Psyllid ID: psy10015

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFFSKGNSGWYIPCLKSPSQTKLLYSLFNILLK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHcccccEEEEEccccccEEEEEEEEcccccccccEEEEEEEEcccccccccccccccccccHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHccccccEEEccccHcccEEEHHHEccccccccccEEEEEEEEccccccccccccccccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAGSALRRLMAEYKQltinppegiiagpvneenffEWEALITGNKLYEWMPFALNLCYFfskgnsgwyipclkspsqtKLLYSLFNILLK
Flexible Loop (DISEMBL)
MAGSALRRLMAEYKQltinppegiiAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFFSKGNSGWYIPCLKSPSQTKLLYSLFNILLK
Low Complexity Region (SEG)
MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFFSKGNSGWYIPCLKSPSQTKLLYSLFNILLK
Disordered region (IsUnstruct)
*********MAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFFSKGNSGWYIPCLKSPSQTKLLYSLFNILL*
Disordered Region (DISOPRED)
****ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFFSKGNSGWYIPCLKSPSQTKLLYSLFNILLK
Disordered Region (DISEMBL)
MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFFSKGNSGWYIPCLKSPSQTKLLYSLFNILLK
Disordered Region (DISPRO)
***SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFFSKGNSGWYIPCLKSPSQTKLLYSLFNILLK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFFSKGNSGWYIPCLKSPSQTKLLYSLFNILLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	90	2.2.26 [Sep-21-2011]
Q17QG5	165	Ubiquitin-conjugating enz	yes	N/A	0.477	0.260	0.860	4e-16
Q5RF84	165	Ubiquitin-conjugating enz	yes	N/A	0.477	0.260	0.860	4e-16
P60605	165	Ubiquitin-conjugating enz	yes	N/A	0.477	0.260	0.860	4e-16
P60604	165	Ubiquitin-conjugating enz	yes	N/A	0.477	0.260	0.860	4e-16
O00102	166	Ubiquitin-conjugating enz	yes	N/A	0.433	0.234	0.666	6e-09
Q02159	165	Ubiquitin-conjugating enz	yes	N/A	0.477	0.260	0.465	6e-05
Q4WLA7	151	Ubiquitin-conjugating enz	no	N/A	0.466	0.278	0.441	0.0002
Q6C093	151	Ubiquitin-conjugating enz	no	N/A	0.466	0.278	0.418	0.0003
Q96UP5	151	Ubiquitin-conjugating enz	no	N/A	0.466	0.278	0.441	0.0003
Q553F3	151	Ubiquitin-conjugating enz	yes	N/A	0.633	0.377	0.383	0.0003

>sp|Q17QG5|UB2G2_BOVIN Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 42/43 (97%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          MAG+AL+RLMAEYKQLT+NPPEGI+AGP+NEENFFEWEALI G
Sbjct: 1  MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMG 43

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-linked polyubiquitination. Involved in endoplasmic reticulum-associated degradation (ERAD).
Bos taurus (taxid: 9913)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 9

>sp|Q5RF84|UB2G2_PONAB Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 42/43 (97%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          MAG+AL+RLMAEYKQLT+NPPEGI+AGP+NEENFFEWEALI G
Sbjct: 1  MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMG 43

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-linked polyubiquitination. Involved in endoplasmic reticulum-associated degradation (ERAD).

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P60605|UB2G2_MOUSE Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 42/43 (97%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          MAG+AL+RLMAEYKQLT+NPPEGI+AGP+NEENFFEWEALI G
Sbjct: 1  MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMG 43

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-linked polyubiquitination. Involved in endoplasmic reticulum-associated degradation (ERAD).

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P60604|UB2G2_HUMAN Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 42/43 (97%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          MAG+AL+RLMAEYKQLT+NPPEGI+AGP+NEENFFEWEALI G
Sbjct: 1  MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMG 43

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-linked polyubiquitination. Involved in endoplasmic reticulum-associated degradation (ERAD).

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|O00102|UBC7_SCHPO Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubc7 PE=2 SV=2

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 31/39 (79%)

Query: 5  ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          ALRRLM EYK+LT N P+GI AGP NE++FF W+ LI G
Sbjct: 6  ALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQG 44

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the doa10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains, and of the hrd1 ubiquitin ligase complex, which is part of the ERAD-L and ERAD-M pathways responsible for the rapid degradation of soluble lumenal and membrane proteins with misfolded lumenal domains (ERAD-L), or ER-membrane proteins with misfolded transmembrane domains (ERAD-M) (By similarity). Together with hrd1, required for the degradation of the transcription factor sre1 precursor in the absence of its binding partner scp1. Has a role in the formation of chromatin structures that influence the localization of transcriptional silencing factors.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q02159|UBC7_YEAST Ubiquitin-conjugating enzyme E2 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBC7 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 29/43 (67%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          M+ +A +RL+ E +QL  + P GI+AGP +E N F W+ LI G
Sbjct: 1  MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQG 43

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the DOA10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains, and of the HRD1 ubiquitin ligase complex, which is part of the ERAD-L and ERAD-M pathways responsible for the rapid degradation of soluble lumenal and membrane proteins with misfolded lumenal domains (ERAD-L), or ER-membrane proteins with misfolded transmembrane domains (ERAD-M). Involved in resistance to cadmium poisoning.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q4WLA7|UBC2_ASPFU Ubiquitin-conjugating enzyme E2 2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=ubc2 PE=3 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          M+ SA RRLM ++K++  +PP G+ A PV  +N   W A+I G
Sbjct: 1  MSTSARRRLMRDFKRMQTDPPAGVSASPV-ADNVMTWNAVIIG 42

Catalyzes the covalent attachment of ubiquitin to other proteins. Plays a role in transcription regulation by catalyzing the monoubiquitination of histone H2B to form H2BK123ub1. H2BK123ub1 gives a specific tag for epigenetic transcriptional activation and is also a prerequisite for H3K4me and H3K79me formation. Also involved in postreplication repair of UV-damaged DNA, in N-end rule-dependent protein degradation and in sporulation.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q6C093|UBC2_YARLI Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=UBC2 PE=3 SV=1

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          M+ +A RRLM ++K++  +PP+G+ A PV  +N   W A+I G
Sbjct: 1  MSTTARRRLMRDFKRMQQDPPQGVSASPV-ADNVLTWNAVIIG 42

Catalyzes the covalent attachment of ubiquitin to other proteins. Plays a role in transcription regulation by catalyzing the monoubiquitination of histone H2B to form H2BK123ub1. H2BK123ub1 gives a specific tag for epigenetic transcriptional activation and is also a prerequisite for H3K4me and H3K79me formation. Also involved in postreplication repair of UV-damaged DNA, in N-end rule-dependent protein degradation and in sporulation.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q96UP5|UBC2_EMENI Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=uvsJ PE=3 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          M+ SA RRLM ++K++  +PP G+ A PV  +N   W A+I G
Sbjct: 1  MSTSARRRLMRDFKRMQTDPPAGVSASPV-ADNVMTWNAVIIG 42

Catalyzes the covalent attachment of ubiquitin to other proteins. Plays a role in transcription regulation by catalyzing the monoubiquitination of histone H2B to form H2BK123ub1. H2BK123ub1 gives a specific tag for epigenetic transcriptional activation and is also a prerequisite for H3K4me and H3K79me formation. Also involved in postreplication repair of UV-damaged DNA, in N-end rule-dependent protein degradation and in sporulation.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q553F3|UBC2_DICDI Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 3/60 (5%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNLCY 58
          M+ +A RRLM ++K+L  +PP GI   P+ E N   W+A+I G  + ++E   F L+L +
Sbjct: 1  MSTAARRRLMRDFKRLQSDPPAGISGAPL-ENNILMWQAVIFGPDDSIWEGATFKLSLQF 59

Catalyzes the covalent attachment of ubiquitin to other proteins.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
357605444	169	putative ubiquitin-conjugating enzyme E2	0.477	0.254	0.976	3e-16
72079387	165	PREDICTED: ubiquitin-conjugating enzyme	0.477	0.260	0.953	3e-16
328793847	171	PREDICTED: ubiquitin-conjugating enzyme	0.477	0.251	0.953	3e-16
350408696	171	PREDICTED: ubiquitin-conjugating enzyme	0.477	0.251	0.953	3e-16
322780430	170	hypothetical protein SINV_08635 [Solenop	0.477	0.252	0.953	3e-16
307205475	167	Ubiquitin-conjugating enzyme E2 G2 [Harp	0.477	0.257	0.953	4e-16
307171870	166	Ubiquitin-conjugating enzyme E2 G2 [Camp	0.477	0.259	0.953	4e-16
340728561	167	PREDICTED: ubiquitin-conjugating enzyme	0.477	0.257	0.953	4e-16
389611884	168	courtless [Papilio xuthus]	0.477	0.255	0.953	4e-16
91078920	167	PREDICTED: similar to ubiquitin-conjugat	0.477	0.257	0.953	5e-16

>gi|357605444|gb|EHJ64632.1| putative ubiquitin-conjugating enzyme E2 g [Danaus plexippus]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/43 (97%), Positives = 43/43 (100%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          MAGSALRRLMAEYKQLT+NPPEGIIAGPVNEENFFEWEALITG
Sbjct: 1  MAGSALRRLMAEYKQLTLNPPEGIIAGPVNEENFFEWEALITG 43

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|72079387|ref|XP_790704.1| PREDICTED: ubiquitin-conjugating enzyme E2 G2-like [Strongylocentrotus purpuratus]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/43 (95%), Positives = 43/43 (100%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          MAGSAL+RLMAEYKQLT+NPPEGIIAGPVNEENFFEWEALITG
Sbjct: 1  MAGSALKRLMAEYKQLTVNPPEGIIAGPVNEENFFEWEALITG 43

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|328793847|ref|XP_625157.2| PREDICTED: ubiquitin-conjugating enzyme E2 G2 [Apis mellifera]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/43 (95%), Positives = 43/43 (100%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          MAGSALRRLMAEYKQLT+NPPEGIIAGP+NEENFFEWEALITG
Sbjct: 5  MAGSALRRLMAEYKQLTLNPPEGIIAGPINEENFFEWEALITG 47

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350408696|ref|XP_003488480.1| PREDICTED: ubiquitin-conjugating enzyme E2 G2-like [Bombus impatiens]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/43 (95%), Positives = 43/43 (100%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          MAGSALRRLMAEYKQLT+NPPEGIIAGP+NEENFFEWEALITG
Sbjct: 5  MAGSALRRLMAEYKQLTLNPPEGIIAGPINEENFFEWEALITG 47

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322780430|gb|EFZ09918.1| hypothetical protein SINV_08635 [Solenopsis invicta]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/43 (95%), Positives = 43/43 (100%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          MAGSALRRLMAEYKQLT+NPPEGIIAGP+NEENFFEWEALITG
Sbjct: 4  MAGSALRRLMAEYKQLTLNPPEGIIAGPINEENFFEWEALITG 46

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205475|gb|EFN83797.1| Ubiquitin-conjugating enzyme E2 G2 [Harpegnathos saltator]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/43 (95%), Positives = 43/43 (100%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          MAGSALRRLMAEYKQLT+NPPEGIIAGP+NEENFFEWEALITG
Sbjct: 1  MAGSALRRLMAEYKQLTLNPPEGIIAGPINEENFFEWEALITG 43

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307171870|gb|EFN63522.1| Ubiquitin-conjugating enzyme E2 G2 [Camponotus floridanus]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/43 (95%), Positives = 43/43 (100%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          MAGSALRRLMAEYKQLT+NPPEGIIAGP+NEENFFEWEALITG
Sbjct: 1  MAGSALRRLMAEYKQLTLNPPEGIIAGPINEENFFEWEALITG 43

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728561|ref|XP_003402589.1| PREDICTED: ubiquitin-conjugating enzyme E2 G2-like [Bombus terrestris] gi|332020401|gb|EGI60821.1| Ubiquitin-conjugating enzyme E2 G2 [Acromyrmex echinatior]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/43 (95%), Positives = 43/43 (100%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          MAGSALRRLMAEYKQLT+NPPEGIIAGP+NEENFFEWEALITG
Sbjct: 1  MAGSALRRLMAEYKQLTLNPPEGIIAGPINEENFFEWEALITG 43

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389611884|dbj|BAM19498.1| courtless [Papilio xuthus]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/43 (95%), Positives = 43/43 (100%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          MAGSALRRLMAEYKQLT+NPPEGIIAGP+NEENFFEWEALITG
Sbjct: 1  MAGSALRRLMAEYKQLTLNPPEGIIAGPINEENFFEWEALITG 43

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078920|ref|XP_973689.1| PREDICTED: similar to ubiquitin-conjugating enzyme E2 g [Tribolium castaneum] gi|270004881|gb|EFA01329.1| courtless [Tribolium castaneum]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/43 (95%), Positives = 43/43 (100%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          MAGSALRRLMAEYKQLT+NPPEGIIAGP+NEENFFEWEALITG
Sbjct: 1  MAGSALRRLMAEYKQLTLNPPEGIIAGPINEENFFEWEALITG 43

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
ZFIN|ZDB-GENE-050417-288	165	ube2g2 "ubiquitin-conjugating	0.477	0.260	0.883	6.7e-17
UNIPROTKB|E1C9E7	165	UBE2G2 "Uncharacterized protei	0.477	0.260	0.860	1.4e-16
UNIPROTKB|Q17QG5	165	UBE2G2 "Ubiquitin-conjugating	0.477	0.260	0.860	1.4e-16
UNIPROTKB|J9NY70	165	UBE2G2 "Uncharacterized protei	0.477	0.260	0.860	1.4e-16
UNIPROTKB|F8WDB1	99	UBE2G2 "Ubiquitin-conjugating	0.477	0.434	0.860	1.4e-16
UNIPROTKB|P60604	165	UBE2G2 "Ubiquitin-conjugating	0.477	0.260	0.860	1.4e-16
UNIPROTKB|Q5RF84	165	UBE2G2 "Ubiquitin-conjugating	0.477	0.260	0.860	1.4e-16
MGI|MGI:1343188	165	Ube2g2 "ubiquitin-conjugating	0.477	0.260	0.860	1.4e-16
RGD|1304860	241	Ube2g2 "ubiquitin-conjugating	0.477	0.178	0.860	1.4e-16
FB|FBgn0015374	200	crl "courtless" [Drosophila me	0.477	0.215	0.837	3.7e-16

ZFIN|ZDB-GENE-050417-288 ube2g2 "ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast)" [Danio rerio (taxid:7955)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 38/43 (88%), Positives = 42/43 (97%)

Query:     1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
             MAG+AL+RLMAEYKQLT+NPPEGI+AGPVNEENFFEWEALI G
Sbjct:     1 MAGTALKRLMAEYKQLTLNPPEGIVAGPVNEENFFEWEALIMG 43

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|E1C9E7 UBE2G2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 37/43 (86%), Positives = 42/43 (97%)

Query:     1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
             MAG+AL+RLMAEYKQLT+NPPEGI+AGP+NEENFFEWEALI G
Sbjct:     1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMG 43

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

UNIPROTKB|Q17QG5 UBE2G2 "Ubiquitin-conjugating enzyme E2 G2" [Bos taurus (taxid:9913)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 37/43 (86%), Positives = 42/43 (97%)

Query:     1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
             MAG+AL+RLMAEYKQLT+NPPEGI+AGP+NEENFFEWEALI G
Sbjct:     1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMG 43

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=ISS

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0070936 "protein K48-linked ubiquitination" evidence=ISS

GO:0005829 "cytosol" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|J9NY70 UBE2G2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 37/43 (86%), Positives = 42/43 (97%)

Query:     1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
             MAG+AL+RLMAEYKQLT+NPPEGI+AGP+NEENFFEWEALI G
Sbjct:     1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMG 43

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|F8WDB1 UBE2G2 "Ubiquitin-conjugating enzyme E2 G2" [Homo sapiens (taxid:9606)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 37/43 (86%), Positives = 42/43 (97%)

Query:     1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
             MAG+AL+RLMAEYKQLT+NPPEGI+AGP+NEENFFEWEALI G
Sbjct:     1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMG 43

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|P60604 UBE2G2 "Ubiquitin-conjugating enzyme E2 G2" [Homo sapiens (taxid:9606)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 37/43 (86%), Positives = 42/43 (97%)

Query:     1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
             MAG+AL+RLMAEYKQLT+NPPEGI+AGP+NEENFFEWEALI G
Sbjct:     1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMG 43

GO:0005524 "ATP binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070936 "protein K48-linked ubiquitination" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IMP

GO:0030433 "ER-associated protein catabolic process" evidence=IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

UNIPROTKB|Q5RF84 UBE2G2 "Ubiquitin-conjugating enzyme E2 G2" [Pongo abelii (taxid:9601)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 37/43 (86%), Positives = 42/43 (97%)

Query:     1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
             MAG+AL+RLMAEYKQLT+NPPEGI+AGP+NEENFFEWEALI G
Sbjct:     1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMG 43

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=ISS

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0070936 "protein K48-linked ubiquitination" evidence=ISS

MGI|MGI:1343188 Ube2g2 "ubiquitin-conjugating enzyme E2G 2" [Mus musculus (taxid:10090)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 37/43 (86%), Positives = 42/43 (97%)

Query:     1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
             MAG+AL+RLMAEYKQLT+NPPEGI+AGP+NEENFFEWEALI G
Sbjct:     1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMG 43

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=ISO

GO:0030433 "ER-associated protein catabolic process" evidence=ISO;IDA

GO:0070936 "protein K48-linked ubiquitination" evidence=ISO

RGD|1304860 Ube2g2 "ubiquitin-conjugating enzyme E2G 2" [Rattus norvegicus (taxid:10116)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 37/43 (86%), Positives = 42/43 (97%)

Query:     1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
             MAG+AL+RLMAEYKQLT+NPPEGI+AGP+NEENFFEWEALI G
Sbjct:     1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMG 43

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=ISO

GO:0030433 "ER-associated protein catabolic process" evidence=ISO

GO:0070936 "protein K48-linked ubiquitination" evidence=ISO

FB|FBgn0015374 crl "courtless" [Drosophila melanogaster (taxid:7227)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 36/43 (83%), Positives = 42/43 (97%)

Query:     1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
             MAGSALRRLMAEYKQLT++PPEGI+AGP++E+NFFEWEALI G
Sbjct:     1 MAGSALRRLMAEYKQLTLDPPEGIVAGPISEDNFFEWEALIAG 43

GO:0007283 "spermatogenesis" evidence=IMP;TAS

GO:0008049 "male courtship behavior" evidence=IMP;TAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;NAS

GO:0007140 "male meiosis" evidence=IMP

GO:0007619 "courtship behavior" evidence=NAS;TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O00102	UBC7_SCHPO	6, ., 3, ., 2, ., 1, 9	0.6666	0.4333	0.2349	yes	N/A
Q5RF84	UB2G2_PONAB	6, ., 3, ., 2, ., 1, 9	0.8604	0.4777	0.2606	yes	N/A
Q17QG5	UB2G2_BOVIN	6, ., 3, ., 2, ., 1, 9	0.8604	0.4777	0.2606	yes	N/A
P60604	UB2G2_HUMAN	6, ., 3, ., 2, ., 1, 9	0.8604	0.4777	0.2606	yes	N/A
P60605	UB2G2_MOUSE	6, ., 3, ., 2, ., 1, 9	0.8604	0.4777	0.2606	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	90
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	2e-11
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	4e-08
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	3e-07
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	3e-07

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 55.7 bits (135), Expect = 2e-11
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
           + SAL+RL+ E K+L  +PP GI AGPV+++N F WEA ITG
Sbjct: 2  SSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITG 44

Length = 153

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score = 46.8 bits (112), Expect = 4e-08
 Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 7  RRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          +RL  E K L  +PP GI A PV EEN  EW   I G
Sbjct: 2  KRLQKELKDLKKDPPSGISAEPV-EENLLEWHGTIRG 37

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score = 44.5 bits (106), Expect = 3e-07
 Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 8  RLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYE 48
          RL  E K+L  +PP GI A PV ++N FEWE  I G +   YE
Sbjct: 1  RLQKELKELLKDPPPGISAFPV-DDNLFEWEVTIIGPEGTPYE 42

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score = 44.6 bits (106), Expect = 3e-07
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 8  RLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYE 48
          RL+ E K+L  +PP G  A PV++EN  EW   I G     YE
Sbjct: 1  RLLKELKELRKDPPPGFTAYPVDDENLLEWTGTIVGPPGTPYE 43

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	90
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	99.82
KOG0419|consensus	152		99.79
KOG0417|consensus	148		99.77
KOG0426|consensus	165		99.75
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	99.72
PLN00172	147	ubiquitin conjugating enzyme; Provisional	99.7
KOG0894|consensus	244		99.67
KOG0425|consensus	171		99.65
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	99.59
KOG0421|consensus	175		99.55
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	99.53
KOG0418|consensus	200		99.5
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	99.47
KOG0424|consensus	158		99.45
KOG0427|consensus	161		99.28
KOG0422|consensus	153		99.24
KOG0428|consensus	314		99.22
KOG0423|consensus	223		98.9
KOG0416|consensus	189		98.65
KOG0429|consensus	258		97.83
KOG0895|consensus	1101		97.66
KOG0420|consensus	184		97.58
KOG0895|consensus	1101		96.87
KOG0896|consensus	138		96.53

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=3.8e-20  Score=124.53  Aligned_cols=68  Identities=46%  Similarity=0.742  Sum_probs=58.7

Q ss_pred             Cch-HHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccC
Q psy10015          1 MAG-SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIP   70 (90)
Q Consensus         1 Ms~-~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~   70 (90)
                      |++ .|.+||+||+++|+++++++|++.+.+++|+++|+++|.||+  +||||.|++.|  .||.+|      +.|.++
T Consensus         1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l--~fP~~YP~~PPkv~F~t~   77 (153)
T COG5078           1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTL--EFPEDYPFKPPKVRFTTK   77 (153)
T ss_pred             CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEE--ECCCCCCCCCCeeeeccC
Confidence            444 489999999999999999999999986669999999999999  99999999887  666655      566666

