred eCCCcEEEEECCCC--ceEEEEEc---------ccceEEEEEEcCCCCEEEEEe--CCCeEEEE
Q 048801 607 GYDGRTIVWDIWEG--TPIRIYEI---------GRFKLVDGKFSPDGTSIVLSD--DVGQIYLL 657 (1715)
Q Consensus 607 s~DGtI~VWDl~tg--k~l~tl~~---------h~~~V~svafSPDG~~LAsgs--~DG~I~IW 657 (1715)
..|++|++||+... ++. .+.. ....|.+++|..+|-.|.+.. ..|-|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 89999999999753 233 3321 113577889999887666644 66776643
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=89.51 E-value=46 Score=40.76 Aligned_cols=260 Identities=8% Similarity=0.058 Sum_probs=147.3
Q ss_pred CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 306 DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 306 DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
...|.|-|+.++..+..-. -..-+.-.+|..+ .|+.-. ..++.|+|+.+...+....++.
T Consensus 47 ~~~vvIiDl~~~~~~~rrp---i~AdsAIMnP~~~---iiALra-g~~lQiFnle~K~klks~~~~e------------- 106 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASK---VIALKA-GKTLQIFNIEMKSKMKAHTMTD------------- 106 (494)
T ss_dssp CCEEEEEETTSTTSCEEEE---CCCSEEEECSSSS---CEEEEE-TTEEEEEETTTTEEEEEEECSS-------------
T ss_pred CCeEEEEECCCCCcceecc---cccceeeeCCCCc---EEEEec-CCeEEEEchHHhhhhcceecCC-------------
Confidence 3478888988765543221 1122445677765 344333 6789999999887766655422
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCC----CCeeEEEEccCcc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE----NDVNYVQFSGCAV 461 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~----~~V~sLafspdg~ 461 (1715)
.|.-=.|-.+. .|+..+ +..|+-|++.... . +...+..|. ..|.....+++.
T Consensus 107 -------------~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s-----~---P~kvFdR~~~L~~~QIInY~~d~~~- 162 (494)
T 1bpo_A 107 -------------DVTFWKWISLN-TVALVT-DNAVYHWSMEGES-----Q---PVKMFDRHSSLAGCQIINYRTDAKQ- 162 (494)
T ss_dssp -------------CCCEEEEEETT-EEEEEC-SSEEEEEESSSSC-----C---CEEEEECCGGGTTCEEEEEEECTTS-
T ss_pred -------------CceEEEecCCC-eEEEEc-CCeeEEecccCCC-----C---chhheecchhcccceEEEEEECCCC-
Confidence 23333444333 344333 4689999986421 2 233333332 344444444443
Q ss_pred cccccccccccccccccccCCcccCceEEEEc-------CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-------RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-------~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
+.++..+ -.|.+.+|..+.+.
T Consensus 163 -------------------------kW~~l~GI~~~~~~v~G~mQLYS~er~~--------------------------- 190 (494)
T 1bpo_A 163 -------------------------KWLLLTGISAQQNRVVGAMQLYSVDRKV--------------------------- 190 (494)
T ss_dssp -------------------------SEEEEEEEEEETTEEEEEEEEEESTTCC---------------------------
T ss_pred -------------------------CeEEEEeecccCCcccceEEEeeccccc---------------------------
Confidence 3333222 24678888776422
Q ss_pred CCCcccccCCCCCeeEEEeCCC---CCEEEEEec---CCeEEEEECCCC---c-----eEEE-Ee---cCCCCeEEEEEc
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLD---NRFVLAAIM---DCRICVWNAVDG---S-----LVHS-LT---GHSASSYVLDVH 596 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPD---G~~LaTgs~---DGtI~IWDl~sg---~-----~l~t-L~---gH~~~V~sLafS 596 (1715)
.+.+.+|......+.+..+ ..+++.+.. .+.++|.++... . .... +- .-.+--.++..+
T Consensus 191 ---sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs 267 (494)
T 1bpo_A 191 ---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS 267 (494)
T ss_dssp ---EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE
T ss_pred ---cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEec
Confidence 1223333322222222111 112333322 368888888432 1 1111 11 123344577777
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 597 PFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 597 P~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
+ .-.++..-..-|.|++||+.+|.++..-......|...+-.....-+++....|.|.-..+.....+
T Consensus 268 ~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 268 E-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp T-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred c-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 7 4445666778999999999999999888877778887777776666777778888888888766544
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.36 E-value=11 Score=44.23 Aligned_cols=53 Identities=9% Similarity=0.082 Sum_probs=27.1
Q ss_pred cEEEEECCCCceEE--EEEcccceEEEEEEcCCCCEEEEEeCCC------eEEEEECCCCccc
Q 048801 611 RTIVWDIWEGTPIR--IYEIGRFKLVDGKFSPDGTSIVLSDDVG------QIYLLNTGQGESQ 665 (1715)
Q Consensus 611 tI~VWDl~tgk~l~--tl~~h~~~V~svafSPDG~~LAsgs~DG------~I~IWdl~tGe~~ 665 (1715)
.+.+||+.+.+-.. .+...... ..++.-++++++.|+.++ .|.++++.+++.+
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred eEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 57789987654333 22222221 222334777888887543 4566677766544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=89.25 E-value=25 Score=49.03 Aligned_cols=74 Identities=12% Similarity=0.109 Sum_probs=50.6
Q ss_pred EEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 591 YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 591 ~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
.++..++ .-.++..-+.-|.|.++|+.+|.++..-......|...+-.....-+++....|.|.-..+.....+
T Consensus 262 v~~~vs~-k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 262 VAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred eEEEecc-ccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 4566666 3345556678899999999999998766656666766555554444555567787777777655443
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=88.93 E-value=13 Score=41.59 Aligned_cols=102 Identities=12% Similarity=-0.021 Sum_probs=60.4
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEECCCCce-------EEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC
Q 048801 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL-------VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 548 VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~-------l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
..++.|.|+|.+.++ .||.|+-++..+... ...-.+--..+..|.|.| ++.+.+.. ||.++-+...++
T Consensus 90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~ 164 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVS 164 (236)
T ss_dssp CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSS
T ss_pred ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCC
Confidence 478999999998887 569998887644211 111122234678999999 66666554 787544433222
Q ss_pred c------eEEEEE-cccceEEEEEEcCCCCEEEEEeCCCeEEE
Q 048801 621 T------PIRIYE-IGRFKLVDGKFSPDGTSIVLSDDVGQIYL 656 (1715)
Q Consensus 621 k------~l~tl~-~h~~~V~svafSPDG~~LAsgs~DG~I~I 656 (1715)
. ....+- .+-....-+.|+++|.+.++. +|.|+-
T Consensus 165 ~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y~ 205 (236)
T 1tl2_A 165 NQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFYE 205 (236)
T ss_dssp TTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred CCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEEe
Confidence 1 111121 111223346799999888777 675443
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.87 E-value=10 Score=44.37 Aligned_cols=56 Identities=11% Similarity=0.047 Sum_probs=29.6
Q ss_pred eEEEEECCCCce--EEEEecCCCCeEEEEEccCCCcEEEEEeCCC------cEEEEECCCCceEEEE
Q 048801 568 RICVWNAVDGSL--VHSLTGHSASSYVLDVHPFNPRIAMSAGYDG------RTIVWDIWEGTPIRIY 626 (1715)
Q Consensus 568 tI~IWDl~sg~~--l~tL~gH~~~V~sLafSP~dg~lLaSgs~DG------tI~VWDl~tgk~l~tl 626 (1715)
.+.+||+.+.+- +..+........++.+ ++++++.||.++ .|.++++.+++.+...
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPW---NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEEE---TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEEe---CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 578899876543 3333222222223333 678888888653 3555688777766543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=87.53 E-value=1.7 Score=48.55 Aligned_cols=104 Identities=12% Similarity=0.020 Sum_probs=64.3
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEECCCCce------EEEEe--cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 547 GVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL------VHSLT--GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 547 ~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~------l~tL~--gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
.+..++|+|+|.+.++ .+|.++-.+..+... -..+- +-.. -.++.|.| ++.+.++ .||.|+-|+-.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~-~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDP-NGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECT-TSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECC-CCCEEEe--CCCEEEEeCCC
Confidence 5779999999987776 677777666644211 11111 1111 36788988 6666655 56999888753
Q ss_pred CCce-------EEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 619 EGTP-------IRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 619 tgk~-------l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
+... ...-...=..+..|.|.|+|.+-++. +|.++-+.
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~ 160 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKAL 160 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEEC
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecC
Confidence 3111 11111122457899999999988877 77765443
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.93 E-value=30 Score=41.02 Aligned_cols=118 Identities=12% Similarity=0.069 Sum_probs=65.3
Q ss_pred CEEEEEeCCCeeEEEECCCCCceEEEeCC-CCCeEEEEec--CCCCcceEEEEe-cCCCcEEEEecCCCCCcceecCCCC
Q 048801 298 TLVASASNDFVIRVWRLPDGLPISVLRGH-TGAVTAIAFS--PRPSAIYQLLSS-SDDGTCRIWDARYSQYSPRIYLPKP 373 (1715)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tg~~l~~L~gH-~~~VtsLafS--Pdg~~~~~LaSg-S~DGtVrIWDl~tg~~l~~i~~~~~ 373 (1715)
.+|+.++.||.|.-.|..+|+.+..+... ..++....-. +.+.. .++.. +.||.|..++..+|.....+..+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~--~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYE--TLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSE--EEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCc--EEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 47889999999999999999999888654 1222221110 11111 33333 6899999999887754332222100
Q ss_pred CCCccCccCCCCCCCCCCCCCCCCccee-EEEEccCCCeEEEecCCCeEEEEeCCCCCc
Q 048801 374 PDAITGKSNVPSNNGPSSSNGLQSHQIL-CCAYNANGTVFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 374 ~~~i~g~~~~~~~~~~~~~~~~h~~~Vt-slafSpdG~~LatGs~DG~IrVWDl~t~~~ 431 (1715)
... ........+|. ..--...+..+.+|+.+|.+...|+.+++.
T Consensus 89 v~~--------------SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~ 133 (339)
T 2be1_A 89 VST--------------SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI 133 (339)
T ss_dssp HTT--------------CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred eec--------------cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence 000 00000000000 000001345788899999999999998754
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=85.73 E-value=13 Score=43.29 Aligned_cols=125 Identities=10% Similarity=0.031 Sum_probs=77.0
Q ss_pred EEeCCCCCEEEEEe----cCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEE
Q 048801 551 IVWSLDNRFVLAAI----MDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY 626 (1715)
Q Consensus 551 lafSPDG~~LaTgs----~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl 626 (1715)
..|++++.+|+-.. .+..|+..++. |.....+..+.. .+|+++++.+..+......|.+-++..+.....+
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe
Confidence 36788999988776 34466667765 444555555533 3456756666666554678888898666544433
Q ss_pred EcccceEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCccccc-cccceeecCCCccEEEc
Q 048801 627 EIGRFKLVDGKFSPDGTSIVLSDDV--GQIYLLNTGQGESQKD-AKYDQFFLGDYRPLIRD 684 (1715)
Q Consensus 627 ~~h~~~V~svafSPDG~~LAsgs~D--G~I~IWdl~tGe~~k~-~~~~~~fs~D~r~L~~d 684 (1715)
. + ... ..++|+|.+|+..+.. ..|..-++..+....- .....+|.+++..|.+.
T Consensus 184 ~-~--~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~~~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 184 D-C--NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHYNVYGSLIFYQ 240 (302)
T ss_dssp C-S--CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSCEEEEEEETTEEEEE
T ss_pred C-C--Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCCcceEEECCCEEEEE
Confidence 3 2 222 2466999999977654 3677767755443221 11225688888888764
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=84.21 E-value=24 Score=40.50 Aligned_cols=108 Identities=7% Similarity=-0.001 Sum_probs=53.5
Q ss_pred EEcCCCCEEEEEeC----CC-------cEEEEeCCCCcEEEE--ecCCCCCeEEEEECCCCCEEEEEeCC-------Cee
Q 048801 250 IFDRSGRFVITGSD----DR-------LVKIWSMETAFCLAS--CRGHEGDITDLAVSSNNTLVASASND-------FVI 309 (1715)
Q Consensus 250 afSpDG~~LaTGS~----DG-------tIrIWDl~tgk~l~t--L~gHs~~VtsLafSpDg~lLASGS~D-------GtI 309 (1715)
+...++.+++.|+. ++ .+.+||..+.+-... +.........+.+ ++.+++.|+.+ ..+
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceE
Confidence 34457778888873 12 177788876643221 1111112222223 67777777754 247
Q ss_pred EEEECCCCCceEEEeCCCCCe--EEEEecCCCCcceEEEEecC------CCcEEEEecCCCCC
Q 048801 310 RVWRLPDGLPISVLRGHTGAV--TAIAFSPRPSAIYQLLSSSD------DGTCRIWDARYSQY 364 (1715)
Q Consensus 310 rVWDl~tg~~l~~L~gH~~~V--tsLafSPdg~~~~~LaSgS~------DGtVrIWDl~tg~~ 364 (1715)
.+||+.+.+-... ....... .+++. .++. .++.|+. -..+.+||+.+...
T Consensus 130 ~~yd~~~~~W~~~-~~~p~~r~~~~~~~-~~~~---iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 130 LCYDPVAAKWSEV-KNLPIKVYGHNVIS-HNGM---IYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp EEEETTTTEEEEE-CCCSSCEESCEEEE-ETTE---EEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred EEEeCCCCCEeEC-CCCCCcccccEEEE-ECCE---EEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 7888876543221 1111110 11222 2332 4555553 23588888877653
|
| >3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.11 E-value=1.3 Score=39.82 Aligned_cols=55 Identities=11% Similarity=0.289 Sum_probs=43.7
Q ss_pred HhCCCCCCcceEEeecccCCCCCceEEEEEEEcccCCCCCCCCCCceeEEEECCCCCCCCCCCccCCCC
Q 048801 1532 ISRNWTHRDKCQIWWRNANGEGGTWWKGRITKSQAKSEEFPNSPWDRYMVEYKTGDSHLHSPWEMHDPN 1600 (1715)
Q Consensus 1532 ~~~~w~~g~rf~~~~~~e~~~~~~w~~GtI~~~~~~~p~~P~S~w~~l~V~wd~~~~~~~SpWeie~~~ 1600 (1715)
|--.|++|++|...| .+.+||.++|.++... ..|.|.++.+..+.+.+=+|.+..
T Consensus 3 ~~~~~~vGd~vmArW-----~D~~yYpA~I~si~~~---------~~Y~V~F~dG~~etvk~~~ikp~~ 57 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-----SDCRFYPAKVTAVNKD---------GTYTVKFYDGVVQTVKHIHVKAFS 57 (67)
T ss_dssp --CCCCTTCEEEEEC-----TTSCEEEEEEEEECTT---------SEEEEEETTSCEEEEEGGGEEECC
T ss_pred cCcccccCCEEEEEc-----CCCCEeeEEEEEECCC---------CeEEEEEeCCceEEEeHHHcccCC
Confidence 445899999999998 2467999999998844 469999999888888877776543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=80.66 E-value=34 Score=44.51 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=42.4
Q ss_pred CCCCEEEEEecCC--eEEEEECCCCceEEEEe-----cCCCCeEEEEEccCCCcEEEEEeC--C-----CcEEEEECCCC
Q 048801 555 LDNRFVLAAIMDC--RICVWNAVDGSLVHSLT-----GHSASSYVLDVHPFNPRIAMSAGY--D-----GRTIVWDIWEG 620 (1715)
Q Consensus 555 PDG~~LaTgs~DG--tI~IWDl~sg~~l~tL~-----gH~~~V~sLafSP~dg~lLaSgs~--D-----GtI~VWDl~tg 620 (1715)
.++.+++.|+.++ .+.+||+.+.+-...-. .......++.+...++.+++.||. + ..+.+||+.+.
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 4788888887655 68999998765332211 111222335555533678888876 2 35889999877
Q ss_pred c
Q 048801 621 T 621 (1715)
Q Consensus 621 k 621 (1715)
+
T Consensus 579 ~ 579 (695)
T 2zwa_A 579 N 579 (695)
T ss_dssp C
T ss_pred c
Confidence 6
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1715 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-30 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-23 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-17 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-25 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-16 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-24 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-24 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-19 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-23 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-21 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-16 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-22 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-15 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-08 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 7e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 8e-22 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-19 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-18 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-13 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-11 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 7e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-17 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 9e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-17 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 6e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-16 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-13 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-16 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 9e-14 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-13 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 9e-16 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-14 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-12 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-10 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-13 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-13 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-13 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-08 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-11 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-10 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-09 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-10 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 7e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 4e-10 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-04 | |
| d1wuma1 | 118 | a.29.2.1 (A:715-832) P300/CAF histone acetyltransf | 5e-09 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-08 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 6e-08 | |
| d3d7ca1 | 102 | a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [T | 2e-08 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 2e-07 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 4e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-05 | |
| d1eqfa1 | 139 | a.29.2.1 (A:1359-1497) TAFII250 double bromodomain | 2e-05 | |
| d1eqfa2 | 128 | a.29.2.1 (A:1498-1625) TAFII250 double bromodomain | 4e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 5e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 2e-04 | |
| d3dwya1 | 114 | a.29.2.1 (A:1084-1197) CREB-binding protein, CBP { | 7e-05 | |
| d1k32a2 | 281 | b.68.7.1 (A:39-319) Tricorn protease N-terminal do | 0.003 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 122 bits (305), Expect = 1e-30
Identities = 72/379 (18%), Positives = 130/379 (34%), Gaps = 73/379 (19%)
Query: 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNN 297
L GHR V IF +++ S+D +K+W ET + +GH + D++ +
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71
Query: 298 TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357
L+AS S D I++W I + GH V++++ P ++S+S D T ++W
Sbjct: 72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD---HIVSASRDKTIKMW 128
Query: 358 DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS 417
+ + + N +GT+ + S+
Sbjct: 129 EVQTGYCVKTFT-------------------------GHREWVRMVRPNQDGTLIASCSN 163
Query: 418 DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477
D RVW L H + V + + +S S++S+A E
Sbjct: 164 DQTVRVWVV---------ATKECKAELREHRHVVECISW--APESSYSSISEATGSETKK 212
Query: 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537
K F + SRD + +W + G
Sbjct: 213 SGKPGPFLL----SGSRDKTIKMWDVST-----------------------------GMC 239
Query: 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHP 597
L+ V +++ +F+L+ D + VW+ + + +L H LD H
Sbjct: 240 LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK 299
Query: 598 FNPRIAMSAGYDGRTIVWD 616
P + + D VW+
Sbjct: 300 TAPYVV-TGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 101 bits (252), Expect = 1e-23
Identities = 55/375 (14%), Positives = 98/375 (26%), Gaps = 73/375 (19%)
Query: 282 RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSA 341
GH +T + +++ SAS D I+VW G L+GHT +V I+F
Sbjct: 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73
Query: 342 IYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQIL 401
+ + + H +
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHD----------------------------HNVS 105
Query: 402 CCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAV 461
+ NG V+ S D ++W Q + + +GH V V+ +
Sbjct: 106 SVSIMPNGDHIVSASRDKTIKMWEV---------QTGYCVKTFTGHREWVRMVRPN---- 152
Query: 462 ASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHL 521
I +CS D + +W+ + L
Sbjct: 153 ----------------------QDGTLIASCSNDQTVRVWVVAT---------KECKAEL 181
Query: 522 KVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVH 581
+ + + G F+L+ D I +W+ G +
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241
Query: 582 SLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPD 641
+L GH + H I S D VWD ++ + F
Sbjct: 242 TLVGHDNWVRGVLFHSGGKFIL-SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT 300
Query: 642 GTSIVLSDDVGQIYL 656
+V + +
Sbjct: 301 APYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 82.5 bits (202), Expect = 3e-17
Identities = 54/292 (18%), Positives = 105/292 (35%), Gaps = 43/292 (14%)
Query: 210 HHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKI 269
H + S + Q + I+ + GH V +G +++ S D+ +K+
Sbjct: 68 DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127
Query: 270 WSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGA 329
W ++T +C+ + GH + + + + TL+AS SND +RVW + + LR H
Sbjct: 128 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 187
Query: 330 VTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGP 389
V I+++P S ++ + + R K D TG
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--------C 239
Query: 390 SSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN 449
+ + + +++ G ++ + D RVW +++ + L+ HE+
Sbjct: 240 LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY------KNKRCMK---TLNAHEH 290
Query: 450 DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW 501
V + F A +VT S D + +W
Sbjct: 291 FVTSLDFHKTA--------------------------PYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.3 bits (160), Expect = 8e-12
Identities = 33/297 (11%), Positives = 73/297 (24%), Gaps = 57/297 (19%)
Query: 395 LQSHQ--ILCCAYNANGTVFVTGSSDTFARVWSA----CKSSVEDSEQPIHELDVLSGHE 448
L H+ + ++ +V V+ S D +VW + +++ + ++ +
Sbjct: 13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72
Query: 449 NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN---IVTCSRDGSAIIWIPRS 505
+ + +S N IV+ SRD + +W ++
Sbjct: 73 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 132
Query: 506 RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM 565
M+ + D + +
Sbjct: 133 GYCVKTFTGHREWVR-----------------------------MVRPNQDGTLIASCSN 163
Query: 566 DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIA-------------------MSA 606
D + VW L H + P + + +S
Sbjct: 164 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 223
Query: 607 GYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663
D +WD+ G + + F G I+ D + + +
Sbjct: 224 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 280
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.4 bits (111), Expect = 9e-06
Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 1/124 (0%)
Query: 533 PRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYV 592
PR + L V +++ +++A D I VW+ G +L GH+ S
Sbjct: 5 PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD 64
Query: 593 LDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG 652
+ +A + + ++ + P+G IV +
Sbjct: 65 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH-DHNVSSVSIMPNGDHIVSASRDK 123
Query: 653 QIYL 656
I +
Sbjct: 124 TIKM 127
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 107 bits (266), Expect = 3e-25
Identities = 46/380 (12%), Positives = 115/380 (30%), Gaps = 36/380 (9%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
LRGH +V +VITG+DD++++++ L GH+G + L +
Sbjct: 8 LRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 66
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
LV+ +++ V ++ + ++ S D T +W
Sbjct: 67 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI--VTGSRDNTLHVWK 124
Query: 359 ARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD 418
P + P L+ H + +G + V+GS D
Sbjct: 125 LPKESSVPDHGEEHDYPLV----FHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD 180
Query: 419 TFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478
VW + + + ++++ + R + + +
Sbjct: 181 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 240
Query: 479 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPR 538
+ + +A R ++ +++ +
Sbjct: 241 GHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHT------------------ 282
Query: 539 QRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHS-LTGHSASSYVLDVHP 597
++ I + +L + + + ++N G LVH+ + + + ++
Sbjct: 283 --------NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG 334
Query: 598 FNPRIAMSAGYDGRTIVWDI 617
+ + DG++ + +
Sbjct: 335 --KTLVAAVEKDGQSFLEIL 352
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 80.3 bits (196), Expect = 3e-16
Identities = 45/381 (11%), Positives = 102/381 (26%), Gaps = 40/381 (10%)
Query: 279 ASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPR 338
+ RGH + + + V + ++D +IRV+ + + L GH G V A+ ++
Sbjct: 6 TTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64
Query: 339 PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH 398
L+S S D T R+WD + +
Sbjct: 65 ----GILVSGSTDRTVRVWDIKKGCCTHVFEGHNST-----------------------V 97
Query: 399 QILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSG 458
+ L N VTGS D VW E + + + + + +
Sbjct: 98 RCLDIVEYKNIKYIVTGSRDNTLHVWKL------PKESSVPDHGEEHDYPLVFHTPEENP 151
Query: 459 CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVT--CSRDGSAIIWIPRSRRSHGKVGRWT 516
V + + + +DN + + +
Sbjct: 152 YFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH 211
Query: 517 RAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD 576
+ + + ++ + L + +
Sbjct: 212 ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAN 271
Query: 577 GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLV-D 635
H+ S + + + + +G + + ++++ G + + +
Sbjct: 272 DYSRKFSYHHTNLSAITTFYVSDNILV--SGSENQFNIYNLRSGKLVHANILKDADQIWS 329
Query: 636 GKFSPDGTSIVLSDDVGQIYL 656
F + D GQ +L
Sbjct: 330 VNFKGKTLVAAVEKD-GQSFL 349
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.5 bits (142), Expect = 1e-09
Identities = 7/94 (7%), Positives = 30/94 (31%), Gaps = 5/94 (5%)
Query: 270 WSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI-SVLRGHTG 328
+ H +++ + + + + ++ ++ L G + + +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 325
Query: 329 AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS 362
+ ++ F + + + DG + +S
Sbjct: 326 QIWSVNFKGK----TLVAAVEKDGQSFLEILDFS 355
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.4 bits (126), Expect = 1e-07
Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 3/106 (2%)
Query: 210 HHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKI 269
+ + A + K H + F S +++GS+++ I
Sbjct: 249 LRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ-FNI 307
Query: 270 WSMETAFCLAS-CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL 314
+++ + + + I + TLVA+ D + L
Sbjct: 308 YNLRSGKLVHANILKDADQIWSVNF-KGKTLVAAVEKDGQSFLEIL 352
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.5 bits (103), Expect = 8e-05
Identities = 16/123 (13%), Positives = 40/123 (32%)
Query: 552 VWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGR 611
++ +V+ D I V+++++ + L+GH + L ++ S R
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVR 77
Query: 612 TIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKYD 671
T + + +D + IV +++ + S D +
Sbjct: 78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 137
Query: 672 QFF 674
+
Sbjct: 138 HDY 140
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.2 bits (97), Expect = 4e-04
Identities = 38/282 (13%), Positives = 78/282 (27%), Gaps = 11/282 (3%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEG-DI 288
+ + +L GH V+ + G V +D + + +
Sbjct: 40 SINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRC 99
Query: 289 TDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348
D+ N + + S D + VW+LP +
Sbjct: 100 LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG---- 155
Query: 349 SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN 408
+ R I + D +V +G + +I Y+
Sbjct: 156 --VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHE 212
Query: 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468
++ S DT R+W + + Q L L + + ++ A
Sbjct: 213 RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 272
Query: 469 DAFKEENVPKFKNS---WFCHDNIVTCSRDGSAIIWIPRSRR 507
+ K ++ ++ DNI+ + I+ RS +
Sbjct: 273 YSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGK 314
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 104 bits (260), Expect = 2e-24
Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 5/131 (3%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKI--WSMETAFCLASCRGHEGD 287
V++ + GH + F +G TGSDD ++ + S
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272
Query: 288 ITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLS 347
IT ++ S + L+ + +DF VW VL GH V+ + + + +
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM---AVAT 329
Query: 348 SSDDGTCRIWD 358
S D +IW+
Sbjct: 330 GSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 103 bits (257), Expect = 3e-24
Identities = 61/385 (15%), Positives = 115/385 (29%), Gaps = 88/385 (22%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDL 291
+M+ + LRGH +Y + R +++ S D + IW T + + +
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 292 AVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD 351
A + + VA D + ++ L + T R Q+++SS D
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163
Query: 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTV 411
TC +WD Q + + ++ + + +
Sbjct: 164 TTCALWDIETGQQTTTFTG-------------------------HTGDVMSLSLAPDTRL 198
Query: 412 FVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471
FV+G+ D A++W +GHE+D+N + F
Sbjct: 199 FVSGACDASAKLWDV------REGMCRQ---TFTGHESDINAICFFPN------------ 237
Query: 472 KEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531
+ T S D + ++ R+ +
Sbjct: 238 --------------GNAFATGSDDATCRLFDLRADQELMTYSHD---------------- 267
Query: 532 PPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSY 591
G+ + +S R +LA D VW+A+ L GH
Sbjct: 268 -----------NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316
Query: 592 VLDVHPFNPRIAMSAGYDGRTIVWD 616
L V +A + +D +W+
Sbjct: 317 CLGVTDDGMAVA-TGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 90.6 bits (223), Expect = 1e-19
Identities = 45/267 (16%), Positives = 82/267 (30%), Gaps = 30/267 (11%)
Query: 161 SGSFSLLECDRSMKYKQVKPLPAYLRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCSAC 220
+ +++ + L+ L+ + + ++
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 221 YAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLAS 280
++ Q GH V R ++G+ D K+W + C +
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221
Query: 281 CRGHEGDITDLAVSSNNTLVASASNDFVIRV--WRLPDGLPISVLRGHTGAVTAIAFSPR 338
GHE DI + N A+ S+D R+ R L +T+++FS
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 339 PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH 398
LL+ DD C +WDA + G N
Sbjct: 282 GR---LLLAGYDDFNCNVWDALK---------ADRAGVLAGHDN---------------- 313
Query: 399 QILCCAYNANGTVFVTGSSDTFARVWS 425
++ C +G TGS D+F ++W+
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 69.0 bits (167), Expect = 1e-12
Identities = 32/273 (11%), Positives = 73/273 (26%), Gaps = 24/273 (8%)
Query: 395 LQSHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVN 452
L+ H I + + + V+ S D +W + + +++ + + V
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT---------NKVHAIPLRSSWVM 101
Query: 453 YVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKV 512
++ D K + + + +
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 572
G T A G V + + D R ++ D +W
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGD----------VMSLSLAPDTRLFVSGACDASAKLW 211
Query: 573 NAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFK 632
+ +G + TGH + + P A + D ++D+ + Y
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFA-TGSDDATCRLFDLRADQELMTYSHDNII 270
Query: 633 --LVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663
+ FS G ++ D + + + +
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 102 bits (253), Expect = 2e-23
Identities = 57/403 (14%), Positives = 112/403 (27%), Gaps = 63/403 (15%)
Query: 221 YAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLAS 280
Y + P+ + + K H V C F G ++ TG + +++ + +A
Sbjct: 40 YILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKT-TQVYRVSDGSLVAR 98
Query: 281 CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPS 340
D + NT + +S+ ++ V PD G A A R
Sbjct: 99 LSDDSAANKD--PENLNTSSSPSSDLYIRSVCFSPD--------GKFLATGAEDRLIRIW 148
Query: 341 AIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400
I + L T + S + ++
Sbjct: 149 DIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT 208
Query: 401 LCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460
+G GS D RVW + + + +E +GH++ V V F+
Sbjct: 209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE--SGTGHKDSVYSVVFTR-- 264
Query: 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYH 520
++V+ S D S +W ++ +
Sbjct: 265 ------------------------DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300
Query: 521 LKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLV 580
V + + ++ ++L+ D + W+ G+ +
Sbjct: 301 EVTYIGH-----------------KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343
Query: 581 HSLTGHS------ASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617
L GH A + + P A + D + +W
Sbjct: 344 LMLQGHRNSVISVAVANGSSLGPEYNVFA-TGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 96.0 bits (237), Expect = 2e-21
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 15/139 (10%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA------------FCLASCRGH 284
+ GH+D+VY +F R G+ V++GS DR VK+W+++ A C + GH
Sbjct: 248 ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 307
Query: 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQ 344
+ + +A + N+ + S S D + W G P+ +L+GH +V ++A + S +
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367
Query: 345 ---LLSSSDDGTCRIWDAR 360
+ S D RIW +
Sbjct: 368 YNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.5 bits (202), Expect = 8e-17
Identities = 54/299 (18%), Positives = 95/299 (31%), Gaps = 52/299 (17%)
Query: 210 HHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKI 269
+ + ++ + + L+GH +Y + SG +++GS DR V+I
Sbjct: 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189
Query: 270 WSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG-------LPISV 322
W + T C + +G T + +A+ S D +RVW G
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249
Query: 323 LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSN 382
GH +V ++ F+ ++S S D + ++W+ + + P
Sbjct: 250 GTGHKDSVYSVVFTRDGQ---SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG 306
Query: 383 VPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442
+L A N ++GS D W S P+
Sbjct: 307 -------------HKDFVLSVATTQNDEYILSGSKDRGVLFWDK------KSGNPLL--- 344
Query: 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW 501
+L GH N V V + + ++ T S D A IW
Sbjct: 345 MLQGHRNSVISVAVANGSSLGPE--------------------YNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.1 bits (193), Expect = 8e-16
Identities = 53/397 (13%), Positives = 113/397 (28%), Gaps = 64/397 (16%)
Query: 289 TDLAVSSNNTLVASASND-FVIRVWRLPDGLPISVLR--GHTGAVTAIAFSPRPSAIYQL 345
DL S + +ND +++ LP + + + + HT V + FS +
Sbjct: 21 LDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG----EY 76
Query: 346 LSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAY 405
L++ + T +++ R+ N N +SS+ I +
Sbjct: 77 LATGCNKTTQVYRVSDGSLVARLSDDSAA-------NKDPENLNTSSSPSSDLYIRSVCF 129
Query: 406 NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465
+ +G TG+ D R+W + Q + + + + R
Sbjct: 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189
Query: 466 AMSDAFKEENVPKFKNSWFCH-------DNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRA 518
+ ++ I S D + +W + ++
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD----- 244
Query: 519 YHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS 578
+ V +V++ D + V++ +D + +WN + +
Sbjct: 245 -----------------SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 287
Query: 579 LV----------HSLTGHSASSYVLDV--HPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY 626
+T +VL V + I S D + WD G P+ +
Sbjct: 288 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL-SGSKDRGVLFWDKKSGNPLLML 346
Query: 627 EIGRFKLV-------DGKFSPDGTSIVLSDDVGQIYL 656
+ G V P+ + +
Sbjct: 347 Q-GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 98.4 bits (243), Expect = 5e-22
Identities = 42/410 (10%), Positives = 98/410 (23%), Gaps = 90/410 (21%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR------GHEGDITDLA 292
+ H ++ F ++ S D +K+W + H+ + +
Sbjct: 10 GKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67
Query: 293 V-------SSNNTLVASASNDFVIRVWRLPDGLPISVLRGHT----------GAVTAIAF 335
V + LVA+ S + +R+ + + A+ +
Sbjct: 68 VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127
Query: 336 SPRPSAIYQ--LLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393
+ L+++ GT IW + + V S PS
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF- 186
Query: 394 GLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNY 453
+ G + TG ++ ++ + + H + S V +
Sbjct: 187 ------ATSVDISERGLI-ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239
Query: 454 VQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG 513
+ S ++G
Sbjct: 240 -----------------------------SPQGSLLAIAHDSNSFGCITLYETEFGERIG 270
Query: 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 573
+ H V + ++ + +A D ++ W+
Sbjct: 271 SLSVPTH-------------SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 317
Query: 574 AVDGSLVHSLTGHSAS-SYVLDVHPFNPRIAMSAGYDGRTI----VWDIW 618
+ +L H D+ + G ++ V+D+
Sbjct: 318 VKTKERITTLNMHCDDIEIEEDILAVDE--------HGDSLAEPGVFDVK 359
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 78.7 bits (192), Expect = 1e-15
Identities = 34/385 (8%), Positives = 87/385 (22%), Gaps = 56/385 (14%)
Query: 320 ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITG 379
+ + H + +++ +S S DG ++WD +
Sbjct: 7 ANAGKAHDADIFSVSACNS-----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61
Query: 380 KSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIH 439
+ + + T S + E +
Sbjct: 62 GLHHVDVLQAIERDAF------------ELCLVATTSFSGDLLFYR-ITREDETKKVIFE 108
Query: 440 ELDVLS--GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGS 497
+LD+L ++ +++ S A + D + + + S
Sbjct: 109 KLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS 168
Query: 498 AIIWIPRSRRSHGKVGRWTRA---------------YHLKVPPPPLPPQPPRGGPRQRLL 542
+ + + S ++ + +++ + ++
Sbjct: 169 PTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMI 228
Query: 543 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD----------------GSLVHSLTGH 586
+ + +S + A + H
Sbjct: 229 NNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 288
Query: 587 SASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE----IGRFKLVDGKFSPDG 642
S+ L + + AG+DG+ WD+ I + G
Sbjct: 289 SSWVMSLSFNDSGETLCS-AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 347
Query: 643 TSIVLSDDVGQIYLLNTGQGESQKD 667
S+ +L + D
Sbjct: 348 DSLAEPGVFDVKFLKKGWRSGMGAD 372
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.9 bits (130), Expect = 5e-08
Identities = 22/124 (17%), Positives = 37/124 (29%), Gaps = 7/124 (5%)
Query: 217 CSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF 276
I S Q H V F+ SG + + D ++ W ++T
Sbjct: 263 TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 322
Query: 277 CLASCRGHEGDI----TDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTA 332
+ + H DI LAV + +A V V L G + ++
Sbjct: 323 RITTLNMHCDDIEIEEDILAVDEHGDSLAEPG---VFDVKFLKKGWRSGMGADLNESLCC 379
Query: 333 IAFS 336
+
Sbjct: 380 VCLD 383
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.9 bits (112), Expect = 7e-06
Identities = 14/146 (9%), Positives = 38/146 (26%), Gaps = 16/146 (10%)
Query: 229 MVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSM---------------- 272
+ ++ + + +++ F G + D ++
Sbjct: 217 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 276
Query: 273 ETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTA 332
++ H + L+ + + + SA D +R W + I+ L H +
Sbjct: 277 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI 336
Query: 333 IAFSPRPSAIYQLLSSSDDGTCRIWD 358
L+ +
Sbjct: 337 EEDILAVDEHGDSLAEPGVFDVKFLK 362
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.8 bits (239), Expect = 8e-22
Identities = 62/398 (15%), Positives = 110/398 (27%), Gaps = 86/398 (21%)
Query: 270 WSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGA 329
W +GH+ + + + S S+D ++VW G + L GHTG
Sbjct: 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 330 VTAIAFSP----RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSN--- 382
V + S L + + I + R ++G +
Sbjct: 60 VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119
Query: 383 -VPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHEL 441
V + L H +G V+G+ D +VW + L
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP---------ETETCL 170
Query: 442 DVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW 501
L GH N V +QF G ++V+ S D S +W
Sbjct: 171 HTLQGHTNRVYSLQFDG----------------------------IHVVSGSLDTSIRVW 202
Query: 502 IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL--DNRF 559
+ T G + + +
Sbjct: 203 DVE---------------------------------TGNCIHTLTGHQSLTSGMELKDNI 229
Query: 560 VLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE 619
+++ D + +W+ G + +L G + + FN +++ DG +WD+
Sbjct: 230 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 289
Query: 620 GTPIRIYEIGRFKLVDG-----KFSPDGTSIVLSDDVG 652
G IR G + S + G
Sbjct: 290 GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.7 bits (218), Expect = 4e-19
Identities = 58/402 (14%), Positives = 120/402 (29%), Gaps = 82/402 (20%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDIT 289
++++ K L+GH D V G +++GSDD +K+WS T CL + GH G +
Sbjct: 3 RGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 61
Query: 290 DLAVSSNNTLVASASNDFVIRVWRLPD------GLPISVLRGHTGAVTAIAFSPRPSAIY 343
+ N + S + + G +V H ++ S +
Sbjct: 62 SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRV 121
Query: 344 QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCC 403
+ + + + A V + + LQ H
Sbjct: 122 WDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY 181
Query: 404 AYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVAS 463
+ +G V+GS DT RVW + + + L+GH++ + ++
Sbjct: 182 SLQFDGIHVVSGSLDTSIRVWDV---------ETGNCIHTLTGHQSLTSGMELKD----- 227
Query: 464 RSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523
+ +V+ + D + IW ++ + + +
Sbjct: 228 -----------------------NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS--- 261
Query: 524 PPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL 583
+ + FV+ + D + +W+ G + +L
Sbjct: 262 -------------------------AVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 296
Query: 584 T-----GHSASSYVLDVHPFNPRIAMSAGYDG----RTIVWD 616
G + + A +G + +V D
Sbjct: 297 VTLESGGSGGVVWRIRASNTKLVCA-VGSRNGTEETKLLVLD 337
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.6 bits (210), Expect = 3e-18
Identities = 39/348 (11%), Positives = 95/348 (27%), Gaps = 48/348 (13%)
Query: 291 LAVSSNNTLVASASNDFVIRVWRLPD-GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS 349
V+++ + + +P I+ L H V A+ S + + +
Sbjct: 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNP----TRHVYTG 69
Query: 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG 409
G ++WD + + + + + I C +G
Sbjct: 70 GKGCVKVWDISHPGNKSPVSQLDCLN--------------------RDNYIRSCKLLPDG 109
Query: 410 TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSD 469
+ G + +W + + + C A+ D
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
Query: 470 AFKEENVPKFKNSWFCHD---------NIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYH 520
+ V +F+ + T D + W R R + ++ +
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229
Query: 521 LKVPPP-----------PLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRI 569
L P + + +L V + ++ ++ ++ D +
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLL 289
Query: 570 CVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617
W G+ + S+S D+ + I + D + V+++
Sbjct: 290 NAWRTPYGASIFQS-KESSSVLSCDISVDDKYIV-TGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.6 bits (171), Expect = 3e-13
Identities = 22/193 (11%), Positives = 49/193 (25%), Gaps = 5/193 (2%)
Query: 169 CDRSMKYKQVKPLPAYLRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPST 228
S W V G + +
Sbjct: 150 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209
Query: 229 MVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288
+ + ++ + +G ++ G + V++ + HE +
Sbjct: 210 WDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCV 268
Query: 289 TDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348
L + S D ++ WR P G I + +V + S +++
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK---YIVTG 324
Query: 349 SDDGTCRIWDARY 361
S D +++ Y
Sbjct: 325 SGDKKATVYEVIY 337
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.2 bits (157), Expect = 2e-11
Identities = 43/343 (12%), Positives = 77/343 (22%), Gaps = 67/343 (19%)
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLA-----SCRGHEGDITDLAVSS 295
H + V R V TG VK+W + + C + I +
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 296 NNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355
+ + + +W L P + A A + P + SD
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG 415
+ + C + +GT TG
Sbjct: 168 WDLHNQTLVRQFQG--------------------------HTDGASCIDISNDGTKLWTG 201
Query: 416 SSDTFARVWSACKSSVE---DSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFK 472
D R W + D I L E ++ S V +
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261
Query: 473 EENVPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPP 530
+ + F + V+ +D W
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY------------------------- 296
Query: 531 QPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 573
G V S+D+++++ D + V+
Sbjct: 297 -----GASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 3e-06
Identities = 33/296 (11%), Positives = 70/296 (23%), Gaps = 25/296 (8%)
Query: 370 LPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKS 429
+P PPDA+ G +P + ++ + + TG +VW
Sbjct: 26 VPFPPDALIG-PGIPRHARQINTLN-HGEVVCAVTISNPTRHVYTGGKGC-VKVWDISHP 82
Query: 430 SVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVASRSAMSDAFKEENVPKFKNSWFCHD 487
++ P+ +LD +N + + GC + S +
Sbjct: 83 ---GNKSPVSQLD-CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT 138
Query: 488 NIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG 547
+ + H + + G
Sbjct: 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID---ISNDG 195
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607
+ LDN + + R + ++ + L P +A+
Sbjct: 196 TKLWTGGLDNTVRSWDLREGRQLQQH-----------DFTSQIFSLGYCPTGEWLAVGME 244
Query: 608 YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663
++ + KF+ G V + + T G
Sbjct: 245 SSNVEVLHVNKPDKYQLHLHESCVLSL--KFAYCGKWFVSTGKDNLLNAWRTPYGA 298
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (112), Expect = 7e-06
Identities = 34/219 (15%), Positives = 57/219 (26%), Gaps = 31/219 (14%)
Query: 207 FKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRL 266
+ S C + +++ +GH D C G + TG D
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206
Query: 267 VKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGH 326
V+ W + I L +A + V + L H
Sbjct: 207 VRSWDLREGRQ-LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-DKYQLHLH 264
Query: 327 TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386
V ++ F+ +S+ D W Y I+ K ++
Sbjct: 265 ESCVLSLKFAYCGK---WFVSTGKDNLLNAWRTPYGA---SIFQSKESSSVL-------- 310
Query: 387 NGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWS 425
C + + VTGS D A V+
Sbjct: 311 ---------------SCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 30/277 (10%), Positives = 51/277 (18%), Gaps = 50/277 (18%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
+ + G +I G + + IW + A++ +
Sbjct: 93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
S + V + A D+
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212
Query: 359 ARYSQ--------------YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCA 404
Q Y P + + N L +L
Sbjct: 213 REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLK 272
Query: 405 YNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASR 464
+ G FV+ D W I + + V S
Sbjct: 273 FAYCGKWFVSTGKDNLLNAWRT------PYGASIFQS----KESSSVLSCDISVDD---- 318
Query: 465 SAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW 501
IVT S D A ++
Sbjct: 319 ----------------------KYIVTGSGDKKATVY 333
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 82.6 bits (202), Expect = 3e-17
Identities = 35/333 (10%), Positives = 70/333 (21%), Gaps = 41/333 (12%)
Query: 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQL 345
G L + + + + + + H+ T SP Y
Sbjct: 18 GTAVVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSG---YYC 73
Query: 346 LSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAY 405
S G RIWD + + + +P +GP S A
Sbjct: 74 ASGDVHGNVRIWDTTQTTHILKTT-------------IPVFSGPVKDISWDSESKRIAAV 120
Query: 406 NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465
F + + + +
Sbjct: 121 GEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK 180
Query: 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPP 525
S + + DG+ +++ G +
Sbjct: 181 FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV----- 235
Query: 526 PPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG 585
V + WS D + +A D I +WN + ++
Sbjct: 236 -----------------AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV 278
Query: 586 HS-ASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617
+ L + + S +G +
Sbjct: 279 GTRIEDQQLGIIWTKQALV-SISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.1 bits (133), Expect = 1e-08
Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 1/104 (0%)
Query: 210 HHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKI 269
Y + + K H +V+ + G + + S D+ +KI
Sbjct: 205 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI 264
Query: 270 WSMETAFCLASCRGHEG-DITDLAVSSNNTLVASASNDFVIRVW 312
W++ T + + L + + S S + I
Sbjct: 265 WNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.4 bits (126), Expect = 9e-08
Identities = 41/332 (12%), Positives = 76/332 (22%), Gaps = 41/332 (12%)
Query: 328 GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387
G + +P + + + + T
Sbjct: 18 GTAVVLGNTPAG----DKIQYCNGTSVYTVPVGS---------LTDTEIYTE-------- 56
Query: 388 GPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGH 447
SHQ + +G +G R+W + ++ +
Sbjct: 57 --------HSHQTTVAKTSPSGYYCASGDVHGNVRIW-------DTTQTTHILKTTIPVF 101
Query: 448 ENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 507
V + + + + + +V F + S R R
Sbjct: 102 SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFR 161
Query: 508 SHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC 567
T A P + P G D V + +
Sbjct: 162 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV---LYNG 218
Query: 568 RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE 627
V HS S + L P +IA SA D +W++ +
Sbjct: 219 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA-SASADKTIKIWNVATLKVEKTIP 277
Query: 628 IG-RFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658
+G R + ++V G I +N
Sbjct: 278 VGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.4 bits (121), Expect = 4e-07
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 4/90 (4%)
Query: 270 WSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTG- 328
+ H G + L S + T +ASAS D I++W + + T
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 329 AVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
+ L+S S +G +
Sbjct: 283 EDQQLGIIWTKQ---ALVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.3 bits (118), Expect = 1e-06
Identities = 26/267 (9%), Positives = 61/267 (22%), Gaps = 14/267 (5%)
Query: 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVAS 302
R +G + + V + + H T S + AS
Sbjct: 17 RGTAVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS 75
Query: 303 ASNDFVIRVWRLPDG--LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360
+R+W + + + +G V I++ I + +
Sbjct: 76 GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 135
Query: 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTF 420
+ + +++ K + P S + + + T +
Sbjct: 136 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV 195
Query: 421 ARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFK 480
+ + I + + G + V
Sbjct: 196 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN-----------VAHSGSVFGL 244
Query: 481 NSWFCHDNIVTCSRDGSAIIWIPRSRR 507
I + S D + IW + +
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLK 271
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.3 bits (118), Expect = 1e-06
Identities = 35/299 (11%), Positives = 82/299 (27%), Gaps = 62/299 (20%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIW--SMETAFCLASCRGHEGD 287
V + + + H A SG + +G V+IW + T + G
Sbjct: 45 VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGP 104
Query: 288 ITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLS 347
+ D++ S + +A+ S A + +PS ++++S
Sbjct: 105 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIIS 164
Query: 348 SSDDGTCRIWDARYSQYSP-------------------------RIYLPKPPDAITGKSN 382
SDD T I++ ++ + + G
Sbjct: 165 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 224
Query: 383 VPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442
+ + ++ +GT + S+D ++W+ + + +
Sbjct: 225 GVFEDDSLKNVAHSGSVF-GLTWSPDGTKIASASADKTIKIWNV------ATLKVEKTIP 277
Query: 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW 501
V + E+ + ++ +V+ S +G
Sbjct: 278 VGTRIEDQQLGIIWTK----------------------------QALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.2 bits (97), Expect = 3e-04
Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 3/78 (3%)
Query: 544 TPRGVNMIV-WSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRI 602
T RG +++ + + + + T HS + V P
Sbjct: 15 TARGTAVVLGNTPAGD-KIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYC 73
Query: 603 AMSAGYDGRTIVWDIWEG 620
S G +WD +
Sbjct: 74 -ASGDVHGNVRIWDTTQT 90
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.3 bits (201), Expect = 4e-17
Identities = 45/340 (13%), Positives = 81/340 (23%), Gaps = 40/340 (11%)
Query: 286 GDITDLAVSSNNTLVASASND-FVIRVWRLPDG--LPISVLRGH-TGAVTAIAFSPRPSA 341
T L+ +A +R D P+ GH + VT + FSP +
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 342 IYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQIL 401
Y L S + G +W K + S + + I
Sbjct: 78 QY-LCSGDESGKVIVWGWT-----------------FDKESNSVEVNVKSEFQVLAGPIS 119
Query: 402 CCAYNANGT--VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGC 459
+++ G V D F S + E+ S N + Q
Sbjct: 120 DISWDFEGRRLCVVGEGRDNFGVFISWDS------GNSLGEVSGHSQRINACHLKQSRPM 173
Query: 460 AVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAY 519
+ + P ++ + R +
Sbjct: 174 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF 233
Query: 520 HLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL 579
K + + + + LD++ D I VW+
Sbjct: 234 DGKSGEFLKYIEDDQEPVQGG--------IFALSWLDSQKFATVGADATIRVWDVTTSKC 285
Query: 580 VHSLTGHSASSYV--LDVHPFNPRIAMSAGYDGRTIVWDI 617
V T + V +S DG +++
Sbjct: 286 VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.5 bits (142), Expect = 1e-09
Identities = 18/149 (12%), Positives = 44/149 (29%), Gaps = 3/149 (2%)
Query: 169 CDRSMKYKQVKPLPAYLRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPST 228
P + + G +R++ +V S
Sbjct: 177 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 236
Query: 229 MVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288
+ ++ I+ + A+ + T D +++W + T+ C+ + +
Sbjct: 237 SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL 296
Query: 289 TDLAVS---SNNTLVASASNDFVIRVWRL 314
+ V + N + S S D + + L
Sbjct: 297 GNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.2 bits (136), Expect = 6e-09
Identities = 18/176 (10%), Positives = 42/176 (23%), Gaps = 4/176 (2%)
Query: 187 WPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAV 246
+ H + + R+ +V + + + + V
Sbjct: 149 GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFV 208
Query: 247 YCA----IFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVAS 302
V + S E + + ++ A+
Sbjct: 209 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFAT 268
Query: 303 ASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
D IRVW + + + + +++S S DGT ++
Sbjct: 269 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.6 bits (124), Expect = 2e-07
Identities = 34/341 (9%), Positives = 78/341 (22%), Gaps = 36/341 (10%)
Query: 324 RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383
T +++ P +AI R D S+ P +
Sbjct: 14 STQRNFTTHLSYDPTTNAI--AYPCGKSAFVRCLDDGDSKVPPVVQF------------- 58
Query: 384 PSNNGPSSSNGLQSHQILCCAY--NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHEL 441
G S + + +G VW E + ++
Sbjct: 59 ---------TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG-WTFDKESNSVEVNVK 108
Query: 442 DVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW 501
++ + + R + ++ V+ I
Sbjct: 109 SEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQR--INA 164
Query: 502 IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561
+ + + P + R V S + +
Sbjct: 165 CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV 224
Query: 562 AAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621
+ + + + + + + + G D VWD+
Sbjct: 225 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK 284
Query: 622 PIRIYEIGRFKL----VDGKFSPDGTSIVLSDDVGQIYLLN 658
++ + + + +L V + +G I LS D G +
Sbjct: 285 CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD-GTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 2e-05
Identities = 30/306 (9%), Positives = 71/306 (23%), Gaps = 67/306 (21%)
Query: 231 QKMQNIKKLRGHR-DAVYCAIF--DRSGRFVITGSDDRLVKIWSMET--------AFCLA 279
K+ + + GH V F + +++ +G + V +W +
Sbjct: 50 SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKS 109
Query: 280 SCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRP 339
+ G I+D++ + + S+ + A +
Sbjct: 110 EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQ 169
Query: 340 SAIYQLLSSSDDGTCRIWDARYSQ------------------------YSPRIYLPKPPD 375
S + ++ DDG+ + + I +
Sbjct: 170 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK 229
Query: 376 AITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE 435
+ + + F T +D RVW +
Sbjct: 230 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV------TTS 283
