Psyllid ID: psy10035

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGDSSTLPGETLNVCWSVLKHALHPSLQL
Secondary Structure (PSIPRED)
ccccHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccEHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHcHHHHHHHHHHHHHHHHccHccc
Coil and Loop (DISEMBL)
mvldldlfrtekggdpekvrKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEkmkakepvgdsstlpgetLNVCWSVLkhalhpslql
Flexible Loop (DISEMBL)
mvldldlfrtekggdpekvrknqkdrfknvelvDKVIENDLKwrqfrhkadnfnkfKNLCSKVIGEKMKakepvgdsstlpgETLNVCWSVLKHalhpslql
Low Complexity Region (SEG)
MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGDSSTLPGETLNVCWSVLKHALHPSLQL
Disordered region (IsUnstruct)
**************************FKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIG****************GETLNVCWSVLKHAL******
Disordered Region (DISOPRED)
MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADN*N*****************************************LHP****
Disordered Region (DISEMBL)
MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGDSSTLPGETLNVCWSVLKHALHPSLQL
Disordered Region (DISPRO)
MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGDSSTLPGETLNVCWSVLKHALHP*L**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGDSSTLPGETLNVCWSVLKHALHPSLQL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	102	2.2.26 [Sep-21-2011]
Q9GMB8	514	Serine--tRNA ligase, cyto	yes	N/A	0.852	0.169	0.586	8e-25
Q6P799	512	Serine--tRNA ligase, cyto	yes	N/A	0.843	0.167	0.593	1e-24
Q5R9K9	514	Serine--tRNA ligase, cyto	yes	N/A	0.843	0.167	0.593	3e-24
P49591	514	Serine--tRNA ligase, cyto	yes	N/A	0.843	0.167	0.593	3e-24
P26638	512	Serine--tRNA ligase, cyto	yes	N/A	0.843	0.167	0.593	8e-24
Q4R4U9	514	Serine--tRNA ligase, cyto	N/A	N/A	0.843	0.167	0.593	8e-24
Q18678	487	Probable serine--tRNA lig	yes	N/A	0.784	0.164	0.612	3e-21
O14018	450	Serine--tRNA ligase, cyto	yes	N/A	0.745	0.168	0.493	1e-11
Q9HGT6	462	Serine--tRNA ligase, cyto	N/A	N/A	0.735	0.162	0.44	5e-10
Q39230	451	Serine--tRNA ligase OS=Ar	yes	N/A	0.666	0.150	0.449	1e-09

>sp|Q9GMB8|SYSC_BOVIN Serine--tRNA ligase, cytoplasmic OS=Bos taurus GN=SARS PE=2 SV=3

 Score =  112 bits (279), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 51/87 (58%), Positives = 69/87 (79%)

Query: 1  MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
          MVLDLDLFR +KGGDP  +R++Q+ RFK+  LVD++++ D +WR+ R +ADN NK KNLC
Sbjct: 1  MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60

Query: 61 SKVIGEKMKAKEPVGDSSTLPGETLNV 87
          SK IGEKMK KEPVG+  ++P + LN+
Sbjct: 61 SKTIGEKMKKKEPVGNDESIPEDVLNL 87

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).
Bos taurus (taxid: 9913)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1

>sp|Q6P799|SYSC_RAT Serine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Sars PE=1 SV=3

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 67/86 (77%)

Query: 1  MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
          MVLDLDLFR +KGGDP  +R+ Q+ RFK+  LVD++++ D +WR+ R +ADN NK KNLC
Sbjct: 1  MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60

Query: 61 SKVIGEKMKAKEPVGDSSTLPGETLN 86
          SK IGEKMK KEPVG+  ++P + LN
Sbjct: 61 SKTIGEKMKKKEPVGEDESIPEDVLN 86

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q5R9K9|SYSC_PONAB Serine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=SARS PE=2 SV=3

 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 66/86 (76%)

Query: 1  MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
          MVLDLDLFR +KGGDP  +R+ Q+ RFK+  LVD++++ D +WR+ R +ADN NK KNLC
Sbjct: 1  MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60

Query: 61 SKVIGEKMKAKEPVGDSSTLPGETLN 86
          SK IGEKMK KEPVGD  ++P   L+
Sbjct: 61 SKTIGEKMKKKEPVGDDESVPENVLS 86

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|P49591|SYSC_HUMAN Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=1 SV=3

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 66/86 (76%)

Query: 1  MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
          MVLDLDLFR +KGGDP  +R+ Q+ RFK+  LVD++++ D +WR+ R +ADN NK KNLC
Sbjct: 1  MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60

Query: 61 SKVIGEKMKAKEPVGDSSTLPGETLN 86
          SK IGEKMK KEPVGD  ++P   L+
Sbjct: 61 SKTIGEKMKKKEPVGDDESVPENVLS 86

Catalyzes the attachment of serine to tRNA(Ser). Is also probably able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|P26638|SYSC_MOUSE Serine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Sars PE=2 SV=3

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 65/86 (75%)

Query: 1  MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
          MVLDLDLFR +KGGDP  +R+ Q+ RFK+  LVD++++ D +WR+ R +ADN NK KNLC
Sbjct: 1  MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60

Query: 61 SKVIGEKMKAKEPVGDSSTLPGETLN 86
          SK IGEKMK KE VGD  ++P   LN
Sbjct: 61 SKTIGEKMKKKEAVGDDESVPENVLN 86

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q4R4U9|SYSC_MACFA Serine--tRNA ligase, cytoplasmic OS=Macaca fascicularis GN=SARS PE=2 SV=3

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 65/86 (75%)

Query: 1  MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
          MVLDLDLFR +KGGDP  +R+ Q+ RFK+  LVD++++ D +WR+ R +ADN NK KNLC
Sbjct: 1  MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60

Query: 61 SKVIGEKMKAKEPVGDSSTLPGETLN 86
          SK IGEKMK KEPV D  ++P   LN
Sbjct: 61 SKTIGEKMKKKEPVEDDESVPENVLN 86

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Macaca fascicularis (taxid: 9541)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q18678|SYSC_CAEEL Probable serine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=srs-2 PE=3 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/80 (61%), Positives = 62/80 (77%)

Query: 1  MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
          MVLD+D+FRTEKGG+PE +RK+Q+DRFK+ +LVD+VIE D KWR+ R  AD  N+ KN  
Sbjct: 1  MVLDIDMFRTEKGGNPEIIRKSQQDRFKDPKLVDEVIELDEKWRKERFVADQLNRQKNAI 60

Query: 61 SKVIGEKMKAKEPVGDSSTL 80
          SK IGEKMK KEP G   ++
Sbjct: 61 SKAIGEKMKKKEPQGTDDSV 80

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|O14018|SYSC_SCHPO Serine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC29A4.15 PE=3 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 53/79 (67%), Gaps = 3/79 (3%)

Query: 2  VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
          +LD++LF+ EKGG+PE +R++Q+ R  +V +VDKVIE   +W   R + DN NK  N   
Sbjct: 1  MLDINLFQVEKGGNPEIIRESQRKRGADVGVVDKVIEMYKEWVSLRFELDNTNKSINRVQ 60