>KOG0419|consensus

Probab=99.79  E-value=1.1e-19  Score=119.12  Aligned_cols=61  Identities=44%  Similarity=0.745  Sum_probs=56.6

Q ss_pred             CchHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC
Q psy10015          1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN   64 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~   64 (90)
                      ||+.|.+||+|++++|+.+++.||++.|. ++|++.|.+.|.||+  ||+||+|+|.+  .|+++|
T Consensus         1 MstpArrrLmrDfkrlqedpp~gisa~P~-~~niM~W~a~I~Gp~~tp~e~gtFkLtl--~FteeY   63 (152)
T KOG0419|consen    1 MSTPARRRLMRDFKRLQEDPPAGISAAPV-ENNIMEWNAVIFGPQDTPFEGGTFKLTL--EFTEEY   63 (152)
T ss_pred             CCchHHHHHHHHHHHhhcCCCCCccCCCC-ccceeeeeeeEEcCCCCCcCCceEEEEE--Eccccc
Confidence            89999999999999999999999999997 679999999999999  99999998877  666665

>KOG0417|consensus

Probab=99.77  E-value=6.2e-19  Score=117.42  Aligned_cols=72  Identities=32%  Similarity=0.578  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEE----EecCCCcccccCccCCCchh
Q psy10015          5 ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCY----FFSKGNSGWYIPCLKSPSQT   78 (90)
Q Consensus         5 a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i----~f~~~~~~~~~~~~~~~~~~   78 (90)
                      +.+||.||+++|+++++++|++.+. ++|+++|+++|.||.  |||||.|+++|++    +|.+++|.|.|+ +++|+..
T Consensus         2 a~~RI~kE~~~l~~dp~~~~~~~~~-~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~Tk-IyHPNI~   79 (148)
T KOG0417|consen    2 ASKRIIKELQDLLRDPPPGCSAGPV-GDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTK-IYHPNID   79 (148)
T ss_pred             cHHHHHHHHHHHhcCCCCCCccCCC-CCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecc-cccCCcC
Confidence            4579999999999999999999984 789999999999999  9999999999854    455556788888 4555543

>KOG0426|consensus

Probab=99.75  E-value=2.4e-18  Score=113.19  Aligned_cols=76  Identities=55%  Similarity=0.945  Sum_probs=66.7

Q ss_pred             CchHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCCcccccCccCCCchh
Q psy10015          1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGNSGWYIPCLKSPSQT   78 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~~~~~~~~~~~~~~~   78 (90)
                      |+..|.|||++|+++|..++++||.++|.++||.++|.+.|.||+  +|+||.|-.++  .||.+|       +.+|+--
T Consensus         1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l--~FP~DY-------PLsPPkm   71 (165)
T KOG0426|consen    1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARL--SFPLDY-------PLSPPKM   71 (165)
T ss_pred             CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceee--ecCCCC-------CCCCCce
Confidence            788899999999999999999999999999999999999999999  89999998876  899998       4555555


Q ss_pred             hhHhhhh
Q psy10015         79 KLLYSLF   85 (90)
Q Consensus        79 ~~~~~~~   85 (90)
                      +|.-++|
T Consensus        72 ~Ftc~~f   78 (165)
T KOG0426|consen   72 RFTCEMF   78 (165)
T ss_pred             eeecccc
Confidence            5555444

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=99.72  E-value=1.6e-17  Score=111.52  Aligned_cols=65  Identities=26%  Similarity=0.428  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCcc
Q psy10015          5 ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCL   72 (90)
Q Consensus         5 a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~   72 (90)
                      +++||+||+++++++++++|.+.+. ++|+++|+++|.||+  ||+||.|+++|  .||++|      +.|.|+.+
T Consensus         3 ~~kRl~~E~~~l~~~~~~~i~~~~~-~~d~~~w~~~i~GP~~tpY~gg~f~~~i--~~p~~YP~~pP~v~F~t~i~   75 (152)
T PTZ00390          3 ISKRIEKETQNLANDPPPGIKAEPD-PGNYRHFKILMEGPDGTPYEGGYYKLEL--FLPEQYPMEPPKVRFLTKIY   75 (152)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEEC-CCCccEEEEEEEcCCCCCCcCcEEEEEE--ECccccCCCCCEEEEecCCe
Confidence            5799999999999999999999985 679999999999998  89999998887  555554      56767643

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=99.70  E-value=4.7e-17  Score=108.66  Aligned_cols=65  Identities=32%  Similarity=0.530  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCcc
Q psy10015          5 ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCL   72 (90)
Q Consensus         5 a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~   72 (90)
                      |.+||+||+++|++++++++++.+. ++|+++|++.|.||+  ||+||.|+++|  .||++|      +.|.|+.+
T Consensus         2 a~~Rl~kE~~~l~~~~~~~~~~~~~-~~nl~~w~~~i~GP~~tpyegg~f~~~i--~fp~~YP~~pP~v~f~t~i~   74 (147)
T PLN00172          2 ATKRIQKEHKDLLKDPPSNCSAGPS-DENLFRWTASIIGPSDSPYAGGVFFLSI--LFPPDYPFKPPKVQFTTKIY   74 (147)
T ss_pred             hHHHHHHHHHHHHhCCCCCeEEEEC-CCChheEEEEEECCCCCCCCCCEEEEEE--ECCcccCCCCCEEEEecCcc
Confidence            4699999999999999999999985 679999999999999  89999998887  566554      56667643

>KOG0894|consensus

Probab=99.67  E-value=7.2e-17  Score=113.21  Aligned_cols=83  Identities=29%  Similarity=0.437  Sum_probs=72.2

Q ss_pred             Cc-hHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCCc------ccccCc
Q psy10015          1 MA-GSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGNS------GWYIPC   71 (90)
Q Consensus         1 Ms-~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~~------~~~~~~   71 (90)
                      |+ ..|.+||+||++.|.++|.+.|.+.| .++|+.+|+..|.||+  ||+||+|+-.+  .||+++.      .+.||.
T Consensus         1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P-~p~nILEWHYvl~GpedTPy~GG~YhGkl--~FP~eyP~KPPaI~MiTPN   77 (244)
T KOG0894|consen    1 MASKAAVKRLQKEYRALCKDPVPYIVARP-NPNNILEWHYVLRGPEDTPYYGGYYHGKL--IFPPEYPFKPPAITMITPN   77 (244)
T ss_pred             CcchHHHHHHHHHHHHHHhCCchhhccCC-CccceeeeEEEeeCCCCCCccCceeeeEE--eCCCCCCCCCCeeEEECCC
Confidence            44 37899999999999999999999999 5889999999999999  99999999887  6776652      556999


Q ss_pred             cCCCchhhhHhhhhh
Q psy10015         72 LKSPSQTKLLYSLFN   86 (90)
Q Consensus        72 ~~~~~~~~~~~~~~~   86 (90)
                      ..+-+++|+|-|+..
T Consensus        78 GRFktntRLCLSiSD   92 (244)
T KOG0894|consen   78 GRFKTNTRLCLSISD   92 (244)
T ss_pred             CceecCceEEEeccc
Confidence            999999999988653

>KOG0425|consensus

Probab=99.65  E-value=3.9e-16  Score=104.89  Aligned_cols=73  Identities=30%  Similarity=0.493  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCCcccccCccCCCchhhhH
Q psy10015          4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGNSGWYIPCLKSPSQTKLL   81 (90)
Q Consensus         4 ~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~~~~~~~~~~~~~~~~~~   81 (90)
                      .+...|+++|++|++.+.++++++.+++.|+++|.+.|.||+  .|+||.|+..+  .||.+|       +.+|+..||+
T Consensus         5 ~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m--~FP~dY-------P~sPP~~rF~   75 (171)
T KOG0425|consen    5 QASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHM--KFPQDY-------PLSPPTFRFT   75 (171)
T ss_pred             hhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEE--eCcccC-------CCCCCceeee
Confidence            467899999999999999999999998889999999999998  79999999987  999999       7999999999


Q ss_pred             hhhh
Q psy10015         82 YSLF   85 (90)
Q Consensus        82 ~~~~   85 (90)
                      +.||
T Consensus        76 s~mw   79 (171)
T KOG0425|consen   76 SKMW   79 (171)
T ss_pred             hhhc
Confidence            9987

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=99.59  E-value=2.2e-15  Score=98.98  Aligned_cols=64  Identities=34%  Similarity=0.611  Sum_probs=53.6

Q ss_pred             HHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          8 RLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         8 RL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      ||++|+++++++++.++.+.+.+++|+.+|++.|.||+  +|+||.|+++|  .||++|      +.|.|+.+|
T Consensus         1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i--~~p~~YP~~pP~v~f~t~i~H   72 (140)
T PF00179_consen    1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRI--SFPPDYPFSPPKVRFLTPIFH   72 (140)
T ss_dssp             HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEE--EETTTTTTS--EEEESSS-SB
T ss_pred             CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceecccccccc--ccccccccccccccccccccc
Confidence            89999999999999999999875459999999999977  99999998887  666664      466676443

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>KOG0421|consensus

Probab=99.55  E-value=1.3e-14  Score=96.65  Aligned_cols=68  Identities=34%  Similarity=0.633  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCC------CcccccCccCC
Q psy10015          4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKG------NSGWYIPCLKS   74 (90)
Q Consensus         4 ~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~------~~~~~~~~~~~   74 (90)
                      ...+||++||..|.....+||++.|. +||++.|.++|+||.  +|+|-.|++++  .||.+      .|.|.|||+|+
T Consensus        29 ~V~KRLq~ELm~Lmms~~~gISAFP~-~dnlf~WvGtItGp~dTvyegl~yklSl--~Fp~~YPy~pP~vkFltpc~HP  104 (175)
T KOG0421|consen   29 SVTKRLQSELMGLMMSNTPGISAFPE-SDNLFKWVGTITGPKDTVYEGLKYKLSL--SFPNNYPYKPPTVKFLTPCFHP  104 (175)
T ss_pred             hHHHHHHHHHHHHHhcCCCCcccCcC-cCceeEEeeEeeCCCCccccCcEEEEEE--ecCCCCCCCCCeeEeeccccCC
Confidence            46799999999999999999999995 679999999999999  89999998887  66655      46888888874

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=99.53  E-value=2.6e-14  Score=94.05  Aligned_cols=55  Identities=44%  Similarity=0.715  Sum_probs=49.0

Q ss_pred             HHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC
Q psy10015          7 RRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN   64 (90)
Q Consensus         7 rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~   64 (90)
                      +||++|++++++++++++.+.+. ++|+++|+++|.||+  +|+||.|++.+  .||+++
T Consensus         2 ~Rl~~E~~~l~~~~~~~~~v~~~-~~~~~~w~~~i~g~~~t~y~g~~~~~~~--~~p~~y   58 (141)
T cd00195           2 KRLQKELKDLKKDPPSGISAEPV-EENLLEWHGTIRGPPDTPYEGGIFKLDI--EFPEDY   58 (141)
T ss_pred             chHHHHHHHHHhCCCCCeEEEEC-CCChhEEEEEEecCCCCCccCCEEEEEE--ECCCcc
Confidence            79999999999999999999985 569999999999996  89999998876  566665

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>KOG0418|consensus

Probab=99.50  E-value=4e-14  Score=97.54  Aligned_cols=68  Identities=31%  Similarity=0.405  Sum_probs=57.0

Q ss_pred             CchHHHHHHHHHHHHhhhCC---CCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEE----EecCCCcccccC
Q psy10015          1 MAGSALRRLMAEYKQLTINP---PEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCY----FFSKGNSGWYIP   70 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~---~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i----~f~~~~~~~~~~   70 (90)
                      ||. +.+||+||.+++.+++   ..+|.+..++ +|+.+.++.|.||+  |||||.|.++|++    +|.+++|.|.|-
T Consensus         1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn-~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~Tk   77 (200)
T KOG0418|consen    1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVN-ENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITK   77 (200)
T ss_pred             Ccc-HHHHHHHHHHHhccChhhhhcceEEEEcc-CChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeee
Confidence            777 7899999999999998   6889999984 69999999999999  9999999998854    444555555554

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=99.47  E-value=1.2e-13  Score=91.27  Aligned_cols=65  Identities=35%  Similarity=0.585  Sum_probs=53.6

Q ss_pred             HHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          7 RRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         7 rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      +||++|++++++++++++.+.+.+++|+++|++.|.||+  +|+||.|.+.+  .||+++      +.|.+|++|
T Consensus         1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l--~~p~~yP~~pP~v~f~~~i~H   73 (145)
T smart00212        1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTI--EFPPDYPFKPPKVKFITKIYH   73 (145)
T ss_pred             ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEE--ECCcccCCCCCEEEEeCCceE
Confidence            599999999999999999998865459999999999998  89999997766  666654      456666443

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0424|consensus

Probab=99.45  E-value=3.2e-13  Score=89.80  Aligned_cols=74  Identities=34%  Similarity=0.502  Sum_probs=62.3

Q ss_pred             CchHHHHHHHHHHHHhhhCCCCCEEEeecCC----CCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccc
Q psy10015          1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNE----ENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWY   68 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~~~----~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~   68 (90)
                      ||+.+..||+.|-+.+.++.+-|+.+.|+..    .|++.|.++|.||.  +||||.|.+.+  .||+++      +.|.
T Consensus         1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v--~F~~dyP~~PPkckF~   78 (158)
T KOG0424|consen    1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTV--NFPDDYPSSPPKCKFK   78 (158)
T ss_pred             CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEE--eCCccCCCCCCccccC
Confidence            8889999999999999999999999988642    47999999999999  89999998887  666554      5677


Q ss_pred             cCccCCCch
Q psy10015         69 IPCLKSPSQ   77 (90)
Q Consensus        69 ~~~~~~~~~   77 (90)
                      +| +++|++
T Consensus        79 ~p-l~HPNV   86 (158)
T KOG0424|consen   79 PP-LFHPNV   86 (158)
T ss_pred             CC-CcCCCc
Confidence            77 666654

>KOG0427|consensus

Probab=99.28  E-value=1.2e-11  Score=81.42  Aligned_cols=74  Identities=23%  Similarity=0.364  Sum_probs=59.8

Q ss_pred             CchHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEE----EecCCCcccccCccCC
Q psy10015          1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCY----FFSKGNSGWYIPCLKS   74 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i----~f~~~~~~~~~~~~~~   74 (90)
                      |+..|.+||+|||.+++.+++.|+....  .||+..|.+.+.|.+  .|+|+.|.|.+++    +|..++|-|.-|++.+
T Consensus        12 ls~~at~RLqKEl~e~q~~pP~G~~~~v--~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~H   89 (161)
T KOG0427|consen   12 LSKIATNRLQKELSEWQNNPPTGFKHRV--TDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLH   89 (161)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcceeec--ccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCC
Confidence            3456889999999999999999999874  469999999999988  7999999888742    3334456777776666


Q ss_pred             Cc
Q psy10015         75 PS   76 (90)
Q Consensus        75 ~~   76 (90)
                      |-
T Consensus        90 PH   91 (161)
T KOG0427|consen   90 PH   91 (161)
T ss_pred             Cc
Confidence            63

>KOG0422|consensus

Probab=99.24  E-value=6.5e-12  Score=83.23  Aligned_cols=70  Identities=27%  Similarity=0.324  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC-CCCCCeEEEEEEEEecCCCcccccCccCCCchhhhHhh
Q psy10015          5 ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK-LYEWMPFALNLCYFFSKGNSGWYIPCLKSPSQTKLLYS   83 (90)
Q Consensus         5 a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~-~Yegg~f~l~i~i~f~~~~~~~~~~~~~~~~~~~~~~~   83 (90)
                      +.+||+|||.+|+++....+.-..++++|+..|++.|.+-. ||.-|.|+++|  +||.+|       ++.|+..+|++.
T Consensus         3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~llipd~ppY~kgaF~l~I--~fp~eY-------PFKPP~i~f~tk   73 (153)
T KOG0422|consen    3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLIPDKPPYNKGAFRLEI--DFPVEY-------PFKPPKIKFKTK   73 (153)
T ss_pred             hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEecCCCCCccCcceEEEe--eCCCCC-------CCCCCeeeeeee
Confidence            57999999999999998877766667889999999998444 89999998887  777777       455555554443

>KOG0428|consensus

Probab=99.22  E-value=1.2e-11  Score=88.68  Aligned_cols=79  Identities=25%  Similarity=0.377  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCCc------ccccCccCC
Q psy10015          3 GSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGNS------GWYIPCLKS   74 (90)
Q Consensus         3 ~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~~------~~~~~~~~~   74 (90)
                      +.+.|||+||.++|+ +|-+.+.+.|. +||+++|+.+|.||.  .++||+|+-+|  .||.+|.      --.||+..+
T Consensus        10 npaVkRlmkEa~El~-~Ptd~yha~pl-EdNlFEWhFtiRGp~dtdFeGGiYHGRI--~lPadYPmKPPs~iLLTpNGRF   85 (314)
T KOG0428|consen   10 NPAVKRLMKEAAELK-DPTDHYHAQPL-EDNLFEWHFTIRGPPDTDFEGGIYHGRI--VLPADYPMKPPSIILLTPNGRF   85 (314)
T ss_pred             CHHHHHHHHHHHHhc-Cchhhhhhccc-hhceeeEEEEeeCCCCCCccCceeeeeE--ecCCCCCCCCCeEEEEcCCCce
Confidence            468899999999998 88888998887 789999999999999  79999999987  7777762      123666665


Q ss_pred             CchhhhHhhhh
Q psy10015         75 PSQTKLLYSLF   85 (90)
Q Consensus        75 ~~~~~~~~~~~   85 (90)
                      -...|-|-|++
T Consensus        86 E~nkKiCLSIS   96 (314)
T KOG0428|consen   86 EVNKKICLSIS   96 (314)
T ss_pred             eeCceEEEEec
Confidence            55555555543

>KOG0423|consensus

Probab=98.90  E-value=5.2e-10  Score=76.80  Aligned_cols=57  Identities=33%  Similarity=0.480  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEE--Eec
Q psy10015          4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCY--FFS   61 (90)
Q Consensus         4 ~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i--~f~   61 (90)
                      ...+.++||++.|..+|++||.+.+ +++|+....+.|.||.  ||++|.|++.+.+  .||
T Consensus        10 ~vik~~~kEl~~l~~~PPdGIKV~~-NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP   70 (223)
T KOG0423|consen   10 NVIKQLAKELKSLDESPPDGIKVVV-NEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFP   70 (223)
T ss_pred             HHHHHHHHHHHhcccCCCCceEEec-ChHHhHHHHhhccCCCCCccccceeeehhhhcCCCC
Confidence            4578999999999999999999988 6789999999999999  9999999988754  455

>KOG0416|consensus

Probab=98.65  E-value=5.8e-08  Score=66.44  Aligned_cols=66  Identities=15%  Similarity=0.217  Sum_probs=49.7

Q ss_pred             CchHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCcc
Q psy10015          1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCL   72 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~   72 (90)
                      ||+ ..||+..++.+|....   ..+..+ ++++.++++.+.||.  +|+||.|++++  ..|.+|      ++|.+-++
T Consensus         1 ms~-~~rRid~Dv~KL~~s~---yeV~~i-nd~m~ef~V~f~GP~ds~YegGvWkv~V--~lPd~YP~KSPSIGFvnKIf   73 (189)
T KOG0416|consen    1 MSS-GKRRIDTDVMKLLMSD---YEVTII-NDGMQEFYVKFHGPKDSPYEGGVWKVRV--ELPDNYPFKSPSIGFVNKIF   73 (189)
T ss_pred             CCC-cccchhhHHHHHHhcC---CeEEEe-cCcccEEEEEeeCCCCCcccCceEEEEE--ECCCCCCCCCCcccceeecc
Confidence            554 4689999999986543   555554 567999999999999  99999998887  556554      46666644


Q ss_pred             C
Q psy10015         73 K   73 (90)
Q Consensus        73 ~   73 (90)
                      |
T Consensus        74 H   74 (189)
T KOG0416|consen   74 H   74 (189)
T ss_pred             C
Confidence            4

>KOG0429|consensus

Probab=97.83  E-value=6.4e-05  Score=53.60  Aligned_cols=66  Identities=20%  Similarity=0.263  Sum_probs=54.0

Q ss_pred             HHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC-CCCCCeEEEEEEE--EecCCC----cccccCccC
Q psy10015          7 RRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK-LYEWMPFALNLCY--FFSKGN----SGWYIPCLK   73 (90)
Q Consensus         7 rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~-~Yegg~f~l~i~i--~f~~~~----~~~~~~~~~   73 (90)
                      --|..|+....+.+.+||.+.| +-.|-..|-+.|.+-. .|.||.|++.|.+  +||++.    +.|.++-+|
T Consensus        22 y~llAEf~lV~~ekL~gIyviP-Syan~l~WFGViFvr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfH   94 (258)
T KOG0429|consen   22 YALLAEFVLVCREKLDGIYVIP-SYANKLLWFGVIFVRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFH   94 (258)
T ss_pred             HHHHHHHHHHHhccCCceEEcc-cccccceEEEEEEEecccccCceEEEEEEcCccCCCcCCCCeEEeeccccc
Confidence            3466778888889999999999 4678999999999888 8999999999987  788663    467677443

>KOG0895|consensus

Probab=97.66  E-value=9.1e-05  Score=61.96  Aligned_cols=58  Identities=28%  Similarity=0.371  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC
Q psy10015          4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN   64 (90)
Q Consensus         4 ~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~   64 (90)
                      ...+|+++|++-+.++.++++.+.+ .+.++...++.|.||+  ||++|.|.++|  +||..|
T Consensus       282 ~~skrv~ke~~llskdlpEgifvrp-~e~RMd~I~alIig~~gtPy~~glf~Fdi--q~P~~y  341 (1101)
T KOG0895|consen  282 NWSKKVAKELKLLSKDLPEGIFVRP-DEGRMDLIKALIIGPDGTPYADGLFLFDI--QFPDTY  341 (1101)
T ss_pred             hhHHHHHHHhhhhcccCCCCccccc-cccccceeeeEEecCCCCCCcCCceeeEe--ecCCCC
Confidence            3568999999999999999999888 4778999999999999  99999998665  888865

