Psyllid ID: psy10042

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
MKKSLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW
Secondary Structure (PSIPRED)
cccccccccHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHcccEEEccccccccccccccccccccEEEEccccHHHHHHHHHHHHcccccccEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccccEEEEEEcccccccEEEEEcccEEEEEHHHHHHHHHcccccEEEEEc
Coil and Loop (DISEMBL)
mkkslyepnadlskKSYISTMAKYQEVYKKSIECPEEFWGQIAKQfhwetpidldrfhshnfnisngpisiKWLEGATTNICYNLLDRnirlglgdkvafyw
Flexible Loop (DISEMBL)
mkkslyepnadlskksyISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICYNLLdrnirlglgdkvafyw
Low Complexity Region (SEG)
MKKSLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW
Disordered region (IsUnstruct)
****************YISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFY*
Disordered Region (DISOPRED)
**KSLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW
Disordered Region (DISEMBL)
********NADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW
Disordered Region (DISPRO)
****LYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKKSLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	102	2.2.26 [Sep-21-2011]
Q9VP61	670	Acetyl-coenzyme A synthet	yes	N/A	0.990	0.150	0.613	5e-36
Q9NR19	701	Acetyl-coenzyme A synthet	yes	N/A	0.941	0.136	0.479	2e-25
Q9QXG4	701	Acetyl-coenzyme A synthet	yes	N/A	0.941	0.136	0.448	3e-23
B9DGD6	743	Acetate--CoA ligase ACS,	yes	N/A	0.921	0.126	0.421	2e-20
Q9RRL7	649	Acetyl-coenzyme A synthet	yes	N/A	0.823	0.129	0.360	7e-12
A6VZN8	652	Acetyl-coenzyme A synthet	yes	N/A	0.921	0.144	0.343	2e-11
A7IFD4	651	Acetyl-coenzyme A synthet	yes	N/A	0.941	0.147	0.343	2e-11
B8EPJ0	645	Acetyl-coenzyme A synthet	yes	N/A	0.911	0.144	0.342	2e-11
Q6MNF1	645	Acetyl-coenzyme A synthet	yes	N/A	0.931	0.147	0.362	3e-11
B9JEV4	652	Acetyl-coenzyme A synthet	yes	N/A	0.735	0.115	0.395	3e-11

>sp|Q9VP61|ACSA_DROME Acetyl-coenzyme A synthetase OS=Drosophila melanogaster GN=AcCoAS PE=2 SV=1

 Score =  149 bits (376), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 62/101 (61%), Positives = 86/101 (85%)

Query: 2   KKSLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHN 61
           +KS+Y+PN  +S+ +YIS+  +YQ+ Y++S++ P EFW ++AKQFHWETP D D+F  +N
Sbjct: 4   EKSIYDPNPAISQNAYISSFEEYQKFYQESLDNPAEFWSRVAKQFHWETPADQDKFLKYN 63

Query: 62  FNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
           FNIS GPISIKW+EGA+TN+CYNLLDRN+R GLGD++A+YW
Sbjct: 64  FNISKGPISIKWMEGASTNLCYNLLDRNVRNGLGDQIAYYW 104

Activates acetate so that it can be used for lipid synthesis or for energy generation.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 1

>sp|Q9NR19|ACSA_HUMAN Acetyl-coenzyme A synthetase, cytoplasmic OS=Homo sapiens GN=ACSS2 PE=1 SV=1

 Score =  114 bits (284), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/98 (47%), Positives = 75/98 (76%), Gaps = 2/98 (2%)

Query: 6   YEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNIS 65
           + P  ++S+ +++ ++ +Y+E++++S+E P EFWG IAK+F+W+TP     F  +NF+++
Sbjct: 29  WSPPPEVSRSAHVPSLQRYRELHRRSVEEPREFWGDIAKEFYWKTPCP-GPFLRYNFDVT 87

