Psyllid ID: psy10008

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
ALKQDVQETLSSSLKLCRLQDTSHLDFKEDVLTIEKSEENSVEAMSMQVSSTSSSASSSVASLPSLACGESHTLMCASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECHGALRLLEAVGIAHLALKLILVSSHSDRYKEVYHLETHLQDMRPEDLYQYV
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHcccHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEccccccEEEEccccccccEEEEcccEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEccccccEEEEEccEEEEEcccHccccHHHHHHHcccccccccccEEEEccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHEEcc
Coil and Loop (DISEMBL)
ALKQDVQETLSSSlklcrlqdtshldfkeDVLTIEKSEENSVEAMSMQVsstsssasssvaslpslacgeshtlMCASNkikmqtsnakgrhviavedvhkgdtlfvekpvafvilppcsmsncnhcctsisapipcnecILAVYCSESCRREAWLRYHRWECHGALRLLEAVGIAHLALKLILVSSHSDRYKEVYHLethlqdmrpedlyqyv
Flexible Loop (DISEMBL)
ALKQDVQETLSsslklcrlqdtshldfkedVLTIEKSEENSVEAMSMQVSSTSSSASSSVASLPSLACGESHTLMCASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECHGALRLLEAVGIAHLALKLILVSSHSDRYKEVYHlethlqdmrpedlyqyv
Low Complexity Region (SEG)
ALKQDVQETLSSSLKLCRLQDTSHLDFKEDVLTIEKSEENSVEamsmqvsstsssasssvaslpslaCGESHTLMCASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECHGALRLLEAVGIAHLALKLILVSSHSDRYKEVYHLETHLQDMRPEDLYQYV
Disordered region (IsUnstruct)
************************************************************************TLMCA**********AKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECHGALRLLEAVGIAHLALKLILVSSHSDRYKEVYHLETHL************
Disordered Region (DISOPRED)
*******ETLSSSLK**********************************************************LMCASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECHGALRLLEAVGIAHLALKLILVSSHSDRYKEVYHLETHLQDMRP*DLYQYV
Disordered Region (DISEMBL)
***********SSLKLCRLQDTSHLDFKEDVLTIEKSE**************************SLACGESHTLMCASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECHGALRLLEAVGIAHLALKLILVSSHSDRYKEVYHLETHLQDMRPEDLYQYV
Disordered Region (DISPRO)
ALKQDVQETLSSSLKLCRLQDTSHLDFKEDVLTIEKSEENSVEA******************LPSLACGESHTLMCASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECHGALRLLEAVGIAHLALKLILVSSHSDRYKEVYHLETHLQDMRPEDLYQYV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ALKQDVQETLSSSLKLCRLQDTSHLDFKEDVLTIEKSEENSVEAMSMQVSSTSSSASSSVASLPSLACGESHTLMCASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECHGALRLLEAVGIAHLALKLILVSSHSDRYKEVYHLETHLQDMRPEDLYQYV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	214	2.2.26 [Sep-21-2011]
Q5F3V0	742	SET and MYND domain-conta	yes	N/A	0.485	0.140	0.341	1e-10
Q5R5X9	804	SET and MYND domain-conta	yes	N/A	0.579	0.154	0.309	7e-10
Q8BTK5	799	SET and MYND domain-conta	yes	N/A	0.574	0.153	0.315	2e-09
Q8IYR2	804	SET and MYND domain-conta	yes	N/A	0.602	0.160	0.312	2e-09
Q9CWR2	428	Histone-lysine N-methyltr	no	N/A	0.565	0.282	0.255	1e-05
P97443	490	SET and MYND domain-conta	no	N/A	0.383	0.167	0.289	3e-05
Q8NB12	490	SET and MYND domain-conta	no	N/A	0.406	0.177	0.272	8e-05
Q9H7B4	428	Histone-lysine N-methyltr	no	N/A	0.602	0.301	0.246	0.0001
Q9NRG4	433	N-lysine methyltransferas	no	N/A	0.359	0.177	0.320	0.0003
Q557F7	386	SET and MYND domain-conta	yes	N/A	0.425	0.235	0.263	0.0004

>sp|Q5F3V0|SMYD4_CHICK SET and MYND domain-containing protein 4 OS=Gallus gallus GN=SMYD4 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 62/126 (49%), Gaps = 22/126 (17%)

Query: 86  SNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPP----------------CSMSN----CN 125
           S  +GRH++A +D+  G  L  EK    V+ P                   ++N    C+
Sbjct: 237 STERGRHLVASQDILPGQNLLKEKAFVSVLCPGEGDSLLLQDSSETVWDTRVTNADLYCH 296

Query: 126 HCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECH-GALRLLEAVGIAHLALKLIL 184
           HC   + A IPC  C  A YCS++C   AW +YHR EC  GAL L   V   H+AL+ +L
Sbjct: 297 HCLKQLLASIPCCGCSYAKYCSQNCADVAWEQYHRTECPLGALLLTLGV-FFHVALRTVL 355

Query: 185 VSSHSD 190
           ++  S+
Sbjct: 356 LAGFSE 361

Gallus gallus (taxid: 9031)

>sp|Q5R5X9|SMYD4_PONAB SET and MYND domain-containing protein 4 OS=Pongo abelii GN=SMYD4 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 18/142 (12%)

Query: 70  ESHTLMCASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVI----LPP------- 118
           E+  L  AS+ + +     KGR+++A +D+  G+ L  E     V+    LPP       
Sbjct: 224 ENEQLSSASSSVGLCIDPLKGRYLVATKDILPGELLVKEDAFVSVLNPGELPPPHHGLDS 283

Query: 119 ---CSMSN----CNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECHGALRLLE 171
                ++N    C+ C     A +PC+ C  A YCS+ C ++AW  YHR EC     LL 
Sbjct: 284 KWDTRVTNGDLYCHRCLKHTLATVPCDGCSYAKYCSQECLQQAWELYHRTECPLGGLLLT 343

Query: 172 AVGIAHLALKLILVSSHSDRYK 193
                H+AL+L L+    D  K
Sbjct: 344 LGVFCHIALRLTLLVGFEDVRK 365

Pongo abelii (taxid: 9601)

>sp|Q8BTK5|SMYD4_MOUSE SET and MYND domain-containing protein 4 OS=Mus musculus GN=Smyd4 PE=2 SV=2

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 23/146 (15%)

Query: 66  LACGESHT-LMCASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFV-ILPPCSMSN 123
           +A GE +T +  AS  + + T   KGRH++A +D+  G+ L  E   AFV +L P  M  
Sbjct: 219 IALGEENTQISGASLSVSLCTHPLKGRHLVATKDILPGELLVKED--AFVSVLIPGEMPR 276

Query: 124 -------------------CNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECH 164
                              C+ C     A +PC  C  A YCS+ C ++AW  YH  EC 
Sbjct: 277 PHHCLENKWDTRVTSGDLYCHRCLKHTLATVPCGSCSYAKYCSQECMQQAWDLYHSTECS 336

Query: 165 GALRLLEAVGIAHLALKLILVSSHSD 190
               LL      H+AL++ L++   D
Sbjct: 337 LGGLLLTLGVFCHVALRMTLLARFED 362

Mus musculus (taxid: 10090)

>sp|Q8IYR2|SMYD4_HUMAN SET and MYND domain-containing protein 4 OS=Homo sapiens GN=SMYD4 PE=2 SV=3

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 18/147 (12%)

Query: 70  ESHTLMCASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVI----LPP------- 118
           E+  L  AS+ I +     KGR ++A +D+  G+ L  E     V+    LPP       
Sbjct: 224 ENEQLSNASSSIGLCVDPLKGRCLVATKDILPGELLVQEDAFVSVLNPGELPPPHHGLDS 283

Query: 119 ---CSMSN----CNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECHGALRLLE 171
                ++N    C+ C     A +PC+ C  A YCS+ C ++AW  YHR EC     LL 
Sbjct: 284 KWDTRVTNGDLYCHRCLKHTLATVPCDGCSYAKYCSQECLQQAWELYHRTECPLGGLLLT 343

Query: 172 AVGIAHLALKLILVSSHSDRYKEVYHL 198
                H+AL+L L+    D  K +  L
Sbjct: 344 LGVFCHIALRLTLLVGFEDVRKIITKL 370

Homo sapiens (taxid: 9606)

>sp|Q9CWR2|SMYD3_MOUSE Histone-lysine N-methyltransferase SMYD3 OS=Mus musculus GN=Smyd3 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 16/137 (11%)

Query: 80  KIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNE 139
           K++  T+  +G  + AV  +  G+ LF   P+A+ +        C+ C       + C++
Sbjct: 5   KVEKFTTANRGNGLRAVAPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQ 64

Query: 140 CILAVYCSESCRREAWLRYHRWECH-----------GALRLLEAVGIAHLALKLILVSSH 188
           C +A YCS  C+++AW   HR EC             ++RLL  V +  +  K     S 
Sbjct: 65  CRIAKYCSAKCQKKAWPD-HRRECSCLKSCKPRYPPDSVRLLGRVIVKLMDEK----PSE 119

Query: 189 SDRYKEVYHLETHLQDM 205
           S++    Y LE+++  +
Sbjct: 120 SEKLYSFYDLESNISKL 136

Histone methyltransferase. Specifically methylates 'Lys-4' of histone H3, inducing di- and tri-methylation, but not monomethylation. Plays an important role in transcriptional activation as a member of an RNA polymerase complex. Binds DNA containing 5'-CCCTCC-3' or 5'-GAGGGG-3' sequences.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|P97443|SMYD1_MOUSE SET and MYND domain-containing protein 1 OS=Mus musculus GN=Smyd1 PE=1 SV=3

 Score = 48.5 bits (114), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 81  IKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNEC 140
           +++ TS  KGR + A ++    D +F E+  + V+        C+ C         C +C
Sbjct: 9   VEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQC 68

Query: 141 ILAVYCSESCRREAWLRYHRWEC 163
             A YC  +C+++AWL  H+ EC
Sbjct: 69  KFAHYCDRTCQKDAWLN-HKNEC 90

Acts as a transcriptional repressor. Essential for cardiomyocyte differentiation and cardiac morphogenesis.

Mus musculus (taxid: 10090)

>sp|Q8NB12|SMYD1_HUMAN SET and MYND domain-containing protein 1 OS=Homo sapiens GN=SMYD1 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 81  IKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNEC 140
           +++ T+  KGR + A ++    D +F E+  + V+        C+ C         C +C
Sbjct: 9   VEVFTAEGKGRGLKATKEFWAADIIFAERAYSAVVFDSLVNFVCHTCFKRQEKLHRCGQC 68

Query: 141 ILAVYCSESCRREAWLRYHRWECHGALR 168
             A YC  +C+++AWL  H+ EC    R
Sbjct: 69  KFAHYCDRTCQKDAWLN-HKNECSAIKR 95

Acts as a transcriptional repressor. Essential for cardiomyocyte differentiation and cardiac morphogenesis.

Homo sapiens (taxid: 9606)

>sp|Q9H7B4|SMYD3_HUMAN Histone-lysine N-methyltransferase SMYD3 OS=Homo sapiens GN=SMYD3 PE=1 SV=4

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 21/150 (14%)

Query: 80  KIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNE 139
           K++   +  +G  + AV  +  G+ LF   P+A+ +        C+ C       + C++
Sbjct: 5   KVEKFATAKRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQ 64

Query: 140 CILAVYCSESCRREAWLRYHRWECH-----------GALRLLEAVGIAHLALKLI-LVSS 187
           C +A YCS  C+++AW   H+ EC             ++RLL       +  KL+    S
Sbjct: 65  CRVAKYCSAKCQKKAWPD-HKRECKCLKSCKPRYPPDSVRLL-----GRVVFKLMDGAPS 118

Query: 188 HSDRYKEVYHLETHLQDM---RPEDLYQYV 214
            S++    Y LE+++  +   + E L Q V
Sbjct: 119 ESEKLYSFYDLESNINKLTEDKKEGLRQLV 148

Histone methyltransferase. Specifically methylates 'Lys-4' of histone H3, inducing di- and tri-methylation, but not monomethylation. Plays an important role in transcriptional activation as a member of an RNA polymerase complex. Binds DNA containing 5'-CCCTCC-3' or 5'-GAGGGG-3' sequences.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9NRG4|SMYD2_HUMAN N-lysine methyltransferase SMYD2 OS=Homo sapiens GN=SMYD2 PE=1 SV=2

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 86  SNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVY 145
           S  KGR + A++    GD LF     A+V+      ++C +C T       C  C  A Y
Sbjct: 14  SPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFY 73

Query: 146 CSESCRREAWLRYHRWEC 163
           C+  C++E W   H+ EC
Sbjct: 74  CNVECQKEDW-PMHKLEC 90

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1. Monomethylates 'Lys-370' of p53/TP53, leading to decreased DNA-binding activity and subsequent transcriptional regulation activity of p53/TP53. Monomethylates 'Lys-860' of RB1/RB.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q557F7|Y3589_DICDI SET and MYND domain-containing protein DDB_G0273589 OS=Dictyostelium discoideum GN=DDB_G0273589 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 79  NKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIP-- 136
           N +++++S  +GR++IA  D+  G+ L   K    V       ++C +C   + + I   
Sbjct: 6   NGLELKSSENEGRYLIATRDIQIGEDLLKCKSYFAVTSETLKTTSCFNCIKQLPSVIKLS 65

Query: 137 --CNECILAVYCSESCRREAWLRYHRWECHGALRL 169
             CN+C    YC+E C+ E   ++  +EC    +L
Sbjct: 66  LKCNQCNEIWYCNEQCKNENINKHQHYECKFYKKL 100

Probable methyltransferase.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
240981045	770	SET and MYND domain-containing protein (	0.710	0.197	0.377	2e-25
332021392	749	SET and MYND domain-containing protein 4	0.780	0.222	0.358	5e-25
345493155	737	PREDICTED: SET and MYND domain-containin	0.705	0.204	0.388	8e-25
391335768	775	PREDICTED: SET and MYND domain-containin	0.635	0.175	0.433	2e-23
307170062	333	SET and MYND domain-containing protein 4	0.742	0.477	0.363	2e-23
328698846	742	PREDICTED: SET and MYND domain-containin	0.658	0.190	0.384	6e-23
340720588	735	PREDICTED: SET and MYND domain-containin	0.971	0.282	0.351	4e-22
291242073	669	PREDICTED: predicted protein-like [Sacco	0.780	0.249	0.321	7e-22
350401158	662	PREDICTED: SET and MYND domain-containin	0.579	0.187	0.426	1e-21
449672885	729	PREDICTED: SET and MYND domain-containin	0.887	0.260	0.334	2e-21