Query: 62 KVIGEKMKAKEPVGDSSTL 80
          K IG KMKAKE   D+S L
Sbjct: 61 KEIGLKMKAKE---DASEL 76

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q9HGT6|SYSC_CANAL Serine--tRNA ligase, cytoplasmic OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SES1 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 46/75 (61%)

Query: 2  VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
          +LD++ F  EKGGDPE ++ +QK R  +VELVD++I    +W + R   D  NK  N   
Sbjct: 1  MLDINAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQ 60

Query: 62 KVIGEKMKAKEPVGD 76
          K IG++ KAKE   D
Sbjct: 61 KEIGKRFKAKEDAKD 75

Catalyzes the attachment of serine to tRNA(Ser). Is also probably able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q39230|SYS_ARATH Serine--tRNA ligase OS=Arabidopsis thaliana GN=At5g27470 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 50/69 (72%), Gaps = 1/69 (1%)

Query: 2  VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNK-FKNLC 60
          +LD++LFR EKG +PE +R++Q+ RF +VE+VD++I+ D +WRQ + + D+F K F  L 
Sbjct: 1  MLDINLFREEKGNNPEIIRESQRRRFASVEIVDEIIKLDKEWRQRQFEVDSFRKEFNKLN 60

Query: 61 SKVIGEKMK 69
           +V   K+K
Sbjct: 61 KQVAQLKIK 69

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
322792298	493	hypothetical protein SINV_03374 [Solenop	0.794	0.164	0.728	3e-27
307213057	493	Seryl-tRNA synthetase, cytoplasmic [Harp	0.794	0.164	0.740	5e-27
91086675	499	PREDICTED: similar to seryl-tRNA synthet	0.764	0.156	0.730	1e-26
270010395	529	hypothetical protein TcasGA2_TC009786 [T	0.764	0.147	0.730	1e-26
156552806	494	PREDICTED: seryl-tRNA synthetase, cytopl	0.794	0.163	0.728	1e-26
307180360	493	Seryl-tRNA synthetase, cytoplasmic [Camp	0.794	0.164	0.716	2e-26
289743367	495	seryl-tRNA synthetase [Glossina morsitan	0.813	0.167	0.690	2e-26
51468022	515	seryl-tRNA synthetase, cytoplasmic [Dani	0.852	0.168	0.666	2e-26
125986127	501	GA14420 [Drosophila pseudoobscura pseudo	0.960	0.195	0.606	3e-26
332025907	493	Seryl-tRNA synthetase, cytoplasmic [Acro	0.745	0.154	0.763	3e-26

>gi|322792298|gb|EFZ16282.1| hypothetical protein SINV_03374 [Solenopsis invicta]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/81 (72%), Positives = 66/81 (81%)

Query: 1  MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
          MVLDLD FR +KG DPEK+R NQK RFK+V+LVD VIE D  WRQ RH+ADNFNK KNLC
Sbjct: 1  MVLDLDFFRKDKGFDPEKIRDNQKKRFKDVQLVDTVIEKDKYWRQLRHRADNFNKLKNLC 60

Query: 61 SKVIGEKMKAKEPVGDSSTLP 81
          SK IGEKMK KEP+GD  T+P
Sbjct: 61 SKEIGEKMKKKEPLGDDDTVP 81

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213057|gb|EFN88588.1| Seryl-tRNA synthetase, cytoplasmic [Harpegnathos saltator]

 Score =  124 bits (312), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 60/81 (74%), Positives = 66/81 (81%)

Query: 1  MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
          MVLDLDLFR +KG DPEK+R NQK RFK+V+LVD VIE D  WRQ RH ADNFNK KNLC
Sbjct: 1  MVLDLDLFRKDKGFDPEKIRDNQKRRFKDVQLVDTVIEKDKHWRQLRHCADNFNKLKNLC 60

Query: 61 SKVIGEKMKAKEPVGDSSTLP 81
          SK IGEKMK KEP+GD  T+P
Sbjct: 61 SKEIGEKMKKKEPLGDDDTVP 81

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91086675|ref|XP_968460.1| PREDICTED: similar to seryl-tRNA synthetase [Tribolium castaneum]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/78 (73%), Positives = 68/78 (87%)

Query: 1  MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
          MVLDLDLFRT+KGG+P+K+R++QK RFK+V LVDKV+E D  WRQ RHKADN NKFKNLC
Sbjct: 1  MVLDLDLFRTDKGGNPDKIRESQKKRFKDVTLVDKVVEADTTWRQLRHKADNLNKFKNLC 60

Query: 61 SKVIGEKMKAKEPVGDSS 78
          SK IG+KMK KEP GD++
Sbjct: 61 SKEIGDKMKKKEPQGDAN 78

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270010395|gb|EFA06843.1| hypothetical protein TcasGA2_TC009786 [Tribolium castaneum]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/78 (73%), Positives = 68/78 (87%)

Query: 1  MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
          MVLDLDLFRT+KGG+P+K+R++QK RFK+V LVDKV+E D  WRQ RHKADN NKFKNLC
Sbjct: 1  MVLDLDLFRTDKGGNPDKIRESQKKRFKDVTLVDKVVEADTTWRQLRHKADNLNKFKNLC 60

Query: 61 SKVIGEKMKAKEPVGDSS 78
          SK IG+KMK KEP GD++
Sbjct: 61 SKEIGDKMKKKEPQGDAN 78

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156552806|ref|XP_001599572.1| PREDICTED: seryl-tRNA synthetase, cytoplasmic-like [Nasonia vitripennis]

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/81 (72%), Positives = 67/81 (82%)

Query: 1  MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
          MVLDLDLFR +KG DP+KVR+NQ+ RFK+V LVD VIE D  WRQ RH+ADN NK KNLC
Sbjct: 1  MVLDLDLFREDKGFDPKKVRENQEKRFKDVGLVDTVIEKDKLWRQLRHRADNLNKLKNLC 60

Query: 61 SKVIGEKMKAKEPVGDSSTLP 81
          SKVIGEKMK KEPVGD  ++P
Sbjct: 61 SKVIGEKMKKKEPVGDDDSVP 81

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180360|gb|EFN68386.1| Seryl-tRNA synthetase, cytoplasmic [Camponotus floridanus]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 67/81 (82%)

Query: 1  MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
          MVLDLDLFR +KG DPEK+R+NQ+ RFK+V+LVD VIE D +WRQ RH ADNFNK KNLC
Sbjct: 1  MVLDLDLFRKDKGFDPEKIRENQRKRFKDVQLVDTVIEKDKRWRQLRHCADNFNKLKNLC 60

Query: 61 SKVIGEKMKAKEPVGDSSTLP 81
          SK IGEKMK KEP+GD   +P
Sbjct: 61 SKEIGEKMKKKEPLGDVDDVP 81

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289743367|gb|ADD20431.1| seryl-tRNA synthetase [Glossina morsitans morsitans]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/84 (69%), Positives = 70/84 (83%), Gaps = 1/84 (1%)