Query: 66  NGPISIKWLEGATTNICYNLLDRNI-RLGLGDKVAFYW 102
            G I I+W++GATTNICYN+LDRN+    LGDKVAFYW
Sbjct: 88  KGKIFIEWMKGATTNICYNVLDRNVHEKKLGDKVAFYW 125

Activates acetate so that it can be used for lipid synthesis or for energy generation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9QXG4|ACSA_MOUSE Acetyl-coenzyme A synthetase, cytoplasmic OS=Mus musculus GN=Acss2 PE=1 SV=2

 Score =  107 bits (266), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/98 (44%), Positives = 72/98 (73%), Gaps = 2/98 (2%)

Query: 6   YEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNIS 65
           + P  ++ + +++ ++ +Y+E++++S+E P EFWG IAK+F+W+T      F  +NF+++
Sbjct: 29  WSPPPEVRRSAHVPSLQRYRELHRRSVEEPREFWGNIAKEFYWKTACP-GPFLQYNFDVT 87

Query: 66  NGPISIKWLEGATTNICYNLLDRNI-RLGLGDKVAFYW 102
            G I  +W++GATTNICYN+LDRN+    LGDKVAFYW
Sbjct: 88  KGKIFTEWMKGATTNICYNVLDRNVHEKKLGDKVAFYW 125

Activates acetate so that it can be used for lipid synthesis or for energy generation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|B9DGD6|ACS_ARATH Acetate--CoA ligase ACS, chloroplastic/glyoxysomal OS=Arabidopsis thaliana GN=ACS PE=1 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 63/95 (66%), Gaps = 1/95 (1%)

Query: 8   PNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNG 67
           P+ + S ++ +S+  +Y E++K+S++ P  FW  IA +F+W+     D+  S N ++  G
Sbjct: 94  PSKEFSGQALVSSPQQYMEMHKRSMDDPAAFWSDIASEFYWKQKWG-DQVFSENLDVRKG 152

Query: 68  PISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
           PISI+W +G  TNICYN LD+N+  GLGDK A +W
Sbjct: 153 PISIEWFKGGITNICYNCLDKNVEAGLGDKTAIHW 187

Catalyzes the production of acetyl-CoA, an activated form of acetate that can be used for lipid synthesis or for energy generation. May play a limited role in the biosynthesis of lipids.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9RRL7|ACSA_DEIRA Acetyl-coenzyme A synthetase OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=acsA PE=3 SV=1

 Score = 68.9 bits (167), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 13/97 (13%)

Query: 8   PNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPID--LDRFHSHNFNIS 65
           P+A+    + +S  A+Y+  Y++S++ P++FW ++A   HW    D  LD    H     
Sbjct: 20  PSAEFQAGTRVSR-AEYERRYRQSLDQPDDFWSEVAHDLHWMKDWDRVLDWQEPH----- 73

Query: 66  NGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
                 +W  G  TNI YN LDRN++ GLGDK A  W
Sbjct: 74  -----AQWFVGGQTNIAYNALDRNVQRGLGDKRAIIW 105

Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) (taxid: 243230)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|A6VZN8|ACSA_MARMS Acetyl-coenzyme A synthetase OS=Marinomonas sp. (strain MWYL1) GN=acsA PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 5/99 (5%)

Query: 3   KSLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNF 62
           KSLY   ++ + K+   + A++++ Y++SIE P+EFWG+  K+  W  P         N 
Sbjct: 2   KSLYSATSNEAAKNANVSQAEFEKRYQESIENPDEFWGREGKRIDWFKPYT----KVKNT 57

Query: 63  NISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFY 101
           +   G +SIKW E    N+ YN +DR++     +KVA+Y
Sbjct: 58  SFKRGEVSIKWFEDGELNVAYNCIDRHLAKS-ANKVAYY 95