>KOG0420|consensus

Probab=97.58  E-value=0.00015  Score=49.90  Aligned_cols=69  Identities=22%  Similarity=0.265  Sum_probs=43.0

Q ss_pred             hHHHHHHHHHHHHhhhCCCCCEEEeecC-CCCce--EEEEEEeccC--CCCCCeEEEEEEEEecCCCcccccCccCCCch
Q psy10015          3 GSALRRLMAEYKQLTINPPEGIIAGPVN-EENFF--EWEALITGNK--LYEWMPFALNLCYFFSKGNSGWYIPCLKSPSQ   77 (90)
Q Consensus         3 ~~a~rRL~kEl~~l~~~~~~~i~~~p~~-~~nl~--~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~~~~~~~~~~~~~~   77 (90)
                      +.++-|+++|..+++  -+++++....+ .+++.  +++.+|. |+  .|+||.|++.+  ++|+.|       +|-|+-
T Consensus        27 s~a~lrl~~di~eln--Lp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~--~v~~~Y-------p~~PPK   94 (184)
T KOG0420|consen   27 SAALLRLKKDILELN--LPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKF--KVPNAY-------PHEPPK   94 (184)
T ss_pred             cHHHHHHHhhhhhcc--CCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEE--ECCCCC-------CCCCCe
Confidence            345667777766664  55555532222 23333  5899998 76  69999998886  777777       455554


Q ss_pred             hhhHhh
Q psy10015         78 TKLLYS   83 (90)
Q Consensus        78 ~~~~~~   83 (90)
                      .|=++.
T Consensus        95 VkCltk  100 (184)
T KOG0420|consen   95 VKCLTK  100 (184)
T ss_pred             eeeeec
Confidence            444333

>KOG0895|consensus

Probab=96.87  E-value=0.00081  Score=56.49  Aligned_cols=55  Identities=24%  Similarity=0.400  Sum_probs=46.1

Q ss_pred             HHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC
Q psy10015          7 RRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN   64 (90)
Q Consensus         7 rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~   64 (90)
                      +..+.|++-|..+.+.+|.+.-. ++.+.-.++.|.||.  ||++|.|.++|  .||.+|
T Consensus       854 ~~~~~~~~~~~~~~~~~~~vr~~-e~r~d~~~~~~~g~~~tpy~~~~f~fd~--~~~~~y  910 (1101)
T KOG0895|consen  854 KKVQTEWKILPLSLPSGIFVRAY-EDRMDLLRAVIVGAAGTPYQDGLFFFDF--QFPQDY  910 (1101)
T ss_pred             HHHHHHHHhhhccCCCceEEEec-hHHHHHHHHHhhCCCCCccccceEEEEe--ecCCCC
Confidence            44556677777788999998874 778888899999999  99999999987  899988

>KOG0896|consensus

Probab=96.53  E-value=0.0052  Score=40.76  Aligned_cols=57  Identities=19%  Similarity=0.325  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHhhhCCCCC-EEEeecCCCC--ceEEEEEEeccC--CCCCCeEEEEEEEEecCCC
Q psy10015          6 LRRLMAEYKQLTINPPEG-IIAGPVNEEN--FFEWEALITGNK--LYEWMPFALNLCYFFSKGN   64 (90)
Q Consensus         6 ~rRL~kEl~~l~~~~~~~-i~~~p~~~~n--l~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~   64 (90)
                      .-||.+|+.+=++.-.++ ++-...+++|  +..|...|.||+  +||+.+|-|+|  +.-++|
T Consensus         7 nfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI--~Cgp~Y   68 (138)
T KOG0896|consen    7 NFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKI--ECGPKY   68 (138)
T ss_pred             chhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEE--ecCCCC
Confidence            346777777665544333 4434433344  789999999999  89999998877  444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	90
3fsh_A	168	Crystal Structure Of The Ubiquitin Conjugating Enzy		3e-17
2kly_A	167	Solution Structure Of Human Ubiquitin Conjugating E		3e-17
2cyx_A	170	Structure Of Human Ubiquitin-Conjugating Enzyme E2		4e-17
3h8k_A	164	Crystal Structure Of Ube2g2 Complxed With The G2br		1e-16
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		5e-06
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		2e-04
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		2e-04
1jas_A	152	Hsubc2b Length = 152		5e-04

>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 42/43 (97%)
Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          MAG+AL+RLMAEYKQLT+NPPEGI+AGP+NEENFFEWEALI G
Sbjct: 4  MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMG 46

>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 42/43 (97%)
Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          MAG+AL+RLMAEYKQLT+NPPEGI+AGP+NEENFFEWEALI G
Sbjct: 3  MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMG 45

>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 42/43 (97%)
Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          MAG+AL+RLMAEYKQLT+NPPEGI+AGP+NEENFFEWEALI G
Sbjct: 6  MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMG 48

>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 41/42 (97%)
Query: 2  AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          AG+AL+RLMAEYKQLT+NPPEGI+AGP+NEENFFEWEALI G
Sbjct: 1  AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMG 42

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          M+ +A +RL+ E +QL  + P GI+AGP +E N F W+ LI G
Sbjct: 1  MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQG 43

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          M   + RRLM ++K+L  +PP G+   P  E+N   WEA+I G
Sbjct: 4  MTTPSRRRLMRDFKKLQEDPPAGVSGAPT-EDNILTWEAIIFG 45

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          M   + RRLM ++K+L  +PP G+   P  E+N   WEA+I G
Sbjct: 1  MTTPSRRRLMRDFKKLQEDPPAGVSGAPT-EDNILTWEAIIFG 42

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          M+  A RRLM ++K+L  +PP G+   P +E N  +W A+I G
Sbjct: 1  MSTPARRRLMRDFKRLQEDPPVGVSGAP-SENNIMQWNAVIFG 42

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	90
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	1e-17
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	9e-17
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	2e-16
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	9e-16
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	8e-15
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	8e-15
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	2e-14
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	1e-13
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	1e-13
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	3e-13
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	4e-13
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	4e-13
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	6e-13
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	7e-13
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	8e-13
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	9e-13
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	1e-12
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	1e-12
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	2e-12
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	3e-12
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	3e-12
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	3e-12
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	3e-12
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	3e-12
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	4e-12
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	6e-12
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	6e-12
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	7e-12
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	2e-11
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	6e-11
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	9e-11
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	3e-10
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	3e-09
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	4e-09
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	5e-09
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	8e-09
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	2e-08
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	4e-08
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	4e-08
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	5e-08
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	2e-07
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	3e-07
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	3e-07
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	1e-06
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	2e-06
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	1e-05
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	2e-05
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	7e-05
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	1e-04
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	4e-04

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score = 71.6 bits (176), Expect = 1e-17
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNL 56
          M+ +A +RL+ E +QL  + P GI+AGP +E N F W+ LI G     Y    F   L
Sbjct: 1  MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKL 58

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score = 69.3 bits (170), Expect = 9e-17
 Identities = 39/57 (68%), Positives = 47/57 (82%), Gaps = 2/57 (3%)

Query: 2  AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNL 56
          AG+AL+RLMAEYKQLT+NPPEGI+AGP+NEENFFEWEALI G +   +E+  F   L
Sbjct: 1  AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAIL 57

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score = 69.0 bits (169), Expect = 2e-16
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNL 56
          +       L  +  +L  NP EG  AG +++ + + WE LI G    LYE   F  +L
Sbjct: 14 LVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHL 71

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score = 67.1 bits (164), Expect = 9e-16
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 4  SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNL 56
          S+ + L+ E K L   P EG     V+E + + WE  I G     YE   F   L
Sbjct: 7  SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARL 61

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score = 64.3 bits (157), Expect = 8e-15
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNL 56
          M+  A RRLM ++K++  + P G+ A P+  +N   W A+I G  +  YE   F L L
Sbjct: 1  MSTPARRRLMRDFKRMKEDAPPGVSASPL-PDNVMVWNAMIIGPADTPYEDGTFRLLL 57

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score = 63.8 bits (156), Expect = 8e-15
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNL 56
          M+  A +RLM ++K+L  +PP GI   P  + N   W A+I G  +  ++   F L+L
Sbjct: 1  MSTPARKRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGPDDTPWDGGTFKLSL 57

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 63.5 bits (155), Expect = 2e-14
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNL 56
          M G A   L  ++  L  N  +GI A PV  E+  EWE  I G  N +++ + F L +
Sbjct: 20 MHGRAYLLLHRDFCDLKENNYKGITAKPV-SEDMMEWEVEIEGLQNSVWQGLVFQLTI 76

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score = 61.1 bits (149), Expect = 1e-13
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEE----NFFEWEALITGNK--LYEWMPFAL 54
          M+   L+RL  E K+   + P G  A PV +     +  +WEA I G +   +    + +
Sbjct: 1  MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 60

Query: 55 NL 56
           +
Sbjct: 61 TV 62

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score = 61.2 bits (149), Expect = 1e-13
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 6/62 (9%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEE----NFFEWEALITGNK--LYEWMPFAL 54
           +     RL  E KQ   + P G  A P        +   W+  I G     +E   + L
Sbjct: 7  HSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKL 66

Query: 55 NL 56
           +
Sbjct: 67 TM 68

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score = 60.0 bits (146), Expect = 3e-13
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 4  SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          S  +R+M E + +  +P   I    V+E +    +    G
Sbjct: 1  SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLG 40

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score = 60.0 bits (146), Expect = 4e-13
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEE----NFFEWEALITG--NKLYEWMPFAL 54
          M+G AL RL  E K    + P G +A P        N   WE  I G     +E   F L
Sbjct: 4  MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63

Query: 55 NL 56
           +
Sbjct: 64 RM 65

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score = 60.1 bits (146), Expect = 4e-13
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNLC 57
            G   +RL  E   L ++  +GI A P   +N F+W   I G    +YE + + L+L 
Sbjct: 27 ARGPVGKRLQQELMTLMMSGDKGISAFPE-SDNLFKWVGTIHGAAGTVYEDLRYKLSLE 84

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score = 60.6 bits (147), Expect = 6e-13
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 4  SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          S  +R+M E + +  +P   I    V+E +    +    G
Sbjct: 2  SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLG 41

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score = 59.2 bits (144), Expect = 7e-13
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 4  SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK-LYEWMPFALNL 56
          +A RRLM E +++     +      V+E N   W+ LI  +   Y+   F + +
Sbjct: 2  AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEI 55

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score = 58.8 bits (143), Expect = 8e-13
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          +    +R +  E   LT +PP+GI   P NEE+  + +  I G
Sbjct: 10 LPPHIIRLVYKEVTTLTADPPDGIKVFP-NEEDLTDLQVTIEG 51

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score = 59.4 bits (144), Expect = 9e-13
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
             +A +RL  +Y ++  +P   I A P+   N  EW  ++ G
Sbjct: 11 APTTATQRLKQDYLRIKKDPVPYICAEPL-PSNILEWHYVVRG 52

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score = 58.4 bits (142), Expect = 1e-12
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 3  GSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNL 56
           S  +RL  E + L ++   GI A P   +N F+W A + G  + +YE + + L L
Sbjct: 8  HSVSKRLQQELRTLLMSGDPGITAFPD-GDNLFKWVATLDGPKDTVYESLKYKLTL 62

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score = 58.4 bits (142), Expect = 1e-12
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 2  AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK-LYEWMPFALNL 56
          +  A  R++ E + L   PP  +     ++ N   W AL+  ++  Y    F L +
Sbjct: 2  SHMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRI 57

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score = 57.2 bits (139), Expect = 2e-12
 Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 3/56 (5%)

Query: 3  GSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNL 56
          G+A  R+  E      NPP           N   W     G  N +Y    + L +
Sbjct: 5  GNANYRIQKELHNFLNNPPINCTLDVH-PNNIRIWIVKYVGLENTIYANEVYKLKI 59

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score = 57.7 bits (140), Expect = 3e-12
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
              AL+R+  E   L+ +PP    AGPV  ++ F W+A I G
Sbjct: 18 YFQGALKRINKELNDLSKDPPTNCSAGPV-GDDMFHWQATIMG 59

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score = 58.2 bits (141), Expect = 3e-12
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 1   MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNL 56
           +  ++ +R+  E   +T++PP    AGP   +N +EW + I G    +YE   F L++
Sbjct: 45  LLSTSAKRIQKELADITLDPPPNCSAGPK-GDNIYEWRSTILGPPGSVYEGGVFFLDI 101

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score = 59.5 bits (144), Expect = 3e-12
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 2  AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
             AL+R+  E   L  +PP    AGPV  ++ F W+A I G
Sbjct: 1  GAMALKRIHKELNDLARDPPAQCSAGPV-GDDMFHWQATIMG 41

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score = 58.6 bits (142), Expect = 3e-12
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
               L RL  E K +     + I A    + NFFEW   I G
Sbjct: 20 QGSKELLRLQKELKDIENENVQEIDAHIK-DSNFFEWVGFIKG 61

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score = 56.9 bits (138), Expect = 3e-12
 Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 3/56 (5%)

Query: 3  GSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNL 56
          G+A  R+  E      NPP           N   W     G  N +Y    + + +
Sbjct: 19 GNANYRIQKELNNFLKNPPINCTIDVH-PSNIRIWIVQYVGLENTIYANEVYKIKI 73

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score = 56.6 bits (137), Expect = 4e-12
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 4  SALRRLMAEYKQLTINPPEGIIAGPVN-EENFFEWEALITG--NKLYEWMPFALNL 56
          S  +RL  E   L  +PP G+     + + +  +W   + G    LYE   F L  
Sbjct: 22 SMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLF 77

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score = 56.5 bits (137), Expect = 6e-12
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 2  AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          +  AL+R+  E + L  +PP    AGPV  ++ F W+A I G
Sbjct: 2  SHMALKRIQKELQDLGRDPPAQCSAGPV-GDDLFHWQATIMG 42

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score = 57.0 bits (138), Expect = 6e-12
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 13/69 (18%)

Query: 1  MAGSALRRLMAEYKQL---------TINPPEGII--AGPVNEENFFEWEALITG--NKLY 47
          MA + + R++ EYK +           NP  GII    P++E +  +WEA+I+G  +  Y
Sbjct: 3  MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62

Query: 48 EWMPFALNL 56
          E   F + +
Sbjct: 63 ENHQFRILI 71

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score = 56.9 bits (138), Expect = 7e-12
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
              AL+R+  E   L  +PP    AGPV  ++ F W+A I G
Sbjct: 16 RGSMALKRIHKELNDLARDPPAQCSAGPV-GDDMFHWQATIMG 57

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score = 55.0 bits (133), Expect = 2e-11
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2  AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNL 56
          +    RR++ E ++L   P  GI A P  E N   +  +I G  +  +E   F L L
Sbjct: 3  SAGLPRRIIKETQRLLAEPVPGIKAEPD-ESNARYFHVVIAGPQDSPFEGGTFKLEL 58

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score = 54.2 bits (131), Expect = 6e-11
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 2  AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          A S  +R++ E ++L  +P  GI A P  ++N   ++  I G
Sbjct: 3  AASLPKRIIKETEKLVSDPVPGITAEPH-DDNLRYFQVTIEG 43

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 53.9 bits (130), Expect = 9e-11
 Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 1/40 (2%)

Query: 4  SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
              RL  E   L   PP GI      ++   +  A I G
Sbjct: 4  QRASRLKRELHMLATEPPPGITCWQD-KDQMDDLRAQILG 42

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score = 51.8 bits (125), Expect = 3e-10
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 7  RRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNL 56
          RR+  E + L   PP GI+A PV  EN+  +  LI G     YE   + L L
Sbjct: 4  RRITKETQNLANEPPPGIMAVPV-PENYRHFNILINGPDGTPYEGGTYKLEL 54

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score = 49.7 bits (119), Expect = 3e-09
 Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 3/46 (6%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEE---NFFEWEALITG 43
          +      RL+ E ++      +G ++  + ++       W  +I G
Sbjct: 22 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIG 67

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score = 49.6 bits (119), Expect = 4e-09
 Identities = 5/38 (13%), Positives = 12/38 (31%)

Query: 4  SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALI 41
             + L+ E  +L  N P        +      ++  +
Sbjct: 14 VRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV 51

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score = 50.1 bits (119), Expect = 5e-09
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 4   SALRRLMAEYKQLTINPPEGIIAGP---VNEENFFEWEALITG--NKLYEWMPFALNL 56
           +  RRL  E   L+ + P    +      +EE     + LITG  +  Y    F  ++
Sbjct: 76  ARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDV 133

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score = 48.6 bits (116), Expect = 8e-09
 Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPV---NEENFFEWEALITG--NKLYEWMPFALN 55
          +      RL+ E ++      +G ++  +    +     W  +I G    +YE   ++L 
Sbjct: 32 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 91

Query: 56 L 56
          +
Sbjct: 92 I 92

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score = 47.3 bits (113), Expect = 2e-08
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 1  MAGSALRRLMAEYKQLTINPPE---GIIAGPVNEENFFEWEALITG--NKLYEWMPFALN 55
          MA  A++R+  E+K++  +       I    V +ENF E    I G  +  YE   + L 
Sbjct: 5  MANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLE 63

Query: 56 L 56
          +
Sbjct: 64 I 64

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score = 47.1 bits (112), Expect = 4e-08
 Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 11/54 (20%)

Query: 1  MAGSALRRLMAEYKQL-----------TINPPEGIIAGPVNEENFFEWEALITG 43
          M   + +R++ + K L           +   P       V+ +  + W   +  
Sbjct: 5  MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKA 58

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score = 47.4 bits (113), Expect = 4e-08
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 1  MAGSALRRLMAEYKQLT---INPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALN 55
          MA  A++R+  E+K++          I    V +ENF E    I G  +  YE   + L 
Sbjct: 2  MANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLE 60

Query: 56 L 56
          +
Sbjct: 61 I 61

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score = 46.8 bits (111), Expect = 5e-08
 Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 2  AGSALRRLMAEYKQLTINPPE--GIIAGPVNEENFFEWEALITG 43
          +  A  RLM E + +  +     GI +  +  ++ ++W   +  
Sbjct: 25 SVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQK 68

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score = 44.2 bits (105), Expect = 2e-07
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 1  MAGS-ALRRLMAEYKQLTIN-PPEGIIAGPVNEE--NFFEWEALITG--NKLYEWMPFAL 54
          M+      RL+ E ++      PE    G  + +     +W   I G  +  +E   ++L
Sbjct: 2  MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSL 61

Query: 55 NL 56
          ++
Sbjct: 62 SI 63

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score = 44.6 bits (106), Expect = 3e-07
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 5  ALRRLMAEYKQL-TINPPEGIIAGPVNEE--NFFEWEALITG--NKLYEWMPFALNL 56
             RL+ E ++    N  EG+  G  + +      W   I G    ++E   ++L +
Sbjct: 22 RSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTI 78

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score = 45.3 bits (107), Expect = 3e-07
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 1   MAGSALRRLMAEYKQLTINPPE---GIIAGPVNEENFFEWEALITG--NKLYEWMPFALN 55
           MA  A++R+  E+K++  +       I    V +ENF E    I G  +  YE   + L 
Sbjct: 54  MANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLE 112

Query: 56  L 56
           +
Sbjct: 113 I 113

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score = 42.7 bits (101), Expect = 1e-06
 Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK-LYEWMPFALNL 56
          MA +A  R+  +  +L  N P+       + ++   ++ +I  ++  Y+   F  + 
Sbjct: 3  MASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSF 57

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 14/53 (26%)

Query: 4  SALRRLMAEYKQL-------------TINPPEGIIAGPVNEENFFEWEALITG 43
              RL+ E   +             T +   G+ A  V   +   W   I G
Sbjct: 32 REQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIV-GGDIHRWRGFIAG 83

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 5/42 (11%)

Query: 2  AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
               RR+  +  +L  +  E  I G        E+     G
Sbjct: 23 PSPGKRRMDTDVIKLIESKHEVTILG-----GLNEFVVKFYG 59

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score = 39.2 bits (92), Expect = 2e-05
 Identities = 4/37 (10%), Positives = 10/37 (27%), Gaps = 1/37 (2%)

Query: 7  RRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
            L  +    T     G         +  +++ +  G
Sbjct: 2  TSLTRKQCDFTKLIMAGYDLELN-NGSTQDFDVMFHG 37

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score = 38.2 bits (89), Expect = 7e-05
 Identities = 5/40 (12%), Positives = 14/40 (35%), Gaps = 1/40 (2%)

Query: 4  SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          +A  RL  +   L + P   +     + ++    ++    
Sbjct: 29 AARIRLKRDLDSLDLPPTVTLNVIT-SPDSADRSQSPKLE 67

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 7/54 (12%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 4  SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK-LYEWMPFALNL 56
          +A  R+  +  +L +     I     + ++   ++ +I  ++  Y+   F  + 
Sbjct: 26 AAQLRIQKDINELNLPKTCDI--SFSDPDDLLNFKLVICPDEGFYKSGKFVFSF 77

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score = 35.8 bits (83), Expect = 4e-04
 Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 5/42 (11%)

Query: 2  AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
             + RR   +Y +L           P   +   E+     G
Sbjct: 10 NLRSNRRREMDYMRL---CNSTRKVYP--SDTVAEFWVEFKG 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	90
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	99.81
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	99.77
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	99.77
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	99.77
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	99.77
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	99.76
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	99.76
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	99.76
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	99.76
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	99.75
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	99.75
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	99.74
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	99.74
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	99.74
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	99.74
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	99.74
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	99.74
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	99.73
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	99.73
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	99.73
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	99.73
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	99.72
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	99.72
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	99.72
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	99.72
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	99.72
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	99.72
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	99.72
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	99.71
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	99.7
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	99.7
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	99.7
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	99.69
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	99.69
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	99.69
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	99.67
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	99.67
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	99.67
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	99.66
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	99.66
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	99.65
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	99.65
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.62
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	99.61
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	99.61
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	99.61
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	99.58
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	99.56
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	99.55
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	99.54
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	99.54
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.01
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	96.87
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	95.28
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	93.7