Query: 1  MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
          MVLDLDLFR++KGGDP+ VRKNQ+ RFK+V LV+ VI  D++WRQ RH+ADN NK KNLC
Sbjct: 1  MVLDLDLFRSDKGGDPDAVRKNQEKRFKDVGLVETVISEDMEWRQRRHQADNLNKVKNLC 60

Query: 61 SKVIGEKMKAKEPVGDSS-TLPGE 83
          SKVIGEKMK +EP+GD S  +P E
Sbjct: 61 SKVIGEKMKKREPLGDESDEVPAE 84

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|51468022|ref|NP_001003882.1| seryl-tRNA synthetase, cytoplasmic [Danio rerio] gi|49619145|gb|AAT68157.1| seryl-tRNA synthetase [Danio rerio] gi|51980615|gb|AAH81608.1| Seryl-tRNA synthetase [Danio rerio] gi|260763742|dbj|BAI44434.1| seryl-tRNA synthetase [Danio rerio]

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/87 (66%), Positives = 69/87 (79%)

Query: 1  MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
          MVLDLDLFRT+KGGDPE +R+ Q+ RFK+V LVDK+++ D +WR+ R  ADN NK KNLC
Sbjct: 1  MVLDLDLFRTDKGGDPEIIRETQRKRFKDVSLVDKLVQADTEWRKCRFTADNLNKAKNLC 60

Query: 61 SKVIGEKMKAKEPVGDSSTLPGETLNV 87
          SK IGEKMK KEPVGD  TLP E  N+
Sbjct: 61 SKSIGEKMKKKEPVGDDDTLPEEAQNL 87

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|125986127|ref|XP_001356827.1| GA14420 [Drosophila pseudoobscura pseudoobscura] gi|195148460|ref|XP_002015192.1| GL19573 [Drosophila persimilis] gi|54645153|gb|EAL33893.1| GA14420 [Drosophila pseudoobscura pseudoobscura] gi|194107145|gb|EDW29188.1| GL19573 [Drosophila persimilis]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/99 (60%), Positives = 70/99 (70%), Gaps = 1/99 (1%)

Query: 1  MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
          MVLDLDLFR++KGG+P  VR NQK RFK+V LV+ VIE D +WRQ RH+ADN NK KN+C
Sbjct: 1  MVLDLDLFRSDKGGNPNAVRDNQKKRFKDVALVETVIEKDTEWRQCRHRADNLNKVKNVC 60

Query: 61 SKVIGEKMKAKEPVGD-SSTLPGETLNVCWSVLKHALHP 98
          SKVIGEKMK KEPVG  S  LP         ++   L P
Sbjct: 61 SKVIGEKMKKKEPVGAVSEELPAAVTTSLTEIVPETLQP 99

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025907|gb|EGI66063.1| Seryl-tRNA synthetase, cytoplasmic [Acromyrmex echinatior]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/76 (76%), Positives = 64/76 (84%)

Query: 1  MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
          MVLDLD FR +KG DPEK+R+NQK RFK+VELVD VIE D  WRQ RH+ADNFNK KNLC
Sbjct: 1  MVLDLDFFRKDKGFDPEKIRENQKKRFKDVELVDTVIEKDKHWRQLRHRADNFNKLKNLC 60

Query: 61 SKVIGEKMKAKEPVGD 76
          SK IGEKMK KEP+GD
Sbjct: 61 SKEIGEKMKRKEPLGD 76

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
ZFIN|ZDB-GENE-040831-1	515	sars "seryl-tRNA synthetase" [	0.852	0.168	0.666	4.9e-27
FB|FBgn0031497	501	CG17259 [Drosophila melanogast	0.960	0.195	0.595	2.6e-26
UNIPROTKB|Q9GMB8	514	SARS "Serine--tRNA ligase, cyt	0.852	0.169	0.586	3e-24
RGD|628813	512	Sars "seryl-tRNA synthetase" [	0.843	0.167	0.593	3.7e-24
UNIPROTKB|Q6P799	512	Sars "Serine--tRNA ligase, cyt	0.843	0.167	0.593	3.7e-24
UNIPROTKB|E2R4D5	513	SARS "Uncharacterized protein"	0.843	0.167	0.609	1e-23
UNIPROTKB|P49591	514	SARS "Serine--tRNA ligase, cyt	0.843	0.167	0.593	1.1e-23
UNIPROTKB|Q5T5C7	536	SARS "Serine--tRNA ligase, cyt	0.843	0.160	0.593	1.2e-23
MGI|MGI:102809	512	Sars "seryl-aminoacyl-tRNA syn	0.843	0.167	0.593	2.2e-23
UNIPROTKB|F1S5Z3	514	SARS "Uncharacterized protein"	0.852	0.169	0.574	2.9e-23

ZFIN|ZDB-GENE-040831-1 sars "seryl-tRNA synthetase" [Danio rerio (taxid:7955)]

 Score = 308 (113.5 bits), Expect = 4.9e-27, P = 4.9e-27
 Identities = 58/87 (66%), Positives = 69/87 (79%)

Query:     1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
             MVLDLDLFRT+KGGDPE +R+ Q+ RFK+V LVDK+++ D +WR+ R  ADN NK KNLC
Sbjct:     1 MVLDLDLFRTDKGGDPEIIRETQRKRFKDVSLVDKLVQADTEWRKCRFTADNLNKAKNLC 60

Query:    61 SKVIGEKMKAKEPVGDSSTLPGETLNV 87
             SK IGEKMK KEPVGD  TLP E  N+
Sbjct:    61 SKSIGEKMKKKEPVGDDDTLPEEAQNL 87

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004828 "serine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IMP

GO:0001525 "angiogenesis" evidence=IMP

FB|FBgn0031497 CG17259 [Drosophila melanogaster (taxid:7227)]

 Score = 301 (111.0 bits), Expect = 2.6e-26, P = 2.6e-26
 Identities = 59/99 (59%), Positives = 72/99 (72%)

Query:     1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
             MVLDLDLFR++KGG+P+ VR+NQK RFK+V LV+ VI  D +WRQ RH+ADN NK KN+C
Sbjct:     1 MVLDLDLFRSDKGGNPDLVRENQKKRFKDVALVETVIAKDTEWRQCRHRADNLNKVKNVC 60

Query:    61 SKVIGEKMKAKEPVGD-SSTLPGETLNVCWSVLKHALHP 98
             SKVIGEKMK KEPVG  S  LP +       ++   L P
Sbjct:    61 SKVIGEKMKKKEPVGAMSEDLPADVTKDLTEIVAETLQP 99

GO:0004828 "serine-tRNA ligase activity" evidence=ISS

GO:0006434 "seryl-tRNA aminoacylation" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IDA

UNIPROTKB|Q9GMB8 SARS "Serine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 283 (104.7 bits), Expect = 3.0e-24, P = 3.0e-24
 Identities = 51/87 (58%), Positives = 69/87 (79%)

Query:     1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
             MVLDLDLFR +KGGDP  +R++Q+ RFK+  LVD++++ D +WR+ R +ADN NK KNLC
Sbjct:     1 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60