>gi|240981045|ref|XP_002403605.1| SET and MYND domain-containing protein (SMYD), putative [Ixodes scapularis] gi|215491387|gb|EEC01028.1| SET and MYND domain-containing protein (SMYD), putative [Ixodes scapularis]

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 93/172 (54%), Gaps = 20/172 (11%)

Query: 61  ASLPSLACGESHTLMCASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCS 120
           + +P +A G   T+   S  + M  S  KGR ++A  D+  GD +FVE+P A V+LP  +
Sbjct: 225 SQVPDVAYGAHGTVPSCSMAVDMLYSTEKGRFLVANRDLQPGDAIFVERPYASVLLPGHT 284

Query: 121 MSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECHGALRLLEAVGIAHLAL 180
            +NC HC   +   +PC +C    YCS +C +++W  YHRWEC G L LL +VGIAHLA+
Sbjct: 285 KTNCQHCHKRLLNAVPCAQCNQVRYCSFACAKDSWNSYHRWEC-GNLNLLYSVGIAHLAV 343

Query: 181 KLILVSSHS-------------------DRYKEVYHLETHLQDMRPEDLYQY 213
           +++LV+  S                     Y  V+ L TH + M  EDL QY
Sbjct: 344 RVLLVTGLSGLADFCRHLAEGKVDVDKNGGYGSVHELVTHSEKMHVEDLLQY 395

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021392|gb|EGI61760.1| SET and MYND domain-containing protein 4 [Acromyrmex echinatior]

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 101/173 (58%), Gaps = 6/173 (3%)

Query: 47  MQVSSTSSSASSSVASLPSLACGESHTLMCASNKIKMQTSNAKGRHVIAVEDVHKGDTLF 106
           M+ ++ S++ ++   SLP +A GE+     AS  ++++ +  KGR+V+A  D+ +G  LF
Sbjct: 198 MEENADSTTDTAEFPSLPDVAFGENPNFRFASAAVEIKCTPKKGRYVVANRDIKRGQILF 257

Query: 107 VEKPVAFVILPPCSMSNCNHCC-TSISAPIPCNECILAVYCSESCRREAWLRYHRWECHG 165
           VEK  AFV L      NC +CC +S + P+PC EC+ ++YC+ +C  EA   YHRWEC G
Sbjct: 258 VEKAFAFVPLCHIKSDNCYNCCRSSGNTPVPCTECVDSIYCNITCWDEAHSSYHRWECLG 317

Query: 166 -ALRLLEAVGIAHLALKLILV----SSHSDRYKEVYHLETHLQDMRPEDLYQY 213
             + L   +GIA+LA++++       +  +R  EV  L T+   + P D+  Y
Sbjct: 318 NQMGLWAEIGIAYLAVRMLFKCTTDVTDDNRLDEVQKLVTNFSKLPPGDVISY 370

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345493155|ref|XP_001601354.2| PREDICTED: SET and MYND domain-containing protein 4-like [Nasonia vitripennis]

 Score =  119 bits (298), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 92/157 (58%), Gaps = 6/157 (3%)

Query: 63  LPSLACGESHTLMCASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILP-PCSM 121
           LP  A GE+     AS  + ++ S  KGRHV+A  DV KG+ LFVEKP AFV+L    S 
Sbjct: 198 LPDPAFGENPDFPNASAALDLKFSVDKGRHVVANRDVQKGEVLFVEKPFAFVLLDNEYSD 257

Query: 122 SNCNHCCT-SISAPIPCNECILAVYCSESCRREAWLRYHRWECHG-ALRLLEAVGIAHLA 179
           + C +C       P+PC  C   VYC+E CR++AW  YH+WEC G  + + + +GIAHL 
Sbjct: 258 AVCANCLKFRGDVPVPCKFCASTVYCTEQCRKKAWSTYHQWECFGNQIGIWDQIGIAHLT 317

Query: 180 LKLILVSSHSD---RYKEVYHLETHLQDMRPEDLYQY 213
           ++  L   ++D   ++ E+  L T++  +  +D++ Y
Sbjct: 318 VRTFLNCCYTDDTKKFNEIQRLVTNIDKIATQDMFVY 354

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391335768|ref|XP_003742261.1| PREDICTED: SET and MYND domain-containing protein 4-like [Metaseiulus occidentalis]

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 82/150 (54%), Gaps = 14/150 (9%)

Query: 77  ASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIP 136
           AS+ +    S  KGR ++A  DV  GD LFVE P A V+LP  + ++C+HC   I A  P
Sbjct: 244 ASSALDCLYSTEKGRFIVANRDVRPGDNLFVESPYASVLLPAFTKTHCHHCYRRIKAAFP 303

Query: 137 CNECILAVYCSESCRREAWLRYHRWECHGALRLLEAVGIAHLALKLILVSSHSD------ 190
           C +C    YCS SC  E+W  YH  EC G L LL +VGIAHLA ++ILV+          
Sbjct: 304 CRQCAQVRYCSMSCSGESWNLYHSQEC-GNLDLLISVGIAHLAERVILVTGLGLIKDFMK 362

Query: 191 -------RYKEVYHLETHLQDMRPEDLYQY 213
                   Y  VY L TH +DM   DL+QY
Sbjct: 363 SCNTLECSYLPVYQLVTHEEDMHIADLFQY 392

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170062|gb|EFN62504.1| SET and MYND domain-containing protein 4 [Camponotus floridanus]

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 98/165 (59%), Gaps = 6/165 (3%)

Query: 55  SASSSVASLPSLACGESHTLMCASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFV 114
           + S S   L  L  GE+     AS  I+++ +  KGR+V+A  ++ KG+TLFVE    FV
Sbjct: 28  TESPSQPKLKRLKSGENPNFRSASASIEVKHAPGKGRYVVANRNIKKGETLFVEDAFTFV 87

Query: 115 ILPPC-SMSNCNHCCTS-ISAPIPCNECILAVYCSESCRREAWLRYHRWECHGA-LRLLE 171
           ++      ++C++CC S +  P+PC EC+  ++C+  C  EA L YHRW C  + + LL 
Sbjct: 88  LVNNNKDNTHCHNCCKSYLDVPVPCTECVDTLFCNMKCWDEACLSYHRWLCLASQMGLLR 147

Query: 172 AVGIAHLALKLILV---SSHSDRYKEVYHLETHLQDMRPEDLYQY 213
            +GI HLALKL+ V   +++++++ +V  L T+   + PED + Y
Sbjct: 148 QIGITHLALKLLCVCATTTNNEKFNDVQQLVTNFNKLTPEDAFSY 192

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328698846|ref|XP_001948827.2| PREDICTED: SET and MYND domain-containing protein 4-like [Acyrthosiphon pisum]

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 85/143 (59%), Gaps = 2/143 (1%)

Query: 73  TLMCASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSIS 132
           TL   S K+++  S AKGR+ +A   +  G+ L  E P AFV+LP    S C +CC  + 
Sbjct: 240 TLPFRSPKMELCYSEAKGRYFVASTKIEYGELLIFENPFAFVLLPEYYNSFCYNCCVPLK 299

Query: 133 A-PIPCNECILAVYCSESCRREAWLRYHRWECHGALRLLEAVGIAHLALKLILVSSHSD- 190
              IPC+ C   ++C + C +EA   YHRWEC     + + +GIAHLAL+L + +S ++ 
Sbjct: 300 YYSIPCDNCCTILFCGDKCLQEARNSYHRWECKQGTSIFKCIGIAHLALRLTIETSQANS 359

Query: 191 RYKEVYHLETHLQDMRPEDLYQY 213
              ++Y+L TH+ D++  +LYQY
Sbjct: 360 NNDQIYNLLTHIDDLKSLELYQY 382

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720588|ref|XP_003398716.1| PREDICTED: SET and MYND domain-containing protein 4-like [Bombus terrestris]

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 77/219 (35%), Positives = 111/219 (50%), Gaps = 11/219 (5%)

Query: 3   KQDVQETLSSSLKLCRLQDTSHLDFKEDVLTIEKSEENSVEAMSMQ--VSSTSSSASSSV 60
           +Q  +ETLS    +    D      K+   +IEK   N   A S Q  ++  S   +  +
Sbjct: 152 QQLAKETLSKIQTMIHDSDYIAPSMKD---SIEKKINNITVAESFQQNIAQNSVQDTDDL 208

Query: 61  ASLPSLACGESHT-LMCASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPC 119
             L S    E +T    AS  I    S   GRHVIA + + KGD LF+EKPV+FV+L   
Sbjct: 209 LKLKSHIMFEENTNFPNASVAIDRIYSQELGRHVIANKSIKKGDILFLEKPVSFVLLSHD 268

Query: 120 SMSNCNHC-CTSISAPIPCNECILAVYCSESCRREAWLRYHRWECHG-ALRLLEAVGIAH 177
           + + C HC C++   P+PC  C+   YC+E C  +AW  YH WEC G  + L + +GI H
Sbjct: 269 TYNLCPHCNCSNTDIPVPCTTCLNTFYCNEYCLNKAWSLYHCWECPGNQMELWKEIGIGH 328

Query: 178 LALKLILVSS---HSDRYKEVYHLETHLQDMRPEDLYQY 213
           LALK++L  S      ++ E+ +L T+   +   DL  Y
Sbjct: 329 LALKVLLTCSTMTDETKFNEIQNLVTNFDKLSMGDLTVY 367

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291242073|ref|XP_002740933.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]

 Score =  109 bits (273), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 98/199 (49%), Gaps = 32/199 (16%)

Query: 47  MQVSSTSSSASSSVASLPSLACGESHTLMCASNKIKMQTSNAKGRHVIAVEDVHKGDTLF 106
           M  S+ S      +   P L+ G +  + C S+ + +++S  KGR+ +A  DV  GD L 
Sbjct: 210 MMESTESVGLQKKLKIPPKLSYGSNLHVPCMSSAVTIESSPDKGRYAVATRDVKVGDVLI 269

Query: 107 VEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECHGA 166
           VE P + V L PC++S+C+HC   + A IPC +C   VYCS+ CR  +W  YH  ECH  
Sbjct: 270 VENPYSSVGLQPCNVSHCHHCYIRVLASIPCLQCAGIVYCSKECRNASWEMYHNLECH-H 328

Query: 167 LRLLE--AVGIAHLALKLILVSS-----------------------------HSDRYKEV 195
           L L++   +G+ HLAL+ I+ +                              +   Y  V
Sbjct: 329 LDLIQELGLGMGHLALRTIIRTGLAFLLKFREQSANVNIPDESFHGCTVDGEYESNYYSV 388

Query: 196 YHLETHLQDMRPEDLYQYV 214
           Y+L  H +D +P DL++ V
Sbjct: 389 YNLVGHSEDRKPGDLFKRV 407

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|350401158|ref|XP_003486068.1| PREDICTED: SET and MYND domain-containing protein 4-like [Bombus impatiens]

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/129 (42%), Positives = 82/129 (63%), Gaps = 5/129 (3%)

Query: 90  GRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHC-CTSISAPIPCNECILAVYCSE 148
           GRHVIA + + KGD LF+EKPV+FV+L   + + C HC C +   P+PC  C+   YC+E
Sbjct: 159 GRHVIANKSIKKGDILFLEKPVSFVVLSHDTYNRCPHCNCQNADIPVPCTTCLNTFYCNE 218

Query: 149 SCRREAWLRYHRWECHG-ALRLLEAVGIAHLALKLILV-SSHSD--RYKEVYHLETHLQD 204
            C  +AW  YH WEC G  ++L E +GI HLALK++L  S+ +D  ++ E+ +L T+   
Sbjct: 219 YCSTKAWSLYHCWECPGNQMKLWEEIGIGHLALKVLLTCSTMTDEIKFNEIQNLVTNFDK 278

Query: 205 MRPEDLYQY 213
           +  ++L  Y
Sbjct: 279 LSMDELTVY 287

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449672885|ref|XP_002160254.2| PREDICTED: SET and MYND domain-containing protein 4-like [Hydra magnipapillata]

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 107/233 (45%), Gaps = 43/233 (18%)

Query: 23  SHLDFKE--DVLTIEKSEE-NSVEAMSMQVSSTS---SSASSSVASLPSL--ACGESHTL 74
           S L FK+   VL  E SEE N VE +   V       + A + V  L S     G    L
Sbjct: 157 SQLSFKKCLTVLPTEFSEEKNQVEMLLSSVCKFDLAHTVAVNEVVELDSFIPVNGFDKIL 216

Query: 75  MCASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAP 134
              S+ I++   + +GR++ A ED+  G  +  EKP A V+LP    ++C  C   + + 
Sbjct: 217 TRGSSSIEVGYDSKQGRYIFAKEDIPNGSIIISEKPYAAVLLPHWYKTHCQLCFDKVVSL 276

Query: 135 IPCNECILAVYCSESCRREAWLRYHRWECHGALRLLEAVGIAHLALKLILVSSHSD---- 190
            PC EC   V+CS SC  +AW  YHR+EC   L L+E VGIAHL+L+++LVS   D    
Sbjct: 277 FPCYECAEVVFCSLSCYNDAWATYHRFECK-KLSLMEKVGIAHLSLRIVLVSDAKDLLRF 335

Query: 191 ------------------------------RYKEVYHLETHLQDMRPEDLYQY 213
                                          Y+ VY L TH   +  EDL+QY
Sbjct: 336 LGSDLNKFTDSPTLPSSKIEGCNDQGIYQGDYESVYFLSTHSDRLPIEDLFQY 388

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
FB|FBgn0036282	663	Smyd4 "SET and MYND domain pro	0.654	0.211	0.302	3.1e-14
FB|FBgn0033633	660	CG7759 [Drosophila melanogaste	0.588	0.190	0.308	2.9e-13
FB|FBgn0033427	751	CG1868 [Drosophila melanogaste	0.490	0.139	0.396	4.5e-13
ZFIN|ZDB-GENE-060929-248	753	smyd4 "SET and MYND domain con	0.579	0.164	0.269	7.4e-13
UNIPROTKB|E1BEP0	805	SMYD4 "Uncharacterized protein	0.313	0.083	0.420	7.5e-11
UNIPROTKB|F1P1D6	743	SMYD4 "SET and MYND domain-con	0.308	0.088	0.441	7.6e-11
UNIPROTKB|F1NEF3	747	SMYD4 "SET and MYND domain-con	0.308	0.088	0.441	7.7e-11
UNIPROTKB|E1C7E7	797	SMYD4 "SET and MYND domain-con	0.308	0.082	0.441	9.1e-11
UNIPROTKB|Q5F3V0	742	SMYD4 "SET and MYND domain-con	0.308	0.088	0.441	1.2e-10
TAIR|locus:2007013	798	TPR9 "tetratricopeptide repeat	0.336	0.090	0.328	6.5e-10