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=99.81  E-value=5.9e-20  Score=123.19  Aligned_cols=71  Identities=37%  Similarity=0.579  Sum_probs=61.5

Q ss_pred             CchHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCcc
Q psy10015          1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCL   72 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~   72 (90)
                      ||+.+.+||+||+++|+++++++|++.+.+++|+++|++.|.||+  +|+||.|+++|  .||++|      |.|.||++
T Consensus         1 M~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i--~fp~~YP~~PP~v~f~t~i~   78 (165)
T 2ucz_A            1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKL--EFPKDYPLSPPKLTFTPSIL   78 (165)
T ss_dssp             -CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCCEEEESSCCS
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEE--ECCccCCCCCCEEEEeCCCc
Confidence            898899999999999999999999999976679999999999999  89999998887  677665      56777754


Q ss_pred             C
Q psy10015         73 K   73 (90)
Q Consensus        73 ~   73 (90)
                      |
T Consensus        79 H   79 (165)
T 2ucz_A           79 H   79 (165)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=99.77  E-value=4.3e-19  Score=119.78  Aligned_cols=70  Identities=31%  Similarity=0.546  Sum_probs=60.4

Q ss_pred             CchHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCcc
Q psy10015          1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCL   72 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~   72 (90)
                      ||+.+.+||+||+++|+++++++|.+.+. ++|+++|+++|.||+  ||+||.|+++|  .||++|      |.|.|+++
T Consensus         1 Ms~~a~~RL~kEl~~l~~~~~~gi~~~p~-~~nl~~W~~~I~GP~~tpYegG~f~l~i--~fp~~YP~~PP~v~F~t~i~   77 (169)
T 1ayz_A            1 MSTPARRRLMRDFKRMKEDAPPGVSASPL-PDNVMVWNAMIIGPADTPYEDGTFRLLL--EFDEEYPNKPPHVKFLSEMF   77 (169)
T ss_dssp             -CCHHHHHHHHHHHHHHHSCCTTEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCCEEEESSCCC
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEec-CCccccceEEEECCCCCCcCCCEEEEEE--ECcccCCCCCCccccccCCc
Confidence            88889999999999999999999999986 679999999999998  99999998887  666665      57778754


Q ss_pred             C
Q psy10015         73 K   73 (90)
Q Consensus        73 ~   73 (90)
                      |
T Consensus        78 H   78 (169)
T 1ayz_A           78 H   78 (169)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=99.77  E-value=6.8e-19  Score=117.83  Aligned_cols=70  Identities=57%  Similarity=0.935  Sum_probs=60.1

Q ss_pred             chHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          2 AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         2 s~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      |+.|.+||+||+++++++++++|++.+.+++|+++|++.|.||+  ||+||.|+++|  .||++|      |.|.||++|
T Consensus         1 a~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i--~fp~~YP~~PP~v~f~t~i~H   78 (164)
T 3h8k_A            1 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAIL--SFPLDYPLSPPKMRFTCEMFH   78 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTSSCCEEEECSCCCC
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEE--ECCCCCCCCCCEEEEcCCCcc
Confidence            45689999999999999999999999976669999999999999  89999999887  666665      577777444

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=99.77  E-value=1.1e-18  Score=116.48  Aligned_cols=70  Identities=26%  Similarity=0.417  Sum_probs=60.8

Q ss_pred             CchHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCcc
Q psy10015          1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCL   72 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~   72 (90)
                      ||..+.+||+||+++|+++++++|++.+ +++|+++|+++|.||+  ||+||.|+++|  .||++|      |.|.||++
T Consensus        10 ~s~~~~~RL~kEl~~l~~~~~~gi~~~~-~~~~l~~w~~~i~Gp~~tpyegg~f~~~i--~fp~~YP~~PP~v~f~t~i~   86 (158)
T 1zdn_A           10 LPPHIIRLVYKEVTTLTADPPDGIKVFP-NEEDLTDLQVTIEGPEGTPYAGGLFRMKL--LLGKDFPASPPKGYFLTKIF   86 (158)
T ss_dssp             SCHHHHHHHHHHHHHHHHSCCTTEEEEE-CSSCTTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCCEEEESSCCC
T ss_pred             cCHHHHHHHHHHHHHHHhCCCCCEEEEE-CCCChhheeEEEECCCCCCccCcEEEEEE--EcCCCCCCCCCEEEeccCcc
Confidence            5677899999999999999999999998 4789999999999999  89999998877  677665      57778854


Q ss_pred             C
Q psy10015         73 K   73 (90)
Q Consensus        73 ~   73 (90)
                      |
T Consensus        87 H   87 (158)
T 1zdn_A           87 H   87 (158)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=99.77  E-value=7.4e-19  Score=116.46  Aligned_cols=70  Identities=31%  Similarity=0.577  Sum_probs=61.0

Q ss_pred             CchHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCcc
Q psy10015          1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCL   72 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~   72 (90)
                      ||+.+.+||++|+++|+++++++|.+.+. ++|+++|+++|.||+  +|+||.|+++|  .||++|      |.|.|+++
T Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~i~~~~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i--~fp~~YP~~PP~v~f~t~i~   77 (152)
T 2aak_A            1 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGPDDTPWDGGTFKLSL--QFSEDYPNKPPTVRFVSRMF   77 (152)
T ss_dssp             CCCHHHHHHHHHHHHHHHSCCTTEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCCEEEESSCCC
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEeC-CCCccEEEEEEeCCCCCCccCCEEEEEE--ECCCCCCCCCCEEEEecCcc
Confidence            88889999999999999999999999985 679999999999998  99999998877  667665      56777744


Q ss_pred             C
Q psy10015         73 K   73 (90)
Q Consensus        73 ~   73 (90)
                      |
T Consensus        78 H   78 (152)
T 2aak_A           78 H   78 (152)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=99.76  E-value=7.1e-19  Score=118.77  Aligned_cols=69  Identities=29%  Similarity=0.479  Sum_probs=60.2

Q ss_pred             CchHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCcc
Q psy10015          1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCL   72 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~   72 (90)
                      |++.+.+||+||+++|+++++++|.+.+. ++|+++|+++|.||+  ||+||.|+++|  .||++|      |.|.|+++
T Consensus        20 M~~~a~~RL~kEl~~l~~~~~~gi~~~p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i--~fp~~YP~~PP~V~F~T~i~   96 (169)
T 1yrv_A           20 MHGRAYLLLHRDFCDLKENNYKGITAKPV-SEDMMEWEVEIEGLQNSVWQGLVFQLTI--HFTSEYNYAPPVVKFITIPF   96 (169)
T ss_dssp             GGCHHHHHHHHHHHHHHHHCCTTEEEEEC-STTSCEEEEEEECCTTSTTTTCEEEEEE--ECCTTBTTBCCEEEESSCCC
T ss_pred             cChHHHHHHHHHHHHHHhCCCCCEEEEEc-CCccccceeEEECCCCCCccceEEEEEE--ECCccCCCCCCcceecCCCc
Confidence            77788999999999999999999999985 679999999999999  89999998887  666664      57778743

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=99.76  E-value=1.1e-18  Score=112.62  Aligned_cols=71  Identities=20%  Similarity=0.261  Sum_probs=56.5

Q ss_pred             CchHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCcc
Q psy10015          1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCL   72 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~   72 (90)
                      |+ .+.+||+||+++++++++++|++.+ +++|+++|+++|.||+  +|+||.|+++|  .||++|      |.|.|+..
T Consensus         4 m~-~a~~RL~kEl~~l~~~~~~~~~~~~-~~~~l~~w~~~i~GP~~tpYegg~f~~~i--~fp~~YP~~PP~v~f~t~i~   79 (125)
T 2fo3_A            4 MG-NANYRIQKELHNFLNNPPINCTLDV-HPNNIRIWIVKYVGLENTIYANEVYKLKI--IFPDDYPLKPPIVYFLQKPP   79 (125)
T ss_dssp             ------CHHHHHHHHHHHSCCTTEEEEE-CTTCTTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCCEEEECSSCC
T ss_pred             ch-HHHHHHHHHHHHHHhCCCCCEEEEe-CcchhhhhheEEeCCCCCCcCCCEEEEEE--EcCCCCCCCCCEEEEeCCCC
Confidence            54 4679999999999999999999998 4789999999999999  89999998887  677775      56777742


Q ss_pred             CCC
Q psy10015         73 KSP   75 (90)
Q Consensus        73 ~~~   75 (90)
                      ++|
T Consensus        80 ~HP   82 (125)
T 2fo3_A           80 KHT   82 (125)
T ss_dssp             CBT
T ss_pred             CCC
Confidence            334

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=99.76  E-value=9.4e-19  Score=116.65  Aligned_cols=71  Identities=23%  Similarity=0.351  Sum_probs=58.6

Q ss_pred             CchHHHHHHHHHHHHhhhCCCCCEEEeecCC----CCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccc
Q psy10015          1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNE----ENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWY   68 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~~~----~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~   68 (90)
                      ||+.+.+||+||+++|++++++||.+.+.++    +|+++|+++|.||+  +|+||.|+++|  .||++|      |.|.
T Consensus         1 Ms~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i--~fp~~YP~~PP~v~f~   78 (157)
T 2gjd_A            1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITV--EYPNEYPSKPPKVKFP   78 (157)
T ss_dssp             --CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEE--ECCTTTTTSCCEEECC
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEE--EcCCCCCCCCCeeecc
Confidence            8888999999999999999999999988532    48999999999999  89999998887  677665      5677


Q ss_pred             cCccC
Q psy10015         69 IPCLK   73 (90)
Q Consensus        69 ~~~~~   73 (90)
                      |+.+|
T Consensus        79 t~i~H   83 (157)
T 2gjd_A           79 AGFYH   83 (157)
T ss_dssp             TTCCC
T ss_pred             CCCcc
Confidence            77443

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=99.76  E-value=8.3e-19  Score=116.61  Aligned_cols=70  Identities=26%  Similarity=0.366  Sum_probs=60.3

Q ss_pred             CchHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCcc
Q psy10015          1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCL   72 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~   72 (90)
                      ||..+.+||+||+++|+++++++|++.+. ++|+++|+++|.||+  +|+||.|+++|  .||++|      |.|.||++
T Consensus         2 ~s~~~~~RL~kEl~~l~~~~~~~i~~~~~-~~~l~~w~~~i~GP~~tpyegg~f~~~i--~fp~~YP~~PP~v~f~t~i~   78 (154)
T 2c2v_B            2 GSAGLPRRIIKETQRLLAEPVPGIKAEPD-ESNARYFHVVIAGPQDSPFEGGTFKLEL--FLPEEYPMAAPKVRFMTKIY   78 (154)
T ss_dssp             CSCSCCHHHHHHHHHHHHSCCTTEEEEEC-SSCTTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTSSCCEEEECSCCC
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCEEEEEC-CCchheEEEEEECCCCCCcCCCeEEEEE--EcCCCCCCCCCEEEeecCcc
Confidence            67778899999999999999999999985 679999999999999  89999998877  677665      56777744


Q ss_pred             C
Q psy10015         73 K   73 (90)
Q Consensus        73 ~   73 (90)
                      |
T Consensus        79 H   79 (154)
T 2c2v_B           79 H   79 (154)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=99.75  E-value=1.6e-18  Score=117.19  Aligned_cols=69  Identities=29%  Similarity=0.464  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          3 GSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         3 ~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      +.+.+||+||+++|+++++++|++.+.+++|+++|+++|.||+  +|+||.|+++|  .||++|      |.|.||++|
T Consensus        16 ~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i--~fp~~YP~~PP~v~F~T~i~H   92 (172)
T 2awf_A           16 PRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHL--TFPKDYPLRPPKMKFITEIWH   92 (172)
T ss_dssp             CTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTSSCCEEEECSCCCC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEE--ECCcccCCCCCcccccCCCcc
Confidence            4678999999999999999999999876679999999999999  99999998887  677665      577777543

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=99.75  E-value=2.4e-18  Score=117.30  Aligned_cols=71  Identities=28%  Similarity=0.390  Sum_probs=59.3

Q ss_pred             Cc-hHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCc
Q psy10015          1 MA-GSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPC   71 (90)
Q Consensus         1 Ms-~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~   71 (90)
                      |+ +.+.+||+||+++|+++++++|++.+.+++|+++|++.|.||+  +|+||.|+++|  .||++|      |.|.||+
T Consensus         3 m~~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i--~fp~~YP~~PP~v~f~t~i   80 (183)
T 3rz3_A            3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARL--KFPIDYPYSPPAFRFLTKM   80 (183)
T ss_dssp             --CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTSSCCEEEESSCC
T ss_pred             CcchHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEE--ECCCCCCCCCCeeEecCCC
Confidence            44 4688999999999999999999999656789999999999999  89999998887  677765      5677775


Q ss_pred             cC
Q psy10015         72 LK   73 (90)
Q Consensus        72 ~~   73 (90)
                      +|
T Consensus        81 ~H   82 (183)
T 3rz3_A           81 WH   82 (183)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=99.74  E-value=3.8e-18  Score=113.01  Aligned_cols=68  Identities=29%  Similarity=0.547  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          3 GSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         3 ~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      +.|.+||+||+++++++++++|++.+. ++|+++|+++|.||+  +|+||.|+++|  .||++|      |.|.||++|
T Consensus         3 ~~a~~RL~kEl~~l~~~~~~~i~~~p~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i--~fp~~YP~~pP~v~f~t~i~H   78 (151)
T 4gpr_A            3 AMAMRRIQKELREIQQDPPCNCSAGPV-GDDIFHWTATITGPDDSPYQGGLFFLDV--HFPVDYPFKAPRVTFMTKVYH   78 (151)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEES-SSCTTEEEEEEECCSSSTTTTCEEEEEE--ECCTTTTSSCCEEEESSCCCB
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEEc-CCCceEEEEEEeCCCCCCcCCCEEEEEE--ECCCCCCCCcceeEEecCccc
Confidence            468899999999999999999999995 679999999999999  89999998887  666665      577777554

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=99.74  E-value=2e-18  Score=115.43  Aligned_cols=71  Identities=32%  Similarity=0.520  Sum_probs=60.2

Q ss_pred             CchHHHHHHHHHHHHhhhCCCCCEEEeecC----CCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccc
Q psy10015          1 MAGSALRRLMAEYKQLTINPPEGIIAGPVN----EENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWY   68 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~~----~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~   68 (90)
                      ||+.+.+||+||+++|+++++++|.+.+..    ++|+++|+++|.||+  +|+||.|+++|  .||++|      |.|.
T Consensus         4 M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i--~fp~~YP~~PP~v~f~   81 (161)
T 2grr_A            4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM--LFKDDYPSSPPKCKFE   81 (161)
T ss_dssp             CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTSSCCEEEES
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEE--EcCcccCCCCCEEEEe
Confidence            787889999999999999999999998752    358999999999999  89999998877  677665      5677


Q ss_pred             cCccC
Q psy10015         69 IPCLK   73 (90)
Q Consensus        69 ~~~~~   73 (90)
                      ||++|
T Consensus        82 t~i~H   86 (161)
T 2grr_A           82 PPLFH   86 (161)
T ss_dssp             SCCCS
T ss_pred             cCccc
Confidence            77544

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=99.74  E-value=2.3e-18  Score=114.61  Aligned_cols=70  Identities=31%  Similarity=0.546  Sum_probs=59.6

Q ss_pred             CchHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCcc
Q psy10015          1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCL   72 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~   72 (90)
                      |++.+.+||+||+++|+++++++|++.+. ++|+++|+++|.||+  +|+||.|+++|  .||++|      |.|.||++
T Consensus         6 ~~~~~~~RL~kEl~~l~~~~~~~i~~~p~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i--~fp~~YP~~PP~v~f~t~i~   82 (156)
T 2e2c_A            6 ERHSVSKRLQQELRTLLMSGDPGITAFPD-GDNLFKWVATLDGPKDTVYESLKYKLTL--EFPSDYPYKPPVVKFTTPCW   82 (156)
T ss_dssp             SCCCHHHHHHHHHHHHHHHCCTTEEEEES-SSCTTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTSSCCEEEESSCCC
T ss_pred             cchHHHHHHHHHHHHHHhCCCCCEEEEEC-CCCccEEEEEEECCCCCCcCCcEEEEEE--ECCCCCCCCCCEEEEeCCcc
Confidence            34568899999999999999999999985 679999999999999  89999998877  666665      57777765


Q ss_pred             C
Q psy10015         73 K   73 (90)
Q Consensus        73 ~   73 (90)
                      |
T Consensus        83 H   83 (156)
T 2e2c_A           83 H   83 (156)
T ss_dssp             B
T ss_pred             c
Confidence            4

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=99.74  E-value=1.3e-18  Score=113.95  Aligned_cols=68  Identities=26%  Similarity=0.366  Sum_probs=56.7

Q ss_pred             CchHHHHHHHHHHHHhhhCCCCCEEEe--ecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccC
Q psy10015          1 MAGSALRRLMAEYKQLTINPPEGIIAG--PVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIP   70 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~--p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~   70 (90)
                      ||+. ++||+||+++++++++++|++.  + +++|+++|++.|.||+  ||+||.|+++|  .||++|      |.|.||
T Consensus        20 Ms~~-~~RL~kEl~~l~~~~~~gi~v~~~~-~~~nl~~W~~~I~GP~~TpYegG~f~l~i--~fp~~YP~~PP~v~F~T~   95 (136)
T 2a7l_A           20 MASM-QKRLQKELLALQNDPPPGMTLNEKS-VQNSITQWIVDMEGAPGTLYEGEKFQLLF--KFSSRYPFDSPQVMFTGE   95 (136)
T ss_dssp             GTTS-CHHHHHHHHHHHHSCCTTCCCCTTC-CCCSCEEEEEEEECCTTSTTTTCEEEEEE--EECTTTTTSCCEEEEESS
T ss_pred             ccHH-HHHHHHHHHHHHhCCCCCEEEEEee-CccccceeEEEEECCCCCccccEEEEEEE--ECCCCCCCCCCEEEEeCC
Confidence            5543 4999999999999999999864  5 4779999999999999  89999998887  677665      567777


Q ss_pred             cc
Q psy10015         71 CL   72 (90)
Q Consensus        71 ~~   72 (90)
                      ++
T Consensus        96 i~   97 (136)
T 2a7l_A           96 NI   97 (136)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=99.74  E-value=4.2e-18  Score=113.64  Aligned_cols=70  Identities=24%  Similarity=0.318  Sum_probs=59.2

Q ss_pred             CchHHHHHHHHHHHHhhhC---CCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------ccccc
Q psy10015          1 MAGSALRRLMAEYKQLTIN---PPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYI   69 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~---~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~   69 (90)
                      ||+.+.+||+||+++|+++   ++++|++.+. ++|+++|+++|.||+  ||+||.|+++|  .||++|      |.|.|
T Consensus         5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i--~fp~~YP~~PP~v~f~t   81 (159)
T 2bep_A            5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLEI--KIPETYPFNPPKVRFIT   81 (159)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEEC-SSSSSEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTSSCCEEEESS
T ss_pred             chHHHHHHHHHHHHHHHhcCCCCCCCEEEEeC-CCchheEEEEEECCCCCCccCCEEEEEE--eCCCcCCCCCCEEEeeC
Confidence            6777899999999999985   5789999985 579999999999999  89999998877  677665      57777


Q ss_pred             CccC
Q psy10015         70 PCLK   73 (90)
Q Consensus        70 ~~~~   73 (90)
                      |++|
T Consensus        82 ~i~H   85 (159)
T 2bep_A           82 KIWH   85 (159)
T ss_dssp             CCCB
T ss_pred             CCCc
Confidence            7544

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=99.74  E-value=5.3e-18  Score=114.25  Aligned_cols=69  Identities=23%  Similarity=0.315  Sum_probs=59.3

Q ss_pred             chHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          2 AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         2 s~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      |+.+.+||+||+++|+++++++|++.+. ++|+++|+++|.||+  +|+||.|+++|  .||++|      |.|.||++|
T Consensus         2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~-~~~l~~w~~~I~GP~~tpYegg~f~~~i--~fp~~YP~~PP~v~f~t~i~H   78 (169)
T 1yh2_A            2 SMQRASRLKRELHMLATEPPPGITCWQD-KDQMDDLRAQILGGANTPYEKGVFKLEV--IIPERYPFEPPQIRFLTPIYH   78 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEES-SSCTTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTSSCCEEEESSCCCB
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEeC-CCchheEEEEEECCCCCCccCCEEEEEE--EeCCCCCCCCcEEEeecCCcc
Confidence            4568899999999999999999999984 679999999999998  99999998887  677665      567777544

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=99.73  E-value=5.5e-18  Score=110.86  Aligned_cols=70  Identities=17%  Similarity=0.189  Sum_probs=54.5

Q ss_pred             Cch-HHHHHHHHHHHHhhhC-CCCCEEEeecCCC--CceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccc
Q psy10015          1 MAG-SALRRLMAEYKQLTIN-PPEGIIAGPVNEE--NFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWY   68 (90)
Q Consensus         1 Ms~-~a~rRL~kEl~~l~~~-~~~~i~~~p~~~~--nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~   68 (90)
                      ||+ .+.+||+||+++++++ ++++|++.+.+++  |+++|+++|.||+  +|+||.|+++|  .||++|      |.|.
T Consensus         2 m~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i--~fp~~YP~~PP~v~f~   79 (138)
T 1jat_B            2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSI--DCGPNYPDSPPKVTFI   79 (138)
T ss_dssp             -CCCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEE--ECCTTTTTSCCEEEES
T ss_pred             cchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEE--ECCCCCCCCCCceEEE
Confidence            664 5678999999999998 7899999886433  5999999999999  89999998887  677665      5677