Query:    61 SKVIGEKMKAKEPVGDSSTLPGETLNV 87
             SK IGEKMK KEPVG+  ++P + LN+
Sbjct:    61 SKTIGEKMKKKEPVGNDESIPEDVLNL 87

GO:0097056 "selenocysteinyl-tRNA(Sec) biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004828 "serine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

RGD|628813 Sars "seryl-tRNA synthetase" [Rattus norvegicus (taxid:10116)]

 Score = 282 (104.3 bits), Expect = 3.7e-24, P = 3.7e-24
 Identities = 51/86 (59%), Positives = 67/86 (77%)

Query:     1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
             MVLDLDLFR +KGGDP  +R+ Q+ RFK+  LVD++++ D +WR+ R +ADN NK KNLC
Sbjct:     1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60

Query:    61 SKVIGEKMKAKEPVGDSSTLPGETLN 86
             SK IGEKMK KEPVG+  ++P + LN
Sbjct:    61 SKTIGEKMKKKEPVGEDESIPEDVLN 86

GO:0004828 "serine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

GO:0097056 "selenocysteinyl-tRNA(Sec) biosynthetic process" evidence=IEA

UNIPROTKB|Q6P799 Sars "Serine--tRNA ligase, cytoplasmic" [Rattus norvegicus (taxid:10116)]

 Score = 282 (104.3 bits), Expect = 3.7e-24, P = 3.7e-24
 Identities = 51/86 (59%), Positives = 67/86 (77%)

Query:     1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
             MVLDLDLFR +KGGDP  +R+ Q+ RFK+  LVD++++ D +WR+ R +ADN NK KNLC
Sbjct:     1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60

Query:    61 SKVIGEKMKAKEPVGDSSTLPGETLN 86
             SK IGEKMK KEPVG+  ++P + LN
Sbjct:    61 SKTIGEKMKKKEPVGEDESIPEDVLN 86

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

UNIPROTKB|E2R4D5 SARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 278 (102.9 bits), Expect = 1.0e-23, P = 1.0e-23
 Identities = 53/87 (60%), Positives = 67/87 (77%)

Query:     1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
             MVLDLDLFR +KGGDP  +R+ Q+ RFK+  LVD+++  D +WR+ R +ADN NK KNLC
Sbjct:     1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVRADGEWRRCRFRADNLNKLKNLC 60

Query:    61 SKVIGEKMKAKEPVGDSSTLPGETLNV 87
             SK IGEKMK KEPVGD S +P + LN+
Sbjct:    61 SKTIGEKMKKKEPVGDES-IPEDALNL 86

GO:0005739 "mitochondrion" evidence=IEA

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004828 "serine-tRNA ligase activity" evidence=IEA

UNIPROTKB|P49591 SARS "Serine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 278 (102.9 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 51/86 (59%), Positives = 66/86 (76%)

Query:     1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
             MVLDLDLFR +KGGDP  +R+ Q+ RFK+  LVD++++ D +WR+ R +ADN NK KNLC
Sbjct:     1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60

Query:    61 SKVIGEKMKAKEPVGDSSTLPGETLN 86
             SK IGEKMK KEPVGD  ++P   L+
Sbjct:    61 SKTIGEKMKKKEPVGDDESVPENVLS 86

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0097056 "selenocysteinyl-tRNA(Sec) biosynthetic process" evidence=IEA

GO:0008033 "tRNA processing" evidence=TAS

GO:0003723 "RNA binding" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0004828 "serine-tRNA ligase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006418 "tRNA aminoacylation for protein translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q5T5C7 SARS "Serine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 278 (102.9 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 51/86 (59%), Positives = 66/86 (76%)

Query:     1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
             MVLDLDLFR +KGGDP  +R+ Q+ RFK+  LVD++++ D +WR+ R +ADN NK KNLC
Sbjct:     1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60

Query:    61 SKVIGEKMKAKEPVGDSSTLPGETLN 86
             SK IGEKMK KEPVGD  ++P   L+
Sbjct:    61 SKTIGEKMKKKEPVGDDESVPENVLS 86

GO:0004828 "serine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:102809 Sars "seryl-aminoacyl-tRNA synthetase" [Mus musculus (taxid:10090)]

 Score = 275 (101.9 bits), Expect = 2.2e-23, P = 2.2e-23
 Identities = 51/86 (59%), Positives = 65/86 (75%)

Query:     1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
             MVLDLDLFR +KGGDP  +R+ Q+ RFK+  LVD++++ D +WR+ R +ADN NK KNLC
Sbjct:     1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60

Query:    61 SKVIGEKMKAKEPVGDSSTLPGETLN 86
             SK IGEKMK KE VGD  ++P   LN
Sbjct:    61 SKTIGEKMKKKEAVGDDESVPENVLN 86

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0004828 "serine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|F1S5Z3 SARS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 274 (101.5 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 50/87 (57%), Positives = 68/87 (78%)

Query:     1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
             MVLDLDLFR +KGGDP  +R++Q+ RFK+  LVD++++ D +WR+ R +ADN NK KNLC
Sbjct:     1 MVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60

Query:    61 SKVIGEKMKAKEPVGDSSTLPGETLNV 87
             S+ IGEKMK KE VG+  +LP + LN+
Sbjct:    61 SRTIGEKMKKKEAVGNDESLPEDVLNL 87

GO:0005739 "mitochondrion" evidence=IEA

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004828 "serine-tRNA ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49591	SYSC_HUMAN	6, ., 1, ., 1, ., 1, 1	0.5930	0.8431	0.1673	yes	N/A
Q18678	SYSC_CAEEL	6, ., 1, ., 1, ., 1, 1	0.6125	0.7843	0.1642	yes	N/A
Q6P799	SYSC_RAT	6, ., 1, ., 1, ., 1, 1	0.5930	0.8431	0.1679	yes	N/A
Q9GMB8	SYSC_BOVIN	6, ., 1, ., 1, ., 1, 1	0.5862	0.8529	0.1692	yes	N/A
P26638	SYSC_MOUSE	6, ., 1, ., 1, ., 1, 1	0.5930	0.8431	0.1679	yes	N/A
Q5R9K9	SYSC_PONAB	6, ., 1, ., 1, ., 1, 1	0.5930	0.8431	0.1673	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	102
PLN02678	448	PLN02678, PLN02678, seryl-tRNA synthetase	4e-22
pfam02403	108	pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-t	6e-16
COG0172	429	COG0172, SerS, Seryl-tRNA synthetase [Translation,	4e-11
PRK05431	425	PRK05431, PRK05431, seryl-tRNA synthetase; Provisi	7e-08
TIGR00414	418	TIGR00414, serS, seryl-tRNA synthetase	5e-05

>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase

 Score = 88.6 bits (220), Expect = 4e-22
 Identities = 34/71 (47%), Positives = 49/71 (69%)

Query: 3  LDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSK 62
          LD++LFR EKGGDPE +R++Q+ RF +VELVD+VI  D +WRQ + + D+  K  N  +K
Sbjct: 2  LDINLFREEKGGDPELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNK 61