Marinomonas sp. (strain MWYL1) (taxid: 400668)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|A7IFD4|ACSA_XANP2 Acetyl-coenzyme A synthetase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=acsA PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 6/102 (5%)

Query: 1   MKKSLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSH 60
           M   +Y   ++ ++K+Y+   A YQ +Y  S+  P  FWG+  K+  W TP         
Sbjct: 1   MSDKIYYVPSEWAQKAYVDD-AHYQSMYAASVNDPHAFWGEHGKRIDWFTPYT----KVK 55

Query: 61  NFNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
           N +   G +SIKW E   TN+ YN +DR++    GD+VA  W
Sbjct: 56  NTSFDPGHVSIKWFEDGITNVAYNCVDRHLET-RGDQVAIIW 96

Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) (taxid: 78245)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|B8EPJ0|ACSA_METSB Acetyl-coenzyme A synthetase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=acsA PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 12/105 (11%)

Query: 1   MKKSLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETP---IDLDRF 57
           M   +Y   A+ SK +Y+   AKY+ +Y+ S+  P++FWG+  K+  W  P   +    F
Sbjct: 1   MSDKVYPVTAEWSKSAYVDA-AKYKSMYESSVSEPDKFWGEHGKRIDWVKPYTKVKNTSF 59

Query: 58  HSHNFNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
             HN       +SIKW E   TN+  N +DR++   LGD+ A  W
Sbjct: 60  DPHN-------VSIKWFEDGVTNVSTNCIDRHLAT-LGDQTAIIW 96

Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) (taxid: 395965)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q6MNF1|ACSA_BDEBA Acetyl-coenzyme A synthetase OS=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) GN=acsA PE=3 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 7/102 (6%)

Query: 1   MKKSLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSH 60
           M K LY  N++++KK++I   AKY+ +Y++SI+  E FW + A++  W      D+    
Sbjct: 1   MHKELYPVNSEVAKKAWIDE-AKYKAMYERSIQDNEAFWAEQAERLDWIK--KWDKVKEV 57

Query: 61  NFNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
           +F     P+SIKW  G   N+ YN +DR+++   GDK A  W
Sbjct: 58  SFK---KPVSIKWYLGGKMNVSYNCVDRHLKT-RGDKTALLW 95

Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) (taxid: 264462)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|B9JEV4|ACSA_AGRRK Acetyl-coenzyme A synthetase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=acsA PE=3 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 6/81 (7%)

Query: 22  AKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNI 81
           AKYQ+ Y++S+E P++FWG+  ++  W  P    +  + +F    G +SIKW E   TN+
Sbjct: 21  AKYQKWYRQSVEDPDKFWGKHGQRIDWFKP--YTKVKNTSF---TGKVSIKWFEDGLTNV 75

Query: 82  CYNLLDRNIRLGLGDKVAFYW 102
            YN +DR+++   GD+VAF W
Sbjct: 76  SYNCIDRHLK-KHGDRVAFIW 95

Agrobacterium radiobacter (strain K84 / ATCC BAA-868) (taxid: 311403)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
189241891	666	PREDICTED: similar to AGAP006569-PA [Tri	0.990	0.151	0.633	1e-35
270016487	648	hypothetical protein TcasGA2_TC010479 [T	0.990	0.155	0.633	1e-35
34922289	670	RecName: Full=Acetyl-coenzyme A syntheta	0.990	0.150	0.613	2e-34
24667955	670	acetyl coenzyme A synthase, isoform A [D	0.990	0.150	0.613	2e-34
195441363	670	GK20397 [Drosophila willistoni] gi|19416	0.990	0.150	0.613	4e-34
195592088	674	GD12130 [Drosophila simulans] gi|1941977	0.990	0.149	0.603	7e-34
194875428	670	GG13250 [Drosophila erecta] gi|190655379	0.990	0.150	0.603	7e-34
195348483	670	GM22154 [Drosophila sechellia] gi|194122	0.990	0.150	0.603	7e-34
195477019	609	GE22961 [Drosophila yakuba] gi|194186072	0.990	0.165	0.603	1e-33
195379032	670	GJ11432 [Drosophila virilis] gi|19415544	0.990	0.150	0.594	3e-33