Q ss_pred             cCcc
Q psy10015         69 IPCL   72 (90)
Q Consensus        69 ~~~~   72 (90)
                      |+++
T Consensus        80 t~i~   83 (138)
T 1jat_B           80 SKIN   83 (138)
T ss_dssp             BCCC
T ss_pred             cccc
Confidence            7743

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=99.73  E-value=5.9e-18  Score=111.91  Aligned_cols=69  Identities=29%  Similarity=0.521  Sum_probs=58.7

Q ss_pred             chHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          2 AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         2 s~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      |..+.+||+||+++|+++++++|++.+. ++|+++|+++|.||+  +|+||.|+++|  .||++|      |.|.||++|
T Consensus         2 s~~~~~RL~kEl~~l~~~~~~~~~~~~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i--~fp~~YP~~PP~v~f~t~i~H   78 (150)
T 1z2u_A            2 SHMALKRIQKELQDLGRDPPAQCSAGPV-GDDLFHWQATIMGPPESPYQGGVFFLTI--HFPTDYPFKPPKVAFTTRIYH   78 (150)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCSSEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTSSCCEEEESSCCCB
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEEC-CCcceEEEEEEECCCCCCcCCCEEEEEE--ECCCCCCCCCcEEEEecCccc
Confidence            3457899999999999999999999985 579999999999999  89999998887  677665      567777443

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=99.73  E-value=8.2e-18  Score=109.93  Aligned_cols=70  Identities=17%  Similarity=0.227  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccCCC
Q psy10015          4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLKSP   75 (90)
Q Consensus         4 ~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~~~   75 (90)
                      .+.+||+||+++++++++++|.+.+. ++|+++|++.|.||+  +|+||.|+++|  .||++|      |.|.|+..++|
T Consensus        20 ~~~~RL~kEl~~l~~~~~~~~~~~~~-~~nl~~W~~~I~GP~~tpYegg~f~~~i--~fp~~YP~~PP~v~f~t~i~~HP   96 (136)
T 2h2y_A           20 NANYRIQKELNNFLKNPPINCTIDVH-PSNIRIWIVQYVGLENTIYANEVYKIKI--IFPDNYPLKPPIVYFLQKPPKHT   96 (136)
T ss_dssp             SHHHHHHHHHHHHHHSCCTTEEEEEC-TTCTTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCCEEEECSSCCCCT
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEec-cccccccEEEEECCCCCceeCCEEEEEE--EeCCCCCCCCCEEEEeCCCCCCC
Confidence            47899999999999999999999984 689999999999999  89999998887  677665      57778753444


Q ss_pred             c
Q psy10015         76 S   76 (90)
Q Consensus        76 ~   76 (90)
                      +
T Consensus        97 n   97 (136)
T 2h2y_A           97 H   97 (136)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=99.73  E-value=4.5e-18  Score=114.19  Aligned_cols=70  Identities=23%  Similarity=0.389  Sum_probs=58.4

Q ss_pred             chHHHHHHHHHHHHhhhCCCCCEEEeecCC-C---CceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------ccccc
Q psy10015          2 AGSALRRLMAEYKQLTINPPEGIIAGPVNE-E---NFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYI   69 (90)
Q Consensus         2 s~~a~rRL~kEl~~l~~~~~~~i~~~p~~~-~---nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~   69 (90)
                      |..|.+||+||+++|++++++||.+.+.++ |   |+++|+++|.||+  ||+||.|+++|  .||++|      |.|.|
T Consensus         8 ~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i--~fp~~YP~~pP~v~F~t   85 (163)
T 3rcz_B            8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTM--AFPEEYPTRPPKCRFTP   85 (163)
T ss_dssp             -CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCCEEEESS
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEE--ECCCCCCCCCCEEEEeC
Confidence            346899999999999999999999998633 2   8999999999999  89999999887  666664      57778


Q ss_pred             CccC
Q psy10015         70 PCLK   73 (90)
Q Consensus        70 ~~~~   73 (90)
                      +++|
T Consensus        86 ~i~H   89 (163)
T 3rcz_B           86 PLFH   89 (163)
T ss_dssp             CCCS
T ss_pred             CCcc
Confidence            7443

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=99.72  E-value=3.8e-18  Score=116.19  Aligned_cols=70  Identities=31%  Similarity=0.582  Sum_probs=58.6

Q ss_pred             CchHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCcc
Q psy10015          1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCL   72 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~   72 (90)
                      |++.+.+||+||+++|+++++++|++.+. ++|+++|+++|.||+  +|+||.|+++|  .||++|      |.|.||++
T Consensus        27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i--~fp~~YP~~PP~V~F~T~i~  103 (179)
T 1i7k_A           27 ARGPVGKRLQQELMTLMMSGDKGISAFPE-SDNLFKWVGTIHGAAGTVYEDLRYKLSL--EFPSGYPYNAPTVKFLTPCY  103 (179)
T ss_dssp             ---CHHHHHHHHHHHHHHHCCTTEEEEEE-TTEEEEEEEEEEBCTTSTTBTCEEEEEE--ECCTTTTTSCCEEEESSCCC
T ss_pred             cChHHHHHHHHHHHHHHhCCCCCEEEEEc-CCcccccEEEEECCCCCCcCCCEEEEEE--ECCCcCCCCCceEEEecCCc
Confidence            46678899999999999999999999985 679999999999999  89999998887  677665      57778855


Q ss_pred             C
Q psy10015         73 K   73 (90)
Q Consensus        73 ~   73 (90)
                      |
T Consensus       104 H  104 (179)
T 1i7k_A          104 H  104 (179)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=99.72  E-value=5.3e-18  Score=116.88  Aligned_cols=70  Identities=24%  Similarity=0.318  Sum_probs=58.1

Q ss_pred             CchHHHHHHHHHHHHhhhC---CCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------ccccc
Q psy10015          1 MAGSALRRLMAEYKQLTIN---PPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYI   69 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~---~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~   69 (90)
                      ||+.+.+||+||+++|+++   ++.+|++.+. ++|+++|+++|.||+  ||+||.|+++|  .||++|      |.|.|
T Consensus         2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i--~fp~~YP~~pP~v~f~t   78 (201)
T 3k9o_A            2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLEI--KIPETYPFNPPKVRFIT   78 (201)
T ss_dssp             --CTTHHHHHHHHHHHHTCHHHHTTSEEEEEC-STTSSEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCCEEEESS
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEEC-CCCccEEEEEEECCCCCCCCCCEEEEEE--ECCCcCCCCCCcccccc
Confidence            8888999999999999987   3689999996 679999999999999  99999998887  666665      57778


Q ss_pred             CccC
Q psy10015         70 PCLK   73 (90)
Q Consensus        70 ~~~~   73 (90)
                      +++|
T Consensus        79 ~i~H   82 (201)
T 3k9o_A           79 KIWH   82 (201)
T ss_dssp             CCCB
T ss_pred             Cccc
Confidence            7544

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=99.72  E-value=1.1e-17  Score=112.59  Aligned_cols=68  Identities=31%  Similarity=0.562  Sum_probs=58.4

Q ss_pred             hHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          3 GSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         3 ~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      +.+.+||+||+++|+++++++|++.+. ++|+++|+++|.||+  ||+||.|+++|  .||++|      |.|.||++|
T Consensus        20 ~~~~~RL~kEl~~l~~~~~~gi~~~~~-~~nl~~W~~~I~GP~~TpYegG~f~l~i--~fp~~YP~~PP~V~F~T~i~H   95 (166)
T 2ayv_A           20 QGALKRINKELNDLSKDPPTNCSAGPV-GDDMFHWQATIMGPEDSPYSGGVFFLNI--HFPSDYPFKPPKVNFTTKIYH   95 (166)
T ss_dssp             TTHHHHHHHHHHHHHHSCCTTEEEEEC-SSCTTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTSSCCEEEECSCCCB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEc-CCCcceeeEEEECCCCCCcCCCEEEEEE--eCCCcCCCCCceeeeccCCcC
Confidence            457899999999999999999999995 679999999999999  99999998887  666665      567777544

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=99.72  E-value=1.3e-17  Score=112.12  Aligned_cols=68  Identities=29%  Similarity=0.540  Sum_probs=58.5

Q ss_pred             hHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          3 GSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         3 ~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      +.+.+||+||+++|+++++++|++.+. ++|+++|+++|.||+  ||+||.|+++|  .||++|      |.|.||++|
T Consensus        18 ~~~~~RL~kEl~~l~~~~~~gi~~~p~-~~nl~~W~~~I~GP~~TpYegg~f~l~i--~fp~~YP~~PP~v~F~T~i~H   93 (165)
T 2c4o_A           18 SMALKRIHKELNDLARDPPAQCSAGPV-GDDMFHWQATIMGPNDSPYQGGVFFLTI--HFPTDYPFKPPKVAFTTRIYH   93 (165)
T ss_dssp             HHHHHHHHHHHHHHHSSCCTTEEEEES-SSCTTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTSSCCEEEECSCCCB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEc-CCCcceeEEEEECCCCCCccCceEEEEE--ECCCcCCCCCCEEEEecCCcC
Confidence            457899999999999999999999995 679999999999999  89999998887  677765      567777443

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=99.72  E-value=1.1e-17  Score=116.80  Aligned_cols=69  Identities=26%  Similarity=0.360  Sum_probs=59.2

Q ss_pred             chHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          2 AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         2 s~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      ++.+.+||+||+++|+++++++|++.+. ++|+++|+++|.||+  ||+||.|+++|  .||++|      |.|.|+++|
T Consensus        21 ~s~a~~RL~kEl~~l~~~~~~gi~~~p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i--~fP~~YP~~PP~V~F~T~i~H   97 (216)
T 2pwq_A           21 GSKELLRLQKELKDIENENVQEIDAHIK-DSNFFEWVGFIKGPEGTPYEGGHFTLAI--TIPNDYPYNPPKIKFVTKIWH   97 (216)
T ss_dssp             SCHHHHHHHHHHHHHHHSCTTTEEEEEC-SSCTTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTSSCCEEEESSCCCB
T ss_pred             cCHHHHHHHHHHHHHHhCCCCCEEEEEc-CCccceeEEEEeCCCCCCccceEEEEEE--ECCCcCCCCCCcccccCCCcC
Confidence            4568899999999999999999999995 679999999999999  99999998887  666665      577777443

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=99.72  E-value=5.7e-18  Score=111.88  Aligned_cols=67  Identities=16%  Similarity=0.214  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          5 ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         5 a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      +.+||+||+++++++++++|++.+.+++|+++|+++|.||+  ||+||.|+++|  .||++|      |.|.|+++|
T Consensus         2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i--~fp~~YP~~PP~v~f~t~i~H   76 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDI--EVPMEYPFKPPKMQFDTKVYH   76 (149)
T ss_dssp             CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEE--ECCTTTTSSCCEEEESSCCCB
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEE--ECCCCCCCCCCEEEEeCCCcc
Confidence            46999999999999999999999975559999999999998  89999998887  677665      577777544

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=99.72  E-value=2e-17  Score=110.96  Aligned_cols=69  Identities=17%  Similarity=0.250  Sum_probs=57.3

Q ss_pred             hHHHHHHHHHHHHhhhCCCCC-EEEeecCCCC--ceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCc
Q psy10015          3 GSALRRLMAEYKQLTINPPEG-IIAGPVNEEN--FFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPC   71 (90)
Q Consensus         3 ~~a~rRL~kEl~~l~~~~~~~-i~~~p~~~~n--l~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~   71 (90)
                      ..+.+||+||+++++++++++ +++.+.+++|  +++|+++|.||+  +|+||.|+++|  .||++|      |.|.||+
T Consensus        24 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i--~fp~~YP~~PP~v~F~T~i  101 (160)
T 2a4d_A           24 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKI--ECGPKYPEAPPFVRFVTKI  101 (160)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCCEEEESBCC
T ss_pred             chHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEE--ECCCcCCCCCcEEEEecCc
Confidence            457899999999999998888 7888755554  999999999998  89999998887  677665      5777885


Q ss_pred             cC
Q psy10015         72 LK   73 (90)
Q Consensus        72 ~~   73 (90)
                      +|
T Consensus       102 ~H  103 (160)
T 2a4d_A          102 NM  103 (160)
T ss_dssp             CC
T ss_pred             ee
Confidence            44

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=99.71  E-value=1.4e-17  Score=112.47  Aligned_cols=67  Identities=25%  Similarity=0.435  Sum_probs=54.5

Q ss_pred             CchHHHHHHHHHHHHhhh-C-C------CC---CEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC---
Q psy10015          1 MAGSALRRLMAEYKQLTI-N-P------PE---GIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN---   64 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~-~-~------~~---~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~---   64 (90)
                      ||+.+.+||+||+++|++ + +      +.   ++.+.+++++|+++|+++|.||+  ||+||.|+++|  .||++|   
T Consensus         3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i--~fp~~YP~~   80 (172)
T 2y9m_A            3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILI--EVPSSYPMN   80 (172)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTS
T ss_pred             CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEE--ECCCcCCCC
Confidence            777899999999999998 4 3      33   46677755789999999999999  89999998887  677665   


Q ss_pred             ---ccccc
Q psy10015         65 ---SGWYI   69 (90)
Q Consensus        65 ---~~~~~   69 (90)
                         |.|.|
T Consensus        81 PP~v~f~t   88 (172)
T 2y9m_A           81 PPKISFMQ   88 (172)
T ss_dssp             CCEEEECT
T ss_pred             CCEEEEee
Confidence               57777

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=99.70  E-value=1.1e-17  Score=111.15  Aligned_cols=67  Identities=25%  Similarity=0.413  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         4 ~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      .+.+||+||+++|+++++++|++.+. ++|+++|++.|.||+  +|+||.|+++|  .||++|      |.|.||++|
T Consensus         5 ~~~~RL~kE~~~l~~~~~~~i~~~~~-~~~l~~w~~~I~Gp~~tpyegg~f~~~i--~fp~~YP~~PP~v~f~t~i~H   79 (155)
T 1jat_A            5 SLPKRIIKETEKLVSDPVPGITAEPH-DDNLRYFQVTIEGPEQSPYEDGIFELEL--YLPDDYPMEAPKVRFLTKIYH   79 (155)
T ss_dssp             SCCHHHHHHHHHHHHSCCTTEEEEEE-TTEEEEEEEEEECCTTSTTTTEEEEEEE--ECCTTTTTSCCEEEECSCCCB
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEEC-CCchhEEEEEEECCCCCCccCcEEEEEE--EcCCCCCCCCCcceeeccccc
Confidence            46799999999999999999999985 679999999999999  89999998887  666665      567777444

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=99.70  E-value=1.7e-17  Score=109.71  Aligned_cols=65  Identities=32%  Similarity=0.536  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          6 LRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         6 ~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      .+||+||+++|+++++++|++.+. ++|+++|+++|.||+  ||+||.|+++|  .||++|      |.|.||.+|
T Consensus         3 ~~RL~kEl~~l~~~~~~~i~~~~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i--~fp~~YP~~PP~v~f~t~i~H   75 (149)
T 2r0j_A            3 PRRITKETQNLANEPPPGIMAVPV-PENYRHFNILINGPDGTPYEGGTYKLEL--FLPEQYPMEPPKVRFLTKIYH   75 (149)
T ss_dssp             CHHHHHHHHHHHHSCCTTEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCCEEEECSCCCB
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEC-CCcccEEEEEEECCCCCCcCCCEEEEEE--eCCcccCCCCCeeEeccCCcc
Confidence            589999999999999999999985 679999999999999  89999998887  666665      577777544

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=99.70  E-value=3.9e-17  Score=109.06  Aligned_cols=66  Identities=18%  Similarity=0.310  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHhhhC-CCCCEEEeecCCC--CceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCc
Q psy10015          4 SALRRLMAEYKQLTIN-PPEGIIAGPVNEE--NFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPC   71 (90)
Q Consensus         4 ~a~rRL~kEl~~l~~~-~~~~i~~~p~~~~--nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~   71 (90)
                      .+.+||+||+++++++ ++++|++.+.+++  |+++|+++|.||+  ||+||.|+++|  .||++|      |.|.||+
T Consensus        21 ~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i--~fp~~YP~~PP~v~F~t~i   97 (156)
T 2q0v_A           21 PRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTI--FCDDNYPDSPPTVKFDTKI   97 (156)
T ss_dssp             CHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCCEEEESBCC
T ss_pred             hHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEE--ECCCcCCCCCCeEEEEccc
Confidence            4679999999999998 7899999886433  6999999999999  89999998887  677765      5677764

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=99.69  E-value=3.2e-17  Score=116.80  Aligned_cols=70  Identities=24%  Similarity=0.318  Sum_probs=59.7

Q ss_pred             CchHHHHHHHHHHHHhhhC---CCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------ccccc
Q psy10015          1 MAGSALRRLMAEYKQLTIN---PPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYI   69 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~---~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~   69 (90)
                      ||+.+.+||+||+++|+++   ++.+|++.+. ++|+++|+++|.||+  ||+||.|+++|  .||++|      |.|.|
T Consensus        54 Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~-~dnl~~W~~~I~GP~~TpYegG~f~l~i--~fp~~YP~~PP~V~F~T  130 (253)
T 3e46_A           54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLEI--KIPETYPFNPPKVRFIT  130 (253)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEEC-STTSSEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTSSCCEEEESS
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCCCCEEEEEC-CCcccEEEEEEECCCCCCcCCCEEEEEE--ECCCCCCCCCCeeeecC
Confidence            6778999999999999987   4789999996 679999999999999  99999998887  666665      57778


Q ss_pred             CccC
Q psy10015         70 PCLK   73 (90)
Q Consensus        70 ~~~~   73 (90)
                      +++|
T Consensus       131 ~i~H  134 (253)
T 3e46_A          131 KIWH  134 (253)
T ss_dssp             CCCB
T ss_pred             CCcc
Confidence            7544

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=99.69  E-value=4.7e-17  Score=111.97  Aligned_cols=67  Identities=27%  Similarity=0.538  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         4 ~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      .+.+||++|+++|+++++++|.+.+. ++|+++|+++|.||+  +|+||.|+++|  .||++|      |.|.|+++|
T Consensus        48 ~a~~RL~kEl~~l~~~~~~gi~~~p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i--~fp~~YP~~PP~V~F~T~i~H  122 (194)
T 3bzh_A           48 TSAKRIQKELADITLDPPPNCSAGPK-GDNIYEWRSTILGPPGSVYEGGVFFLDI--TFTPEYPFKPPKVTFRTRIYH  122 (194)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEEES-SSCTTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCCEEEESSCCCB
T ss_pred             HHHHHHHHHHHHHHhCCCCCceeecc-cCccccceEEEeCCCCCCccCCEEEEEE--ECCCcCCCCCccccccCCCcc
Confidence            47899999999999999999999985 679999999999999  89999998887  666665      577777544

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=99.69  E-value=5.5e-17  Score=110.99  Aligned_cols=64  Identities=27%  Similarity=0.435  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccC
Q psy10015          4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIP   70 (90)
Q Consensus         4 ~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~   70 (90)
                      .+.+||+||+++|+++++++|.+.+. ++|+++|+++|.||+  ||+||.|+++|  .||++|      |.|.||
T Consensus        14 ~a~~RL~kEl~~l~~~~~~~i~~~p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i--~fP~~YP~~PP~v~f~T~   85 (187)
T 2f4w_A           14 TATQRLKQDYLRIKKDPVPYICAEPL-PSNILEWHYVVRGPEMTPYEGGYYHGKL--IFPREFPFKPPSIYMITP   85 (187)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTSSCCEEEECSC
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEEc-CCccceeEEEEeCCCCCCCCCCEEEEEE--EcCCCCCCCCCcccccCC
Confidence            47899999999999999999999985 679999999999999  89999998887  677665      567776

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=99.67  E-value=1.7e-17  Score=115.81  Aligned_cols=68  Identities=18%  Similarity=0.222  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         4 ~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      .+.+||+||+++|+++++++|++.+.+++++++|+++|.||+  ||+||.|+++|  .||++|      |.|.|+++|
T Consensus         2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i--~fP~~YP~~PP~V~F~T~i~H   77 (215)
T 1tte_A            2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDI--EVPMEYPFKPPKMQFDTKVYH   77 (215)
T ss_dssp             TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEE--ECCSCSSSCCCEEEETTTCCC
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEE--eCCccCCCCCCcccccCCCcc
Confidence            367999999999999999999999975556789999999999  99999998887  566665      577777443

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=99.67  E-value=7.2e-17  Score=111.03  Aligned_cols=67  Identities=19%  Similarity=0.308  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHhhhCCC-------------CCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC----
Q psy10015          4 SALRRLMAEYKQLTINPP-------------EGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN----   64 (90)
Q Consensus         4 ~a~rRL~kEl~~l~~~~~-------------~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~----   64 (90)
                      .+.+||+||+++|+++++             .+|.+.+. ++|+++|+++|.||+  ||+||.|+++|  .||++|    
T Consensus        32 ~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~-~~nl~~W~~~I~GP~~TpYegG~f~l~i--~fp~~YP~~P  108 (193)
T 2f4z_A           32 REQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIV-GGDIHRWRGFIAGPLGTPYEGGHFTLDI--VIPPDYPYNP  108 (193)
T ss_dssp             CHHHHHHHHHHHHHHC----------------CEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSC
T ss_pred             HHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEc-CCCcceEEEEEeCCCCCCcCCCEEEEEE--ECCCcCCCCC
Confidence            467899999999999887             79999986 579999999999998  89999998887  677665    


Q ss_pred             --cccccCccC
Q psy10015         65 --SGWYIPCLK   73 (90)
Q Consensus        65 --~~~~~~~~~   73 (90)
                        |.|.||++|
T Consensus       109 P~V~F~T~i~H  119 (193)
T 2f4z_A          109 PKMKFVTKIWH  119 (193)
T ss_dssp             CEEEESSCCCB
T ss_pred             CeEEEecCCcc
Confidence              577776443