Query: 63 VIGEKMKAKEP 73
           + +   AKE 
Sbjct: 62 EVAKLKIAKED 72

Length = 448

>gnl|CDD|217020 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain

 Score = 66.8 bits (164), Expect = 6e-16
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 2  VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
          +LD+ L R     +PE V++  + R  +V  VD+++E D + R+ + + +     +N  S
Sbjct: 1  MLDIKLIRE----NPEAVKEKLRKRGVDVLDVDELLELDEERRELQVELEELQAERNELS 56

Query: 62 KVIGEKMKAKE 72
          K IG+  K KE
Sbjct: 57 KEIGKAKKKKE 67

This domain is found associated with the Pfam tRNA synthetase class II domain (pfam00587) and represents the N-terminal domain of seryl-tRNA synthetase. Length = 108

>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score = 57.2 bits (139), Expect = 4e-11
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 3  LDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSK 62
          LDL L R     +P+ VR+  K R  +   VDK++E D + R+   + +     +N  SK
Sbjct: 2  LDLKLIRE----NPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSK 57

Query: 63 VIGEKMKAKE 72
           IG  +K  E
Sbjct: 58 EIGRALKRGE 67

Length = 429

>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional

 Score = 48.1 bits (116), Expect = 7e-08
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 3  LDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSK 62
          LD+ L R     +PE V++    R      VD+++E D + R+ + + +     +N  SK
Sbjct: 2  LDIKLIRE----NPEAVKEALAKRGF-PLDVDELLELDEERRELQTELEELQAERNALSK 56

Query: 63 VIGEKMKAKE 72
           IG+  +  E
Sbjct: 57 EIGQAKRKGE 66

Length = 425

>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 3  LDLDLFRTEKGGDPEKVRKNQKDRFKNVEL-VDKVIENDLKWRQFRHKADNFNKFKNLCS 61
          LD  L R     +P+ V+++ K R  +V++ ++K+I  D + ++   + +     +N  S
Sbjct: 2  LDRKLLR----NNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELS 57

Query: 62 KVIGEKMKAKEPVGDS 77
          K IG+    K+   + 
Sbjct: 58 KQIGKAKGQKKDKIEE 73

This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model [Protein synthesis, tRNA aminoacylation]. Length = 418

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	99.81
PLN02678	448	seryl-tRNA synthetase	99.66
TIGR00414	418	serS seryl-tRNA synthetase. This model represents	99.62
PRK05431	425	seryl-tRNA synthetase; Provisional	99.57
PLN02320	502	seryl-tRNA synthetase	99.47
COG0172	429	SerS Seryl-tRNA synthetase [Translation, ribosomal	99.44
KOG2509|consensus	455		99.17
PRK14127	109	cell division protein GpsB; Provisional	88.54

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=99.81  E-value=7.2e-20  Score=123.53  Aligned_cols=81  Identities=35%  Similarity=0.456  Sum_probs=68.8

Q ss_pred             cCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCC----C
Q psy10035          2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGD----S   77 (102)
Q Consensus         2 MLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~~e----~   77 (102)
                      |||+++||+    |||.|++++.+||.....|++|+++|.+||++++++++|++++|.+|++||..+++|+++++    +
T Consensus         1 MLDik~ir~----n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~   76 (108)
T PF02403_consen    1 MLDIKLIRE----NPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEV   76 (108)
T ss_dssp             --SHHHHHH----HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHH
T ss_pred             CCCHHHHHh----CHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHH
Confidence            999999999    99999999999985555699999999999999999999999999999999999999866554    4


Q ss_pred             CCchhHHhh
Q psy10035         78 STLPGETLN   86 (102)
Q Consensus        78 ~~l~~~~~~   86 (102)
                      .++..++..
T Consensus        77 ~~lk~~i~~   85 (108)
T PF02403_consen   77 KELKEEIKE   85 (108)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444443

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PLN02678 seryl-tRNA synthetase

Probab=99.66  E-value=2.4e-16  Score=129.77  Aligned_cols=84  Identities=43%  Similarity=0.641  Sum_probs=72.3

Q ss_pred             cCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCC----C
Q psy10035          2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGD----S   77 (102)
Q Consensus         2 MLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~~e----~   77 (102)
                      |||+++||+++|.|||.|++++++||++.+.||+|+++|++||++++++++|++++|++||+|+.+++.+++.++    +
T Consensus         1 mlD~k~ir~~~~~~~~~v~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~   80 (448)
T PLN02678          1 MLDINLFREEKGGDPELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAET   80 (448)
T ss_pred             CCCHHHHhcccccCHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            999999998888899999999999998766689999999999999999999999999999999987777665443    3


Q ss_pred             CCchhHHh
Q psy10035         78 STLPGETL   85 (102)
Q Consensus        78 ~~l~~~~~   85 (102)
                      ++|.++|.
T Consensus        81 ~~Lk~ei~   88 (448)
T PLN02678         81 KELKKEIT   88 (448)
T ss_pred             HHHHHHHH
Confidence            44444443

>TIGR00414 serS seryl-tRNA synthetase

Probab=99.62  E-value=1e-15  Score=124.55  Aligned_cols=82  Identities=24%  Similarity=0.349  Sum_probs=69.3

Q ss_pred             cCchHHHhccCCCCHHHHHHHHHhhCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCC-CCC---
Q psy10035          2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVE-LVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEP-VGD---   76 (102)
Q Consensus         2 MLDik~IR~~k~gn~e~v~~~L~kR~~~~~-~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~-~~e---   76 (102)
                      ||||++||+    |||.|++++++||++.+ .||+|+.+|++||++++++++|++++|.+||+|+.+++.+++ .++   
T Consensus         1 MlDik~ir~----n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~   76 (418)
T TIGR00414         1 MLDRKLLRN----NPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKK   76 (418)
T ss_pred             CCCHHHHHh----CHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence            899999999    99999999999997654 489999999999999999999999999999999987766654 333   


Q ss_pred             -CCCchhHHhhh
Q psy10035         77 -SSTLPGETLNV   87 (102)
Q Consensus        77 -~~~l~~~~~~~   87 (102)
                       +++|.++|+++
T Consensus        77 ~~~~l~~~~~~~   88 (418)
T TIGR00414        77 ELKELKEELTEL   88 (418)
T ss_pred             HHHHHHHHHHHH
Confidence             45555555544

This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.