>gi|189241891|ref|XP_968931.2| PREDICTED: similar to AGAP006569-PA [Tribolium castaneum]

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/101 (63%), Positives = 85/101 (84%)

Query: 2   KKSLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHN 61
           +KS+Y PN  ++K +++S+ A+YQE+Y+KSI+ PEEFWG+IAKQF+WETPID++ F  +N
Sbjct: 4   EKSVYLPNPSVAKNAFVSSFAQYQEMYQKSIDNPEEFWGEIAKQFYWETPIDINSFFRYN 63

Query: 62  FNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
           F+I  GPI  KWL+GATTNI YNLLDRN++ G GDKVAFYW
Sbjct: 64  FDIRKGPIYTKWLDGATTNIAYNLLDRNVKNGFGDKVAFYW 104

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270016487|gb|EFA12933.1| hypothetical protein TcasGA2_TC010479 [Tribolium castaneum]

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/101 (63%), Positives = 85/101 (84%)

Query: 2   KKSLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHN 61
           +KS+Y PN  ++K +++S+ A+YQE+Y+KSI+ PEEFWG+IAKQF+WETPID++ F  +N
Sbjct: 4   EKSVYLPNPSVAKNAFVSSFAQYQEMYQKSIDNPEEFWGEIAKQFYWETPIDINSFFRYN 63

Query: 62  FNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
           F+I  GPI  KWL+GATTNI YNLLDRN++ G GDKVAFYW
Sbjct: 64  FDIRKGPIYTKWLDGATTNIAYNLLDRNVKNGFGDKVAFYW 104

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|34922289|sp|Q9VP61.1|ACSA_DROME RecName: Full=Acetyl-coenzyme A synthetase; AltName: Full=Acetate--CoA ligase; AltName: Full=Acetyl-CoA synthetase; Short=ACS; Short=AceCS; AltName: Full=Acyl-activating enzyme gi|19528327|gb|AAL90278.1| LD12826p [Drosophila melanogaster]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 62/101 (61%), Positives = 86/101 (85%)

Query: 2   KKSLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHN 61
           +KS+Y+PN  +S+ +YIS+  +YQ+ Y++S++ P EFW ++AKQFHWETP D D+F  +N
Sbjct: 4   EKSIYDPNPAISQNAYISSFEEYQKFYQESLDNPAEFWSRVAKQFHWETPADQDKFLKYN 63

Query: 62  FNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
           FNIS GPISIKW+EGA+TN+CYNLLDRN+R GLGD++A+YW
Sbjct: 64  FNISKGPISIKWMEGASTNLCYNLLDRNVRNGLGDQIAYYW 104

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24667955|ref|NP_730611.1| acetyl coenzyme A synthase, isoform A [Drosophila melanogaster] gi|442633865|ref|NP_001014599.2| acetyl coenzyme A synthase, isoform D [Drosophila melanogaster] gi|23094223|gb|AAF51695.2| acetyl coenzyme A synthase, isoform A [Drosophila melanogaster] gi|329112613|gb|AEB72010.1| FI04028p [Drosophila melanogaster] gi|440216111|gb|AAX52767.2| acetyl coenzyme A synthase, isoform D [Drosophila melanogaster]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 62/101 (61%), Positives = 86/101 (85%)

Query: 2   KKSLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHN 61
           +KS+Y+PN  +S+ +YIS+  +YQ+ Y++S++ P EFW ++AKQFHWETP D D+F  +N
Sbjct: 4   EKSIYDPNPAISQNAYISSFEEYQKFYQESLDNPAEFWSRVAKQFHWETPADQDKFLKYN 63