FB|FBgn0036282 Smyd4 "SET and MYND domain protein 4" [Drosophila melanogaster (taxid:7227)]

 Score = 193 (73.0 bits), Expect = 3.1e-14, P = 3.1e-14
 Identities = 45/149 (30%), Positives = 75/149 (50%)

Query:    69 GESHTLMCASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCC 128
             GES  L+ AS  +++  +  KGR V+A E +  GD L  E+PVA  + P    ++C+HC 
Sbjct:   244 GESAELVGASKVVRLVETKDKGRFVVANEGLRTGDVLLFEEPVAACLEPSYFGTHCHHCF 303

Query:   129 TSISAPIPCNECILAVYCSESCRREAWLRYHRWECHGALRLLEAVGIAHLALKLILVSSH 188
               +  P+ C  C    +CS  C  EA   YHR+EC   + L+   G++ L    + + + 
Sbjct:   304 KRLHTPVSCLHCSGIAFCSAQCMGEACSSYHRFECE-YMDLMIGSGMSILCFIALRIFTQ 362

Query:   189 SDRYKE--------VYHLETHLQDMRPED 209
             +   ++          HL +H +D +P+D
Sbjct:   363 APSLEQGLATANLLFEHLCSHEEDRQPDD 391

GO:0007562 "eclosion" evidence=IMP

GO:0042826 "histone deacetylase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010629 "negative regulation of gene expression" evidence=IDA

FB|FBgn0033633 CG7759 [Drosophila melanogaster (taxid:7227)]

 Score = 184 (69.8 bits), Expect = 2.9e-13, P = 2.9e-13
 Identities = 41/133 (30%), Positives = 72/133 (54%)

Query:    81 IKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNEC 140
             +++ ++  +GR   A  DV  G+ L VE+P   V+L   + ++C +C      P+ C  C
Sbjct:   241 VRIDSNRQEGRFARASADVKPGEELLVERPFVSVLLEKFAKTHCENCFMRTVVPVACPRC 300

Query:   141 ILAVYCSESCRREAWLRYHRWECHGALRLLEAVGIA---HLALKLILVSSHSDRYKEVYH 197
                +YCSE CR EA  +YH++EC G + ++   G +   H+AL++I  S   D + ++  
Sbjct:   301 ADVLYCSEQCREEASKKYHKYEC-GIVPIIWRSGASINNHIALRII-ASKPLDYFLKLK- 357

Query:   198 LETHLQDMRPEDL 210
               T  +++ PE L
Sbjct:   358 -PTIDEELTPEQL 369

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010629 "negative regulation of gene expression" evidence=ISS

GO:0042826 "histone deacetylase binding" evidence=ISS

FB|FBgn0033427 CG1868 [Drosophila melanogaster (taxid:7227)]

 Score = 183 (69.5 bits), Expect = 4.5e-13, P = 4.5e-13
 Identities = 48/121 (39%), Positives = 69/121 (57%)

Query:    89 KGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCC-TSISAPIPCNECIL-AVYC 146
             +GR+++A E + KG+ +F E+   FV L    +  C  C  T +SAPIPC  C    VYC
Sbjct:   225 RGRYMVAKEAISKGNVIFSERASCFVPLEQLLI--CQQCAATLMSAPIPCPNCHQRVVYC 282

Query:   147 SESCRREAWLRYHRWECHGALR--LLEAVGIAHLALKLILVSSHSDRYKEVYHLETHLQD 204
             S  CR EA    H++EC  A R  +L  +GI+HLAL+L+L       Y  + ++  HLQ+
Sbjct:   283 SRKCR-EAHSAIHKFEC-AAYRKDILRLLGISHLALRLLLT------Y--IPYIRPHLQE 332

Query:   205 M 205
             M
Sbjct:   333 M 333

GO:0008270 "zinc ion binding" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010629 "negative regulation of gene expression" evidence=ISS

ZFIN|ZDB-GENE-060929-248 smyd4 "SET and MYND domain containing 4" [Danio rerio (taxid:7955)]

 Score = 181 (68.8 bits), Expect = 7.4e-13, P = 7.4e-13
 Identities = 38/141 (26%), Positives = 77/141 (54%)

Query:    78 SNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMS--------------- 122
             S+ + +  S+ KGRH++ +E+   G+ +  ++    V++P    +               
Sbjct:   185 SDGVSVYFSSDKGRHMLVMENKPAGEVVLEDEAYCSVLIPANIFNTGTNKAVETFGTEDR 244

Query:   123 NCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECHGALRLLEAVGI-AHLALK 181
             +C+HC +   + +PC +C  A YC ESC+++AW ++H+WEC     LL A+G+  HLAL+
Sbjct:   245 HCHHCLSQSLSFVPCPKCSYARYCGESCQKDAWDQWHQWECPVGADLL-AIGVLGHLALR 303

Query:   182 LILVSSHSDRYKEVYHLETHL 202
             ++L +  ++    + + + H+
Sbjct:   304 VVLKAGQTEVQMGIKNTKDHV 324

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BEP0 SMYD4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 148 (57.2 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
 Identities = 29/69 (42%), Positives = 40/69 (57%)

Query:   123 NCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECH-GALRLLEAVGIAHLALK 181
             +C+ C     AP+PC+ C  A YCS+ C ++AW RYH  EC  GAL L   V   H+AL+
Sbjct:   295 HCHRCLRHTLAPVPCDGCSYAKYCSQECMQQAWDRYHSVECSLGALLLTLGV-FCHVALR 353

Query:   182 LILVSSHSD 190
               L++   D
Sbjct:   354 STLLARFED 362

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1P1D6 SMYD4 "SET and MYND domain-containing protein 4" [Gallus gallus (taxid:9031)]

 Score = 151 (58.2 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
 Identities = 30/68 (44%), Positives = 41/68 (60%)

Query:   124 CNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECH-GALRLLEAVGIAHLALKL 182
             C+HC   + A IPC  C  A YCS++C   AW +YHR EC  GAL L   V   H+AL+ 
Sbjct:   295 CHHCLKQLLASIPCCGCSYAKYCSQNCADVAWEQYHRTECPLGALLLTLGV-FCHVALRT 353

Query:   183 ILVSSHSD 190
             +L++  S+
Sbjct:   354 VLLAGFSE 361

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NEF3 SMYD4 "SET and MYND domain-containing protein 4" [Gallus gallus (taxid:9031)]

 Score = 151 (58.2 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
 Identities = 30/68 (44%), Positives = 41/68 (60%)

Query:   124 CNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECH-GALRLLEAVGIAHLALKL 182
             C+HC   + A IPC  C  A YCS++C   AW +YHR EC  GAL L   V   H+AL+ 
Sbjct:   295 CHHCLKQLLASIPCCGCSYAKYCSQNCADVAWEQYHRTECPLGALLLTLGV-FCHVALRT 353

Query:   183 ILVSSHSD 190
             +L++  S+
Sbjct:   354 VLLAGFSE 361

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1C7E7 SMYD4 "SET and MYND domain-containing protein 4" [Gallus gallus (taxid:9031)]

 Score = 151 (58.2 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
 Identities = 30/68 (44%), Positives = 41/68 (60%)

Query:   124 CNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECH-GALRLLEAVGIAHLALKL 182
             C+HC   + A IPC  C  A YCS++C   AW +YHR EC  GAL L   V   H+AL+ 
Sbjct:   295 CHHCLKQLLASIPCCGCSYAKYCSQNCADVAWEQYHRTECPLGALLLTLGV-FCHVALRT 353

Query:   183 ILVSSHSD 190
             +L++  S+
Sbjct:   354 VLLAGFSE 361

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5F3V0 SMYD4 "SET and MYND domain-containing protein 4" [Gallus gallus (taxid:9031)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
 Identities = 30/68 (44%), Positives = 41/68 (60%)

Query:   124 CNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECH-GALRLLEAVGIAHLALKL 182
             C+HC   + A IPC  C  A YCS++C   AW +YHR EC  GAL L   V   H+AL+ 
Sbjct:   295 CHHCLKQLLASIPCCGCSYAKYCSQNCADVAWEQYHRTECPLGALLLTLGV-FFHVALRT 353

Query:   183 ILVSSHSD 190
             +L++  S+
Sbjct:   354 VLLAGFSE 361

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2007013 TPR9 "tetratricopeptide repeat 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
 Identities = 24/73 (32%), Positives = 43/73 (58%)

Query:    80 KIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAP-IPCN 138
             K++  ++  KGR +++  D+ +   + VE+P + VI   C  ++C+ C   + A  +PC 
Sbjct:   219 KLRCVSTKEKGRGMVSECDIEEASVIHVEEPFSVVISKSCRETHCHFCLNELPADTVPCP 278

Query:   139 ECILAVYCSESCR 151
              C + VYCSESC+
Sbjct:   279 SCSIPVYCSESCQ 291

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	214
pfam01753	39	pfam01753, zf-MYND, MYND finger	3e-05
PRK00002	358	PRK00002, aroB, 3-dehydroquinate synthase; Reviewe	0.004

>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger

 Score = 39.7 bits (93), Expect = 3e-05
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 124 CNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWEC 163
           C  C       + C+ C    YCS+ C++  W  YH+ EC
Sbjct: 1   CAVCGKEALKLLRCSRCKSVYYCSKECQKADW-PYHKKEC 39

Length = 39

>gnl|CDD|234565 PRK00002, aroB, 3-dehydroquinate synthase; Reviewed

 Score = 37.0 bits (87), Expect = 0.004
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 15/70 (21%)

Query: 153 EAWLRYHRWECHGALRLLEAVGI-----AHLALKLILVS-SHSDRYKEV---YHLETHLQ 203
           EA   Y +W  HG     EAV I     A L+ +L L+S + ++R + +     L T L 
Sbjct: 251 EAETGYGKWL-HG-----EAVAIGMVMAARLSERLGLLSEADAERIRALLERAGLPTSLP 304

Query: 204 DMRPEDLYQY 213
           D+  E L + 
Sbjct: 305 DLDAEALLEA 314

Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
PF01753	37	zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin	98.88
KOG2084|consensus	482		97.64
KOG1710|consensus	396		97.36
PF00856	162	SET: SET domain; InterPro: IPR001214 The SET domai	97.23
smart00317	116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	96.68
PF13824	55	zf-Mss51: Zinc-finger of mitochondrial splicing su	93.91
PLN03158	396	methionine aminopeptidase; Provisional	92.95
PF04438	30	zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc	92.87
KOG3612|consensus	588		92.5
KOG1085|consensus	392		86.38
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	83.61
PF12855	43	Ecl1: Life-span regulatory factor; InterPro: IPR02	83.42
KOG2857|consensus	157		82.57

>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.88  E-value=6.2e-10  Score=69.47  Aligned_cols=37  Identities=43%  Similarity=1.139  Sum_probs=32.2

Q ss_pred             cccCCCCCCCcccCCCCCceeecChHHHhHhhhcchHHhh
Q psy10008        124 CNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWEC  163 (214)
Q Consensus       124 C~~C~~~~~~~~~C~~C~~~~YCS~~C~~~aw~~~H~~EC  163 (214)
                      |.+|++.  ...+|++|+.++|||++||+.+| ..|+.+|
T Consensus         1 C~~C~~~--~~~~C~~C~~~~YCs~~Cq~~~w-~~Hk~~C   37 (37)
T PF01753_consen    1 CAVCGKP--ALKRCSRCKSVYYCSEECQRADW-PYHKFEC   37 (37)
T ss_dssp             -TTTSSC--SSEEETTTSSSEESSHHHHHHHH-HHHCCTH
T ss_pred             CcCCCCC--cCCcCCCCCCEEecCHHHHHHHH-HHHhhhC
Confidence            7888884  34499999999999999999999 9999887

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....

>KOG2084|consensus

Probab=97.64  E-value=4e-05  Score=70.50  Aligned_cols=70  Identities=21%  Similarity=0.652  Sum_probs=54.1

Q ss_pred             CCCccEEEEccCCCCCCEEEEeccceeeecCCCCCCccccCCCCCCCcccCCCCCceeecChHHHhHhhhcchHHhh
Q psy10008         87 NAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWEC  163 (214)
Q Consensus        87 ~~~GRgl~Atrdi~~GevIl~e~P~~~v~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~YCS~~C~~~aw~~~H~~EC  163 (214)
                      +..|||++|+++|++|++|+.|.|++..+..    ..|..|+..  ....|.+|....+|+. |+..+|...|+++|
T Consensus        22 ~~~Gr~~~a~~~i~~g~~i~~e~p~~~~p~~----~~~~~c~~~--~~~~C~~~~~~~~~~~-~~~~~~~~~~~~~~   91 (482)
T KOG2084|consen   22 PELGRGLVATQAIEAGEVILEEEPLVVGPAS----KSCSRCLGC--SCDHCRRCLEAIECNK-CQQRGWALCGKFAC   91 (482)
T ss_pred             cccCcceeeecccCCCceEEecCcceeeecc----cCCcccccc--chhhhhcCCccHhhhh-hhccCccccchhhc
Confidence            6899999999999999999999999977765    455555543  4556888888899986 55544446666666

>KOG1710|consensus

Probab=97.36  E-value=5.8e-05  Score=67.27  Aligned_cols=44  Identities=27%  Similarity=0.717  Sum_probs=37.8

Q ss_pred             CCccccCCCCCCCcccCCCCCceeecChHHHhHhhhcchHHhhHHHH
Q psy10008        121 MSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECHGAL  167 (214)
Q Consensus       121 ~~~C~~C~~~~~~~~~C~~C~~~~YCS~~C~~~aw~~~H~~EC~~~l  167 (214)
                      ..+|+.|+.+. ...+|+.|+.+.||+.+||+-+| ..|+.-| .++
T Consensus       319 ~~fCstCG~~g-a~KrCs~CKav~YCdqeCQk~hW-f~HKK~C-~~L  362 (396)
T KOG1710|consen  319 CQFCSTCGHPG-AKKRCSQCKAVAYCDQECQKFHW-FIHKKVC-SFL  362 (396)
T ss_pred             cccccccCCCC-ccchhhhhHHHHHHHHHHHHhhh-HHHHHHH-HHH
Confidence            46788888764 45789999999999999999999 9999999 554