Query: 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD 495
+ + + L + V + I++ S D
Sbjct: 284 KCVQKW-TLDKQQLGNQQVGV-------------------------VATGNGRIISLSLD 317
Query: 496 GSAIIW 501
G+ +
Sbjct: 318 GTLNFY 323
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 81.8 bits (200), Expect = 1e-16
Identities = 45/386 (11%), Positives = 93/386 (24%), Gaps = 43/386 (11%)
Query: 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET--AFCLASCRGHEGDITDLAVSSNNTL 299
+ + C +++ + ++ V I+ + + H G +T + + ++
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 300 VASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
+ + D VW L L A P+ S I
Sbjct: 66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKF-AVGSGSRVISICYF 124
Query: 360 RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT 419
K P T S N + S C ++A + T
Sbjct: 125 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA--GSCDFKCRIFSAYIKEVEERPAPT 182
Query: 420 FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKF 479
+ +S + + N S + + +
Sbjct: 183 PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE 242
Query: 480 KNSWFCH-----DNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534
++V D +++ S G+ + L V
Sbjct: 243 TLPLLAVTFITESSLVAAGHDCFPVLFTYDSAA-----GKLSFGGRLDV----------- 286
Query: 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLD 594
P+ + + RF +D + + + H S +
Sbjct: 287 ----------PKQSSQRGLTARERFQN---LDKKASSEGSAAAG-AGLDSLHKNSVSQIS 332
Query: 595 VHP---FNPRIAMSAGYDGRTIVWDI 617
V + G DG +WD+
Sbjct: 333 VLSGGKAKCSQFCTTGMDGGMSIWDV 358
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 71.8 bits (174), Expect = 2e-13
Identities = 33/299 (11%), Positives = 89/299 (29%), Gaps = 32/299 (10%)
Query: 326 HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385
++ A++ + Q+ ++ I++ +++ L + +T
Sbjct: 6 LVEPISCHAWNKDRT---QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT------- 55
Query: 386 NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS 445
+ + VT +D A VW+ + + + +
Sbjct: 56 ----------------GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99
Query: 446 GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 505
N +F+ + + ++ +E + K+ + V + +
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAA 158
Query: 506 RRSHGKVGRW---TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA 562
K + + + P P + P G + V+ + +S + V
Sbjct: 159 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW 218
Query: 563 AIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621
D +C+ +A V +L + + + +A AG+D +++
Sbjct: 219 VSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVA--AGHDCFPVLFTYDSAA 275
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.2 bits (123), Expect = 3e-07
Identities = 26/239 (10%), Positives = 57/239 (23%), Gaps = 43/239 (17%)
Query: 164 FSLLECDRSMKYKQVKPLPAYLRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAI 223
+ + K +K L+ + A
Sbjct: 122 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 181
Query: 224 AKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRG 283
+ + + + + V+ F +G V S D V + + +A+
Sbjct: 182 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS 241
Query: 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGH----------------- 326
+ + + ++LVA+ + F ++ G
Sbjct: 242 ETLPLLAVTFITESSLVAAGHDCF-PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARER 300
Query: 327 ------------------------TGAVTAIAFSP-RPSAIYQLLSSSDDGTCRIWDAR 360
+V+ I+ + Q ++ DG IWD R
Sbjct: 301 FQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 80.7 bits (197), Expect = 2e-16
Identities = 43/353 (12%), Positives = 89/353 (25%), Gaps = 32/353 (9%)
Query: 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR---GHTGAVTAIAFSPRP 339
+ I+D+ + + +L+ S D + V++ L + + F
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68
Query: 340 SAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399
Q+ + G D S + + I + ++S
Sbjct: 69 D--LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126
Query: 400 ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGC 459
I Y +S+ S + + + V + + C
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNN------SQVQWFRLPLC 180
Query: 460 AVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAY 519
+ + K + + S DG + + +
Sbjct: 181 EDDNGTIEESGLKYQIRD-VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239
Query: 520 HLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL 579
++ + VN I +S ++F+ A D I WN
Sbjct: 240 CHRLN--------------LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285
Query: 580 VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW----EGTPIRIYEI 628
+ + + S V+ + + I A D E IY I
Sbjct: 286 IKNFAKFNEDS-VVKIAC-SDNILCLATSDDTFKTNAAIDQTIELNASSIYII 336
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.2 bits (175), Expect = 9e-14
Identities = 42/361 (11%), Positives = 95/361 (26%), Gaps = 34/361 (9%)
Query: 320 ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITG 379
+ + + ++ I P S LL +S DG+ ++
Sbjct: 4 VQIEQAPKDYISDIKIIPSKS---LLLITSWDGSLTVYKF-------------------- 40
Query: 380 KSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIH 439
++ + N + H +LCC + N + + + + S +
Sbjct: 41 --DIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNN 98
Query: 440 ELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAI 499
E ++ + + + D + + ++ V
Sbjct: 99 EANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158
Query: 500 IWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRF 559
+ +W R + + + R L S+D R
Sbjct: 159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV 218
Query: 560 VLAAIMDCRICVWNAVDGSLVH-----SLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIV 614
+ D ++ + T + ++ P + +AG DG
Sbjct: 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISC 277
Query: 615 WDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVL--SDDVGQIYLLNTGQGESQKDAKYDQ 672
W++ I+ + + K + + L SDD + E + Y
Sbjct: 278 WNLQTRKKIKNFA-KFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSIYII 336
Query: 673 F 673
F
Sbjct: 337 F 337
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 70.6 bits (171), Expect = 3e-13
Identities = 36/371 (9%), Positives = 87/371 (23%), Gaps = 35/371 (9%)
Query: 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR---GHEGDIT 289
MQ ++ + +D + S ++ S D + ++ + ++ +
Sbjct: 1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60
Query: 290 DLAVSSN-NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348
N + + + I L L + + S
Sbjct: 61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW 120
Query: 349 SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN 408
L + K N G+ + Q+
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180
Query: 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468
T ++ E S + V F S+
Sbjct: 181 EDDNGTIEESGLKYQIRDVALLPKE-----QEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235
Query: 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPL 528
AF+ + + N + S + S G + W
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT----AGSDGIISCWN------------ 279
Query: 529 PPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSA 588
+ + + +++ + + + A D A+D ++ +++
Sbjct: 280 ----LQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAID----QTIELNAS 331
Query: 589 SSYVLDV--HP 597
S Y++ +P
Sbjct: 332 SIYIIFDYENP 342
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.2 bits (123), Expect = 3e-07
Identities = 13/111 (11%), Positives = 40/111 (36%), Gaps = 5/111 (4%)
Query: 229 MVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288
+ + K V F +F+ T D ++ W+++T + + +
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NED 295
Query: 289 TDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRP 339
+ + ++ ++ ++ A++D + D + + ++ I P
Sbjct: 296 SVVKIACSDNILCLATSDDTFKTNAAID----QTIELNASSIYIIFDYENP 342
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.7 bits (189), Expect = 9e-16
Identities = 38/300 (12%), Positives = 82/300 (27%), Gaps = 19/300 (6%)
Query: 319 PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAIT 378
+ + GH +TA+ +P L+S S DG W + + I
Sbjct: 5 VLKTISGHNKGITALTVNP-------LISGSYDGRIMEWSSSSMHQDHS-------NLIV 50
Query: 379 GKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPI 438
N + S S + V +++ + +
Sbjct: 51 SLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFT 110
Query: 439 HELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSA 498
++ + + V S VA + + + + S+ + ++
Sbjct: 111 GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPL--RAKPSYI 168
Query: 499 IIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558
I + + G V Y L+ R + P ++
Sbjct: 169 SISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 228
Query: 559 FVLAAIMDCRICVWNAVD-GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617
V +D I +++ ++ +L H L + S+G D W++
Sbjct: 229 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLV-SSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.1 bits (146), Expect = 3e-10
Identities = 23/176 (13%), Positives = 45/176 (25%), Gaps = 6/176 (3%)
Query: 185 LRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRD 244
++ + + + + V +
Sbjct: 114 IKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS 173
Query: 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD-ITDLAVSSNNTLVASA 303
Y A D G+ ++ R VK + + LVA+
Sbjct: 174 ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG 233
Query: 304 SNDFVIRVWRLPDGL-PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
S D I ++ + + I L H V + + L+SS D + W+
Sbjct: 234 SLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS----TLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.0 bits (143), Expect = 7e-10
Identities = 23/146 (15%), Positives = 44/146 (30%), Gaps = 2/146 (1%)
Query: 169 CDRSMKYKQVKPLPAYLRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPST 228
+ + L+ P +S E + K S
Sbjct: 141 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR 200
Query: 229 MVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF-CLASCRGHEGD 287
+ I + + V TGS D + I+S++ + + H+
Sbjct: 201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG 260
Query: 288 ITDLAVSSNNTLVASASNDFVIRVWR 313
+ +L + +TLV S+ D I+ W
Sbjct: 261 VNNLLWETPSTLV-SSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.6 bits (129), Expect = 4e-08
Identities = 38/340 (11%), Positives = 81/340 (23%), Gaps = 58/340 (17%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
+K + GH + + +I+GS D + WS + H I L S
Sbjct: 6 LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSK 56
Query: 296 NNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355
+ + +D + ++
Sbjct: 57 AQEYSSISWDDTLKVNGI-------------------TKHEFGSQPKVASANNDGFTAVL 97
Query: 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG 415
D + + S + + GL+ + ++ V
Sbjct: 98 TNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL 157
Query: 416 SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475
+ A+ S ++ ++ + + + S ++ +
Sbjct: 158 KTPLRAKPSY-ISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPA 216
Query: 476 VPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRG 535
D + T S D + I+ +
Sbjct: 217 EKGANEEEIEEDLVATGSLDTNIFIYSVKR----------------------------PM 248
Query: 536 GPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV 575
+ L GVN ++W + V + D I WN V
Sbjct: 249 KIIKALNAHKDGVNNLLWETPSTLVSSG-ADACIKRWNVV 287
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 74.3 bits (180), Expect = 1e-14
Identities = 50/343 (14%), Positives = 87/343 (25%), Gaps = 51/343 (14%)
Query: 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR-GHTGAVTAIAF 335
GH IT L+ S++ + SA + I W + G+ V H +T I
Sbjct: 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
Query: 336 SPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL 395
+ + L + S D ++ A S +
Sbjct: 64 TSK----GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLS-------------------- 99
Query: 396 QSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455
Q L A +A+G + V A + V S V
Sbjct: 100 --SQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQD 157
Query: 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW 515
A K P S +N + IP S ++ ++
Sbjct: 158 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT 217
Query: 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV 575
+ P N + +D + VWN
Sbjct: 218 NSWTFHTAKVACVSWSPD-----------------------NVRLATGSLDNSVIVWNMN 254
Query: 576 DGSLVHSLTGHSASSYVLDVHPFNP-RIAMSAGYDGRTIVWDI 617
S + + + ++ + +SAG D W++
Sbjct: 255 KPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 66.5 bits (160), Expect = 4e-12
Identities = 42/339 (12%), Positives = 79/339 (23%), Gaps = 48/339 (14%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR-GHEGDITDLAVS 294
+ GH A+ G+ + + + + W + T H IT + +
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
Query: 295 SNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354
S L + +D + V G+ S S
Sbjct: 65 SKGDLFTVSWDDHLKVVPAGGSGVDSS--------------------KAVANKLSSQPLG 104
Query: 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVT 414
A Y + + VP + S Q + +
Sbjct: 105 LAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYK 164
Query: 415 GSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEE 474
S + + V + + S + L + + +S + +
Sbjct: 165 LSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHT 224
Query: 475 NVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534
+ + + T S D S I+W H
Sbjct: 225 AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH------------------------- 259
Query: 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 573
P V L+ +++A D I WN
Sbjct: 260 --PIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 60.0 bits (143), Expect = 7e-10
Identities = 42/337 (12%), Positives = 76/337 (22%), Gaps = 51/337 (15%)
Query: 322 VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKS 381
V GH A+TA++ S L S+ +G WD TG S
Sbjct: 7 VRYGHNKAITALSSSADGK---TLFSADAEGHINSWDIS-----------------TGIS 46
Query: 382 NVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHEL 441
N + ++ I + G +F S D +V A S V+ S+ ++L
Sbjct: 47 NRVFPDVHATM-------ITGIKTTSKGDLFTV-SWDDHLKVVPAGGSGVDSSKAVANKL 98
Query: 442 DVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW 501
+ A + + I +
Sbjct: 99 S---------------------SQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISY 137
Query: 502 IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561
+ + P +
Sbjct: 138 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT 197
Query: 562 AAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621
+ + + + D IVW++ + +
Sbjct: 198 DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 257
Query: 622 --PIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYL 656
PI I V+ + T+IV + I
Sbjct: 258 DHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKF 294
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.3 bits (123), Expect = 2e-07
Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 2/108 (1%)
Query: 210 HHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKI 269
+ + I ++ + H V C + + TGS D V +
Sbjct: 191 GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIV 250
Query: 270 WSMETAFC--LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP 315
W+M + H + + N T + SA D I+ W +P
Sbjct: 251 WNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.4 bits (113), Expect = 4e-06
Identities = 19/151 (12%), Positives = 41/151 (27%), Gaps = 5/151 (3%)
Query: 210 HHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKI 269
A + + K S +V + +
Sbjct: 149 QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSV 208
Query: 270 WSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG--LPISVLRGHT 327
+ S H + ++ S +N +A+ S D + VW + PI + H
Sbjct: 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA 268
Query: 328 GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
+ + ++S+ D + W+
Sbjct: 269 MSSVNSVIWLNET---TIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.6 bits (103), Expect = 6e-05
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 577 GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLV 634
GS+ GH+ + L + SA +G WDI G R++ ++
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLF-SADAEGHINSWDISTGISNRVFPDVHATMI 58
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 70.9 bits (172), Expect = 3e-13
Identities = 33/374 (8%), Positives = 71/374 (18%), Gaps = 52/374 (13%)
Query: 291 LAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTG-AVTAIAFSPRPSAIYQLLSSS 349
A+ + + + + + V + +P Y + ++
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAY--VLNN 59
Query: 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG 409
G D + + SS G + A + +G
Sbjct: 60 HYGDIYGIDLDTCKNTFHAN-------------------LSSVPGEVGRSMYSFAISPDG 100
Query: 410 TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSD 469
+ T + G E V
Sbjct: 101 KEVYATVNPTQRLND-----HYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYL------ 149
Query: 470 AFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLP 529
++ D + + W R +
Sbjct: 150 -----------MRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW 198
Query: 530 PQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSAS 589
P L + + D + A + + G H+ +
Sbjct: 199 PHQSPRHEFSML------YTIARFKDDKQDPATADLLYGYLSVDLKTGK-THTQEFADLT 251
Query: 590 SYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSD 649
G R +D+ + I+ + F G + L
Sbjct: 252 ELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDH-TYYCVAFDKKGDKLYLGG 310
Query: 650 DVGQIYLLNTGQGE 663
+ + N E
Sbjct: 311 TFNDLAVFNPDTLE 324
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 70.5 bits (171), Expect = 4e-13
Identities = 30/369 (8%), Positives = 79/369 (21%), Gaps = 47/369 (12%)
Query: 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD-ITDLAVSSNN-TLVASASNDFV 308
++I + + + + + SC + ++ +N T ++
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 309 IRVWRLPDGLPISVLR------GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS 362
I L ++ + A SP +Y ++ +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY---ATVNPTQRLNDHYVVK 120
Query: 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFAR 422
++ G P P Q+ +G+++V G
Sbjct: 121 PPRLEVF-----STADGLEAKPVRTFPM------PRQVYLMRAADDGSLYVAGPDIYKMD 169
Query: 423 VWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNS 482
V + L N + + S + +
Sbjct: 170 VKTG------------KYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 216
Query: 483 WFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPP------------LPP 530
+ T + ++ ++H + + P L
Sbjct: 217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAK 276
Query: 531 QPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASS 590
+ + + + + + V+N V ++
Sbjct: 277 YDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336
Query: 591 YVLDVHPFN 599
F
Sbjct: 337 STTTPQVFI 345
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.7 bits (104), Expect = 7e-05
Identities = 8/98 (8%), Positives = 26/98 (26%), Gaps = 5/98 (5%)
Query: 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVA 301
+ + + I G +R + + ++ + + + +A +
Sbjct: 250 LTELYFTGLRSPKDPNQIYGVLNR-LAKYDLKQRKLIKA-ANLDHTYYCVAFDKKGDKLY 307
Query: 302 SASNDFVIRVWRLPDGLPISVLR---GHTGAVTAIAFS 336
+ V+ + ++ G T F
Sbjct: 308 LGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTPQVFI 345
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.9 bits (169), Expect = 4e-13
Identities = 61/395 (15%), Positives = 115/395 (29%), Gaps = 113/395 (28%)
Query: 231 QKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITD 290
+Q I VYC +D + +++G D +KIW T C GH G +
Sbjct: 3 HSLQRIHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL- 59
Query: 291 LAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD 350
+ + ++ + S+D +RVW + G ++ L H AV + F+
Sbjct: 60 -CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS-----K 113
Query: 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT 410
D + +WD L H+ + +
Sbjct: 114 DRSIAVWDMASPTDITLRR------------------------VLVGHRAAVNVVDFDDK 149
Query: 411 VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470
V+ S D +VW+ + L+GH+ + +Q+
Sbjct: 150 YIVSASGDRTIKVWNTSTCEF---------VRTLNGHKRGIACLQYRDR----------- 189
Query: 471 FKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPP 530
+V+ S D + +W +
Sbjct: 190 -----------------LVVSGSSDNTIRLWDIECGACLRVLEGHEELVR---------- 222
Query: 531 QPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG---------SLVH 581
DN+ +++ D +I VW+ V +
Sbjct: 223 ---------------------CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR 261
Query: 582 SLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616
+L HS V + F+ +S+ +D ++WD
Sbjct: 262 TLVEHSGR--VFRLQ-FDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (141), Expect = 1e-09
Identities = 42/276 (15%), Positives = 82/276 (29%), Gaps = 32/276 (11%)
Query: 397 SHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF 456
S + C Y+ V+G D ++W ++ + +L+GH V +Q+
Sbjct: 15 SKGVYCLQYD--DQKIVSGLRDNTIKIWDK------NTLECKR---ILTGHTGSVLCLQY 63
Query: 457 SGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWT 516
+ + SD+ + + + + W
Sbjct: 64 DERVIITG--SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121
Query: 517 RAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD 576
A + + + V D++++++A D I VWN
Sbjct: 122 MASPTDITLRRVLVGHRA--------------AVNVVDFDDKYIVSASGDRTIKVWNTST 167
Query: 577 GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDG 636
V +L GH + R+ +S D +WDI G +R+ E +
Sbjct: 168 CEFVRTLNGHKRGIAC---LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVR 222
Query: 637 KFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKYDQ 672
D IV G+I + + +
Sbjct: 223 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 258
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (134), Expect = 1e-08
Identities = 50/311 (16%), Positives = 85/311 (27%), Gaps = 99/311 (31%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRS----------------------------------- 254
++ + L GH +V C +D
Sbjct: 42 KNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 101
Query: 255 ---GRFVITGSDDRLVKIWSMETAFCL-ASCRGHEGDITDLAVSSNNTLVASASNDFVIR 310
++T S DR + +W M + + V ++ + SAS D I+
Sbjct: 102 RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIK 161
Query: 311 VWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYL 370
VW + L GH + + + R ++S S D T R+WD +
Sbjct: 162 VWNTSTCEFVRTLNGHKRGIACLQYRDR-----LVVSGSSDNTIRLWDIECGACLRVL-- 214
Query: 371 PKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSS 430
+ H+ L + V+G+ D +VW +
Sbjct: 215 -------------------------EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAAL 249
Query: 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIV 490
+ L L H V +QF IV
Sbjct: 250 DPRAPAGTLCLRTLVEHSGRVFRLQFDE----------------------------FQIV 281
Query: 491 TCSRDGSAIIW 501
+ S D + +IW
Sbjct: 282 SSSHDDTILIW 292
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 63.7 bits (153), Expect = 6e-11
Identities = 46/394 (11%), Positives = 91/394 (23%), Gaps = 52/394 (13%)
Query: 295 SNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354
+ L+A S + + + V + + + + + +
Sbjct: 13 LDGDLIAFVSRG-QAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAF-IHGTREGDFL 68
Query: 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVT 414
I+D R + + G +
Sbjct: 69 GIYDYRTGK----------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK 118
Query: 415 GSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEE 474
+ +R ++ D+ + I L E D +Q + A E
Sbjct: 119 PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTEN 178
Query: 475 NVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534
+ N+ S +V L
Sbjct: 179 SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL------------- 225
Query: 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC----RICVWNAVDGSLVHSLTGHSASS 590
P N + A D + VD + +S
Sbjct: 226 ---------IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI 276
Query: 591 YVLDVHPFNPRIAM--SAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLS 648
+ V A A G + +D+ + L D + S D ++++
Sbjct: 277 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN----NLTDLRLSADRKTVMVR 332
Query: 649 DDVGQIYLLNTGQGESQKDAKYDQFFLGDYRPLI 682
D G+IY + E ++ D RPL+
Sbjct: 333 KDDGKIYTFPLEKPED------ERTVETDKRPLV 360
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 53.7 bits (127), Expect = 1e-07
Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
L + + + ++ + ++T + ++TDL +S++
Sbjct: 272 LESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRK 327
Query: 299 LVASASNDFVIRVWRLPDG 317
V +D I + L
Sbjct: 328 TVMVRKDDGKIYTFPLEKP 346
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 49.9 bits (117), Expect = 2e-06
Identities = 18/267 (6%), Positives = 54/267 (20%), Gaps = 44/267 (16%)
Query: 187 WPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAV 246
+ + ++ + + Y + + + I
Sbjct: 122 IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHD 181
Query: 247 YCAIFDRSGRFVITGSDDRLVKIWSMETAFC-------LASCRGHEGDITDLAVSSNNTL 299
Y FD + + S L G + +
Sbjct: 182 YAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMT 241
Query: 300 VASAS----NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355
+ + + D ++ ++ + + + G
Sbjct: 242 SEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLL 301
Query: 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG 415
+D + T K + + +A+ +
Sbjct: 302 KYDVK-----------------TRKVTE------------VKNNLTDLRLSADRKTVMVR 332
Query: 416 SSDTFARVWSA----CKSSVEDSEQPI 438
D + + +VE ++P+
Sbjct: 333 KDDGKIYTFPLEKPEDERTVETDKRPL 359
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 61.4 bits (147), Expect = 3e-10
Identities = 31/337 (9%), Positives = 78/337 (23%), Gaps = 28/337 (8%)
Query: 256 RFVITGSDDRLVKIWSMETAFCLASCRGHE--GDITDLAVSSN-NTLVASASNDFVIRVW 312
+++ + + + E + V+ A+ + +
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 313 RLPDGLPISVLRGHTG-----AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPR 367
L G + + T ++ A SP + + + +
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAI--------YESPVRLELTHFEVQ 113
Query: 368 IYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSAC 427
DA T QI A+ +G+ D
Sbjct: 114 PTRVALYDAETLSRRKAFE---------APRQITMLAWARDGSKLYGLGRDLHVMDP--- 161
Query: 428 KSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHD 487
++ ++PI + + + DV V + + +++ P ++
Sbjct: 162 EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221
Query: 488 NIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG 547
+ A+ + + L + +P P
Sbjct: 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHS 281
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT 584
+ S D V + ++A +
Sbjct: 282 YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 59.0 bits (141), Expect = 2e-09
Identities = 31/352 (8%), Positives = 76/352 (21%), Gaps = 27/352 (7%)
Query: 299 LVASASNDFVIRVWRLPDGLPISVLR--GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356
+ + + + V V+ +P Y + + +
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAY--ATVNKSESLVK 60
Query: 357 WDARYSQYSPRIYLPKPPDAITGKSNV---PSNNGPSSSNGLQSHQILCCAYNANGTVFV 413
D + RI L P + + P + ++
Sbjct: 61 IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120
Query: 414 TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473
+ + + + A + + G + V +G V + S +
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDP-EAGTLVEDKPIQSWEAET 179
Query: 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPP 533
P W H++ +
Sbjct: 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM-------------DL 226
Query: 534 RGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVL 593
G V +++ A + ++ + + + S Y +
Sbjct: 227 ETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSV 285
Query: 594 DVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEI---GRFKLVDGK-FSPD 641
+V + G G +D ++ L + F+ D
Sbjct: 286 NVSTDGSTVW-LGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTRD 336
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.2 bits (105), Expect = 4e-05
Identities = 6/109 (5%), Positives = 28/109 (25%), Gaps = 7/109 (6%)
Query: 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLA 292
++++R + + + +++ + +E + +
Sbjct: 230 EMAMREVRIMDVFYFSTAVNPAKTRA--FGAYNVLESFDLEKNASIKRV-PLPHSYYSVN 286
Query: 293 VSSNNTLVASASNDFVIRVWRLPDGLPISVLR----GHTGAVTAIAFSP 337
VS++ + V + + + + F+
Sbjct: 287 VSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTR 335
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 61.3 bits (147), Expect = 3e-10
Identities = 36/347 (10%), Positives = 75/347 (21%), Gaps = 33/347 (9%)
Query: 298 TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIY-------QLLSSSD 350
A + V G I ++ G + + S I ++
Sbjct: 19 NDPAHFAAVTQQFVIDGEAGRVIGMI--DGGFLPNPVVADDGSFIAHASTVFSRIARGER 76
Query: 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT 410
++D + I LP + P G
Sbjct: 77 TDYVEVFDPVTLLPTADIELP---------------DAPRFLVGTYPWMTSLTPDGKTLL 121
Query: 411 VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVASRSAMS 468
+ + V K+ + P + G
Sbjct: 122 FYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTE 178
Query: 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPL 528
+ + F N S+ ++W + + H A L
Sbjct: 179 GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT 238
Query: 529 PPQPPRG---GPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG 585
+ G G Q++ + + + V +A G +
Sbjct: 239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM 298
Query: 586 HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIR-IYEIGRF 631
+ P + + D + D G +R + ++G
Sbjct: 299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG 345
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.8 bits (104), Expect = 7e-05
Identities = 12/142 (8%), Positives = 31/142 (21%), Gaps = 24/142 (16%)
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET--AFCLASCRGHEGDITDLA------ 292
+ + + ++ + + + + A L +
Sbjct: 192 EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW 251
Query: 293 --------------VSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPR 338
+ + + V G ++ + +I S
Sbjct: 252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQD 310
Query: 339 PSAIYQLLSSSDDGTCRIWDAR 360
+ S+ D T I DA
Sbjct: 311 EKPLL-YALSTGDKTLYIHDAE 331
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 61.7 bits (149), Expect = 4e-10
Identities = 49/418 (11%), Positives = 99/418 (23%), Gaps = 50/418 (11%)
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV 300
R +D F +T D + + T + +S++ +
Sbjct: 18 EDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYL 76
Query: 301 ASASNDFVIRVWRLPDG-----LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355
D + + L I + T+ +
Sbjct: 77 FVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI--AGAYWPPQYV 134
Query: 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG 415
I D + + + ++ G + +
Sbjct: 135 IMDGETLEP---KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 191
Query: 416 SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475
+D + K++ +E+ +H+ + S + + + +
Sbjct: 192 YTD-----LNNLKTTEISAERFLHDGGLDG-----------SHRYFITAANARNKLVVID 235
Query: 476 VPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRG 535
+ K T A P + L P P
Sbjct: 236 TKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPD--NA 293
Query: 536 GPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDV 595
P G ++ + + N + VD +L S S V D+
Sbjct: 294 WKILDSFPALGGGSLFIKTHPN------------SQYLYVDATLNPE-AEISGSVAVFDI 340
Query: 596 HPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQ 653
+ G D I I E ++V G+F+ DGT + S G+
Sbjct: 341 -----KAMTGDGSDPEFKTLPI--AEWAGITEGQP-RVVQGEFNKDGTEVWFSVWNGK 390
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 42.9 bits (100), Expect = 3e-04
Identities = 14/129 (10%), Positives = 40/129 (31%), Gaps = 7/129 (5%)
Query: 542 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL-----VHSLTGHSASSYVLDVH 596
L T V++ S R++ D ++ + + + + +
Sbjct: 58 LDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEG 117
Query: 597 PFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDG--TSIVLSDDVGQI 654
+ A + + ++ D P +I + ++ P+ +I+ S +
Sbjct: 118 WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF 177
Query: 655 YLLNTGQGE 663
+ G+
Sbjct: 178 IVNVKETGK 186
|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 118 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: P300/CAF histone acetyltransferase bromodomain species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.9 bits (129), Expect = 5e-09
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 2/111 (1%)
Query: 1607 EIDSESRD--KLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLR 1664
+ E RD +L S+ + Q V Q + + + Y P+ + + R
Sbjct: 3 HMSKEPRDPDQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSER 62
Query: 1665 LVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNKL 1715
L N YY S + D+ + +N + Y + L +F + +
Sbjct: 63 LKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIKEA 113
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 56.5 bits (135), Expect = 2e-08
Identities = 49/416 (11%), Positives = 105/416 (25%), Gaps = 55/416 (13%)
Query: 252 DRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRV 311
D F +T D + + ++ + + +S++ + D I +
Sbjct: 29 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDM 87
Query: 312 WRLPDGLPISVLR-----GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSP 366
L P V ++ + I D P
Sbjct: 88 IDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTI--AGAYWPPQFAIMDG--ETLEP 143
Query: 367 RIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSA 426
+ + + + ++ H G V + D
Sbjct: 144 KQIVSTRGMTVDTQ-TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV-- 200
Query: 427 CKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW--- 483
+ + + + S H + S S +V K +
Sbjct: 201 ---TSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA 257
Query: 484 -FCHDN----IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPR 538
F H T +I I ++H W + L+ GG
Sbjct: 258 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNH-PQYAWKKVAELQGQ----------GGGS 306
Query: 539 QRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLD---- 594
+ P+ ++ V D F A + + V++ + + + + + + +
Sbjct: 307 LFIKTHPKSSHLYV---DTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKR 363
Query: 595 -VHP-FNP---RIAMS----AGYDGRTIVWDIWEGTPIRIYEIGRFKLV--DGKFS 639
V P +N + S +V D + +L+ GKF+
Sbjct: 364 VVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA--VVKDPRLITPTGKFN 417
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 54.6 bits (130), Expect = 6e-08
Identities = 36/381 (9%), Positives = 85/381 (22%), Gaps = 50/381 (13%)
Query: 291 LAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD 350
+ N + + I + + V+ AV S +
Sbjct: 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLL---VIGR 81
Query: 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT 410
D + D + T + + S
Sbjct: 82 DARIDMIDLWAKEP-------------TKVAEIKIGIEARSV-------ESSKFKGYEDR 121
Query: 411 VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS---GHENDVNYVQFSGCAVASRSAM 467
+ G+ ++ + V + E V + S +
Sbjct: 122 YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 181
Query: 468 SDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPP 527
+ K V +K+ + + + W R + +
Sbjct: 182 KETGKVLLVN-YKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR 240
Query: 528 LPPQPPRGGPRQRLLPTP-----RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHS 582
L G G L + + +++ V
Sbjct: 241 LSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI--SLIGTDPKNHPQYAWKKVAE 298
Query: 583 LTGHSASSYVLDVHPFNPRIAMSA-----GYDGRTI-VWDIWEGTPI-RIYEIGRFK--- 632
L G S + HP + + + +++ V+D+ ++ I +
Sbjct: 299 LQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLG 358
Query: 633 -----LVDGKFSPDGTSIVLS 648
+V +++ G + S
Sbjct: 359 EGAKRVVQPEYNKRGDEVWFS 379
|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.2 bits (122), Expect = 2e-08
Identities = 16/101 (15%), Positives = 38/101 (37%)
Query: 1614 DKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSL 1673
D+L ++ L + + + ++ DY P+ + + RL + YY +
Sbjct: 1 DQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTR 60
Query: 1674 EAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNK 1714
+ D+ +++N Y ++ L +F L +
Sbjct: 61 KLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLKE 101
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 52.6 bits (124), Expect = 2e-07
Identities = 27/283 (9%), Positives = 71/283 (25%), Gaps = 8/283 (2%)
Query: 302 SASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY 361
+ S I V + + + SP + +Y ++++ I D
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVY--VANAHSNDVSIIDTA- 62
Query: 362 SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFA 421
+ + P + V + + S + +N + +
Sbjct: 63 ---TNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPL 119
Query: 422 RVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481
+ + + + S A++ + V F +
Sbjct: 120 GLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDS 179
Query: 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL 541
+ VT S + + S + G ++ +
Sbjct: 180 MSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITAR 239
Query: 542 LPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSLVHSL 583
+P I + D + V A+ + V + ++ ++
Sbjct: 240 IPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 45.2 bits (105), Expect = 4e-05
Identities = 25/321 (7%), Positives = 77/321 (23%), Gaps = 50/321 (15%)
Query: 341 AIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400
+ + +++S+ + D ++ + I + P
Sbjct: 1 STFAYIANSESDNISVIDVTSNKVTATIPVGSNPMGA----------------------- 37
Query: 401 LCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGC 459
+ +GT V+V + + ++V + ++ + +
Sbjct: 38 ---VISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMA 94
Query: 460 AVASRSAMSDAFKEENVPKFKNS-----------------WFCHDNIVTCSRDGSAIIWI 502
+ + + K S V + + I +
Sbjct: 95 SSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154
Query: 503 -----PRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557
P+ + A + + ++ P G+ +
Sbjct: 155 SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKA 214
Query: 558 RFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617
+ + + + + + + V P ++ ++ + V D
Sbjct: 215 YVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGI-AVTPDGKKVYVALSFCNTVSVIDT 273
Query: 618 WEGTPIRIYEIGRFKLVDGKF 638
T +G+ G+F
Sbjct: 274 ATNTITATMAVGKNPYASGQF 294
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.5 bits (109), Expect = 2e-05
Identities = 20/171 (11%), Positives = 45/171 (26%), Gaps = 21/171 (12%)
Query: 227 STMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEG 286
+ + + + A + G V + L A A+ G+E
Sbjct: 195 APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNES 254
Query: 287 DITDLAVSSNNTLVASASND----FV---------------IRVWRLPDGLPISVLRGHT 327
S + + + + G + +
Sbjct: 255 GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-SNG 313
Query: 328 GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAIT 378
AI + ++ +S+ I+DA Q + L K P++++
Sbjct: 314 HDSDAIIAAQDGASDN-YANSAGTEVLDIYDAASDQDQSSVELDKGPESLS 363
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.5 bits (109), Expect = 2e-05
Identities = 26/349 (7%), Positives = 59/349 (16%), Gaps = 51/349 (14%)
Query: 325 GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW--DARYSQYSPRIYLPKPP-------- 374
G+ + L + GT W A
Sbjct: 17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSG 76
Query: 375 -------------------------DAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG 409
D +T + + + ++
Sbjct: 77 SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136
Query: 410 TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG----HENDVNYVQFSGCAVASRS 465
+ + A S S + S A + S
Sbjct: 137 CLLFFLFGSSAAAGLSV------PGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAAS 190
Query: 466 AMSDAFKEENVPKFKNSWFCHDNI---VTCSRDGSAIIWIPRSRR-SHGKVGRWTRAYHL 521
++ A + + G + + S T +
Sbjct: 191 DLAAA-PAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAI 249
Query: 522 KVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVH 581
R Q + + I+ A G
Sbjct: 250 DGNESGRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTSG 308
Query: 582 SLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGR 630
++ S ++ ++ ++D E+ +
Sbjct: 309 PISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357
|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.8 bits (103), Expect = 2e-05
Identities = 12/69 (17%), Positives = 30/69 (43%)
Query: 1647 DYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRD 1706
DY P+ + +R + Y S E ++ + +++ N+ +Y +L+ + + D
Sbjct: 58 DYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLD 117
Query: 1707 WFNRTLNKL 1715
+ L +
Sbjct: 118 LCDEKLKEK 126
|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (100), Expect = 4e-05
Identities = 17/69 (24%), Positives = 34/69 (49%)
Query: 1647 DYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRD 1706
DY P+ E IR + + Y+S E+ DD+N++L+N+ Y + + + + +
Sbjct: 42 DYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVN 101
Query: 1707 WFNRTLNKL 1715
+TL +
Sbjct: 102 VCYQTLTEY 110
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 44.8 bits (104), Expect = 5e-05
Identities = 32/332 (9%), Positives = 77/332 (23%), Gaps = 34/332 (10%)
Query: 259 ITGSDDRLVKIWSM--ETAFCLASCRGHEGDITDLAVSSN-NTLVASASNDFVIRVWRLP 315
I + + + +W++ E A L G + + VS + L +F + +R+
Sbjct: 8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67
Query: 316 DGLPISVLRGHT---GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPK 372
+ G++T I+ + + S + G + +
Sbjct: 68 PDDGALTFAAESALPGSLTHISTD--HQGQFVFVGSYNAGNVSVTRLEDGLPVGVV---- 121
Query: 373 PPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVE 432
H N +
Sbjct: 122 ----------------DVVEGLDGCHSANISPDN---RTLWVPALKQDRICLFTVSDDGH 162
Query: 433 DSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTC 492
Q E+ + G + + ++ + + + C +
Sbjct: 163 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM 222
Query: 493 SRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIV 552
+ S W + + + + ++ PT
Sbjct: 223 PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFN 282
Query: 553 WSLDNRFVLAAIMDC-RICVW--NAVDGSLVH 581
++++AA I V+ G L
Sbjct: 283 VDHSGKYLIAAGQKSHHISVYEIVGEQGLLHE 314
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 43.3 bits (100), Expect = 2e-04
Identities = 34/331 (10%), Positives = 77/331 (23%), Gaps = 33/331 (9%)
Query: 294 SSNNTLVASASNDFVIRVWRLPDGLPISVLR--GHTGAVTAIAFSPRPSAIYQLLSSSDD 351
S T+ ++ I VW L +++ + G V + SP +Y + +
Sbjct: 1 SLKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLY--VGVRPE 58
Query: 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTV 411
+ + + P S + + + +
Sbjct: 59 FRVLAYRIAPDDGALTFA--------------AESALPGSLTHISTDHQGQFVFVGSYNA 104
Query: 412 FVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471
+ + VE + H +++ + A + F
Sbjct: 105 GNVSVTRLEDGLPVGVVDVVEGLDGC---------HSANISPDNRTLWVPALKQDRICLF 155
Query: 472 KEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531
+ V + + + P
Sbjct: 156 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC 215
Query: 532 PPRGGPRQRLLPTPRGVNMIVWSLDNRFVL-AAIMDCRICVWNAVDGSLVHSLTGH-SAS 589
R I + D R + I V++ + V S G
Sbjct: 216 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE 275
Query: 590 SYVLDVHPFNP--RIAMSAGYDGRTI-VWDI 617
+ + + + ++AG I V++I
Sbjct: 276 TQPRGFN-VDHSGKYLIAAGQKSHHISVYEI 305
|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: CREB-binding protein, CBP species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (98), Expect = 7e-05
Identities = 15/69 (21%), Positives = 31/69 (44%)
Query: 1647 DYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRD 1706
DY + P+ I+ +L Y+ DD+ +M +NA Y K + + +L +
Sbjct: 41 DYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAE 100
Query: 1707 WFNRTLNKL 1715
F + ++ +
Sbjct: 101 VFEQEIDPV 109
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.0 bits (89), Expect = 0.003
Identities = 29/234 (12%), Positives = 59/234 (25%), Gaps = 13/234 (5%)
Query: 444 LSGHENDVNYVQFS--GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW 501
+ + +N +F G +A R + ++ + +T S
Sbjct: 36 IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNG-ENGEIKRITYFSGKSTGRR 94
Query: 502 IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561
+ G + P + +P G + D R V+
Sbjct: 95 MFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVI 154
Query: 562 AAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621
G+ ++ ++ V + + DI
Sbjct: 155 GRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFG 214
Query: 622 PIRIYEI---GRFKLVDGK------FSPDGTSIVLSDDVGQIYLLNTGQGESQK 666
I ++ K + DG I+ S G IY+ N + +K
Sbjct: 215 QIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKG-GSIYIFNPDTEKIEK 267
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1715 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1t77a1 | 304 | Lipopolysaccharide-responsive and beige-like ancho | 99.91 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.91 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.91 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.87 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.86 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.85 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.85 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.85 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.82 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.76 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.75 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.73 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.7 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.7 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.68 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.67 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.52 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.52 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.45 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.36 | |
| d3d7ca1 | 102 | GCN5 {Human (Homo sapiens) [TaxId: 9606]} | 99.29 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.27 | |
| d1wuma1 | 118 | P300/CAF histone acetyltransferase bromodomain {Hu | 99.25 | |
| d3dwya1 | 114 | CREB-binding protein, CBP {Human (Homo sapiens) [T | 99.21 | |
| d1eqfa2 | 128 | TAFII250 double bromodomain module {Human (Homo sa | 99.21 | |
| d1e6ia_ | 111 | GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.13 | |
| d1eqfa1 | 139 | TAFII250 double bromodomain module {Human (Homo sa | 99.1 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.94 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.71 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.67 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.67 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.63 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.63 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.59 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.54 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.52 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.51 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.51 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.42 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.42 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.36 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.35 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.29 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.23 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.84 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.77 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.64 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.54 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.31 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.25 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.23 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.16 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.15 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.97 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.9 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.84 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.83 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.07 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 95.98 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.91 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.89 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 95.86 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.51 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.42 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.29 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.24 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 95.1 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 94.97 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 94.85 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 89.97 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 88.79 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 88.32 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 83.26 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 83.23 | |
| d1mhna_ | 59 | Survival motor neuron protein 1, smn {Human (Homo | 81.73 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.5e-37 Score=352.20 Aligned_cols=309 Identities=20% Similarity=0.320 Sum_probs=270.8
Q ss_pred eEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEEC
Q 048801 235 NIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL 314 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl 314 (1715)
...+|+||.+.|++|+|+|++++||||+.||+|+|||+.+++++.++.+|...|.+++|++++.++++++.++.+.+|+.
T Consensus 9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (317)
T d1vyhc1 9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 88 (317)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 315 PDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 315 ~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
........+.+|...+.++.|++++. .+++++.|+.+++||+.++.....+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~------------------------- 140 (317)
T d1vyhc1 89 QGFECIRTMHGHDHNVSSVSIMPNGD---HIVSASRDKTIKMWEVQTGYCVKTFT------------------------- 140 (317)
T ss_dssp TSSCEEECCCCCSSCEEEEEECSSSS---EEEEEETTSEEEEEETTTCCEEEEEE-------------------------
T ss_pred cccccccccccccccceeeeccCCCc---eEEeeccCcceeEeecccceeeeEEc-------------------------
Confidence 99988888999999999999999988 89999999999999998877554432
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccc
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEE 474 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~ 474 (1715)
.|...+.+++|++++.+|++|+.|+.|++|++.+. ..+..+.+|...+.++.|+++...
T Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~------------ 199 (317)
T d1vyhc1 141 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK---------ECKAELREHRHVVECISWAPESSY------------ 199 (317)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECCSCGG------------
T ss_pred cCCCcceeeecccCCCEEEEEeCCCeEEEEeeccc---------eeeEEEecCCCCceEEEEeecccc------------
Confidence 24556899999999999999999999999999874 346677889999999999986510
Q ss_pred ccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC
Q 048801 475 NVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS 554 (1715)
Q Consensus 475 ~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS 554 (1715)
+... .........+.
T Consensus 200 --------------~~~~---------------------------------------------------~~~~~~~~~~~ 214 (317)
T d1vyhc1 200 --------------SSIS---------------------------------------------------EATGSETKKSG 214 (317)
T ss_dssp --------------GGGG---------------------------------------------------GCCSCC-----
T ss_pred --------------ceee---------------------------------------------------ccccceeeeec
Confidence 0000 00011223344
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEE
Q 048801 555 LDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLV 634 (1715)
Q Consensus 555 PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~ 634 (1715)
..+.++++|+.|+.|++|++.+++++..+.+|...|.+++|+| ++.+|++|+.||.|+|||+.+++++.++.+|...|+
T Consensus 215 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~ 293 (317)
T d1vyhc1 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT 293 (317)
T ss_dssp --CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEE
T ss_pred cCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEE
Confidence 5678999999999999999999999999999999999999999 778899999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 635 DGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 635 svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
+++|+|+|++||+|+.||.|+|||
T Consensus 294 ~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 294 SLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999999999999999999999996
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-34 Score=339.26 Aligned_cols=288 Identities=16% Similarity=0.278 Sum_probs=247.1
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----EEEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF-----CLASCRGHEGDITDLAVSSNNTLVASASND 306 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk-----~l~tL~gHs~~VtsLafSpDg~lLASGS~D 306 (1715)
..+.+.+| +|...|+||+|+|+|++||||+ ||.|+|||+.++. ......+|.+.|.+++|+|++++|++|+.|
T Consensus 41 ~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d 118 (337)
T d1gxra_ 41 HARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA 118 (337)
T ss_dssp EEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred CceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc
Confidence 44666777 8999999999999999999997 8999999997653 233456899999999999999999999999
Q ss_pred CeeEEEECCCC--CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 307 FVIRVWRLPDG--LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 307 GtIrVWDl~tg--~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
|+|+|||+... .....+.+|...|.+++|+|++. ++++++.|+.|++|++.+++.....
T Consensus 119 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~s~~~d~~i~~~~~~~~~~~~~~---------------- 179 (337)
T d1gxra_ 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK---VCFSCCSDGNIAVWDLHNQTLVRQF---------------- 179 (337)
T ss_dssp SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS---EEEEEETTSCEEEEETTTTEEEEEE----------------
T ss_pred cccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccc----------------
Confidence 99999998754 45667788999999999999987 8999999999999999887644332
Q ss_pred CCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccc
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASR 464 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~ 464 (1715)
..|...|.+++|++++..+++|+.||.|++||+.+++ .+.. ..|...|.+++|+|++
T Consensus 180 ---------~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~---------~~~~-~~~~~~i~~l~~~~~~---- 236 (337)
T d1gxra_ 180 ---------QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR---------QLQQ-HDFTSQIFSLGYCPTG---- 236 (337)
T ss_dssp ---------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------EEEE-EECSSCEEEEEECTTS----
T ss_pred ---------cccccccccccccccccccccccccccccccccccce---------eecc-cccccceEEEEEcccc----
Confidence 2245679999999999999999999999999998753 2333 3578899999999986
Q ss_pred ccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCC
Q 048801 465 SAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPT 544 (1715)
Q Consensus 465 ~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h 544 (1715)
..|++++.||.|++||+.++. ......|
T Consensus 237 ----------------------~~l~~~~~d~~i~i~d~~~~~------------------------------~~~~~~~ 264 (337)
T d1gxra_ 237 ----------------------EWLAVGMESSNVEVLHVNKPD------------------------------KYQLHLH 264 (337)
T ss_dssp ----------------------SEEEEEETTSCEEEEETTSSC------------------------------EEEECCC
T ss_pred ----------------------cccceeccccccccccccccc------------------------------ccccccc
Confidence 789999999999999998633 1234457
Q ss_pred CCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 545 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 545 ~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
...|++++|+|+|++|++|+.||.|++||+.+++.+..+. |...|.+++|+| ++++|++|+.||+|+|||+
T Consensus 265 ~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~-d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISV-DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECT-TSCEEEEEETTSCEEEEEE
T ss_pred ccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEE
Confidence 7889999999999999999999999999999999988765 788999999999 7788999999999999996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-34 Score=345.16 Aligned_cols=305 Identities=22% Similarity=0.398 Sum_probs=245.2
Q ss_pred EEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec------------------CCCCCeEEEEECCCCCE
Q 048801 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR------------------GHEGDITDLAVSSNNTL 299 (1715)
Q Consensus 238 ~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~------------------gHs~~VtsLafSpDg~l 299 (1715)
...+|.+.|+||+|+|||++||+|+ |+.|+|||+.+++.+..+. +|...|++++|+|++++
T Consensus 57 ~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~ 135 (388)
T d1erja_ 57 KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 135 (388)
T ss_dssp EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred eeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence 3447999999999999999999987 8999999999998887664 45677999999999999
Q ss_pred EEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccC
Q 048801 300 VASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITG 379 (1715)
Q Consensus 300 LASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g 379 (1715)
|++|+.||.|++|+...++.+..+.+|...|.+++|++++. .+++++.++.|++||+.+.........
T Consensus 136 l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~~~~~~~~~~i~~~d~~~~~~~~~~~~--------- 203 (388)
T d1erja_ 136 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD---KLVSGSGDRTVRIWDLRTGQCSLTLSI--------- 203 (388)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---EEEEEETTSEEEEEETTTTEEEEEEEC---------
T ss_pred ceecccccccccccccccccccccccccccccccccccccc---cccccccceeeeeeecccccccccccc---------
Confidence 99999999999999999999999999999999999999987 899999999999999987654333211
Q ss_pred ccCCCCCCCCCCCCCCCCcceeEEEEc-cCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEcc
Q 048801 380 KSNVPSNNGPSSSNGLQSHQILCCAYN-ANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSG 458 (1715)
Q Consensus 380 ~~~~~~~~~~~~~~~~h~~~VtslafS-pdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafsp 458 (1715)
.....++.++ +++.+|++|+.||.|++|++.++....... .......+|...|.+++|+|
T Consensus 204 -----------------~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~~~~h~~~v~~l~~s~ 264 (388)
T d1erja_ 204 -----------------EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD--SENESGTGHKDSVYSVVFTR 264 (388)
T ss_dssp -----------------SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------CCCSSCEEEEEECT
T ss_pred -----------------ccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeec--cccccccCCCCCEEEEEECC
Confidence 2224455555 588999999999999999998764311111 11234467899999999999
Q ss_pred CcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCc
Q 048801 459 CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPR 538 (1715)
Q Consensus 459 dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 538 (1715)
++ ..|++++.||.|++||+.+........ ........