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=99.67  E-value=7.3e-17  Score=108.27  Aligned_cols=68  Identities=10%  Similarity=0.049  Sum_probs=57.5

Q ss_pred             hHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          3 GSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         3 ~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      +.+.+||+||+++|+++++++|++.+.+++|+++|++.| ||+  ||+||.|+++|  .||++|      |.|.||++|
T Consensus        13 s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i--~fp~~YP~~pP~v~f~t~i~H   88 (167)
T 3fn1_B           13 SVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFET--EVPDAYNMVPPKVKCLTKIWH   88 (167)
T ss_dssp             CHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEE--ECCTTBTTBCCEEEECSCCCC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEE--ECCCCCCCCCCeeEecCCccc
Confidence            357899999999999999999999876678999999999 777  99999999887  566654      578888554

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=99.66  E-value=1.6e-17  Score=111.64  Aligned_cols=70  Identities=16%  Similarity=0.306  Sum_probs=60.0

Q ss_pred             CchHHHHHHHHHHHHhhhCC------------CCCEEEeecCCCCceEEEEEEeccC--CCC--CCeEEEEEEEEecCCC
Q psy10015          1 MAGSALRRLMAEYKQLTINP------------PEGIIAGPVNEENFFEWEALITGNK--LYE--WMPFALNLCYFFSKGN   64 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~------------~~~i~~~p~~~~nl~~w~~~I~GP~--~Ye--gg~f~l~i~i~f~~~~   64 (90)
                      ||+.+.+||+||+++|++++            +.+|.+.+. ++|+++|+++|.||+  +|+  ||.|+++|  .||++|
T Consensus         5 Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i--~fp~~Y   81 (167)
T 4ds2_A            5 MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVD-TDTIYNWILKVKAPADSVYGGAGNTYQLSV--LFSDDY   81 (167)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEE-ESSTTEEEEEEECCTTSGGGTTCCEEEEEE--ECCTTT
T ss_pred             ccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeC-CCcccEEEEEEECCCCCCccCCCCEEEEEE--ECCCCC
Confidence            88888999999999999877            678998884 679999999999999  899  99998887  666665


Q ss_pred             ------cccccCccC
Q psy10015         65 ------SGWYIPCLK   73 (90)
Q Consensus        65 ------~~~~~~~~~   73 (90)
                            |.|.||++|
T Consensus        82 P~~pP~v~f~t~i~H   96 (167)
T 4ds2_A           82 PHEPPTVRFVTPVYS   96 (167)
T ss_dssp             TTSCCEEEESSCCCC
T ss_pred             CCCCCEEEEeCCccc
Confidence                  577888655

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=99.66  E-value=8.1e-17  Score=106.92  Aligned_cols=67  Identities=21%  Similarity=0.356  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHHHhhhCCCCCEEE-eecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          3 GSALRRLMAEYKQLTINPPEGIIA-GPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         3 ~~a~rRL~kEl~~l~~~~~~~i~~-~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      ..+.+||+||+++|+++++++|.+ .+ +++|+++|+++|. |+  +|+||.|+++|  .||++|      |.|.||++|
T Consensus         3 m~~~~RL~kEl~~l~~~~~~~i~~~~~-~~~~l~~w~~~I~-P~~tpyegg~f~~~i--~fp~~YP~~PP~v~f~t~i~H   78 (155)
T 1wzv_A            3 HMASMRVVKELEDLQKKPPPYLRNLSS-DDANVLVWHALLL-PDQPPYHLKAFNLRI--SFPPEYPFKPPMIKFTTKIYH   78 (155)
T ss_dssp             --CHHHHHHHHHHHHHSCCTTEEEEEE-CSSCTTEEEEEEC-CCSTTGGGEEEEEEE--ECCTTTTSSCCEEEESSCCCB
T ss_pred             chHHHHHHHHHHHHHhCCCCCEEEEec-CCCchheEEEEEc-CCCCCCCCCEEEEEE--ECCCCCCCCCCcceeeCCCcc
Confidence            347899999999999999999999 55 5789999999999 88  89999998887  677665      577787554

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=99.65  E-value=7.5e-17  Score=109.02  Aligned_cols=68  Identities=18%  Similarity=0.270  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHhhhCCCCC-EEEeecCCCC--ceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCcc
Q psy10015          4 SALRRLMAEYKQLTINPPEG-IIAGPVNEEN--FFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCL   72 (90)
Q Consensus         4 ~a~rRL~kEl~~l~~~~~~~-i~~~p~~~~n--l~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~   72 (90)
                      .+.+||+||+++|+++++++ +++.+.+++|  +++|+++|.||+  +|+||.|+++|  .||++|      |.|.||++
T Consensus        35 p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i--~fp~~YP~~PP~v~F~T~i~  112 (170)
T 2hlw_A           35 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKI--ECGPKYPEAPPFVRFVTKIN  112 (170)
T ss_dssp             CHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEE--ECCSSCTTSCCEEEECBCCC
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEE--ECCCCCCCCCCeeEEecccc
Confidence            46899999999999998888 7787755554  999999999998  89999998887  666665      57888865


Q ss_pred             C
Q psy10015         73 K   73 (90)
Q Consensus        73 ~   73 (90)
                      |
T Consensus       113 H  113 (170)
T 2hlw_A          113 M  113 (170)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=99.65  E-value=5.1e-17  Score=111.13  Aligned_cols=71  Identities=15%  Similarity=0.200  Sum_probs=60.0

Q ss_pred             CchHHHHHHHHHHHHhhhCC---CCCEEEeecCCCCceEEEEEEecc-C--CCCC-----------CeEEEEEEEEecCC
Q psy10015          1 MAGSALRRLMAEYKQLTINP---PEGIIAGPVNEENFFEWEALITGN-K--LYEW-----------MPFALNLCYFFSKG   63 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~---~~~i~~~p~~~~nl~~w~~~I~GP-~--~Yeg-----------g~f~l~i~i~f~~~   63 (90)
                      ||+.+.+||+||+++|++++   +.+|++.+. ++|+++|+++|.|| +  ||+|           |.|+++|  .||++
T Consensus        24 ~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~-~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i--~fp~~  100 (186)
T 1zuo_A           24 GSVQASDRLMKELRDIYRSQSYKTGIYSVELI-NDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNF--SFKDN  100 (186)
T ss_dssp             CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEE-TTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEE--ECCTT
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEc-CCccceeEEEEECCCCCCCccccchhhccccCceEEEEEE--ECCCC
Confidence            67788999999999999988   688999986 57999999999997 4  7988           8998887  66666


Q ss_pred             C------cccccCccCC
Q psy10015         64 N------SGWYIPCLKS   74 (90)
Q Consensus        64 ~------~~~~~~~~~~   74 (90)
                      |      |.|.||++|+
T Consensus       101 YP~~PP~V~f~tpi~hP  117 (186)
T 1zuo_A          101 FPFDPPFVRVVLPVLSG  117 (186)
T ss_dssp             TTSSCCEEEEEESCEES
T ss_pred             CCCCCCeEEEeCCccCC
Confidence            5      6788887764

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.62  E-value=6.5e-16  Score=115.56  Aligned_cols=68  Identities=29%  Similarity=0.541  Sum_probs=58.9

Q ss_pred             hHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          3 GSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         3 ~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      +.|.+||+||+++|+++++++|++.|. ++|+++|+++|.||+  ||+||.|+++|  .||++|      |.|.||++|
T Consensus         2 s~a~~RL~kEl~~l~~~~~~~~~~~p~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i--~fp~~YP~~pP~v~f~t~i~H   77 (399)
T 4ddg_A            2 AMALKRIHKELNDLARDPPAQCSAGPV-GDDMFHWQATIMGPNDSPYQGGVFFLTI--HFPTDYPFKPPKVAFTTRIYH   77 (399)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSSEEEEEE-TTEEEEEEEEEECCTTSSSTTCEEEEEE--ECCSSTTTSCCEEEESSCCCC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEc-CCcceEEEEEEECCCCCCCCCCEEEEEE--ECCcccCCCCcEEEeeccccc
Confidence            457899999999999999999999996 679999999999999  99999999887  666654      577788544

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=99.61  E-value=1.7e-16  Score=105.24  Aligned_cols=66  Identities=23%  Similarity=0.344  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          5 ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         5 a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      +.+||+||+++|++++++++.+.+.+++|+++|++.|. |+  ||+||.|+++|  .||++|      |.|.||++|
T Consensus         3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i--~fp~~YP~~PP~v~f~t~i~H   76 (154)
T 1c4z_D            3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEI--NFPAEYPFKPPKITFKTKIYH   76 (154)
T ss_dssp             -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEE--ECCTTTTTSCCEEEESSCCCC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEE--EeCCCCCCCCCEEEEeCCCcc
Confidence            56899999999999999999877656789999999998 77  89999998877  677665      577787554

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=99.61  E-value=8.3e-16  Score=102.74  Aligned_cols=66  Identities=14%  Similarity=0.222  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          3 GSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         3 ~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      +.+.+||+||+++|  +++++|++...+++|+++|+++| ||+  +|+||.|+++|  .||++|      |.|.||++|
T Consensus         5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i--~fp~~YP~~PP~v~f~t~i~H   78 (160)
T 1y8x_A            5 SAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSF--KVGQGYPHDPPKVKCETMVYH   78 (160)
T ss_dssp             CHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEE--ECCTTTTTSCCEEEECSCCCB
T ss_pred             cHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEE--eCCCcCCCCCCEEEEecCCcc
Confidence            35789999999999  57889999832578999999988 888  89999998887  677665      577787554

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=99.61  E-value=7.2e-16  Score=104.91  Aligned_cols=67  Identities=15%  Similarity=0.231  Sum_probs=54.6

Q ss_pred             chHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          2 AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         2 s~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      ++.+.+||+||+++|  +++++|++...+++|+++|+++| ||+  ||+||.|+++|  .||++|      |.|.||++|
T Consensus        24 ~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i--~fp~~YP~~PP~v~F~t~i~H   98 (180)
T 2nvu_C           24 ASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSF--KVGQGYPHDPPKVKCETMVYH   98 (180)
T ss_dssp             CCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEE--ECCTTTTTSCCEEEECSCCCB
T ss_pred             ccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEE--eCCCcCCCCCCcCceeccCcc
Confidence            346789999999999  57889999833578999999998 888  89999998877  677665      577777544

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=99.58  E-value=4.5e-16  Score=103.27  Aligned_cols=64  Identities=14%  Similarity=0.261  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         4 ~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      ++.+||+||+++++++   ++++.+. ++|+++|+++|.||+  ||+||.|+++|  .||++|      |.|.|+++|
T Consensus         2 sa~~Rl~kEl~~l~~~---~~~v~~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i--~fp~~YP~~pP~v~f~t~i~H   73 (152)
T 2onu_A            2 TSLTRKQCDFTKLIMA---GYDLELN-NGSTQDFDVMFHGPNGTAYEGGIWKVHV--TLPDDYPFASPSIGFMNKLLH   73 (152)
T ss_dssp             -CCCHHHHTHHHHHHH---TCCEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCCEEEESSCCCC
T ss_pred             hHHHHHHHHHHhcCcC---CCEEEEc-cCccceEEEEEECCCCCcccceEEEEEE--cCcccCCCCCCeEEEecCCcc
Confidence            3568999999999874   6788885 679999999999999  89999998887  677665      577787443

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=99.56  E-value=2e-15  Score=102.80  Aligned_cols=66  Identities=14%  Similarity=0.132  Sum_probs=51.6

Q ss_pred             Cch--HHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccC
Q psy10015          1 MAG--SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIP   70 (90)
Q Consensus         1 Ms~--~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~   70 (90)
                      ||+  .+.+||+||+++|+.   ++|++.+.  +|+++|+++|.||+  ||+||.|+++|  .||++|      |.|.|+
T Consensus        20 ms~~~~a~~RL~kEl~~l~~---~g~~v~~~--ddl~~W~~~I~GP~~tpYegG~f~l~i--~fp~~YP~~PP~V~F~t~   92 (179)
T 2z5d_A           20 MSSPSPGKRRMDTDVIKLIE---SKHEVTIL--GGLNEFVVKFYGPQGTPYEGGVWKVRV--DLPDKYPFKSPSIGFMNK   92 (179)
T ss_dssp             ---CCHHHHHHHHHHHHHHH---SSSCEEEE--EETTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCCEEEESSC
T ss_pred             CCCchHHHHHHHHHHHhcCc---CCCEEEEC--CCCceeEEEEECCCCCCccCCEEEEEe--eCCCCCCCCCceEEEecC
Confidence            554  478999999999985   46888875  47899999999999  99999998887  677665      567776


Q ss_pred             ccC
Q psy10015         71 CLK   73 (90)
Q Consensus        71 ~~~   73 (90)
                      ++|
T Consensus        93 i~H   95 (179)
T 2z5d_A           93 IFH   95 (179)
T ss_dssp             CCB
T ss_pred             Ccc
Confidence            443

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=99.55  E-value=5.4e-15  Score=108.44  Aligned_cols=67  Identities=22%  Similarity=0.284  Sum_probs=55.8

Q ss_pred             CchHHHHHHHHHHHHhhhCCCCC----EEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccc
Q psy10015          1 MAGSALRRLMAEYKQLTINPPEG----IIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWY   68 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~~~~----i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~   68 (90)
                      ||+.+.+||++|+++|+++++++    +.+.+ +++|++.|+++|.||+  ||+||.|+++|  .||++|      |.|.
T Consensus        73 ~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~-~ednl~~w~~~I~GP~~TpYegG~F~l~I--~fP~dYP~~PP~V~F~  149 (323)
T 3ceg_A           73 NSAARARRLAQEAVTLSTSLPLSSSSSVFVRC-DEERLDIMKVLITGPADTPYANGCFEFDV--YFPQDYPSSPPLVNLE  149 (323)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEE-ESSCTTEEEEEEEBCTTSTTBTCEEEEEE--ECCTTTTTSCCEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCcccceeecc-cCCCccccEEEEeCCCCCCcCCCEEEEEE--eCCCCCCCCCCeEEEe
Confidence            56678999999999999988764    45555 4679999999999999  99999998887  677665      5777


Q ss_pred             cC
Q psy10015         69 IP   70 (90)
Q Consensus        69 ~~   70 (90)
                      ||
T Consensus       150 T~  151 (323)
T 3ceg_A          150 TT  151 (323)
T ss_dssp             CS
T ss_pred             cc
Confidence            77

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=99.54  E-value=7.3e-15  Score=100.66  Aligned_cols=66  Identities=17%  Similarity=0.256  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHHHHhhhCCCCCEEEe----ecCCCCce---EEEEEEeccC-CCCCCeEEEEEEEEecCCC------cccc
Q psy10015          3 GSALRRLMAEYKQLTINPPEGIIAG----PVNEENFF---EWEALITGNK-LYEWMPFALNLCYFFSKGN------SGWY   68 (90)
Q Consensus         3 ~~a~rRL~kEl~~l~~~~~~~i~~~----p~~~~nl~---~w~~~I~GP~-~Yegg~f~l~i~i~f~~~~------~~~~   68 (90)
                      +.+.+||+||+++|+  ++++|++.    + +++|++   +|+++|.+++ ||+||.|+++|  .||++|      |.|.
T Consensus        28 s~a~~RL~kEl~~l~--~~~~i~~~~~~~p-~~~nl~~~~~w~~~I~p~~tpyegg~f~~~i--~fp~~YP~~PP~v~f~  102 (190)
T 3o2u_A           28 SAARIRLKRDLDSLD--LPPTVTLNVITSP-DSADRSQSPKLEVIVRPDEGYYNYGSINFNL--DFNEVYPIEPPKVVCL  102 (190)
T ss_dssp             CHHHHHHHHHHHTCC--CCTTEEEEEEECT-TCCCTTSCCEEEEEECCSSSTTTTCCEEEEE--ECCTTTTTSCCEEEEC
T ss_pred             cHHHHHHHHHHHhcc--CCCCEEEEecCCC-CCccCCcCCeEEEEEcCCCCCCCCCEEEEEE--ECCCCCCCCCceeEEe
Confidence            467899999999998  77899997    5 578999   9999998665 99999998887  666665      5777


Q ss_pred             cCccC
Q psy10015         69 IPCLK   73 (90)
Q Consensus        69 ~~~~~   73 (90)
                      ||++|
T Consensus       103 t~i~H  107 (190)
T 3o2u_A          103 KKIFH  107 (190)
T ss_dssp             SCCCC
T ss_pred             cCccc
Confidence            88544

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=99.54  E-value=5.2e-15  Score=99.93  Aligned_cols=63  Identities=17%  Similarity=0.198  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         4 ~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      .+.+||++|+++|++++. ++   +. ++|+++|+++|.||+  +|+||.|+++|  .||++|      |.|.|+++|
T Consensus        12 ~~~~RL~~El~~l~~~~~-~v---~~-~~~l~~w~~~I~GP~~tpyegg~f~~~i--~fp~~YP~~PP~v~F~t~i~H   82 (171)
T 1yf9_A           12 RSNRRREMDYMRLCNSTR-KV---YP-SDTVAEFWVEFKGPEGTPYEDGTWMLHV--QLPSDYPFKSPSIGFCNRILH   82 (171)
T ss_dssp             -CCHHHHHHHHHHHSSSS-CE---EE-CSSTTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCCEEEESSCCCB
T ss_pred             cHHHHHHHHHHHHHhCCC-CC---CC-CCCceEEEEEEECCCCCCccCceEEEEE--EcCCCCCCCCCeEEeecCccc
Confidence            467999999999999874 34   33 578999999999999  89999998887  677665      577777544

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.01  E-value=2.2e-11  Score=82.21  Aligned_cols=52  Identities=13%  Similarity=0.197  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCC--------eEEEEEEEEecCCC
Q psy10015          6 LRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWM--------PFALNLCYFFSKGN   64 (90)
Q Consensus         6 ~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg--------~f~l~i~i~f~~~~   64 (90)
                      .+||++|+++|++      .+.+. ++|+.+|.+.+.||+  +|+||        .|.+++.+.||.+|
T Consensus        34 ~~RL~eE~k~L~k------~v~p~-k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~Y   95 (172)
T 2z6o_A           34 VQRLKEEYQSLIR------YVENN-KNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITY   95 (172)
T ss_dssp             HHHHHHHHHHHHH------HHHHH-HHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTT
T ss_pred             HHHHHHHHHHHHH------HhccC-ccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCC
Confidence            8999999999998      34553 569999999999999  89999        23444455888887

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=96.87  E-value=0.00011  Score=49.00  Aligned_cols=52  Identities=15%  Similarity=0.164  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCC--------eEEEEEEEEecCCC
Q psy10015          6 LRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWM--------PFALNLCYFFSKGN   64 (90)
Q Consensus         6 ~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg--------~f~l~i~i~f~~~~   64 (90)
                      ..||+.|++.|.+-       ...+.++=.+|...+.||+  +|.|+        .|.+++.++||.+|
T Consensus        36 ~~RlkeEy~alI~y-------v~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tY   97 (168)
T 3kpa_A           36 TARLKEEYASLITY-------VEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTY   97 (168)
T ss_dssp             HHHHHHHHHHHHHH-------HHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTT
T ss_pred             HHHHHHHHHHHHHH-------HHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccC
Confidence            57999999998431       1111223356878888888  68888        44556666899888

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=95.28  E-value=0.076  Score=35.15  Aligned_cols=58  Identities=9%  Similarity=-0.129  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHhhhCCC---CCEEEeecCCCCceEEEEEEeccC--CCCCCe-EEEEEEEEecCCC
Q psy10015          6 LRRLMAEYKQLTINPP---EGIIAGPVNEENFFEWEALITGNK--LYEWMP-FALNLCYFFSKGN   64 (90)
Q Consensus         6 ~rRL~kEl~~l~~~~~---~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~-f~l~i~i~f~~~~   64 (90)
                      .+|..+|+.++.+.-+   +...+... +|...++-..+.|+-  +|+||. |.+.|.+.||.+|
T Consensus        30 ~~~~~~dv~~~l~~yp~L~p~t~~yt~-~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~Y   93 (162)
T 3r3q_A           30 GRTTFHDSLALLDNFHSLRPRTRVFTH-SDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMY   93 (162)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEEC-TTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTT
T ss_pred             hhHHHHHHHHHHHhCCCCceeeeeEEc-CCCChheEEEEECccCccccCcccccccEEEEeCccc
Confidence            4677788777755322   22222333 455566666666655  899999 8888888999998

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=93.70  E-value=0.099  Score=34.05  Aligned_cols=32  Identities=9%  Similarity=0.294  Sum_probs=28.7

Q ss_pred             CCCceEEEEEEeccCCCCCCeEEEEEEEEecCCC
Q psy10015         31 EENFFEWEALITGNKLYEWMPFALNLCYFFSKGN   64 (90)
Q Consensus        31 ~~nl~~w~~~I~GP~~Yegg~f~l~i~i~f~~~~   64 (90)
                      ..++..|.++|  |-+|+|+.|.+-|.+-||++|
T Consensus        50 ~~~LL~l~GtI--pv~y~g~~y~iPi~Iwlp~~Y   81 (146)
T 3obq_A           50 SRELMNLTGTI--PVPYRGNTYNIPICLWLLDTY   81 (146)
T ss_dssp             TCEEEEEEEEE--EEECSSCEEEEEEEEECCTTT
T ss_pred             hheEEEEEEEe--eeeecCccccceEEEEeCccC
Confidence            35899999999  678999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	90
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	2e-12
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	5e-11
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	2e-10
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	2e-10
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	4e-10
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	6e-10
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	2e-09
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	4e-09
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	7e-09
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	1e-08
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	2e-08
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	8e-08
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	1e-07
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	2e-07
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	4e-07
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	5e-07
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	5e-07
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	1e-06
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	1e-06
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	2e-06
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	2e-06
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	3e-06
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	3e-06
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	1e-05
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	5e-04
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	6e-04
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	0.003
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	0.004