>PRK05431 seryl-tRNA synthetase; Provisional

Probab=99.57  E-value=6.1e-15  Score=120.24  Aligned_cols=80  Identities=26%  Similarity=0.385  Sum_probs=67.8

Q ss_pred             cCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCC----C
Q psy10035          2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGD----S   77 (102)
Q Consensus         2 MLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~~e----~   77 (102)
                      |||+++||+    ||+.|++++++|+++.+ ||+|+++|.+||++++++++|++++|.+||+|+..++.+++.++    +
T Consensus         1 MlD~k~ir~----n~~~v~~~l~~R~~~~~-vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~   75 (425)
T PRK05431          1 MLDIKLIRE----NPEAVKEALAKRGFPLD-VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEV   75 (425)
T ss_pred             CCCHHHHHh----CHHHHHHHHHhcCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHH
Confidence            899999999    99999999999997655 89999999999999999999999999999999987766644333    4


Q ss_pred             CCchhHHhh
Q psy10035         78 STLPGETLN   86 (102)
Q Consensus        78 ~~l~~~~~~   86 (102)
                      ++|..++++
T Consensus        76 ~~l~~~~~~   84 (425)
T PRK05431         76 KELKEEIKA   84 (425)
T ss_pred             HHHHHHHHH
Confidence            444444443

>PLN02320 seryl-tRNA synthetase

Probab=99.47  E-value=1.2e-13  Score=115.30  Aligned_cols=66  Identities=15%  Similarity=0.219  Sum_probs=60.7

Q ss_pred             cCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCC
Q psy10035          2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEP   73 (102)
Q Consensus         2 MLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~   73 (102)
                      |||+++||+    ||+.|++++++||++.+ +|+|+++|++||++++++++|++++|.+||+|+. ++.+++
T Consensus        66 mlD~k~ir~----n~~~v~~~l~~R~~~~~-vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-~~~~~~  131 (502)
T PLN02320         66 AIDFKWIRD----NKEAVAINIRNRNSNAN-LELVLELYENMLALQKEVERLRAERNAVANKMKG-KLEPSE  131 (502)
T ss_pred             ccCHHHHHh----CHHHHHHHHHhcCCCcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCCCC
Confidence            999999999    99999999999998777 8999999999999999999999999999999987 444433

>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=3.9e-13  Score=110.46  Aligned_cols=68  Identities=34%  Similarity=0.455  Sum_probs=62.6

Q ss_pred             cCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCC
Q psy10035          2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEP   73 (102)
Q Consensus         2 MLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~   73 (102)
                      |||+++||+    |||.|++++.+||.+...++++++||.+||+++.++|.|++++|.+|++||+.++.+++
T Consensus         1 mld~k~ir~----n~d~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~   68 (429)
T COG0172           1 MLDLKLIRE----NPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED   68 (429)
T ss_pred             CchHHHhhh----CHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence            999999999    99999999999986666699999999999999999999999999999999977666554

>KOG2509|consensus

Probab=99.17  E-value=7.1e-11  Score=97.30  Aligned_cols=65  Identities=52%  Similarity=0.818  Sum_probs=63.3

Q ss_pred             CcCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy10035          1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIG   65 (102)
Q Consensus         1 mMLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~   65 (102)
                      ||||++.||.++||+|+.++++.++|+.+...|++++++|.+|+....++++++.+.|.+++.|+
T Consensus         1 ~~L~~~lf~~~~g~~p~~ir~~q~~r~~d~~~v~~~i~~d~~w~~~~~~ldeln~~~n~l~k~i~   65 (455)
T KOG2509|consen    1 QMLDIRLFRTRKGGNPELIRESQKKRFQDVEAVDEVIELDKEWIETRFELDELNKEKNKLNKEIG   65 (455)
T ss_pred             CccccccccccCCCChHHHHHHHHHhhcCHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHhhhHhh
Confidence            89999999999999999999999999988888999999999999999999999999999999999

>PRK14127 cell division protein GpsB; Provisional

Probab=88.54  E-value=1.8  Score=29.90  Aligned_cols=59  Identities=12%  Similarity=0.171  Sum_probs=32.0

Q ss_pred             CcCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy10035          1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIEN-DLKWRQFRHKADNFNKFKNLCSKVIGEK   67 (102)
Q Consensus         1 mMLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~L-D~~rR~l~~~~e~Lra~rN~lSK~I~~~   67 (102)
                      |+|....|++      ..|..+  -||++.+-||.+++. -..+..+..+...|+.+...+..++..+
T Consensus         4 ~~LTp~DI~~------KeF~~~--~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~   63 (109)
T PRK14127          4 IKLTPKDILE------KEFKTS--MRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDEL   63 (109)
T ss_pred             CCCCHHHHhh------CccCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677777776      334443  479887667766643 2234444444444554444444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	102
3vbb_A	522	Crystal Structure Of Seryl-Trna Synthetase From Hum		2e-25
3qne_A	485	Candida Albicans Seryl-Trna Synthetase Length = 485		5e-11
3qo5_A	485	Crystal Structure Of The Seryl-Trna Synthetase From		1e-10
3lsq_A	484	Trypanosoma Brucei Seryl-Trna Synthetase Length = 4		2e-09

>pdb|3VBB|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Human At 2.9 Angstroms Length = 522

Iteration: 1
 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 66/86 (76%)
Query: 1  MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
          MVLDLDLFR +KGGDP  +R+ Q+ RFK+  LVD++++ D +WR+ R +ADN NK KNLC
Sbjct: 1  MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 61 SKVIGEKMKAKEPVGDSSTLPGETLN 86
          SK IGEKMK KEPVGD  ++P   L+
Sbjct: 61 SKTIGEKMKKKEPVGDDESVPENVLS 86

>pdb|3QNE|A Chain A, Candida Albicans Seryl-Trna Synthetase Length = 485

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 46/75 (61%)
Query: 2  VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
          +LD++ F  EKGGDPE ++ +QK R  +VELVD++I    +W + R   D  NK  N   
Sbjct: 1  MLDINAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQ 60
Query: 62 KVIGEKMKAKEPVGD 76
          K IG++ KAKE   D
Sbjct: 61 KEIGKRFKAKEDAKD 75

>pdb|3QO5|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From Candida Albicans Length = 485

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 46/75 (61%)
Query: 2  VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
          +LD++ F  EKGGDPE ++ +QK R  +VELVD++I    +W + R   D  NK  N   
Sbjct: 1  MLDINAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQ 60
Query: 62 KVIGEKMKAKEPVGD 76
          K IG++ KAKE   D
Sbjct: 61 KEIGKRFKAKEDAKD 75

>pdb|3LSQ|A Chain A, Trypanosoma Brucei Seryl-Trna Synthetase Length = 484

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/81 (44%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 1  MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
          MVLD+ LFR E G +   +R++Q+ RF + ++VD +IE D KWR+ +   +   K  N+C
Sbjct: 6  MVLDIQLFRDETGAN--IIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINIC 63
Query: 61 SKVIGEKMKAKEPVGDSSTLP 81
          SK +G K KAKE  GD+S +P
Sbjct: 64 SKAVGAKKKAKEADGDTSEIP 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	102
3vbb_A	522	Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l	2e-26
3lss_A	484	Seryl-tRNA synthetase; aminoacyl-tRNA synthetase,	8e-24
3qne_A	485	Seryl-tRNA synthetase, cytoplasmic; amino acid bio	4e-23
2dq0_A	455	Seryl-tRNA synthetase; coiled-coil, homodimer, str	1e-09
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	1e-07
2dq3_A	425	Seryl-tRNA synthetase; coiled-coil, homodimer, str	2e-06
1ses_A	421	Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A	5e-05