Query: 62  FNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
           FNIS GPISIKW+EGA+TN+CYNLLDRN+R GLGD++A+YW
Sbjct: 64  FNISKGPISIKWMEGASTNLCYNLLDRNVRNGLGDQIAYYW 104

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195441363|ref|XP_002068481.1| GK20397 [Drosophila willistoni] gi|194164566|gb|EDW79467.1| GK20397 [Drosophila willistoni]

 Score =  148 bits (373), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 62/101 (61%), Positives = 86/101 (85%)

Query: 2   KKSLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHN 61
           +KS+YEPN  +S+K+YIS+  +Y++ Y++S++ P +FW ++AKQFHWETP D D+F  +N
Sbjct: 4   EKSIYEPNPAISQKAYISSFDEYKKFYQESLDNPSDFWSRVAKQFHWETPADPDKFLQYN 63

Query: 62  FNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
           FNIS GPISIKW+ GA+TNICYNLLDRN+R GLGD++A+YW
Sbjct: 64  FNISKGPISIKWMAGASTNICYNLLDRNVRNGLGDQIAYYW 104

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195592088|ref|XP_002085768.1| GD12130 [Drosophila simulans] gi|194197777|gb|EDX11353.1| GD12130 [Drosophila simulans]

 Score =  147 bits (371), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 61/101 (60%), Positives = 86/101 (85%)

Query: 2   KKSLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHN 61
           +KS+Y+PN  +S+ +YIS+  +YQ+ Y++S++ P EFW ++AKQFHWETP D ++F  +N
Sbjct: 4   EKSIYDPNPAISQNAYISSFEEYQKFYQESLDNPAEFWSRVAKQFHWETPADPEKFLKYN 63

Query: 62  FNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
           FNIS GPISIKW+EGA+TN+CYNLLDRN+R GLGD++A+YW
Sbjct: 64  FNISKGPISIKWMEGASTNLCYNLLDRNVRNGLGDQIAYYW 104

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194875428|ref|XP_001973596.1| GG13250 [Drosophila erecta] gi|190655379|gb|EDV52622.1| GG13250 [Drosophila erecta]

 Score =  147 bits (371), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 61/101 (60%), Positives = 86/101 (85%)

Query: 2   KKSLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHN 61
           +KS+Y+PN  +S+ +YIS+  +YQ+ Y++S++ P EFW ++AKQFHWETP D ++F  +N
Sbjct: 4   EKSIYDPNPAISQNAYISSFEEYQKFYQESLDNPAEFWSRVAKQFHWETPADPEKFLKYN 63

Query: 62  FNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
           FNIS GPISIKW+EGA+TN+CYNLLDRN+R GLGD++A+YW
Sbjct: 64  FNISKGPISIKWMEGASTNLCYNLLDRNVRNGLGDQIAYYW 104

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195348483|ref|XP_002040778.1| GM22154 [Drosophila sechellia] gi|194122288|gb|EDW44331.1| GM22154 [Drosophila sechellia]

 Score =  147 bits (371), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 61/101 (60%), Positives = 86/101 (85%)

Query: 2   KKSLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHN 61
           +KS+Y+PN  +S+ +YIS+  +YQ+ Y++S++ P EFW ++AKQFHWETP D ++F  +N
Sbjct: 4   EKSIYDPNPAISQNAYISSFEEYQKFYQESLDNPAEFWSRVAKQFHWETPADPEKFLKYN 63

Query: 62  FNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
           FNIS GPISIKW+EGA+TN+CYNLLDRN+R GLGD++A+YW
Sbjct: 64  FNISKGPISIKWMEGASTNLCYNLLDRNVRNGLGDQIAYYW 104

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195477019|ref|XP_002086282.1| GE22961 [Drosophila yakuba] gi|194186072|gb|EDW99683.1| GE22961 [Drosophila yakuba]

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 61/101 (60%), Positives = 86/101 (85%)