T Consensus 265 ~~--------------------------~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------~~~~~~~~ 301 (388)
T d1erja_ 265 DG--------------------------QSVVSGSLDRSVKLWNLQNANNKSDSK-----------------TPNSGTCE 301 (388)
T ss_dssp TS--------------------------SEEEEEETTSEEEEEEC--------------------------------CEE
T ss_pred CC--------------------------CEEEEEECCCcEEEEeccCCccccccc-----------------ccccccee
Confidence 86 799999999999999998654221110 01112234
Q ss_pred ccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEE------ccCCCcEEEEEeCCCcE
Q 048801 539 QRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDV------HPFNPRIAMSAGYDGRT 612 (1715)
Q Consensus 539 ~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLaf------SP~dg~lLaSgs~DGtI 612 (1715)
.....|...|.+++|+|+|++|++|+.||.|+|||+.+++++.++.+|.+.|+++++ +| ++.+|+||+.||+|
T Consensus 302 ~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~sp-d~~~l~s~s~Dg~I 380 (388)
T d1erja_ 302 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP-EYNVFATGSGDCKA 380 (388)
T ss_dssp EEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCT-TCEEEEEEETTSEE
T ss_pred eecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCC-CCCEEEEEeCCCEE
Confidence 455678889999999999999999999999999999999999999999999999986 45 67899999999999
Q ss_pred EEEECC
Q 048801 613 IVWDIW 618 (1715)
Q Consensus 613 ~VWDl~ 618 (1715)
+||+++
T Consensus 381 ~iW~~~ 386 (388)
T d1erja_ 381 RIWKYK 386 (388)
T ss_dssp EEEEEE
T ss_pred EEEeee
Confidence 999973
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.2e-33 Score=327.22 Aligned_cols=292 Identities=22% Similarity=0.368 Sum_probs=251.7
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
++..++|+||.+.|+||+|+|++.+||||+.||+|+|||+.+++.+..+.+|...|++++|+|++.+|++|+.|+.|++|
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC----CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCC
Q 048801 313 RLPDG----LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 313 Dl~tg----~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
+.... .....+.+|...+......... .++....+.....|...........
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 180 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN----QIVTSSGDTTCALWDIETGQQTTTF-------------------- 180 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEEEEEEETT----EEEEEETTTEEEEEETTTTEEEEEE--------------------
T ss_pred cccccccccccceeccccccccccccccccc----ccccccccccccccccccccccccc--------------------
Confidence 97654 3456677888887777776654 6788888999999887654432221
Q ss_pred CCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccc
Q 048801 389 PSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~ 468 (1715)
..+...+.++.+.+.+.++++|+.|+.|++||+.++ ..+..+.+|...|++++|+|++
T Consensus 181 -----~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~---------~~~~~~~~h~~~i~~v~~~p~~-------- 238 (340)
T d1tbga_ 181 -----TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---------MCRQTFTGHESDINAICFFPNG-------- 238 (340)
T ss_dssp -----ECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT---------EEEEEECCCSSCEEEEEECTTS--------
T ss_pred -----cccceeEeeeccccccceeEEeecCceEEEEECCCC---------cEEEEEeCCCCCeEEEEECCCC--------
Confidence 123455889999999999999999999999999864 4577888999999999999986
Q ss_pred ccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCe
Q 048801 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548 (1715)
Q Consensus 469 ~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V 548 (1715)
..|++|+.||.|++|++........ .....+...|
T Consensus 239 ------------------~~l~s~s~d~~i~~~~~~~~~~~~~---------------------------~~~~~~~~~i 273 (340)
T d1tbga_ 239 ------------------NAFATGSDDATCRLFDLRADQELMT---------------------------YSHDNIICGI 273 (340)
T ss_dssp ------------------SEEEEEETTSCEEEEETTTTEEEEE---------------------------ECCTTCCSCE
T ss_pred ------------------CEEEEEeCCCeEEEEeecccccccc---------------------------cccccccCce
Confidence 7999999999999999986432111 1123455679
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 549 NMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 549 tslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
.+++|+|++++|++|+.||.|+|||+.+++++.++.+|.+.|++|+|+| ++.+|+||+.||+|+|||
T Consensus 274 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEccCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999 778889999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-33 Score=323.78 Aligned_cols=325 Identities=24% Similarity=0.398 Sum_probs=267.0
Q ss_pred ccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeE
Q 048801 231 QKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIR 310 (1715)
Q Consensus 231 ~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIr 310 (1715)
...++.++|+||.+.|.+ +++++|++|||||.||+|+|||+.++++++++.+|.+.|.+++|+++ +|++|+.|++++
T Consensus 4 ~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~ 80 (342)
T d2ovrb2 4 GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLK 80 (342)
T ss_dssp SCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEE
T ss_pred CCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccc
Confidence 346678899999999865 36668999999999999999999999999999999999999999875 999999999999
Q ss_pred EEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCC
Q 048801 311 VWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPS 390 (1715)
Q Consensus 311 VWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~ 390 (1715)
+|+............+...+....+.+. .++.+..|+.+.+|+..+++....+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~d~~i~~~~~~~~~~~~~~~~~------------------- 136 (342)
T d2ovrb2 81 VWNAETGECIHTLYGHTSTVRCMHLHEK-----RVVSGSRDATLRVWDIETGQCLHVLMGH------------------- 136 (342)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEETT-----EEEEEETTSEEEEEESSSCCEEEEEECC-------------------
T ss_pred ccccccccceecccccceeEeeeecccc-----cccccccceeEEEeecccccceeeeecc-------------------
Confidence 9999888877777777777777766654 6788999999999999887654443211
Q ss_pred CCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccc
Q 048801 391 SSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470 (1715)
Q Consensus 391 ~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~ 470 (1715)
......+......+++++.|+.|++|+.... ..+..+.+|...+..+.+.+
T Consensus 137 --------~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~---------~~~~~~~~~~~~~~~~~~~~------------ 187 (342)
T d2ovrb2 137 --------VAAVRCVQYDGRRVVSGAYDFMVKVWDPETE---------TCLHTLQGHTNRVYSLQFDG------------ 187 (342)
T ss_dssp --------SSCEEEEEECSSCEEEEETTSCEEEEEGGGT---------EEEEEECCCSSCEEEEEECS------------
T ss_pred --------cccceeeccccceeeeecCCCeEEEeecccc---------eeeEEEcCcccccccccCCC------------
Confidence 1123344556778999999999999999763 45677788887777766643
Q ss_pred ccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeE
Q 048801 471 FKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNM 550 (1715)
Q Consensus 471 ~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vts 550 (1715)
..|++++.||.|++||+..++ .+.....|...+.+
T Consensus 188 ----------------~~l~s~~~dg~i~~~d~~~~~-----------------------------~~~~~~~~~~~v~~ 222 (342)
T d2ovrb2 188 ----------------IHVVSGSLDTSIRVWDVETGN-----------------------------CIHTLTGHQSLTSG 222 (342)
T ss_dssp ----------------SEEEEEETTSCEEEEETTTCC-----------------------------EEEEECCCCSCEEE
T ss_pred ----------------CEEEEEeCCCeEEEeecccce-----------------------------eeeEecccccceeE
Confidence 689999999999999998643 23345567777887
Q ss_pred EEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec---CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE
Q 048801 551 IVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG---HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 551 lafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g---H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~ 627 (1715)
++++ +++|++|+.|+.|++||+...+....+.+ |...+.++.++ +.++++|+.||+|+|||+.+|++++.+.
T Consensus 223 ~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~tg~~i~~~~ 297 (342)
T d2ovrb2 223 MELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLV 297 (342)
T ss_dssp EEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC---CCeeEEEcCCCEEEEEECCCCCEEEEEe
Confidence 7775 56999999999999999999998888875 45667777774 4689999999999999999999999886
Q ss_pred -----cccceEEEEEEcCCCCEEEEEeCCCe----EEEEECCC
Q 048801 628 -----IGRFKLVDGKFSPDGTSIVLSDDVGQ----IYLLNTGQ 661 (1715)
Q Consensus 628 -----~h~~~V~svafSPDG~~LAsgs~DG~----I~IWdl~t 661 (1715)
+|...|++++|+|++.+||+|+.||+ |++||+..
T Consensus 298 ~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 298 TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp ECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred cccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 35667999999999999999999985 99999853
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.9e-34 Score=330.86 Aligned_cols=344 Identities=21% Similarity=0.321 Sum_probs=256.9
Q ss_pred eEEEEcCCCCCe-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 235 NIKKLRGHRDAV-YCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 235 ~l~~L~GH~~~V-t~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
+..+|+||.+.| +|++| +|++||||+.||+|+|||+.+++++.++.+|.+.|++|+|+++ .+|++|+.||+|++|+
T Consensus 4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80 (355)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence 356799999886 66665 5889999999999999999999999999999999999999986 5899999999999999
Q ss_pred CCCCCceEEEeCCCC--CeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 314 LPDGLPISVLRGHTG--AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 314 l~tg~~l~~L~gH~~--~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
+...........+.. .+..+.+.+++. ++++++.|+.|++||+.+................. .........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 153 (355)
T d1nexb2 81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIK---YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF----HTPEENPYF 153 (355)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEEETTEE---EEEEEETTSEEEEEECCC-----------CCCEEE----SCTTTCTTE
T ss_pred ccccccccccccccccccccccccccccc---eeeeecCCCcEEEEEccCCceeccccccceeccce----eccccccce
Confidence 998887776654443 345566677765 89999999999999998766443321111100000 000000000
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~ 471 (1715)
......+......+.+++.+++++..|+.|++||+.++ ..+....++...+.++.|++.+
T Consensus 154 ~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~----------- 213 (355)
T d1nexb2 154 VGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM---------KCLYILSGHTDRIYSTIYDHER----------- 213 (355)
T ss_dssp EEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEEETTT-----------
T ss_pred eeeeeeccccccccccccceeeeecccceeeeeecccc---------cceeeeeccccccccccccccc-----------
Confidence 00011112233456678899999999999999999764 3466778888899999999976
Q ss_pred cccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEE
Q 048801 472 KEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMI 551 (1715)
Q Consensus 472 ~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsl 551 (1715)
..+++++.||.|++|++.++. ....+.+|...|.++
T Consensus 214 ---------------~~~~~~~~d~~i~i~d~~~~~-----------------------------~~~~~~~h~~~v~~~ 249 (355)
T d1nexb2 214 ---------------KRCISASMDTTIRIWDLENGE-----------------------------LMYTLQGHTALVGLL 249 (355)
T ss_dssp ---------------TEEEEEETTSCEEEEETTTCC-----------------------------EEEEECCCSSCCCEE
T ss_pred ---------------eeeecccccceEEeeeccccc-----------------------------ccccccccccccccc
Confidence 789999999999999998643 234456788889999
Q ss_pred EeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEE-EEEccc
Q 048801 552 VWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIR-IYEIGR 630 (1715)
Q Consensus 552 afSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~-tl~~h~ 630 (1715)
+|+ +++|++|+.||.|++||+.++... +..|...+.++.+.+.++.+|++| .||.|+|||+.+|+++. .+.+|.
T Consensus 250 ~~~--~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~ 324 (355)
T d1nexb2 250 RLS--DKFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDA 324 (355)
T ss_dssp EEC--SSEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTC
T ss_pred ccc--cceeeeeeccccccccccccccee--cccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCC
Confidence 986 479999999999999999887654 455666666665544477777766 58999999999999885 456678
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 631 FKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 631 ~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
..|.+++|+|+ .+|++++.||.++||-
T Consensus 325 ~~V~~v~~~~~-~~~~~~s~dg~~~l~~ 351 (355)
T d1nexb2 325 DQIWSVNFKGK-TLVAAVEKDGQSFLEI 351 (355)
T ss_dssp SEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred CCEEEEEEcCC-eEEEEEECCCcEEEEE
Confidence 89999999987 4777889999866553
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-33 Score=332.66 Aligned_cols=288 Identities=14% Similarity=0.159 Sum_probs=245.1
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCc---eE--EEeCCCCCeEEEEecCCCCcceEEEEecC
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP---IS--VLRGHTGAVTAIAFSPRPSAIYQLLSSSD 350 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~---l~--~L~gH~~~VtsLafSPdg~~~~~LaSgS~ 350 (1715)
+.+.++ +|...|+|++|+|+|++||+|+ ||.|+|||+.++.. +. ...+|.+.|.+++|+|++. +|++++.
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~---~l~s~~~ 117 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC---TLIVGGE 117 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS---EEEEEES
T ss_pred eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC---EEEEeec
Confidence 455666 6999999999999999999997 79999999976532 22 3357999999999999997 8999999
Q ss_pred CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCC
Q 048801 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSS 430 (1715)
Q Consensus 351 DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~ 430 (1715)
||+|++||+.......... ...|...+.+++|+|++.++++++.++.|++|++.++
T Consensus 118 dg~i~iwd~~~~~~~~~~~-----------------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~- 173 (337)
T d1gxra_ 118 ASTLSIWDLAAPTPRIKAE-----------------------LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ- 173 (337)
T ss_dssp SSEEEEEECCCC--EEEEE-----------------------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-
T ss_pred ccccccccccccccccccc-----------------------ccccccccccccccccccccccccccccccccccccc-
Confidence 9999999987543221111 1234567899999999999999999999999999864
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
.......+|...|.+++|++++ ..+++++.||.|++||+++++..
T Consensus 174 --------~~~~~~~~~~~~v~~l~~s~~~--------------------------~~~~~~~~d~~v~i~d~~~~~~~- 218 (337)
T d1gxra_ 174 --------TLVRQFQGHTDGASCIDISNDG--------------------------TKLWTGGLDNTVRSWDLREGRQL- 218 (337)
T ss_dssp --------EEEEEECCCSSCEEEEEECTTS--------------------------SEEEEEETTSEEEEEETTTTEEE-
T ss_pred --------cccccccccccccccccccccc--------------------------cccccccccccccccccccceee-
Confidence 3456778899999999999976 78999999999999999864421
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCe
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASS 590 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V 590 (1715)
....+...|.+++|+|++.+|++|+.|+.|++||+.+++.. ....|...|
T Consensus 219 -----------------------------~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i 268 (337)
T d1gxra_ 219 -----------------------------QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCV 268 (337)
T ss_dssp -----------------------------EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCE
T ss_pred -----------------------------cccccccceEEEEEcccccccceeccccccccccccccccc-ccccccccc
Confidence 12235678999999999999999999999999999888765 556899999
Q ss_pred EEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 591 YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 591 ~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
++++|+| ++.+|++|+.||.|+|||+.+++++..+. |...|.+++|+|||++||+|+.||.|+|||+
T Consensus 269 ~~v~~s~-~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 269 LSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ceEEECC-CCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 9999999 77899999999999999999999998876 7789999999999999999999999999996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.5e-33 Score=333.66 Aligned_cols=314 Identities=17% Similarity=0.252 Sum_probs=251.3
Q ss_pred EEeCCCcEEEEeCCCCcE----EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe-----------
Q 048801 260 TGSDDRLVKIWSMETAFC----LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR----------- 324 (1715)
Q Consensus 260 TGS~DGtIrIWDl~tgk~----l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~----------- 324 (1715)
.+..++.+.+|+....+. +....+|.+.|+||+|+|||++||+|+ |++|+|||+.+++.+..+.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~ 111 (388)
T d1erja_ 33 KKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPEN 111 (388)
T ss_dssp EEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC----------
T ss_pred ccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccc
Confidence 456777888998765432 223346999999999999999999987 8999999999998777664
Q ss_pred -------CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCC
Q 048801 325 -------GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQS 397 (1715)
Q Consensus 325 -------gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~ 397 (1715)
+|...|++|+|+|++. +|++|+.||.|++||...++..... ..|.
T Consensus 112 ~~~~~~~~~~~~V~~l~~s~~~~---~l~s~~~dg~v~i~~~~~~~~~~~~-------------------------~~h~ 163 (388)
T d1erja_ 112 LNTSSSPSSDLYIRSVCFSPDGK---FLATGAEDRLIRIWDIENRKIVMIL-------------------------QGHE 163 (388)
T ss_dssp -------CCCCBEEEEEECTTSS---EEEEEETTSCEEEEETTTTEEEEEE-------------------------CCCS
T ss_pred cccccccCCCCCEEEEEECCCCC---cceeccccccccccccccccccccc-------------------------cccc
Confidence 3566799999999988 8999999999999999877654332 2356
Q ss_pred cceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccc
Q 048801 398 HQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 398 ~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
..|.+++|++++..+++|+.++.+++||..+.. .......+ ....++.+.+..
T Consensus 164 ~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---------~~~~~~~~-~~~~~~~~~~~~----------------- 216 (388)
T d1erja_ 164 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ---------CSLTLSIE-DGVTTVAVSPGD----------------- 216 (388)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------EEEEEECS-SCEEEEEECSTT-----------------
T ss_pred ccccccccccccccccccccceeeeeeeccccc---------cccccccc-cccccccccCCC-----------------
Confidence 779999999999999999999999999997642 23333333 445556665532
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
+.+|++++.||.|++|++.++.....+. .......+|...|.+++|+|++
T Consensus 217 --------~~~l~~~~~d~~i~i~~~~~~~~~~~~~----------------------~~~~~~~~h~~~v~~l~~s~~~ 266 (388)
T d1erja_ 217 --------GKYIAAGSLDRAVRVWDSETGFLVERLD----------------------SENESGTGHKDSVYSVVFTRDG 266 (388)
T ss_dssp --------CCEEEEEETTSCEEEEETTTCCEEEEEC----------------------------CCCSSCEEEEEECTTS
T ss_pred --------CCeEEEEcCCCeEEEeecccCccceeec----------------------cccccccCCCCCEEEEEECCCC
Confidence 3789999999999999998755322210 1122345678899999999999
Q ss_pred CEEEEEecCCeEEEEECCCCc------------eEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 048801 558 RFVLAAIMDCRICVWNAVDGS------------LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI 625 (1715)
Q Consensus 558 ~~LaTgs~DGtI~IWDl~sg~------------~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t 625 (1715)
.+|++|+.|+.|++||+.++. .......|...|.+++|+| ++.+|++|+.||.|+|||+.+++++.+
T Consensus 267 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~ 345 (388)
T d1erja_ 267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLM 345 (388)
T ss_dssp SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECCCCcEEEE
Confidence 999999999999999997653 3455668999999999999 778999999999999999999999999
Q ss_pred EEcccceEEEEEE------cCCCCEEEEEeCCCeEEEEECC
Q 048801 626 YEIGRFKLVDGKF------SPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 626 l~~h~~~V~svaf------SPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
+.+|.+.|.++++ +|+|.+||+|+.||.|+||++.
T Consensus 346 l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 346 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 9999999999874 6799999999999999999973
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=9.4e-33 Score=324.45 Aligned_cols=289 Identities=12% Similarity=0.122 Sum_probs=241.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCce
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI 320 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l 320 (1715)
.+++.+.+++++|+|+.||.++ ++.|.+|++.++.....+.+|...|++++|+|+|++||+|+.||+|+|||+.++...
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence 3556777899999999999986 567999999999999999999999999999999999999999999999999887654
Q ss_pred --EEEeCCCCCeEEEEecCCCCcceEEEEecC--CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC
Q 048801 321 --SVLRGHTGAVTAIAFSPRPSAIYQLLSSSD--DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396 (1715)
Q Consensus 321 --~~L~gH~~~VtsLafSPdg~~~~~LaSgS~--DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h 396 (1715)
..+.+|...|.+++|+|++. +|++++. +..++||++.+++.... ...|
T Consensus 94 ~~~~~~~~~~~v~~v~~s~d~~---~l~~~~~~~~~~~~v~~~~~~~~~~~-------------------------l~~h 145 (311)
T d1nr0a1 94 LKTTIPVFSGPVKDISWDSESK---RIAAVGEGRERFGHVFLFDTGTSNGN-------------------------LTGQ 145 (311)
T ss_dssp EEEEEECSSSCEEEEEECTTSC---EEEEEECCSSCSEEEEETTTCCBCBC-------------------------CCCC
T ss_pred cccccccccCcccccccccccc---cccccccccccccccccccccccccc-------------------------cccc
Confidence 55788999999999999987 6777765 56799999987764332 2345
Q ss_pred CcceeEEEEccCCCe-EEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccc
Q 048801 397 SHQILCCAYNANGTV-FVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 397 ~~~VtslafSpdG~~-LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
...|++++|+|++.+ |++|+.||.|++||+.+. .....+..|...|+++.|+|++
T Consensus 146 ~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~---------~~~~~~~~~~~~i~~v~~~p~~--------------- 201 (311)
T d1nr0a1 146 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF---------KFKSTFGEHTKFVHSVRYNPDG--------------- 201 (311)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB---------EEEEEECCCSSCEEEEEECTTS---------------
T ss_pred ccccccccccccceeeeccccccccccccccccc---------ccccccccccccccccccCccc---------------
Confidence 677999999999985 888999999999999863 4567788999999999999986
Q ss_pred cccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC
Q 048801 476 VPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL 555 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP 555 (1715)
.+|++++.||.|++||+.++...... ........+|...|++++|+|
T Consensus 202 -----------~~l~~~~~d~~v~~~d~~~~~~~~~~----------------------~~~~~~~~~h~~~V~~~~~s~ 248 (311)
T d1nr0a1 202 -----------SLFASTGGDGTIVLYNGVDGTKTGVF----------------------EDDSLKNVAHSGSVFGLTWSP 248 (311)
T ss_dssp -----------SEEEEEETTSCEEEEETTTCCEEEEC----------------------BCTTSSSCSSSSCEEEEEECT
T ss_pred -----------cccccccccccccccccccccccccc----------------------cccccccccccccccccccCC
Confidence 79999999999999999875432211 011223456888999999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEEEecCCC---CeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 556 DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSA---SSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~---~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
++++|++|+.||.|+|||+.+++++.++..|.. .+.++.|+ +..|++++.||.|++||.+
T Consensus 249 ~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~---~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT---KQALVSISANGFINFVNPE 311 (311)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC---SSCEEEEETTCCEEEEETT
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEec---CCEEEEEECCCEEEEEeCC
Confidence 999999999999999999999999999987653 34555554 4567899999999999973
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.6e-32 Score=315.98 Aligned_cols=293 Identities=16% Similarity=0.221 Sum_probs=246.0
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEE
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVr 355 (1715)
+..++|+||.+.|++|+|+|++.+||||+.||+|+|||+.++..+..+.+|...|++++|+|++. +|++++.|+.+.
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~---~l~~~~~d~~i~ 122 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN---YVACGGLDNICS 122 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSS---EEEEEETTCCEE
T ss_pred eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccce---eeeeecccceee
Confidence 46678999999999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE 435 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~ 435 (1715)
+|+............ ....|...+.+... ..+..++.+..+.....+.....
T Consensus 123 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------ 174 (340)
T d1tbga_ 123 IYNLKTREGNVRVSR---------------------ELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETG------ 174 (340)
T ss_dssp EEESSSSCSCCCEEE---------------------EECCCSSCEEEEEE-EETTEEEEEETTTEEEEEETTTT------
T ss_pred cccccccccccccce---------------------eccccccccccccc-ccccccccccccccccccccccc------
Confidence 999875543221100 01122333344433 44556777778888888887653
Q ss_pred CCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccc
Q 048801 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW 515 (1715)
Q Consensus 436 ~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~ 515 (1715)
........+...+....+.+.. ..+++++.|+.|++||++++.
T Consensus 175 ---~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~d~~v~i~d~~~~~-------- 217 (340)
T d1tbga_ 175 ---QQTTTFTGHTGDVMSLSLAPDT--------------------------RLFVSGACDASAKLWDVREGM-------- 217 (340)
T ss_dssp ---EEEEEEECCSSCEEEEEECTTS--------------------------SEEEEEETTTEEEEEETTTTE--------
T ss_pred ---cccccccccceeEeeecccccc--------------------------ceeEEeecCceEEEEECCCCc--------
Confidence 2344555667788888887764 789999999999999998643
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe--cCCCCeEEE
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT--GHSASSYVL 593 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~--gH~~~V~sL 593 (1715)
....+.+|...|++++|+|++.+|++|+.|+.|++|++.....+..+. .|...|.++
T Consensus 218 ---------------------~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 276 (340)
T d1tbga_ 218 ---------------------CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp ---------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred ---------------------EEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEE
Confidence 233456788899999999999999999999999999999998887764 567789999
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 594 DVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 594 afSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
+|+| ++.+|++|+.||.|+|||+.+++++..+.+|...|.+++|+|||.+||+|+.||.|+|||
T Consensus 277 ~~s~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 277 SFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECS-SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EECC-CCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 9999 778999999999999999999999999999999999999999999999999999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6.5e-32 Score=317.25 Aligned_cols=284 Identities=16% Similarity=0.188 Sum_probs=239.5
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCC
Q 048801 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQ 363 (1715)
Q Consensus 284 Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~ 363 (1715)
+.+.+.+++++|+|..||.++ ++.|.+|++.++.....+.+|...|++++|+|++. +|++|+.||+|+|||+.++.
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~---~latg~~dg~i~iwd~~~~~ 91 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY---YCASGDVHGNVRIWDTTQTT 91 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS---EEEEEETTSEEEEEESSSTT
T ss_pred CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCC---eEeccccCceEeeeeeeccc
Confidence 455677899999999999985 56799999999999999999999999999999987 89999999999999998776
Q ss_pred CcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC--CCeEEEEeCCCCCccCCCCCceee
Q 048801 364 YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS--DTFARVWSACKSSVEDSEQPIHEL 441 (1715)
Q Consensus 364 ~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~--DG~IrVWDl~t~~~~~~~~~~~~l 441 (1715)
...... ...|...|.+++|+|++++|++++. +..++||++.+++ ..
T Consensus 92 ~~~~~~-----------------------~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~---------~~ 139 (311)
T d1nr0a1 92 HILKTT-----------------------IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT---------SN 139 (311)
T ss_dssp CCEEEE-----------------------EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC---------BC
T ss_pred cccccc-----------------------cccccCcccccccccccccccccccccccccccccccccc---------cc
Confidence 443221 1234667999999999999998875 4569999998653 35
Q ss_pred eeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccc
Q 048801 442 DVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHL 521 (1715)
Q Consensus 442 ~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l 521 (1715)
..+.+|...|.+++|+|++ ...|++|+.||.|++||+++++
T Consensus 140 ~~l~~h~~~v~~v~~~~~~-------------------------~~~l~sgs~d~~i~i~d~~~~~-------------- 180 (311)
T d1nr0a1 140 GNLTGQARAMNSVDFKPSR-------------------------PFRIISGSDDNTVAIFEGPPFK-------------- 180 (311)
T ss_dssp BCCCCCSSCEEEEEECSSS-------------------------SCEEEEEETTSCEEEEETTTBE--------------
T ss_pred ccccccccccccccccccc-------------------------eeeecccccccccccccccccc--------------
Confidence 5678999999999999986 3468999999999999998643
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe-------cCCCCeEEEE
Q 048801 522 KVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT-------GHSASSYVLD 594 (1715)
Q Consensus 522 ~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~-------gH~~~V~sLa 594 (1715)
.......|...|++++|+|++++|++|+.|+.|++||+.++..+..+. +|.+.|++++
T Consensus 181 ---------------~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 245 (311)
T d1nr0a1 181 ---------------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 245 (311)
T ss_dssp ---------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEE
T ss_pred ---------------cccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 123345678889999999999999999999999999999998888764 6889999999
Q ss_pred EccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccc---eEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 595 VHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRF---KLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 595 fSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~---~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
|+| ++.+|++|+.||+|+|||+.++++++++..+.. .+.++.| ++.+|++++.||.|++||.+
T Consensus 246 ~s~-~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 246 WSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPE 311 (311)
T ss_dssp ECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred cCC-CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence 999 778999999999999999999999999986543 3444444 55679999999999999963
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.2e-32 Score=311.57 Aligned_cols=290 Identities=17% Similarity=0.165 Sum_probs=229.7
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec-CCCCCeEEEEECCCCCEEEEEeCCCeeEE
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR-GHEGDITDLAVSSNNTLVASASNDFVIRV 311 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~-gHs~~VtsLafSpDg~lLASGS~DGtIrV 311 (1715)
+...+++.||.+.|+||+|+|||++||||+.||+|+|||+.+++++..+. +|...|++++|+|++.++ +++.|+.|++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~ 80 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKV 80 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEE
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee-cccceeeEEE
Confidence 35678999999999999999999999999999999999999999998884 799999999999999754 5667899999
Q ss_pred EECCCCC---ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCC
Q 048801 312 WRLPDGL---PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 312 WDl~tg~---~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
|++.... .......+...+.+++|++++. +++ ++.++.+.+|+..... ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~---~~~-~~~~~~i~~~~~~~~~---~~-------------------- 133 (299)
T d1nr0a2 81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGD---IAV-AACYKHIAIYSHGKLT---EV-------------------- 133 (299)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSS---CEE-EEESSEEEEEETTEEE---EE--------------------
T ss_pred eccCCccccccccccccccccccccccccccc---ccc-cccccccccccccccc---cc--------------------
Confidence 9986532 2233445778899999999986 344 4456789999854211 11
Q ss_pred CCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccc
Q 048801 389 PSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~ 468 (1715)
.....+.+++|+|++++|++|+.||.|++||+.+... .......|...|.+++|+|++
T Consensus 134 ------~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~--------~~~~~~~~~~~i~~~~~~~~~-------- 191 (299)
T d1nr0a2 134 ------PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV--------SEVKTIVHPAEITSVAFSNNG-------- 191 (299)
T ss_dssp ------ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE--------EEEEEEECSSCEEEEEECTTS--------
T ss_pred ------ccccccccccccccccccccccccccccccccccccc--------ccccccccccccccccccccc--------
Confidence 0133478999999999999999999999999976431 112345688899999999986
Q ss_pred ccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCe
Q 048801 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548 (1715)
Q Consensus 469 ~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V 548 (1715)
.+|++++.||.|++||+.++.... ....+..|...|
T Consensus 192 ------------------~~l~~~~~d~~i~~~~~~~~~~~~--------------------------~~~~~~~h~~~v 227 (299)
T d1nr0a2 192 ------------------AFLVATDQSRKVIPYSVANNFELA--------------------------HTNSWTFHTAKV 227 (299)
T ss_dssp ------------------SEEEEEETTSCEEEEEGGGTTEES--------------------------CCCCCCCCSSCE
T ss_pred ------------------cccccccccccccccccccccccc--------------------------cccccccccccc
Confidence 789999999999999987643111 122345678899
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEE--ecC-CCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 549 NMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL--TGH-SASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 549 tslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL--~gH-~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
++++|+|++.+|++|+.||.|+|||+.++.....+ ..| ...|.++.|.+ +.+|++|+.||+|+|||+.
T Consensus 228 ~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 228 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN--ETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE--TTEEEEEETTSCEEEEECC
T ss_pred ccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECC--CCEEEEEeCCCEEEEEecc
Confidence 99999999999999999999999999887644333 333 45677776644 4678899999999999983
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.7e-32 Score=325.83 Aligned_cols=297 Identities=16% Similarity=0.180 Sum_probs=236.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCc-
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF--CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP- 319 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk--~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~- 319 (1715)
..+|+|++|+|||++||+|+.||.|+||++.+++ .+..+++|.++|++|+|+|++++|++|+.|++|+|||+.++..
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence 4789999999999999999999999999998775 6778899999999999999999999999999999999987754
Q ss_pred -eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCc
Q 048801 320 -ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH 398 (1715)
Q Consensus 320 -l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~ 398 (1715)
...+.+|...|++++|+|++. .|++++.|++|++|++.......... .....|..
T Consensus 87 ~~~~~~~~~~~v~~i~~~p~~~---~l~~~s~d~~i~i~~~~~~~~~~~~~---------------------~~~~~~~~ 142 (371)
T d1k8kc_ 87 PTLVILRINRAARCVRWAPNEK---KFAVGSGSRVISICYFEQENDWWVCK---------------------HIKKPIRS 142 (371)
T ss_dssp EEEECCCCSSCEEEEEECTTSS---EEEEEETTSSEEEEEEETTTTEEEEE---------------------EECTTCCS
T ss_pred cccccccccccccccccccccc---cceeecccCcceeeeeeccccccccc---------------------cccccccc
Confidence 445568899999999999987 89999999999999987654322211 11223566
Q ss_pred ceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCC---------CCceeeeeecCCCCCeeEEEEccCcccccccccc
Q 048801 399 QILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE---------QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSD 469 (1715)
Q Consensus 399 ~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~---------~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~ 469 (1715)
.|.+++|+|++.+|++|+.||.|++|++......... .....+....+|...|.+++|+|++
T Consensus 143 ~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--------- 213 (371)
T d1k8kc_ 143 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG--------- 213 (371)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS---------
T ss_pred ccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc---------
Confidence 7999999999999999999999999998765422111 1123455667899999999999986
Q ss_pred cccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCee
Q 048801 470 AFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVN 549 (1715)
Q Consensus 470 ~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vt 549 (1715)
+.|++++.||.|++||+.++. .+..+..|..+|.
T Consensus 214 -----------------~~l~s~~~d~~i~iwd~~~~~-----------------------------~~~~~~~~~~~v~ 247 (371)
T d1k8kc_ 214 -----------------SRVAWVSHDSTVCLADADKKM-----------------------------AVATLASETLPLL 247 (371)
T ss_dssp -----------------SEEEEEETTTEEEEEEGGGTT-----------------------------EEEEEECSSCCEE
T ss_pred -----------------ccccccccCCcceEEeeeccc-----------------------------ceeeeecccccce
Confidence 789999999999999997633 2334556778899
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEECC--CCceEEE---------------------------------------EecCCC
Q 048801 550 MIVWSLDNRFVLAAIMDCRICVWNAV--DGSLVHS---------------------------------------LTGHSA 588 (1715)
Q Consensus 550 slafSPDG~~LaTgs~DGtI~IWDl~--sg~~l~t---------------------------------------L~gH~~ 588 (1715)
+++|+|++.+|++|. |+.+++|... .+..... ...|.+
T Consensus 248 s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~ 326 (371)
T d1k8kc_ 248 AVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN 326 (371)
T ss_dssp EEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSS
T ss_pred eeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccC
Confidence 999999998888665 6766665432 2211100 013888
Q ss_pred CeEEEEEccCCC---cEEEEEeCCCcEEEEECCC
Q 048801 589 SSYVLDVHPFNP---RIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 589 ~V~sLafSP~dg---~lLaSgs~DGtI~VWDl~t 619 (1715)
.|+++++++.+. ..++|+|.||.|+|||+.+
T Consensus 327 ~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 327 SVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp CEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred CEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 999999987433 4689999999999999854
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.3e-31 Score=320.95 Aligned_cols=308 Identities=12% Similarity=0.162 Sum_probs=242.5
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC--ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC
Q 048801 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL--PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY 361 (1715)
Q Consensus 284 Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~--~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t 361 (1715)
+..+|+|++|+|||++||+|+.||.|+|||+.+++ .+..+.+|.+.|++|+|+|++. +|++++.|++|+|||+.+
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~---~l~s~s~D~~i~vWd~~~ 82 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN---RIVTCGTDRNAYVWTLKG 82 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT---EEEEEETTSCEEEEEEET
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCC---EEEEEECCCeEEEEeecc
Confidence 35789999999999999999999999999998775 5677899999999999999987 899999999999999987
Q ss_pred CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceee
Q 048801 362 SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHEL 441 (1715)
Q Consensus 362 g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l 441 (1715)
+.....+.. ..|...|++++|+|+++.|++|+.|+.|++|++..... .....
T Consensus 83 ~~~~~~~~~-----------------------~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~-----~~~~~ 134 (371)
T d1k8kc_ 83 RTWKPTLVI-----------------------LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND-----WWVCK 134 (371)
T ss_dssp TEEEEEEEC-----------------------CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT-----EEEEE
T ss_pred ccccccccc-----------------------ccccccccccccccccccceeecccCcceeeeeecccc-----ccccc
Confidence 654433322 22456799999999999999999999999999875421 12234
Q ss_pred eeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccc
Q 048801 442 DVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHL 521 (1715)
Q Consensus 442 ~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l 521 (1715)
.....|...|.+++|+|++ .+|++|+.||+|++|++...........
T Consensus 135 ~~~~~~~~~v~~v~~~p~~--------------------------~~l~s~s~D~~v~v~~~~~~~~~~~~~~------- 181 (371)
T d1k8kc_ 135 HIKKPIRSTVLSLDWHPNS--------------------------VLLAAGSCDFKCRIFSAYIKEVEERPAP------- 181 (371)
T ss_dssp EECTTCCSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEECCCTTTSCCCCC-------
T ss_pred ccccccccccccccccccc--------------------------cceeccccCcEEEEEeeccCcccccccc-------
Confidence 4567889999999999986 7899999999999999876442211100
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCc
Q 048801 522 KVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPR 601 (1715)
Q Consensus 522 ~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~ 601 (1715)
.........+........|...|.+++|+|+|++|++++.|+.|++||+.++..+..+.+|..+|.+++|+| ++.
T Consensus 182 ----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~-d~~ 256 (371)
T d1k8kc_ 182 ----TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-ESS 256 (371)
T ss_dssp ----BTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-TTE
T ss_pred ----ccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecC-CCC
Confidence 000111122334455677888999999999999999999999999999999999999999999999999999 677
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEE-----------------------------------------EcccceEEEEEEcC
Q 048801 602 IAMSAGYDGRTIVWDIWEGTPIRIY-----------------------------------------EIGRFKLVDGKFSP 640 (1715)
Q Consensus 602 lLaSgs~DGtI~VWDl~tgk~l~tl-----------------------------------------~~h~~~V~svafSP 640 (1715)
+|++ +.|+.+++|..........+ ..|.+.|.++++.+
T Consensus 257 ~la~-g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~ 335 (371)
T d1k8kc_ 257 LVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLS 335 (371)
T ss_dssp EEEE-ETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEE
T ss_pred EEEE-EcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeC
Confidence 7765 55787777654322111100 02677899999988
Q ss_pred CC----CEEEEEeCCCeEEEEECCC
Q 048801 641 DG----TSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 641 DG----~~LAsgs~DG~I~IWdl~t 661 (1715)
.+ ..|++++.||.|+||++.+
T Consensus 336 ~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 336 GGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp STTTSCSEEEEEETTSEEEEEEHHH
T ss_pred CCCcceEEEEEEcCCCeEEEEeCCc
Confidence 65 3689999999999999854
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.5e-31 Score=307.64 Aligned_cols=290 Identities=18% Similarity=0.197 Sum_probs=231.4
Q ss_pred CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe-CCCCCeEEEEecCCCCcceEEEEecCCCc
Q 048801 275 AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR-GHTGAVTAIAFSPRPSAIYQLLSSSDDGT 353 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~-gH~~~VtsLafSPdg~~~~~LaSgS~DGt 353 (1715)
|...+++.||.+.|++|+|+|++++||||+.||+|+|||+.+++.+..+. +|...|++++|+|++. +++++.|+.
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~----~~~~~~d~~ 77 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD----LFTVSWDDH 77 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC----EEEEETTTE
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce----eecccceee
Confidence 67789999999999999999999999999999999999999999888874 7899999999999975 677788999
Q ss_pred EEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccC
Q 048801 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVED 433 (1715)
Q Consensus 354 VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~ 433 (1715)
+++|++........ ......+...+.+++|+++|.++++++ ++.+.+|+...
T Consensus 78 v~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~----- 129 (299)
T d1nr0a2 78 LKVVPAGGSGVDSS----------------------KAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK----- 129 (299)
T ss_dssp EEEECSSSSSSCTT----------------------SCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE-----
T ss_pred EEEeccCCcccccc----------------------ccccccccccccccccccccccccccc-ccccccccccc-----
Confidence 99999865432110 011122355688999999999887765 57899998642
Q ss_pred CCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc
Q 048801 434 SEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG 513 (1715)
Q Consensus 434 ~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~ 513 (1715)
..... ....+.+++|+|++ ..|++|+.||.|.+||+.++...
T Consensus 130 ------~~~~~--~~~~~~~~~~s~~~--------------------------~~l~~g~~dg~i~~~d~~~~~~~---- 171 (299)
T d1nr0a2 130 ------LTEVP--ISYNSSCVALSNDK--------------------------QFVAVGGQDSKVHVYKLSGASVS---- 171 (299)
T ss_dssp ------EEEEE--CSSCEEEEEECTTS--------------------------CEEEEEETTSEEEEEEEETTEEE----
T ss_pred ------ccccc--cccccccccccccc--------------------------ccccccccccccccccccccccc----
Confidence 12222 23457889999986 78999999999999998763311
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEE---EEecCCCCe
Q 048801 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVH---SLTGHSASS 590 (1715)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~---tL~gH~~~V 590 (1715)
......|...|++++|+|++.+|++++.|+.|++||+.++..+. .+.+|...|
T Consensus 172 ------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v 227 (299)
T d1nr0a2 172 ------------------------EVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV 227 (299)
T ss_dssp ------------------------EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred ------------------------cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 01233567789999999999999999999999999998876553 456799999
Q ss_pred EEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE--cccc-eEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 591 YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE--IGRF-KLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 591 ~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~--~h~~-~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
++++|+| ++.+|++|+.||.|+|||+.++.....+. .|.. .+..+ +++++.+|++++.||.|+|||+.
T Consensus 228 ~~l~~s~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 228 ACVSWSP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEEEECT-TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEETTSCEEEEECC
T ss_pred ccccccc-cccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeCCCEEEEEecc
Confidence 9999999 77899999999999999998876544333 3333 45545 55678899999999999999983
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1e-29 Score=294.20 Aligned_cols=320 Identities=23% Similarity=0.274 Sum_probs=238.6
Q ss_pred EEEecCCCCCe-EEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEE
Q 048801 278 LASCRGHEGDI-TDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356 (1715)
Q Consensus 278 l~tL~gHs~~V-tsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrI 356 (1715)
..+|+||...| +|++| ++++||||+.||+|+|||+.+++++.++.+|.+.|++|+|+|++ +|++++.||+|++
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~----~l~s~s~D~~i~i 78 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG----ILVSGSTDRTVRV 78 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT----EEEEEETTCCEEE
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC----EEEEEeccccccc
Confidence 56799998875 66655 68899999999999999999999999999999999999999864 7999999999999
Q ss_pred EecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCC
Q 048801 357 WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQ 436 (1715)
Q Consensus 357 WDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~ 436 (1715)
|++........... ..+...+..+.+.+++.++++++.|+.|++|++.+........
T Consensus 79 w~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~ 135 (355)
T d1nexb2 79 WDIKKGCCTHVFEG-----------------------HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 135 (355)
T ss_dssp EETTTTEEEEEECC-----------------------CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC--------
T ss_pred cccccccccccccc-----------------------ccccccccccccccccceeeeecCCCcEEEEEccCCceecccc
Confidence 99987765433321 1123345677888999999999999999999997654211100
Q ss_pred C--------------ceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEe
Q 048801 437 P--------------IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWI 502 (1715)
Q Consensus 437 ~--------------~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWD 502 (1715)
. ...+.....|...+.... ..+..++++..|+.|++||
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------------------------~~~~~~~~~~~d~~i~~~d 187 (355)
T d1nexb2 136 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS----------------------------GHGNIVVSGSYDNTLIVWD 187 (355)
T ss_dssp ---CCCEEESCTTTCTTEEEEEECCSSCEEEEE----------------------------EETTEEEEEETTSCEEEEE
T ss_pred ccceeccceeccccccceeeeeeeccccccccc----------------------------cccceeeeecccceeeeee
Confidence 0 000111112222222211 1247899999999999999
Q ss_pred cCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEE
Q 048801 503 PRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHS 582 (1715)
Q Consensus 503 l~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~t 582 (1715)
+.+++. ......+...+.++.|++++.++++++.|+.|++|++.++..+..
T Consensus 188 ~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 238 (355)
T d1nexb2 188 VAQMKC-----------------------------LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT 238 (355)
T ss_dssp TTTTEE-----------------------------EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred cccccc-----------------------------eeeeeccccccccccccccceeeecccccceEEeeeccccccccc
Confidence 986431 223344566788999999999999999999999999999999999
Q ss_pred EecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEE-EEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 583 LTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDG-KFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 583 L~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~sv-afSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
+.+|...|.+++|++ .+|++|+.||.|++||+.++..... .|...+..+ .|++++.+|++| .||.|+|||+.+
T Consensus 239 ~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~t 312 (355)
T d1nexb2 239 LQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFS--YHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRS 312 (355)
T ss_dssp ECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCCEEEE--EECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTT
T ss_pred ccccccccccccccc---ceeeeeecccccccccccccceecc--cccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCC
Confidence 999999999999965 6899999999999999988876544 455555554 667788877666 589999999999
Q ss_pred Cccccc-------cccceeecCCCccEEEcCCCCe
Q 048801 662 GESQKD-------AKYDQFFLGDYRPLIRDSLGNV 689 (1715)
Q Consensus 662 Ge~~k~-------~~~~~~fs~D~r~L~~d~~g~v 689 (1715)
|+.+.. ......|+++...++...+|.+
T Consensus 313 g~~~~~~~~~~~~~V~~v~~~~~~~~~~~s~dg~~ 347 (355)
T d1nexb2 313 GKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQS 347 (355)
T ss_dssp CCBCCSCTTTTCSEEEEEEEETTEEEEEEESSSCE
T ss_pred CCEEEEEecCCCCCEEEEEEcCCeEEEEEECCCcE
Confidence 987632 1234567776433333456653
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=4.5e-30 Score=291.75 Aligned_cols=304 Identities=18% Similarity=0.312 Sum_probs=253.9
Q ss_pred CCCCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 048801 189 HMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVK 268 (1715)
Q Consensus 189 ~~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIr 268 (1715)
..|...|.++.|.+.+..++. +..+.....|.+.+.+.+.+|.+|.+.|++++|++++.++++++.++.+.
T Consensus 14 ~GH~~~I~~l~~sp~~~~l~s---------~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~ 84 (317)
T d1vyhc1 14 SGHRSPVTRVIFHPVFSVMVS---------ASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 84 (317)
T ss_dssp ECCSSCEEEEEECSSSSEEEE---------EESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred cCCCCCeEEEEEcCCCCEEEE---------EeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccc
Confidence 457888999999877644333 33344444556677888999999999999999999999999999999999
Q ss_pred EEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEe
Q 048801 269 IWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348 (1715)
Q Consensus 269 IWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSg 348 (1715)
+|+.........+.+|...+.++.|++++..|++++.|+.+++||+.++..+..+.+|...+.+++|++++. +|+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~ 161 (317)
T d1vyhc1 85 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT---LIASC 161 (317)
T ss_dssp EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS---EEEEE
T ss_pred cccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCC---EEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 89999
Q ss_pred cCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCC
Q 048801 349 SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 349 S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t 428 (1715)
+.|+.|++|++.++.....+. .+...+.+++|+|++..+......+...
T Consensus 162 ~~d~~v~~~~~~~~~~~~~~~-------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~------ 210 (317)
T d1vyhc1 162 SNDQTVRVWVVATKECKAELR-------------------------EHRHVVECISWAPESSYSSISEATGSET------ 210 (317)
T ss_dssp ETTSCEEEEETTTCCEEEEEC-------------------------CCSSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred eCCCeEEEEeeccceeeEEEe-------------------------cCCCCceEEEEeeccccceeecccccee------
Confidence 999999999998876544331 2355688899988765443322211111
Q ss_pred CCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCcc
Q 048801 429 SSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS 508 (1715)
Q Consensus 429 ~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~ 508 (1715)
..+... ...+++++.||.|++|++.+++
T Consensus 211 -------------------------~~~~~~--------------------------~~~~~~~~~d~~i~~~~~~~~~- 238 (317)
T d1vyhc1 211 -------------------------KKSGKP--------------------------GPFLLSGSRDKTIKMWDVSTGM- 238 (317)
T ss_dssp ---------------------------------------------------------CCEEEEEETTSEEEEEETTTTE-
T ss_pred -------------------------eeeccC--------------------------CceeEeccCCCEEEEEECCCCc-
Confidence 111111 2588999999999999998643
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCC
Q 048801 509 HGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSA 588 (1715)
Q Consensus 509 ~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~ 588 (1715)
.+..+.+|...|.+++|+|++++|++|+.||.|+|||+.+++++.++.+|.+
T Consensus 239 ----------------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~ 290 (317)
T d1vyhc1 239 ----------------------------CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH 290 (317)
T ss_dssp ----------------------------EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS
T ss_pred ----------------------------EEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC
Confidence 2344567888999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 589 SSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 589 ~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
.|++++|+| ++.+|++|+.||+|+|||
T Consensus 291 ~V~~~~~s~-~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 291 FVTSLDFHK-TAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CEEEEEECS-SSSCEEEEETTSEEEEEC
T ss_pred CEEEEEEcC-CCCEEEEEeCCCeEEEeC
Confidence 999999999 677889999999999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.3e-28 Score=282.10 Aligned_cols=317 Identities=12% Similarity=0.038 Sum_probs=232.0
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEE---EEecCCCCCeEEEEECCC-CCEEEEEeCCCe
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCL---ASCRGHEGDITDLAVSSN-NTLVASASNDFV 308 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l---~tL~gHs~~VtsLafSpD-g~lLASGS~DGt 308 (1715)
|+.++.+++|.+.|++|+|+|+|++||+|+.||+|+|||+.++... ....+|.++|++++|+++ +.+|++|+.||.
T Consensus 1 ~~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~ 80 (342)
T d1yfqa_ 1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred CCeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence 5678889999999999999999999999999999999999765432 333469999999999986 568999999999
Q ss_pred eEEEECCCCCceEEEeCCCCCe-EEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 309 IRVWRLPDGLPISVLRGHTGAV-TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 309 IrVWDl~tg~~l~~L~gH~~~V-tsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
|++|++..+........+...+ ....+.++.. .+++++.++++++||++.+...........
T Consensus 81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~-------------- 143 (342)
T d1yfqa_ 81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDD---KLIAASWDGLIEVIDPRNYGDGVIAVKNLN-------------- 143 (342)
T ss_dssp EEEECSSSSSSEEECBSCCCCSCEEEEEEETTT---EEEEEETTSEEEEECHHHHTTBCEEEEESC--------------
T ss_pred eeeeecccccccccccccccccccccccccccc---cccccccccccceeeccccccceeeecccc--------------
Confidence 9999999888877776555544 4444555554 899999999999999876554333211110
Q ss_pred CCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccc
Q 048801 388 GPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAM 467 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~ 467 (1715)
..........+.+.+.+..+++++.|+.|++|++..... .........+...+.++.+.+..
T Consensus 144 -----~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------- 205 (342)
T d1yfqa_ 144 -----SNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED------DNGTIEESGLKYQIRDVALLPKE------- 205 (342)
T ss_dssp -----SSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT------CCCEEEECSCSSCEEEEEECSGG-------
T ss_pred -----cccccceeeeeeeeccCCceeeecCCCcEEEEecccCcc------cceeeeecccccceeeeEeecCC-------
Confidence 011122345677788899999999999999999976532 12223334455566666665543
Q ss_pred cccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCC
Q 048801 468 SDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG 547 (1715)
Q Consensus 468 ~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~ 547 (1715)
...+++++.||.+.+|++.............. +. ..........|...