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Probab=97.23  E-value=0.00021  Score=55.11  Aligned_cols=24  Identities=25%  Similarity=0.719  Sum_probs=18.8

Q ss_pred             ccEEEEccCCCCCCEEEEecccee
Q psy10008         90 GRHVIAVEDVHKGDTLFVEKPVAF  113 (214)
Q Consensus        90 GRgl~Atrdi~~GevIl~e~P~~~  113 (214)
                      ||||||++||++||+|++..|++.
T Consensus         1 GrGl~At~dI~~Ge~I~~p~~~~~   24 (162)
T PF00856_consen    1 GRGLFATRDIKAGEVILIPRPAIL   24 (162)
T ss_dssp             SEEEEESS-B-TTEEEEEESEEEE
T ss_pred             CEEEEECccCCCCCEEEEECcceE
Confidence            999999999999999996666653

The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Probab=96.68  E-value=0.0026  Score=46.94  Aligned_cols=34  Identities=26%  Similarity=0.234  Sum_probs=29.5

Q ss_pred             EEEEEcCCCccEEEEccCCCCCCEEEEeccceee
Q psy10008         81 IKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFV  114 (214)
Q Consensus        81 vei~~s~~~GRgl~Atrdi~~GevIl~e~P~~~v  114 (214)
                      +++..++.+|+||+|+++|++|++|+...+.+..
T Consensus         2 ~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~   35 (116)
T smart00317        2 LEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIIT   35 (116)
T ss_pred             cEEEecCCCcEEEEECCccCCCCEEEEEEeEEEC
Confidence            5677778999999999999999999988887644

Putative methyl transferase, based on outlier plant homologues

>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51

Probab=93.91  E-value=0.099  Score=35.49  Aligned_cols=45  Identities=27%  Similarity=0.629  Sum_probs=35.3

Q ss_pred             cccCCCCC--CCcccCCCCCceeecChHHHhHhhhcchHHhhHHHHHhh
Q psy10008        124 CNHCCTSI--SAPIPCNECILAVYCSESCRREAWLRYHRWECHGALRLL  170 (214)
Q Consensus       124 C~~C~~~~--~~~~~C~~C~~~~YCS~~C~~~aw~~~H~~EC~~~l~~l  170 (214)
                      |..|....  ...+.|+.|+...|||++=...+. ..|+.-| ..|+..
T Consensus         2 Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~~D~-e~H~~~c-~~LRqv   48 (55)
T PF13824_consen    2 CPVCKKDLPAHVNFECPDCGIPTHCSEEHWEDDY-EEHRQLC-ERLRQV   48 (55)
T ss_pred             CCCCccccccccCCcCCCCCCcCccCHHHHHHhH-HHHHHHH-HHHHHh
Confidence            66666644  246889999999999998888875 7898899 777654

>PLN03158 methionine aminopeptidase; Provisional

Probab=92.95  E-value=0.075  Score=49.48  Aligned_cols=37  Identities=30%  Similarity=0.883  Sum_probs=29.3

Q ss_pred             CCccccCCCCCCCcccCCCCC-------ceeecChHHHhHhhhcchH
Q psy10008        121 MSNCNHCCTSISAPIPCNECI-------LAVYCSESCRREAWLRYHR  160 (214)
Q Consensus       121 ~~~C~~C~~~~~~~~~C~~C~-------~~~YCS~~C~~~aw~~~H~  160 (214)
                      ...|..|.+..  ...|+.|.       ..+|||.+|-+.+| ..|+
T Consensus         9 ~~~c~~c~~~a--~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w-~~Hk   52 (396)
T PLN03158          9 PLACARCSKPA--HLQCPKCLELKLPREGASFCSQDCFKAAW-SSHK   52 (396)
T ss_pred             cccccCCCCcc--cccCccchhcCCCCCCceeECHHHHHHHH-HHHH
Confidence            45688999864  48899885       37999999999999 5553

>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.87  E-value=0.074  Score=31.61  Aligned_cols=28  Identities=36%  Similarity=0.819  Sum_probs=20.5

Q ss_pred             CccccCCCCCCCcccCCCCCceeecChHHHh
Q psy10008        122 SNCNHCCTSISAPIPCNECILAVYCSESCRR  152 (214)
Q Consensus       122 ~~C~~C~~~~~~~~~C~~C~~~~YCS~~C~~  152 (214)
                      ..|.-|..  ...+.|++| ...|||.+|.+
T Consensus         3 ~~C~vC~~--~~kY~Cp~C-~~~~CSl~C~k   30 (30)
T PF04438_consen    3 KLCSVCGN--PAKYRCPRC-GARYCSLACYK   30 (30)
T ss_dssp             EEETSSSS--EESEE-TTT---EESSHHHHH
T ss_pred             CCCccCcC--CCEEECCCc-CCceeCcEeEC
Confidence            46778887  678899999 88999999964

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.

>KOG3612|consensus

Probab=92.50  E-value=0.03  Score=53.64  Aligned_cols=38  Identities=34%  Similarity=0.830  Sum_probs=31.9

Q ss_pred             CCccccCCCCCCCcccCCCCCceeecChHHHhHhhhcchHHhh
Q psy10008        121 MSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWEC  163 (214)
Q Consensus       121 ~~~C~~C~~~~~~~~~C~~C~~~~YCS~~C~~~aw~~~H~~EC  163 (214)
                      ..-|.+|...  +.+-|  |-...|||.+||+.+| ..|+.-|
T Consensus       527 KQWC~nC~~E--Aiy~C--CWNTSYCsveCQQ~HW-~~H~ksC  564 (588)
T KOG3612|consen  527 KQWCYNCLDE--AIYHC--CWNTSYCSVECQQGHW-PEHRKSC  564 (588)
T ss_pred             HHHHHhhhHH--HHHHh--hccccccCcchhhccc-hhHhhhh
Confidence            5678888873  45666  7789999999999999 7999999

>KOG1085|consensus

Probab=86.38  E-value=0.83  Score=41.13  Aligned_cols=34  Identities=21%  Similarity=0.245  Sum_probs=28.6

Q ss_pred             cCCCcEEEEEcCCCccEEEEccCCCCCCEEEEec
Q psy10008         76 CASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEK  109 (214)
Q Consensus        76 ~~s~~vei~~s~~~GRgl~Atrdi~~GevIl~e~  109 (214)
                      .-..++.+.+..++||||+|+++|+.||-|..-.
T Consensus       253 g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~  286 (392)
T KOG1085|consen  253 GTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYR  286 (392)
T ss_pred             ccccceeEEeeccccceeEeecccccCceEEEEe
Confidence            3456778888889999999999999999987543

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=83.61  E-value=0.84  Score=31.40  Aligned_cols=27  Identities=30%  Similarity=0.656  Sum_probs=21.3

Q ss_pred             CCccccCCCCCCCcccCCCCCceeecChHHHhHhh
Q psy10008        121 MSNCNHCCTSISAPIPCNECILAVYCSESCRREAW  155 (214)
Q Consensus       121 ~~~C~~C~~~~~~~~~C~~C~~~~YCS~~C~~~aw  155 (214)
                      ..+|-+|+++.+.        .-.|||++|++..+
T Consensus         3 HkHC~~CG~~Ip~--------~~~fCS~~C~~~~~   29 (59)
T PF09889_consen    3 HKHCPVCGKPIPP--------DESFCSPKCREEYR   29 (59)
T ss_pred             CCcCCcCCCcCCc--------chhhhCHHHHHHHH
Confidence            4689999988754        46799999998865

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]

Probab=83.42  E-value=0.67  Score=29.86  Aligned_cols=32  Identities=28%  Similarity=0.474  Sum_probs=22.7

Q ss_pred             CCccccCCCCCCCcccCCCCCceeecChHHHhHhhhc
Q psy10008        121 MSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLR  157 (214)
Q Consensus       121 ~~~C~~C~~~~~~~~~C~~C~~~~YCS~~C~~~aw~~  157 (214)
                      ..+|-.|-+.+..     .-....|||++|+..++..
T Consensus         6 ~~yC~~Cdk~~~~-----~~~~~lYCSe~Cr~~D~~~   37 (43)
T PF12855_consen    6 NDYCIVCDKQIDP-----PDDGSLYCSEECRLKDQEK   37 (43)
T ss_pred             hhHHHHhhccccC-----CCCCccccCHHHHhHhhhc
Confidence            3567777776633     2237899999999998744

Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.

>KOG2857|consensus

Probab=82.57  E-value=0.57  Score=37.76  Aligned_cols=36  Identities=31%  Similarity=0.765  Sum_probs=27.5

Q ss_pred             CCccccCCCCCCCcccCCCCCceeecChHHHhHhhhcchHH--hh
Q psy10008        121 MSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRW--EC  163 (214)
Q Consensus       121 ~~~C~~C~~~~~~~~~C~~C~~~~YCS~~C~~~aw~~~H~~--EC  163 (214)
                      ..+|.-|.+.. ..++|+.| .+.|||-.|.+     .|+.  +|
T Consensus         5 t~tC~ic~e~~-~KYKCpkC-~vPYCSl~CfK-----iHk~tPq~   42 (157)
T KOG2857|consen    5 TTTCVICLESE-IKYKCPKC-SVPYCSLPCFK-----IHKSTPQC   42 (157)
T ss_pred             eeeehhhhcch-hhccCCCC-CCccccchhhh-----hccCCccc
Confidence            45788888753 35899999 89999999954     5554  67

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	214
3oxg_A	464	Human Lysine Methyltransferase Smyd3 In Complex Wit		1e-06
3oxf_A	436	Human Lysine Methyltransferase Smyd3 In Complex Wit		1e-06
3pdn_A	428	Crystal Structure Of Smyd3 In Complex With Methyltr		2e-06
3qwp_A	429	Crystal Structure Of Set And Mynd Domain Containing		2e-06
3n71_A	490	Crystal Structure Of Cardiac Specific Histone Methy		4e-06
3ru0_A	438	Cocrystal Structure Of Human Smyd3 With Inhibitor S		4e-06
3mek_A	429	Crystal Structure Of Human Histone-Lysine N- Methyl		5e-06
3rib_A	441	Human Lysine Methyltransferase Smyd2 In Complex Wit		3e-05
3s7b_A	433	Structural Basis Of Substrate Methylation And Inhib		3e-05
3tg4_A	433	Structure Of Smyd2 In Complex With Sam Length = 433		3e-05

>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form Iii) Length = 464

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 82  KMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECI 141
           K  T+N +G  + AV  +  G+ LF   P+A+ +        C+ C       + C++C 
Sbjct: 44  KFATAN-RGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCR 102
Query: 142 LAVYCSESCRREAWLRYHRWECH-----------GALRLLEAVGIAHLALKLI-LVSSHS 189
           +A YCS  C+++AW   H+ EC             ++RLL       +  KL+    S S
Sbjct: 103 VAKYCSAKCQKKAWPD-HKRECKCLKSCKPRYPPDSVRLL-----GRVVFKLMDGAPSES 156
Query: 190 DRYKEVYHLETHLQDM---RPEDLYQYV 214
           ++    Y LE+++  +   R E L Q V
Sbjct: 157 EKLYSFYDLESNINKLTEDRKEGLRQLV 184

>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form I) Length = 436

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 82  KMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECI 141
           K  T+N +G  + AV  +  G+ LF   P+A+ +        C+ C       + C++C 
Sbjct: 8   KFATAN-RGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCR 66
Query: 142 LAVYCSESCRREAWLRYHRWECH-----------GALRLLEAVGIAHLALKLI-LVSSHS 189
           +A YCS  C+++AW   H+ EC             ++RLL       +  KL+    S S
Sbjct: 67  VAKYCSAKCQKKAWPD-HKRECKCLKSCKPRYPPDSVRLL-----GRVVFKLMDGAPSES 120
Query: 190 DRYKEVYHLETHLQDM---RPEDLYQYV 214
           ++    Y LE+++  +   R E L Q V
Sbjct: 121 EKLYSFYDLESNINKLTEDRKEGLRQLV 148

>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With Methyltransferase Inhibitor Sinefungin Length = 428

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 82  KMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECI 141
           K  T+N +G  + AV  +  G+ LF   P+A+ +        C+ C       + C++C 
Sbjct: 8   KFATAN-RGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCR 66
Query: 142 LAVYCSESCRREAWLRYHRWECH-----------GALRLLEAVGIAHLALKLI-LVSSHS 189
           +A YCS  C+++AW   H+ EC             ++RLL       +  KL+    S S
Sbjct: 67  VAKYCSAKCQKKAWPD-HKRECKCLKSCKPRYPPDSVRLL-----GRVVFKLMDGAPSES 120
Query: 190 DRYKEVYHLETHLQDM---RPEDLYQYV 214
           ++    Y LE+++  +   R E L Q V
Sbjct: 121 EKLYSFYDLESNINKLTEDRKEGLRQLV 148

>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3; Zinc Finger Mynd Domain-Containing Protein 1 Length = 429

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 82  KMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECI 141
           K  T+N +G  + AV  +  G+ LF   P+A+ +        C+ C       + C++C 
Sbjct: 9   KFATAN-RGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCR 67
Query: 142 LAVYCSESCRREAWLRYHRWECH-----------GALRLLEAVGIAHLALKLI-LVSSHS 189
           +A YCS  C+++AW   H+ EC             ++RLL       +  KL+    S S
Sbjct: 68  VAKYCSAKCQKKAWPD-HKRECKCLKSCKPRYPPDSVRLL-----GRVVFKLMDGAPSES 121
Query: 190 DRYKEVYHLETHLQDM---RPEDLYQYV 214
           ++    Y LE+++  +   R E L Q V
Sbjct: 122 EKLYSFYDLESNINKLTEDRKEGLRQLV 149

>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone Methyltransferase Smyd1 Length = 490

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 81  IKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNEC 140
           +++ TS  KGR + A ++    D +F E+  + V+        C+ C         C +C
Sbjct: 9   VEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQC 68
Query: 141 ILAVYCSESCRREAWLRYHRWEC 163
             A YC  +C+++AWL  H+ EC
Sbjct: 69  KFAHYCDRTCQKDAWLN-HKNEC 90

>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor Sinefungin Bound Length = 438