Query: 2   KKSLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHN 61
           +KS+Y+PN  +S+ +YIS+  +YQ+ Y++S++ P EFW ++AKQFHWETP D ++F  +N
Sbjct: 4   EKSIYDPNPAISQNAYISSFEEYQKFYQESLDNPAEFWSRVAKQFHWETPADPEKFLKYN 63

Query: 62  FNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
           FNIS GPISIKW+EGA+TN+CYNLLDRN+R GLGD++A+YW
Sbjct: 64  FNISKGPISIKWMEGASTNLCYNLLDRNVRNGLGDQIAYYW 104

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195379032|ref|XP_002048285.1| GJ11432 [Drosophila virilis] gi|194155443|gb|EDW70627.1| GJ11432 [Drosophila virilis]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 84/101 (83%)

Query: 2   KKSLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHN 61
           +KS++ PN  +S+ +YIS+  +Y++ Y++S++ P EFW ++AKQFHWETP D  +F  +N
Sbjct: 4   EKSIFNPNPAISRNAYISSFDEYKKFYQESLDNPTEFWSRVAKQFHWETPADPSKFMQYN 63

Query: 62  FNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
           FNIS GP+SIKW+EGA+TNICYNLLDRN+R GLGD++AFYW
Sbjct: 64  FNISKGPVSIKWMEGASTNICYNLLDRNVRNGLGDQIAFYW 104

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
FB|FBgn0012034	670	AcCoAS "Acetyl Coenzyme A synt	0.990	0.150	0.613	4e-35
UNIPROTKB|C9JY31	203	ACSS2 "Acetyl-coenzyme A synth	0.941	0.472	0.479	5.9e-25
UNIPROTKB|Q9NR19	701	ACSS2 "Acetyl-coenzyme A synth	0.941	0.136	0.479	5.6e-24
UNIPROTKB|Q5QPH3	714	ACSS2 "Acetyl-coenzyme A synth	0.941	0.134	0.479	5.9e-24
UNIPROTKB|F8WCJ4	124	ACSS2 "Acetyl-coenzyme A synth	0.931	0.766	0.474	8.7e-24
ZFIN|ZDB-GENE-040718-388	698	acss2 "acyl-CoA synthetase sho	0.941	0.137	0.525	2.5e-23
UNIPROTKB|A7YWF1	701	ACSS2 "Uncharacterized protein	0.941	0.136	0.469	5.2e-23
RGD|1305489	701	Acss2 "acyl-CoA synthetase sho	0.941	0.136	0.459	5.2e-23
UNIPROTKB|F1S4Y0	701	ACSS2 "Uncharacterized protein	0.941	0.136	0.469	8.6e-23
UNIPROTKB|J9P7N4	701	ACSS2 "Uncharacterized protein	0.941	0.136	0.448	3e-22

FB|FBgn0012034 AcCoAS "Acetyl Coenzyme A synthase" [Drosophila melanogaster (taxid:7227)]

 Score = 386 (140.9 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 62/101 (61%), Positives = 86/101 (85%)

Query:     2 KKSLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHN 61
             +KS+Y+PN  +S+ +YIS+  +YQ+ Y++S++ P EFW ++AKQFHWETP D D+F  +N
Sbjct:     4 EKSIYDPNPAISQNAYISSFEEYQKFYQESLDNPAEFWSRVAKQFHWETPADQDKFLKYN 63

Query:    62 FNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
             FNIS GPISIKW+EGA+TN+CYNLLDRN+R GLGD++A+YW
Sbjct:    64 FNISKGPISIKWMEGASTNLCYNLLDRNVRNGLGDQIAYYW 104

GO:0003987 "acetate-CoA ligase activity" evidence=ISS;NAS

GO:0008152 "metabolic process" evidence=NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0016208 "AMP binding" evidence=IEA