T Consensus 206 ------------------~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~---~~-----------~~~~~~~~~~~~~~ 253 (342)
T d1yfqa_ 206 ------------------QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA---FR-----------CHRLNLKDTNLAYP 253 (342)
T ss_dssp ------------------GCEEEEEETTSEEEEEECCTTCCSTTCTTCEE---EE-----------CCCCCTTCCSSCCC
T ss_pred ------------------CCEEEeecCCCeEEEEEecCCcceeeccccce---ee-----------eeeeccCCCccccc
Confidence 36899999999999999875432211110000 00 00111223456778
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 548 VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
|++++|+|++.+||+|+.||.|+|||+.+++.+..+..+ ..+..++|+| ++.++++|+.|+.+++|...
T Consensus 254 v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~-~~~~l~~a~sdd~~~~~~~~ 322 (342)
T d1yfqa_ 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIAC-SDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEE-CSSEEEEEEECTHHHHCSSS
T ss_pred ceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEe-CCCEEEEEEcCCcEEEeeee
Confidence 999999999999999999999999999999999888643 2345677888 66788888889888888753
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7.5e-28 Score=276.90 Aligned_cols=310 Identities=23% Similarity=0.358 Sum_probs=237.3
Q ss_pred EeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec
Q 048801 270 WSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS 349 (1715)
Q Consensus 270 WDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS 349 (1715)
|+..+.++..+|+||.+.|.+ +++++|++||||+.||+|+|||+.+++++.++.+|.+.|++++|+++ +|++++
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~-----~l~s~s 74 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN-----IIISGS 74 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT-----EEEEEE
T ss_pred CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC-----ccccce
Confidence 666677888999999999865 46668999999999999999999999999999999999999999874 799999
Q ss_pred CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCC
Q 048801 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~ 429 (1715)
.|+++++|+............ +...+....+ ....++.+..|+.+.+|+..++
T Consensus 75 ~D~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~ 127 (342)
T d2ovrb2 75 TDRTLKVWNAETGECIHTLYG-------------------------HTSTVRCMHL--HEKRVVSGSRDATLRVWDIETG 127 (342)
T ss_dssp TTSCEEEEETTTTEEEEEECC-------------------------CSSCEEEEEE--ETTEEEEEETTSEEEEEESSSC
T ss_pred ecccccccccccccceecccc-------------------------cceeEeeeec--ccccccccccceeEEEeecccc
Confidence 999999999876553322211 1222333333 4457788889999999999875
Q ss_pred CccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccC
Q 048801 430 SVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 509 (1715)
Q Consensus 430 ~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~ 509 (1715)
.. ...+..+....... ... ...+++++.|+.|++||+.....
T Consensus 128 ~~---------~~~~~~~~~~~~~~--~~~--------------------------~~~~~~~~~d~~i~~~d~~~~~~- 169 (342)
T d2ovrb2 128 QC---------LHVLMGHVAAVRCV--QYD--------------------------GRRVVSGAYDFMVKVWDPETETC- 169 (342)
T ss_dssp CE---------EEEEECCSSCEEEE--EEC--------------------------SSCEEEEETTSCEEEEEGGGTEE-
T ss_pred cc---------eeeeecccccceee--ccc--------------------------cceeeeecCCCeEEEeeccccee-
Confidence 32 22233232222222 111 26889999999999999875331
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCC
Q 048801 510 GKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSAS 589 (1715)
Q Consensus 510 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~ 589 (1715)
...+.+|...+ ..+++++.+|++|+.||.|++||+..++++..+.+|...
T Consensus 170 ----------------------------~~~~~~~~~~~--~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~ 219 (342)
T d2ovrb2 170 ----------------------------LHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 219 (342)
T ss_dssp ----------------------------EEEECCCSSCE--EEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSC
T ss_pred ----------------------------eEEEcCccccc--ccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccc
Confidence 12233444444 445568899999999999999999999999999999999
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEccc---ceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 590 SYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGR---FKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 590 V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~---~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
|.++++++ .+|++|+.||.|++||+...+....+..+. ..+.++.| ++.+|++|+.||.|+|||+.+|+.++
T Consensus 220 v~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~ 294 (342)
T d2ovrb2 220 TSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIR 294 (342)
T ss_dssp EEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred eeEEecCC---CEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEE
Confidence 99998865 689999999999999999999888887543 34555555 56799999999999999999998764
Q ss_pred cc-----------ccceeecCCCccEEEcC
Q 048801 667 DA-----------KYDQFFLGDYRPLIRDS 685 (1715)
Q Consensus 667 ~~-----------~~~~~fs~D~r~L~~d~ 685 (1715)
.. .....|++++..|+...
T Consensus 295 ~~~~~~~~~~~~~v~~v~~s~~~~~la~g~ 324 (342)
T d2ovrb2 295 NLVTLESGGSGGVVWRIRASNTKLVCAVGS 324 (342)
T ss_dssp EEEECTTGGGTCEEEEEEECSSEEEEEEEC
T ss_pred EEecccCCCCCCCEEEEEECCCCCEEEEEe
Confidence 32 23457888888777644
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.4e-27 Score=268.35 Aligned_cols=280 Identities=21% Similarity=0.384 Sum_probs=222.0
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
++.++.+.+|...|+|++| ||++||||+.||+|+|||+.+++++.++.+|.+.|++|+| ++++|++|+.|+.|++|
T Consensus 5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 80 (293)
T ss_dssp CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccc
Confidence 4556667789999999765 7999999999999999999999999999999999999987 67899999999999999
Q ss_pred ECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCC
Q 048801 313 RLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392 (1715)
Q Consensus 313 Dl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~ 392 (1715)
++..+........+........ +... .++++..++.+.+|++...........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 133 (293)
T d1p22a2 81 DVNTGEMLNTLIHHCEAVLHLR--FNNG---MMVTCSKDRSIAVWDMASPTDITLRRV---------------------- 133 (293)
T ss_dssp ESSSCCEEEEECCCCSCEEEEE--CCTT---EEEEEETTSCEEEEECSSSSCCEEEEE----------------------
T ss_pred cccccccccccccccccccccc--cccc---ceeecccccceeEeecccccccccccc----------------------
Confidence 9999988777765555444333 3333 789999999999999886654332211
Q ss_pred CCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccc
Q 048801 393 NGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFK 472 (1715)
Q Consensus 393 ~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~ 472 (1715)
...+...|.++.+. ...+++++.|+.|++||+.+++ .+..+.++...|..+.+++
T Consensus 134 ~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~---------~~~~~~~~~~~v~~~~~~~-------------- 188 (293)
T d1p22a2 134 LVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCE---------FVRTLNGHKRGIACLQYRD-------------- 188 (293)
T ss_dssp ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCC---------EEEEEECCSSCEEEEEEET--------------
T ss_pred ccccccccccceec--ccccccccCCCceeeecCCCCc---------EEEEEcccccccccccCCC--------------
Confidence 12234456666665 4578888999999999998743 4667788888888888764
Q ss_pred ccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 048801 473 EENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIV 552 (1715)
Q Consensus 473 ~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsla 552 (1715)
..+++++.||.|++||+.+... +.....+...+. .
T Consensus 189 --------------~~l~~~~~dg~i~i~d~~~~~~-----------------------------~~~~~~~~~~v~--~ 223 (293)
T d1p22a2 189 --------------RLVVSGSSDNTIRLWDIECGAC-----------------------------LRVLEGHEELVR--C 223 (293)
T ss_dssp --------------TEEEEEETTSCEEEEETTTCCE-----------------------------EEEECCCSSCEE--E
T ss_pred --------------CeEEEecCCCEEEEEeccccee-----------------------------eeeecccceeee--e
Confidence 5899999999999999986432 222334444554 4
Q ss_pred eCCCCCEEEEEecCCeEEEEECCC---------CceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 553 WSLDNRFVLAAIMDCRICVWNAVD---------GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 553 fSPDG~~LaTgs~DGtI~IWDl~s---------g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
+++++.+|++|+.||.|+|||+.. ..++..+.+|.+.|++++|+ +.+|+||+.||+|+|||
T Consensus 224 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d---~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD---EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC---SSCEEECCSSSEEEEEC
T ss_pred ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc---CCEEEEEecCCEEEEeC
Confidence 567889999999999999999743 45788999999999999995 46789999999999997
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=5.6e-28 Score=284.34 Aligned_cols=285 Identities=14% Similarity=0.115 Sum_probs=218.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCC-cEEEEeCCCC--cEEEEecCCC-CCeEEEEECC--CCCEEEEEeCCCeeEEEECCCCC
Q 048801 245 AVYCAIFDRSGRFVITGSDDR-LVKIWSMETA--FCLASCRGHE-GDITDLAVSS--NNTLVASASNDFVIRVWRLPDGL 318 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DG-tIrIWDl~tg--k~l~tL~gHs-~~VtsLafSp--Dg~lLASGS~DGtIrVWDl~tg~ 318 (1715)
.+++++|+|+|..||.++.+. .|+.|+.... ..+..+.+|. ..|++++|+| ++.+||+|+.||+|+|||+..+.
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence 467899999999999887654 3566765433 4567788875 6799999998 67899999999999999987654
Q ss_pred ce--------EEEeCCCCCeEEEEecCCCCcceEEEEe--cCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCC
Q 048801 319 PI--------SVLRGHTGAVTAIAFSPRPSAIYQLLSS--SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 319 ~l--------~~L~gH~~~VtsLafSPdg~~~~~LaSg--S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
.. ..+..|.++|.+++|++++. +|+++ +.++.+.+|++.+++.+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 155 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPISDISWDFEGR---RLCVVGEGRDNFGVFISWDSGNSLGEV-------------------- 155 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSS---EEEEEECCSSCSEEEEETTTCCEEEEC--------------------
T ss_pred ceeeeecccccccccccCcEEEEEECCCCC---ccceeeccccceEEEEeecccccceee--------------------
Confidence 32 23456889999999999987 55544 45788999999877654432
Q ss_pred CCCCCCCCCcceeEEEEccCCCe-EEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccc
Q 048801 389 PSSSNGLQSHQILCCAYNANGTV-FVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAM 467 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafSpdG~~-LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~ 467 (1715)
..|...|.+++|+|++.+ +++++.|+.|++|++...+. .........|...|.+++|+|+.
T Consensus 156 -----~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~------~~~~~~~~~~~~~v~~v~~~pd~------- 217 (325)
T d1pgua1 156 -----SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF------SASDRTHHKQGSFVRDVEFSPDS------- 217 (325)
T ss_dssp -----CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE------EEEECSSSCTTCCEEEEEECSTT-------
T ss_pred -----eecccccccccccccccceEEEeeccccccccccccccc------ceecccccCCCCccEEeeecccc-------
Confidence 235677999999999875 67899999999999875432 22334456788899999999975
Q ss_pred cccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCC
Q 048801 468 SDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG 547 (1715)
Q Consensus 468 ~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~ 547 (1715)
..+|++++.||.|++||+++++.. ..+.+|...
T Consensus 218 ------------------~~~l~s~~~d~~i~iwd~~~~~~~-----------------------------~~l~~~~~~ 250 (325)
T d1pgua1 218 ------------------GEFVITVGSDRKISCFDGKSGEFL-----------------------------KYIEDDQEP 250 (325)
T ss_dssp ------------------CCEEEEEETTCCEEEEETTTCCEE-----------------------------EECCBTTBC
T ss_pred ------------------ceeccccccccceeeeeecccccc-----------------------------ccccccccc
Confidence 378999999999999999875422 223334444
Q ss_pred eeEEEeC---CCCCEEEEEecCCeEEEEECCCCceEEEEecCCCC--eEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 548 VNMIVWS---LDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSAS--SYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 548 VtslafS---PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~--V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
+..+.|+ ++|++|++++.|+.|+|||+.+++++..+..|... +..+++.+.++.+|++|+.||.|+|||+
T Consensus 251 v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 251 VQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp CCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred cccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 4444444 68999999999999999999999999998876554 3444554434557889999999999996
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.3e-27 Score=264.27 Aligned_cols=278 Identities=23% Similarity=0.362 Sum_probs=224.8
Q ss_pred EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEE
Q 048801 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356 (1715)
Q Consensus 277 ~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrI 356 (1715)
.+.....|...|+|++| ||++||||+.||+|+|||+.+++++.++.+|.+.|++|+|.+ . +|++|+.||.|++
T Consensus 7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~--~---~l~s~s~D~~i~~ 79 (293)
T d1p22a2 7 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE--R---VIITGSSDSTVRV 79 (293)
T ss_dssp CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCS--S---EEEEEETTSCEEE
T ss_pred EEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeeccc--c---eeecccccccccc
Confidence 34556678899998765 799999999999999999999999999999999999999853 4 8999999999999
Q ss_pred EecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCC
Q 048801 357 WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQ 436 (1715)
Q Consensus 357 WDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~ 436 (1715)
|++..+........ .......+.+....++++..++.+.+|+......
T Consensus 80 ~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 127 (293)
T d1p22a2 80 WDVNTGEMLNTLIH---------------------------HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD----- 127 (293)
T ss_dssp EESSSCCEEEEECC---------------------------CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC-----
T ss_pred cccccccccccccc---------------------------cccccccccccccceeecccccceeEeecccccc-----
Confidence 99988765433221 1123344556667889999999999999976432
Q ss_pred CceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccc
Q 048801 437 PIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWT 516 (1715)
Q Consensus 437 ~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~ 516 (1715)
......+..|...|..+.+.+ ..+++++.|+.|++||+.+++.
T Consensus 128 -~~~~~~~~~~~~~v~~~~~~~----------------------------~~~~~~s~d~~i~~~d~~~~~~-------- 170 (293)
T d1p22a2 128 -ITLRRVLVGHRAAVNVVDFDD----------------------------KYIVSASGDRTIKVWNTSTCEF-------- 170 (293)
T ss_dssp -CEEEEEECCCSSCEEEEEEET----------------------------TEEEEEETTSEEEEEETTTCCE--------
T ss_pred -ccccccccccccccccceecc----------------------------cccccccCCCceeeecCCCCcE--------
Confidence 344556778888888887765 4788999999999999986442
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEc
Q 048801 517 RAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVH 596 (1715)
Q Consensus 517 ~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafS 596 (1715)
+..+.++...|..+.+ ++.+|++++.||.|+|||+.++..+..+.+|...+..+.
T Consensus 171 ---------------------~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~-- 225 (293)
T d1p22a2 171 ---------------------VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR-- 225 (293)
T ss_dssp ---------------------EEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE--
T ss_pred ---------------------EEEEcccccccccccC--CCCeEEEecCCCEEEEEecccceeeeeecccceeeeecc--
Confidence 2234445556766666 467899999999999999999999999999999887654
Q ss_pred cCCCcEEEEEeCCCcEEEEECCC---------CceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 597 PFNPRIAMSAGYDGRTIVWDIWE---------GTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 597 P~dg~lLaSgs~DGtI~VWDl~t---------gk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
+ ++.+|++|+.||.|+|||+.. ..++..+.+|.+.|.+++| |+.+||+|+.||.|+|||
T Consensus 226 ~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 226 F-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp C-CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred c-cceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence 3 567899999999999999743 4578889999999999998 567899999999999997
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=8.3e-28 Score=282.84 Aligned_cols=294 Identities=16% Similarity=0.213 Sum_probs=225.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCC-eeEEEECCCC--CceEEEeCCC-CCeEEEEecCCCCcceEEEEecCCCcEEEEecCC
Q 048801 286 GDITDLAVSSNNTLVASASNDF-VIRVWRLPDG--LPISVLRGHT-GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY 361 (1715)
Q Consensus 286 ~~VtsLafSpDg~lLASGS~DG-tIrVWDl~tg--~~l~~L~gH~-~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t 361 (1715)
+.+++++|+|++..||.++.+. .|+.|+.... ..+..+.+|. ..|++++|+|..... +|++|+.||+|+|||+..
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~-~lasgs~Dg~i~iWd~~~ 96 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTF 96 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCC-EEEEEeCCCCEEEeeecC
Confidence 3567899999999999887654 3556665433 4567788875 679999999854322 899999999999999987
Q ss_pred CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC--CCeEEEEeCCCCCccCCCCCce
Q 048801 362 SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS--DTFARVWSACKSSVEDSEQPIH 439 (1715)
Q Consensus 362 g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~--DG~IrVWDl~t~~~~~~~~~~~ 439 (1715)
+.....+.... ......+...|.+++|+++|.+|++++. ++.+.+|+..++ .
T Consensus 97 ~~~~~~~~~~~-----------------~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~---------~ 150 (325)
T d1pgua1 97 DKESNSVEVNV-----------------KSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG---------N 150 (325)
T ss_dssp EGGGTEEEEEE-----------------EEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC---------C
T ss_pred Ccceeeeeccc-----------------ccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccc---------c
Confidence 66544332110 0011234667999999999999887654 678999998764 3
Q ss_pred eeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccc
Q 048801 440 ELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAY 519 (1715)
Q Consensus 440 ~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~ 519 (1715)
.+..+.+|...|.+++|+|++ ...+++++.||.|++|++.+.+....
T Consensus 151 ~~~~~~~h~~~v~~~~~~~~~-------------------------~~~~~~~~~d~~v~~~d~~~~~~~~~-------- 197 (325)
T d1pgua1 151 SLGEVSGHSQRINACHLKQSR-------------------------PMRSMTVGDDGSVVFYQGPPFKFSAS-------- 197 (325)
T ss_dssp EEEECCSCSSCEEEEEECSSS-------------------------SCEEEEEETTTEEEEEETTTBEEEEE--------
T ss_pred cceeeeecccccccccccccc-------------------------cceEEEeeccccccccccccccccee--------
Confidence 467788999999999999976 34688999999999999875431111
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC-CCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEc--
Q 048801 520 HLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD-NRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVH-- 596 (1715)
Q Consensus 520 ~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD-G~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafS-- 596 (1715)
......|...|.+++|+|+ +.+|++|+.|+.|++||+.+++.+..+.+|...+.++.|+
T Consensus 198 ------------------~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~ 259 (325)
T d1pgua1 198 ------------------DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS 259 (325)
T ss_dssp ------------------ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEE
T ss_pred ------------------cccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeee
Confidence 1123456778999999996 6899999999999999999999999999998877655554
Q ss_pred -cCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccce--EE--EEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 597 -PFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFK--LV--DGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 597 -P~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~--V~--svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
| ++.+|++++.||.|+|||+.+++++..+..+... +. ++.|.++ .+|++++.||.|+|||+
T Consensus 260 ~~-dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 260 WL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL 325 (325)
T ss_dssp ES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred cc-CCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence 4 5788999999999999999999999998865543 33 3444444 47889999999999996
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.2e-27 Score=273.65 Aligned_cols=272 Identities=16% Similarity=0.202 Sum_probs=215.0
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
.+++++|.||..+|++|+|+| |+||+.||+|++||+.++ ..+|...|.+++|++++ .+++++.|++|++|
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w 72 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN 72 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeeccccccc
Confidence 468899999999999999987 999999999999998764 36899999999998765 67899999999999
Q ss_pred ECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCC
Q 048801 313 RLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392 (1715)
Q Consensus 313 Dl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~ 392 (1715)
++.... ....+.++++.+++. ++..+.++.+.+|+..++..+..+..
T Consensus 73 ~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 119 (287)
T d1pgua2 73 GITKHE-------FGSQPKVASANNDGF----TAVLTNDDDLLILQSFTGDIIKSVRL---------------------- 119 (287)
T ss_dssp TEEEEE-------CSSCEEEEEECSSSE----EEEEETTSEEEEEETTTCCEEEEEEC----------------------
T ss_pred cccccc-------cccceeeeeeccCCc----eEEEeecccceeeeccceeeeeeccc----------------------
Confidence 975321 345678889998874 44455667788999887776544422
Q ss_pred CCCCCcceeEEEEccCCCeEEEecCCC-eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccc
Q 048801 393 NGLQSHQILCCAYNANGTVFVTGSSDT-FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471 (1715)
Q Consensus 393 ~~~h~~~VtslafSpdG~~LatGs~DG-~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~ 471 (1715)
. ..+.++++++..+++++.++ .|++|++.... ........|...|.+++|+|++
T Consensus 120 ----~--~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~--------~~~~~~~~~~~~v~~~~~s~~~----------- 174 (287)
T d1pgua2 120 ----N--SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE--------VSFDLKTPLRAKPSYISISPSE----------- 174 (287)
T ss_dssp ----S--SCEEEEEECSSEEEEEETTTSCEEEEETTEEE--------EEEECSSCCSSCEEEEEECTTS-----------
T ss_pred ----c--ceeeeeeccCcceeeeccccceeeeeeccccc--------eeeeeeeccCCceeEEEeccCc-----------
Confidence 1 23456777888888877765 79999986432 1223334577899999999986
Q ss_pred cccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEE
Q 048801 472 KEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMI 551 (1715)
Q Consensus 472 ~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsl 551 (1715)
.+|++|+.||.|++||+.++... ...+..|...|+++
T Consensus 175 ---------------~~l~~g~~dg~i~i~d~~~~~~~----------------------------~~~~~~h~~~v~~~ 211 (287)
T d1pgua2 175 ---------------TYIAAGDVMGKILLYDLQSREVK----------------------------TSRWAFRTSKINAI 211 (287)
T ss_dssp ---------------SEEEEEETTSCEEEEETTTTEEE----------------------------ECCSCCCSSCEEEE
T ss_pred ---------------cccccccccccccceeecccccc----------------------------ccccccccccccee
Confidence 79999999999999999864311 11234577889999
Q ss_pred EeCCC----------CCEEEEEecCCeEEEEECCC-CceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 552 VWSLD----------NRFVLAAIMDCRICVWNAVD-GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 552 afSPD----------G~~LaTgs~DGtI~IWDl~s-g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
+|+|. +.+|++|+.|++|+|||+.+ ++.+..+.+|...|++++|+| ++ .|+|++.||+|+||++
T Consensus 212 ~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 212 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred eecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC-CC-EEEEEECCCeEEEEEE
Confidence 99874 56899999999999999977 567778889999999999999 54 4778999999999996
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.8e-27 Score=270.52 Aligned_cols=272 Identities=13% Similarity=0.112 Sum_probs=213.9
Q ss_pred CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcE
Q 048801 275 AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtV 354 (1715)
.+++++|.||..+|++|+|+| |+||+.||+|++||+.++ ..+|...|.+++|+++. .+++++.|++|
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~----~~~s~s~D~~v 69 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ----EYSSISWDDTL 69 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT----CCEEEETTTEE
T ss_pred cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC----eEEEEeecccc
Confidence 478899999999999999987 999999999999998754 45899999999999875 57999999999
Q ss_pred EEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCC
Q 048801 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDS 434 (1715)
Q Consensus 355 rIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~ 434 (1715)
++|++...+. ...+.++++++++..+++++ ++.+.+|+..++.
T Consensus 70 ~~w~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---- 112 (287)
T d1pgua2 70 KVNGITKHEF--------------------------------GSQPKVASANNDGFTAVLTN-DDDLLILQSFTGD---- 112 (287)
T ss_dssp EETTEEEEEC--------------------------------SSCEEEEEECSSSEEEEEET-TSEEEEEETTTCC----
T ss_pred cccccccccc--------------------------------ccceeeeeeccCCceEEEee-cccceeeecccee----
Confidence 9999864321 23477899999988877765 5567888887643
Q ss_pred CCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC-CeEEEEecCCCccCcccc
Q 048801 435 EQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD-GSAIIWIPRSRRSHGKVG 513 (1715)
Q Consensus 435 ~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D-GsIrIWDl~t~~~~~~~~ 513 (1715)
.+..+..+ ..+. ++++++ ..+++++.+ +.+++|++......
T Consensus 113 -----~~~~~~~~-~~~~--~~~~~~--------------------------~~~~v~~~~~~~v~~~~~~~~~~~---- 154 (287)
T d1pgua2 113 -----IIKSVRLN-SPGS--AVSLSQ--------------------------NYVAVGLEEGNTIQVFKLSDLEVS---- 154 (287)
T ss_dssp -----EEEEEECS-SCEE--EEEECS--------------------------SEEEEEETTTSCEEEEETTEEEEE----
T ss_pred -----eeeecccc-ceee--eeeccC--------------------------cceeeeccccceeeeeecccccee----
Confidence 23333322 2333 344443 455555554 57999998642210
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEE-EEecCCCCeEE
Q 048801 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVH-SLTGHSASSYV 592 (1715)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~-tL~gH~~~V~s 592 (1715)
......+...+++++|+|++.+|++|+.||.|++||+.++.... .+.+|...|.+
T Consensus 155 ------------------------~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~ 210 (287)
T d1pgua2 155 ------------------------FDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINA 210 (287)
T ss_dssp ------------------------EECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEE
T ss_pred ------------------------eeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccce
Confidence 01122356679999999999999999999999999999988765 46789999999
Q ss_pred EEEccC---------CCcEEEEEeCCCcEEEEECCC-CceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 593 LDVHPF---------NPRIAMSAGYDGRTIVWDIWE-GTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 593 LafSP~---------dg~lLaSgs~DGtI~VWDl~t-gk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
++|+|. ++.+|++|+.||+|+|||+.+ ++.+..+.+|...|.+++|+|++ .|++++.||.|++|++
T Consensus 211 ~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred eeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 999883 346899999999999999977 56777777899999999999987 5889999999999986
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.6e-26 Score=278.62 Aligned_cols=303 Identities=15% Similarity=0.162 Sum_probs=219.3
Q ss_pred EEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCc------eEEEeCCCCCeEEEEec---C-CCCcceEEEEe
Q 048801 279 ASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP------ISVLRGHTGAVTAIAFS---P-RPSAIYQLLSS 348 (1715)
Q Consensus 279 ~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~------l~~L~gH~~~VtsLafS---P-dg~~~~~LaSg 348 (1715)
...++|.+.|.++++++ ++|+||+.|++|+|||..+... ......|...+..+.+. + .+....+++++
T Consensus 8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence 45679999999999864 6999999999999999866532 33334455554333321 1 22222367899
Q ss_pred cCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC-----CCeEEEecCCCeEEE
Q 048801 349 SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN-----GTVFVTGSSDTFARV 423 (1715)
Q Consensus 349 S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd-----G~~LatGs~DG~IrV 423 (1715)
+.||.|++|++........+.... ........+...+..++|.++ +.++++++.||.+++
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~v 150 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEK---------------LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI 150 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEE---------------ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred eCCCcEEEEEccCCCceeeeeccc---------------cceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEE
Confidence 999999999987655432221100 001112234556778888765 468899999999999
Q ss_pred EeCCCCCccC-----CCCC----ceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC
Q 048801 424 WSACKSSVED-----SEQP----IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR 494 (1715)
Q Consensus 424 WDl~t~~~~~-----~~~~----~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~ 494 (1715)
|++....... .... .........+...+.+++|+|++ +|++|+.
T Consensus 151 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg---------------------------~lasgs~ 203 (393)
T d1sq9a_ 151 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG---------------------------LIATGFN 203 (393)
T ss_dssp EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---------------------------EEEEECT
T ss_pred EEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC---------------------------EEEEEeC
Confidence 9985432100 0000 11122334456678899999864 8999999
Q ss_pred CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC---eEEE
Q 048801 495 DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC---RICV 571 (1715)
Q Consensus 495 DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG---tI~I 571 (1715)
||+|+|||+.+++..... .....+.+|...|++++|+|+|++|++|+.|+ .|+|
T Consensus 204 Dg~i~iwd~~~~~~~~~~-----------------------~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~l 260 (393)
T d1sq9a_ 204 NGTVQISELSTLRPLYNF-----------------------ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL 260 (393)
T ss_dssp TSEEEEEETTTTEEEEEE-----------------------ECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEE
T ss_pred CCcEEEEeeccccccccc-----------------------ccccccccccceEEEcccccccceeeeecCCCCcceeee
Confidence 999999999875532211 11234567889999999999999999999987 4999
Q ss_pred EECCCCceEEEEe-------------cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEE----
Q 048801 572 WNAVDGSLVHSLT-------------GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLV---- 634 (1715)
Q Consensus 572 WDl~sg~~l~tL~-------------gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~---- 634 (1715)
||+.+++++..+. +|.+.|++|+|+| ++++|+||+.||+|+|||+.+|+++.++.+|...|.
T Consensus 261 wd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~ 339 (393)
T d1sq9a_ 261 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED 339 (393)
T ss_dssp EETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGG
T ss_pred cccccceeeeeeccccccccceeeeecccCceeeeccCC-CCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCcc
Confidence 9999999888774 7999999999999 788999999999999999999999999999988775
Q ss_pred EEEEcCCCCEEEEEe
Q 048801 635 DGKFSPDGTSIVLSD 649 (1715)
Q Consensus 635 svafSPDG~~LAsgs 649 (1715)
.++|+|+|..+++++
T Consensus 340 ~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 340 ILAVDEHGDSLAEPG 354 (393)
T ss_dssp CCCBCTTSCBCSSCC
T ss_pred EEEECCCCCEEEEcc
Confidence 478999999887554
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.95 E-value=3.9e-27 Score=275.44 Aligned_cols=334 Identities=13% Similarity=0.057 Sum_probs=248.8
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCC--eeEEEECCCCCceEEEe
Q 048801 248 CAIFDR-SGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDF--VIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 248 ~VafSp-DG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DG--tIrVWDl~tg~~l~~L~ 324 (1715)
.-.||| ||++||+++. |.|+|||+.++..++. +|...|.+++|+|||++|++++.+. .|++||+.++. +..+.
T Consensus 7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-~~~~~ 82 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-AEKFE 82 (360)
T ss_dssp EEEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-EEECC
T ss_pred cccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc-EEEee
Confidence 356999 9999999874 7999999998887653 6999999999999999998876653 79999998776 45677
Q ss_pred CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEE
Q 048801 325 GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCA 404 (1715)
Q Consensus 325 gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsla 404 (1715)
.|...|.+++|+|++. +|++++.++.+++|++.+++....+. .+...+.+++
T Consensus 83 ~~~~~v~~~~~spdg~---~l~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~ 134 (360)
T d1k32a3 83 ENLGNVFAMGVDRNGK---FAVVANDRFEIMTVDLETGKPTVIER-------------------------SREAMITDFT 134 (360)
T ss_dssp CCCCSEEEEEECTTSS---EEEEEETTSEEEEEETTTCCEEEEEE-------------------------CSSSCCCCEE
T ss_pred CCCceEEeeeeccccc---ccceeccccccccccccccceeeeee-------------------------cccccccchh
Confidence 8999999999999998 89999999999999998877544332 2344578899
Q ss_pred EccCCCeEEEe----------cCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccc
Q 048801 405 YNANGTVFVTG----------SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEE 474 (1715)
Q Consensus 405 fSpdG~~LatG----------s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~ 474 (1715)
|+|+|++|+.+ ..++.+++|++.++. ...+..|...+..++|+|++
T Consensus 135 ~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~----------~~~~~~~~~~~~~~~~spdg-------------- 190 (360)
T d1k32a3 135 ISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----------IFAATTENSHDYAPAFDADS-------------- 190 (360)
T ss_dssp ECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE----------EEECSCSSSBEEEEEECTTS--------------
T ss_pred hccceeeeeeeccccccceeeccccceeeeccccCc----------eeeecccccccccccccCCC--------------
Confidence 99999999854 345679999997642 33455677788999999987
Q ss_pred ccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC
Q 048801 475 NVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS 554 (1715)
Q Consensus 475 ~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS 554 (1715)
+.|++++.++.+.+|+.......... ......+..+...+..+.|+
T Consensus 191 ------------~~l~~~s~~~~~~~~d~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~s 236 (360)
T d1k32a3 191 ------------KNLYYLSYRSLDPSPDRVVLNFSFEV----------------------VSKPFVIPLIPGSPNPTKLV 236 (360)
T ss_dssp ------------CEEEEEESCCCCCEECSSSSCEECCS----------------------CBEEEEEESSTTCCCGGGCC
T ss_pred ------------CEEEEEeCCCceEcccccccceeecc----------------------ccceEEEecccCccccceEC
Confidence 78999999999999987643211000 00111122334445556777
Q ss_pred CCCCEEEEEecCC-----eEEEEECCCCceEEEEecCCCCeEEEEEccCCC--cEEEEEeCCCcEEEEECCCCceEEEEE
Q 048801 555 LDNRFVLAAIMDC-----RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP--RIAMSAGYDGRTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 555 PDG~~LaTgs~DG-----tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg--~lLaSgs~DGtI~VWDl~tgk~l~tl~ 627 (1715)
+++..++++..+. .+..+++..+. ...+..+.+.+..+.+.+.+. .++++++.++.|++||+.+++...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--- 312 (360)
T d1k32a3 237 PRSMTSEAGEYDLNDMYKRSSPINVDPGD-YRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE--- 312 (360)
T ss_dssp CGGGSCCCCCCCCTTGGGGCEECSCCCBC-EEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE---
T ss_pred CCcCcccccceeecccccceeecccCcCc-eeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE---
Confidence 8877776654432 23334444443 344555666666676665333 467788899999999998876532
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccccceeecCCCccEE
Q 048801 628 IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKYDQFFLGDYRPLI 682 (1715)
Q Consensus 628 ~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~~~~~~fs~D~r~L~ 682 (1715)
+.+.|.+++|||||++|++++.||.|++|++..|+.. ..+..|++||+
T Consensus 313 -~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~------~~~~~d~~~~~ 360 (360)
T d1k32a3 313 -VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE------RTVETDKRPLV 360 (360)
T ss_dssp -EEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSC------EECCCCSSCEE
T ss_pred -ecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcc------eEEEecccccC
Confidence 3456899999999999999999999999999988643 34556888774
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.4e-26 Score=264.98 Aligned_cols=299 Identities=10% Similarity=0.037 Sum_probs=218.9
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE---eCCCCCeEEEEecCCCCcceEEEEecCCC
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL---RGHTGAVTAIAFSPRPSAIYQLLSSSDDG 352 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L---~gH~~~VtsLafSPdg~~~~~LaSgS~DG 352 (1715)
+.++.+++|...|++|+|+|++++||+|+.||+|+|||+.++.....+ .+|.+.|++++|+|++.. +|++|+.||
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~--~l~sg~~d~ 79 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL--QIYVGTVQG 79 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE--EEEEEETTS
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC--EEEEccccc
Confidence 567778899999999999999999999999999999999877654333 369999999999997653 799999999
Q ss_pred cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCcc
Q 048801 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVE 432 (1715)
Q Consensus 353 tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~ 432 (1715)
.|++|++..+........ .+........+.+++..+++++.++.+++||++....
T Consensus 80 ~v~~w~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~- 134 (342)
T d1yfqa_ 80 EILKVDLIGSPSFQALTN------------------------NEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD- 134 (342)
T ss_dssp CEEEECSSSSSSEEECBS------------------------CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT-
T ss_pred ceeeeecccccccccccc------------------------cccccccccccccccccccccccccccceeecccccc-
Confidence 999999987654433211 1122345566677888999999999999999865322
Q ss_pred CCCCCceeeeeecCCC--CCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 433 DSEQPIHELDVLSGHE--NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 433 ~~~~~~~~l~~l~gH~--~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
..........+. .....+.+.+. ...+++++.||.|++|++.......
T Consensus 135 ----~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~d~~i~~~~~~~~~~~~ 184 (342)
T d1yfqa_ 135 ----GVIAVKNLNSNNTKVKNKIFTMDTN--------------------------SSRLIVGMNNSQVQWFRLPLCEDDN 184 (342)
T ss_dssp ----BCEEEEESCSSSSSSCCCEEEEEEC--------------------------SSEEEEEESTTEEEEEESSCCTTCC
T ss_pred ----ceeeecccccccccceeeeeeeecc--------------------------CCceeeecCCCcEEEEecccCcccc
Confidence 111122222222 22333344443 2689999999999999998644221
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe-CCCCCEEEEEecCCeEEEEECCCCceE------EE-
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW-SLDNRFVLAAIMDCRICVWNAVDGSLV------HS- 582 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf-SPDG~~LaTgs~DGtI~IWDl~sg~~l------~t- 582 (1715)
.. .........+.++.+ +.++..+++++.||.+.+|++...... ..
T Consensus 185 ~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~ 238 (342)
T d1yfqa_ 185 GT--------------------------IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp CE--------------------------EEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred ee--------------------------eeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccccee
Confidence 11 111222334444444 457789999999999999998653211 11
Q ss_pred --------EecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeE
Q 048801 583 --------LTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQI 654 (1715)
Q Consensus 583 --------L~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I 654 (1715)
..+|...|++|+|+| ++.+|+||+.||.|+|||+.+++++..+..+ ..+..++|+|+|++||+++.|+.+
T Consensus 239 ~~~~~~~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~ 316 (342)
T d1yfqa_ 239 RCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTF 316 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHH
T ss_pred eeeeeccCCCcccccceeEEecC-CccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcE
Confidence 135677899999999 6778999999999999999999999888643 345568899999999999998888
Q ss_pred EEEEC
Q 048801 655 YLLNT 659 (1715)
Q Consensus 655 ~IWdl 659 (1715)
++|..
T Consensus 317 ~~~~~ 321 (342)
T d1yfqa_ 317 KTNAA 321 (342)
T ss_dssp HHCSS
T ss_pred EEeee
Confidence 77764
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=4.7e-26 Score=274.46 Aligned_cols=313 Identities=13% Similarity=0.114 Sum_probs=213.0
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc------EEEEecCCCCCeEEEEEC------C-CCCEEEE
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF------CLASCRGHEGDITDLAVS------S-NNTLVAS 302 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk------~l~tL~gHs~~VtsLafS------p-Dg~lLAS 302 (1715)
....+||.+.|++|++++ ++|+|||.|++|+|||..+.. .......|...+..+.+. . ++.++++
T Consensus 7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (393)
T d1sq9a_ 7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 84 (393)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence 345689999999999874 699999999999999986543 223334465555444331 1 3457889
Q ss_pred EeCCCeeEEEECCCCCceEEE----------eCCCCCeEEEEecCCCCc--ceEEEEecCCCcEEEEecCCCCCcceecC
Q 048801 303 ASNDFVIRVWRLPDGLPISVL----------RGHTGAVTAIAFSPRPSA--IYQLLSSSDDGTCRIWDARYSQYSPRIYL 370 (1715)
Q Consensus 303 GS~DGtIrVWDl~tg~~l~~L----------~gH~~~VtsLafSPdg~~--~~~LaSgS~DGtVrIWDl~tg~~l~~i~~ 370 (1715)
++.||.|++|++........+ ..+...+..++|.++... ..++++++.||++++|++...........
T Consensus 85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~ 164 (393)
T d1sq9a_ 85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 164 (393)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence 999999999998654332211 124566788888876431 23789999999999999864332111100
Q ss_pred CCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCC
Q 048801 371 PKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEND 450 (1715)
Q Consensus 371 ~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~ 450 (1715)
........ ..........+...+.+++|+|++ +||+|+.||.|+|||+.+++... .......+.+|...
T Consensus 165 ~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~---~~~~~~~l~~h~~~ 233 (393)
T d1sq9a_ 165 LNWSPTLE-------LQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY---NFESQHSMINNSNS 233 (393)
T ss_dssp TCCCCEEE-------EEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEE---EEECCC---CCCCC
T ss_pred eeecccee-------cccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccc---ccccccccccccce
Confidence 00000000 000111223345568999999998 88999999999999998754311 12223456789999
Q ss_pred eeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC---eEEEEecCCCccCcccccccccccccCCCCC
Q 048801 451 VNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG---SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPP 527 (1715)
Q Consensus 451 V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG---sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~ 527 (1715)
|++|+|+|++ .+|++|+.|+ .|++||+.++.....+....
T Consensus 234 V~~l~~spdg--------------------------~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~----------- 276 (393)
T d1sq9a_ 234 IRSVKFSPQG--------------------------SLLAIAHDSNSFGCITLYETEFGERIGSLSVPT----------- 276 (393)
T ss_dssp EEEEEECSST--------------------------TEEEEEEEETTEEEEEEEETTTCCEEEEECBC------------
T ss_pred EEEccccccc--------------------------ceeeeecCCCCcceeeecccccceeeeeecccc-----------
Confidence 9999999987 7999999887 48999999876443321110
Q ss_pred CCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeE----EEEEccCCCcEE
Q 048801 528 LPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSY----VLDVHPFNPRIA 603 (1715)
Q Consensus 528 ~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~----sLafSP~dg~lL 603 (1715)
........+.+|...|++++|+|++++|++|+.|++|+|||+.+|+++.+|.+|.+.|. .++|+| ++..+
T Consensus 277 -----~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~-~~~~~ 350 (393)
T d1sq9a_ 277 -----HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE-HGDSL 350 (393)
T ss_dssp ------------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCT-TSCBC
T ss_pred -----ccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECC-CCCEE
Confidence 11223345668999999999999999999999999999999999999999999987765 366777 44444
Q ss_pred E
Q 048801 604 M 604 (1715)
Q Consensus 604 a 604 (1715)
+
T Consensus 351 ~ 351 (393)
T d1sq9a_ 351 A 351 (393)
T ss_dssp S
T ss_pred E
Confidence 3
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=4.4e-24 Score=260.61 Aligned_cols=350 Identities=11% Similarity=0.018 Sum_probs=240.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE-----eCCCCCe
Q 048801 256 RFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL-----RGHTGAV 330 (1715)
Q Consensus 256 ~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L-----~gH~~~V 330 (1715)
.++++++.||.|+|||+.+++++.++..|. .+..++|||||++|++++.|++|++||+.+++..... .+|.+.+
T Consensus 33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~ 111 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE 111 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence 356788899999999999999999999875 5999999999999999999999999999999865433 2566778
Q ss_pred EEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC
Q 048801 331 TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT 410 (1715)
Q Consensus 331 tsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~ 410 (1715)
.+++|+|+++. +++++..++.+.+||..++.....+...... .......+......+++++++.
T Consensus 112 ~s~~~spDG~~--l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~i~~s~d~~ 175 (426)
T d1hzua2 112 SSKFKGYEDRY--TIAGAYWPPQFAIMDGETLEPKQIVSTRGMT--------------VDTQTYHPEPRVAAIIASHEHP 175 (426)
T ss_dssp ECCSTTCTTTE--EEEEEEESSEEEEEETTTCCEEEEEECCEEC--------------SSSCCEESCCCEEEEEECSSSS
T ss_pred EeeeecCCCCE--EEEeecCCCeEEEEcCCccceeEEeeccCCC--------------ccceeecCCCceeEEEECCCCC
Confidence 88899999982 3466678999999999988766544321110 0011112344467788888888
Q ss_pred eEEEecC-CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceE
Q 048801 411 VFVTGSS-DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNI 489 (1715)
Q Consensus 411 ~LatGs~-DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~L 489 (1715)
.++.... .+.+.+++..... ........+...+..+.|+|++ ...+
T Consensus 176 ~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~g-------------------------~~~~ 222 (426)
T d1hzua2 176 EFIVNVKETGKVLLVNYKDID--------NLTVTSIGAAPFLADGGWDSSH-------------------------RYFM 222 (426)
T ss_dssp EEEEEETTTTEEEEEECSSSS--------SCEEEEEECCSSEEEEEECTTS-------------------------CEEE
T ss_pred EEEEecCCCCeEEEEEecccc--------ceeeEEeccCCccEeeeECCCC-------------------------cEEE
Confidence 7665543 4666677665432 1122334567788999999987 2455
Q ss_pred EEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeE
Q 048801 490 VTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRI 569 (1715)
Q Consensus 490 aSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI 569 (1715)
++...+..+.+|+..+++......... .............+...+....+++ |+.+
T Consensus 223 ~a~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~----------d~~v 278 (426)
T d1hzua2 223 TAANNSNKVAVIDSKDRRLSALVDVGK--------------TPHPGRGANFVHPKYGPVWSTSHLG----------DGSI 278 (426)
T ss_dssp EEETTCSEEEEEETTTTEEEEEEECSS--------------CCCCSCCEEEEETTTEEEEEEECTT----------TCEE
T ss_pred eeeecccceeeeecccccEEEEeccCC--------------cccccceeeeecCCCCceEEeccCC----------CceE
Confidence 666678889999998765332211000 0000011111112222333333333 4555
Q ss_pred EEEECC-------CCceEEEEecCCCCeEEEEEccCCCcEEE-------EEeCCCcEEEEECCCCceEEEEE--------
Q 048801 570 CVWNAV-------DGSLVHSLTGHSASSYVLDVHPFNPRIAM-------SAGYDGRTIVWDIWEGTPIRIYE-------- 627 (1715)
Q Consensus 570 ~IWDl~-------sg~~l~tL~gH~~~V~sLafSP~dg~lLa-------Sgs~DGtI~VWDl~tgk~l~tl~-------- 627 (1715)
.+|+.. .++....+.+|...+..++|+| ++++|+ +++.|++|+|||+.+++++.++.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~ 357 (426)
T d1hzua2 279 SLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADL 357 (426)
T ss_dssp EEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCT-TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCC
T ss_pred EEeeccccccccccceEeEEEecCCCceeEEEcCC-CCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhccc
Confidence 555543 3578899999999999999999 566666 35568899999999998876653
Q ss_pred -cccceEEEEEEcCCCCEEEEE-----eCCCeEEEEECCCCccccccccceeecCCCcc
Q 048801 628 -IGRFKLVDGKFSPDGTSIVLS-----DDVGQIYLLNTGQGESQKDAKYDQFFLGDYRP 680 (1715)
Q Consensus 628 -~h~~~V~svafSPDG~~LAsg-----s~DG~I~IWdl~tGe~~k~~~~~~~fs~D~r~ 680 (1715)
.+...|..++|||||++|+++ +.+|.|.|||..+++..........+.|+|..
T Consensus 358 ~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~~~tp~Gk~ 416 (426)
T d1hzua2 358 GEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTGKF 416 (426)
T ss_dssp CSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTTCCSEEEEE
T ss_pred CCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCCccCCCceE
Confidence 234568999999999987543 35789999999999876544444455566654
|
| >d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BEACH domain superfamily: BEACH domain family: BEACH domain domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.6e-26 Score=265.11 Aligned_cols=131 Identities=15% Similarity=0.171 Sum_probs=122.3
Q ss_pred cCcccCCchhhHHHHhhhhhhhhhcccccccccchhHHHHHHHHhhccCch----------------------hhHHHHH
Q 048801 15 LGKAPLKFSSTVQEMAQLEQQDMVANQVVEADVDLREVYFLIIHFLSSGPC----------------------QRTLGLL 72 (1715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~i~ElyfLi~~fL~~gp~----------------------~~~~~~L 72 (1715)
++...=-|.|+...|.+|.. +++|++|+|||||++++.|+|.+++ ...|+.+
T Consensus 148 fD~~~R~F~si~~~~~~~~~------~~~d~~EliPEFf~~Pe~f~n~n~~~~g~~~~g~~v~DV~LP~Wa~s~~~FV~~ 221 (304)
T d1t77a1 148 FDHADRTFSSISRAWRNSQR------DTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHI 221 (304)
T ss_dssp CCCTTTSCCBHHHHHHHHHH------CTTCCCCBCGGGGTCGGGGSCTTCCCCCBCTTSCBCSSCBCCTTCSSHHHHHHH
T ss_pred ccCCccccccHHHHHHHhcc------cccchhhcCchhhcChHhhhhccccccccccCCCcccccccCCccCCcHHHHHH
Confidence 55555678999999999988 8889999999999999999986632 2689999
Q ss_pred HHHHHhcCCCccccccc----cccCCCCCCCCCCCCCccccCcccccccCCCCChHHHHHHHHHHHhcCCCCCCCccCCC
Q 048801 73 WNELLEHQLLPRRYHAW----FSRSGVNSGNDNDDGISFPLSYNKLVERYPHIEWDHLVKLLRQLLLYKASPFHGRIGGI 148 (1715)
Q Consensus 73 ~ReALESeyVS~~LH~W----FGyKQrG~eAv~A~NVFh~LTYEG~Vdld~i~dp~~r~aie~QI~nFGQTP~QL~~~pH 148 (1715)
||+||||+|||++||+| |||||+|++|++|.|||||++|++.++++.+.|+..+.+++.++.+|||+|.|||.+||
T Consensus 222 ~R~aLES~~VS~~L~~WIDLiFG~kq~G~~A~~a~Nvf~p~~Y~~~~~~~~~~d~~~~~~~~~~~~~~Gq~P~QLF~~pH 301 (304)
T d1t77a1 222 NRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPH 301 (304)
T ss_dssp HHHHHHSHHHHTTHHHHHHHHTSTTSSHHHHHHHTCCBCGGGSTTSCCGGGCCSHHHHHHHHHHHHHHCCCCCCCCSSCC
T ss_pred HHHHHhchHHHhHhhhhHHhhhccccCCHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHCCCCchhhcCCCC
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 048801 149 APN 151 (1715)
Q Consensus 149 PPr 151 (1715)
|+|
T Consensus 302 P~R 304 (304)
T d1t77a1 302 PPR 304 (304)
T ss_dssp CCC
T ss_pred CCC
Confidence 986
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.91 E-value=1.1e-23 Score=245.93 Aligned_cols=302 Identities=10% Similarity=0.053 Sum_probs=212.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSDDR--LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL 318 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~DG--tIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~ 318 (1715)
+|...|++++|+|||++|++++.+. .|++||+.+++.. .+..|...|.+++|+|||++|++++.++.+++|++.++.
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 118 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK 118 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccc
Confidence 7999999999999999998876553 7999999987654 677899999999999999999999999999999999999
Q ss_pred ceEEEeCCCCCeEEEEecCCCCcceEEEE----------ecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCC
Q 048801 319 PISVLRGHTGAVTAIAFSPRPSAIYQLLS----------SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 319 ~l~~L~gH~~~VtsLafSPdg~~~~~LaS----------gS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
....+..|...+.+++|+|++. +|+. +..++.+++|++.+++....
T Consensus 119 ~~~~~~~~~~~~~~~~~spdg~---~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--------------------- 174 (360)
T d1k32a3 119 PTVIERSREAMITDFTISDNSR---FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA--------------------- 174 (360)
T ss_dssp EEEEEECSSSCCCCEEECTTSC---EEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC---------------------
T ss_pred eeeeeecccccccchhhcccee---eeeeeccccccceeeccccceeeeccccCceeee---------------------
Confidence 9999999999999999999998 5653 34456799999987653211
Q ss_pred CCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccc
Q 048801 389 PSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~ 468 (1715)
..+...+.+++|+|+|+.|++++.++.+.+|+......... .......+..|...+..+.|++++
T Consensus 175 -----~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~-------- 239 (360)
T d1k32a3 175 -----TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFE--VVSKPFVIPLIPGSPNPTKLVPRS-------- 239 (360)
T ss_dssp -----SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECC--SCBEEEEEESSTTCCCGGGCCCGG--------
T ss_pred -----cccccccccccccCCCCEEEEEeCCCceEcccccccceeec--cccceEEEecccCccccceECCCc--------
Confidence 12345578899999999999999999999999865322110 011122223333333333333332
Q ss_pred ccccccccccccCCcccCceEEEEcCCC---eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 469 DAFKEENVPKFKNSWFCHDNIVTCSRDG---SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 469 ~~~~~~~~~~~~~s~~~~~~LaSgS~DG---sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
..++++..+. ..++|.+.. .......+..+.