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 56.7 bits (136), Expect = 2e-12
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFF 60
          M G A   L  ++  L  N  +GI A PV  E+  EWE  I G +   W      L   F
Sbjct: 1  MHGRAYLLLHRDFCDLKENNYKGITAKPV-SEDMMEWEVEIEGLQNSVWQGLVFQLTIHF 59

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 52.9 bits (126), Expect = 5e-11
 Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 2/67 (2%)

Query: 4  SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFFSKG 63
          S  +R+M E + +  +P   I    V+E +    +    G     +              
Sbjct: 1  SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGG--KFVVDIEVP 58

Query: 64 NSGWYIP 70
              + P
Sbjct: 59 MEYPFKP 65

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 2e-10
 Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 4/62 (6%)

Query: 3  GSALRRLMAEYKQLTINPPEGIIAGPVNEE----NFFEWEALITGNKLYEWMPFALNLCY 58
          G AL RL  E K    + P G +A P        N   WE  I G K   W      L  
Sbjct: 1  GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 60

Query: 59 FF 60
           F
Sbjct: 61 LF 62

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 50.8 bits (121), Expect = 2e-10
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 8  RLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNLCY 58
           L  +  +L  NP EG  AG +++ + + WE LI G  + LYE   F  +L +
Sbjct: 3  LLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTF 55

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 50.9 bits (121), Expect = 4e-10
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 4  SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFF 60
          S  +RL  E + L ++   GI A P + +N F+W A + G K   +      L   F
Sbjct: 9  SVSKRLQQELRTLLMSGDPGITAFP-DGDNLFKWVATLDGPKDTVYESLKYKLTLEF 64

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 6e-10
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 5  ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK-LYEWMPFALNLCY 58
          A  R++ E + L   PP  +     ++ N   W AL+  ++  Y    F L + +
Sbjct: 1  ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISF 55

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 2e-09
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 7  RRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG-NKLYEWMPFALNLCY 58
          RRLM E +++     +      V+E N   W+ LI   N  Y+   F + + +
Sbjct: 2  RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINF 54

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score = 48.2 bits (114), Expect = 4e-09
 Identities = 11/56 (19%), Positives = 22/56 (39%)

Query: 5  ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFF 60
          +   L  +   +   P +G  AG V++ + ++WE L+ G     +          F
Sbjct: 1  SSLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDF 56

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 7e-09
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFF 60
          +    +R +  E   LT +PP+GI   P NEE+  + +  I G +   +      +    
Sbjct: 3  LPPHIIRLVYKEVTTLTADPPDGIKVFP-NEEDLTDLQVTIEGPEGTPYAGGLFRMKLLL 61

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 47.1 bits (111), Expect = 1e-08
 Identities = 21/59 (35%), Positives = 31/59 (52%)

Query: 2  AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFF 60
          + +A +RL+ E +QL  + P GI+AGP +E N F W+ LI G     +     N    F
Sbjct: 1  SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEF 59

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 2e-08
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGIIAGPVN-EENFFEWEALITGNKLYEWMPFALNLCYF 59
          MA S  +RL  E   L  +PP G+     + + +  +W   + G     +      L + 
Sbjct: 1  MA-SMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFK 59

Query: 60 F 60
          F
Sbjct: 60 F 60

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 44.7 bits (105), Expect = 8e-08
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 5  ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
          A RRLM ++K++  + P G+ A P+  +N   W A+I G
Sbjct: 4  ARRRLMRDFKRMKEDAPPGVSASPL-PDNVMVWNAMIIG 41

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 1e-07
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 4  SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFFS 61
          +A +RL  +Y ++  +P   I A P+   N  EW  ++ G ++  +     +    F 
Sbjct: 1  TATQRLKQDYLRIKKDPVPYICAEPL-PSNILEWHYVVRGPEMTPYEGGYYHGKLIFP 57

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 2e-07
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 5  ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFF 60
            +RL  E   L ++  +GI A P   +N F+W   I G     +      L   F
Sbjct: 2  VGKRLQQELMTLMMSGDKGISAFP-ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEF 56

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 4e-07
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 4  SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFF 60
             RR++ E ++L   P  GI A P +E N   +  +I G +   +      L  F 
Sbjct: 2  GLPRRIIKETQRLLAEPVPGIKAEP-DESNARYFHVVIAGPQDSPFEGGTFKLELFL 57

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.5 bits (99), Expect = 5e-07
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 1  MAGSALRRLMAEYKQLTINPPEGI--IAGPVNEENFFEWEALITGNKLYEWMPFALNLCY 58
          MA  A++R+  E+K++  +       I   + +ENF E    I G     +      L  
Sbjct: 1  MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 60

Query: 59 FFS 61
             
Sbjct: 61 KIP 63

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 42.4 bits (99), Expect = 5e-07
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 2  AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEW 49
          A S  +R++ E ++L  +P  GI A P +++N   ++  I G +   +
Sbjct: 1  AASLPKRIIKETEKLVSDPVPGITAEP-HDDNLRYFQVTIEGPEQSPY 47

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score = 41.3 bits (96), Expect = 1e-06
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 5  ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALI 41
          + RRLM ++K+L  +PP G+   P  E+N   WEA+I
Sbjct: 4  SRRRLMRDFKKLQEDPPAGVSGAP-TEDNILTWEAII 39

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 1e-06
 Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 4/78 (5%)

Query: 4  SALRRLMAEYKQLTINPPE--GIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFFS 61
           A  RLM E + +  +     GI +  +  ++ ++W   +         P   +L     
Sbjct: 4  QASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVD--PDSPLHSDLQILKE 61

Query: 62 KGNSGWYIPCLKSPSQTK 79
          K    + +          
Sbjct: 62 KEGIEYILLNFSFKDNFP 79

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 40.5 bits (94), Expect = 2e-06
 Identities = 10/54 (18%), Positives = 14/54 (25%), Gaps = 1/54 (1%)

Query: 8  RLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFFS 61
          R+  E      NPP        +  N   W     G +   +      L   F 
Sbjct: 2  RIQKELHNFLNNPPINCTLDV-HPNNIRIWIVKYVGLENTIYANEVYKLKIIFP 54

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 2e-06
 Identities = 9/62 (14%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 2  AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK-LYE--WMPFALNLCY 58
          A +A  R+  +  +L  N P+       + ++   ++ +I  ++  Y+     F+  +  
Sbjct: 1  ASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQ 58

Query: 59 FF 60
           +
Sbjct: 59 GY 60

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 3e-06
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 4  SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFF 60
          ++ +R+  E  ++T++PP    AGP   +N +EW + I G     +      L   F
Sbjct: 2  TSAKRIQKELAEITLDPPPNCSAGP-KGDNIYEWRSTILGPPGSVYEGGVFFLDITF 57

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score = 40.5 bits (94), Expect = 3e-06
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 5  ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCY 58
          AL+R+  E + L  +PP    AGPV  ++ F W+A I G     Y+   F L + +
Sbjct: 2  ALKRIQKELQDLGRDPPAQCSAGPV-GDDLFHWQATIMGPPESPYQGGVFFLTIHF 56

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 1e-05
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 4  SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNLCY 58
              RL  E   L   PP GI     +++   +  A I G  N  YE   F L +  
Sbjct: 2  QRASRLKRELHMLATEPPPGITCWQ-DKDQMDDLRAQILGGANTPYEKGVFKLEVII 57

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 6e-04
 Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 7  RRLMAEYKQLTINPPEGIIAGPV---NEENFFEWEALITG 43
           RL+ E ++      +G ++  +    +     W  +I G
Sbjct: 8  FRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIG 47

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 32.5 bits (73), Expect = 0.003
 Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 6  LRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNLCY 58
          L+R        T +   G+ A  V   +   W   I G     YE   F L++  
Sbjct: 16 LQRAHDSEPAATHSTSHGVSAQIV-GGDIHRWRGFIAGPLGTPYEGGHFTLDIVI 69

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 31.9 bits (72), Expect = 0.004
 Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 3/58 (5%)

Query: 7  RRLMAEYKQL-TINPPEGIIAGPVNEE--NFFEWEALITGNKLYEWMPFALNLCYFFS 61
           RL+ E ++      PE    G  + +     +W   I G           +L     
Sbjct: 7  FRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCG 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	90
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.77
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.76
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.74
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	99.74
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.73
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.73
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	99.73
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.73
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.73
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	99.72
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.72
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.72
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	99.71
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	99.71
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	99.69
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.69
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	99.68
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	99.68
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.67
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.67
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.66
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.64
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.64
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	99.6
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.55
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.54
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.45
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	99.4
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	99.37
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	98.08
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	95.1

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=99.77  E-value=4.2e-19  Score=117.13  Aligned_cols=69  Identities=36%  Similarity=0.573  Sum_probs=59.4

Q ss_pred             chHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCcc
Q psy10015          2 AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCL   72 (90)
Q Consensus         2 s~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~   72 (90)
                      |.+|.|||++|+++|++++++||.+.+.+++|+++|+++|.||+  +|+||.|++.|  .||++|      +.|.|+.+
T Consensus         1 s~~a~kRL~~E~~~l~~~~~~gi~~~p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i--~fp~~YP~~pP~v~f~t~i~   77 (164)
T d2ucza_           1 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKL--EFPKDYPLSPPKLTFTPSIL   77 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCCEEEESSCCS
T ss_pred             CHHHHHHHHHHHHHHhhCCCCCEEEEECCccchhhhheeeeCCCcccccCCeeEEEE--ecCCCCCCCCCeEEeecCce
Confidence            46789999999999999999999999976779999999999999  89999998887  667664      46666643

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=99.76  E-value=4.3e-19  Score=115.92  Aligned_cols=70  Identities=29%  Similarity=0.471  Sum_probs=61.7

Q ss_pred             CchHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCC------CcccccCcc
Q psy10015          1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKG------NSGWYIPCL   72 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~------~~~~~~~~~   72 (90)
                      ||+.|.+||+||+++++++++.||++.+. ++|+++|++.|.||+  +|+||.|+++|  .||++      .+.|.|+.+
T Consensus         1 m~~~a~~~L~kE~~~l~~~~~~gi~v~p~-~~n~~~W~~~i~Gp~~t~yegg~f~~~i--~fp~~YP~~pP~v~f~t~i~   77 (148)
T d1yrva1           1 MHGRAYLLLHRDFCDLKENNYKGITAKPV-SEDMMEWEVEIEGLQNSVWQGLVFQLTI--HFTSEYNYAPPVVKFITIPF   77 (148)
T ss_dssp             GGCHHHHHHHHHHHHHHHHCCTTEEEEEC-STTSCEEEEEEECCTTSTTTTCEEEEEE--ECCTTBTTBCCEEEESSCCC
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEEEEC-CCcccEEEEEEEeCCCCccCCCceEEEE--EeccccccCCceeeeccccc
Confidence            89999999999999999999999999995 679999999999998  89999998877  66655      467778866


Q ss_pred             C
Q psy10015         73 K   73 (90)
Q Consensus        73 ~   73 (90)
                      |
T Consensus        78 H   78 (148)
T d1yrva1          78 H   78 (148)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=99.74  E-value=1.6e-18  Score=112.92  Aligned_cols=69  Identities=30%  Similarity=0.534  Sum_probs=59.1

Q ss_pred             chHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          2 AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         2 s~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      |+.|.|||++|+++|+++++.||.+.+. ++|+++|++.|.||+  +|+||.|+++|  .||++|      |.|.|+.+|
T Consensus         1 st~A~kRl~~El~~l~~~~~~gi~~~p~-~~n~~~w~~~i~gp~~tpy~gg~f~~~i--~~p~~YP~~pP~v~f~t~i~H   77 (153)
T d1ayza_           1 STPARRRLMRDFKRMKEDAPPGVSASPL-PDNVMVWNAMIIGPADTPYEDGTFRLLL--EFDEEYPNKPPHVKFLSEMFH   77 (153)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCCEEEESSCCCC
T ss_pred             CCHHHHHHHHHHHHHhHCCCCCEEEEEC-CCcHHhHhheeeCCCCCccCCCEEEEEE--ecCccccCCCCeeeeccCCCc
Confidence            5678999999999999999999999995 679999999999999  89999998887  666654      566676433

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=99.74  E-value=1.8e-18  Score=112.63  Aligned_cols=69  Identities=32%  Similarity=0.607  Sum_probs=59.2

Q ss_pred             chHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          2 AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         2 s~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      |+.|.|||++|+++|++++++||.+.+. ++|+++|++.|.||+  +|+||.|+++|  .||++|      |.|.|+.+|
T Consensus         1 ~~pa~rRl~~E~~~l~~~~~~gi~~~p~-~~n~~~w~~~i~gp~~tpy~gg~f~~~i--~~p~~YP~~pP~v~f~t~i~H   77 (149)
T d1z3da1           1 TTPSRRRLMRDFKKLQEDPPAGVSGAPT-EDNILTWEAIIFGPQETPFEDGTFKLSL--EFTEEYPNKPPTVKFISKMFH   77 (149)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCCEEEESSCCCC
T ss_pred             CCHHHHHHHHHHHHHhhCCCCCEEEEEC-CCchhhhceeEECCCCccccCCEEEEEE--EecCcCCCCCcEEEecCcccc
Confidence            4578899999999999999999999995 679999999999999  89999998887  666654      577777544

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=99.73  E-value=1.7e-18  Score=113.77  Aligned_cols=67  Identities=25%  Similarity=0.398  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         4 ~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      +|.|||+||+++|++++++++++.+. ++|+++|+++|.||+  ||+||.|+++|  .||.+|      |.|.||.+|
T Consensus         1 tA~kRl~kE~~~l~~~p~~g~~~~p~-~~n~~~w~~~i~Gp~~tpy~gg~f~~~i--~fp~~YP~~pP~v~f~t~~~~   75 (157)
T d2f4wa1           1 TATQRLKQDYLRIKKDPVPYICAEPL-PSNILEWHYVVRGPEMTPYEGGYYHGKL--IFPREFPFKPPSIYMITPNGR   75 (157)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTSSCCEEEECSCCSS
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEEEc-CcccceeeeEEECCCCccccCCEEEEEE--eccCCcCCCCCEEEeeCCCcc
Confidence            37899999999999999999999995 679999999999999  89999998887  666665      467777665

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=99.73  E-value=2.8e-18  Score=111.48  Aligned_cols=68  Identities=28%  Similarity=0.544  Sum_probs=58.3

Q ss_pred             hHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          3 GSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         3 ~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      ++++|||++|+++|+++++.||.+.+. ++|++.|+++|.||+  +|+||.|+++|  .||++|      |.|.|+.+|
T Consensus         1 s~~~kRi~~E~~~l~~~~~~gi~~~~~-~~n~~~w~~~i~gp~~t~y~gg~f~~~i--~~p~~YP~~pP~v~f~t~i~H   76 (148)
T d1y6la_           1 STSAKRIQKELAEITLDPPPNCSAGPK-GDNIYEWRSTILGPPGSVYEGGVFFLDI--TFSPDYPFKPPKVTFRTRIYH   76 (148)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEES-SSCTTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTSSCCEEEESSCCCB
T ss_pred             ChHHHHHHHHHHHHhhCCCCCEEEEEC-CcccceeceEEECCCCCCcCCCeEEEEE--ecCcccCCCCcEEEEeCCCcC
Confidence            357899999999999999999999995 689999999999988  89999998887  667665      567777443

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=99.73  E-value=3.7e-18  Score=111.60  Aligned_cols=70  Identities=26%  Similarity=0.417  Sum_probs=60.3

Q ss_pred             CchHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCcc
Q psy10015          1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCL   72 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~   72 (90)
                      |+..+.|||+||+++|+++++++|.+.+ +++|+++|+++|.||+  ||+||.|++.|  .||++|      |.|.||.+
T Consensus         3 ~~~~~~kRl~kEl~~l~~~~~~gi~v~p-~~~dl~~w~~~i~gp~~tpy~gg~f~~~i--~fp~~YP~~pP~v~f~t~i~   79 (151)
T d1zdna1           3 LPPHIIRLVYKEVTTLTADPPDGIKVFP-NEEDLTDLQVTIEGPEGTPYAGGLFRMKL--LLGKDFPASPPKGYFLTKIF   79 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHSCCTTEEEEE-CSSCTTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCCEEEESSCCC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCeEEEE-cCcchheeEEEEecCCCcCccCCceeeee--ecCCCCCCCCceeecCCCCC
Confidence            6778999999999999999999999998 4789999999999999  89999998887  666664      56777744


Q ss_pred             C
Q psy10015         73 K   73 (90)
Q Consensus        73 ~   73 (90)
                      |
T Consensus        80 H   80 (151)
T d1zdna1          80 H   80 (151)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=99.73  E-value=2.6e-18  Score=109.13  Aligned_cols=65  Identities=31%  Similarity=0.510  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          7 RRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         7 rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      -||+||+++++++++++|++.+.+++|+++|++.|.||+  ||+||.|+++|  .||++|      |.|.||++|
T Consensus         2 ~~L~kEl~~l~~~~~~gi~~~~~~~~dl~~w~~~i~Gp~~tpyegg~f~~~i--~fp~~YP~~pP~v~f~t~i~H   74 (125)
T d2awfa1           2 LLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHL--TFPKDYPLRPPKMKFITEIWH   74 (125)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTSSCCEEEECSCCCC
T ss_pred             chHHHHHHHHHhCCCCCEEEEeCCCCCceEEEEEEeCCCCcccCCCeeEEEE--ecCCCcCCCCCeEEecCCCCc
Confidence            489999999999999999999877779999999999999  89999998876  777775      577788655

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=99.73  E-value=2.8e-18  Score=111.61  Aligned_cols=64  Identities=17%  Similarity=0.221  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccC
Q psy10015          5 ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIP   70 (90)
Q Consensus         5 a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~   70 (90)
                      ++|||++|+++|++++++||++.+.+++|+++|+++|.||+  +|+||.|++.|  .||++|      +.|.|+
T Consensus         2 ~~kRL~~El~~l~~~~~~gi~~~~~~~~~~~~w~~~I~gp~~t~y~gg~f~~~i--~fp~~YP~~pP~v~f~t~   73 (149)
T d1fzya_           2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDI--EVPMEYPFKPPKMQFDTK   73 (149)
T ss_dssp             HHHHHHHHHHHHHTCGGGCEEEEESCSSCSSEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCchhEEEEEEEcCCCCCCCCCceeEEE--EecCCcccCCcEEEecCC
Confidence            57999999999999999999998767789999999999999  89999998887  677665      455565

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.6e-18  Score=108.92  Aligned_cols=74  Identities=26%  Similarity=0.346  Sum_probs=59.1

Q ss_pred             CchHHHHHHHHHHHHhhhCCCCCEEEeec-CCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCc
Q psy10015          1 MAGSALRRLMAEYKQLTINPPEGIIAGPV-NEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPC   71 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~-~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~   71 (90)
                      |++ +.|||+||+++|++++++++.+.+. +++|+++|++.|.||+  ||+||.|+++|  .||++|      |.|.|++
T Consensus         1 m~~-~~kRL~kEl~~l~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i--~fp~~YP~~pP~v~F~t~~   77 (117)
T d2a7la1           1 MAS-MQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLF--KFSSRYPFDSPQVMFTGEN   77 (117)
T ss_dssp             GTT-SCHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEE--EECTTTTTSCCEEEEESSC
T ss_pred             CCc-HHHHHHHHHHHHhhCCCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEE--ecCcccccCCCEEEEeCCC
Confidence            666 4699999999999999999988652 3568999999999999  89999998887  666654      5777775


Q ss_pred             c-CCCch
Q psy10015         72 L-KSPSQ   77 (90)
Q Consensus        72 ~-~~~~~   77 (90)
                      . ++|+.
T Consensus        78 ~~~Hpnv   84 (117)
T d2a7la1          78 IPVHPHV   84 (117)
T ss_dssp             CCCBTTB
T ss_pred             ccccccC
Confidence            3 44543

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=99.72  E-value=5.6e-18  Score=110.49  Aligned_cols=66  Identities=24%  Similarity=0.341  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          5 ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         5 a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      +++||+||+++|++++++||.+.+. ++|+++|+++|.||+  ||+||.|++.|  .||++|      |.|.||++|
T Consensus         3 ~~~Rl~kE~~~l~~~~~~gi~~~p~-~~~~~~w~~~I~Gp~~TpY~gg~f~~~i--~~p~~YP~~pP~v~f~t~i~H   76 (154)
T d1yh2a1           3 RASRLKRELHMLATEPPPGITCWQD-KDQMDDLRAQILGGANTPYEKGVFKLEV--IIPERYPFEPPQIRFLTPIYH   76 (154)
T ss_dssp             HHHHHHHHHHHHHHSCCTTEEEEES-SSCTTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTSSCCEEEESSCCCB
T ss_pred             HHHHHHHHHHHHHHCcCCCEEEEEC-CcchhhhhceEeCCCCCCCCCCEEEEEE--ecCccccCCCceeeccCCCCc
Confidence            6799999999999999999999995 789999999999999  89999998887  667664      567777544

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=99.72  E-value=1.6e-18  Score=113.46  Aligned_cols=68  Identities=25%  Similarity=0.409  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          3 GSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         3 ~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      +.+.|||++|+++|++++++||.+.+. ++|+++|++.|.||+  +|+||.|+++|  .||.+|      |.|.|+.+|
T Consensus         2 ~~~~rRl~~E~~~l~~~~~~g~~~~p~-~~n~~~w~~~i~gp~~t~y~gg~f~~~i--~fp~~YP~~pP~v~F~t~i~H   77 (152)
T d1jata_           2 ASLPKRIIKETEKLVSDPVPGITAEPH-DDNLRYFQVTIEGPEQSPYEDGIFELEL--YLPDDYPMEAPKVRFLTKIYH   77 (152)
T ss_dssp             CSCCHHHHHHHHHHHHSCCTTEEEEEE-TTEEEEEEEEEECCTTSTTTTEEEEEEE--ECCTTTTTSCCEEEECSCCCB
T ss_pred             CcHHHHHHHHHHHHHhCCCCCEEEEEc-CCccchhheeeeCCchhhhcCCEEEEEE--ecCccCCCCCcEEEecCCCCC
Confidence            446799999999999999999999995 689999999999999  89999998877  677665      566666444