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=IEA

GO:0048149 "behavioral response to ethanol" evidence=IMP

UNIPROTKB|C9JY31 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 47/98 (47%), Positives = 75/98 (76%)

Query:     6 YEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNIS 65
             + P  ++S+ +++ ++ +Y+E++++S+E P EFWG IAK+F+W+TP     F  +NF+++
Sbjct:    29 WSPPPEVSRSAHVPSLQRYRELHRRSVEEPREFWGDIAKEFYWKTPCP-GPFLRYNFDVT 87

Query:    66 NGPISIKWLEGATTNICYNLLDRNIR-LGLGDKVAFYW 102
              G I I+W++GATTNICYN+LDRN+    LGDKVAFYW
Sbjct:    88 KGKIFIEWMKGATTNICYNVLDRNVHEKKLGDKVAFYW 125

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q9NR19 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 284 (105.0 bits), Expect = 5.6e-24, P = 5.6e-24
 Identities = 47/98 (47%), Positives = 75/98 (76%)

Query:     6 YEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNIS 65
             + P  ++S+ +++ ++ +Y+E++++S+E P EFWG IAK+F+W+TP     F  +NF+++
Sbjct:    29 WSPPPEVSRSAHVPSLQRYRELHRRSVEEPREFWGDIAKEFYWKTPCP-GPFLRYNFDVT 87

Query:    66 NGPISIKWLEGATTNICYNLLDRNIR-LGLGDKVAFYW 102
              G I I+W++GATTNICYN+LDRN+    LGDKVAFYW
Sbjct:    88 KGKIFIEWMKGATTNICYNVLDRNVHEKKLGDKVAFYW 125

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IMP

GO:0005737 "cytoplasm" evidence=IC;IDA

GO:0016208 "AMP binding" evidence=IC

GO:0003987 "acetate-CoA ligase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006069 "ethanol oxidation" evidence=TAS

GO:0006805 "xenobiotic metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q5QPH3 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 284 (105.0 bits), Expect = 5.9e-24, P = 5.9e-24
 Identities = 47/98 (47%), Positives = 75/98 (76%)

Query:     6 YEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNIS 65
             + P  ++S+ +++ ++ +Y+E++++S+E P EFWG IAK+F+W+TP     F  +NF+++
Sbjct:    29 WSPPPEVSRSAHVPSLQRYRELHRRSVEEPREFWGDIAKEFYWKTPCP-GPFLRYNFDVT 87

Query:    66 NGPISIKWLEGATTNICYNLLDRNIR-LGLGDKVAFYW 102
              G I I+W++GATTNICYN+LDRN+    LGDKVAFYW
Sbjct:    88 KGKIFIEWMKGATTNICYNVLDRNVHEKKLGDKVAFYW 125

GO:0003987 "acetate-CoA ligase activity" evidence=IEA

GO:0006085 "acetyl-CoA biosynthetic process" evidence=IEA

GO:0019413 "acetate biosynthetic process" evidence=IEA

GO:0019542 "propionate biosynthetic process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|F8WCJ4 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 46/97 (47%), Positives = 74/97 (76%)

Query:     6 YEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNIS 65
             + P  ++S+ +++ ++ +Y+E++++S+E P EFWG IAK+F+W+TP     F  +NF+++
Sbjct:    29 WSPPPEVSRSAHVPSLQRYRELHRRSVEEPREFWGDIAKEFYWKTPCP-GPFLRYNFDVT 87

Query:    66 NGPISIKWLEGATTNICYNLLDRNIR-LGLGDKVAFY 101
              G I I+W++GATTNICYN+LDRN+    LGDKVAFY
Sbjct:    88 KGKIFIEWMKGATTNICYNVLDRNVHEKKLGDKVAFY 124

GO:0003987 "acetate-CoA ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006085 "acetyl-CoA biosynthetic process" evidence=IEA