T Consensus 240 ------------------~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~ 273 (360)
T d1k32a3 240 ------------------MTSEAGEYDLNDMYKRSSPINV----------------------------DPGDYRMIIPLE 273 (360)
T ss_dssp ------------------GSCCCCCCCCTTGGGGCEECSC----------------------------CCBCEEEEEECS
T ss_pred ------------------Ccccccceeecccccceeeccc----------------------------CcCceeEeeecC
Confidence 1111111110 001111110 011112223334
Q ss_pred CCeeEEEeCCC---CCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce
Q 048801 546 RGVNMIVWSLD---NRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTP 622 (1715)
Q Consensus 546 ~~VtslafSPD---G~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~ 622 (1715)
..+..+.+... +.++++++.++.|++||+.+++.. .|.+.|.+++|+| |++.|++++.||.|++||+.+++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~Sp-DG~~l~~~~~Dg~i~v~d~~~~~~ 348 (360)
T d1k32a3 274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSA-DRKTVMVRKDDGKIYTFPLEKPED 348 (360)
T ss_dssp SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECT-TSCEEEEEETTSCEEEEESSCTTS
T ss_pred CCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECC-CCCEEEEEECCCeEEEEECCCCCc
Confidence 44455555443 446788889999999999887643 2345589999999 788889999999999999999988
Q ss_pred EEEEEcccceE
Q 048801 623 IRIYEIGRFKL 633 (1715)
Q Consensus 623 l~tl~~h~~~V 633 (1715)
..++..+..++
T Consensus 349 ~~~~~~d~~~~ 359 (360)
T d1k32a3 349 ERTVETDKRPL 359 (360)
T ss_dssp CEECCCCSSCE
T ss_pred ceEEEeccccc
Confidence 88776554443
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=1.5e-23 Score=257.58 Aligned_cols=352 Identities=13% Similarity=0.019 Sum_probs=250.4
Q ss_pred ccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcE--EEE---ecCCCCCeEEEEECCCCCEE-
Q 048801 227 STMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFC--LAS---CRGHEGDITDLAVSSNNTLV- 300 (1715)
Q Consensus 227 ~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~--l~t---L~gHs~~VtsLafSpDg~lL- 300 (1715)
.+...+.+.+.+|..|. .+..++|||||++|++++.||.|++||+.+++. +.. ..+|.+.+.+++|+|||++|
T Consensus 46 v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~ 124 (432)
T d1qksa2 46 LIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI 124 (432)
T ss_dssp EEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEE
T ss_pred EEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEE
Confidence 44567888999998884 699999999999999999999999999988763 233 34566777778889999976
Q ss_pred EEEeCCCeeEEEECCCCCceEEEeCC-----------CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceec
Q 048801 301 ASASNDFVIRVWRLPDGLPISVLRGH-----------TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIY 369 (1715)
Q Consensus 301 ASGS~DGtIrVWDl~tg~~l~~L~gH-----------~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~ 369 (1715)
++++.+++|+|||..+++++..+..| ......+.++|++.. .+++...++.|.+||..+.+......
T Consensus 125 vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~--~~vs~~~~~~i~~~d~~~~~~~~~~~ 202 (432)
T d1qksa2 125 AGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE--FIVNVKETGKILLVDYTDLNNLKTTE 202 (432)
T ss_dssp EEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE--EEEEETTTTEEEEEETTCSSEEEEEE
T ss_pred EEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCE--EEEEEccCCeEEEEEccCCCcceEEE
Confidence 67888999999999999998887654 345678899999873 56777889999999988765433222
Q ss_pred CCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-CCeEEEEeCCCCCccCCCCCceeeeeecCCC
Q 048801 370 LPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-DTFARVWSACKSSVEDSEQPIHELDVLSGHE 448 (1715)
Q Consensus 370 ~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~ 448 (1715)
++ +...+.+++|+|+|+++++++. ++.+.+++..+.+..... .......|.
T Consensus 203 i~------------------------~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~----~~g~~~~~~ 254 (432)
T d1qksa2 203 IS------------------------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE----DTGGQTPHP 254 (432)
T ss_dssp EE------------------------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE----ECSSSSBCC
T ss_pred Ec------------------------ccCccccceECCCCCEEEEeccccceEEEeecccceEEEEe----ccCcccccc
Confidence 11 1334789999999997776654 567888998764321000 000111122
Q ss_pred CCeeEEEEccCcccccccccccccccccccccCCcccCceEEEE-cCCCeEEEEecCCCccCcccccccccccccCCCCC
Q 048801 449 NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTC-SRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPP 527 (1715)
Q Consensus 449 ~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSg-S~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~ 527 (1715)
.......+...+ ...++. ..++.|.+|+.....
T Consensus 255 ~~~~~~~~~~~g--------------------------~~~~~~~lg~~~v~~~~~~~~~-------------------- 288 (432)
T d1qksa2 255 GRGANFVHPTFG--------------------------PVWATSHMGDDSVALIGTDPEG-------------------- 288 (432)
T ss_dssp TTCEEEEETTTE--------------------------EEEEEEBSSSSEEEEEECCTTT--------------------
T ss_pred CcccceecCCCC--------------------------ceecccccCCceEEeccccccc--------------------
Confidence 233333333222 223333 347889998765311
Q ss_pred CCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEe
Q 048801 528 LPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607 (1715)
Q Consensus 528 ~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs 607 (1715)
...+...+....+++++..+++++.+..+++|...+.. .|.....++++ | ++..+++++
T Consensus 289 -------------~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-p-Dg~~la~~s 347 (432)
T d1qksa2 289 -------------HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-F-DIKAMTGDG 347 (432)
T ss_dssp -------------CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-E-EGGGCCCSS
T ss_pred -------------ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC------CCCCeeeEEEE-E-echhhcccc
Confidence 22345568889999999999999999999999865542 24333344554 7 778889999
Q ss_pred CCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCccccccccceeecCCCc
Q 048801 608 YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSD-----DVGQIYLLNTGQGESQKDAKYDQFFLGDYR 679 (1715)
Q Consensus 608 ~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs-----~DG~I~IWdl~tGe~~k~~~~~~~fs~D~r 679 (1715)
.|+.+++|++.++..+ ..|...|..++|||||++|+++. .+|.|.|||..+++.++.......+.|+|.
T Consensus 348 ~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~~~~tp~G~ 421 (432)
T d1qksa2 348 SDPEFKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDERLVTPTGK 421 (432)
T ss_dssp SCCCEEEECHHHHHTC---CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTTCCSEEEE
T ss_pred cCCceEeccccccccc---CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCCCccCCCee
Confidence 9999999998665443 24667899999999999887653 478999999999987655444444555554
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.89 E-value=1.4e-22 Score=247.14 Aligned_cols=348 Identities=9% Similarity=-0.013 Sum_probs=234.7
Q ss_pred cCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEe-----cCCCCCeEEEEECCCCCE
Q 048801 225 KPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASC-----RGHEGDITDLAVSSNNTL 299 (1715)
Q Consensus 225 ~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL-----~gHs~~VtsLafSpDg~l 299 (1715)
...+...+.+.+.+|.+|. .+..++|||||++|++++.||+|++||+.+++..... .+|.+.+.+++|+|||++
T Consensus 44 v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~ 122 (426)
T d1hzua2 44 IALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY 122 (426)
T ss_dssp EEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE
T ss_pred EEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE
Confidence 3445667889999999885 5999999999999999999999999999998754332 356777788888999998
Q ss_pred EEEE-eCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCcc
Q 048801 300 VASA-SNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAIT 378 (1715)
Q Consensus 300 LASG-S~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~ 378 (1715)
|+++ ..+++|.+||..++.++..+.+|...+..++|.+++.. ..++++.|+...+|.......+..+......
T Consensus 123 l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~---- 196 (426)
T d1hzua2 123 TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV--AAIIASHEHPEFIVNVKETGKVLLVNYKDID---- 196 (426)
T ss_dssp EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE--EEEEECSSSSEEEEEETTTTEEEEEECSSSS----
T ss_pred EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCce--eEEEECCCCCEEEEecCCCCeEEEEEecccc----
Confidence 7554 57899999999999999988877766666666665542 3445555555555544332221111110000
Q ss_pred CccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEc
Q 048801 379 GKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS-SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS 457 (1715)
Q Consensus 379 g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs-~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafs 457 (1715)
........+...+..++|+|+|++++++. .+..+.+|+..+++.. .......+......+.+.
T Consensus 197 ---------~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 260 (426)
T d1hzua2 197 ---------NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS-------ALVDVGKTPHPGRGANFV 260 (426)
T ss_dssp ---------SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEE-------EEEECSSCCCCSCCEEEE
T ss_pred ---------ceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEE-------EEeccCCcccccceeeee
Confidence 00011123355688999999999777665 5667889998875421 111111222222233333
Q ss_pred cCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC
Q 048801 458 GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537 (1715)
Q Consensus 458 pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 537 (1715)
.... ..-..++.+.|+.+.+|+........ .....
T Consensus 261 ~~~~-----------------------~~~~~~~~~~d~~v~~~~~~~~~~~~----------------------~~~~~ 295 (426)
T d1hzua2 261 HPKY-----------------------GPVWSTSHLGDGSISLIGTDPKNHPQ----------------------YAWKK 295 (426)
T ss_dssp ETTT-----------------------EEEEEEECTTTCEEEEEECCTTTCTT----------------------TBTSE
T ss_pred cCCC-----------------------CceEEeccCCCceEEEeecccccccc----------------------ccceE
Confidence 2210 01233455678899998876432110 11223
Q ss_pred cccccCCCCCeeEEEeCCCCCEEEE-------EecCCeEEEEECCCCceEEEEe---------cCCCCeEEEEEccCCCc
Q 048801 538 RQRLLPTPRGVNMIVWSLDNRFVLA-------AIMDCRICVWNAVDGSLVHSLT---------GHSASSYVLDVHPFNPR 601 (1715)
Q Consensus 538 ~~~l~~h~~~VtslafSPDG~~LaT-------gs~DGtI~IWDl~sg~~l~tL~---------gH~~~V~sLafSP~dg~ 601 (1715)
...+.+|...+..++|+|||++|++ +..+++|+|||+.+++...++. .|...|.+++|||++.+
T Consensus 296 ~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~ 375 (426)
T d1hzua2 296 VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE 375 (426)
T ss_dssp EEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSE
T ss_pred eEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCE
Confidence 4556778889999999999999995 4567899999999998776653 45667999999995555
Q ss_pred EEEEE----eCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEE
Q 048801 602 IAMSA----GYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIV 646 (1715)
Q Consensus 602 lLaSg----s~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LA 646 (1715)
+++++ +.+|.|+|||..+++.+..+.++. .++|+|++.+
T Consensus 376 i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~ 418 (426)
T d1hzua2 376 VWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFNV 418 (426)
T ss_dssp EEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEEH
T ss_pred EEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEeE
Confidence 66664 357899999999999998887554 3467776643
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.87 E-value=8.3e-20 Score=207.37 Aligned_cols=277 Identities=10% Similarity=0.081 Sum_probs=211.5
Q ss_pred EEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEE-EEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecC
Q 048801 259 ITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVA-SASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP 337 (1715)
Q Consensus 259 aTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLA-SGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSP 337 (1715)
++++.|++|.|||+.+++.++++... ..+..++|+|||++|+ +++.++.|++||+.+++.+..+..|. .+..++|++
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~ 83 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSP 83 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECT
T ss_pred EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccc
Confidence 45678999999999999999998754 4578999999999875 66678999999999999999998765 468999999
Q ss_pred CCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEE-Eec
Q 048801 338 RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFV-TGS 416 (1715)
Q Consensus 338 dg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~La-tGs 416 (1715)
++.. .++++..++.+.+|+..+++....+.. ...+.+++|+|+|..++ ++.
T Consensus 84 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~dg~~~~~~~~ 135 (301)
T d1l0qa2 84 DGKQ--VYVTNMASSTLSVIDTTSNTVAGTVKT--------------------------GKSPLGLALSPDGKKLYVTNN 135 (301)
T ss_dssp TSSE--EEEEETTTTEEEEEETTTTEEEEEEEC--------------------------SSSEEEEEECTTSSEEEEEET
T ss_pred cccc--ccccccccceeeecccccceeeeeccc--------------------------cccceEEEeecCCCeeeeeec
Confidence 9873 566778889999999988775554422 23468899999998765 555
Q ss_pred CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC
Q 048801 417 SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG 496 (1715)
Q Consensus 417 ~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG 496 (1715)
.++.+.+|+..+.. .+..+.. ...+..+++++++ ...++++..++
T Consensus 136 ~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~~~-------------------------~~~~~~~~~~~ 180 (301)
T d1l0qa2 136 GDKTVSVINTVTKA---------VINTVSV-GRSPKGIAVTPDG-------------------------TKVYVANFDSM 180 (301)
T ss_dssp TTTEEEEEETTTTE---------EEEEEEC-CSSEEEEEECTTS-------------------------SEEEEEETTTT
T ss_pred cccceeeeeccccc---------eeeeccc-CCCceEEEeeccc-------------------------cceeeeccccc
Confidence 68889999997643 2333333 3457888999876 23444445557
Q ss_pred eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC---CeEEEEE
Q 048801 497 SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWN 573 (1715)
Q Consensus 497 sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D---GtI~IWD 573 (1715)
.+.+|+...... .........+..++|++++..+++++.+ +.|++||
T Consensus 181 ~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D 230 (301)
T d1l0qa2 181 SISVIDTVTNSV------------------------------IDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230 (301)
T ss_dssp EEEEEETTTTEE------------------------------EEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred ccccccccceee------------------------------eecccccCCcceeeccccccccccccccceeeeeeeee
Confidence 777777654221 1112233456789999999988776543 6899999
Q ss_pred CCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccc
Q 048801 574 AVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRF 631 (1715)
Q Consensus 574 l~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~ 631 (1715)
+.+++.+..+..+ ..+.+++|+|++.+++++++.|++|.|||+.+++.+.++..+..
T Consensus 231 ~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~vg~~ 287 (301)
T d1l0qa2 231 TGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKN 287 (301)
T ss_dssp TTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred cCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeCCCC
Confidence 9999999888754 45799999995555667888999999999999999999875543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.86 E-value=9.1e-21 Score=219.14 Aligned_cols=306 Identities=9% Similarity=-0.001 Sum_probs=217.3
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec-CCCCCeEEEEECCCCCEE-EEEeCCCeeEEEECCCCCceEEEeCC
Q 048801 249 AIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR-GHEGDITDLAVSSNNTLV-ASASNDFVIRVWRLPDGLPISVLRGH 326 (1715)
Q Consensus 249 VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~-gHs~~VtsLafSpDg~lL-ASGS~DGtIrVWDl~tg~~l~~L~gH 326 (1715)
++|++++++|++++.|+.|.|||+.+++++.++. .|...+.+++|+|||++| ++++.++.|.+||+.+++.+..+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 4789999999999999999999999999999987 456678999999999987 45567899999999999988877533
Q ss_pred C------CCeEEEEecCCCCcceEEEEec------------CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCC
Q 048801 327 T------GAVTAIAFSPRPSAIYQLLSSS------------DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 327 ~------~~VtsLafSPdg~~~~~LaSgS------------~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
. ..+..++|+|++. +|++++ .++.+.+|+..+++....+..
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~---~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------------ 140 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGK---EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT------------------ 140 (346)
T ss_dssp CSTTEEEECSSCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE------------------
T ss_pred ccccccCCceEEEEEecCCC---EEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEe------------------
Confidence 2 2356799999998 454443 477888898877654332211
Q ss_pred CCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccc
Q 048801 389 PSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~ 468 (1715)
......+..+.+++++.+++++ +.+.+|++.+++ .+..+..+. .+..+.++|++
T Consensus 141 -----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~-------- 194 (346)
T d1jmxb_ 141 -----FPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGK---------YTVALPLRN-WNRKGYSAPDV-------- 194 (346)
T ss_dssp -----EECCSSCCCEEECTTSCEEEES---SSEEEECTTTCC---------EEEEECSTT-CCCTTBCCCBC--------
T ss_pred -----eeccCceEEEEecCCCEEEEeC---CcceEEEccCCC---------EEEEEecCC-CccceEEeccc--------
Confidence 0112335567778888766654 458899987643 233333332 23334444543
Q ss_pred ccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCe
Q 048801 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548 (1715)
Q Consensus 469 ~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V 548 (1715)
...++.+..++.+.+++..
T Consensus 195 -----------------~~~~~~~~~~~~~~~~~~~-------------------------------------------- 213 (346)
T d1jmxb_ 195 -----------------LYFWPHQSPRHEFSMLYTI-------------------------------------------- 213 (346)
T ss_dssp -----------------CCCCCCCCTTCEEEEEEEE--------------------------------------------
T ss_pred -----------------cEEEEEecCCCceEeeeee--------------------------------------------
Confidence 1233344444555554332
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEECCCCceEEE-EecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE
Q 048801 549 NMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHS-LTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 549 tslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~t-L~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~ 627 (1715)
..+......++++..++.+.+|++.++..... +..|...+..+.+++++..++ .+. ++.|.+||+.+++.+..+.
T Consensus 214 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~v~d~~~~~~~~~~~ 289 (346)
T d1jmxb_ 214 --ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI-YGV-LNRLAKYDLKQRKLIKAAN 289 (346)
T ss_dssp --EEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEE-EEE-ESEEEEEETTTTEEEEEEE
T ss_pred --eeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEE-Eec-CCeEEEEECCCCcEEEEEc
Confidence 12233444556666778899999999886654 567888899999999666554 333 4679999999999999887
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccc
Q 048801 628 IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKD 667 (1715)
Q Consensus 628 ~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~ 667 (1715)
. ...+.+++|||||++|++++.||.|.|||+.+++.+..
T Consensus 290 ~-~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~ 328 (346)
T d1jmxb_ 290 L-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKN 328 (346)
T ss_dssp C-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred C-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEE
Confidence 4 44688999999999999999999999999999987753
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=3.3e-20 Score=213.52 Aligned_cols=295 Identities=11% Similarity=0.028 Sum_probs=208.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEecCC--CCCeEEEEECCCCCEE-EEEeCCCeeEEEECCCCCceEEEeCCCC----
Q 048801 256 RFVITGSDDRLVKIWSMETAFCLASCRGH--EGDITDLAVSSNNTLV-ASASNDFVIRVWRLPDGLPISVLRGHTG---- 328 (1715)
Q Consensus 256 ~~LaTGS~DGtIrIWDl~tgk~l~tL~gH--s~~VtsLafSpDg~lL-ASGS~DGtIrVWDl~tg~~l~~L~gH~~---- 328 (1715)
.||++++.|+.|.|||+.+++++.++..+ ...+.+++|+|||++| ++++.++.|.+||+.+++.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 48999999999999999999999988653 4567899999999987 5667899999999999999988876543
Q ss_pred -CeEEEEecCCCCcceEEEEec------------CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCC
Q 048801 329 -AVTAIAFSPRPSAIYQLLSSS------------DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL 395 (1715)
Q Consensus 329 -~VtsLafSPdg~~~~~LaSgS------------~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~ 395 (1715)
.+..++|+|++. +++++. .++.+.+||..++.....+..
T Consensus 82 ~~~~~v~~s~dg~---~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------------------------- 133 (337)
T d1pbyb_ 82 KSLFGAALSPDGK---TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA------------------------- 133 (337)
T ss_dssp ECTTCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-------------------------
T ss_pred cceeeEEEcCCCc---EEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-------------------------
Confidence 345789999998 555554 467788888887765544422
Q ss_pred CCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccc
Q 048801 396 QSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 396 h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
...+.+++|+++|+++++++. .+.+||..+++ ....+..+.. .....+.+++.
T Consensus 134 -~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~---------~~~~~~~~~~-~~~~~~~~~~~-------------- 186 (337)
T d1pbyb_ 134 -PRQITMLAWARDGSKLYGLGR--DLHVMDPEAGT---------LVEDKPIQSW-EAETYAQPDVL-------------- 186 (337)
T ss_dssp -CSSCCCEEECTTSSCEEEESS--SEEEEETTTTE---------EEEEECSTTT-TTTTBCCCBCC--------------
T ss_pred -cCCceEEEEcCCCCEEEEEcC--CcceeeeecCc---------EEEEeecCCc-cccceecCCcc--------------
Confidence 233678999999999998864 46789987643 2222222211 11111222210
Q ss_pred cccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC
Q 048801 476 VPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL 555 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP 555 (1715)
.....+...+.+.+++. ....
T Consensus 187 -----------~~~~~~~~~~~~~~~~~------------------------------------------------~~~~ 207 (337)
T d1pbyb_ 187 -----------AVWNQHESSGVMATPFY------------------------------------------------TARK 207 (337)
T ss_dssp -----------CCCCCCTTTTEEEEEEE------------------------------------------------EEBT
T ss_pred -----------eeeccccccceeeeeee------------------------------------------------eeee
Confidence 01111111222222111 1112
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEE-EecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEE
Q 048801 556 DNRFVLAAIMDCRICVWNAVDGSLVHS-LTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLV 634 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl~sg~~l~t-L~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~ 634 (1715)
+...+..+..++.+.+|+..++..... +..+...+..+.++| ++.+++++ ++.|++||+.+++.+..+. +...+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~ 283 (337)
T d1pbyb_ 208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYY 283 (337)
T ss_dssp TSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCC
T ss_pred ccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecc-cceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEE
Confidence 222223334466799999998886654 556778888999999 56666544 5899999999999999987 455788
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcccccc
Q 048801 635 DGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDA 668 (1715)
Q Consensus 635 svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~ 668 (1715)
+++|+|||++|++++.+|.|.|||+.+++.+...
T Consensus 284 ~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i 317 (337)
T d1pbyb_ 284 SVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp EEEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 9999999999999999999999999998866543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=7.5e-21 Score=233.22 Aligned_cols=346 Identities=7% Similarity=-0.115 Sum_probs=241.5
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE--EE---eCCC
Q 048801 253 RSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS--VL---RGHT 327 (1715)
Q Consensus 253 pDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~--~L---~gH~ 327 (1715)
++.-++++.+.||.|.|||+.+++++..+..|. .+..++|||||++|++++.|++|.+||+.+++... .+ .+|.
T Consensus 30 ~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~ 108 (432)
T d1qksa2 30 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR 108 (432)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred CCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC
Confidence 333456899999999999999999999998774 69999999999999999999999999999886433 22 3566
Q ss_pred CCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc
Q 048801 328 GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA 407 (1715)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp 407 (1715)
+.+.+++|+||++. ++++++.+++|++||..+++.+..+....... ......+......+.+++
T Consensus 109 ~~~~s~~~SpDG~~--l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~v~~s~ 172 (432)
T d1qksa2 109 SIETSKMEGWEDKY--AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY--------------DEQEYHPEPRVAAILASH 172 (432)
T ss_dssp EEEECCSTTCTTTE--EEEEEEETTEEEEEETTTCCEEEEEECCEECT--------------TTCCEESCCCEEEEEECS
T ss_pred CeEEecccCCCCCE--EEEEcCCCCeEEEEeCccccceeeeccCCccc--------------cceeccCCCceeEEEECC
Confidence 67777888999982 45788899999999999988766553321110 011122345577899999
Q ss_pred CCCeE-EEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccC
Q 048801 408 NGTVF-VTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCH 486 (1715)
Q Consensus 408 dG~~L-atGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~ 486 (1715)
+|..+ ++...++.|.+|+..+.+. ..+..+ .+...+..++|+|++ .
T Consensus 173 dg~~~~vs~~~~~~i~~~d~~~~~~-------~~~~~i-~~g~~~~~~~~spdg-------------------------~ 219 (432)
T d1qksa2 173 YRPEFIVNVKETGKILLVDYTDLNN-------LKTTEI-SAERFLHDGGLDGSH-------------------------R 219 (432)
T ss_dssp SSSEEEEEETTTTEEEEEETTCSSE-------EEEEEE-ECCSSEEEEEECTTS-------------------------C
T ss_pred CCCEEEEEEccCCeEEEEEccCCCc-------ceEEEE-cccCccccceECCCC-------------------------C
Confidence 99765 5566789999999876421 111122 344578899999997 2
Q ss_pred ceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe-c
Q 048801 487 DNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-M 565 (1715)
Q Consensus 487 ~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs-~ 565 (1715)
..++++..++.+.++|..+.+....... .....+........+...+...++.. .
T Consensus 220 ~~~va~~~~~~v~v~d~~~~~~~~~~~~------------------------g~~~~~~~~~~~~~~~~~g~~~~~~~lg 275 (432)
T d1qksa2 220 YFITAANARNKLVVIDTKEGKLVAIEDT------------------------GGQTPHPGRGANFVHPTFGPVWATSHMG 275 (432)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEEC------------------------SSSSBCCTTCEEEEETTTEEEEEEEBSS
T ss_pred EEEEeccccceEEEeecccceEEEEecc------------------------CccccccCcccceecCCCCceecccccC
Confidence 3455555677899999887543322110 00111233344455555555555543 3
Q ss_pred CCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEE
Q 048801 566 DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSI 645 (1715)
Q Consensus 566 DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~L 645 (1715)
++.|.+|+..... +..|...|....++| ++..+++++.++++++|...+... +......+++ ||++.|
T Consensus 276 ~~~v~~~~~~~~~----~~~~~~~v~~~~~~~-~g~~~~~~s~p~~~~lw~~~~~~~------~~~~~~sv~v-pDg~~l 343 (432)
T d1qksa2 276 DDSVALIGTDPEG----HPDNAWKILDSFPAL-GGGSLFIKTHPNSQYLYVDATLNP------EAEISGSVAV-FDIKAM 343 (432)
T ss_dssp SSEEEEEECCTTT----CTTTBTSEEEEEECS-CSCCCCEECCTTCSEEEEECTTCS------SHHHHTCEEE-EEGGGC
T ss_pred CceEEeccccccc----ccccccEEEEEEEcC-CCCeEEEEecCCccceeecccCCC------CCCeeeEEEE-Eechhh
Confidence 7889999876543 345677788999999 667777889999999998765432 2222234454 999999
Q ss_pred EEEeCCCeEEEEECCCCccccc---cccceeecCCCccEEEc
Q 048801 646 VLSDDVGQIYLLNTGQGESQKD---AKYDQFFLGDYRPLIRD 684 (1715)
Q Consensus 646 Asgs~DG~I~IWdl~tGe~~k~---~~~~~~fs~D~r~L~~d 684 (1715)
++++.|+.+++|++.++..+.. ......|++||+.|.+.
T Consensus 344 a~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S 385 (432)
T d1qksa2 344 TGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFS 385 (432)
T ss_dssp CCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEE
T ss_pred cccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEE
Confidence 9999999999999866543321 12345799999988544
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.85 E-value=1.2e-18 Score=197.59 Aligned_cols=272 Identities=13% Similarity=0.095 Sum_probs=206.3
Q ss_pred EEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCc
Q 048801 301 ASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGK 380 (1715)
Q Consensus 301 ASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~ 380 (1715)
++++.|++|.|||+.+++.+.++... ..+..++|+|+++. ++++++.++.|++||+.+++.+..+..
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~--l~v~~~~~~~i~v~d~~t~~~~~~~~~---------- 72 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTK--VYVANAHSNDVSIIDTATNNVIATVPA---------- 72 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSE--EEEEEGGGTEEEEEETTTTEEEEEEEC----------
T ss_pred EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCceeeeeec----------
Confidence 46678999999999999999988743 56789999999982 346778899999999998886655432
Q ss_pred cCCCCCCCCCCCCCCCCcceeEEEEccCCCeEE-EecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccC
Q 048801 381 SNVPSNNGPSSSNGLQSHQILCCAYNANGTVFV-TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGC 459 (1715)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~VtslafSpdG~~La-tGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspd 459 (1715)
...+..++|++++..++ ++..++.+.+|+..+++ ....+.. ...+.++.|+|+
T Consensus 73 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~d 126 (301)
T d1l0qa2 73 ----------------GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT---------VAGTVKT-GKSPLGLALSPD 126 (301)
T ss_dssp ----------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---------EEEEEEC-SSSEEEEEECTT
T ss_pred ----------------cccccccccccccccccccccccceeeecccccce---------eeeeccc-cccceEEEeecC
Confidence 22367899999998554 55677899999997642 3344443 346788999998
Q ss_pred cccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcc
Q 048801 460 AVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQ 539 (1715)
Q Consensus 460 g~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~ 539 (1715)
+ ...++++..++.+.+|+..+.....
T Consensus 127 g-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 152 (301)
T d1l0qa2 127 G-------------------------KKLYVTNNGDKTVSVINTVTKAVIN----------------------------- 152 (301)
T ss_dssp S-------------------------SEEEEEETTTTEEEEEETTTTEEEE-----------------------------
T ss_pred C-------------------------Ceeeeeeccccceeeeeccccceee-----------------------------
Confidence 7 3466778889999999988643221
Q ss_pred cccCCCCCeeEEEeCCCCCEEEEEecC-CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEE--eCCCcEEEEE
Q 048801 540 RLLPTPRGVNMIVWSLDNRFVLAAIMD-CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSA--GYDGRTIVWD 616 (1715)
Q Consensus 540 ~l~~h~~~VtslafSPDG~~LaTgs~D-GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSg--s~DGtI~VWD 616 (1715)
...+...+.++++++++..+++++.+ +.+.+|+....+....+..+ ..+..++|++++..+++++ ..++.|.+||
T Consensus 153 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D 230 (301)
T d1l0qa2 153 -TVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230 (301)
T ss_dssp -EEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred -ecccCCCceEEEeeccccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeee
Confidence 11233457889999999998887765 67778888877777776655 4467899999555554443 2357899999
Q ss_pred CCCCceEEEEEcccceEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCcccccc
Q 048801 617 IWEGTPIRIYEIGRFKLVDGKFSPDGTSIV-LSDDVGQIYLLNTGQGESQKDA 668 (1715)
Q Consensus 617 l~tgk~l~tl~~h~~~V~svafSPDG~~LA-sgs~DG~I~IWdl~tGe~~k~~ 668 (1715)
+.+++.+..+..+ ..+.+++|||||++|+ +++.++.|.|||+.+|+.+...
T Consensus 231 ~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~ 282 (301)
T d1l0qa2 231 TGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282 (301)
T ss_dssp TTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 9999999988754 4678999999999874 6677999999999999876544
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.82 E-value=4.4e-18 Score=200.72 Aligned_cols=322 Identities=9% Similarity=-0.066 Sum_probs=216.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEe----------
Q 048801 240 RGHRDAVYCAIFDRSGRFVITGS-----DDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASAS---------- 304 (1715)
Q Consensus 240 ~GH~~~Vt~VafSpDG~~LaTGS-----~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS---------- 304 (1715)
.+|.+++.+++++|||+.++... .++.|.+||..+++.+.++..+... .++|+|||++|++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence 46889999999999999987652 3467999999999999998877654 799999999999875
Q ss_pred CCCeeEEEECCCCCceEEEeCCCCCe-------EEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCc
Q 048801 305 NDFVIRVWRLPDGLPISVLRGHTGAV-------TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAI 377 (1715)
Q Consensus 305 ~DGtIrVWDl~tg~~l~~L~gH~~~V-------tsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i 377 (1715)
.++.|.|||+.+++++..+..+.... ..+.|+++++.. ++.....++.+.+|+....+....
T Consensus 95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~-~v~~~~~~~~~~~~~~~~~~~~~~---------- 163 (373)
T d2madh_ 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADL-LFFQFAAGPAVGLVVQGGSSDDQL---------- 163 (373)
T ss_pred cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcE-EEEEEcCCCceEEeeccCCeEEEE----------
Confidence 35789999999999998887666544 446778887642 334445567788888765543222
Q ss_pred cCccCCCCCCCCCCCCCCCCcceeEEEEccCCCe-EEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEE
Q 048801 378 TGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTV-FVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF 456 (1715)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~-LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLaf 456 (1715)
.....++.|+++|.. +++.+.|+.+.+|+........... ......++......+.+
T Consensus 164 -------------------~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 221 (373)
T d2madh_ 164 -------------------LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV---GAMLTAAQNLLTQPAQA 221 (373)
T ss_pred -------------------eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEe---eeccccCccceeeeEEE
Confidence 222568899999864 5678889999999997653211000 00000111112223334
Q ss_pred ccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCC
Q 048801 457 SGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536 (1715)
Q Consensus 457 spdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 536 (1715)
.++ ..++..+.++.+.+|+..+........ +. .. ..
T Consensus 222 ~~~---------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~----~~------------~~ 257 (373)
T d2madh_ 222 NKS---------------------------GRIVWPVYSGKILQADISAAGATNKAP-ID----AL------------SG 257 (373)
T ss_pred CCC---------------------------ceEEEecCCceEEEEEcCCCeEEEEEe-ec----cc------------cC
Confidence 333 466777889999999887643211100 00 00 00
Q ss_pred CcccccCCCCCeeEEEeCCCC----------CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCc-EEEE
Q 048801 537 PRQRLLPTPRGVNMIVWSLDN----------RFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPR-IAMS 605 (1715)
Q Consensus 537 ~~~~l~~h~~~VtslafSPDG----------~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~-lLaS 605 (1715)
..............+++++++ ..+++...++.|.+||+.+++.+..+. +...+.+++|+|++.. ++++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt 336 (373)
T d2madh_ 258 GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYAL 336 (373)
T ss_pred cEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEE
Confidence 000001111223334444444 445556677889999999999998875 5667899999995544 4578
Q ss_pred EeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCC
Q 048801 606 AGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPD 641 (1715)
Q Consensus 606 gs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPD 641 (1715)
++.|++|+|||+.+|+.++++..+......+++.++
T Consensus 337 ~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 337 SAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred eCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 899999999999999999999876666666666544
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.76 E-value=5.4e-17 Score=186.33 Aligned_cols=286 Identities=8% Similarity=-0.058 Sum_probs=200.2
Q ss_pred CccccccceeEEEEcCC--CCCeEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcEEEEecCCCC-----CeEEEEECCCC
Q 048801 226 PSTMVQKMQNIKKLRGH--RDAVYCAIFDRSGRFVI-TGSDDRLVKIWSMETAFCLASCRGHEG-----DITDLAVSSNN 297 (1715)
Q Consensus 226 ~~~~~~~~k~l~~L~GH--~~~Vt~VafSpDG~~La-TGS~DGtIrIWDl~tgk~l~tL~gHs~-----~VtsLafSpDg 297 (1715)
..+.+.+.+.++++..+ ...+.+++|+|||++|+ +++.++.|.+||+.+++.+..+..+.. .+..++|+|++
T Consensus 14 ~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg 93 (337)
T d1pbyb_ 14 VVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDG 93 (337)
T ss_dssp EEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTS
T ss_pred EEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCC
Confidence 34566777888888654 45688999999999874 667899999999999999998876644 34578999999
Q ss_pred CEEEEEe------------CCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCc
Q 048801 298 TLVASAS------------NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365 (1715)
Q Consensus 298 ~lLASGS------------~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l 365 (1715)
++++++. .++.+.+||..++..+..+.. ...+.+++|+|++. ++++++. .+.+||..+++..
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~---~l~~~~~--~~~~~d~~~~~~~ 167 (337)
T d1pbyb_ 94 KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGS---KLYGLGR--DLHVMDPEAGTLV 167 (337)
T ss_dssp SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSS---CEEEESS--SEEEEETTTTEEE
T ss_pred cEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCC---EEEEEcC--CcceeeeecCcEE
Confidence 9998876 357899999999998888874 45688999999998 6677654 4788999988776
Q ss_pred ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec
Q 048801 366 PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS 445 (1715)
Q Consensus 366 ~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~ 445 (1715)
..+............ .............+...+.......+...+..+..++.+.+|++.++.. ....+.
T Consensus 168 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 237 (337)
T d1pbyb_ 168 EDKPIQSWEAETYAQ--PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM--------AMREVR 237 (337)
T ss_dssp EEECSTTTTTTTBCC--CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE--------EEEEEE
T ss_pred EEeecCCccccceec--CCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcE--------EEEEec
Confidence 655443221111000 0000000011111112222333344455555666778899999977532 233445
Q ss_pred CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCC
Q 048801 446 GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPP 525 (1715)
Q Consensus 446 gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~ 525 (1715)
.+...+..+.+++++ ..++.+ ++.|++||+.+++....
T Consensus 238 ~~~~~~~~~~~~~~~--------------------------~~~~~~--~~~i~v~d~~~~~~~~~-------------- 275 (337)
T d1pbyb_ 238 IMDVFYFSTAVNPAK--------------------------TRAFGA--YNVLESFDLEKNASIKR-------------- 275 (337)
T ss_dssp ECSSCEEEEEECTTS--------------------------SEEEEE--ESEEEEEETTTTEEEEE--------------
T ss_pred CCCcceEEEEecccc--------------------------eEEEEc--cccEEEEECCCCcEEEE--------------
Confidence 566677788888765 344443 68999999987553221
Q ss_pred CCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 048801 526 PPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG 585 (1715)
Q Consensus 526 ~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g 585 (1715)
..+...+.+++|+|||++|++++.++.|+|||+.+++.+.++..
T Consensus 276 ----------------~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 276 ----------------VPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp ----------------EECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred ----------------EcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 12345688999999999999999999999999999999998864
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=2.1e-17 Score=192.84 Aligned_cols=316 Identities=10% Similarity=-0.016 Sum_probs=208.0
Q ss_pred EEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEE----------eCCCeeEE
Q 048801 247 YCAIFDRSGRFVITGS-----DDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASA----------SNDFVIRV 311 (1715)
Q Consensus 247 t~VafSpDG~~LaTGS-----~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASG----------S~DGtIrV 311 (1715)
.-.+.+|||+.++... .++.|.+||..+++.+.++..+..+ .++|||||++|+++ +.|+.|++
T Consensus 5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v 82 (355)
T d2bbkh_ 5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEV 82 (355)
T ss_dssp BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence 3345689999987763 3567999999999999998866544 79999999988764 34789999
Q ss_pred EECCCCCceEEEeCCCC-------CeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 312 WRLPDGLPISVLRGHTG-------AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 312 WDl~tg~~l~~L~gH~~-------~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
||+.+++.+..+..+.. ....++|+|++... +++..+.+..+.+|+..+++.+..+..+.....
T Consensus 83 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 153 (355)
T d2bbkh_ 83 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTL-LFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI-------- 153 (355)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEE-EEEECSSSCEEEEEETTTTEEEEEEECCSEEEE--------
T ss_pred EECCCCCEEEEEecCCcceeecCCCCceEEEecCCCee-EEecCCCCceeeeeecCCCcEeeEEecCCcceE--------
Confidence 99999998888764432 33568999999832 333446678899999998876665543211000
Q ss_pred CCCCCCCCCCCCCcceeEEEEccCCCeEEEe-cCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccc
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNANGTVFVTG-SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVAS 463 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSpdG~~LatG-s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as 463 (1715)
........++++++|..++.. ..++.+.+++..... ..+...+....+.+.+
T Consensus 154 ----------~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~--- 206 (355)
T d2bbkh_ 154 ----------FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH--------------PEDEFLINHPAYSQKA--- 206 (355)
T ss_dssp ----------EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS--------------CTTSCBCSCCEEETTT---
T ss_pred ----------eecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc--------------ceecceeeeccccCCC---
Confidence 001223456677777665543 334455555554321 1222334444555443
Q ss_pred cccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccC
Q 048801 464 RSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLP 543 (1715)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~ 543 (1715)
..++.++.++.+.+|++..+....... .... .........
T Consensus 207 -----------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~----------------~~~~~~~~~ 246 (355)
T d2bbkh_ 207 -----------------------GRLVWPTYTGKIHQIDLSSGDAKFLPA-VEAL----------------TEAERADGW 246 (355)
T ss_dssp -----------------------TEEEEEBTTSEEEEEECTTSSCEECCC-EESS----------------CHHHHHTTE
T ss_pred -----------------------CeEEEecCCCeEEEEecCCCcEEEEec-cCCc----------------ccceEeeee
Confidence 578888999999999998754211100 0000 000000111
Q ss_pred CCCCeeEEEeCCCCCEEEEEecC----------CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCc-EEEEEeCCCcE
Q 048801 544 TPRGVNMIVWSLDNRFVLAAIMD----------CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPR-IAMSAGYDGRT 612 (1715)
Q Consensus 544 h~~~VtslafSPDG~~LaTgs~D----------GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~-lLaSgs~DGtI 612 (1715)
.......+++++++..++....+ ..|.+||+.+++.+..+.. ...+.+++|+|++.. ++++++.|+.|
T Consensus 247 ~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i 325 (355)
T d2bbkh_ 247 RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTL 325 (355)
T ss_dssp EECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred eccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEE
Confidence 12334568999999998876544 3699999999999888864 345789999995544 56777889999
Q ss_pred EEEECCCCceEEEEEcccceEEEEEEcCC
Q 048801 613 IVWDIWEGTPIRIYEIGRFKLVDGKFSPD 641 (1715)
Q Consensus 613 ~VWDl~tgk~l~tl~~h~~~V~svafSPD 641 (1715)
.|||+.+|+.++++..+......+.+.++
T Consensus 326 ~v~D~~tg~~~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 326 YIHDAESGEELRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp EEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred EEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence 99999999999999754333344444433
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.73 E-value=1.1e-15 Score=179.78 Aligned_cols=300 Identities=10% Similarity=-0.032 Sum_probs=203.9
Q ss_pred cCCCCCeEEEEECCCCCEEEEE-----eCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEe--------
Q 048801 282 RGHEGDITDLAVSSNNTLVASA-----SNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS-------- 348 (1715)
Q Consensus 282 ~gHs~~VtsLafSpDg~lLASG-----S~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSg-------- 348 (1715)
..+.+++.+++++|||+.++.. +..+.|.+||..+++.+..+..+... .++|+|+++ +|+++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~---~l~va~~~~~~~~ 91 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGS---EFALASTSFSRIA 91 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCC---EEEEEeecCCccc
Confidence 3578899999999999988765 23467999999999999998766544 799999998 56554
Q ss_pred --cCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec--CCCeEEEE
Q 048801 349 --SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS--SDTFARVW 424 (1715)
Q Consensus 349 --S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs--~DG~IrVW 424 (1715)
..++.|.+||+.+++.+..+..+....... ......+.|+++++.+++.. .++.+.+|
T Consensus 92 ~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~------------------~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~ 153 (373)
T d2madh_ 92 KGKRTDYVEVFDPVTFLPIADIELPDAPRFDV------------------GPYSWMNANTPNNADLLFFQFAAGPAVGLV 153 (373)
T ss_pred ccccceEEEEEECCCCcEEEEEecCCcceeEe------------------ccCCCcEEEEeCCCcEEEEEEcCCCceEEe
Confidence 346889999999998776654432211100 11134688999998765543 45678888
Q ss_pred eCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecC
Q 048801 425 SACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPR 504 (1715)
Q Consensus 425 Dl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~ 504 (1715)
+....+ ...+.....++.+++++ ...+++.+.||.+.+|+..
T Consensus 154 ~~~~~~-------------~~~~~~~~~~~~~s~~g-------------------------~~~~v~~~~dg~~~~~~~~ 195 (373)
T d2madh_ 154 VQGGSS-------------DDQLLSSPTCYHIHPGA-------------------------PSTFYLLCAQGGLAKTDHA 195 (373)
T ss_pred eccCCe-------------EEEEeccceeEEEecCC-------------------------CcEEEEEcCCCeEEEEEcC
Confidence 886532 12233346678888876 3577899999999999988
Q ss_pred CCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEE--
Q 048801 505 SRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHS-- 582 (1715)
Q Consensus 505 t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~t-- 582 (1715)
++........ .............+.+++++.++ ..+.++.+.+|+..++.....
T Consensus 196 ~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~ 251 (373)
T d2madh_ 196 GGAAGAGLVG-----------------------AMLTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISAAGATNKAP 251 (373)
T ss_pred CceeeEEEee-----------------------eccccCccceeeeEEECCCceEE-EecCCceEEEEEcCCCeEEEEEe
Confidence 6442211100 00001112223455666666554 456788999999887654322
Q ss_pred EecCC----------CCeEEEEEccCCC---------cEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCC
Q 048801 583 LTGHS----------ASSYVLDVHPFNP---------RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGT 643 (1715)
Q Consensus 583 L~gH~----------~~V~sLafSP~dg---------~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~ 643 (1715)
+..+. .....+++++++. ..+++...++.|.+||+.+++.+..+. +...+..++|||||+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~ 330 (373)
T d2madh_ 252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGG 330 (373)
T ss_pred eccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCC
Confidence 22221 2223445555332 233456677889999999999999887 455788999999998
Q ss_pred E--EEEEeCCCeEEEEECCCCccccc
Q 048801 644 S--IVLSDDVGQIYLLNTGQGESQKD 667 (1715)
Q Consensus 644 ~--LAsgs~DG~I~IWdl~tGe~~k~ 667 (1715)
. +++++.|+.|+|||+.+|+.+..
T Consensus 331 ~~l~vt~~~d~~v~v~D~~tg~~~~~ 356 (373)
T d2madh_ 331 PDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEEEEeCCCCeEEEEECCCCCEEEE
Confidence 5 45788999999999999987643
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.70 E-value=6e-16 Score=178.15 Aligned_cols=290 Identities=9% Similarity=-0.059 Sum_probs=192.4
Q ss_pred ccCccccccceeEEEEc-CCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcEEEEecCCC------CCeEEEEECC
Q 048801 224 AKPSTMVQKMQNIKKLR-GHRDAVYCAIFDRSGRFVI-TGSDDRLVKIWSMETAFCLASCRGHE------GDITDLAVSS 295 (1715)
Q Consensus 224 ~~~~~~~~~~k~l~~L~-GH~~~Vt~VafSpDG~~La-TGS~DGtIrIWDl~tgk~l~tL~gHs------~~VtsLafSp 295 (1715)
....+++.+.+.++++. .|...+.+++|+|||++|+ +++.++.|.+||+.+++.+..+.... ..+..++|+|
T Consensus 19 ~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~ 98 (346)
T d1jmxb_ 19 NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP 98 (346)
T ss_dssp EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT
T ss_pred EEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEec
Confidence 33455667888899887 5677889999999999875 55678999999999999988775432 2356789999
Q ss_pred CCCEEEEEe------------CCCeeEEEECCCCCceEEEeC--CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC
Q 048801 296 NNTLVASAS------------NDFVIRVWRLPDGLPISVLRG--HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY 361 (1715)
Q Consensus 296 Dg~lLASGS------------~DGtIrVWDl~tg~~l~~L~g--H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t 361 (1715)
||++|++++ .++.+.+|+..++.....+.. ....+..+.+++++. ++++ + +.+.+|++.+
T Consensus 99 DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~--~~~~~~~~~~ 172 (346)
T d1jmxb_ 99 DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS---LYVA-G--PDIYKMDVKT 172 (346)
T ss_dssp TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC---EEEE-S--SSEEEECTTT
T ss_pred CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE---EEEe-C--CcceEEEccC
Confidence 999988765 467899999988766554432 234566777777765 3443 2 4589999998
Q ss_pred CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCccee----EEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCC
Q 048801 362 SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQIL----CCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQP 437 (1715)
Q Consensus 362 g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vt----slafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~ 437 (1715)
++.+..+.......... ..+ ..............+. ...+......++++..++.+.+|++.++.
T Consensus 173 ~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 241 (346)
T d1jmxb_ 173 GKYTVALPLRNWNRKGY---SAP-DVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK------- 241 (346)
T ss_dssp CCEEEEECSTTCCCTTB---CCC-BCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC-------
T ss_pred CCEEEEEecCCCccceE---Eec-cccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCc-------
Confidence 88766654432211110 000 0000111111111111 12223344556667777889999997753
Q ss_pred ceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccc
Q 048801 438 IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTR 517 (1715)
Q Consensus 438 ~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~ 517 (1715)
.....+..|...+..+.+++++ ..++.+. ++.|.+||+.+++...
T Consensus 242 -~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~-~~~v~v~d~~~~~~~~------- 286 (346)
T d1jmxb_ 242 -THTQEFADLTELYFTGLRSPKD--------------------------PNQIYGV-LNRLAKYDLKQRKLIK------- 286 (346)
T ss_dssp -EEEEEEEECSSCEEEEEECSSC--------------------------TTEEEEE-ESEEEEEETTTTEEEE-------
T ss_pred -eEEEEeecccceeEEEEEeCCC--------------------------CEEEEec-CCeEEEEECCCCcEEE-------
Confidence 2234456677788888888875 3444443 4689999998754221
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCC
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSA 588 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~ 588 (1715)
...+...+.+++|||||++|++++.|+.|+|||+.+++.+.++..+.+
T Consensus 287 -----------------------~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g 334 (346)
T d1jmxb_ 287 -----------------------AANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG 334 (346)
T ss_dssp -----------------------EEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred -----------------------EEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCC
Confidence 112334688999999999999999999999999999999999985544
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=2.4e-15 Score=172.87 Aligned_cols=302 Identities=11% Similarity=0.098 Sum_probs=190.2
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEE--ecCCCCCeEEEEECCCCCEEEEEe-CCCeeEEEECCCCCceEEEe---CCCCCe
Q 048801 257 FVITGSDDRLVKIWSMETAFCLAS--CRGHEGDITDLAVSSNNTLVASAS-NDFVIRVWRLPDGLPISVLR---GHTGAV 330 (1715)
Q Consensus 257 ~LaTGS~DGtIrIWDl~tgk~l~t--L~gHs~~VtsLafSpDg~lLASGS-~DGtIrVWDl~tg~~l~~L~---gH~~~V 330 (1715)
.+++++.|++|+||++.+...+.. ...|.+.|.+|+|+|||++|++++ .|+.|++|++........+. .+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 346777999999999875433332 235889999999999999986555 58999999998765443332 244567
Q ss_pred EEEEecCCCCcceEEEEec-CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC
Q 048801 331 TAIAFSPRPSAIYQLLSSS-DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG 409 (1715)
Q Consensus 331 tsLafSPdg~~~~~LaSgS-~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG 409 (1715)
.+++|+|+++ +|++++ .++.|.+|+............ ..+...+.++.|+|++
T Consensus 86 ~~l~~spDg~---~l~v~~~~~~~v~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~v~~s~d~ 139 (333)
T d1ri6a_ 86 THISTDHQGQ---FVFVGSYNAGNVSVTRLEDGLPVGVVDV-----------------------VEGLDGCHSANISPDN 139 (333)
T ss_dssp SEEEECTTSS---EEEEEETTTTEEEEEEEETTEEEEEEEE-----------------------ECCCTTBCCCEECTTS
T ss_pred eEEEEcCCCC---EEeecccCCCceeeeccccccceecccc-----------------------cCCCccceEEEeeecc
Confidence 7899999998 566665 577899998776543322211 1123346788999999
Q ss_pred CeEEEecC-CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCce
Q 048801 410 TVFVTGSS-DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN 488 (1715)
Q Consensus 410 ~~LatGs~-DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~ 488 (1715)
+++++++. +..|.+|+........ .................++|++++ ...