>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Length = 522

 Score =  100 bits (250), Expect = 2e-26
 Identities = 51/86 (59%), Positives = 66/86 (76%)

Query: 1  MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
          MVLDLDLFR +KGGDP  +R+ Q+ RFK+  LVD++++ D +WR+ R +ADN NK KNLC
Sbjct: 1  MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60

Query: 61 SKVIGEKMKAKEPVGDSSTLPGETLN 86
          SK IGEKMK KEPVGD  ++P   L+
Sbjct: 61 SKTIGEKMKKKEPVGDDESVPENVLS 86

>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Length = 484

 Score = 92.8 bits (231), Expect = 8e-24
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 2/88 (2%)

Query: 1  MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
          MVLD+ LFR E G     +R++Q+ RF + ++VD +IE D KWR+ +   +   K  N+C
Sbjct: 6  MVLDIQLFRDETG--ANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINIC 63

Query: 61 SKVIGEKMKAKEPVGDSSTLPGETLNVC 88
          SK +G K KAKE  GD+S +P +     
Sbjct: 64 SKAVGAKKKAKEADGDTSEIPPQVKEAY 91

>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Length = 485

 Score = 90.8 bits (226), Expect = 4e-23
 Identities = 33/75 (44%), Positives = 46/75 (61%)

Query: 2  VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
          +LD++ F  EKGGDPE ++ +QK R  +VELVD++I    +W + R   D  NK  N   
Sbjct: 1  MLDINAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQ 60

Query: 62 KVIGEKMKAKEPVGD 76
          K IG++ KAKE   D
Sbjct: 61 KEIGKRFKAKEDAKD 75

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Length = 455

 Score = 52.2 bits (126), Expect = 1e-09
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 3  LDLDLFRTEKGGDPEKVRKNQKDRFK--NVELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
          LD+ L R     +PE V+ +   R +   V+ VD++++ D +WR    + +     +N  
Sbjct: 2  LDIKLIRE----NPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKI 57

Query: 61 SKVIGEKMKAKE 72
          +  IG++ K  E
Sbjct: 58 AVEIGKRRKKGE 69

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Length = 501

 Score = 46.9 bits (112), Expect = 1e-07
 Identities = 11/85 (12%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 3   LDLDLFRTEKGGDPEKVRKNQKDRFKNV--ELVDKVIENDLKWRQFRHKADNFNKFKNLC 60
           LD++         PE   +    R   +  + +  +I    + RQ R +  +  + K   
Sbjct: 41  LDMESLCA----YPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAV 96

Query: 61  SKVIGEKMKAKEPVGDSSTLPGETL 85
           ++ +   +  ++          ++L
Sbjct: 97  TEAVRALVVNQDNSQVQQDPQYQSL 121

>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Length = 425

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 3  LDLDLFRTEKGGDPEKVRKNQKDR-FKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCS 61
          +D++L R      P+ V++    R  + V LVDKV+E D + R+   + +     +N  S
Sbjct: 2  IDINLIRE----KPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLS 57

Query: 62 KVIGEKMKAKE 72
          K IG+  +  +
Sbjct: 58 KEIGKLKREGK 68

>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Length = 421

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 9/69 (13%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 3  LDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSK 62
          +DL   R     +PE   +  +++   ++L + ++  D + ++ + +       +N  +K
Sbjct: 2  VDLKRLRQ----EPEVFHRAIREKGVALDL-EALLALDREVQELKKRLQEVQTERNQVAK 56

Query: 63 VIGEKMKAK 71
           + +    +
Sbjct: 57 RVPKAPPEE 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	102
3vbb_A	522	Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l	99.81
3qne_A	485	Seryl-tRNA synthetase, cytoplasmic; amino acid bio	99.77
3lss_A	484	Seryl-tRNA synthetase; aminoacyl-tRNA synthetase,	99.65
2dq3_A	425	Seryl-tRNA synthetase; coiled-coil, homodimer, str	99.64
2dq0_A	455	Seryl-tRNA synthetase; coiled-coil, homodimer, str	99.64
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	99.56
1ses_A	421	Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A	99.52
2wt7_B	90	Transcription factor MAFB; transcription, transcri	91.87
3err_A	536	Fusion protein of microtubule binding domain from	80.2

>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}

Probab=99.81  E-value=5.3e-20  Score=152.46  Aligned_cols=74  Identities=64%  Similarity=1.083  Sum_probs=68.5

Q ss_pred             CcCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCC
Q psy10035          1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPV   74 (102)
Q Consensus         1 mMLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~   74 (102)
                      |||||++||+++|||||.|+++|++||++.+.||+|++||++||++++++|+|++++|.+||+||+++++|+++
T Consensus         1 mmld~~~~r~~~g~n~~~v~~~~~~R~~~~~~vd~~~~ld~~~r~~~~~~e~l~~~~N~~sk~ig~~~~~~~~~   74 (522)
T 3vbb_A            1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPV   74 (522)
T ss_dssp             -CCCGGGSCGGGTCCHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred             CCcCHHHHhccCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            99999999999999999999999999988766999999999999999999999999999999999998887653

>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A

Probab=99.77  E-value=5.6e-19  Score=145.25  Aligned_cols=85  Identities=41%  Similarity=0.628  Sum_probs=76.0

Q ss_pred             cCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCC----C
Q psy10035          2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGD----S   77 (102)
Q Consensus         2 MLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~~e----~   77 (102)
                      ||||++||+++|||||.|++++++||++.+.||+|++||++||++++++++|++++|.+||+||+++++|+++++    +
T Consensus         1 Mldi~~ir~~~~~n~~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~   80 (485)
T 3qne_A            1 MLDINAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEK   80 (485)
T ss_dssp             CCCGGGGCGGGTCCHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             CCChHHHhccCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            999999999999999999999999999876699999999999999999999999999999999999998877654    4


Q ss_pred             CCchhHHhh
Q psy10035         78 STLPGETLN   86 (102)
Q Consensus        78 ~~l~~~~~~   86 (102)
                      ++|..+|++
T Consensus        81 ~~l~~~i~~   89 (485)
T 3qne_A           81 EKLSNEKKE   89 (485)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            445544443

>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*

Probab=99.65  E-value=3.7e-16  Score=128.46  Aligned_cols=66  Identities=42%  Similarity=0.787  Sum_probs=62.5

Q ss_pred             CcCchHHHhccCCCCH--HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q psy10035          1 MVLDLDLFRTEKGGDP--EKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKA   70 (102)
Q Consensus         1 mMLDik~IR~~k~gn~--e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~   70 (102)
                      |||||++||+    |+  +.|++++++||.+.+.||+|++||++||++++++++|++++|.+||+||++++.
T Consensus         6 mmldi~~~r~----~~~~~~v~~~~~~R~~~~~~~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~   73 (484)
T 3lss_A            6 MVLDIQLFRD----ETGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKA   73 (484)
T ss_dssp             CCCCGGGGGS----HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccHHHHHc----CCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            8999999999    95  999999999998876699999999999999999999999999999999998884