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 82  KMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECI 141
           K  T+N +G  + AV  +  G+ LF   P+A+ +        C+ C       + C++C 
Sbjct: 10  KFATAN-RGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCR 68
Query: 142 LAVYCSESCRREAWLRYHRWECH-----------GALRLLEAVGIAHLALKLI-LVSSHS 189
           +A YCS  C+++AW   H+ EC             ++RLL       +  KL+    S S
Sbjct: 69  VAKYCSAKCQKKAWPD-HKRECKCLKSCKPRYPPDSVRLL-----GRVVFKLMDGAPSES 122
Query: 190 DRYKEVYHLETHLQDM---RPEDLYQYV 214
           ++    Y LE+++  +   + E L Q V
Sbjct: 123 EKLYSFYDLESNINKLTEDKKEGLRQLV 150

>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N- Methyltransferase Smyd3 In Complex With S-Adenosyl-L- Methionine Length = 429

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 22/148 (14%)
Query: 82  KMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECI 141
           K  T+N +G  + AV  +  G+ LF   P+A+ +        C+ C         C++C 
Sbjct: 9   KFATAN-RGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLXRCSQCR 67
Query: 142 LAVYCSESCRREAWLRYHRWECH-----------GALRLLEAVGIAHLALKLI-LVSSHS 189
           +A YCS  C+++AW   H+ EC             ++RLL       +  KL     S S
Sbjct: 68  VAKYCSAKCQKKAWPD-HKRECKCLKSCKPRYPPDSVRLL-----GRVVFKLXDGAPSES 121
Query: 190 DRYKEVYHLETHLQDM---RPEDLYQYV 214
           ++    Y LE+++  +   R E L Q V
Sbjct: 122 EKLYSFYDLESNINKLTEDRKEGLRQLV 149

>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With Adohcy Length = 441

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 86  SNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVY 145
           S  KGR + A++    GD LF     A+V+      ++C +C T       C  C  A Y
Sbjct: 14  SPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFY 73
Query: 146 CSESCRREAWLRYHRWEC 163
           C+  C++E W   H+ EC
Sbjct: 74  CNVECQKEDW-PMHKLEC 90

>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition Of Smyd2 Length = 433

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 86  SNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVY 145
           S  KGR + A++    GD LF     A+V+      ++C +C T       C  C  A Y
Sbjct: 14  SPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFY 73
Query: 146 CSESCRREAWLRYHRWEC 163
           C+  C++E W   H+ EC
Sbjct: 74  CNVECQKEDW-PMHKLEC 90

>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam Length = 433

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 86  SNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVY 145
           S  KGR + A++    GD LF     A+V+      ++C +C T       C  C  A Y
Sbjct: 14  SPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFY 73
Query: 146 CSESCRREAWLRYHRWEC 163
           C+  C++E W   H+ EC
Sbjct: 74  CNVECQKEDW-PMHKLEC 90

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	214
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	2e-21
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	2e-19
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	2e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 90.4 bits (223), Expect = 2e-21
 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 8/144 (5%)

Query: 77  ASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIP 136
           +   +++ TS  KGR + A ++    D +F E+  + V+        C+ C         
Sbjct: 5   SMENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHR 64

Query: 137 CNECILAVYCSESCRREAWLRYHRWECHGALRLLEAVGIAHLALKLILVS-------SHS 189
           C +C  A YC  +C+++AWL  H+ EC    +  +           I+            
Sbjct: 65  CGQCKFAHYCDRTCQKDAWL-NHKNECAAIKKYGKVPNENIRLAARIMWRVEREGTGLTE 123

Query: 190 DRYKEVYHLETHLQDMRPEDLYQY 213
                V  L+ H++    E+  + 
Sbjct: 124 GCLVSVDDLQNHVEHFGEEEQKEL 147

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 84.5 bits (208), Expect = 2e-19
 Identities = 35/146 (23%), Positives = 51/146 (34%), Gaps = 10/146 (6%)

Query: 77  ASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIP 136
           A   ++   S  KGR + A+   H GD LF     A V+       +C  C         
Sbjct: 5   ARGGLERFCSAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLSK 64

Query: 137 CNECILAVYCSESCRREAWLRYHRWECHGALRLLE---------AVGIAHLALKLILVSS 187
           C  C  A YC   C++E W   H+ EC   + L E                  K+    +
Sbjct: 65  CGRCKQAFYCDVECQKEDW-PLHKLECSSMVVLGENWNPSETVRLTARILAKQKIHPERT 123

Query: 188 HSDRYKEVYHLETHLQDMRPEDLYQY 213
            S++   V   E+HL  +  E     
Sbjct: 124 PSEKLLAVREFESHLDKLDNEKKDLI 149

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 76.1 bits (186), Expect = 2e-16
 Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 6/140 (4%)

Query: 80  KIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNE 139
           K++   +  +G  + AV  +  G+ LF   P+A+ +        C+ C       + C++
Sbjct: 6   KVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQ 65

Query: 140 CILAVYCSESCRREAWLRYHRWEC------HGALRLLEAVGIAHLALKLILVSSHSDRYK 193
           C +A YCS  C+++AW  + R                  +    +   +    S S++  
Sbjct: 66  CRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLY 125

Query: 194 EVYHLETHLQDMRPEDLYQY 213
             Y LE+++  +  +     
Sbjct: 126 SFYDLESNINKLTEDRKEGL 145

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 30/249 (12%), Positives = 68/249 (27%), Gaps = 66/249 (26%)

Query: 5   DVQETLSSSLKL----CRL----QDTSHLDF----KEDVLTIEKSEENSVEAMSMQVSST 52
           +VQ   + +       C++    +     DF        ++++             +   
Sbjct: 252 NVQN--AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL- 308

Query: 53  SSSASSSVASLPSLACGES--HTLMCASNKIKM--------QTSNAKGRHVI--AVEDVH 100
                     LP      +     + A +              +  K   +I  ++  + 
Sbjct: 309 -KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 101 KGDT--LFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRY 158
             +   +F        + PP             SA IP    +L++   +  + +  +  
Sbjct: 368 PAEYRKMFDR----LSVFPP-------------SAHIP--TILLSLIWFDVIKSDVMVVV 408

Query: 159 HRWECHGALRLLE------AVGIAHLALKL-----ILVSSHS---DRYKEVYHLETHLQD 204
           +  + H    L+E       + I  + L+L        + H    D Y      ++    
Sbjct: 409 N--KLH-KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 205 MRPEDLYQY 213
               D Y Y
Sbjct: 466 PPYLDQYFY 474

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	214
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.92
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.91
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.9
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	99.34
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	98.76
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	98.65
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	98.54
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	98.54
1n3j_A	119	A612L, histone H3 lysine methyltransferase; beta b	97.15
3f9x_A	166	Histone-lysine N-methyltransferase SETD8; methyltr	96.72
3ooi_A	232	Histone-lysine N-methyltransferase, H3 lysine-36 l	95.81
3ope_A	222	Probable histone-lysine N-methyltransferase ASH1L;	95.6
2w5y_A	192	Histone-lysine N-methyltransferase HRX; transcript	95.6
3smt_A	497	Histone-lysine N-methyltransferase SETD3; histone	95.18
3h6l_A	278	Histone-lysine N-methyltransferase SETD2; SET doma	95.07
3hna_A	287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	95.0
2yqq_A	56	Zinc finger HIT domain-containing protein 3; struc	94.37
2qpw_A	149	PR domain zinc finger protein 2; methyltransferase	94.12
3bo5_A	290	Histone-lysine N-methyltransferase setmar; SET dom	93.94
1h3i_A	293	Histone H3 lysine 4 specific methyltransferase; 2.	93.59
3s8p_A	273	Histone-lysine N-methyltransferase SUV420H1; SET d	93.46
3qxy_A	449	N-lysine methyltransferase SETD6; epigenetics, pro	93.35
1mvh_A	299	Cryptic LOCI regulator 4; lysine methyltransferase	93.35
1x4s_A	59	Protein FON, zinc finger HIT domain containing pro	93.26
2f69_A	261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	93.16
1ml9_A	302	Histone H3 methyltransferase DIM-5; adoMet-depende	93.06
3rq4_A	247	Histone-lysine N-methyltransferase SUV420H2; suppr	90.78
3ep0_A	170	PR domain zinc finger protein 12; PR domain-contai	90.05
2r3a_A	300	Histone-lysine N-methyltransferase SUV39H2; histon	89.9
2h21_A	440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	89.46
3db5_A	151	PR domain zinc finger protein 4; methyltransferase	89.02
3dal_A	196	PR domain zinc finger protein 1; methyltransferase	86.38
1wvo_A	79	Sialic acid synthase; antifreeze protein like doma	85.62

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.92  E-value=2.7e-25  Score=207.60  Aligned_cols=131  Identities=24%  Similarity=0.493  Sum_probs=116.4

Q ss_pred             CCCcEEEEEcCCCccEEEEccCCCCCCEEEEeccceeeecCCCCCCccccCCCCCCCcccCCCCCceeecChHHHhHhhh
Q psy10008         77 ASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWL  156 (214)
Q Consensus        77 ~s~~vei~~s~~~GRgl~Atrdi~~GevIl~e~P~~~v~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~YCS~~C~~~aw~  156 (214)
                      ..++|+|..++.+||||||++||++||+|+.|+|+++++.+.....+|.+|++....+.+|++|+.++|||++||+.+| 
T Consensus         5 ~~~~v~v~~~~~~GR~lvAtr~i~~Ge~Il~e~P~~~v~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w-   83 (490)
T 3n71_A            5 SMENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAW-   83 (490)
T ss_dssp             CCTTEEEEECSSSCEEEEESSCBCTTCEEEEECCSEEEECGGGTTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHH-
T ss_pred             CCCceEEEecCCCCceEEeccCCCCCCEEEecCCceEEecccccCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhh-
Confidence            3478999999999999999999999999999999999888888889999999988889999999999999999999999 


Q ss_pred             cchHHhhHHHHHhhhhhc--hHHHHHHHHHccc------CchhhhhHhhhhhccCCCCCCC
Q psy10008        157 RYHRWECHGALRLLEAVG--IAHLALKLILVSS------HSDRYKEVYHLETHLQDMRPED  209 (214)
Q Consensus       157 ~~H~~EC~~~l~~l~~~~--~~~LalR~l~~~~------~~~~~~~v~~L~sH~d~~~~~d  209 (214)
                      .+|+.|| .++..+...+  .+++++|++++..      .++.|..|..|++|.++++.++
T Consensus        84 ~~Hk~eC-~~~~~~~~~p~~~~rl~lRiL~~~~~~~~~~~~~~~~~~~~L~sh~~~~~~~~  143 (490)
T 3n71_A           84 LNHKNEC-AAIKKYGKVPNENIRLAARIMWRVEREGTGLTEGCLVSVDDLQNHVEHFGEEE  143 (490)
T ss_dssp             HHHHHHH-HHHHHHTSCCCHHHHHHHHHHHHHHHTTSSBCTTCSSBGGGSCCCGGGCCHHH
T ss_pred             hHHHHHh-HHHHhcCcCCCHHHHHHHHHHHHhhccCccCcchhhhHHHHHHhhhhhcCchH
Confidence            5999999 8888876544  8899999998642      3455789999999999998654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.91  E-value=6.3e-25  Score=202.30  Aligned_cols=128  Identities=26%  Similarity=0.495  Sum_probs=113.6

Q ss_pred             CcEEEEEcCCCccEEEEccCCCCCCEEEEeccceeeecCCCCCCccccCCCCCCCcccCCCCCceeecChHHHhHhhhcc
Q psy10008         79 NKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRY  158 (214)
Q Consensus        79 ~~vei~~s~~~GRgl~Atrdi~~GevIl~e~P~~~v~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~YCS~~C~~~aw~~~  158 (214)
                      ++|++..+|++||||||+++|++||+|+.|+|++.++.......+|.+|++....+.+|++|+.++|||++||+.+| .+
T Consensus         7 ~~ve~~~~~~~GRgl~A~r~i~~Ge~Il~e~P~a~~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w-~~   85 (433)
T 3qww_A            7 GGLERFCSAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDW-PL   85 (433)
T ss_dssp             TTEEEEECTTSCEEEEESSCBCTTCEEEEEECSEEEECGGGTTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHH-HH
T ss_pred             CcEEEeecCCCcCeEEECCCCCCCCEEEecCCceEEecccccCCcCCcccccCCCCCCCCCCcceeecChhhhhhhh-hH
Confidence            78999999999999999999999999999999999998888889999999988889999999999999999999999 79


Q ss_pred             hHHhhHHHHHhhhh--hc--hHHHHHHHHHccc------CchhhhhHhhhhhccCCCCCC
Q psy10008        159 HRWECHGALRLLEA--VG--IAHLALKLILVSS------HSDRYKEVYHLETHLQDMRPE  208 (214)
Q Consensus       159 H~~EC~~~l~~l~~--~~--~~~LalR~l~~~~------~~~~~~~v~~L~sH~d~~~~~  208 (214)
                      |+.|| ..+..+..  .+  .++|++|++++..      +++.+..|..|++|.++++.+
T Consensus        86 Hk~eC-~~l~~~~~~~~p~~~~rl~~Ril~~~~~~~~~~~~~~~~~~~~L~sh~~~~~~~  144 (433)
T 3qww_A           86 HKLEC-SSMVVLGENWNPSETVRLTARILAKQKIHPERTPSEKLLAVREFESHLDKLDNE  144 (433)
T ss_dssp             HTTTH-HHHHHSSTTCCCCHHHHHHHHHHHHHHHCCSCCGGGSSCCGGGCCCCGGGCCHH
T ss_pred             HHHHH-HHHHHhCccCCCcHHHHHHHHHHHHhhhccccCchhhhhhHHHHHhhhhccChH
Confidence            99999 88877642  22  7899999998731      345677899999999998754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.90  E-value=4.4e-24  Score=196.06  Aligned_cols=130  Identities=22%  Similarity=0.508  Sum_probs=112.8

Q ss_pred             CCCcEEEEEcCCCccEEEEccCCCCCCEEEEeccceeeecCCCCCCccccCCCCCCCcccCCCCCceeecChHHHhHhhh
Q psy10008         77 ASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWL  156 (214)
Q Consensus        77 ~s~~vei~~s~~~GRgl~Atrdi~~GevIl~e~P~~~v~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~YCS~~C~~~aw~  156 (214)
                      ....|+...+|++||||||++||++||+|+.|.|++.++.+.....+|.+|+++...+.+|++|+.++|||++||+.+|+
T Consensus         3 ~~~~i~~~~~~~~GR~l~Atr~i~~Ge~Il~e~P~~~~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~   82 (429)
T 3qwp_A            3 EPLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWP   82 (429)
T ss_dssp             -CCSEEEEECSSSSEEEEESSCBCTTCEEEEECCSEEEECGGGBTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTHH
T ss_pred             cccceeecccCCCCCeEEeCCCCCCCCEEEecCCceeeeccccCCCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhhh
Confidence            35678888999999999999999999999999999999988888999999999888899999999999999999999995