T Consensus 140 ~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~g~~p~~i~~~~~~-------------------------~~~ 191 (333)
T d1ri6a_ 140 RTLWVPALKQDRICLFTVSDDGHLV---AQDPAEVTTVEGAGPRHMVFHPNE-------------------------QYA 191 (333)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSCEE---EEEEEEEECSTTCCEEEEEECTTS-------------------------SEE
T ss_pred eeeeccccccceeeEEEeccCCcce---eeeceeeeeecCCCccEEEEeccc-------------------------eeE
Confidence 98777664 5678999986532100 001111222344556788898876 234
Q ss_pred EEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEE-ecCC
Q 048801 489 IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAA-IMDC 567 (1715)
Q Consensus 489 LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTg-s~DG 567 (1715)
+++....+...+|+........... ..+.. .............+++++++++++++ ..++
T Consensus 192 ~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~--------------~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~ 252 (333)
T d1ri6a_ 192 YCVNELNSSVDVWELKDPHGNIECV-----QTLDM--------------MPENFSDTRWAADIHITPDGRHLYACDRTAS 252 (333)
T ss_dssp EEEETTTTEEEEEESSCTTSCCEEE-----EEEEC--------------SCTTCCSCCCEEEEEECTTSSEEEEEETTTT
T ss_pred EeeccccCceEEEeecccccceeee-----eeeee--------------eecCCCccccceeEEEecccCceeeecccCC
Confidence 5566677788888765422111100 00000 00011223456778999999977665 4567
Q ss_pred eEEEEECCCCceEEEE---ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE--CCCCce--EEEEEcccc
Q 048801 568 RICVWNAVDGSLVHSL---TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD--IWEGTP--IRIYEIGRF 631 (1715)
Q Consensus 568 tI~IWDl~sg~~l~tL---~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD--l~tgk~--l~tl~~h~~ 631 (1715)
.+.+|++........+ ..+...+.+++|+|++..+++++..++.|.||+ ..+|++ +..+..+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~~~~~~g~~ 323 (333)
T d1ri6a_ 253 LITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQG 323 (333)
T ss_dssp EEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred eEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEEEeccCCCC
Confidence 8999998765443333 234456788999995444455555678999995 456754 444554443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=3.7e-15 Score=171.31 Aligned_cols=286 Identities=10% Similarity=0.084 Sum_probs=189.1
Q ss_pred EEEEEeCCCeeEEEECCCCCceEEE--eCCCCCeEEEEecCCCCcceEE-EEecCCCcEEEEecCCCCCcceecCCCCCC
Q 048801 299 LVASASNDFVIRVWRLPDGLPISVL--RGHTGAVTAIAFSPRPSAIYQL-LSSSDDGTCRIWDARYSQYSPRIYLPKPPD 375 (1715)
Q Consensus 299 lLASGS~DGtIrVWDl~tg~~l~~L--~gH~~~VtsLafSPdg~~~~~L-aSgS~DGtVrIWDl~tg~~l~~i~~~~~~~ 375 (1715)
.+++++.|++|+||++.+...+..+ ..|.+.+.+|+|+|+++ +| +++..|+.|.+|++........+...
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~---~L~v~~~~d~~i~~~~i~~~~~~~~~~~~---- 78 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR---YLYVGVRPEFRVLAYRIAPDDGALTFAAE---- 78 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSS---EEEEEETTTTEEEEEEECTTTCCEEEEEE----
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCC---EEEEEECCCCeEEEEEEeCCCCcEEEeee----
Confidence 4577789999999999765544433 35889999999999998 55 56667899999999765533222110
Q ss_pred CccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEE
Q 048801 376 AITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV 454 (1715)
Q Consensus 376 ~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sL 454 (1715)
......+..++|+|||++|++++. ++.|.+|+..... .........+...+.++
T Consensus 79 ------------------~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~v 133 (333)
T d1ri6a_ 79 ------------------SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-------PVGVVDVVEGLDGCHSA 133 (333)
T ss_dssp ------------------EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTE-------EEEEEEEECCCTTBCCC
T ss_pred ------------------cccCCCceEEEEcCCCCEEeecccCCCceeeecccccc-------ceecccccCCCccceEE
Confidence 011234678999999998888874 6789999876532 12233445566778889
Q ss_pred EEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 455 QFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 455 afspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
.+++++ ...++....+..|.+|+............
T Consensus 134 ~~s~d~-------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------------------- 168 (333)
T d1ri6a_ 134 NISPDN-------------------------RTLWVPALKQDRICLFTVSDDGHLVAQDP-------------------- 168 (333)
T ss_dssp EECTTS-------------------------SEEEEEEGGGTEEEEEEECTTSCEEEEEE--------------------
T ss_pred Eeeecc-------------------------eeeeccccccceeeEEEeccCCcceeeec--------------------
Confidence 999986 23444455667899998765321110000
Q ss_pred CCCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCc----eEEEEe------cCCCCeEEEEEccCCCcEE
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGS----LVHSLT------GHSASSYVLDVHPFNPRIA 603 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~----~l~tL~------gH~~~V~sLafSP~dg~lL 603 (1715)
.............++|++++.+++... ..+...+|+..... ....+. ........+++++++..++
T Consensus 169 ---~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~ 245 (333)
T d1ri6a_ 169 ---AEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 245 (333)
T ss_dssp ---EEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred ---eeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence 000112234467899999999887655 45677888764432 222221 1234567789999666677
Q ss_pred EEEeCCCcEEEEECCCCceEEEEE---cccceEEEEEEcCCCCEEEEEe-CCCeEEEEE--CCCCcc
Q 048801 604 MSAGYDGRTIVWDIWEGTPIRIYE---IGRFKLVDGKFSPDGTSIVLSD-DVGQIYLLN--TGQGES 664 (1715)
Q Consensus 604 aSgs~DGtI~VWDl~tgk~l~tl~---~h~~~V~svafSPDG~~LAsgs-~DG~I~IWd--l~tGe~ 664 (1715)
+++..++.+.+|++........+. .....+.+++|+|||++|++++ .++.|.||+ ..+|.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 312 (333)
T ss_dssp EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred eecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence 777788999999987654433332 2234567899999999988775 468899985 456654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.67 E-value=2.5e-15 Score=174.93 Aligned_cols=295 Identities=14% Similarity=0.066 Sum_probs=189.2
Q ss_pred eEEEEECCCCCEEEEEe-----CCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEE----------ecCCC
Q 048801 288 ITDLAVSSNNTLVASAS-----NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLS----------SSDDG 352 (1715)
Q Consensus 288 VtsLafSpDg~lLASGS-----~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaS----------gS~DG 352 (1715)
+.-.+.+||++.+++.. .+..|.|||..+++.+.++..+... .++|+|+++. |++ ++.|+
T Consensus 4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~---l~v~~~~~~~~~~g~~d~ 78 (355)
T d2bbkh_ 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSF---IAHASTVFSRIARGERTD 78 (355)
T ss_dssp CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSC---EEEEEEEEEETTEEEEEE
T ss_pred cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCE---EEEEeCCCccccccCCCC
Confidence 33446789999987763 3567999999999999988765444 7999999984 433 34578
Q ss_pred cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec--CCCeEEEEeCCCCC
Q 048801 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS--SDTFARVWSACKSS 430 (1715)
Q Consensus 353 tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs--~DG~IrVWDl~t~~ 430 (1715)
.|++||+.+++.+..+..+...... .......++|+++|++++++. .+..+.+|+..+++
T Consensus 79 ~v~v~D~~t~~~~~~~~~~~~~~~~------------------~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~ 140 (355)
T d2bbkh_ 79 YVEVFDPVTLLPTADIELPDAPRFL------------------VGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA 140 (355)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCC------------------BSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred EEEEEECCCCCEEEEEecCCcceee------------------cCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCc
Confidence 9999999999877666543221111 122245689999999877664 56789999998753
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
. +..+..+.... .+ +.+ ....++.+.||...++.........
T Consensus 141 ~---------~~~~~~~~~~~---~~-~~~-------------------------~~~~~~~~~dg~~~~v~~~~~~~~~ 182 (355)
T d2bbkh_ 141 F---------KRMLDVPDCYH---IF-PTA-------------------------PDTFFMHCRDGSLAKVAFGTEGTPE 182 (355)
T ss_dssp E---------EEEEECCSEEE---EE-EEE-------------------------TTEEEEEETTSCEEEEECCSSSCCE
T ss_pred E---------eeEEecCCcce---Ee-ecC-------------------------CcceEEEcCCCCEEEEEecCCCeEE
Confidence 2 33333222111 01 111 1344455556665555443221110
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEE--EEecCC-
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVH--SLTGHS- 587 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~--tL~gH~- 587 (1715)
.. ... .....+...+....+++++..++.++.++.+++|++..++... ....+.
T Consensus 183 ~~-------~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 239 (355)
T d2bbkh_ 183 IT-------HTE----------------VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTE 239 (355)
T ss_dssp EE-------ECC----------------CCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred EE-------ecc----------------cccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCccc
Confidence 00 000 0001122334556788888899999999999999998876432 222221
Q ss_pred ---------CCeEEEEEccCCCcEEEEEeC---------CCcEEEEECCCCceEEEEEcccceEEEEEEcCCCC--EEEE
Q 048801 588 ---------ASSYVLDVHPFNPRIAMSAGY---------DGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGT--SIVL 647 (1715)
Q Consensus 588 ---------~~V~sLafSP~dg~lLaSgs~---------DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~--~LAs 647 (1715)
.....+++++++..++++... ...|.+||+.+++.+..+.. ...+.+++|+|||+ ++++
T Consensus 240 ~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~ 318 (355)
T d2bbkh_ 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYAL 318 (355)
T ss_dssp HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEE
T ss_pred ceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEE
Confidence 223457888844444443322 23799999999999998874 45688999999998 3456
Q ss_pred EeCCCeEEEEECCCCccccc
Q 048801 648 SDDVGQIYLLNTGQGESQKD 667 (1715)
Q Consensus 648 gs~DG~I~IWdl~tGe~~k~ 667 (1715)
++.++.|+|||+.+|+.++.
T Consensus 319 ~~~d~~i~v~D~~tg~~~~~ 338 (355)
T d2bbkh_ 319 STGDKTLYIHDAESGEELRS 338 (355)
T ss_dssp ETTTTEEEEEETTTCCEEEE
T ss_pred ECCCCEEEEEECCCCCEEEE
Confidence 67799999999999986653
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.52 E-value=6.6e-13 Score=162.34 Aligned_cols=165 Identities=8% Similarity=0.019 Sum_probs=112.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec-----CCCCCeEEEEECCCCCEEEEEeC---------CCeeEEEE
Q 048801 248 CAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR-----GHEGDITDLAVSSNNTLVASASN---------DFVIRVWR 313 (1715)
Q Consensus 248 ~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~-----gHs~~VtsLafSpDg~lLASGS~---------DGtIrVWD 313 (1715)
.+.|.+|+.++.. .|+.|.+||+.+++....+. .|...|.++.|||||++|+.++. ++.+.|||
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 3568899987764 47889999999998876554 34578999999999999998854 56789999
Q ss_pred CCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCC
Q 048801 314 LPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393 (1715)
Q Consensus 314 l~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~ 393 (1715)
+.+++ +..+..|...+..+.|+|+|. .|+.. .++.+.+|+..++................+.. .....
T Consensus 99 ~~~~~-~~~l~~~~~~~~~~~~SPDG~---~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~-------d~~~~ 166 (470)
T d2bgra1 99 LNKRQ-LITEERIPNNTQWVTWSPVGH---KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGIT-------DWVYE 166 (470)
T ss_dssp TTTTE-ECCSSCCCTTEEEEEECSSTT---CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBC-------CHHHH
T ss_pred CCCCc-ccccccCCccccccccccCcc---eeeEe-ecccceEEECCCCceeeeeeccCCCccccccc-------ceeee
Confidence 99886 456788999999999999998 55654 46789999998886543322111100000000 00000
Q ss_pred CCCCcceeEEEEccCCCeEEEecCCCe-EEEEeC
Q 048801 394 GLQSHQILCCAYNANGTVFVTGSSDTF-ARVWSA 426 (1715)
Q Consensus 394 ~~h~~~VtslafSpdG~~LatGs~DG~-IrVWDl 426 (1715)
.........+.|+|||+.|+....|.. +..|.+
T Consensus 167 ~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred eeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence 001223456889999999998865433 444443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.52 E-value=1.1e-13 Score=163.77 Aligned_cols=307 Identities=9% Similarity=-0.077 Sum_probs=184.9
Q ss_pred CCCCeEEEEEcCCCCEEE---EEeCCCc--EEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEe----------CC
Q 048801 242 HRDAVYCAIFDRSGRFVI---TGSDDRL--VKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASAS----------ND 306 (1715)
Q Consensus 242 H~~~Vt~VafSpDG~~La---TGS~DGt--IrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS----------~D 306 (1715)
+.+....++..++++... ++..+|. |.+||..+++.+.++.++... .++|+|||++|++++ .|
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence 344444555677887532 2334444 667799999999998877765 589999999988765 36
Q ss_pred CeeEEEECCCCCceEEEeCCCC-------CeEEEEecCCCCcceEEEEe-cCCCcEEEEecCCCCCcceecCCCCCCCcc
Q 048801 307 FVIRVWRLPDGLPISVLRGHTG-------AVTAIAFSPRPSAIYQLLSS-SDDGTCRIWDARYSQYSPRIYLPKPPDAIT 378 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH~~-------~VtsLafSPdg~~~~~LaSg-S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~ 378 (1715)
+.|.+||..+++++..+..+.. ....++|+|+++ +|+++ ..++.+.+||+.+++....+..+....
T Consensus 96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk---~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~--- 169 (368)
T d1mdah_ 96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA---CLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH--- 169 (368)
T ss_dssp EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS---CEEEEECSSSCEEEEEETTTEEEEEEECSSCCC---
T ss_pred CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCC---EEEEEeCCCCeEEEEECCCCcEeEEeeccCcce---
Confidence 7899999999999888764432 234689999998 44444 568999999999988766654322110
Q ss_pred CccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEcc
Q 048801 379 GKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSG 458 (1715)
Q Consensus 379 g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafsp 458 (1715)
..+. ....+++.+.||.+.+|++........ .........+...+..+.+.+
T Consensus 170 ---------------~~~~----------~~~~~v~~~~Dg~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 221 (368)
T d1mdah_ 170 ---------------IHPG----------AAATHYLGSCPASLAASDLAAAPAAAG---IVGAQCTGAQNCSSQAAQANY 221 (368)
T ss_dssp ---------------CEEE----------ETTEEECCCCTTSCEEEECCSSCCCCE---ECCCCSCTTSCBCSCCEEETT
T ss_pred ---------------EccC----------CCceEEEEcCCCCEEEEEecCCceeee---eeecccccccccceeeccccc
Confidence 0001 123344444555555555543211000 000011222333444455555
Q ss_pred CcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCc
Q 048801 459 CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPR 538 (1715)
Q Consensus 459 dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 538 (1715)
++ .+.....+.+.++++......... .+.. .....
T Consensus 222 ~g----------------------------~~~~~~~~~v~~~~~~~~~~~~~~-~~~~----------------~~~~~ 256 (368)
T d1mdah_ 222 PG----------------------------MLVWAVASSILQGDIPAAGATMKA-AIDG----------------NESGR 256 (368)
T ss_dssp TT----------------------------EEEECBSSCCEEEECCSSCCEEEC-CCCS----------------SCTHH
T ss_pred Cc----------------------------EEEEecCCCEEEEeecCCceEEEe-eccc----------------cccee
Confidence 43 122223445555555432211000 0000 00000
Q ss_pred ccccCCCCCeeEEEeCCCCCEEEEEecC---------CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCc-EEEEEeC
Q 048801 539 QRLLPTPRGVNMIVWSLDNRFVLAAIMD---------CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPR-IAMSAGY 608 (1715)
Q Consensus 539 ~~l~~h~~~VtslafSPDG~~LaTgs~D---------GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~-lLaSgs~ 608 (1715)
............+++++++..+++...+ ..|.+||..+++.+..+.. ...+.+++|+|++.. +++++..
T Consensus 257 ~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~ 335 (368)
T d1mdah_ 257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAG 335 (368)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETT
T ss_pred eeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCC
Confidence 0000112234558899999887765433 3599999999998887763 356889999996554 5677788
Q ss_pred CCcEEEEECCCCceEEEEEccc
Q 048801 609 DGRTIVWDIWEGTPIRIYEIGR 630 (1715)
Q Consensus 609 DGtI~VWDl~tgk~l~tl~~h~ 630 (1715)
|+.|+|||..+|+.+.++..+.
T Consensus 336 ~~~v~v~D~~tgk~~~~i~~g~ 357 (368)
T d1mdah_ 336 TEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp TTEEEEEESSSCEEEEECCCCS
T ss_pred CCeEEEEECCCCCEEEEEECCC
Confidence 9999999999999999988554
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.45 E-value=1.4e-12 Score=154.11 Aligned_cols=298 Identities=11% Similarity=-0.065 Sum_probs=189.0
Q ss_pred CCCCeEEEEECCCCCEEEE---EeCCCe--eEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEE----------e
Q 048801 284 HEGDITDLAVSSNNTLVAS---ASNDFV--IRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLS----------S 348 (1715)
Q Consensus 284 Hs~~VtsLafSpDg~lLAS---GS~DGt--IrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaS----------g 348 (1715)
+.+....++..++++.... ...+++ |.+||..+++.+.++.++... .++|+|++.. |++ |
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~---i~~~~~~~~~~~~g 92 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSD---FALASTSFARSAKG 92 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSC---EEEEEEEETTTTSS
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCE---EEEEcccCcccccc
Confidence 4455566677788875322 334444 667799999999988876654 5899999984 443 2
Q ss_pred cCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-CCCeEEEEeCC
Q 048801 349 SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS-SDTFARVWSAC 427 (1715)
Q Consensus 349 S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs-~DG~IrVWDl~ 427 (1715)
+.|+.|.+||..+++.+..+..+....... ......++|+|||++|+++. .++.+.+||+.
T Consensus 93 ~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~------------------g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~ 154 (368)
T d1mdah_ 93 KRTDYVEVFDPVTFLPIADIELPDAPRFSV------------------GPRVHIIGNCASSACLLFFLFGSSAAAGLSVP 154 (368)
T ss_dssp SEEEEEEEECTTTCCEEEEEEETTSCSCCB------------------SCCTTSEEECTTSSCEEEEECSSSCEEEEEET
T ss_pred ccCCeEEEEECCCCcEeeeecCCccceecc------------------cCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 457889999999998777665443222111 11234689999999888775 57999999998
Q ss_pred CCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCc
Q 048801 428 KSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 507 (1715)
Q Consensus 428 t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~ 507 (1715)
+++. +..+..+.... +.+.+ ...++..+.||.+.+|++....
T Consensus 155 ~~~~---------~~~~~~~~~~~----~~~~~-------------------------~~~~v~~~~Dg~~~~~~~~~~~ 196 (368)
T d1mdah_ 155 GASD---------DQLTKSASCFH----IHPGA-------------------------AATHYLGSCPASLAASDLAAAP 196 (368)
T ss_dssp TTEE---------EEEEECSSCCC----CEEEE-------------------------TTEEECCCCTTSCEEEECCSSC
T ss_pred CCcE---------eEEeeccCcce----EccCC-------------------------CceEEEEcCCCCEEEEEecCCc
Confidence 7532 33333332221 11111 3577788889999999877533
Q ss_pred cCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe--c
Q 048801 508 SHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT--G 585 (1715)
Q Consensus 508 ~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~--g 585 (1715)
...... .......+...+..+.+.+++..+.+. ++.+++++...+....... .
T Consensus 197 ~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~ 251 (368)
T d1mdah_ 197 AAAGIV-----------------------GAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDG 251 (368)
T ss_dssp CCCEEC-----------------------CCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCS
T ss_pred eeeeee-----------------------ecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeeccc
Confidence 111100 000112233344556777777666543 4566677766554433221 1
Q ss_pred C----------CCCeEEEEEccCCCcEEEEEeCC--------CcEEEEECCCCceEEEEEcccceEEEEEEcCCCCE--E
Q 048801 586 H----------SASSYVLDVHPFNPRIAMSAGYD--------GRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTS--I 645 (1715)
Q Consensus 586 H----------~~~V~sLafSP~dg~lLaSgs~D--------GtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~--L 645 (1715)
+ ......++++++++.++++...+ ..|.+||..+++.+..+.. ...+..++|||||+. +
T Consensus 252 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly 330 (368)
T d1mdah_ 252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNY 330 (368)
T ss_dssp SCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEE
T ss_pred ccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEE
Confidence 1 11223577888666555543322 3599999999999988874 456888999999973 3
Q ss_pred EEEeCCCeEEEEECCCCcccccc
Q 048801 646 VLSDDVGQIYLLNTGQGESQKDA 668 (1715)
Q Consensus 646 Asgs~DG~I~IWdl~tGe~~k~~ 668 (1715)
+++..++.|+|||+.+|+.+...
T Consensus 331 ~s~~~~~~v~v~D~~tgk~~~~i 353 (368)
T d1mdah_ 331 ANSAGTEVLDIYDAASDQDQSSV 353 (368)
T ss_dssp EEETTTTEEEEEESSSCEEEEEC
T ss_pred EEeCCCCeEEEEECCCCCEEEEE
Confidence 46677899999999999876543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.36 E-value=2.1e-11 Score=148.74 Aligned_cols=115 Identities=13% Similarity=0.079 Sum_probs=89.1
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCee
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSD---------DRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVI 309 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~---------DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtI 309 (1715)
|..|...|.++.|||||++|+.++. ++.+.|||+.+++ +..+..|...+..+.|||||++||.. .++.+
T Consensus 57 ~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l 134 (470)
T d2bgra1 57 FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDI 134 (470)
T ss_dssp TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEE
T ss_pred hhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEe-ecccc
Confidence 3456788999999999999998853 5688999999886 45688899999999999999999996 46789
Q ss_pred EEEECCCCCceEEEeCC------------------CCCeEEEEecCCCCcceEEEEecCCCc-EEEEe
Q 048801 310 RVWRLPDGLPISVLRGH------------------TGAVTAIAFSPRPSAIYQLLSSSDDGT-CRIWD 358 (1715)
Q Consensus 310 rVWDl~tg~~l~~L~gH------------------~~~VtsLafSPdg~~~~~LaSgS~DGt-VrIWD 358 (1715)
.+|++.++...+....+ .+....+.|+|+++ +|+....|.+ +..|.
T Consensus 135 ~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk---~ia~~~~d~~~v~~~~ 199 (470)
T d2bgra1 135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT---FLAYAQFNDTEVPLIE 199 (470)
T ss_dssp EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS---EEEEEEEECTTCCEEE
T ss_pred eEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCC---ccceeEecCCcCceEE
Confidence 99999988776544322 23346688999998 6776655433 54444
|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1e-12 Score=127.70 Aligned_cols=100 Identities=15% Similarity=0.279 Sum_probs=89.2
Q ss_pred HHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCC
Q 048801 1615 KLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKN 1694 (1715)
Q Consensus 1615 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~ 1694 (1715)
+|+..+.++......++....|..+++....++|...+..|||++||++||+++.|++++++..||++|++||.+||.++
T Consensus 2 ~L~~~l~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 81 (102)
T d3d7ca1 2 QLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPD 81 (102)
T ss_dssp HHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred hHHHHHHHHHHHHHhCCCCCccCCCCChhhCcCHHHHcCCccCHHHHHHHhccCccCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 45566666665555567778888888888889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhc
Q 048801 1695 AALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1695 ~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
+.|...|+.|.+.|.++|.+
T Consensus 82 s~~~~~A~~l~~~f~~~~ke 101 (102)
T d3d7ca1 82 SEYCRCASALEKFFYFKLKE 101 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998863
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.27 E-value=8.2e-12 Score=150.85 Aligned_cols=298 Identities=9% Similarity=0.029 Sum_probs=182.5
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEecC------------------------------CCCCeEEEEECCCCCEEEEEe-CC
Q 048801 258 VITGSDDRLVKIWSMETAFCLASCRG------------------------------HEGDITDLAVSSNNTLVASAS-ND 306 (1715)
Q Consensus 258 LaTGS~DGtIrIWDl~tgk~l~tL~g------------------------------Hs~~VtsLafSpDg~lLASGS-~D 306 (1715)
+++|+.+|.|.||++.+++.++++.- |...+....++|||++|++.. .+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 56778899999999999998887531 233455555678999996664 57
Q ss_pred CeeEEEECCCCCceEEEe-CCCCCeEEEEecCCCCcceEEEEecCCCc-----------------EEEEecCCCCCccee
Q 048801 307 FVIRVWRLPDGLPISVLR-GHTGAVTAIAFSPRPSAIYQLLSSSDDGT-----------------CRIWDARYSQYSPRI 368 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~-gH~~~VtsLafSPdg~~~~~LaSgS~DGt-----------------VrIWDl~tg~~l~~i 368 (1715)
+.|.+||+.+++....+. .+...+..++|+|+++.. +++..+.+.. +..+|..+.+...++
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~-YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI 172 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTN-YVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV 172 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCC-EEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEE-EEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence 899999999999888775 467789999999998764 4444444332 233455444433332
Q ss_pred cCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC-eEEEEeCCCCCccCCCCCceeeeeecCC
Q 048801 369 YLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT-FARVWSACKSSVEDSEQPIHELDVLSGH 447 (1715)
Q Consensus 369 ~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG-~IrVWDl~t~~~~~~~~~~~~l~~l~gH 447 (1715)
.. ......++|+|+|+++++++.+. .+..++..+.+. ...+....
T Consensus 173 ~v--------------------------~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~------~d~i~v~n-- 218 (441)
T d1qnia2 173 IV--------------------------DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRND------RDWVVVFN-- 218 (441)
T ss_dssp EE--------------------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSS------BCEEEEEE--
T ss_pred ec--------------------------CCCccceEECCCCCEEEEEecCCCceEEEeccCcce------EEEEEeCC--
Confidence 22 22367899999999988877553 232233322110 00000000
Q ss_pred CCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCC
Q 048801 448 ENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPP 527 (1715)
Q Consensus 448 ~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~ 527 (1715)
.-..+.+.+++ ++ +..+.++.+.+++......
T Consensus 219 --~p~~~~~~~dG--------------------------k~-~~v~~~~v~vvd~~~~~~v------------------- 250 (441)
T d1qnia2 219 --VERIAAAVKAG--------------------------NF-KTIGDSKVPVVDGRGESEF------------------- 250 (441)
T ss_dssp --HHHHHHHHHTT--------------------------CC-BCCTTCCCCEEECSSSCSS-------------------
T ss_pred --ccceEEEecCC--------------------------CE-EEeCCCCcEEEEcccCCce-------------------
Confidence 00011122222 22 2334466667765443211
Q ss_pred CCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEE-EecCCeEEEEECCCCce--------EEEEecC---CCCeEEEEE
Q 048801 528 LPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA-AIMDCRICVWNAVDGSL--------VHSLTGH---SASSYVLDV 595 (1715)
Q Consensus 528 ~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaT-gs~DGtI~IWDl~sg~~--------l~tL~gH---~~~V~sLaf 595 (1715)
+. ..........+.++|||+++++ +..+++|.|||+.+... ...+.++ .-.....+|
T Consensus 251 ----------~~-~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~f 319 (441)
T d1qnia2 251 ----------TR-YIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTF 319 (441)
T ss_dssp ----------EE-EECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEE
T ss_pred ----------EE-EEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCccccee
Confidence 11 1122334567899999998755 66789999999865221 0111111 122345689
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCC----------CceEEEEE-----cccceEEEEEEcCCCCEEEEEeC
Q 048801 596 HPFNPRIAMSAGYDGRTIVWDIWE----------GTPIRIYE-----IGRFKLVDGKFSPDGTSIVLSDD 650 (1715)
Q Consensus 596 SP~dg~lLaSgs~DGtI~VWDl~t----------gk~l~tl~-----~h~~~V~svafSPDG~~LAsgs~ 650 (1715)
.+ ++..+.+...|..|..|++.. ...+..+. +|...+.+.+|+|||++|++++.
T Consensus 320 d~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 320 DG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp CS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred cC-CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence 88 678888889999999999741 12344443 44444556689999999999954
|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: P300/CAF histone acetyltransferase bromodomain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.5e-12 Score=129.97 Aligned_cols=100 Identities=18% Similarity=0.280 Sum_probs=88.6
Q ss_pred HHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCC
Q 048801 1615 KLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKN 1694 (1715)
Q Consensus 1615 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~ 1694 (1715)
+|...+..+.+.....+.+..|..+++....++|...+..||||+||++||+++.|++++++..||++|++||.+||.++
T Consensus 13 ~l~~~l~~il~~l~~~~~a~~F~~pv~~~~~pdY~~iI~~PmdL~~I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yn~~~ 92 (118)
T d1wuma1 13 QLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPE 92 (118)
T ss_dssp HHHHHHHHHHHHHHHSSSCHHHHSCCCSSSSSSCTTTCSSCCCHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCCCcCcccCCCChhhCcCHHHHcCChhhHHHHHHHhcccccCchHHHHHHHHHHHHHHHHHCCCC
Confidence 34445555554445567788899999888899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhc
Q 048801 1695 AALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1695 ~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
+.|...|+.|.++|.+.+.+
T Consensus 93 s~~~~~A~~l~~~f~~~~~e 112 (118)
T d1wuma1 93 SEYYKCANILEKFFFSKIKE 112 (118)
T ss_dssp SSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998865
|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: CREB-binding protein, CBP species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=5.3e-12 Score=125.12 Aligned_cols=101 Identities=19% Similarity=0.261 Sum_probs=88.4
Q ss_pred HHHHHHhhhHHHhhhhccccchhhhhHHHHH--HhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhh
Q 048801 1611 ESRDKLLSSFNKLEQSVSRKQDYYGIQRLNE--AAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAE 1688 (1715)
Q Consensus 1611 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~ 1688 (1715)
+.|..|+..|++|... ++....|..+++ ....++|...+..|||+.||++||+|+.|++++++..||++|++||.
T Consensus 6 el~~~l~~~l~~l~~~---~p~a~pF~~pvd~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~ 82 (114)
T d3dwya1 6 ELRQALMPTLEALYRQ---DPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAW 82 (114)
T ss_dssp HHHHHHHHHHHHHHTC---TTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---CcCCCccCCCCChhhccCCCHHHHcCCCCCHHHHHHHHHcCccccHHHHHHHHHHHHHHHH
Confidence 4677888888888542 345566777765 33579999999999999999999999999999999999999999999
Q ss_pred hccCCChHHHHHHHHHHHHHHHHhhc
Q 048801 1689 SYFIKNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1689 ~~n~~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
+||.++++|...|+.|.+.|.+.+..
T Consensus 83 ~yN~~~s~~~~~A~~L~~~f~~~~~~ 108 (114)
T d3dwya1 83 LYNRKTSRVYKFCSKLAEVFEQEIDP 108 (114)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998865
|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=5e-12 Score=127.69 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=94.5
Q ss_pred CChHHHHHHhhhHHHhh-hhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q 048801 1608 IDSESRDKLLSSFNKLE-QSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSN 1686 (1715)
Q Consensus 1608 i~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~N 1686 (1715)
|+.+....|-..|+.+. ......++...|..+++....++|...+..|||++||++||+++.|+++.++..||++|++|
T Consensus 2 ~~~~~~~~~~~il~~l~~~~~~~~p~a~pF~~pVd~~~~PdY~~vIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~N 81 (128)
T d1eqfa2 2 LDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILAN 81 (128)
T ss_dssp GGCHHHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHcCCCCChhcCCCCcccCcCHHHHcCCcccHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 34555556677777765 34466677788999998888999999999999999999999999999999999999999999
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1687 AESYFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1687 a~~~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
|..||.+++.+...|+.|.+.|.+.++++
T Consensus 82 a~~yN~~~s~i~~~A~~L~~~~~~~l~~~ 110 (128)
T d1eqfa2 82 SVKYNGPESQYTKTAQEIVNVCYQTLTEY 110 (128)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999988753
|
| >d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.13 E-value=1.1e-11 Score=122.30 Aligned_cols=86 Identities=17% Similarity=0.312 Sum_probs=79.6
Q ss_pred cchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFN 1709 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~ 1709 (1715)
++....|..+++....++|...+..||||+||++||+++.|.+++++..||++|++||.+||.+++.|...|+.|.+.|.
T Consensus 18 ~~~a~pF~~pvd~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~i~~~A~~l~~~f~ 97 (111)
T d1e6ia_ 18 HAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFN 97 (111)
T ss_dssp STTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CCCChhhcCCCCchhCcCHHHHcCCchhHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 35667788888777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q 048801 1710 RTLNKL 1715 (1715)
Q Consensus 1710 ~~i~~~ 1715 (1715)
+.+..|
T Consensus 98 ~~~~~i 103 (111)
T d1e6ia_ 98 NKVKEI 103 (111)
T ss_dssp HHHHTS
T ss_pred HHHHHh
Confidence 988764
|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=3.4e-11 Score=123.29 Aligned_cols=88 Identities=16% Similarity=0.255 Sum_probs=81.1
Q ss_pred cccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHH
Q 048801 1628 SRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDW 1707 (1715)
Q Consensus 1628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~ 1707 (1715)
...+....|..+++....++|...+..||||.||++||+++.|++++++..||++|++||.+||.+++.|...|+.|.+.
T Consensus 39 ~~~~~s~pF~~Pvd~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~ 118 (139)
T d1eqfa1 39 RDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDL 118 (139)
T ss_dssp HTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHH
T ss_pred HcCCCchhhhCCCChhhccCHHHHcCChhhHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 34566777888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC
Q 048801 1708 FNRTLNKL 1715 (1715)
Q Consensus 1708 ~~~~i~~~ 1715 (1715)
|.+.+.++
T Consensus 119 ~~~~~~~~ 126 (139)
T d1eqfa1 119 CDEKLKEK 126 (139)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988653
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.94 E-value=5.1e-10 Score=134.99 Aligned_cols=280 Identities=10% Similarity=0.008 Sum_probs=181.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcEEEEec-CCCCCeEEEEECCCCC--EEEEEeCCC--------
Q 048801 240 RGHRDAVYCAIFDRSGRFVITGS-DDRLVKIWSMETAFCLASCR-GHEGDITDLAVSSNNT--LVASASNDF-------- 307 (1715)
Q Consensus 240 ~GH~~~Vt~VafSpDG~~LaTGS-~DGtIrIWDl~tgk~l~tL~-gHs~~VtsLafSpDg~--lLASGS~DG-------- 307 (1715)
..|.-.+.+..++|||++|++.. .++.|.+||+.++++...+. .+...+..++|+|+|+ |+++.+.+.
T Consensus 68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~ 147 (441)
T d1qnia2 68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT 147 (441)
T ss_dssp CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred cccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence 34666677777889999997665 68899999999999988775 3677899999999998 555555432
Q ss_pred ---------eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCC-CcEEEEecCCCCCcceecCCCCCCCc
Q 048801 308 ---------VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD-GTCRIWDARYSQYSPRIYLPKPPDAI 377 (1715)
Q Consensus 308 ---------tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D-GtVrIWDl~tg~~l~~i~~~~~~~~i 377 (1715)
.+..+|..+......+.. .+....++|+|+++ ++++++.+ ..+..++..+......+..
T Consensus 148 ~~~~~~~~~~~~~iD~~t~~v~~qI~v-~~~p~~v~~spdGk---~a~vt~~nse~~~~id~~t~~~~d~i~v------- 216 (441)
T d1qnia2 148 DFSLDNSYTMFTAIDAETMDVAWQVIV-DGNLDNTDADYTGK---YATSTCYNSERAVDLAGTMRNDRDWVVV------- 216 (441)
T ss_dssp CCCGGGEEEEEEEEETTTCSEEEEEEE-SSCCCCEEECSSSS---EEEEEESCTTCCSSHHHHTCSSBCEEEE-------
T ss_pred ccccccccceEEeecCccceeeEEEec-CCCccceEECCCCC---EEEEEecCCCceEEEeccCcceEEEEEe-------
Confidence 235678888777776663 34578899999998 55554433 3343344433332221111
Q ss_pred cCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEc
Q 048801 378 TGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS 457 (1715)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafs 457 (1715)
...-..++++++|+++.+++ ++.+.|+...... .+..+..... ...+.++
T Consensus 217 -------------------~n~p~~~~~~~dGk~~~v~~-~~v~vvd~~~~~~---------v~~~IPvgks-PhGv~vS 266 (441)
T d1qnia2 217 -------------------FNVERIAAAVKAGNFKTIGD-SKVPVVDGRGESE---------FTRYIPVPKN-PHGLNTS 266 (441)
T ss_dssp -------------------EEHHHHHHHHHTTCCBCCTT-CCCCEEECSSSCS---------SEEEECCBSS-CCCEEEC
T ss_pred -------------------CCccceEEEecCCCEEEeCC-CCcEEEEcccCCc---------eEEEEeCCCC-ccCceEC
Confidence 01112344678998877654 6777777765432 2334444433 4678999
Q ss_pred cCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC
Q 048801 458 GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537 (1715)
Q Consensus 458 pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 537 (1715)
|+| ...++++..+++|.+||+.+-... +.... ..
T Consensus 267 PDG-------------------------kyl~~~~~~~~tvsv~d~~k~~~~--~~~~~-------------------~~ 300 (441)
T d1qnia2 267 PDG-------------------------KYFIANGKLSPTVSVIAIDKLDDL--FEDKI-------------------EL 300 (441)
T ss_dssp TTS-------------------------CEEEEECTTSSBEEEEEGGGHHHH--TTTSS-------------------CG
T ss_pred CCC-------------------------CEEEEeCCcCCcEEEEEeehhhhH--hhccC-------------------Cc
Confidence 998 235677889999999998752210 00000 00
Q ss_pred ccccc---CCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC----------CceEEEE-----ecCCCCeEEEEEccCC
Q 048801 538 RQRLL---PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD----------GSLVHSL-----TGHSASSYVLDVHPFN 599 (1715)
Q Consensus 538 ~~~l~---~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s----------g~~l~tL-----~gH~~~V~sLafSP~d 599 (1715)
...+. ....+....+|+++|..+.+...|..|..|++.. ...+..+ .||...+.+.+++| +
T Consensus 301 ~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~p-d 379 (441)
T d1qnia2 301 RDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDA-D 379 (441)
T ss_dssp GGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC-C
T ss_pred ceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCC-C
Confidence 00010 1112345568999999999999999999999742 1234444 46776677778999 8
Q ss_pred CcEEEEEe
Q 048801 600 PRIAMSAG 607 (1715)
Q Consensus 600 g~lLaSgs 607 (1715)
+++|++++
T Consensus 380 Gk~l~s~~ 387 (441)
T d1qnia2 380 GKWLVVLS 387 (441)
T ss_dssp CCEEEEEE
T ss_pred CcEEEecC
Confidence 89999984
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.71 E-value=1.1e-06 Score=103.38 Aligned_cols=311 Identities=9% Similarity=0.037 Sum_probs=164.6
Q ss_pred EEEEeC--CCcEEEE--eCCCCcEE--EE-ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe--CCCC
Q 048801 258 VITGSD--DRLVKIW--SMETAFCL--AS-CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR--GHTG 328 (1715)
Q Consensus 258 LaTGS~--DGtIrIW--Dl~tgk~l--~t-L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~--gH~~ 328 (1715)
|+.|+. .+.|.++ |.+++++. .. .......+.-|+|++++++|+++.. +.+..|.+.....+..+. ....
T Consensus 5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~ 83 (365)
T d1jofa_ 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGG 83 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCS
T ss_pred EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCC
Confidence 455543 4455444 44455432 22 1234555677999999999988765 567778765432222221 1233
Q ss_pred CeEEEEecCCCCcceEEEEe-cCCCcEEEEecCCCCC-cceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEc
Q 048801 329 AVTAIAFSPRPSAIYQLLSS-SDDGTCRIWDARYSQY-SPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYN 406 (1715)
Q Consensus 329 ~VtsLafSPdg~~~~~LaSg-S~DGtVrIWDl~tg~~-l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafS 406 (1715)
....++++++++.. +++++ ...+.|..+.+..... ...+.... .....+. . ..........+.+++|+
T Consensus 84 ~p~~v~~~~~~~~~-~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~-~~~~~q~~~h~h~v~~s 153 (365)
T d1jofa_ 84 HPRANDADTNTRAI-FLLAAKQPPYAVYANPFYKFAGYGNVFSVSE-TGKLEKN-------V-QNYEYQENTGIHGMVFD 153 (365)
T ss_dssp SGGGGCTTSCCEEE-EEEECSSTTCCEEEEEESSSCCEEEEEEECT-TCCEEEE-------E-EEEECCTTCCEEEEEEC
T ss_pred CcEEEEECCCCCEE-EEEEecCCCCEEEEeEccCCCCcceeEeeee-cceecCc-------c-cCcccCCCCcceEEEEC
Confidence 45677888888643 23333 3456676665432211 11111100 0000000 0 00000112347899999
Q ss_pred cCCCeEEEecC-CCeEEEEeCCCCCccCCCCCceeeee--ecCCCCCeeEEEEccCcccccccccccccccccccccCCc
Q 048801 407 ANGTVFVTGSS-DTFARVWSACKSSVEDSEQPIHELDV--LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW 483 (1715)
Q Consensus 407 pdG~~LatGs~-DG~IrVWDl~t~~~~~~~~~~~~l~~--l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~ 483 (1715)
|+|+++++++. ...|.+|+...... ...... ..........++|+|++
T Consensus 154 PdG~~l~v~d~g~d~v~~~~~~~~g~------~~~~~~~~~~~~g~gPr~i~f~pdg----------------------- 204 (365)
T d1jofa_ 154 PTETYLYSADLTANKLWTHRKLASGE------VELVGSVDAPDPGDHPRWVAMHPTG----------------------- 204 (365)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSC------EEEEEEEECSSTTCCEEEEEECTTS-----------------------
T ss_pred CCCCEEEEeeCCCCEEEEEEccCCCc------eeeccceeecCCCCceEEEEECCCC-----------------------
Confidence 99998777754 45788887643211 111111 12234567889999987
Q ss_pred ccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEE
Q 048801 484 FCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAA 563 (1715)
Q Consensus 484 ~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTg 563 (1715)
....++...+++|.+|++.......... .....+. .... ................+.++|||++|+++
T Consensus 205 --~~~yv~~e~~~~V~v~~~~~~~~~~~~~--~~~~~~~--~~~~------~~~~~~~~~~~~~~~~i~~spdG~~lyvs 272 (365)
T d1jofa_ 205 --NYLYALMEAGNRICEYVIDPATHMPVYT--HHSFPLI--PPGI------PDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp --SEEEEEETTTTEEEEEEECTTTCCEEEE--EEEEESS--CTTC------CCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred --ceEEEeccCCCEEEEEEecCCCceEEEE--eeeeccc--cccc------cccccccccccCCccceEECCCCCEEEEE
Confidence 2455777789999999987644221110 0001000 0000 00001112233446678999999999876
Q ss_pred ec------CCeEEEEECCCCceEEE-E-----ecCCCCeEEEEEccCCCc-EEEEEeCCCcEEEEECCCC
Q 048801 564 IM------DCRICVWNAVDGSLVHS-L-----TGHSASSYVLDVHPFNPR-IAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 564 s~------DGtI~IWDl~sg~~l~t-L-----~gH~~~V~sLafSP~dg~-lLaSgs~DGtI~VWDl~tg 620 (1715)
.. .+.|.+|++.....+.. . ........+++++|.+++ ++++...++.|.||++...
T Consensus 273 nr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred cccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 43 22377777754322221 1 123344577999985555 5555567899999987544
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=3.9e-06 Score=92.67 Aligned_cols=239 Identities=9% Similarity=0.008 Sum_probs=141.3
Q ss_pred cEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCC---eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcc
Q 048801 266 LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDF---VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAI 342 (1715)
Q Consensus 266 tIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DG---tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~ 342 (1715)
.|.|-|.. |.....+..+...+...+|||||+.||...... .+.+.+...+. ...+..+...+....|+|++..
T Consensus 20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~- 96 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVASFPRHNGAPAFSPDGSK- 96 (269)
T ss_dssp EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEEEECCSSCEEEEEECTTSSE-
T ss_pred EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc-eeEEeeeecccccceecCCCCe-
Confidence 47777766 444444555677889999999999999775543 46666765554 4455567888999999999983
Q ss_pred eEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEE-ecCCCe-
Q 048801 343 YQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVT-GSSDTF- 420 (1715)
Q Consensus 343 ~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~Lat-Gs~DG~- 420 (1715)
+++....++...++........... ............+++++..++. ...+|.
T Consensus 97 -i~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 151 (269)
T d2hqsa1 97 -LAFALSKTGSLNLYVMDLASGQIRQ------------------------VTDGRSNNTEPTWFPDSQNLAFTSDQAGRP 151 (269)
T ss_dssp -EEEEECTTSSCEEEEEETTTCCEEE------------------------CCCCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred -eeEeeecCCccceeeccccccccee------------------------eeeccccccccccccccccceecccccCCc
Confidence 2333333444333332221111100 0011222345567777665443 334554
Q ss_pred -EEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEE
Q 048801 421 -ARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAI 499 (1715)
Q Consensus 421 -IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIr 499 (1715)
|.++++.... ...+..+........|+|++ ...+.+....|...
T Consensus 152 ~i~~~~~~~~~----------~~~~~~~~~~~~~~~~spdg-------------------------~~~~~~~~~~~~~~ 196 (269)
T d2hqsa1 152 QVYKVNINGGA----------PQRITWEGSQNQDADVSSDG-------------------------KFMVMVSSNGGQQH 196 (269)
T ss_dssp EEEEEETTSSC----------CEECCCSSSEEEEEEECTTS-------------------------SEEEEEEECSSCEE
T ss_pred eEeeeeccccc----------ceeeeccccccccccccccc-------------------------ceeEEEeecCCcee
Confidence 4444554321 22334455566778899887 23444444555555
Q ss_pred EEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec---CCeEEEEECCC
Q 048801 500 IWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM---DCRICVWNAVD 576 (1715)
Q Consensus 500 IWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~---DGtI~IWDl~s 576 (1715)
+|...... ....+...........|||||+.|+..+. ...|+++++..
T Consensus 197 i~~~~~~~-----------------------------~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg 247 (269)
T d2hqsa1 197 IAKQDLAT-----------------------------GGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG 247 (269)
T ss_dssp EEEEETTT-----------------------------CCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred eeEeeccc-----------------------------ccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 55443211 01122334455677899999999986554 34689999866
Q ss_pred CceEEEEecCCCCeEEEEEcc
Q 048801 577 GSLVHSLTGHSASSYVLDVHP 597 (1715)
Q Consensus 577 g~~l~tL~gH~~~V~sLafSP 597 (1715)
+. ...+....+.+...+|||
T Consensus 248 ~~-~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 248 RF-KARLPATDGQVKFPAWSP 267 (269)
T ss_dssp CC-EEECCCSSSEEEEEEECC
T ss_pred CC-EEEEeCCCCcEEeEEeCC
Confidence 54 456777777888899998
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.67 E-value=3.4e-06 Score=96.21 Aligned_cols=251 Identities=13% Similarity=0.032 Sum_probs=158.3
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
.+.+..+.... .+..++++|||+++++...++.|..|+... . ...+......+.+++|++||+++++...++.+.+|
T Consensus 18 ~~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~ 94 (302)
T d2p4oa1 18 AKIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVV 94 (302)
T ss_dssp EEEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred ccEEEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEE
Confidence 45566664333 588999999999999999999999988653 3 33445566789999999999999999888889888
Q ss_pred ECCCCCc-eEEEe--CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCC
Q 048801 313 RLPDGLP-ISVLR--GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 313 Dl~tg~~-l~~L~--gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
+...... ...+. ........+++.+++. ++++.+.++.+..++...+........+.. .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~---~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~---------------~ 156 (302)
T d2p4oa1 95 SLVKSDGTVETLLTLPDAIFLNGITPLSDTQ---YLTADSYRGAIWLIDVVQPSGSIWLEHPML---------------A 156 (302)
T ss_dssp EEECTTSCEEEEEECTTCSCEEEEEESSSSE---EEEEETTTTEEEEEETTTTEEEEEEECGGG---------------S
T ss_pred EecccccceeeccccCCccccceeEEccCCC---EEeeccccccceeeeccCCcceeEecCCcc---------------c
Confidence 8754322 22221 2445688999999986 677778888888888876542211111000 0
Q ss_pred CCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccc
Q 048801 390 SSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSD 469 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~ 469 (1715)
.............+++.. +.++++.+..+.|..+++..... ....... ........++|.+++
T Consensus 157 ~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~------~~~~~~~-~~~~~pdgia~d~dG--------- 219 (302)
T d2p4oa1 157 RSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDK------PGEPEIF-VEQTNIDDFAFDVEG--------- 219 (302)
T ss_dssp CSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSC------BCCCEEE-EESCCCSSEEEBTTC---------
T ss_pred eeeccCcccccccccccC-CceeeecCCCCeEEecccccccc------ccccccc-cCCCCCcceEECCCC---------
Confidence 000111122345666653 34666667788888888765321 1111111 122345568888876
Q ss_pred cccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCee
Q 048801 470 AFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVN 549 (1715)
Q Consensus 470 ~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vt 549 (1715)
.++++...++.|..++...... .+..........+
T Consensus 220 -----------------~l~va~~~~~~V~~i~p~G~~~----------------------------~~~~~~~~~~~pt 254 (302)
T d2p4oa1 220 -----------------NLYGATHIYNSVVRIAPDRSTT----------------------------IIAQAEQGVIGST 254 (302)
T ss_dssp -----------------CEEEECBTTCCEEEECTTCCEE----------------------------EEECGGGTCTTEE
T ss_pred -----------------CEEEEEcCCCcEEEECCCCCEE----------------------------EEEecCCCCCCce
Confidence 6777777888888887653110 0011112234578
Q ss_pred EEEe---CCCCCEEEEEecC
Q 048801 550 MIVW---SLDNRFVLAAIMD 566 (1715)
Q Consensus 550 slaf---SPDG~~LaTgs~D 566 (1715)
+++| ++|++.|++++..
T Consensus 255 ~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 255 AVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp EEEECCSTTTTTEEEEEECT
T ss_pred EEEEcCCCCCCCEEEEECCC
Confidence 9999 6788888776554
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.63 E-value=2.7e-06 Score=97.06 Aligned_cols=250 Identities=10% Similarity=-0.019 Sum_probs=153.3
Q ss_pred CCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCC
Q 048801 273 ETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG 352 (1715)
Q Consensus 273 ~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DG 352 (1715)
...+.+..+... ..+..++++|||+++++...+++|..|+.. +. ...+......+.+++|.+++. ++++...++
T Consensus 16 ~~~~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~---l~v~~~~~~ 89 (302)
T d2p4oa1 16 APAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGD---LVATGWNAD 89 (302)
T ss_dssp CCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSC---EEEEEECTT
T ss_pred CcccEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCC---eEEEecCCc
Confidence 344555555432 258899999999999999989999888854 43 444555778899999999987 777777788
Q ss_pred cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCcc
Q 048801 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVE 432 (1715)
Q Consensus 353 tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~ 432 (1715)
.+.+|+............. .........+++.++|+++++.+.++.+..++...+...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~ 147 (302)
T d2p4oa1 90 SIPVVSLVKSDGTVETLLT----------------------LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 147 (302)
T ss_dssp SCEEEEEECTTSCEEEEEE----------------------CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEEEecccccceeeccc----------------------cCCccccceeEEccCCCEEeeccccccceeeeccCCcce
Confidence 8888876543211111000 011234788999999999999888888888887654210
Q ss_pred CCCC-CceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcc
Q 048801 433 DSEQ-PIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGK 511 (1715)
Q Consensus 433 ~~~~-~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~ 511 (1715)
.... +................+.+.. ...+++.+..+.|..+++........