>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}

Probab=99.64  E-value=2.2e-16  Score=127.26  Aligned_cols=71  Identities=30%  Similarity=0.462  Sum_probs=66.7

Q ss_pred             cCchHHHhccCCCCHHHHHHHHHhhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCC
Q psy10035          2 VLDLDLFRTEKGGDPEKVRKNQKDRFKN-VELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGD   76 (102)
Q Consensus         2 MLDik~IR~~k~gn~e~v~~~L~kR~~~-~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~~e   76 (102)
                      ||||++||+    |||.|++++++||++ .+.+++|+++|++||++++++++|++++|.+||+||+++++|+++++
T Consensus         1 mld~~~~r~----~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~   72 (425)
T 2dq3_A            1 MIDINLIRE----KPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTE   72 (425)
T ss_dssp             CCCHHHHHH----CHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTT
T ss_pred             CCCHHHHHh----CHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHH
Confidence            999999999    999999999999987 76689999999999999999999999999999999998888876655

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A

Probab=99.64  E-value=3.1e-16  Score=127.55  Aligned_cols=81  Identities=27%  Similarity=0.456  Sum_probs=70.6

Q ss_pred             cCchHHHhccCCCCHHHHHHHHHhhCC-C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCC---
Q psy10035          2 VLDLDLFRTEKGGDPEKVRKNQKDRFK-N-VELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAKEPVGD---   76 (102)
Q Consensus         2 MLDik~IR~~k~gn~e~v~~~L~kR~~-~-~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~~~~~e---   76 (102)
                      ||||++||+    |||.|++++++||+ + .+.+|+|+++|++||++++++++|++++|.+||+||+++++|+++++   
T Consensus         1 mld~~~~r~----n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~   76 (455)
T 2dq0_A            1 MLDIKLIRE----NPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLA   76 (455)
T ss_dssp             CCCHHHHHH----CHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHH
T ss_pred             CCCHHHHHh----CHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            999999999    99999999999998 7 66689999999999999999999999999999999998888876544   


Q ss_pred             -CCCchhHHhh
Q psy10035         77 -SSTLPGETLN   86 (102)
Q Consensus        77 -~~~l~~~~~~   86 (102)
                       +++|..+|++
T Consensus        77 ~~~~~~~~~~~   87 (455)
T 2dq0_A           77 KSREIVKRIGE   87 (455)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence             4444444433

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}

Probab=99.56  E-value=4.9e-15  Score=122.07  Aligned_cols=67  Identities=15%  Similarity=0.197  Sum_probs=62.9

Q ss_pred             CcCchHHHhccCCCCHHHHHHHHHhhCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Q psy10035          1 MVLDLDLFRTEKGGDPEKVRKNQKDRFKN--VELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMKAK   71 (102)
Q Consensus         1 mMLDik~IR~~k~gn~e~v~~~L~kR~~~--~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk~~   71 (102)
                      |||||++||+    |||.|++++++||++  .+.||+|+++|++||++++++++|++++|.+||+||+++++|
T Consensus        39 pmlD~~~ir~----n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~  107 (501)
T 1wle_A           39 PLLDMESLCA----YPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQ  107 (501)
T ss_dssp             CCCCHHHHHH----SHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHh----CHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            7999999999    999999999999986  455899999999999999999999999999999999987765

>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A

Probab=99.52  E-value=2.6e-15  Score=120.99  Aligned_cols=60  Identities=13%  Similarity=0.343  Sum_probs=58.5

Q ss_pred             cCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy10035          2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGE   66 (102)
Q Consensus         2 MLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~   66 (102)
                      ||||++||+    |||.|++++++||++.+ +++|+++|++||++++++++|++++|.+||+||+
T Consensus         1 mld~~~~r~----~~~~~~~~~~~r~~~~~-~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~   60 (421)
T 1ses_A            1 MVDLKRLRQ----EPEVFHRAIREKGVALD-LEALLALDREVQELKKRLQEVQTERNQVAKRVPK   60 (421)
T ss_dssp             CCCHHHHHH----CHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCHHHHHh----CHHHHHHHHHHhCCCcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999    99999999999999877 8999999999999999999999999999999987

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=91.87  E-value=0.64  Score=30.27  Aligned_cols=51  Identities=10%  Similarity=0.002  Sum_probs=44.4

Q ss_pred             HHHHHHhhCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q psy10035         19 VRKNQKDRFKNV----ELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKMK   69 (102)
Q Consensus        19 v~~~L~kR~~~~----~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~kk   69 (102)
                      .+..|++||+.-    -.+++...|..+...+..+++.|+.+...+.+++..++.
T Consensus        29 ~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~   83 (90)
T 2wt7_B           29 KRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKV   83 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678889999743    238999999999999999999999999999999987765

>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A

Probab=80.20  E-value=7.1  Score=32.13  Aligned_cols=48  Identities=13%  Similarity=0.302  Sum_probs=33.9

Q ss_pred             cCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10035          2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFN   54 (102)
Q Consensus         2 MLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lr   54 (102)
                      |.|++.+|+    .|+.+...-+-.++..+ +...+++.++-.+...++...+
T Consensus         1 ~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~k   48 (536)
T 3err_A            1 MVDLKRLRQ----EPEVFHRAIREKGVALD-LEALLAVDEQLHKQQEVIADKQ   48 (536)
T ss_dssp             --CHHHHHS----CHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchHhhhc----ChHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999    99999998888888776 6777777666444444444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	102
d1seta1	110	a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {T	6e-07

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Length = 110

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

 Score = 41.8 bits (98), Expect = 6e-07
 Identities = 9/69 (13%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 3  LDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSK 62
          +DL   R     +PE   +  +++   ++L + ++  D + ++ + +       +N  +K
Sbjct: 2  VDLKRLRQ----EPEVFHRAIREKGVALDL-EALLALDREVQELKKRLQEVQTERNQVAK 56

Query: 63 VIGEKMKAK 71
           + +    +
Sbjct: 57 RVPKAPPEE 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	102
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	99.74

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=99.74  E-value=3.4e-19  Score=118.56  Aligned_cols=62  Identities=13%  Similarity=0.317  Sum_probs=59.5

Q ss_pred             cCchHHHhccCCCCHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy10035          2 VLDLDLFRTEKGGDPEKVRKNQKDRFKNVELVDKVIENDLKWRQFRHKADNFNKFKNLCSKVIGEKM   68 (102)
Q Consensus         2 MLDik~IR~~k~gn~e~v~~~L~kR~~~~~~vd~ii~LD~~rR~l~~~~e~Lra~rN~lSK~I~~~k   68 (102)
                      ||||++||+    ||+.|++++++||++.+ +++|+++|.+||++++++++|++++|.+|++||+.+
T Consensus         1 MlDik~ir~----n~e~v~~~l~~R~~~~~-ld~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~   62 (110)
T d1seta1           1 MVDLKRLRQ----EPEVFHRAIREKGVALD-LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAP   62 (110)
T ss_dssp             CCCHHHHHH----CHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred             CCCHHHHHh----CHHHHHHHHHHcCCccC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999    99999999999999988 899999999999999999999999999999998643