Q ss_pred             cchHHhhHHHHHhhh-hhc--hHHHHHHHHHccc-----CchhhhhHhhhhhccCCCCCC
Q psy10008        157 RYHRWECHGALRLLE-AVG--IAHLALKLILVSS-----HSDRYKEVYHLETHLQDMRPE  208 (214)
Q Consensus       157 ~~H~~EC~~~l~~l~-~~~--~~~LalR~l~~~~-----~~~~~~~v~~L~sH~d~~~~~  208 (214)
                       +|+.|| ..+..+. .++  .+++++|++++..     .++.|..|..|++|.++++.+
T Consensus        83 -~Hk~eC-~~~~~~~~~~~~~~~rl~~rill~~~~~~~~~~~~~~~~~~L~sh~~~~~~~  140 (429)
T 3qwp_A           83 -DHKREC-KCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYDLESNINKLTED  140 (429)
T ss_dssp             -HHHHHH-HHHHHTTTCCCCHHHHHHHHHHHHHHHSCCCGGGSSSCGGGCCCCGGGCCHH
T ss_pred             -hhHHhh-hhHHhcCccCCChHHHHHHHHHHHHhcCCCCchhhhhhHHHHhhChhhcChh
Confidence             999999 8887764 333  7888899988632     235677899999999988643

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}

Probab=99.34  E-value=2.9e-13  Score=93.34  Aligned_cols=55  Identities=25%  Similarity=0.657  Sum_probs=37.7

Q ss_pred             cCCCCCCEEEEeccceeeecCCCCCCccccCCCCCCCcccCCCCCceeecChHHHhHhhhcchHHhh
Q psy10008         97 EDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWEC  163 (214)
Q Consensus        97 rdi~~GevIl~e~P~~~v~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~YCS~~C~~~aw~~~H~~EC  163 (214)
                      ++|++||+|+.+.|.         ...|..|++  ..+.+|++|+.++|||.+||..+|. .|+.+|
T Consensus         2 ~~~~~G~~il~~~~~---------~~~C~~C~~--~~~~~Cs~C~~~~YCs~~CQ~~~W~-~Hk~~C   56 (64)
T 2odd_A            2 NLYFQGENLYFQGDS---------SESCWNCGR--KASETCSGCNTARYCGSFCQHKDWE-KHHHIC   56 (64)
T ss_dssp             -------------CC---------SSSCTTTSS--CCCEEETTTSCCEESSHHHHHHHHH-HHTTTT
T ss_pred             CcCCCCCEEeeCCCC---------CCcCccccC--CCcccCCCCCChhhCCHHHHHHHHH-HHhHHH
Confidence            689999999999983         468999998  4688999999999999999999995 899999

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=98.76  E-value=3.5e-09  Score=69.56  Aligned_cols=46  Identities=28%  Similarity=0.662  Sum_probs=35.4

Q ss_pred             ecCCCCCCccccCCCCCCCcccCCCCCceeecChHHHhHhhhcchHHhh
Q psy10008        115 ILPPCSMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWEC  163 (214)
Q Consensus       115 ~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~YCS~~C~~~aw~~~H~~EC  163 (214)
                      ++++.....|..|++.  .+.+|++|+.+.|||.+||..+|. .|+.+|
T Consensus         3 ~~~~~~~~~C~~C~~~--~~~~C~~C~~~~YCs~~CQ~~~W~-~Hk~~C   48 (52)
T 2jw6_A            3 MDAERKEQSCVNCGRE--AMSECTGCHKVNYCSTFCQRKDWK-DHQHIC   48 (52)
T ss_dssp             --------CCSSSSSS--CSEECTTTCSSEESSHHHHHHHTT-TGGGTT
T ss_pred             cCccccCCcCCCCCCC--CcCcCCCCCCEeecCHHHHHHHHH-HHCHHH
Confidence            4445556799999985  689999999999999999999995 699999

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=98.65  E-value=1.3e-08  Score=69.10  Aligned_cols=41  Identities=32%  Similarity=0.776  Sum_probs=37.1

Q ss_pred             CCCccccCCCCCCCcccCCCCCceeecChHHHhHhhhcchHHhh
Q psy10008        120 SMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWEC  163 (214)
Q Consensus       120 ~~~~C~~C~~~~~~~~~C~~C~~~~YCS~~C~~~aw~~~H~~EC  163 (214)
                      ....|..|++  ..+.+|.+|+.++|||++||..+|. .|+.+|
T Consensus        14 ~~~~C~~C~~--~~~~~Cs~C~~v~YCs~~CQ~~~W~-~Hk~~C   54 (60)
T 2dj8_A           14 SSESCWNCGR--KASETCSGCNTARYCGSFCQHKDWE-KHHHIC   54 (60)
T ss_dssp             CSCCCSSSCS--CCCEECTTTSCCEESSHHHHHHTHH-HHTTTS
T ss_pred             CCcccccCCC--CCcccCCCCCCEeeeCHHHHHHHHH-HHHHHH
Confidence            4578999998  4688999999999999999999995 799999

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}

Probab=98.54  E-value=3.5e-08  Score=66.95  Aligned_cols=41  Identities=32%  Similarity=0.776  Sum_probs=36.9

Q ss_pred             CCCccccCCCCCCCcccCCCCCceeecChHHHhHhhhcchHHhh
Q psy10008        120 SMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWEC  163 (214)
Q Consensus       120 ~~~~C~~C~~~~~~~~~C~~C~~~~YCS~~C~~~aw~~~H~~EC  163 (214)
                      ....|..|++  ..+.+|.+|+.++|||.+||..+|. .|+.+|
T Consensus        12 ~~~~C~~C~~--~~~~~Cs~C~~v~YCs~~CQ~~dW~-~Hk~~C   52 (60)
T 2od1_A           12 SSESCWNCGR--KASETCSGCNTARYCGSFCQHKDWE-KHHHIC   52 (60)
T ss_dssp             CSSCCTTTSS--CCCEECTTTSCCEESSHHHHHHHHH-HHTTTS
T ss_pred             CCCccccCCC--cccccCCCCCCeeecCHHHHHHHHH-HHhHHH
Confidence            3578999998  4688999999999999999999995 799999

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A

Probab=98.54  E-value=5.6e-08  Score=68.10  Aligned_cols=40  Identities=28%  Similarity=0.795  Sum_probs=36.4

Q ss_pred             CCccccCCCCCCCcccCCCCCceeecChHHHhHhhhcchHHhh
Q psy10008        121 MSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWEC  163 (214)
Q Consensus       121 ~~~C~~C~~~~~~~~~C~~C~~~~YCS~~C~~~aw~~~H~~EC  163 (214)
                      ...|..|.+.  ...+|.+|+.++|||.+||.++|.. |+.+|
T Consensus        15 ~~~C~~C~~~--~~~~Cs~Ck~v~YCs~eCQ~~~W~~-HK~~C   54 (70)
T 2d8q_A           15 RPRCAYCSAE--ASKRCSRCQNEWYCCRECQVKHWEK-HGKTC   54 (70)
T ss_dssp             CCBCSSSCCB--CCCBCTTTSCCBCSCHHHHHHTHHH-HHHHC
T ss_pred             CCcCCCCCCc--ccccCCCCCCEeeCCHHHhHHHHHH-HHHHH
Confidence            5689999984  6889999999999999999999955 99999

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*

Probab=97.15  E-value=0.00023  Score=53.72  Aligned_cols=30  Identities=20%  Similarity=0.293  Sum_probs=28.2

Q ss_pred             CCCcEEEEEcCCCccEEEEccCCCCCCEEE
Q psy10008         77 ASNKIKMQTSNAKGRHVIAVEDVHKGDTLF  106 (214)
Q Consensus        77 ~s~~vei~~s~~~GRgl~Atrdi~~GevIl  106 (214)
                      ++..++|+.++.+|+||||+++|++|++|.
T Consensus         2 ~~~~~~v~~s~~~G~GvfA~~~I~~G~~I~   31 (119)
T 1n3j_A            2 FNDRVIVKKSPLGGYGVFARKSFEKGELVE   31 (119)
T ss_dssp             BCSSEEEECSCSSCCEEEECCCBCSCEEEC
T ss_pred             CCCCEEEEECCCceeEEEECCcCCCCCEEE
Confidence            568899999999999999999999999997

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*

Probab=96.72  E-value=0.0017  Score=51.31  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=30.4

Q ss_pred             CCcEEEEEcCCCccEEEEccCCCCCCEEEEeccce
Q psy10008         78 SNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVA  112 (214)
Q Consensus        78 s~~vei~~s~~~GRgl~Atrdi~~GevIl~e~P~~  112 (214)
                      ...++|..++.+|+||||+++|++|++|..-.+-+
T Consensus        29 ~~~l~v~~~~~kG~Gl~A~~~I~~G~~I~ey~Gev   63 (166)
T 3f9x_A           29 EEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDL   63 (166)
T ss_dssp             CTTEEEEEETTTEEEEEESSCBCTTCEEEECCSEE
T ss_pred             ccCeEEEECCCceeEEEECCCcCCCCEEEEeeceE
Confidence            35689999999999999999999999998766544

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}

Probab=95.81  E-value=0.0087  Score=50.30  Aligned_cols=34  Identities=12%  Similarity=0.144  Sum_probs=29.9

Q ss_pred             CCCcEEEEEcCCCccEEEEccCCCCCCEEEEecc
Q psy10008         77 ASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKP  110 (214)
Q Consensus        77 ~s~~vei~~s~~~GRgl~Atrdi~~GevIl~e~P  110 (214)
                      ....++|..++.+|.||||+++|++|+.|..-..
T Consensus        90 ~~~~lev~~t~~kG~Gl~A~~~I~~G~~I~ey~G  123 (232)
T 3ooi_A           90 QYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVG  123 (232)
T ss_dssp             CCCCEEEEECSSSSEEEEESSCBCTTCEEEECCE
T ss_pred             CCccEEEEEcCCceeEEEECceecCCceeeEeee
Confidence            4568999999999999999999999999976443

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}

Probab=95.60  E-value=0.01  Score=49.38  Aligned_cols=35  Identities=11%  Similarity=0.085  Sum_probs=30.9

Q ss_pred             CCcEEEEEcCCCccEEEEccCCCCCCEEEEeccce
Q psy10008         78 SNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVA  112 (214)
Q Consensus        78 s~~vei~~s~~~GRgl~Atrdi~~GevIl~e~P~~  112 (214)
                      ...++|..++.+|.||||+++|++|+.|..-.+-+
T Consensus        73 ~~~lev~~t~~kG~Gl~A~~~I~~G~~I~ey~Gev  107 (222)
T 3ope_A           73 VQCLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEV  107 (222)
T ss_dssp             CSCCEEEECTTSSEEEECSSCBCTTCEEEECCSEE
T ss_pred             cccEEEEEcCCCceEEEECceECCCCEEEEeccee
Confidence            35699999999999999999999999998776655

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*

Probab=95.60  E-value=0.01  Score=48.66  Aligned_cols=34  Identities=12%  Similarity=0.230  Sum_probs=29.6

Q ss_pred             CCcEEEEEcCCCccEEEEccCCCCCCEEEEeccc
Q psy10008         78 SNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPV  111 (214)
Q Consensus        78 s~~vei~~s~~~GRgl~Atrdi~~GevIl~e~P~  111 (214)
                      ...++|..++.+|+||||+++|++|+.|..-..-
T Consensus        51 ~~~l~V~~s~~~G~GlfA~~~I~~G~~I~EY~Ge   84 (192)
T 2w5y_A           51 KEAVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGN   84 (192)
T ss_dssp             HHHEEEEECSSSSEEEEESSCBCTTCEEEECCSE
T ss_pred             CCcEEEEEcCCceeEEEECcccCCCCEEEEeeee
Confidence            3679999999999999999999999999854443

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}

Probab=95.18  E-value=0.024  Score=52.73  Aligned_cols=99  Identities=15%  Similarity=0.153  Sum_probs=55.7

Q ss_pred             HHHHHhhhhhhhhhhccccccccchhhhhhHHHHHHHHHHHHhcccCCCCCCCCcccCCCccc--CCCCcccccCCCcEE
Q psy10008          5 DVQETLSSSLKLCRLQDTSHLDFKEDVLTIEKSEENSVEAMSMQVSSTSSSASSSVASLPSLA--CGESHTLMCASNKIK   82 (214)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~--~~~n~~ip~~s~~ve   82 (214)
                      +++...+.-+.+|..|-.+-.+.-+...++.+-..+ +..++...+...+.  ......+.+-  ...|. +. + .+|+
T Consensus        23 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~r~~~~~~ll~W~~~~G-~~-~-~~v~   96 (497)
T 3smt_A           23 EILNLTSELLQKCSSPAPGPGKEWEEYVQIRTLVEK-IRKKQKGLSVTFDG--KREDYFPDLMKWASENG-AS-V-EGFE   96 (497)
T ss_dssp             HHHHHHHHHHHHTSSCC----CHHHHHHHHHHHHHH-HHHTSCSCSCCCSS--CGGGGHHHHHHHHHHTT-CC-C-TTEE
T ss_pred             HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHH-HHHHhcccCCcccc--ccHHHHHHHHHHHHHCC-CC-c-cceE
Confidence            455666677789999988888888888777654333 22222111111111  0011111110  01221 11 2 4799


Q ss_pred             EEEcCCCccEEEEccCCCCCCEEEEec
Q psy10008         83 MQTSNAKGRHVIAVEDVHKGDTLFVEK  109 (214)
Q Consensus        83 i~~s~~~GRgl~Atrdi~~GevIl~e~  109 (214)
                      +...+..||||+|++||++|++|+.-+
T Consensus        97 i~~~~~~GrGl~A~~dI~~ge~ll~IP  123 (497)
T 3smt_A           97 MVNFKEEGFGLRATRDIKAEELFLWVP  123 (497)
T ss_dssp             EEEETTTEEEEEESSCBCTTCEEEEEE
T ss_pred             EEEcCCCccEEEEcccCCCCCEEEEcC
Confidence            999999999999999999999988654

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*

Probab=95.00  E-value=0.023  Score=49.30  Aligned_cols=37  Identities=11%  Similarity=0.128  Sum_probs=31.9