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=99.71  E-value=5.9e-18  Score=109.57  Aligned_cols=66  Identities=30%  Similarity=0.553  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          5 ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         5 a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      |.|||++|+++|+++++.+|++.+. ++|+++|++.|.||+  +|+||.|+++|  .||++|      |.|.||.+|
T Consensus         2 a~kRL~~E~~~l~~~~~~~i~~~~~-~~n~~~w~~~i~gp~~t~y~gg~f~~~i--~fp~~YP~~pP~v~f~t~i~H   75 (147)
T d1z2ua1           2 ALKRIQKELQDLGRDPPAQCSAGPV-GDDLFHWQATIMGPPESPYQGGVFFLTI--HFPTDYPFKPPKVAFTTRIYH   75 (147)
T ss_dssp             HHHHHHHHHHHHHHSCCSSEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTSSCCEEEESSCCCB
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEEC-CCchhhhhheecCCCCCCcCCCceEEEE--ecCcCCCCCCceEEEecCCce
Confidence            6899999999999999999999995 679999999999998  99999998887  677665      466666443

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=99.71  E-value=6.2e-18  Score=111.12  Aligned_cols=67  Identities=33%  Similarity=0.615  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         4 ~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      ++.|||+||+++|++++++||.+.| +++|+++|++.|.||+  +|+||.|+++|  .||++|      +.|.|+++|
T Consensus         9 ~~~kRl~kEl~~l~~~~~~gi~~~p-~~~dl~~W~~~i~Gp~~t~yegg~f~~~i--~fp~~YP~~pP~v~f~t~i~H   83 (156)
T d2e2ca_           9 SVSKRLQQELRTLLMSGDPGITAFP-DGDNLFKWVATLDGPKDTVYESLKYKLTL--EFPSDYPYKPPVVKFTTPCWH   83 (156)
T ss_dssp             CHHHHHHHHHHHHHHHCCTTEEEEE-SSSCTTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTSSCCEEEESSCCCB
T ss_pred             hHHHHHHHHHHHHhHCCCCCEEEEE-CCCcccEEEEEEEcCCccccCCCEEEEEE--EecCCCCCCCceeeccccCcC
Confidence            5689999999999999999999999 5789999999999999  89999998876  677665      456666444

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=2.2e-17  Score=107.96  Aligned_cols=70  Identities=24%  Similarity=0.314  Sum_probs=59.2

Q ss_pred             CchHHHHHHHHHHHHhhhCC---CCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------ccccc
Q psy10015          1 MAGSALRRLMAEYKQLTINP---PEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYI   69 (90)
Q Consensus         1 Ms~~a~rRL~kEl~~l~~~~---~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~   69 (90)
                      ||+.|.+||+||++++++++   ..+|.+.+. ++|+++|++.|.||+  ||+||.|+++|  .||++|      |.|.|
T Consensus         1 Ms~~a~~Rl~kE~~~l~~~~~~~~~~i~~~~~-~~n~~~w~~~i~gp~~tpy~gg~f~~~i--~fp~~YP~~pP~v~f~t   77 (154)
T d2bepa1           1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLEI--KIPETYPFNPPKVRFIT   77 (154)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEEC-SSSSSEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTSSCCEEEESS
T ss_pred             CchHHHHHHHHHHHHHHHCCCCCCCcEEEEcC-CCChhheEeeEecCccccccCCeeEEEE--eccccccCCCCcceecc
Confidence            99999999999999998764   578999985 679999999999999  89999998887  666654      57777


Q ss_pred             CccC
Q psy10015         70 PCLK   73 (90)
Q Consensus        70 ~~~~   73 (90)
                      |.+|
T Consensus        78 ~i~H   81 (154)
T d2bepa1          78 KIWH   81 (154)
T ss_dssp             CCCB
T ss_pred             cCCC
Confidence            7544

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=99.69  E-value=1.9e-17  Score=107.74  Aligned_cols=66  Identities=27%  Similarity=0.421  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          5 ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         5 a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      ..|||+||+++|+++++.||.+.+ +++|+++|+++|.||+  +|+||.|+++|  .||++|      |.|.||.+|
T Consensus         3 ~~kRl~kEl~~l~~~~~~gi~~~p-~~~n~~~w~~~i~gp~~tpy~gg~f~~~i--~fp~~YP~~pP~v~f~t~i~H   76 (149)
T d1j7db_           3 LPRRIIKETQRLLAEPVPGIKAEP-DESNARYFHVVIAGPQDSPFEGGTFKLEL--FLPEEYPMAAPKVRFMTKIYH   76 (149)
T ss_dssp             SCHHHHHHHHHHTTSCCTTEEEEE-CSSCTTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCCEEEECSCCCB
T ss_pred             ccHHHHHHHHHHHhCCCCCEEEEE-CCCcccEeeeEEECCcccccCCCEEEEEE--ecCCcccCCCceeeecCCCCC
Confidence            358999999999999999999999 4789999999999998  89999998887  666654      566677544

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=99.68  E-value=4.1e-17  Score=101.57  Aligned_cols=65  Identities=18%  Similarity=0.268  Sum_probs=55.0

Q ss_pred             HHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccCCC
Q psy10015          8 RLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLKSP   75 (90)
Q Consensus         8 RL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~~~   75 (90)
                      ||+||+++++++++++|.+.+ +++|+++|++.|.||+  +|+||.|++++  .||++|      +.|.|+.+++|
T Consensus         2 Rl~kEl~~l~~~~~~g~~~~~-~~~~~~~w~~~i~gp~~tpy~gg~f~~~i--~fp~~YP~~pP~v~F~t~~~~hp   74 (109)
T d2fo3a1           2 RIQKELHNFLNNPPINCTLDV-HPNNIRIWIVKYVGLENTIYANEVYKLKI--IFPDDYPLKPPIVYFLQKPPKHT   74 (109)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEE-CTTCTTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCCEEEECSSCCCBT
T ss_pred             HHHHHHHHHHhCCCCCEEEEE-cCCcccEEEEEEecCchhhhcCCCceEEE--EeccccCCCCCeEEEEeccccCc
Confidence            899999999999999999998 5789999999999999  89999998876  777775      45666543443

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=99.68  E-value=2.5e-17  Score=108.29  Aligned_cols=66  Identities=24%  Similarity=0.390  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          6 LRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         6 ~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      ..||+||+++|++++++||++.+.+++|+++|+++|.||+  +|+||.|++.|  .||++|      |.|.||.+|
T Consensus         2 ~~~L~kE~~~l~~~~~~g~~v~~~~~~dl~~W~~~i~gp~~tpY~gg~f~~~i--~fp~~YP~~pP~v~f~t~i~H   75 (161)
T d1pzva_           2 SLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAIL--DFPRDYPQKPPKMKFISEIWH   75 (161)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSSCSSCEEEEEE--ECCTTGGGSCCEEEECSCCCC
T ss_pred             ChHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCcchhhcCCEEEEEE--eCCCCCCCCCCeEEecCCCCC
Confidence            4699999999999999999999876778999999999998  99999998887  566554      577787543

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=99.67  E-value=2.5e-17  Score=107.13  Aligned_cols=66  Identities=32%  Similarity=0.588  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          5 ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         5 a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      ++|||++|+++|+++++++|.+.+. ++|+++|++.|.||+  +|+||.|+++|  .||++|      |.|.||++|
T Consensus         2 ~~kRl~~El~~l~~~~~~~i~~~~~-~~d~~~w~~~i~gp~~tpy~gg~f~~~i--~fp~~YP~~pP~v~f~t~i~H   75 (146)
T d1i7ka_           2 VGKRLQQELMTLMMSGDKGISAFPE-SDNLFKWVGTIHGAAGTVYEDLRYKLSL--EFPSGYPYNAPTVKFLTPCYH   75 (146)
T ss_dssp             HHHHHHHHHHHHHHHCCTTEEEEEE-TTEEEEEEEEEEBCTTSTTBTCEEEEEE--ECCTTTTTSCCEEEESSCCCS
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEEc-CCcccEEEEEEecCccccccCCEEEEEE--EecCCCCcCCceeeecCCCCc
Confidence            6799999999999999999999985 679999999999999  89999998887  666554      577788655

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=99.67  E-value=1e-17  Score=108.49  Aligned_cols=65  Identities=22%  Similarity=0.320  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          6 LRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         6 ~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      +|||++|+++|++++..++.+.+.+++|+++|++.| ||+  ||+||.|+++|  .||++|      |.|.||.+|
T Consensus         1 ~rRl~kEl~~l~~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpY~gg~f~~~i--~fp~~YP~~pP~v~f~t~i~H   73 (144)
T d1c4zd_           1 SRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEI--NFPAEYPFKPPKITFKTKIYH   73 (144)
T ss_dssp             CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEE-CCCSSSCCSCCEEEEE--ECCTTTTTSCCEEEESSCCCC
T ss_pred             CHHHHHHHHHHHhCCCCCeEEEECCCCcceEEEEEE-CCCCcCccCCEEEEEE--EecCcccCCCceeeccCCCCC
Confidence            389999999999999999998887778999999998 998  99999998877  777765      466666443

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=99.66  E-value=5.4e-17  Score=106.50  Aligned_cols=68  Identities=31%  Similarity=0.489  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHhhhCCCCCEEEeecCC----CCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCc
Q psy10015          4 SALRRLMAEYKQLTINPPEGIIAGPVNE----ENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPC   71 (90)
Q Consensus         4 ~a~rRL~kEl~~l~~~~~~~i~~~p~~~----~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~   71 (90)
                      .|.+||+||+++|+++++.|+.+.|..+    +|+++|+++|.||+  ||+||.|+++|  .||++|      |.|.||.
T Consensus         2 ~a~~Rl~~E~~~~~~~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i--~fp~~YP~~pP~v~f~t~i   79 (156)
T d2uyza1           2 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM--LFKDDYPSSPPKCKFEPPL   79 (156)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTSSCCEEEESSCC
T ss_pred             hHHHHHHHHHHHHHHCCCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEE--eCCccccCCCceeeecccc
Confidence            3789999999999999999999988522    38999999999999  89999998887  666664      5677774


Q ss_pred             cC
Q psy10015         72 LK   73 (90)
Q Consensus        72 ~~   73 (90)
                      +|
T Consensus        80 ~H   81 (156)
T d2uyza1          80 FH   81 (156)
T ss_dssp             CS
T ss_pred             cc
Confidence            44

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=99.64  E-value=6.8e-17  Score=105.02  Aligned_cols=66  Identities=21%  Similarity=0.331  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          5 ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         5 a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      |.+||+||+++|+++++++|.+.+.+++|+..|.+.| ||+  ||+||.|+++|  .||++|      |.|.||++|
T Consensus         1 a~~Rl~kE~~~l~~~~p~gi~~~~~~~~~~~~w~~ii-gp~~tpy~gg~f~~~i--~fp~~YP~~pP~v~f~t~i~H   74 (150)
T d1wzva1           1 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRI--SFPPEYPFKPPMIKFTTKIYH   74 (150)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEE-CCCSTTGGGEEEEEEE--ECCTTTTSSCCEEEESSCCCB
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEecCCCceEEEEEEE-CCCCCCccCceeeEEE--ecCcCCccCCceeeccCCCCc
Confidence            4689999999999999999999987777999999876 777  99999998876  667664      577777655

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=99.64  E-value=1.7e-16  Score=102.54  Aligned_cols=68  Identities=15%  Similarity=0.227  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHhhhCCCCCEEEeec---CCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCcc
Q psy10015          4 SALRRLMAEYKQLTINPPEGIIAGPV---NEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCL   72 (90)
Q Consensus         4 ~a~rRL~kEl~~l~~~~~~~i~~~p~---~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~   72 (90)
                      .+.+||+||++++++++++++.+...   +++|+++|++.|.||+  +|+||.|+++|  .||++|      |.|.||.+
T Consensus         5 ~r~~RL~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i--~fp~~YP~~pP~v~F~t~i~   82 (139)
T d2a4da1           5 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKI--ECGPKYPEAPPFVRFVTKIN   82 (139)
T ss_dssp             HHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCCEEEESBCCC
T ss_pred             chhHHHHHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEE--ECCCCCCCCCCEEEEecCcc
Confidence            35799999999999999888666543   2347999999999999  99999998887  677665      57777754


Q ss_pred             C
Q psy10015         73 K   73 (90)
Q Consensus        73 ~   73 (90)
                      |
T Consensus        83 H   83 (139)
T d2a4da1          83 M   83 (139)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.60  E-value=6.8e-16  Score=101.70  Aligned_cols=67  Identities=19%  Similarity=0.338  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHhhh-------------CCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC-----
Q psy10015          5 ALRRLMAEYKQLTI-------------NPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN-----   64 (90)
Q Consensus         5 a~rRL~kEl~~l~~-------------~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~-----   64 (90)
                      ..+||+||+++|++             +...|+++.++ ++|+++|+++|.||+  ||+||.|+++|  .||++|     
T Consensus         2 ~~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~nl~~W~~~I~Gp~~TpY~gg~f~~~i--~fp~~YP~~pP   78 (161)
T d2f4za1           2 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIV-GGDIHRWRGFIAGPLGTPYEGGHFTLDI--VIPPDYPYNPP   78 (161)
T ss_dssp             HHHHHHHHHHHHHHC----------------CEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCC
T ss_pred             chhHHHHHHHHHHHHhhccccCcccccCCCCCeEEEec-CCccceeEEEEeCCCCCccCCCEEEEEE--eccCCCCCCCc
Confidence            46899999999966             34568999997 579999999999999  89999998887  666664     


Q ss_pred             -cccccCccCC
Q psy10015         65 -SGWYIPCLKS   74 (90)
Q Consensus        65 -~~~~~~~~~~   74 (90)
                       |.|.||.+|+
T Consensus        79 ~V~F~t~i~HP   89 (161)
T d2f4za1          79 KMKFVTKIWHP   89 (161)
T ss_dssp             EEEESSCCCBT
T ss_pred             EEEecCCCCCC
Confidence             5777886653

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=99.55  E-value=5e-15  Score=95.37  Aligned_cols=68  Identities=16%  Similarity=0.153  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHhhhCC-CCCEEEeecCCC--CceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCcc
Q psy10015          4 SALRRLMAEYKQLTINP-PEGIIAGPVNEE--NFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCL   72 (90)
Q Consensus         4 ~a~rRL~kEl~~l~~~~-~~~i~~~p~~~~--nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~   72 (90)
                      .+..||+|||++++++. +.++++...++|  |+++|++.|.||+  +|+||.|++.|  .||++|      |.|.||++
T Consensus         4 p~~~RL~kEl~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i--~fp~~YP~~PP~v~f~t~i~   81 (136)
T d1jatb_           4 PRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSI--DCGPNYPDSPPKVTFISKIN   81 (136)
T ss_dssp             CHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEE--ECCTTTTTSCCEEEESBCCC
T ss_pred             chHHHHHHHHHHHhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEE--EecCCCCCCCCEEEEecccc
Confidence            35789999999999986 456776665444  5999999999999  89999998877  677665      57778755


Q ss_pred             C
Q psy10015         73 K   73 (90)
Q Consensus        73 ~   73 (90)
                      |
T Consensus        82 H   82 (136)
T d1jatb_          82 L   82 (136)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=99.54  E-value=3.8e-15  Score=97.65  Aligned_cols=67  Identities=12%  Similarity=0.197  Sum_probs=52.5

Q ss_pred             chHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          2 AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         2 s~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      |++|.+||+||+++|+.+  +++.+...+++|+++|++.| ||+  +|+||.|+++|  .||++|      |.|.++.+|
T Consensus         1 ~~~a~~Rl~kEl~~l~~~--~~~~i~~~~~~~l~~w~~~i-~p~~t~Y~gg~f~~~i--~fp~~YP~~pP~V~f~t~i~H   75 (157)
T d1y8xa1           1 ASAAQLRIQKDINELNLP--KTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSF--KVGQGYPHDPPKVKCETMVYH   75 (157)
T ss_dssp             CCHHHHHHHHHHHTCCCC--TTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEE--ECCTTTTTSCCEEEECSCCCB
T ss_pred             CCHHHHHHHHHHHHhCCC--CCCcEEEcCCCcceEEEEEE-CCCCCCcCCCeEEEEE--EecCCCCCCCceeeecccCCC
Confidence            578999999999999754  45566555678999999988 777  89999998887  666664      566677554

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.7e-14  Score=94.76  Aligned_cols=71  Identities=17%  Similarity=0.286  Sum_probs=54.0

Q ss_pred             chHHHHHHHHHHHHhhhCCC--CC-EEEeecCCCCceEEEEEEec-cC--CCCCCe-----------EEEEEEEEecCCC
Q psy10015          2 AGSALRRLMAEYKQLTINPP--EG-IIAGPVNEENFFEWEALITG-NK--LYEWMP-----------FALNLCYFFSKGN   64 (90)
Q Consensus         2 s~~a~rRL~kEl~~l~~~~~--~~-i~~~p~~~~nl~~w~~~I~G-P~--~Yegg~-----------f~l~i~i~f~~~~   64 (90)
                      |..|.+||+||++++++++.  .+ +.+.+. +||+++|++.|.| |+  +|++|.           |+++|  .||++|
T Consensus         2 s~~a~~RL~kEl~~l~k~~~~~~~~~~v~~~-~dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i--~fp~~Y   78 (162)
T d1zuoa1           2 SVQASDRLMKELRDIYRSQSYKTGIYSVELI-NDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNF--SFKDNF   78 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHTTSEEEEEE-TTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEE--ECCTTT
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCeEEeecC-CCcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEE--ECCCch
Confidence            56789999999999998764  33 566664 6799999999999 44  798875           76665  667665


Q ss_pred             ------cccccCccCCC
Q psy10015         65 ------SGWYIPCLKSP   75 (90)
Q Consensus        65 ------~~~~~~~~~~~   75 (90)
                            |.|.||++|+.
T Consensus        79 P~~PP~v~f~t~i~hpn   95 (162)
T d1zuoa1          79 PFDPPFVRVVLPVLSGG   95 (162)
T ss_dssp             TSSCCEEEEEESCEEST
T ss_pred             hhhcceEEEEEEeeccc
Confidence                  57778877654

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=99.37  E-value=2.5e-13  Score=89.01  Aligned_cols=61  Identities=20%  Similarity=0.242  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015          6 LRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK   73 (90)
Q Consensus         6 ~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~   73 (90)
                      .|||++|+++|.+++..   +.+  .||+++|++.|.||+  ||+||.|++.|  .||++|      |.|.|+++|
T Consensus         2 ~rr~~~e~~~l~~~~~~---~~~--~d~~~~w~v~i~Gp~~TpY~gg~f~~~i--~fp~~YP~~pP~v~F~t~i~H   70 (158)
T d1yf9a1           2 NRRREMDYMRLCNSTRK---VYP--SDTVAEFWVEFKGPEGTPYEDGTWMLHV--QLPSDYPFKSPSIGFCNRILH   70 (158)
T ss_dssp             CHHHHHHHHHHHSSSSC---EEE--CSSTTEEEEEEECCTTSTTTTCEEEEEE--ECCTTTTTSCCEEEESSCCCB
T ss_pred             chHHHHHHHHHhcCCCc---CCC--CCCceEEEEEEECCCCCCccCcEEEEEE--ECcccchhhceeEEecCCCCC
Confidence            48999999999987754   455  369999999999999  99999998877  666654      577788666

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=4.8e-06  Score=52.58  Aligned_cols=57  Identities=9%  Similarity=0.001  Sum_probs=44.8

Q ss_pred             HHHHHHHHHhhhCCC---CCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC
Q psy10015          7 RRLMAEYKQLTINPP---EGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN   64 (90)
Q Consensus         7 rRL~kEl~~l~~~~~---~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~   64 (90)
                      .+..+|+.++.+.-+   +...+.. .+|+...|.+.|.|+.  +|+||.|.+.|.+-||.+|
T Consensus        17 ~~~~~d~~~~l~~~~~l~p~~~~f~-~~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~Y   78 (141)
T d1s1qa_          17 DLTVRETVNVITLYKDLKPVLDSYV-FNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTY   78 (141)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEEEEE-CTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             hhHHHHHHHHHHhCCCCCCccceEE-eCCCCceEEEEEECCCCcccCCCEEEEEEEEECCccC
Confidence            456677777765433   4455555 3678999999999999  7999999999999999997

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.10  E-value=0.037  Score=34.43  Aligned_cols=58  Identities=9%  Similarity=-0.111  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHhhhCCC---CCEEEeecCCCCceEEEEEEeccC--CCCCCe-EEEEEEEEecCCC
Q psy10015          6 LRRLMAEYKQLTINPP---EGIIAGPVNEENFFEWEALITGNK--LYEWMP-FALNLCYFFSKGN   64 (90)
Q Consensus         6 ~rRL~kEl~~l~~~~~---~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~-f~l~i~i~f~~~~   64 (90)
                      .+|+.+|..++.++-+   +...... .+|....+-+.+.|.-  +|+|+. |.+.+.+-||++|
T Consensus        21 ~~~v~~dv~~~l~~y~~L~p~~~~~~-~~dg~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~Y   84 (152)
T d1uzxa_          21 GRTTFHDSLALLDNFHSLRPRTRVFT-HSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMY   84 (152)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEE-CTTSCEEEEEEEEEEECCC-------CEEEEEECCTTT
T ss_pred             cchHHHHHHHHHHhCCCCCcccceee-cCCCCcceEEEEEcccccccCCCceeEEEEEEEcCCCC
Confidence            5688888888876533   2233333 2455666777777766  799996 8888888999997