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~ngi~~~~---------------------------~~l~~~~~~~~~i~~~~~~~~~~~~~ 200 (302)
T d2p4oa1 148 IWLEHPMLARSNSESVFPAANGLKRFG---------------------------NFLYVSNTEKMLLLRIPVDSTDKPGE 200 (302)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEEEEET---------------------------TEEEEEETTTTEEEEEEBCTTSCBCC
T ss_pred eEecCCccceeeccCcccccccccccC---------------------------CceeeecCCCCeEEeccccccccccc
Confidence 0000 0000000011112334444443 24677778888888887764321110
Q ss_pred cccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe--cCCCC
Q 048801 512 VGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT--GHSAS 589 (1715)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~--gH~~~ 589 (1715)
. ...........++++++|+++++...++.|..++.. |+...... ..-..
T Consensus 201 ~---------------------------~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~ 252 (302)
T d2p4oa1 201 P---------------------------EIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIG 252 (302)
T ss_dssp C---------------------------EEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTT
T ss_pred c---------------------------ccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCC
Confidence 0 001112235569999999988888888999999764 55433332 34455
Q ss_pred eEEEEE---ccCCCcEEEEE
Q 048801 590 SYVLDV---HPFNPRIAMSA 606 (1715)
Q Consensus 590 V~sLaf---SP~dg~lLaSg 606 (1715)
.++++| ++ +++.|+.+
T Consensus 253 pt~vafg~~~~-D~~~Lyvt 271 (302)
T d2p4oa1 253 STAVAFGQTEG-DCTAIYVV 271 (302)
T ss_dssp EEEEEECCSTT-TTTEEEEE
T ss_pred ceEEEEcCCCC-CCCEEEEE
Confidence 789999 55 44444333
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.63 E-value=6.6e-06 Score=90.76 Aligned_cols=240 Identities=12% Similarity=0.059 Sum_probs=136.9
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEe-cCC--CcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS-SDD--GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSg-S~D--GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
.|.|.|.. |.....+..+...+...+|||||+ .|+.. ... ..+.+.+...+.....
T Consensus 20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk---~IAf~~~~~~~~~~~~~~~~~~~~~~~----------------- 78 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGS---KLAYVTFESGRSALVIQTLANGAVRQV----------------- 78 (269)
T ss_dssp EEEEEETT-SCSCEEEEEESSCEEEEEECTTSS---EEEEEECTTSSCEEEEEETTTCCEEEE-----------------
T ss_pred EEEEEcCC-CCCcEEEecCCCceeeeEECCCCC---EEEEEEeeccCcceeeeecccCceeEE-----------------
Confidence 57777865 555555555678899999999998 45433 222 2355555544432111
Q ss_pred CCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccc
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVAS 463 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as 463 (1715)
..+.....+..|+|+|..++.... .+...++...... .................+++.+
T Consensus 79 ---------~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~--- 138 (269)
T d2hqsa1 79 ---------ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS--------GQIRQVTDGRSNNTEPTWFPDS--- 138 (269)
T ss_dssp ---------ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT--------CCEEECCCCSSCEEEEEECTTS---
T ss_pred ---------eeeecccccceecCCCCeeeEeeecCCccceeeccccc--------ccceeeeecccccccccccccc---
Confidence 112445778899999998876543 3333333222111 0111112222233334444433
Q ss_pred cccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccC
Q 048801 464 RSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLP 543 (1715)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~ 543 (1715)
...+++...+|...+|..... ......+..
T Consensus 139 ----------------------~~~~~~~~~~g~~~i~~~~~~----------------------------~~~~~~~~~ 168 (269)
T d2hqsa1 139 ----------------------QNLAFTSDQAGRPQVYKVNIN----------------------------GGAPQRITW 168 (269)
T ss_dssp ----------------------SEEEEEECTTSSCEEEEEETT----------------------------SSCCEECCC
T ss_pred ----------------------ccceecccccCCceEeeeecc----------------------------cccceeeec
Confidence 245566666665555533211 011122233
Q ss_pred CCCCeeEEEeCCCCCEEEEEecCC---eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeC--CCcEEEEECC
Q 048801 544 TPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGY--DGRTIVWDIW 618 (1715)
Q Consensus 544 h~~~VtslafSPDG~~LaTgs~DG---tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~--DGtI~VWDl~ 618 (1715)
.........|+|+++.++..+.++ .|.+.+...+.. .+..+........|+|++..++.+... ...|.+|++.
T Consensus 169 ~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d 246 (269)
T d2hqsa1 169 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 246 (269)
T ss_dssp SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred ccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 445667789999999998876654 455556555443 344456667888999955555555443 3468899997
Q ss_pred CCceEEEEEcccceEEEEEEcCC
Q 048801 619 EGTPIRIYEIGRFKLVDGKFSPD 641 (1715)
Q Consensus 619 tgk~l~tl~~h~~~V~svafSPD 641 (1715)
.+.. ..+....+.+...+|||-
T Consensus 247 g~~~-~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 247 GRFK-ARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp SCCE-EECCCSSSEEEEEEECCC
T ss_pred CCCE-EEEeCCCCcEEeEEeCCC
Confidence 6554 445556777888999983
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.59 E-value=3.8e-06 Score=93.66 Aligned_cols=243 Identities=11% Similarity=-0.007 Sum_probs=148.1
Q ss_pred EcCCCCC--eEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC
Q 048801 239 LRGHRDA--VYCAIFDRSGRFVITG-SDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 239 L~GH~~~--Vt~VafSpDG~~LaTG-S~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~ 315 (1715)
+.|+... =..|+++++|++.++. +..+.|..++...........+-......|+++++|.++++....+.|++++-.
T Consensus 7 ~~~~~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~ 86 (260)
T d1rwia_ 7 FTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGS 86 (260)
T ss_dssp CCSCCSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTC
T ss_pred cccCCCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeec
Confidence 3444433 3799999999966655 455777777665443332222223345788999999988877776667666544
Q ss_pred CCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCC
Q 048801 316 DGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL 395 (1715)
Q Consensus 316 tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~ 395 (1715)
++..+.... ......+|++.+++. ++++-..+..+..++...... ..... .
T Consensus 87 ~~~~~~~~~-~~~~p~~iavd~~g~---i~v~d~~~~~~~~~~~~~~~~-~~~~~------------------------~ 137 (260)
T d1rwia_ 87 NNQTVLPFD-GLNYPEGLAVDTQGA---VYVADRGNNRVVKLAAGSKTQ-TVLPF------------------------T 137 (260)
T ss_dssp SCCEECCCC-SCCSEEEEEECTTCC---EEEEEGGGTEEEEECTTCSSC-EECCC------------------------C
T ss_pred cceeeeeee-eeeecccccccccce---eEeecccccccccccccccee-eeeee------------------------c
Confidence 444332222 235678999999876 555555566666666543221 11000 0
Q ss_pred CCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccc
Q 048801 396 QSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 396 h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
.......++++++|+++++...++.|..++...... .......-.....|++.+++
T Consensus 138 ~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~---------~~~~~~~~~~p~gi~~d~~g--------------- 193 (260)
T d1rwia_ 138 GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ---------VVLPFTDITAPWGIAVDEAG--------------- 193 (260)
T ss_dssp SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE---------EECCCSSCCSEEEEEECTTC---------------
T ss_pred ccCCcceeeecCCCCEeeecccccccccccccccee---------eeeeccccCCCccceeeeee---------------
Confidence 012346899999999988888889999999865321 11112333456788888775
Q ss_pred cccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC
Q 048801 476 VPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL 555 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP 555 (1715)
.++++....+.|..++....... ......-.....|++++
T Consensus 194 -----------~l~vsd~~~~~i~~~~~~~~~~~-----------------------------~~~~~~~~~P~~i~~d~ 233 (260)
T d1rwia_ 194 -----------TVYVTEHNTNQVVKLLAGSTTST-----------------------------VLPFTGLNTPLAVAVDS 233 (260)
T ss_dssp -----------CEEEEETTTTEEEEECTTCSCCE-----------------------------ECCCCSCCCEEEEEECT
T ss_pred -----------eeeeeecCCCEEEEEeCCCCeEE-----------------------------EEccCCCCCeEEEEEeC
Confidence 67777777888888866532100 00001123457899999
Q ss_pred CCCEEEEEecCCeEEEEEC
Q 048801 556 DNRFVLAAIMDCRICVWNA 574 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl 574 (1715)
+|.++++-..+++|+.++.
T Consensus 234 ~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 234 DRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp TCCEEEEEGGGTEEEEECC
T ss_pred CCCEEEEECCCCEEEEEeC
Confidence 9988887677777776554
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.54 E-value=5.8e-06 Score=92.18 Aligned_cols=238 Identities=10% Similarity=0.000 Sum_probs=146.5
Q ss_pred CCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc
Q 048801 328 GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA 407 (1715)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp 407 (1715)
..-.+|++.+++.. +++..+..+.+..++...... .... .........+++++
T Consensus 14 ~~P~~vavd~dG~i--~v~~~~~~~~i~~~~~~~~~~--~~~~-----------------------~~~~~~p~gvav~~ 66 (260)
T d1rwia_ 14 LSPSGVAVDSAGNV--YVTSEGMYGRVVKLATGSTGT--TVLP-----------------------FNGLYQPQGLAVDG 66 (260)
T ss_dssp CCEEEEEECTTCCE--EEEECSSSCEEEEEC----CE--EECC-----------------------CCSCCSCCCEEECT
T ss_pred CCCCEEEEcCCCCE--EEEEcCCCCEEEEEcCCCceE--EEec-----------------------cCCccCceEEEEcC
Confidence 34589999999861 444456667777776543321 1100 00012246789999
Q ss_pred CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCc
Q 048801 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHD 487 (1715)
Q Consensus 408 dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~ 487 (1715)
+|.++++....+.+++++..+.. .+... ........+++.+++ +
T Consensus 67 ~g~i~v~d~~~~~i~~~~~~~~~---------~~~~~-~~~~~p~~iavd~~g--------------------------~ 110 (260)
T d1rwia_ 67 AGTVYVTDFNNRVVTLAAGSNNQ---------TVLPF-DGLNYPEGLAVDTQG--------------------------A 110 (260)
T ss_dssp TCCEEEEETTTEEEEECTTCSCC---------EECCC-CSCCSEEEEEECTTC--------------------------C
T ss_pred CCCEEEeeeeeceeeeeeeccce---------eeeee-eeeeecccccccccc--------------------------e
Confidence 99988888877777776554321 11111 122456778887765 4
Q ss_pred eEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC
Q 048801 488 NIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC 567 (1715)
Q Consensus 488 ~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG 567 (1715)
++++-.....+..++....... ............++++++|+++++...++
T Consensus 111 i~v~d~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~p~~i~~~~~g~~~v~~~~~~ 161 (260)
T d1rwia_ 111 VYVADRGNNRVVKLAAGSKTQT-----------------------------VLPFTGLNDPDGVAVDNSGNVYVTDTDNN 161 (260)
T ss_dssp EEEEEGGGTEEEEECTTCSSCE-----------------------------ECCCCSCCSCCEEEECTTCCEEEEEGGGT
T ss_pred eEeeccccccccccccccceee-----------------------------eeeecccCCcceeeecCCCCEeeeccccc
Confidence 5555555666666655431100 00001122346789999999888888889
Q ss_pred eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE-cccceEEEEEEcCCCCEEE
Q 048801 568 RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE-IGRFKLVDGKFSPDGTSIV 646 (1715)
Q Consensus 568 tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~-~h~~~V~svafSPDG~~LA 646 (1715)
.|..++.............-.....|++.+ ++.++++....+.|..++..... ...+. ..-.....++++++|.+++
T Consensus 162 ~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~v 239 (260)
T d1rwia_ 162 RVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYV 239 (260)
T ss_dssp EEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEE
T ss_pred cccccccccceeeeeeccccCCCccceeee-eeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEE
Confidence 999999765544433334556678999998 66888888788889888765443 22222 2223567899999998777
Q ss_pred EEeCCCeEEEEEC
Q 048801 647 LSDDVGQIYLLNT 659 (1715)
Q Consensus 647 sgs~DG~I~IWdl 659 (1715)
+-..+++|+.++.
T Consensus 240 ad~~~~rI~~i~~ 252 (260)
T d1rwia_ 240 ADRGNDRVVKLTS 252 (260)
T ss_dssp EEGGGTEEEEECC
T ss_pred EECCCCEEEEEeC
Confidence 7666777776654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=5.7e-06 Score=100.57 Aligned_cols=354 Identities=11% Similarity=0.088 Sum_probs=184.5
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCC---CCCeEEEEECCCCCEEEEEeC---------CCeeEEEECCCCC
Q 048801 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGH---EGDITDLAVSSNNTLVASASN---------DFVIRVWRLPDGL 318 (1715)
Q Consensus 251 fSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gH---s~~VtsLafSpDg~lLASGS~---------DGtIrVWDl~tg~ 318 (1715)
|.+++.++.. ..+|.|.+||+.+++....+..+ .-.+....||||+++|+.+.. .+.+.|+|+.++.
T Consensus 24 W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~ 102 (465)
T d1xfda1 24 WISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD 102 (465)
T ss_dssp BSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred EeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence 6677766654 45788999999988764444432 236778889999999887643 5678999999887
Q ss_pred ceEEEe--CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC
Q 048801 319 PISVLR--GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396 (1715)
Q Consensus 319 ~l~~L~--gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h 396 (1715)
...... .....+....|||+|.. |+-.. ++.|.+.+..++................|.... ......
T Consensus 103 ~~~l~~~~~~~~~l~~~~wSPDG~~---iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~------vyeee~- 171 (465)
T d1xfda1 103 PQSLDPPEVSNAKLQYAGWGPKGQQ---LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDW------LYEEEI- 171 (465)
T ss_dssp CEECCCTTCCSCCCSBCCBCSSTTC---EEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCH------HHHHTT-
T ss_pred eeeccCccCCccccceeeeccCCce---EEEEe-cceEEEEecCCCceEEEecccCcceeeccccch------hhhhhh-
Confidence 644322 23345667899999984 44433 567888888766544332211110000010000 000000
Q ss_pred CcceeEEEEccCCCeEEEecC-CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccc
Q 048801 397 SHQILCCAYNANGTVFVTGSS-DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 397 ~~~VtslafSpdG~~LatGs~-DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
...-..+-|||||+.||.... +..|..+.+.... ......+..+.+-..|
T Consensus 172 ~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~--------------~~~~p~~~~~~Yp~~G--------------- 222 (465)
T d1xfda1 172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT--------------GSIYPTVKPYHYPKAG--------------- 222 (465)
T ss_dssp SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS--------------SSSSCCCEEEECCBTT---------------
T ss_pred ccccceEEECCCCCeEEEEEecccccceeeccccc--------------ccccceeeeeeccccC---------------
Confidence 011246789999999998653 3334444332100 0001112222221111
Q ss_pred cccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC
Q 048801 476 VPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL 555 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP 555 (1715)
.. .....+.++|+.++...... . +.........-+..+.|++
T Consensus 223 -----------~~----np~~~l~v~d~~~~~~~~~~----------~-------------~~~~~~~~~~y~~~~~W~~ 264 (465)
T d1xfda1 223 -----------SE----NPSISLHVIGLNGPTHDLEM----------M-------------PPDDPRMREYYITMVKWAT 264 (465)
T ss_dssp -----------SC----CCEEEEEEEESSSSCCCEEC----------C-------------CCCCGGGSSEEEEEEEESS
T ss_pred -----------CC----CCceeEEEEecCCCcEEEEE----------e-------------ccCcCccccceeeeeEEcC
Confidence 00 01124667777653311000 0 0000111233477899999
Q ss_pred CCCEEEEEec-C---CeEEEEECCCCceEEEEecCC-CCe----EEEEEccCCCcEEEE--EeCCC--cEEEEEC-----
Q 048801 556 DNRFVLAAIM-D---CRICVWNAVDGSLVHSLTGHS-ASS----YVLDVHPFNPRIAMS--AGYDG--RTIVWDI----- 617 (1715)
Q Consensus 556 DG~~LaTgs~-D---GtI~IWDl~sg~~l~tL~gH~-~~V----~sLafSP~dg~lLaS--gs~DG--tI~VWDl----- 617 (1715)
++++++.... + ..|.++|..+|++...+..+. +.| ....|++++..++.. .-.+| .+....+
T Consensus 265 d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~ 344 (465)
T d1xfda1 265 STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQP 344 (465)
T ss_dssp SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSC
T ss_pred CCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccc
Confidence 9987766443 2 268899999998776654322 222 345788866554322 22233 2333322
Q ss_pred -CCCceEEEEEcccceEEEE-EEcCCCCEEEE-EeCC--CeEEEEE--CCCCcccc---------ccccceeecCCCccE
Q 048801 618 -WEGTPIRIYEIGRFKLVDG-KFSPDGTSIVL-SDDV--GQIYLLN--TGQGESQK---------DAKYDQFFLGDYRPL 681 (1715)
Q Consensus 618 -~tgk~l~tl~~h~~~V~sv-afSPDG~~LAs-gs~D--G~I~IWd--l~tGe~~k---------~~~~~~~fs~D~r~L 681 (1715)
..+..+..+..+.-.|..+ +|..++..|.. +..+ +.-+||. +..+...+ ..-+...|++|+..+
T Consensus 345 ~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~ 424 (465)
T d1xfda1 345 NSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFF 424 (465)
T ss_dssp CSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEE
T ss_pred cCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEE
Confidence 1344444455455567664 79999887764 4332 2334444 43332111 011345677777766
Q ss_pred EE
Q 048801 682 IR 683 (1715)
Q Consensus 682 ~~ 683 (1715)
+.
T Consensus 425 v~ 426 (465)
T d1xfda1 425 LL 426 (465)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.51 E-value=1.6e-05 Score=91.32 Aligned_cols=254 Identities=10% Similarity=0.029 Sum_probs=153.7
Q ss_pred CCeEEEEECCCCCEEEEEeC-------CCeeEEEECCCCCceEEEeCC----CCCeEEEEecCCCCcceEEEEecCCCcE
Q 048801 286 GDITDLAVSSNNTLVASASN-------DFVIRVWRLPDGLPISVLRGH----TGAVTAIAFSPRPSAIYQLLSSSDDGTC 354 (1715)
Q Consensus 286 ~~VtsLafSpDg~lLASGS~-------DGtIrVWDl~tg~~l~~L~gH----~~~VtsLafSPdg~~~~~LaSgS~DGtV 354 (1715)
...-.++|.++|+++++... +|.|..||..++......... .+.-..|+|.+++. .|+++.....|
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~---~l~vad~~~~i 94 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN---QLFVADMRLGL 94 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS---EEEEEETTTEE
T ss_pred CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCC---EEEEEECCCeE
Confidence 34567899999998876433 467888998877654433221 23457899999987 56666666678
Q ss_pred EEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC---------------CC
Q 048801 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS---------------DT 419 (1715)
Q Consensus 355 rIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~---------------DG 419 (1715)
..++........ +.... .+ ..-.....+++.++|.+.++-.. .|
T Consensus 95 ~~~~~~g~~~~~-~~~~~-----~g---------------~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G 153 (314)
T d1pjxa_ 95 LVVQTDGTFEEI-AKKDS-----EG---------------RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EEEETTSCEEEC-CSBCT-----TS---------------CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EEEeCCCcEEEE-Eeccc-----cc---------------cccCCCcEEEECCCCCEEEecCccCcccccccceeccCCc
Confidence 888876543111 00000 00 00123577899999988876432 22
Q ss_pred eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEE
Q 048801 420 FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAI 499 (1715)
Q Consensus 420 ~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIr 499 (1715)
.|..++... + ...+...-..-+.++|++++... ...++++-+..+.|.
T Consensus 154 ~v~~~~~dg-~----------~~~~~~~~~~pNGi~~~~d~d~~---------------------~~~lyv~d~~~~~i~ 201 (314)
T d1pjxa_ 154 SIYCFTTDG-Q----------MIQVDTAFQFPNGIAVRHMNDGR---------------------PYQLIVAETPTKKLW 201 (314)
T ss_dssp EEEEECTTS-C----------EEEEEEEESSEEEEEEEECTTSC---------------------EEEEEEEETTTTEEE
T ss_pred eEEEEeecC-c----------eeEeeCCcceeeeeEECCCCCcc---------------------eeEEEEEeecccceE
Confidence 333333221 0 11111112233567777653000 012456667788888
Q ss_pred EEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccC-CCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc
Q 048801 500 IWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLP-TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS 578 (1715)
Q Consensus 500 IWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~-h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~ 578 (1715)
.|++....... .. ..+ ..+.. .......+++..+|++.++....+.|.+||...+.
T Consensus 202 ~~d~~~~g~~~---~~-~~~-------------------~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~ 258 (314)
T d1pjxa_ 202 SYDIKGPAKIE---NK-KVW-------------------GHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp EEEEEETTEEE---EE-EEE-------------------EECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS
T ss_pred EeeccCccccc---ee-eEE-------------------EEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCE
Confidence 88875321110 00 000 00000 12235679999999998888888999999998888
Q ss_pred eEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 579 LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 579 ~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
.+..+.......++++|.|++..++++.+.+|+|...++.
T Consensus 259 ~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 259 PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 8888877777889999999555678888888988888864
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.51 E-value=3.9e-05 Score=86.17 Aligned_cols=241 Identities=11% Similarity=0.122 Sum_probs=158.4
Q ss_pred CeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCC------CCCeEEEEecCCCCcceEEEEecCCCcEEEEecC
Q 048801 287 DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGH------TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 287 ~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH------~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
....|+++++|+++++-.....|++||. +|..+..+... ......+++..+... .+++..+.++.|.+++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERSPTHQIQIYNQY 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECGGGCEEEEECTT
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccc-cceeccCCcccccccccc
Confidence 4689999999998888777889999995 47777666321 123455666655442 133344556677777653
Q ss_pred CCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCcee
Q 048801 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHE 440 (1715)
Q Consensus 361 tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~ 440 (1715)
+.....+.. ........+++.++|.++++....+.+.+++.... .
T Consensus 102 -g~~~~~~~~------------------------~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~----------~ 146 (279)
T d1q7fa_ 102 -GQFVRKFGA------------------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN----------V 146 (279)
T ss_dssp -SCEEEEECT------------------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC----------E
T ss_pred -ccceeecCC------------------------CcccccceeccccCCcEEEEeeccceeeEeccCCc----------e
Confidence 332222211 11234678999999998888888888888886532 1
Q ss_pred eee--ecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccc
Q 048801 441 LDV--LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRA 518 (1715)
Q Consensus 441 l~~--l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~ 518 (1715)
+.. ...+......+++.+++ ..+++....+.|.+|+... +....++
T Consensus 147 ~~~~g~~~~~~~~~~i~~d~~g--------------------------~i~v~d~~~~~V~~~d~~G-~~~~~~g----- 194 (279)
T d1q7fa_ 147 LHKFGCSKHLEFPNGVVVNDKQ--------------------------EIFISDNRAHCVKVFNYEG-QYLRQIG----- 194 (279)
T ss_dssp EEEEECTTTCSSEEEEEECSSS--------------------------EEEEEEGGGTEEEEEETTC-CEEEEES-----
T ss_pred eecccccccccccceeeeccce--------------------------eEEeeeccccceeeeecCC-ceeeeec-----
Confidence 222 23445567778887765 6778888889999998753 1111100
Q ss_pred ccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec-CCeEEEEECCCCceEEEEecC--CCCeEEEEE
Q 048801 519 YHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM-DCRICVWNAVDGSLVHSLTGH--SASSYVLDV 595 (1715)
Q Consensus 519 ~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~-DGtI~IWDl~sg~~l~tL~gH--~~~V~sLaf 595 (1715)
..+.......|+++++|+++++-.. ++.|.+|+ .+|+.+.++... ......|++
T Consensus 195 ----------------------~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav 251 (279)
T d1q7fa_ 195 ----------------------GEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVAL 251 (279)
T ss_dssp ----------------------CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEE
T ss_pred ----------------------ccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEE
Confidence 0112234678999999998776544 45799998 578888877533 345789999
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 596 HPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 596 SP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
.| ++.++++ ..+++|++|......
T Consensus 252 ~~-dG~l~V~-~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 252 MD-DGSVVLA-SKDYRLYIYRYVQLA 275 (279)
T ss_dssp ET-TTEEEEE-ETTTEEEEEECSCCC
T ss_pred eC-CCcEEEE-eCCCeEEEEEeeeec
Confidence 99 6666654 578999999986654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.42 E-value=9.2e-05 Score=82.99 Aligned_cols=243 Identities=14% Similarity=0.113 Sum_probs=152.5
Q ss_pred CeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC
Q 048801 329 AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN 408 (1715)
Q Consensus 329 ~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd 408 (1715)
....|++.+++. .+++-..+..|++||.. +..+..+...... .........+++..+
T Consensus 24 ~P~gvavd~dg~---i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~-------------------~~~~~~p~~~~~~~~ 80 (279)
T d1q7fa_ 24 EPSGVAVNAQND---IIVADTNNHRIQIFDKE-GRFKFQFGECGKR-------------------DSQLLYPNRVAVVRN 80 (279)
T ss_dssp CEEEEEECTTCC---EEEEEGGGTEEEEECTT-SCEEEEECCBSSS-------------------TTCBSSEEEEEEETT
T ss_pred CccEEEEcCCCC---EEEEECCCCEEEEEeCC-CCEEEEecccCCC-------------------ccccccccccccccc
Confidence 468999999886 66666778889999864 5444333111000 001112344555544
Q ss_pred -CCeEEE-ecCCCeEEEEeCCCCCccCCCCCceeeeee-cCCCCCeeEEEEccCcccccccccccccccccccccCCccc
Q 048801 409 -GTVFVT-GSSDTFARVWSACKSSVEDSEQPIHELDVL-SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFC 485 (1715)
Q Consensus 409 -G~~Lat-Gs~DG~IrVWDl~t~~~~~~~~~~~~l~~l-~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~ 485 (1715)
+..+++ .+.++.|.+++.... ....+ .........+++.+++
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~g~----------~~~~~~~~~~~~p~~~avd~~G------------------------- 125 (279)
T d1q7fa_ 81 SGDIIVTERSPTHQIQIYNQYGQ----------FVRKFGATILQHPRGVTVDNKG------------------------- 125 (279)
T ss_dssp TTEEEEEECGGGCEEEEECTTSC----------EEEEECTTTCSCEEEEEECTTS-------------------------
T ss_pred ccccceeccCCcccccccccccc----------ceeecCCCcccccceeccccCC-------------------------
Confidence 333433 344567777765421 12222 2233455667776654
Q ss_pred CceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec
Q 048801 486 HDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM 565 (1715)
Q Consensus 486 ~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~ 565 (1715)
..+++....+.+.+++... +....+ ....+......+++.++|..+++...
T Consensus 126 -~i~v~~~~~~~~~~~~~~g-~~~~~~---------------------------g~~~~~~~~~~i~~d~~g~i~v~d~~ 176 (279)
T d1q7fa_ 126 -RIIVVECKVMRVIIFDQNG-NVLHKF---------------------------GCSKHLEFPNGVVVNDKQEIFISDNR 176 (279)
T ss_dssp -CEEEEETTTTEEEEECTTS-CEEEEE---------------------------ECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred -cEEEEeeccceeeEeccCC-ceeecc---------------------------cccccccccceeeeccceeEEeeecc
Confidence 4566666666677766542 100000 01123445778999999999998888
Q ss_pred CCeEEEEECCCCceEEEEe--cCCCCeEEEEEccCCCcEEEEEeC-CCcEEEEECCCCceEEEEEccc--ceEEEEEEcC
Q 048801 566 DCRICVWNAVDGSLVHSLT--GHSASSYVLDVHPFNPRIAMSAGY-DGRTIVWDIWEGTPIRIYEIGR--FKLVDGKFSP 640 (1715)
Q Consensus 566 DGtI~IWDl~sg~~l~tL~--gH~~~V~sLafSP~dg~lLaSgs~-DGtI~VWDl~tgk~l~tl~~h~--~~V~svafSP 640 (1715)
.+.|++|+. +|+.+.++. ++......|++.+ +++++++-.. ++.|.+|+ .+|+.+.++.... .....+++.|
T Consensus 177 ~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~ 253 (279)
T d1q7fa_ 177 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMD 253 (279)
T ss_dssp GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEET
T ss_pred ccceeeeec-CCceeeeecccccccCCccccccc-CCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeC
Confidence 999999996 677777773 3455678999999 5567766544 45799998 4798888876432 3478899999
Q ss_pred CCCEEEEEeCCCeEEEEECCCC
Q 048801 641 DGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 641 DG~~LAsgs~DG~I~IWdl~tG 662 (1715)
||.+ ++++.+..|++|...+.
T Consensus 254 dG~l-~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 254 DGSV-VLASKDYRLYIYRYVQL 274 (279)
T ss_dssp TTEE-EEEETTTEEEEEECSCC
T ss_pred CCcE-EEEeCCCeEEEEEeeee
Confidence 9975 55567899999997654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.42 E-value=2.4e-05 Score=91.71 Aligned_cols=116 Identities=8% Similarity=0.030 Sum_probs=73.8
Q ss_pred CCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCceEE--EEe-----------------cCCCCeEEEEEccCCCcEEE
Q 048801 545 PRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSLVH--SLT-----------------GHSASSYVLDVHPFNPRIAM 604 (1715)
Q Consensus 545 ~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~~l~--tL~-----------------gH~~~V~sLafSP~dg~lLa 604 (1715)
....+.++|+|+|+++++.. .+++|.+|++..+.... ... .+......+.++| ++++|+
T Consensus 192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~ly 270 (365)
T d1jofa_ 192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMF 270 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEE
T ss_pred CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECC-CCCEEE
Confidence 35678899999999886555 57899999987654322 111 1112356789999 555544
Q ss_pred EE-eCCC-----cEEEEECCCCceEEEEE------cccceEEEEEEcC-CCCEEEEE-eCCCeEEEEECCC
Q 048801 605 SA-GYDG-----RTIVWDIWEGTPIRIYE------IGRFKLVDGKFSP-DGTSIVLS-DDVGQIYLLNTGQ 661 (1715)
Q Consensus 605 Sg-s~DG-----tI~VWDl~tgk~l~tl~------~h~~~V~svafSP-DG~~LAsg-s~DG~I~IWdl~t 661 (1715)
++ ..+. .|.+|++.....+.... ........++|+| +|++|+++ ..++.|.||++..
T Consensus 271 vsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred EEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence 44 3232 37777775432222111 1122346789998 89988877 5678999998754
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.36 E-value=7e-05 Score=85.85 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=81.1
Q ss_pred eeEEEeCCCCC-----EEEEEecCCeEEEEECCCCceEE------EEec-CCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 048801 548 VNMIVWSLDNR-----FVLAAIMDCRICVWNAVDGSLVH------SLTG-HSASSYVLDVHPFNPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 548 VtslafSPDG~-----~LaTgs~DGtI~IWDl~sg~~l~------tL~g-H~~~V~sLafSP~dg~lLaSgs~DGtI~VW 615 (1715)
.+.++|++++. ++++-+..+.|+.|++.....+. .+.+ +....-.|++.. ++++.++....+.|.+|
T Consensus 174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~~~~g~I~~~ 252 (314)
T d1pjxa_ 174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVF 252 (314)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEE
T ss_pred eeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec-CCcEEEEEcCCCEEEEE
Confidence 46789998764 44555677889998875432222 2222 222346789988 66777777778999999
Q ss_pred ECCCCceEEEEEcccceEEEEEEcCCCCEEE-EEeCCCeEEEEECC
Q 048801 616 DIWEGTPIRIYEIGRFKLVDGKFSPDGTSIV-LSDDVGQIYLLNTG 660 (1715)
Q Consensus 616 Dl~tgk~l~tl~~h~~~V~svafSPDG~~LA-sgs~DG~I~IWdl~ 660 (1715)
|...++.+..+.......++++|.||++.|. +....|.|+.+++.
T Consensus 253 dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 253 GPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp CTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred eCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 9988888887776666788999999998655 55667899998875
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.35 E-value=0.00012 Score=84.01 Aligned_cols=237 Identities=11% Similarity=-0.025 Sum_probs=146.8
Q ss_pred CeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecC----CCcEEEEecCCC
Q 048801 287 DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD----DGTCRIWDARYS 362 (1715)
Q Consensus 287 ~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~----DGtVrIWDl~tg 362 (1715)
.+..++|.++|++.++-...+.|..|+..++.....+.........|+|.+++. ++++... .+.|...+...+
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~---l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR---LFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC---EEEEECTTSSSCCEEEEECTTSC
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCC---EEEEecCCCccceeEEEEcCCCc
Confidence 456799999999888777889999999877766666666667789999999986 4444322 233444444443
Q ss_pred CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC------CCeEEEEeCCCCCccCCCC
Q 048801 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS------DTFARVWSACKSSVEDSEQ 436 (1715)
Q Consensus 363 ~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~------DG~IrVWDl~t~~~~~~~~ 436 (1715)
........ ......+..+++.++|++.++... .+.+..++.....
T Consensus 118 ~~~~~~~~-----------------------~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~------ 168 (319)
T d2dg1a1 118 NLQDIIED-----------------------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT------ 168 (319)
T ss_dssp SCEEEECS-----------------------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC------
T ss_pred eeeeeccC-----------------------CCcccCCcceeEEeccceeecccccccccCcceeEEEecccce------
Confidence 32211100 011233678999999997776432 2334444443211
Q ss_pred CceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccc
Q 048801 437 PIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWT 516 (1715)
Q Consensus 437 ~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~ 516 (1715)
+..+...-...+.|+|++++ ..++++-+..+.|..|++...........
T Consensus 169 ----~~~~~~~~~~pnGia~s~dg-------------------------~~lyvad~~~~~I~~~d~~~~g~~~~~~~-- 217 (319)
T d2dg1a1 169 ----VTPIIQNISVANGIALSTDE-------------------------KVLWVTETTANRLHRIALEDDGVTIQPFG-- 217 (319)
T ss_dssp ----EEEEEEEESSEEEEEECTTS-------------------------SEEEEEEGGGTEEEEEEECTTSSSEEEEE--
T ss_pred ----eEEEeeccceeeeeeecccc-------------------------ceEEEecccCCceEEEEEcCCCceecccc--
Confidence 12222222345678999876 23567777889999998764211100000
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe------cCCCCe
Q 048801 517 RAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT------GHSASS 590 (1715)
Q Consensus 517 ~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~------gH~~~V 590 (1715)
. ..............+++..+|++.++....+.|.+|+. +|+.+..+. ++...+
T Consensus 218 ~-------------------~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~ 277 (319)
T d2dg1a1 218 A-------------------TIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRS 277 (319)
T ss_dssp E-------------------EEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBC
T ss_pred c-------------------eeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCcee
Confidence 0 00001111223567999999998888888999999995 799888875 344567
Q ss_pred EEEEEccCCCcEEEEE
Q 048801 591 YVLDVHPFNPRIAMSA 606 (1715)
Q Consensus 591 ~sLafSP~dg~lLaSg 606 (1715)
++++|.+....++++.
T Consensus 278 ~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 278 THPQFIPGTNQLIICS 293 (319)
T ss_dssp CEEEECTTSCEEEEEE
T ss_pred eeEEEeCCCCEEEEEc
Confidence 8999988544555554
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=6.6e-05 Score=90.91 Aligned_cols=323 Identities=10% Similarity=0.008 Sum_probs=167.0
Q ss_pred CeEEEEEcCCCCEEEEEe---------CCCcEEEEeCCCCcEEEEe--cCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 245 AVYCAIFDRSGRFVITGS---------DDRLVKIWSMETAFCLASC--RGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS---------~DGtIrIWDl~tgk~l~tL--~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
.+....|||||++|+.+. ..+.+.|+|+.++...... ......+....|||||+.||-.. ++.|.+.+
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~ 140 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA 140 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence 566778999999988764 3578899999988754432 23344566789999999998875 56889998
Q ss_pred CCCCCceEEEeC-CCCC-----------------eEEEEecCCCCcceEEEEec-CCCcEEEEecCC--CC---Ccceec
Q 048801 314 LPDGLPISVLRG-HTGA-----------------VTAIAFSPRPSAIYQLLSSS-DDGTCRIWDARY--SQ---YSPRIY 369 (1715)
Q Consensus 314 l~tg~~l~~L~g-H~~~-----------------VtsLafSPdg~~~~~LaSgS-~DGtVrIWDl~t--g~---~l~~i~ 369 (1715)
..++..++.... ..+. -.++.|||+++ +|+... .+..|..+.+.. +. ....+.
T Consensus 141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk---~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~ 217 (465)
T d1xfda1 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT---RLAYAAINDSRVPIMELPTYTGSIYPTVKPYH 217 (465)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS---EEEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCC---eEEEEEecccccceeecccccccccceeeeee
Confidence 887776655432 1121 25788999998 555543 344455554321 11 111111
Q ss_pred CCCCCCCcc----CccCCCCCCC-----CCCCCCCCCcceeEEEEccCCCeEEEecC----CCeEEEEeCCCCCccCCCC
Q 048801 370 LPKPPDAIT----GKSNVPSNNG-----PSSSNGLQSHQILCCAYNANGTVFVTGSS----DTFARVWSACKSSVEDSEQ 436 (1715)
Q Consensus 370 ~~~~~~~i~----g~~~~~~~~~-----~~~~~~~h~~~VtslafSpdG~~LatGs~----DG~IrVWDl~t~~~~~~~~ 436 (1715)
.+.+..... ....+..... +..........+..+.|++++++++.... ...|.++|..++++
T Consensus 218 Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~----- 292 (465)
T d1xfda1 218 YPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC----- 292 (465)
T ss_dssp CCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE-----
T ss_pred ccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcE-----
Confidence 111111100 0000000000 01111122335788999999987666432 23577888877643
Q ss_pred CceeeeeecCCCCCe----eEEEEccCcccccccccccccccccccccCCcccCce-EEE-EcCCC--eEEEEecCCCcc
Q 048801 437 PIHELDVLSGHENDV----NYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN-IVT-CSRDG--SAIIWIPRSRRS 508 (1715)
Q Consensus 437 ~~~~l~~l~gH~~~V----~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~-LaS-gS~DG--sIrIWDl~t~~~ 508 (1715)
..+.. ......| ....|++++ ... ++. ...+| .+....+....
T Consensus 293 --~~~~~-e~~~~wv~~~~~~p~~~~dg-------------------------~~~~fi~~se~~g~~~ly~~~~~~~~- 343 (465)
T d1xfda1 293 --TKKHE-DESEAWLHRQNEEPVFSKDG-------------------------RKFFFIRAIPQGGRGKFYHITVSSSQ- 343 (465)
T ss_dssp --EEEEE-EECSSCCCCCCCCCEECTTS-------------------------CSEEEEEEECCSSSSCEEEEEEECSS-
T ss_pred --EEEEE-EcCCceEeccCCceeEccCC-------------------------CeeEEEEeeeecccCceEEEEecccc-
Confidence 11111 0111111 223455554 111 121 11222 22222211100
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEE-EeCCCCCEEEE-EecCC----eEEEEECCCCceEEE
Q 048801 509 HGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMI-VWSLDNRFVLA-AIMDC----RICVWNAVDGSLVHS 582 (1715)
Q Consensus 509 ~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsl-afSPDG~~LaT-gs~DG----tI~IWDl~sg~~l~t 582 (1715)
....+.....+....-.|..+ +|+.+++.|+. +..++ .|+-.++..+.....
T Consensus 344 ----------------------~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~ 401 (465)
T d1xfda1 344 ----------------------PNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQC 401 (465)
T ss_dssp ----------------------CCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBC
T ss_pred ----------------------ccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCccee
Confidence 000112222233334445554 68888877654 43332 244444443333222
Q ss_pred Ee---cCCCCeEEEEEccCCCcEEEEEeCC--CcEEEEECCCCceEEEEE
Q 048801 583 LT---GHSASSYVLDVHPFNPRIAMSAGYD--GRTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 583 L~---gH~~~V~sLafSP~dg~lLaSgs~D--GtI~VWDl~tgk~l~tl~ 627 (1715)
+. ........+.|||++..++.+++.- -.+.|++..+++.+..+.
T Consensus 402 lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le 451 (465)
T d1xfda1 402 LSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE 451 (465)
T ss_dssp SSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred eccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEc
Confidence 22 2344567899999555555554432 357888888898888876
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.23 E-value=0.00046 Score=78.85 Aligned_cols=247 Identities=10% Similarity=0.023 Sum_probs=144.2
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC----CeeEEEEC
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND----FVIRVWRL 314 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D----GtIrVWDl 314 (1715)
+......+..++|+++|++.++-...+.|..|+..++.....+.........|+|++||+++++...+ +.|...+.
T Consensus 35 ~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~ 114 (319)
T d2dg1a1 35 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE 114 (319)
T ss_dssp EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred eccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcC
Confidence 33344456789999999987777788999999998887777666667788999999999988876432 33444454
Q ss_pred CCCCceEEEeC--CCCCeEEEEecCCCCcceEEEEecC------CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 315 PDGLPISVLRG--HTGAVTAIAFSPRPSAIYQLLSSSD------DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 315 ~tg~~l~~L~g--H~~~VtsLafSPdg~~~~~LaSgS~------DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
..+........ -......+++.+++. +.++... .+.+..++..... +..+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~nd~~~d~~G~---l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~----------------- 173 (319)
T d2dg1a1 115 NGDNLQDIIEDLSTAYCIDDMVFDSKGG---FYFTDFRGYSTNPLGGVYYVSPDFRT-VTPII----------------- 173 (319)
T ss_dssp TSCSCEEEECSSSSCCCEEEEEECTTSC---EEEEECCCBTTBCCEEEEEECTTSCC-EEEEE-----------------
T ss_pred CCceeeeeccCCCcccCCcceeEEeccc---eeecccccccccCcceeEEEecccce-eEEEe-----------------
Confidence 44444433322 123467889999886 3443221 1223333332211 11110
Q ss_pred CCCCCCCCCCCcceeEEEEccCCCeE-EEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANGTVF-VTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG~~L-atGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~ 465 (1715)
..-.....++|+++++.| ++-+..+.|..|++.......... ................+++..+|
T Consensus 174 --------~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~-~~~~~~~~~~~~~PdGl~vD~~G----- 239 (319)
T d2dg1a1 174 --------QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF-GATIPYYFTGHEGPDSCCIDSDD----- 239 (319)
T ss_dssp --------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE-EEEEEEECCSSSEEEEEEEBTTC-----
T ss_pred --------eccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccc-cceeeeccCCccceeeeeEcCCC-----
Confidence 001124679999999855 555667899999886421100000 00001111111224457776665
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
++.++....+.|.+|+.. ++.+..+ .++. .-..+.
T Consensus 240 ---------------------~l~Va~~~~g~V~~~~p~-G~~l~~i---------~~P~--------------~~~~~~ 274 (319)
T d2dg1a1 240 ---------------------NLYVAMYGQGRVLVFNKR-GYPIGQI---------LIPG--------------RDEGHM 274 (319)
T ss_dssp ---------------------CEEEEEETTTEEEEECTT-SCEEEEE---------ECTT--------------GGGTCS
T ss_pred ---------------------CEEEEEcCCCEEEEECCC-CcEEEEE---------eCCC--------------cCCCcC
Confidence 677777888999999864 3322211 0000 011233
Q ss_pred CCeeEEEeCCCCCEEEEEec
Q 048801 546 RGVNMIVWSLDNRFVLAAIM 565 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~ 565 (1715)
..+++++|.+++..+++...
T Consensus 275 ~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 275 LRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp CBCCEEEECTTSCEEEEEEE
T ss_pred ceeeeEEEeCCCCEEEEEcC
Confidence 45789999998877766554
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.84 E-value=0.002 Score=72.56 Aligned_cols=234 Identities=13% Similarity=0.057 Sum_probs=144.4
Q ss_pred EEEECCC-CCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCccee
Q 048801 290 DLAVSSN-NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRI 368 (1715)
Q Consensus 290 sLafSpD-g~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i 368 (1715)
+..|++. +.++.+--..+.|..||..++... .+. ....+.++++.+++. |+.++.+| |.++|..+++.....
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~----l~va~~~g-l~~~d~~tg~~~~l~ 94 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSK----QLIASDDG-LFLRDTATGVLTLHA 94 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTE----EEEEETTE-EEEEETTTCCEEEEE
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCC----EEEEEeCc-cEEeecccceeeEEe
Confidence 4567764 444444446788999998887543 332 355788999998874 44455554 888999887643222
Q ss_pred cCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC----CCeEEEEeCCCCCccCCCCCceeeeee
Q 048801 369 YLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS----DTFARVWSACKSSVEDSEQPIHELDVL 444 (1715)
Q Consensus 369 ~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~----DG~IrVWDl~t~~~~~~~~~~~~l~~l 444 (1715)
.... ......+..+.+.++|++.++... .+.-.+|.+..++. ..+
T Consensus 95 ~~~~---------------------~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~----------~~~ 143 (295)
T d2ghsa1 95 ELES---------------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV----------TKL 143 (295)
T ss_dssp CSST---------------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE----------EEE
T ss_pred eeec---------------------CCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcE----------EEE
Confidence 1100 111345788999999987765432 22344555544321 111
Q ss_pred cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCC
Q 048801 445 SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVP 524 (1715)
Q Consensus 445 ~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~ 524 (1715)
...-..-+.++|++++ ...+++-+..+.|..+++........ +.
T Consensus 144 ~~~~~~~Ng~~~s~d~-------------------------~~l~~~dt~~~~I~~~~~d~~~~~~~-~~---------- 187 (295)
T d2ghsa1 144 FADISIPNSICFSPDG-------------------------TTGYFVDTKVNRLMRVPLDARTGLPT-GK---------- 187 (295)
T ss_dssp EEEESSEEEEEECTTS-------------------------CEEEEEETTTCEEEEEEBCTTTCCBS-SC----------
T ss_pred eeccCCcceeeecCCC-------------------------ceEEEeecccceeeEeeecccccccc-cc----------
Confidence 1222245678888875 24667777888898888753210000 00
Q ss_pred CCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEc-cCCCcEE
Q 048801 525 PPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVH-PFNPRIA 603 (1715)
Q Consensus 525 ~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafS-P~dg~lL 603 (1715)
...........+....+++..+|++.++.-..+.|.+||. +|+.+..+.-....+++++|- ++...++
T Consensus 188 ----------~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~Ly 256 (295)
T d2ghsa1 188 ----------AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLL 256 (295)
T ss_dssp ----------CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred ----------eEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEE
Confidence 0000111223445788999999998887778889999994 799999888766779999995 4345566
Q ss_pred EEEeC
Q 048801 604 MSAGY 608 (1715)
Q Consensus 604 aSgs~ 608 (1715)
+|...
T Consensus 257 vTta~ 261 (295)
T d2ghsa1 257 VTSAR 261 (295)
T ss_dssp EEEBC
T ss_pred EEECC
Confidence 66543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.77 E-value=0.00093 Score=72.87 Aligned_cols=89 Identities=10% Similarity=0.054 Sum_probs=63.8
Q ss_pred EEcCC--CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC-C-----CeeEEEECCCCCceE
Q 048801 250 IFDRS--GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN-D-----FVIRVWRLPDGLPIS 321 (1715)
Q Consensus 250 afSpD--G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~-D-----GtIrVWDl~tg~~l~ 321 (1715)
..+|| |+.||..+ +|.|.+.|+.+++.. .|..+.+.+...+|||||+.||.... + ..|.++++.++....
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 36788 99888765 467888899988764 56667788999999999999986543 2 247777877776543
Q ss_pred EEe------CCCCCeEEEEecCCCC
Q 048801 322 VLR------GHTGAVTAIAFSPRPS 340 (1715)
Q Consensus 322 ~L~------gH~~~VtsLafSPdg~ 340 (1715)
... ........++|+|+++
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~ 107 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGN 107 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCC
T ss_pred eeecCCCccCccccccccccCCCCC
Confidence 221 1223456788999997
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.64 E-value=0.00054 Score=74.86 Aligned_cols=101 Identities=8% Similarity=0.136 Sum_probs=64.1
Q ss_pred EECCC--CCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEe----cCC--CcEEEEecCCCC
Q 048801 292 AVSSN--NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS----SDD--GTCRIWDARYSQ 363 (1715)
Q Consensus 292 afSpD--g~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSg----S~D--GtVrIWDl~tg~ 363 (1715)
..||| |+.||..+. |.|.+.|+.+++. ..|..+.+.+...+|||||+ .|+.. +.+ ..|.++++.+++
T Consensus 5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~---~iaf~~~~~~~~~~~~i~~~~~~~g~ 79 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGST-RKIVSNLGVINNARFFPDGR---KIAIRVMRGSSLNTADLYFYNGENGE 79 (281)
T ss_dssp CEEEEEETTEEEEEET-TEEEEEETTTCCE-EEEECSSSEEEEEEECTTSS---EEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred ccCCCCCCCEEEEEeC-CcEEEEECCCCCE-EEEecCCCcccCEEECCCCC---EEEEEEeeCCCCCceEEEEEEecCCc
Confidence 46788 998887654 5788889987775 45676788899999999998 44432 222 236667776665
Q ss_pred CcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec
Q 048801 364 YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS 416 (1715)
Q Consensus 364 ~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs 416 (1715)
......... ............+|+|+|+.|+...
T Consensus 80 ~~~lt~~~~-------------------~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 80 IKRITYFSG-------------------KSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp EEECCCCCE-------------------EEETTEECSEEEEECTTCCEEEEEC
T ss_pred eEEeeecCC-------------------CccCccccccccccCCCCCEEEEEE
Confidence 322111000 0001123356789999999887643
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.54 E-value=0.0088 Score=67.11 Aligned_cols=101 Identities=18% Similarity=0.105 Sum_probs=72.8
Q ss_pred CeeEEEeCCCCCEEEE-EecCCeEEEEECCC------Cce--EEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 547 GVNMIVWSLDNRFVLA-AIMDCRICVWNAVD------GSL--VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 547 ~VtslafSPDG~~LaT-gs~DGtI~IWDl~s------g~~--l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
..+.++|+++++.|+. -+..+.|+.+++.. ++. ...+.+..+....+++.. ++++.++.-..|.|..||-
T Consensus 149 ~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~V~~~dp 227 (295)
T d2ghsa1 149 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDT 227 (295)
T ss_dssp SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECT
T ss_pred CcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC-CCCEEeeeeCCCceEEecC
Confidence 3577899999986654 45577899888742 111 122234455678899988 6677766667788999994
Q ss_pred CCCceEEEEEcccceEEEEEEc-CCCCEEEEEe
Q 048801 618 WEGTPIRIYEIGRFKLVDGKFS-PDGTSIVLSD 649 (1715)
Q Consensus 618 ~tgk~l~tl~~h~~~V~svafS-PDG~~LAsgs 649 (1715)
+|+.+..+......+++++|- +|.+.|++++
T Consensus 228 -~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 228 -DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp -TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred -CCcEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence 799999998766679999995 7877777554
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.31 E-value=0.01 Score=72.88 Aligned_cols=110 Identities=14% Similarity=0.047 Sum_probs=69.6
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEecCCCC----------Ce-EEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe
Q 048801 256 RFVITGSDDRLVKIWSMETAFCLASCRGHEG----------DI-TDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 256 ~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~----------~V-tsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~ 324 (1715)
..|+.++.++.|.-.|..||+.+-.+..... .+ ..++. .+..|+.++.|+.|.-.|..+|+.+....