Q ss_pred             cCCCcEEEEEcCCCccEEEEccCCCCCCEEEEeccce
Q psy10008         76 CASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVA  112 (214)
Q Consensus        76 ~~s~~vei~~s~~~GRgl~Atrdi~~GevIl~e~P~~  112 (214)
                      .....++|..++.+|.||||+++|++|+.|..-..-+
T Consensus       144 g~~~~l~v~~t~~kG~Gv~A~~~I~~G~~I~eY~Gev  180 (287)
T 3hna_A          144 GLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGEL  180 (287)
T ss_dssp             CCCSCEEEEECSSSSEEEEESSCBCTTCEEEEECEEE
T ss_pred             CCcccEEEEEcCCCceEEEeCcccCCCCEEEEeeeEE
Confidence            4567899999999999999999999999998655444

>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.37  E-value=0.04  Score=36.56  Aligned_cols=31  Identities=29%  Similarity=0.663  Sum_probs=26.1

Q ss_pred             CCccccCCCCCCCcccCCCCCceeecChHHHhHh
Q psy10008        121 MSNCNHCCTSISAPIPCNECILAVYCSESCRREA  154 (214)
Q Consensus       121 ~~~C~~C~~~~~~~~~C~~C~~~~YCS~~C~~~a  154 (214)
                      ...|.-|..  ...+.|++| .+.|||..|.+.+
T Consensus        12 ~~~C~vC~~--~~kY~CPrC-~~~yCSl~C~k~H   42 (56)
T 2yqq_A           12 TVVCVICLE--KPKYRCPAC-RVPYCSVVCFRKH   42 (56)
T ss_dssp             CCCCTTTCS--CCSEECTTT-CCEESSHHHHHHH
T ss_pred             CCccCcCcC--CCeeeCCCC-CCCeeCHHHHHHH
Confidence            347999988  678899999 7999999997654

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*

Probab=94.12  E-value=0.047  Score=42.87  Aligned_cols=41  Identities=22%  Similarity=0.245  Sum_probs=32.6

Q ss_pred             cccCCCCcccccCCCcEEEEEcC--CCccEEEEccCCCCCCEE
Q psy10008         65 SLACGESHTLMCASNKIKMQTSN--AKGRHVIAVEDVHKGDTL  105 (214)
Q Consensus        65 ~l~~~~n~~ip~~s~~vei~~s~--~~GRgl~Atrdi~~GevI  105 (214)
                      ++..-++.....+...++|+.+.  .+|.||||+++|++|+.|
T Consensus        15 ~~~~~~~~~~~~lp~~l~l~~S~i~~~G~GVfA~~~I~kG~~~   57 (149)
T 2qpw_A           15 TLAEVPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKF   57 (149)
T ss_dssp             CGGGSCHHHHHTCCTTEEEEECSSCTTSEEEEESSCBCTTCEE
T ss_pred             ccchhhHHHHhCCCCCeEEEEcCCCCCceEEEECCccCCCCEE
Confidence            33334455556678999999985  689999999999999997

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}

Probab=93.94  E-value=0.056  Score=46.88  Aligned_cols=37  Identities=14%  Similarity=0.150  Sum_probs=31.0

Q ss_pred             Cccc-ccCCCcEEEEEcCCCccEEEEccCCCCCCEEEE
Q psy10008         71 SHTL-MCASNKIKMQTSNAKGRHVIAVEDVHKGDTLFV  107 (214)
Q Consensus        71 n~~i-p~~s~~vei~~s~~~GRgl~Atrdi~~GevIl~  107 (214)
                      |..+ ......++|..++.+|.||||+++|++|+.|..
T Consensus       117 Nr~~q~g~~~~l~V~~s~~~G~Gl~A~~~I~~G~~I~E  154 (290)
T 3bo5_A          117 NRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCE  154 (290)
T ss_dssp             TCCGGGCCCSCEEEEECSSSSEEEEESSCBCTTCEEEE
T ss_pred             CeEcccCCcccEEEEEcCCCcceEeECCccCCCCEEEE
Confidence            4444 235678999999999999999999999999975

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A

Probab=93.59  E-value=0.072  Score=45.73  Aligned_cols=38  Identities=13%  Similarity=0.090  Sum_probs=29.8

Q ss_pred             ccCCCcEEEEEcCC--CccEEEEccCCCCCCEEEEeccce
Q psy10008         75 MCASNKIKMQTSNA--KGRHVIAVEDVHKGDTLFVEKPVA  112 (214)
Q Consensus        75 p~~s~~vei~~s~~--~GRgl~Atrdi~~GevIl~e~P~~  112 (214)
                      |..+..++|+.++.  +|+||||+++|++|+.|..-..-+
T Consensus       159 p~e~~~~~v~~S~i~GkG~Gvfa~~~I~~G~~I~ey~Ge~  198 (293)
T 1h3i_A          159 PYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVR  198 (293)
T ss_dssp             HHHHTTEEEEECSSSSSSEEEEESSCBCTTCEEEEECCEE
T ss_pred             cccceeEEEeeeecCCCcceEEECCcCCCCCEEEEeccEE
Confidence            34567899998875  559999999999999997644433

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}

Probab=93.46  E-value=0.066  Score=46.27  Aligned_cols=32  Identities=13%  Similarity=0.364  Sum_probs=26.9

Q ss_pred             cCCCcEEEEEcC-----CCccEEEEccCCCCCCEEEE
Q psy10008         76 CASNKIKMQTSN-----AKGRHVIAVEDVHKGDTLFV  107 (214)
Q Consensus        76 ~~s~~vei~~s~-----~~GRgl~Atrdi~~GevIl~  107 (214)
                      ....+++|..+.     .+|+||||+++|++|+.|..
T Consensus       128 ~~~~gfeV~~~~ry~~e~~G~GlfA~~~I~kGe~I~E  164 (273)
T 3s8p_A          128 ATDSGFEILPCNRYSSEQNGAKIVATKEWKRNDKIEL  164 (273)
T ss_dssp             SGGGCEEEEEECCCTTCSSEEEEEESSCBCTTCEEEE
T ss_pred             CCCCCceEEeccceeecCCCceEEECCccCCCCEEEE
Confidence            345788888764     59999999999999999984

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*

Probab=93.35  E-value=0.053  Score=49.57  Aligned_cols=33  Identities=30%  Similarity=0.452  Sum_probs=26.3

Q ss_pred             CCCcEEEEEc-CCCccEEEEccCCCCCCEEEEec
Q psy10008         77 ASNKIKMQTS-NAKGRHVIAVEDVHKGDTLFVEK  109 (214)
Q Consensus        77 ~s~~vei~~s-~~~GRgl~Atrdi~~GevIl~e~  109 (214)
                      ++..|+|... +..||||||+++|++|++|+.-+
T Consensus        36 ~~~~v~i~~~~~~~G~Gv~A~~dI~~ge~ll~IP   69 (449)
T 3qxy_A           36 LSPKVAVSRQGTVAGYGMVARESVQAGELLFVVP   69 (449)
T ss_dssp             ECTTEEEESSSCSSSSEEEESSCBCTTCEEEEEE
T ss_pred             eCCceEEEecCCCceEEEEECCCCCCCCEEEEeC
Confidence            3456777764 47999999999999999987654

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A

Probab=93.35  E-value=0.081  Score=46.05  Aligned_cols=34  Identities=12%  Similarity=0.071  Sum_probs=29.7

Q ss_pred             cCCCcEEEEEcCCCccEEEEccCCCCCCEEEEec
Q psy10008         76 CASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEK  109 (214)
Q Consensus        76 ~~s~~vei~~s~~~GRgl~Atrdi~~GevIl~e~  109 (214)
                      .....++|..++.+|.||+|+++|++|+.|..-.
T Consensus       134 g~~~~l~v~~t~~~G~Gv~A~~~I~kG~~I~EY~  167 (299)
T 1mvh_A          134 GRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYL  167 (299)
T ss_dssp             CCCSCEEEEECSSSSEEEEESSCBCTTCEEEECC
T ss_pred             cccccEEEEEcCCCcceEeeCceeCCCCEEEEee
Confidence            3467899999999999999999999999997633

>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2

Probab=93.26  E-value=0.039  Score=36.98  Aligned_cols=31  Identities=35%  Similarity=0.785  Sum_probs=26.1

Q ss_pred             CccccCCCC--CCCcccCCCCCceeecChHHHhH
Q psy10008        122 SNCNHCCTS--ISAPIPCNECILAVYCSESCRRE  153 (214)
Q Consensus       122 ~~C~~C~~~--~~~~~~C~~C~~~~YCS~~C~~~  153 (214)
                      ..|.-|...  ....+.|++| .+.|||..|.+.
T Consensus        12 ~~C~vC~~~~~~~akY~CPrC-~~rYCSl~C~k~   44 (59)
T 1x4s_A           12 GPCGFCPAGEVQPARYTCPRC-NAPYCSLRCYRT   44 (59)
T ss_dssp             EEECSSCTTCCEEECEECTTT-CCEESSHHHHHH
T ss_pred             CcCcCCCCCcCCCccccCcCC-CCCccChHHHHH
Confidence            579999862  4568999999 799999999875

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*

Probab=93.16  E-value=0.051  Score=46.50  Aligned_cols=36  Identities=14%  Similarity=0.122  Sum_probs=29.5

Q ss_pred             CCCcEEEEEcCC--CccEEEEccCCCCCCEEEEeccce
Q psy10008         77 ASNKIKMQTSNA--KGRHVIAVEDVHKGDTLFVEKPVA  112 (214)
Q Consensus        77 ~s~~vei~~s~~--~GRgl~Atrdi~~GevIl~e~P~~  112 (214)
                      .+..++|+.++.  +|+||||+++|++|++|..-..-+
T Consensus       107 ~~~~~~v~~S~i~~kG~GvfA~~~I~~G~~I~eY~Gev  144 (261)
T 2f69_A          107 ESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVR  144 (261)
T ss_dssp             HHTTEEEEECSSTTCCEEEEESSCBCTTCEEEEECCEE
T ss_pred             cCceEEEEecCCCCCceEEEECcccCCCCEEEEEeeEE
Confidence            356899999875  599999999999999998654443

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*

Probab=93.06  E-value=0.083  Score=45.88  Aligned_cols=31  Identities=10%  Similarity=0.192  Sum_probs=28.4

Q ss_pred             CCCcEEEEEcCCCccEEEEccCCCCCCEEEE
Q psy10008         77 ASNKIKMQTSNAKGRHVIAVEDVHKGDTLFV  107 (214)
Q Consensus        77 ~s~~vei~~s~~~GRgl~Atrdi~~GevIl~  107 (214)
                      ....++|..++.+|.||+|+++|++|+.|..
T Consensus       131 ~~~~l~v~~t~~kG~Gv~A~~~I~~G~~I~E  161 (302)
T 1ml9_A          131 RTVPLQIFRTKDRGWGVKCPVNIKRGQFVDR  161 (302)
T ss_dssp             CCSCEEEEECSSSCEEEECSSCBCTTCEEEE
T ss_pred             CccceEEEEcCCCceEEEECCeeCCCCEEEE
Confidence            4578999999999999999999999999976

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}

Probab=90.78  E-value=0.21  Score=42.40  Aligned_cols=31  Identities=10%  Similarity=0.272  Sum_probs=26.1

Q ss_pred             CCCcEEEEEc-----CCCccEEEEccCCCCCCEEEE
Q psy10008         77 ASNKIKMQTS-----NAKGRHVIAVEDVHKGDTLFV  107 (214)
Q Consensus        77 ~s~~vei~~s-----~~~GRgl~Atrdi~~GevIl~  107 (214)
                      ...+++|..+     +.+|+||||+++|++||+|..
T Consensus       101 ~~~g~eV~~~~Ry~~~~~G~Gv~A~~~I~kGE~I~e  136 (247)
T 3rq4_A          101 PESGFTILPCTRYSMETNGAKIVSTRAWKKNEKLEL  136 (247)
T ss_dssp             GGGCEEEEECCCCTTCSSCEEEEESSCBCTTCEEEE
T ss_pred             CCCCcEEEeeeeeeecCCcceEEeCCccCCCCEEEE
Confidence            4577888765     468999999999999999975

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}

Probab=90.05  E-value=0.28  Score=39.35  Aligned_cols=32  Identities=9%  Similarity=0.187  Sum_probs=27.7

Q ss_pred             ccCCCcEEEEEc--CCCccEEEEccCCCCCCEEE
Q psy10008         75 MCASNKIKMQTS--NAKGRHVIAVEDVHKGDTLF  106 (214)
Q Consensus        75 p~~s~~vei~~s--~~~GRgl~Atrdi~~GevIl  106 (214)
                      -.+...++|+.+  ++.|.||||+++|++|+.+-
T Consensus        23 lsLP~~l~l~~S~i~~~G~GVfA~~~IpkGt~fG   56 (170)
T 3ep0_A           23 LVLPAEVIIAQSSIPGEGLGIFSKTWIKAGTEMG   56 (170)
T ss_dssp             SSCCTTEEEEECSSSSCSEEEEESSCBCTTCEEE
T ss_pred             cCCCCCeEEEEcCCCCCceEEEECcccCCCCEEE
Confidence            446789999998  46799999999999999975

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}

Probab=89.90  E-value=0.33  Score=42.25  Aligned_cols=34  Identities=6%  Similarity=0.075  Sum_probs=27.7

Q ss_pred             CCCcEEEEEcC-CCccEEEEccCCCCCCEEEEecc
Q psy10008         77 ASNKIKMQTSN-AKGRHVIAVEDVHKGDTLFVEKP  110 (214)
Q Consensus        77 ~s~~vei~~s~-~~GRgl~Atrdi~~GevIl~e~P  110 (214)
                      ....++|..+. .+|.||||+++|++|+.|..-..
T Consensus       138 ~~~~l~vfrt~~~kG~Gl~A~~~I~~G~~I~EY~G  172 (300)
T 2r3a_A          138 TQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVG  172 (300)
T ss_dssp             CCSCEEEEECSSSCCEEEEESSCBCTTCEEEEECC
T ss_pred             ccccEEEEEeCCCceEEEEeCccccCCCEeEEEee
Confidence            34678887764 79999999999999999986443

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*

Probab=89.46  E-value=0.24  Score=44.77  Aligned_cols=24  Identities=17%  Similarity=0.400  Sum_probs=20.2

Q ss_pred             CCccEEEEccCCCCCCEEEEeccc
Q psy10008         88 AKGRHVIAVEDVHKGDTLFVEKPV  111 (214)
Q Consensus        88 ~~GRgl~Atrdi~~GevIl~e~P~  111 (214)
                      ..||||||+++|++||+|+.-+.-
T Consensus        31 ~~GrGl~A~~~I~~ge~ll~IP~~   54 (440)
T 2h21_A           31 TEGLGLVALKDISRNDVILQVPKR   54 (440)
T ss_dssp             TTEEEEEESSCBCTTEEEEEEEGG
T ss_pred             CCCCEEEEcccCCCCCEEEEeChh
Confidence            369999999999999998876443

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}

Probab=89.02  E-value=0.38  Score=37.58  Aligned_cols=43  Identities=12%  Similarity=0.095  Sum_probs=31.1

Q ss_pred             CCcccCCCCcccccCCCcEEEEEc-CCCccEEEEccCCCCCCEEE
Q psy10008         63 LPSLACGESHTLMCASNKIKMQTS-NAKGRHVIAVEDVHKGDTLF  106 (214)
Q Consensus        63 ~p~l~~~~n~~ip~~s~~vei~~s-~~~GRgl~Atrdi~~GevIl  106 (214)
                      +|+.... +...-.+...++|+.+ ++.|.||||+++|++|+.+-
T Consensus         8 v~d~~v~-~ra~~slP~~l~l~~S~~~~g~GVfa~~~Ip~G~~fG   51 (151)
T 3db5_A            8 VPDTPIE-SRARLSLPKQLVLRQSIVGAEVGVWTGETIPVRTCFG   51 (151)
T ss_dssp             CCCCCCC-CHHHHTCCTTEEEEECC---CEEEEESSCBCTTCEEC
T ss_pred             ECCCcCC-ChHHhcCCCCeEEEEccCCCceEEEEecccCCCCEEE
Confidence            4444433 5555668899999986 57899999999999999874

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}

Probab=86.38  E-value=0.54  Score=38.55  Aligned_cols=37  Identities=11%  Similarity=0.092  Sum_probs=30.3

Q ss_pred             CCcccccCCCcEEEEEcC--CCccEEEEccCCCCCCEEE
Q psy10008         70 ESHTLMCASNKIKMQTSN--AKGRHVIAVEDVHKGDTLF  106 (214)
Q Consensus        70 ~n~~ip~~s~~vei~~s~--~~GRgl~Atrdi~~GevIl  106 (214)
                      ++...-.+...++|+.+.  ..|.||||++.|++|+.+-
T Consensus        49 ~~RA~~SLP~~L~lr~S~i~~~G~GVfa~~~IpkGt~fG   87 (196)
T 3dal_A           49 SVQAEASLPRNLLFKYATNSEEVIGVMSKEYIPKGTRFG   87 (196)
T ss_dssp             -CHHHHTCCTTEEEEECTTSCCEEEEEESSCBCTTEEEC
T ss_pred             CChHHhcCCCCeEEEECCCCCceeEEEEccccCCCCEEE
Confidence            345556688999999885  5999999999999999864

>1wvo_A Sialic acid synthase; antifreeze protein like domain, N-acetylneuraminic acid phosphate synthase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.62  E-value=0.34  Score=33.95  Aligned_cols=22  Identities=18%  Similarity=0.332  Sum_probs=18.3

Q ss_pred             CCCccEEEEccCCCCCCEEEEe
Q psy10008         87 NAKGRHVIAVEDVHKGDTLFVE  108 (214)
Q Consensus        87 ~~~GRgl~Atrdi~~GevIl~e  108 (214)
                      ...+|.|||++||++|++|-.+
T Consensus         3 ~~~rrslvA~rdI~~Gevit~~   24 (79)
T 1wvo_A            3 SGSSGSVVAKVKIPEGTILTMD   24 (79)
T ss_dssp             CCCCCEEEESSCBCTTCBCCGG
T ss_pred             ccccEEEEEeCccCCCCCcCHH
Confidence            3568999999999999997533

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	214
d2h2ja2	261	b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain	6e-05

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 40.3 bits (93), Expect = 6e-05
 Identities = 8/76 (10%), Positives = 26/76 (34%)

Query: 89  KGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVYCSE 148
           +G  ++A++D+ + D +       ++     + S     C+ +   +     ++     E
Sbjct: 31  EGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSRE 90

Query: 149 SCRREAWLRYHRWECH 164
               + +      E  
Sbjct: 91  DSVWKHYFGILPQETD 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	214
d2jw6a1	38	Zinc finger MYND domain-containing protein 2, MTG8	98.84
d2dj8a1	47	Zinc finger MYND domain-containing protein 2, MTG8	98.74
d2dana1	47	Zinc finger MYND domain-containing protein 10, ZMY	98.72
d2g46a1	119	Viral histone H3 Lysine 27 Methyltransferase {Para	97.15
d2h2ja2	261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	97.09
d1ml9a_	284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	95.4
d1mvha_	269	SET domain of Clr4 {Fission yeast (Schizosaccharom	95.16
d2f69a2	171	Histone H3 K4-specific methyltransferase SET7/9 ca	94.93
d1x4sa1	46	Zinc finger HIT domain containing protein 2, ZNHIT	89.32

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=7e-10  Score=67.52  Aligned_cols=38  Identities=34%  Similarity=0.892  Sum_probs=33.7

Q ss_pred             ccccCCCCCCCcccCCCCCceeecChHHHhHhhhcchHHhh
Q psy10008        123 NCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWEC  163 (214)
Q Consensus       123 ~C~~C~~~~~~~~~C~~C~~~~YCS~~C~~~aw~~~H~~EC  163 (214)
                      .|.+|.+.  ++.+|++|+.++|||.+||..+| ..|+.+|
T Consensus         1 sC~~C~~~--~~~~C~~C~~~~YCs~~CQ~~~W-~~Hk~~C   38 (38)
T d2jw6a1           1 SCVNCGRE--AMSECTGCHKVNYCSTFCQRKDW-KDHQHIC   38 (38)
T ss_dssp             CCSSSSSS--CSEECTTTCSSEESSHHHHHHHT-TTGGGTT
T ss_pred             CccccCcc--ccccCCCCCCEeeCCHHHHHHHH-HHHhhhC
Confidence            38889874  57899999999999999999999 6799887

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2.2e-09  Score=68.20  Aligned_cols=41  Identities=32%  Similarity=0.802  Sum_probs=36.1

Q ss_pred             CCCccccCCCCCCCcccCCCCCceeecChHHHhHhhhcchHHhh
Q psy10008        120 SMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWEC  163 (214)
Q Consensus       120 ~~~~C~~C~~~~~~~~~C~~C~~~~YCS~~C~~~aw~~~H~~EC  163 (214)
                      ....|..|.++  +...|++|+.++|||++||..+| ..|+.+|
T Consensus         7 ~~~~C~~C~~~--~~~~C~~C~~~~YCs~~CQ~~dW-~~Hk~~C   47 (47)
T d2dj8a1           7 SSESCWNCGRK--ASETCSGCNTARYCGSFCQHKDW-EKHHHIC   47 (47)
T ss_dssp             CSCCCSSSCSC--CCEECTTTSCCEESSHHHHHHTH-HHHTTTS
T ss_pred             CCCcCCCCCcc--ccccCCCCCCeeeCCHHHHHHHH-HHHhhhC
Confidence            45789999975  56789999999999999999999 6799887

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.1e-09  Score=68.33  Aligned_cols=40  Identities=28%  Similarity=0.782  Sum_probs=35.0

Q ss_pred             CCccccCCCCCCCcccCCCCCceeecChHHHhHhhhcchHHhh
Q psy10008        121 MSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWEC  163 (214)
Q Consensus       121 ~~~C~~C~~~~~~~~~C~~C~~~~YCS~~C~~~aw~~~H~~EC  163 (214)
                      ...|.+|++.  ...+|++|+.++|||.+||..+| ..|+.+|
T Consensus         8 ~~~C~~Cg~~--~~~~Cs~C~~~~YCs~~CQ~~dW-~~Hk~~C   47 (47)
T d2dana1           8 RPRCAYCSAE--ASKRCSRCQNEWYCCRECQVKHW-EKHGKTC   47 (47)
T ss_dssp             CCCCSSSCCC--CCEECTTTSCSEESSHHHHHHTH-HHHTTTC
T ss_pred             CCcCcCCCCh--hhccCCCCCCEeeCCHHHHHHHH-HHHhhhC
Confidence            3469999986  56799999999999999999999 6798877

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Viral histone H3 Lysine 27 Methyltransferase
domain: Viral histone H3 Lysine 27 Methyltransferase
species: Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]

Probab=97.15  E-value=8.4e-05  Score=54.11  Aligned_cols=35  Identities=17%  Similarity=0.185  Sum_probs=30.6

Q ss_pred             CCCcEEEEEcCCCccEEEEccCCCCCCEEEEeccc
Q psy10008         77 ASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPV  111 (214)
Q Consensus        77 ~s~~vei~~s~~~GRgl~Atrdi~~GevIl~e~P~  111 (214)
                      .++.|+|+.++.+|+||||+++|++|++|..-...
T Consensus         2 ~~~~v~v~~s~~~G~GvfA~~~i~~g~~i~~~~g~   36 (119)
T d2g46a1           2 FNDRVIVKKSPLGGYGVFARKSFEKGELVEECLCI   36 (119)
T ss_dssp             CCSSCEECCCSSCSSCEEECSCBCTTCCCEEEECE
T ss_pred             ccCcEEEEEcCCCceEEEECchhhCCCEEecccEE
Confidence            46789999999999999999999999999865443

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.09  E-value=7.8e-05  Score=60.09  Aligned_cols=28  Identities=14%  Similarity=0.309  Sum_probs=23.8

Q ss_pred             EcCCCccEEEEccCCCCCCEEEEeccce
Q psy10008         85 TSNAKGRHVIAVEDVHKGDTLFVEKPVA  112 (214)
Q Consensus        85 ~s~~~GRgl~Atrdi~~GevIl~e~P~~  112 (214)
                      ...++||||||++||++||+|+..++.+
T Consensus        27 ~~~~~GrGl~AtrdI~~Ge~il~vP~~~   54 (261)
T d2h2ja2          27 SVVTEGLGLVALKDISRNDVILQVPKRL   54 (261)
T ss_dssp             EEETTEEEEECSSCCCTTCEEEEEEGGG
T ss_pred             cCCCceeEEEECCcCCCCCEEEEeChHH
Confidence            4568899999999999999999885544

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

Probab=95.40  E-value=0.007  Score=50.09  Aligned_cols=37  Identities=8%  Similarity=0.062  Sum_probs=31.7

Q ss_pred             cCCCcEEEEEcCCCccEEEEccCCCCCCEEEEeccce
Q psy10008         76 CASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVA  112 (214)
Q Consensus        76 ~~s~~vei~~s~~~GRgl~Atrdi~~GevIl~e~P~~  112 (214)
                      .....++|+.++.+|.||||+++|++|+.|..-.+-+
T Consensus       122 g~~~~lev~kt~~kG~Gv~a~~~I~kGt~I~eY~Gev  158 (284)
T d1ml9a_         122 GRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEI  158 (284)
T ss_dssp             CCCSCEEEEECSSSCEEEECSSCBCTTCEEEECCCEE
T ss_pred             CCccCEEEEEcCCCceEEeeCCCcCCCCEEEEecCcc
Confidence            4567899999999999999999999999998655543

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.16  E-value=0.011  Score=48.65  Aligned_cols=43  Identities=9%  Similarity=0.044  Sum_probs=35.1

Q ss_pred             CCcccc-cCCCcEEEEEcCCCccEEEEccCCCCCCEEEEeccce
Q psy10008         70 ESHTLM-CASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVA  112 (214)
Q Consensus        70 ~n~~ip-~~s~~vei~~s~~~GRgl~Atrdi~~GevIl~e~P~~  112 (214)
                      .|..+. .....++|..++.+|.||||+++|++|+.|..-..-+
T Consensus       126 ~Nr~~q~g~~~~leV~~t~~~G~GvfA~~~I~kGt~I~eY~Gev  169 (269)
T d1mvha_         126 PNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEV  169 (269)
T ss_dssp             TTCTGGGCCCSCEEEEECSSSSEEEEESSCBCTTCEEEECCCEE
T ss_pred             CCeecCCCCccCEEEEEcCCCCeEEEeCcccCCCceEEEecceE
Confidence            355554 5678899999999999999999999999998655543

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0087  Score=45.87  Aligned_cols=36  Identities=14%  Similarity=0.175  Sum_probs=28.9

Q ss_pred             CCCcEEEEEc--CCCccEEEEccCCCCCCEEEEeccce
Q psy10008         77 ASNKIKMQTS--NAKGRHVIAVEDVHKGDTLFVEKPVA  112 (214)
Q Consensus        77 ~s~~vei~~s--~~~GRgl~Atrdi~~GevIl~e~P~~  112 (214)
                      -+..+.|..+  +++|+||||+++|++|++|..-...+
T Consensus        19 ~~~~v~v~~S~Ip~~G~GlFA~~~I~kG~~I~~Y~G~~   56 (171)
T d2f69a2          19 ESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVR   56 (171)
T ss_dssp             HHTTEEEEECSSTTCCEEEEESSCBCTTCEEEEECCEE
T ss_pred             ccceEEEEeeccCCCceehccCcccCCCCEEEEeeeEE
Confidence            3456788877  57899999999999999998655543

>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: HIT zinc finger
domain: Zinc finger HIT domain containing protein 2, ZNHIT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.32  E-value=0.09  Score=31.95  Aligned_cols=30  Identities=33%  Similarity=0.615  Sum_probs=24.1

Q ss_pred             ccccCCCCCCCcccCCCCCceeecChHHHhHh
Q psy10008        123 NCNHCCTSISAPIPCNECILAVYCSESCRREA  154 (214)
Q Consensus       123 ~C~~C~~~~~~~~~C~~C~~~~YCS~~C~~~a  154 (214)
                      .|.-|... ...++|++| .+.|||-.|-+.+
T Consensus         9 lC~vC~~~-~~KY~CP~C-~~~yCSL~CyK~H   38 (46)
T d1x4sa1           9 FCPAGEVQ-PARYTCPRC-NAPYCSLRCYRTH   38 (46)
T ss_dssp             SSCTTCCE-EECEECTTT-CCEESSHHHHHHH
T ss_pred             cChhhhCc-cccccCCCC-CCceechHHHhhh
Confidence            56777654 357899999 8999999998764