T Consensus 67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~ 144 (560)
T d1kv9a2 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (560)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccC
Confidence 3666777889999999999999987642111 00 11111 24568888899999999999999888775
Q ss_pred CCCC-CeEEEEecC---CCCcceEEEEec------CCCcEEEEecCCCCCcceecCC
Q 048801 325 GHTG-AVTAIAFSP---RPSAIYQLLSSS------DDGTCRIWDARYSQYSPRIYLP 371 (1715)
Q Consensus 325 gH~~-~VtsLafSP---dg~~~~~LaSgS------~DGtVrIWDl~tg~~l~~i~~~ 371 (1715)
.+.. ....+.-.| ++ .++.+. ..|.|.-+|..+|+.+..+...
T Consensus 145 ~~~~~~~~~~~~~p~v~~~----~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~ 197 (560)
T d1kv9a2 145 TTDPAKPYSITGAPRVVKG----KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTV 197 (560)
T ss_dssp CSCTTSSCBCCSCCEEETT----EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred ccCcccceeeeeeeeeecC----cccccccceeccccceEEEEECCCceEEeeeeec
Confidence 3221 111111111 22 233332 2377999999999988877653
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.25 E-value=0.016 Score=66.24 Aligned_cols=170 Identities=14% Similarity=0.093 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCEEEEEeCCC-----------cEEEEeCCCCcEE--EE-ecCCCCCeEEEEECCCCCEEEEEeCC-CeeE
Q 048801 246 VYCAIFDRSGRFVITGSDDR-----------LVKIWSMETAFCL--AS-CRGHEGDITDLAVSSNNTLVASASND-FVIR 310 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DG-----------tIrIWDl~tgk~l--~t-L~gHs~~VtsLafSpDg~lLASGS~D-GtIr 310 (1715)
+...+...+|++++.|+.+. .+.+||..+++-. .. ...|..-....++.++|++++.|+.+ ..+.
T Consensus 22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~ 101 (387)
T d1k3ia3 22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 101 (387)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence 34445567888888888531 3779999877432 22 22333334466788999999998765 5899
Q ss_pred EEECCCCCceEEEeC-CCCCeEEEEecCCCCcceEEEEecCC------CcEEEEecCCCCCcceecCCCCCCCccCccCC
Q 048801 311 VWRLPDGLPISVLRG-HTGAVTAIAFSPRPSAIYQLLSSSDD------GTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383 (1715)
Q Consensus 311 VWDl~tg~~l~~L~g-H~~~VtsLafSPdg~~~~~LaSgS~D------GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~ 383 (1715)
+||..+..-...-.. ....-.+++..+++. +++.++.+ ..+.+||..+......-...........
T Consensus 102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~---v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~---- 174 (387)
T d1k3ia3 102 LYDSSSDSWIPGPDMQVARGYQSSATMSDGR---VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD---- 174 (387)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSC---EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC----
T ss_pred EecCccCcccccccccccccccceeeecCCc---eeeeccccccccccceeeeecCCCCceeecCCCccccccccc----
Confidence 999877643221111 111224566777776 66666542 3688999887653221100000000000
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCC
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~ 429 (1715)
..... . ...-..+...++|..++.+...+.+.+++..+.
T Consensus 175 -----~~~~~-~-~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~ 213 (387)
T d1k3ia3 175 -----KQGLY-R-SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG 213 (387)
T ss_dssp -----TTGGG-T-TTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred -----cccee-e-ccceeEEEEeCCCCEEEecCcCCcEEecCcccC
Confidence 00000 0 011122334567888888887787877777653
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.23 E-value=0.016 Score=71.14 Aligned_cols=109 Identities=12% Similarity=0.060 Sum_probs=68.6
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEecCCC----------CCe-EEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe
Q 048801 256 RFVITGSDDRLVKIWSMETAFCLASCRGHE----------GDI-TDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 256 ~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs----------~~V-tsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~ 324 (1715)
..|+.++.++.|.-+|..||+.+-.+.... ..+ ..+++. +..++.++.|+.+.-.|..+|+.+....
T Consensus 78 g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~ 155 (573)
T d1kb0a2 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQN 155 (573)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceeccc
Confidence 366777888999999999999988764211 111 112222 3367778889999989999999887654
Q ss_pred CCCCCe--EEEEecC---CCCcceEEEEec------CCCcEEEEecCCCCCcceecC
Q 048801 325 GHTGAV--TAIAFSP---RPSAIYQLLSSS------DDGTCRIWDARYSQYSPRIYL 370 (1715)
Q Consensus 325 gH~~~V--tsLafSP---dg~~~~~LaSgS------~DGtVrIWDl~tg~~l~~i~~ 370 (1715)
...... ..+.-.| .+ .+++++ ..|.|+.+|..+|+.+..+..
T Consensus 156 ~~~~~~~~~~~~~~p~v~~~----~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 208 (573)
T d1kb0a2 156 TFEGQKGSLTITGAPRVFKG----KVIIGNGGAEYGVRGYITAYDAETGERKWRWFS 208 (573)
T ss_dssp TTTTCCSSCBCCSCCEEETT----EEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CccCCcceEEeecceEEEec----cEEEeeccccccccceEEEEecCCccceeeeee
Confidence 321110 0111111 22 344443 247899999999998877654
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.16 E-value=0.013 Score=71.94 Aligned_cols=111 Identities=9% Similarity=0.062 Sum_probs=66.8
Q ss_pred CCCEEEEEe-CCCcEEEEeC-CCCcEEEEecCCCC----------Ce-EEEEECCCCCEEEEEeCCCeeEEEECCCCCce
Q 048801 254 SGRFVITGS-DDRLVKIWSM-ETAFCLASCRGHEG----------DI-TDLAVSSNNTLVASASNDFVIRVWRLPDGLPI 320 (1715)
Q Consensus 254 DG~~LaTGS-~DGtIrIWDl-~tgk~l~tL~gHs~----------~V-tsLafSpDg~lLASGS~DGtIrVWDl~tg~~l 320 (1715)
+| .|+.++ .++.|...|. +||+.+-++..... .+ ..+++. +..|+.++.||.|.-.|..+|+.+
T Consensus 62 ~g-~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~ 138 (571)
T d2ad6a1 62 GD-MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKIN 138 (571)
T ss_dssp TT-EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEE
T ss_pred CC-EEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhh
Confidence 44 444444 4678888887 47998887642100 00 123332 346778889999999999999987
Q ss_pred EEEeCCC----CCeEEEEecCCCCcceEEEEec------CCCcEEEEecCCCCCcceecCC
Q 048801 321 SVLRGHT----GAVTAIAFSPRPSAIYQLLSSS------DDGTCRIWDARYSQYSPRIYLP 371 (1715)
Q Consensus 321 ~~L~gH~----~~VtsLafSPdg~~~~~LaSgS------~DGtVrIWDl~tg~~l~~i~~~ 371 (1715)
....... ..++..-...++ .++.+. ..|.|+-+|+.+|+.+.+....
T Consensus 139 w~~~~~~~~~~~~~t~~p~v~~~----~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~ 195 (571)
T d2ad6a1 139 WEVEVCDPKVGSTLTQAPFVAKD----TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT 195 (571)
T ss_dssp EEEECCCGGGTCBCCSCCEEETT----EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred ccccccccccccceeecCeEeCC----eEEEeeccccccccCcEEEEECCCCcEEEEEecc
Confidence 7654211 111111111122 334433 3788999999999988766543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.15 E-value=0.039 Score=67.93 Aligned_cols=112 Identities=13% Similarity=0.090 Sum_probs=69.0
Q ss_pred CCCEEEEEeCCCcEEEEeC-CCCcEEEEecCCC----------CC-eEEEEECCC----CCEEEEEeCCCeeEEEECCCC
Q 048801 254 SGRFVITGSDDRLVKIWSM-ETAFCLASCRGHE----------GD-ITDLAVSSN----NTLVASASNDFVIRVWRLPDG 317 (1715)
Q Consensus 254 DG~~LaTGS~DGtIrIWDl-~tgk~l~tL~gHs----------~~-VtsLafSpD----g~lLASGS~DGtIrVWDl~tg 317 (1715)
+|.+.++++.++.|...|. .+|+.+-.+.... .. -+.+++.++ ..+|+.++.|+.|.-.|..+|
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG 141 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence 4444444555677777776 5788887764111 01 123455432 347889999999999999999
Q ss_pred CceEEEeCCC----CCeEE-EEecCCCCcceEEEEec------CCCcEEEEecCCCCCcceecC
Q 048801 318 LPISVLRGHT----GAVTA-IAFSPRPSAIYQLLSSS------DDGTCRIWDARYSQYSPRIYL 370 (1715)
Q Consensus 318 ~~l~~L~gH~----~~Vts-LafSPdg~~~~~LaSgS------~DGtVrIWDl~tg~~l~~i~~ 370 (1715)
+.+..+.... ..++. ..+. .+ .++.+. ..|.|+-+|+.+|+.+-++..
T Consensus 142 ~~~w~~~~~d~~~~~~~t~~P~v~-~~----~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t 200 (596)
T d1w6sa_ 142 ETVWKVENSDIKVGSTLTIAPYVV-KD----KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (596)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT----EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred ceeccccccccccccccccCCcEE-CC----eEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence 9988775211 11111 1111 22 345543 358999999999998877654
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.97 E-value=0.04 Score=62.76 Aligned_cols=116 Identities=15% Similarity=0.218 Sum_probs=72.6
Q ss_pred CeEEEEECCCCCEEEEEeCCC-----------eeEEEECCCCCce--EEE-eCCCCCeEEEEecCCCCcceEEEEecCC-
Q 048801 287 DITDLAVSSNNTLVASASNDF-----------VIRVWRLPDGLPI--SVL-RGHTGAVTAIAFSPRPSAIYQLLSSSDD- 351 (1715)
Q Consensus 287 ~VtsLafSpDg~lLASGS~DG-----------tIrVWDl~tg~~l--~~L-~gH~~~VtsLafSPdg~~~~~LaSgS~D- 351 (1715)
.+...+...+|++++.|+.+. .+.+||+.++.-. ... ..|.....+.++.+++. +++.|+.+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~---i~v~Gg~~~ 97 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ---IVVTGGNDA 97 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC---EEEECSSST
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCc---EEEeecCCC
Confidence 444455566888888877531 3679999887532 222 23444455677888886 66777554
Q ss_pred CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC------CeEEEEe
Q 048801 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD------TFARVWS 425 (1715)
Q Consensus 352 GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D------G~IrVWD 425 (1715)
..+.+||..+......-..+ ....-.+++..+||++++.|+.+ ..+.+||
T Consensus 98 ~~~~~yd~~~~~w~~~~~~~------------------------~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd 153 (387)
T d1k3ia3 98 KKTSLYDSSSDSWIPGPDMQ------------------------VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS 153 (387)
T ss_dssp TCEEEEEGGGTEEEECCCCS------------------------SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred cceeEecCccCccccccccc------------------------ccccccceeeecCCceeeeccccccccccceeeeec
Confidence 68999998876542211000 01112456778899999998753 3588898
Q ss_pred CCCC
Q 048801 426 ACKS 429 (1715)
Q Consensus 426 l~t~ 429 (1715)
..+.
T Consensus 154 ~~~~ 157 (387)
T d1k3ia3 154 PSSK 157 (387)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 8764
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.90 E-value=0.38 Score=58.51 Aligned_cols=80 Identities=14% Similarity=0.182 Sum_probs=55.0
Q ss_pred CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceE-EEEEEcCCCC-E
Q 048801 567 CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKL-VDGKFSPDGT-S 644 (1715)
Q Consensus 567 GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V-~svafSPDG~-~ 644 (1715)
|.|.-+|+.+|+.+.....+.. +.+-.++. .+.++++|+.||.++.+|..+|+.+..+....... .-+.|..||+ |
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p-~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY 543 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CeEEEEcCCCCcEEeecCCCCC-CccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 5788889999999888764422 11111223 44566779999999999999999999998543321 1256778886 4
Q ss_pred EEEE
Q 048801 645 IVLS 648 (1715)
Q Consensus 645 LAsg 648 (1715)
||+.
T Consensus 544 v~i~ 547 (582)
T d1flga_ 544 LGVT 547 (582)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.84 E-value=0.53 Score=51.90 Aligned_cols=268 Identities=12% Similarity=0.090 Sum_probs=158.3
Q ss_pred CCcEEEEeCCCCcE-EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcc
Q 048801 264 DRLVKIWSMETAFC-LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAI 342 (1715)
Q Consensus 264 DGtIrIWDl~tgk~-l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~ 342 (1715)
...|.|-|+..... .+.--.-. +.-.+|..+.||.-+ ..++.|+|+++...++.+.- ...|.--.|-.+.
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi~Ad----sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~--- 114 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN--- 114 (327)
T ss_dssp EEEEEEEETTSTTSCEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSS---
T ss_pred CceEEEEECCCCCcceecccchh----hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCC---
Confidence 45788889876543 33222222 334678888888766 45899999999998888873 4466667777665
Q ss_pred eEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec------
Q 048801 343 YQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS------ 416 (1715)
Q Consensus 343 ~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs------ 416 (1715)
.|+..+ +..|+-|++.... .+...+... ....+.+|..-..++++++++..+
T Consensus 115 -~L~lVT-~taVYHW~~~g~s-~P~k~fdR~-------------------~~L~~~QIInY~~d~~~kW~~l~GI~~~~~ 172 (327)
T d1utca2 115 -TVALVT-DNAVYHWSMEGES-QPVKMFDRH-------------------SSLAGCQIINYRTDAKQKWLLLTGISAQQN 172 (327)
T ss_dssp -EEEEEC-SSEEEEEESSSSC-CCEEEEECC-------------------GGGTTCEEEEEEECTTSCEEEEEEEEEETT
T ss_pred -EEEEEc-CCceEEEcccCCC-Cchhhhhhc-------------------ccccCceEEEEEECCCCCEEEEEeEecCCC
Confidence 344333 3459999985432 222111111 011256788888899999877543
Q ss_pred -CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEE---E
Q 048801 417 -SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVT---C 492 (1715)
Q Consensus 417 -~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaS---g 492 (1715)
-.|.+.+|..... .-+.+.||......+.+..+.. ....|+. +
T Consensus 173 ~i~G~mQLYS~er~----------~sQ~ieGhaa~F~~~~~~g~~~-----------------------~~~lf~fa~r~ 219 (327)
T d1utca2 173 RVVGAMQLYSVDRK----------VSQPIEGHAASFAQFKMEGNAE-----------------------ESTLFCFAVRG 219 (327)
T ss_dssp EEEEEEEEEETTTT----------EEEEECCSEEEEEEECCTTCSS-----------------------CEEEEEEEEEE
T ss_pred ceeEEEEEEEeccC----------cCccccceeeeeEEEEcCCCCC-----------------------CceEEEEEECC
Confidence 2477889988753 3466788865554444433210 0112222 2
Q ss_pred cCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEE
Q 048801 493 SRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 572 (1715)
Q Consensus 493 S~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IW 572 (1715)
...+.+.|.++.+...- ...-..+...+..++ .....-..++..|+.-..+..-+.-|.|++|
T Consensus 220 ~~~~kLhIiEig~~~~g-~~~f~kk~vdi~fpp----------------ea~~DFPvamqvs~kygiiyviTK~G~i~ly 282 (327)
T d1utca2 220 QAGGKLHIIEVGTPPTG-NQPFPKKAVDVFFPP----------------EAQNDFPVAMQISEKHDVVFLITKYGYIHLY 282 (327)
T ss_dssp TTEEEEEEEECSCCCTT-CCCCCCEEEECCCCT----------------TCTTCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred CCCcEEEEEEcCCCccC-CCCCcceeEEEECCc----------------cccCCcEEEEEeeccCCEEEEEecCcEEEEE
Confidence 23367888877642110 000000111111111 0112234567888888899999999999999
Q ss_pred ECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 048801 573 NAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTI 613 (1715)
Q Consensus 573 Dl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~ 613 (1715)
|+.++.++..-+-....|..-+-+...+.++ +...+|.|.
T Consensus 283 DleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~-~VNr~GqVl 322 (327)
T d1utca2 283 DLETGTCIYMNRISGETIFVTAPHEATAGII-GVNRKGQVL 322 (327)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEEETTTTEEE-EEETTSEEE
T ss_pred EcccccEEEEeecCCCceEEeccCCCCceEE-EECCCCeEE
Confidence 9999999988776777776555544233333 344666554
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.83 E-value=0.042 Score=63.80 Aligned_cols=295 Identities=10% Similarity=0.058 Sum_probs=162.3
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEecCC---------------------------------------CCCeE--EEEECC-
Q 048801 258 VITGSDDRLVKIWSMETAFCLASCRGH---------------------------------------EGDIT--DLAVSS- 295 (1715)
Q Consensus 258 LaTGS~DGtIrIWDl~tgk~l~tL~gH---------------------------------------s~~Vt--sLafSp- 295 (1715)
+.+|+..|.|+|+-+-+++.+..+.-. .+... .+.+..
T Consensus 16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG 95 (459)
T d1fwxa2 16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 95 (459)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence 557788899999988888777654200 11222 344433
Q ss_pred --CCCEEEEEe-CCCeeEEEECCCCCceEEEeC-CCCCeEEEEecCCCCcceEEEEecCCC------------------c
Q 048801 296 --NNTLVASAS-NDFVIRVWRLPDGLPISVLRG-HTGAVTAIAFSPRPSAIYQLLSSSDDG------------------T 353 (1715)
Q Consensus 296 --Dg~lLASGS-~DGtIrVWDl~tg~~l~~L~g-H~~~VtsLafSPdg~~~~~LaSgS~DG------------------t 353 (1715)
||++|+... .+..|.+-|+.+.++...+.. ....+..++..++.+.. |++.++.+. .
T Consensus 96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~-YV~~~~e~~vP~pndg~~l~d~~~y~~~ 174 (459)
T d1fwxa2 96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNMEDVANYVNV 174 (459)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeE-EEEccCccccccCCCCccccchhhcceE
Confidence 788888876 478899999999988665542 34567777777665544 666655532 3
Q ss_pred EEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC--eEEEEeCCCCCc
Q 048801 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT--FARVWSACKSSV 431 (1715)
Q Consensus 354 VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG--~IrVWDl~t~~~ 431 (1715)
+.++|..+.+....+.+. .....++++++|+++++.+.+. .+.+.++
T Consensus 175 ~t~ID~~tm~V~~QV~V~--------------------------g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~----- 223 (459)
T d1fwxa2 175 FTAVDADKWEVAWQVLVS--------------------------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEM----- 223 (459)
T ss_dssp EEEEETTTTEEEEEEEES--------------------------SCCCCEEECSSSSEEEEEESCTTCCSSHHHH-----
T ss_pred EEEEecCCceEEEEeeeC--------------------------CChhccccCCCCCEEEEEeccccCCcchhhc-----
Confidence 566777776655554332 1245688999999888876432 1111111
Q ss_pred cCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcc
Q 048801 432 EDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGK 511 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~ 511 (1715)
.. ...-..+.|+... ....... ++.-.. +.+.+-|.+...
T Consensus 224 -------------ta-~e~D~i~V~n~~r------ie~av~~------------Gk~~ei----ngV~VVD~~~~~---- 263 (459)
T d1fwxa2 224 -------------TA-AEMDHIVVFNIAE------IEKAIAA------------GDYQEL----NGVKVVDGRKEA---- 263 (459)
T ss_dssp -------------TC-CSEEEEEEEEHHH------HHHHHHH------------TCSEEE----TTEEEEECSGG-----
T ss_pred -------------cc-ccceEEEEechHH------hHHhhhc------------CCcEEe----CCceeecccccC----
Confidence 00 0111112222100 0000000 000000 123444443210
Q ss_pred cccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCc------------
Q 048801 512 VGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGS------------ 578 (1715)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~------------ 578 (1715)
+.....+..-......+.++|||+++++++ .+.+|.|+|+..-.
T Consensus 264 -----------------------~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~ 320 (459)
T d1fwxa2 264 -----------------------SSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 320 (459)
T ss_dssp ------------------------CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred -----------------------CcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence 011111222334456789999999988765 57899999986421
Q ss_pred eEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC----------ceEEEEEcccceEEEE------EEcCCC
Q 048801 579 LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG----------TPIRIYEIGRFKLVDG------KFSPDG 642 (1715)
Q Consensus 579 ~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg----------k~l~tl~~h~~~V~sv------afSPDG 642 (1715)
...... ..-.-...+|.. .+....|---|..|.-|++... ..+..+..|-.+ -.+ ...|||
T Consensus 321 ~~~e~e-lglgPLht~fd~-~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~-gh~~~~~g~t~~~dg 397 (459)
T d1fwxa2 321 VVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP-GHLKTVMGETLDATN 397 (459)
T ss_dssp EEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE-EEEEETTTTSTTCCS
T ss_pred EEeecc-cCcCccccccCC-CceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCC-CCCccCcCCcCCCCC
Confidence 111111 222334567866 4555556668999999998432 445556544322 111 347899
Q ss_pred CEEEEEeC
Q 048801 643 TSIVLSDD 650 (1715)
Q Consensus 643 ~~LAsgs~ 650 (1715)
++|++...
T Consensus 398 k~l~~~nk 405 (459)
T d1fwxa2 398 DWLVCLSK 405 (459)
T ss_dssp SEEEEEES
T ss_pred CEEEEecc
Confidence 99998753
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.07 E-value=0.4 Score=58.26 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=41.7
Q ss_pred CcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 610 GRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 610 GtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
|.|.-||+.+|+.+..+.... +...-..+-.|.+|++|+.||.++.||..+|+.+
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~L 511 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEe
Confidence 457788999999888776432 2222234557888889999999999999999876
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.98 E-value=0.22 Score=60.70 Aligned_cols=68 Identities=7% Similarity=-0.037 Sum_probs=44.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEecCCC----CCeEEEEECCCCCEEEEEe------CCCeeEEEECCCCCceEEEe
Q 048801 256 RFVITGSDDRLVKIWSMETAFCLASCRGHE----GDITDLAVSSNNTLVASAS------NDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 256 ~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs----~~VtsLafSpDg~lLASGS------~DGtIrVWDl~tg~~l~~L~ 324 (1715)
..|+.++.||.|.-.|.++|+.+....-.. ..++.--.-.++ .++.+. .+|.|+-+|+.+|+.+..+.
T Consensus 116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 193 (571)
T d2ad6a1 116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence 467778889999999999999876653211 111111111134 344443 36889999999999988764
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.91 E-value=1.1 Score=51.81 Aligned_cols=78 Identities=13% Similarity=0.094 Sum_probs=47.1
Q ss_pred CCCeeEEEeCCCCCEEEEE-ecCC--eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEe---CCCcEEEEECC
Q 048801 545 PRGVNMIVWSLDNRFVLAA-IMDC--RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG---YDGRTIVWDIW 618 (1715)
Q Consensus 545 ~~~VtslafSPDG~~LaTg-s~DG--tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs---~DGtI~VWDl~ 618 (1715)
...+..-.++..+.+|+.. ..++ .|+++++.++.....+....+.|..+...+.+..+.++-+ .-.++..+|+.
T Consensus 334 ~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~ 413 (430)
T d1qfma1 334 EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413 (430)
T ss_dssp SSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred CcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECC
Confidence 3334443444445555544 4554 5889999888876665555566666655554444444432 23678889998
Q ss_pred CCce
Q 048801 619 EGTP 622 (1715)
Q Consensus 619 tgk~ 622 (1715)
+++.
T Consensus 414 t~~~ 417 (430)
T d1qfma1 414 KEEL 417 (430)
T ss_dssp SSSC
T ss_pred CCCc
Confidence 8853
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.89 E-value=0.87 Score=52.83 Aligned_cols=99 Identities=12% Similarity=-0.003 Sum_probs=63.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCcEEEE-ecCCCCCeEEEEECCCCCEEEEEeCC--------
Q 048801 241 GHRDAVYCAIFDRSGRFVITGS-----DDRLVKIWSMETAFCLAS-CRGHEGDITDLAVSSNNTLVASASND-------- 306 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS-----~DGtIrIWDl~tgk~l~t-L~gHs~~VtsLafSpDg~lLASGS~D-------- 306 (1715)
++.-.+..+++||||++||.+- ....|++.|+.+|+.+.. +.. .....++|++|++.|+-...+
T Consensus 122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~ 199 (430)
T d1qfma1 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDG 199 (430)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccc
Confidence 3443455667899999988542 234799999999987653 321 112468999999988765432
Q ss_pred --------CeeEEEECCCCCc--eEEEeCCC--CCeEEEEecCCCCc
Q 048801 307 --------FVIRVWRLPDGLP--ISVLRGHT--GAVTAIAFSPRPSA 341 (1715)
Q Consensus 307 --------GtIrVWDl~tg~~--l~~L~gH~--~~VtsLafSPdg~~ 341 (1715)
..|.+|.+.+... +..+.... ..+..+..+.++..
T Consensus 200 ~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~ 246 (430)
T d1qfma1 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY 246 (430)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE
T ss_pred cccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcce
Confidence 2577788876533 33343332 34667778888873
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=95.86 E-value=0.23 Score=60.85 Aligned_cols=70 Identities=11% Similarity=0.085 Sum_probs=46.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCe-EEEEECC--CCCEEEEEeC------CCeeEEEECCCCCceEEEe
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI-TDLAVSS--NNTLVASASN------DFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~V-tsLafSp--Dg~lLASGS~------DGtIrVWDl~tg~~l~~L~ 324 (1715)
+.+|+.++.|+.|.-.|..||+.+..+....... ..+.-+| .+..|+.|.. .|.|+-+|+.+|+.+..+.
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~ 199 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence 3578888999999999999999988764211000 0111111 1334555543 4899999999999998764
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=95.51 E-value=0.61 Score=56.42 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=42.2
Q ss_pred CcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 610 GRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 610 GtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
|.|.-||+.+|+.+..+... .+...-.++-.|.++++|+.||.++.+|..+|+.+
T Consensus 438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~L 492 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (560)
T ss_dssp EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEe
Confidence 56888999999998877633 23333334556778889999999999999999876
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.42 E-value=1.8 Score=52.28 Aligned_cols=55 Identities=15% Similarity=0.171 Sum_probs=43.5
Q ss_pred CcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 610 GRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 610 GtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
|.|.-+|+.+|+.+..+..+ .++..-.++..|.++++|+.||.++.||..+|+.+
T Consensus 466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~L 520 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEe
Confidence 57888899999998887743 33443345567888889999999999999999876
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.29 E-value=2.5 Score=45.48 Aligned_cols=203 Identities=11% Similarity=-0.048 Sum_probs=115.1
Q ss_pred ceeEEEEccCCCeEEEe-cCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccc
Q 048801 399 QILCCAYNANGTVFVTG-SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 399 ~VtslafSpdG~~LatG-s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
.+..++|++..+.|.-. ...+.|.-.++..... .......+......+..+++...+
T Consensus 31 ~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~-----~~~~~~~~~~~~~~p~glAvD~~~----------------- 88 (266)
T d1ijqa1 31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-----VSSYDTVISRDIQAPDGLAVDWIH----------------- 88 (266)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC-------------CEEEECSSCSCCCEEEEETTT-----------------
T ss_pred ceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCC-----CcceEEEEeCCCCCcceEEEeecc-----------------
Confidence 36788998876655544 4556676666543210 001111222223345567765433
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
....++-...+.|.+.++...... ..+.........+++.|..
T Consensus 89 --------~~lY~~d~~~~~I~v~~~~g~~~~-----------------------------~~~~~~~~~P~~l~vd~~~ 131 (266)
T d1ijqa1 89 --------SNIYWTDSVLGTVSVADTKGVKRK-----------------------------TLFRENGSKPRAIVVDPVH 131 (266)
T ss_dssp --------TEEEEEETTTTEEEEEETTSSSEE-----------------------------EEEECTTCCEEEEEEETTT
T ss_pred --------ceEEEEecCCCEEEeEecCCceEE-----------------------------EEEcCCCCCcceEEEEccc
Confidence 356666677788888887642210 0111223346788998866
Q ss_pred CEEEEEe--cCCeEEEEECCCCceEEEE-ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEccc--ce
Q 048801 558 RFVLAAI--MDCRICVWNAVDGSLVHSL-TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGR--FK 632 (1715)
Q Consensus 558 ~~LaTgs--~DGtI~IWDl~sg~~l~tL-~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~--~~ 632 (1715)
.+|+... ..+.|...++.. .....+ ...-....+|++.+.++++.++-...+.|...++........+.... ..
T Consensus 132 g~ly~~~~~~~~~I~r~~~dG-s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~ 210 (266)
T d1ijqa1 132 GFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAH 210 (266)
T ss_dssp TEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSS
T ss_pred CeEEEeccCCCcceeEeccCC-CceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccc
Confidence 6665443 334676667643 333444 33345678999998677777777778899999986544433333222 23
Q ss_pred EEEEEEcCCCCEEEEEe-CCCeEEEEECCCCc
Q 048801 633 LVDGKFSPDGTSIVLSD-DVGQIYLLNTGQGE 663 (1715)
Q Consensus 633 V~svafSPDG~~LAsgs-~DG~I~IWdl~tGe 663 (1715)
...+++. +.+|..++ .++.|+..+..+|+
T Consensus 211 p~~lav~--~~~ly~td~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 211 PFSLAVF--EDKVFWTDIINEAIFSANRLTGS 240 (266)
T ss_dssp EEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred cEEEEEE--CCEEEEEECCCCeEEEEECCCCc
Confidence 4556665 34555554 56788888877764
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.24 E-value=0.39 Score=55.52 Aligned_cols=70 Identities=13% Similarity=0.081 Sum_probs=48.1
Q ss_pred EEEEEccCCCcEEEEEeCCCcEEEEECCCC------------ceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 591 YVLDVHPFNPRIAMSAGYDGRTIVWDIWEG------------TPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 591 ~sLafSP~dg~lLaSgs~DGtI~VWDl~tg------------k~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
..+.++|++..+++++..+.+|-|+|+..- ..+.....+ -.-...+|...|....+---|.+|.-|+
T Consensus 278 HGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elg-lgPLht~fd~~g~aytslfids~v~kw~ 356 (459)
T d1fwxa2 278 HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG-LGPLHTAFDGRGNAYTSLFLDSQVVKWN 356 (459)
T ss_dssp CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCC-SCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred CceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccC-cCccccccCCCceEEEEeeccceEEEEe
Confidence 467899977777777788999999998531 111222212 2344568988886555566899999999
Q ss_pred CCC
Q 048801 659 TGQ 661 (1715)
Q Consensus 659 l~t 661 (1715)
+..
T Consensus 357 ~~~ 359 (459)
T d1fwxa2 357 IED 359 (459)
T ss_dssp HHH
T ss_pred cch
Confidence 853
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.10 E-value=2.8 Score=45.02 Aligned_cols=202 Identities=8% Similarity=-0.067 Sum_probs=119.5
Q ss_pred cceeEEEEccCCCeEEE-ecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccc
Q 048801 398 HQILCCAYNANGTVFVT-GSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476 (1715)
Q Consensus 398 ~~VtslafSpdG~~Lat-Gs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~ 476 (1715)
..+..++|....+.|.. -...+.|+..++..... ...+......+..+++..-+
T Consensus 36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~---------~~v~~~~~~~p~~iAvD~~~---------------- 90 (263)
T d1npea_ 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP---------TTIIRQDLGSPEGIALDHLG---------------- 90 (263)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---------EEEECTTCCCEEEEEEETTT----------------
T ss_pred CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc---------EEEEEeccccccEEEEeccC----------------
Confidence 34678899876655444 45667888888765321 11222223456777776433
Q ss_pred ccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC
Q 048801 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD 556 (1715)
Q Consensus 477 ~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD 556 (1715)
....++-...+.|.+.++...... .........+..+++.|.
T Consensus 91 ---------~~lY~~d~~~~~I~~~~~dg~~~~-----------------------------~l~~~~l~~p~~l~vdp~ 132 (263)
T d1npea_ 91 ---------RTIFWTDSQLDRIEVAKMDGTQRR-----------------------------VLFDTGLVNPRGIVTDPV 132 (263)
T ss_dssp ---------TEEEEEETTTTEEEEEETTSCSCE-----------------------------EEECSSCSSEEEEEEETT
T ss_pred ---------CeEEEeccCCCEEEEEecCCceEE-----------------------------EEecccccCCcEEEEecc
Confidence 245556667778888887642210 001111235778999987
Q ss_pred CCEEEEEecC-C--eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceE
Q 048801 557 NRFVLAAIMD-C--RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKL 633 (1715)
Q Consensus 557 G~~LaTgs~D-G--tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V 633 (1715)
..+|+..... + .|..-++............-....+|++.+.++++.++-...+.|...++........+.+.. ..
T Consensus 133 ~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P 211 (263)
T d1npea_ 133 RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YP 211 (263)
T ss_dssp TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SE
T ss_pred cCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-Cc
Confidence 7777654332 2 344445543333333333345568999988677777776678899999986544444444323 34
Q ss_pred EEEEEcCCCCEEEEEe-CCCeEEEEECCCCccc
Q 048801 634 VDGKFSPDGTSIVLSD-DVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 634 ~svafSPDG~~LAsgs-~DG~I~IWdl~tGe~~ 665 (1715)
..+++. +.+|..++ ..+.|...+..+|+..
T Consensus 212 ~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~ 242 (263)
T d1npea_ 212 FAVTSY--GKNLYYTDWKTNSVIAMDLAISKEM 242 (263)
T ss_dssp EEEEEE--TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEEE--CCEEEEEECCCCEEEEEECCCCccc
Confidence 566664 55666554 5678888888877643
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.97 E-value=3.1 Score=44.73 Aligned_cols=163 Identities=10% Similarity=-0.022 Sum_probs=101.3
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEE-EEeCCCeeEEEECCC
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGS-DDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVA-SASNDFVIRVWRLPD 316 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS-~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLA-SGS~DGtIrVWDl~t 316 (1715)
+..+...|.+|+|+...+.|.... .++.|...++..+.....+......+.+|++..-+..|+ +-...+.|.+.++..
T Consensus 31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg 110 (263)
T d1npea_ 31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG 110 (263)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence 334445688899998877777664 567898888876665555555556789999987666665 445577999999875
Q ss_pred CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEE--ecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 317 GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW--DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 317 g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIW--Dl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
......+...-..+..|++.|.... ++.+-...+..+|| ++..... ..+..
T Consensus 111 ~~~~~l~~~~l~~p~~l~vdp~~g~--ly~t~~~~~~~~I~r~~~dG~~~-~~i~~------------------------ 163 (263)
T d1npea_ 111 TQRRVLFDTGLVNPRGIVTDPVRGN--LYWTDWNRDNPKIETSHMDGTNR-RILAQ------------------------ 163 (263)
T ss_dssp CSCEEEECSSCSSEEEEEEETTTTE--EEEEECCSSSCEEEEEETTSCCC-EEEEC------------------------
T ss_pred ceEEEEecccccCCcEEEEecccCc--EEEeecCCCCcEEEEecCCCCCc-eeeee------------------------
Confidence 5544444444467899999998773 22232222233344 4432211 11110
Q ss_pred CCCcceeEEEEccCCCeE-EEecCCCeEEEEeCCC
Q 048801 395 LQSHQILCCAYNANGTVF-VTGSSDTFARVWSACK 428 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~L-atGs~DG~IrVWDl~t 428 (1715)
..-.....+++.+.++.| ++-...+.|...++..
T Consensus 164 ~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g 198 (263)
T d1npea_ 164 DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ 198 (263)
T ss_dssp TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred ecccccceEEEeecCcEEEEEeCCCCEEEEEECCC
Confidence 011235789998776655 4445667888888864
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.85 E-value=3.3 Score=44.49 Aligned_cols=232 Identities=9% Similarity=-0.066 Sum_probs=128.2
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
.|+-.++.+......+. ....+.+|+|.+..+. ...+-...+.|.-.++.........
T Consensus 11 ~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~--lYw~D~~~~~I~~~~l~~~~~~~~~------------------- 68 (266)
T d1ijqa1 11 EVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNR--IYWSDLSQRMICSTQLDRAHGVSSY------------------- 68 (266)
T ss_dssp SEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTE--EEEEETTTTEEEEEEC--------C-------------------
T ss_pred eEEEEECCCCcceeeeC-CCCceEEEEEEeCCCE--EEEEECCCCEEEEEEecCCCCCcce-------------------
Confidence 58888987665444444 5567789999987663 3334445566666555432110000
Q ss_pred CCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccc
Q 048801 388 GPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSA 466 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~ 466 (1715)
..........+..+++.+-+ ++.++-...+.|.+.++.... ....+.........+++.|..
T Consensus 69 --~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~---------~~~~~~~~~~~P~~l~vd~~~------ 131 (266)
T d1ijqa1 69 --DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---------RKTLFRENGSKPRAIVVDPVH------ 131 (266)
T ss_dssp --EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS---------EEEEEECTTCCEEEEEEETTT------
T ss_pred --EEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCce---------EEEEEcCCCCCcceEEEEccc------
Confidence 00000112335678887644 455555567889999986532 122233344566778887743
Q ss_pred ccccccccccccccCCcccCceEEEE-cCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccccc-CC
Q 048801 467 MSDAFKEENVPKFKNSWFCHDNIVTC-SRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLL-PT 544 (1715)
Q Consensus 467 ~~~~~~~~~~~~~~~s~~~~~~LaSg-S~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~-~h 544 (1715)
+..+++. +..+.|...++... ....+. ..
T Consensus 132 -------------------g~ly~~~~~~~~~I~r~~~dGs------------------------------~~~~l~~~~ 162 (266)
T d1ijqa1 132 -------------------GFMYWTDWGTPAKIKKGGLNGV------------------------------DIYSLVTEN 162 (266)
T ss_dssp -------------------TEEEEEECSSSCEEEEEETTSC------------------------------CEEEEECSS
T ss_pred -------------------CeEEEeccCCCcceeEeccCCC------------------------------ceecccccc
Confidence 1222222 22334444444321 111111 12
Q ss_pred CCCeeEEEeCCCCCEEEEE-ecCCeEEEEECCCCceEEEEecC--CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 545 PRGVNMIVWSLDNRFVLAA-IMDCRICVWNAVDGSLVHSLTGH--SASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 545 ~~~VtslafSPDG~~LaTg-s~DGtI~IWDl~sg~~l~tL~gH--~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
-...+.+++++.+..|..+ ...+.|...++........+... .....+|++. ++.+..+-..++.|...+..+|.
T Consensus 163 ~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS 240 (266)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred cceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCc
Confidence 2346789999877766655 55678999898654443333332 2345677775 45677776678889888888887
Q ss_pred eEEEEEcc
Q 048801 622 PIRIYEIG 629 (1715)
Q Consensus 622 ~l~tl~~h 629 (1715)
....+...
T Consensus 241 ~~~~~~~~ 248 (266)
T d1ijqa1 241 DVNLLAEN 248 (266)
T ss_dssp CCEEEECS
T ss_pred ceEEEEcC
Confidence 77666543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.97 E-value=20 Score=41.07 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=29.7
Q ss_pred EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCc
Q 048801 321 SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365 (1715)
Q Consensus 321 ~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l 365 (1715)
.++...-...++|+|.|++. +|++--..|.|++++..++...
T Consensus 20 ~~ia~~L~~P~~la~~pdg~---llVter~~G~i~~v~~~~g~~~ 61 (450)
T d1crua_ 20 KVILSNLNKPHALLWGPDNQ---IWLTERATGKILRVNPESGSVK 61 (450)
T ss_dssp EEEECCCSSEEEEEECTTSC---EEEEETTTCEEEEECTTTCCEE
T ss_pred EEEECCCCCceEEEEeCCCe---EEEEEecCCEEEEEECCCCcEe
Confidence 33333345678999999997 5666555799999988776643
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.79 E-value=19 Score=39.16 Aligned_cols=252 Identities=9% Similarity=0.069 Sum_probs=137.9
Q ss_pred CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 306 DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 306 DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
...|.|-|+.++..+..-. -..-+.-.+|..+ .|+.-+ ..+|.++|+.+.+.+....++.
T Consensus 44 ~~~VvIidl~n~~~~~Rrp---i~AdsAIMhP~~~---IiALra-g~~LQiFnletK~klks~~~~e------------- 103 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASK---VIALKA-GKTLQIFNIEMKSKMKAHTMTD------------- 103 (327)
T ss_dssp EEEEEEEETTSTTSCEEEE---CCCSEEEECSSSS---EEEEEE-TTEEEEEETTTTEEEEEEECSS-------------
T ss_pred CceEEEEECCCCCcceecc---cchhhhhcCCCCc---EEEEec-CCeEEEEehhHhhhhceEEcCC-------------
Confidence 3478888987765432211 1122344667765 444444 5689999999988777665533
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCC----CCeeEEEEccCcc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE----NDVNYVQFSGCAV 461 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~----~~V~sLafspdg~ 461 (1715)
.|.-=.|-.+ +.|+..+ +..|+-|++.... .| ...+..|. ..|.....+++.
T Consensus 104 -------------~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s-----~P---~k~fdR~~~L~~~QIInY~~d~~~- 159 (327)
T d1utca2 104 -------------DVTFWKWISL-NTVALVT-DNAVYHWSMEGES-----QP---VKMFDRHSSLAGCQIINYRTDAKQ- 159 (327)
T ss_dssp -------------CCCEEEESSS-SEEEEEC-SSEEEEEESSSSC-----CC---EEEEECCGGGTTCEEEEEEECTTS-
T ss_pred -------------CcEEEEecCC-CEEEEEc-CCceEEEcccCCC-----Cc---hhhhhhcccccCceEEEEEECCCC-
Confidence 2434455444 3444443 4679999985421 22 33333332 244444444443
Q ss_pred cccccccccccccccccccCCcccCceEEEEc-------CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-------RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-------~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
+.++..+ -.|.+.+|....+..
T Consensus 160 -------------------------kW~~l~GI~~~~~~i~G~mQLYS~er~~s-------------------------- 188 (327)
T d1utca2 160 -------------------------KWLLLTGISAQQNRVVGAMQLYSVDRKVS-------------------------- 188 (327)
T ss_dssp -------------------------CEEEEEEEEEETTEEEEEEEEEETTTTEE--------------------------
T ss_pred -------------------------CEEEEEeEecCCCceeEEEEEEEeccCcC--------------------------
Confidence 2222221 236778887764321
Q ss_pred CCCcccccCCCCCeeEEEeCCC--C-CEEEE---EecCCeEEEEECCCCc---e---E--EEEe----cCCCCeEEEEEc
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLD--N-RFVLA---AIMDCRICVWNAVDGS---L---V--HSLT----GHSASSYVLDVH 596 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPD--G-~~LaT---gs~DGtI~IWDl~sg~---~---l--~tL~----gH~~~V~sLafS 596 (1715)
+.+.+|......+.+.-+ - ..++. +...+.++|.++.... . . ..+. .-.+--.++..+
T Consensus 189 ----Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs 264 (327)
T d1utca2 189 ----QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS 264 (327)
T ss_dssp ----EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEE
T ss_pred ----ccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEee
Confidence 112222222221111110 0 11111 2233678888885521 1 1 1111 123344577777
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEE
Q 048801 597 PFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLL 657 (1715)
Q Consensus 597 P~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IW 657 (1715)
+ .-.++..-+.-|.|++||+.+|.++..-+.....|...+-.....-+++....|.|..-
T Consensus 265 ~-kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~v 324 (327)
T d1utca2 265 E-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSV 324 (327)
T ss_dssp T-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred c-cCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEEE
Confidence 7 44566667889999999999999998887777777766666665566666677776644
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=88.32 E-value=12 Score=41.79 Aligned_cols=201 Identities=13% Similarity=0.121 Sum_probs=113.0
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEEC------CCCCEEEEEeC--C--CeeEEEECCC-CCceE
Q 048801 253 RSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVS------SNNTLVASASN--D--FVIRVWRLPD-GLPIS 321 (1715)
Q Consensus 253 pDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafS------pDg~lLASGS~--D--GtIrVWDl~t-g~~l~ 321 (1715)
|+..+|+.....+-|.+||+. |+.++.+. .+.+..|..- ....-|+.++. + .+|.+|.+.. ...+.
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence 445677777777779999986 88888775 3456655543 22334555553 2 3677887752 23333
Q ss_pred EEeCC-------CCCeEEEEe--cCCCCcceEEEEecCCCcEEEEecCCCC---CcceecCCCCCCCccCccCCCCCCCC
Q 048801 322 VLRGH-------TGAVTAIAF--SPRPSAIYQLLSSSDDGTCRIWDARYSQ---YSPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 322 ~L~gH-------~~~VtsLaf--SPdg~~~~~LaSgS~DGtVrIWDl~tg~---~l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
.+... ...++.+|+ ++..... ++++...+|.+..|.+.... .......
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~-~afv~~k~G~v~q~~l~~~~~g~v~~~lvr------------------- 174 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKY-YAMVTGKEGEFEQYELNADKNGYISGKKVR------------------- 174 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCE-EEEEECSSSEEEEEEEEECTTSSEEEEEEE-------------------
T ss_pred cccccccccccccCcceEEEEEecCCCCeE-EEEEEcCCceEEEEEEEcCCCCceeeEeee-------------------
Confidence 33221 124667777 5654433 67777889999988774321 1110000
Q ss_pred CCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecC--CCCCeeEEEEccCcccccccc
Q 048801 390 SSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG--HENDVNYVQFSGCAVASRSAM 467 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g--H~~~V~sLafspdg~as~~~~ 467 (1715)
......++-.|++......|..+-++..|..+++.... ......+....+ ....+..|+.-....
T Consensus 175 ---~f~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~----~~~~~~i~~~~g~~l~~D~EGlaiy~~~~------ 241 (353)
T d1h6la_ 175 ---AFKMNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDG----GSNGTVIDRADGRHLTPDIEGLTIYYAAD------ 241 (353)
T ss_dssp ---EEECSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTS----CSCCEEEEECSSSSCCSCEEEEEEEECGG------
T ss_pred ---ccCCCCccceEEEeCCCCcEEEecCccceEEEEeccCC----CccceeeecccCccccCCccccEEEEcCC------
Confidence 00113357889999988888888777766666654211 111122222211 345666666543210
Q ss_pred cccccccccccccCCcccCceEEEEcCCCeEEEEecCC
Q 048801 468 SDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 505 (1715)
Q Consensus 468 ~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t 505 (1715)
-.+-+|++.-.+++..|||..+
T Consensus 242 ----------------~~GylivSsQG~n~f~vydr~~ 263 (353)
T d1h6la_ 242 ----------------GKGYLLASSQGNSSYAIYERQG 263 (353)
T ss_dssp ----------------GCEEEEEEEGGGTEEEEEESST
T ss_pred ----------------CCeEEEEEcCCCCeEEEEecCC
Confidence 0013556666788999998865
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=83.26 E-value=9.3 Score=42.43 Aligned_cols=102 Identities=11% Similarity=-0.055 Sum_probs=61.2
Q ss_pred CCeeEEEeCCCCCEEEEEec---------------CCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCC
Q 048801 546 RGVNMIVWSLDNRFVLAAIM---------------DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDG 610 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~---------------DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DG 610 (1715)
...+.|++..+|.+++|-.. -+...+|....++...... .-...+.|+++|++..++++-...+
T Consensus 150 ~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~ 228 (340)
T d1v04a_ 150 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-GFDFANGINISPDGKYVYIAELLAH 228 (340)
T ss_dssp SSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE-EESSEEEEEECTTSSEEEEEEGGGT
T ss_pred cCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC-CCCccceeEECCCCCEEEEEeCCCC
Confidence 34788899899998888321 1233444444444332233 3345789999996667777778889
Q ss_pred cEEEEECCCCceEEEEE--cccceEEEEEEcC-CCCEEEEE
Q 048801 611 RTIVWDIWEGTPIRIYE--IGRFKLVDGKFSP-DGTSIVLS 648 (1715)
Q Consensus 611 tI~VWDl~tgk~l~tl~--~h~~~V~svafSP-DG~~LAsg 648 (1715)
+|++|++.....+.... .-.+..-.+.+.+ +|.+.+++
T Consensus 229 ~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 229 KIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp EEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred eEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 99999987543332221 1233455677765 44444443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=83.23 E-value=24 Score=39.20 Aligned_cols=83 Identities=10% Similarity=0.024 Sum_probs=56.6
Q ss_pred CCCeeEEEeCCCCCEEEEEecCCeEEEEECCC-----CceEEEEec--CCCCeEEEEEcc--C-CCcEEEEEeCCCcEEE
Q 048801 545 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD-----GSLVHSLTG--HSASSYVLDVHP--F-NPRIAMSAGYDGRTIV 614 (1715)
Q Consensus 545 ~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s-----g~~l~tL~g--H~~~V~sLafSP--~-dg~lLaSgs~DGtI~V 614 (1715)
...+..|++......|+.+-.+.-|+.+++.- +..+....+ ..+.+-.|+.-. + .+.+|+|.-.+++..|
T Consensus 179 ~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~v 258 (353)
T d1h6la_ 179 NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAI 258 (353)
T ss_dssp SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEE
Confidence 44688999999999999998887777776642 223323222 356677777543 2 3467777777899999
Q ss_pred EECCC-CceEEEEE
Q 048801 615 WDIWE-GTPIRIYE 627 (1715)
Q Consensus 615 WDl~t-gk~l~tl~ 627 (1715)
||... .+.+..|.
T Consensus 259 ydr~~~~~~~g~F~ 272 (353)
T d1h6la_ 259 YERQGQNKYVADFQ 272 (353)
T ss_dssp EESSTTCCEEEEEE
T ss_pred EecCCCccccceEE
Confidence 99876 36666665
|
| >d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: Tudor/PWWP/MBT family: Tudor domain domain: Survival motor neuron protein 1, smn species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.73 E-value=1 Score=37.50 Aligned_cols=54 Identities=24% Similarity=0.538 Sum_probs=41.5
Q ss_pred CCCCCCcceEEeecccCCCCCceEEEEEEEcccCCCCCCCCCCceeEEEECC-CCCCCCCCCccCCC
Q 048801 1534 RNWTHRDKCQIWWRNANGEGGTWWKGRITKSQAKSEEFPNSPWDRYMVEYKT-GDSHLHSPWEMHDP 1599 (1715)
Q Consensus 1534 ~~w~~g~rf~~~~~~e~~~~~~w~~GtI~~~~~~~p~~P~S~w~~l~V~wd~-~~~~~~SpWeie~~ 1599 (1715)
++|++|+.|...|. ..+.||.++|.++.+.. ..+.|.+.. |+.+.|+.=+|.|+
T Consensus 2 ~~wkvG~~C~A~~s----~Dg~wYRA~I~~v~~~~--------~~~~V~fvDYGn~e~V~~~~l~~~ 56 (59)
T d1mhna_ 2 QQWKVGDKCSAIWS----EDGCIYPATIASIDFKR--------ETCVVVYTGYGNREEQNLSDLLSP 56 (59)
T ss_dssp CCCCTTCEEEEECT----TTSCEEEEEEEEEETTT--------TEEEEEETTTTEEEEEEGGGCBCT
T ss_pred CcCCcCCEEEEEEC----CCCCEEEEEEEEEcCCC--------CEEEEEEEeCCCEEEEEHHHCcCC
Confidence 68999999999663 24579999999985332 368899988 88888887666554
|