GO:0019413 "acetate biosynthetic process" evidence=IEA

GO:0019542 "propionate biosynthetic process" evidence=IEA

ZFIN|ZDB-GENE-040718-388 acss2 "acyl-CoA synthetase short-chain family member 2" [Danio rerio (taxid:7955)]

 Score = 278 (102.9 bits), Expect = 2.5e-23, P = 2.5e-23
 Identities = 52/99 (52%), Positives = 71/99 (71%)

Query:     5 LYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNI 64
             L+ P  DL K+++I +  KY+E+Y KS+E PEEFW  +AK F W+T     +F  +NF++
Sbjct:    12 LHAPG-DLKKEAHIPSFEKYKELYIKSVESPEEFWADVAKDFFWKTKYT-GKFLDYNFDV 69

Query:    65 SNGPISIKWLEGATTNICYNLLDRNIR-LGLGDKVAFYW 102
             + G I IK +EGATTNICYN+LDRN+    LGD+VAFYW
Sbjct:    70 TKGEIYIKCMEGATTNICYNVLDRNVHERKLGDRVAFYW 108

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|A7YWF1 ACSS2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 275 (101.9 bits), Expect = 5.2e-23, P = 5.2e-23
 Identities = 46/98 (46%), Positives = 74/98 (75%)

Query:     6 YEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNIS 65
             + P  ++S+ +++ ++ +Y+E++++S+E P EFWG IAK+F+W+TP     F  +NF+++
Sbjct:    29 WSPPPEVSRSAHVPSLQRYRELHRRSLEEPREFWGDIAKEFYWKTPCP-GPFLQYNFDVT 87

Query:    66 NGPISIKWLEGATTNICYNLLDRNIR-LGLGDKVAFYW 102
              G I I+W++GATTNICYN+LDR +    LGDKVAFYW
Sbjct:    88 KGKIFIEWMKGATTNICYNVLDRIVHEKKLGDKVAFYW 125

GO:0006085 "acetyl-CoA biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003987 "acetate-CoA ligase activity" evidence=IEA

RGD|1305489 Acss2 "acyl-CoA synthetase short-chain family member 2" [Rattus norvegicus (taxid:10116)]

 Score = 275 (101.9 bits), Expect = 5.2e-23, P = 5.2e-23
 Identities = 45/98 (45%), Positives = 73/98 (74%)

Query:     6 YEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNIS 65
             + P  ++ + +++ ++ +Y+E++++S+E P EFWG IAK+F+W+TP     F  +NF+++
Sbjct:    29 WSPPPEVRRSAHVPSLQRYRELHRRSVEEPREFWGNIAKEFYWKTPCP-GPFLQYNFDVT 87

Query:    66 NGPISIKWLEGATTNICYNLLDRNIR-LGLGDKVAFYW 102
              G I  +W++GATTNICYN+LDRN+    LGDKVAFYW
Sbjct:    88 KGKIFTEWMKGATTNICYNVLDRNVHEKKLGDKVAFYW 125

GO:0003987 "acetate-CoA ligase activity" evidence=ISO;IDA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0006085 "acetyl-CoA biosynthetic process" evidence=IEA;ISO

GO:0008610 "lipid biosynthetic process" evidence=ISO

GO:0019413 "acetate biosynthetic process" evidence=IDA

GO:0019542 "propionate biosynthetic process" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1S4Y0 ACSS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 273 (101.2 bits), Expect = 8.6e-23, P = 8.6e-23
 Identities = 46/98 (46%), Positives = 72/98 (73%)

Query:     6 YEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNIS 65
             + P  ++ + +++ +  +Y E+++ S+E P+EFWG IAK+F+W+TP     FH +NF+++
Sbjct:    29 WSPPPEIIRCAHVPSQQRYAELHRLSVENPQEFWGDIAKEFYWKTPCP-GPFHQYNFDVT 87

Query:    66 NGPISIKWLEGATTNICYNLLDRNIR-LGLGDKVAFYW 102
              G I I+W++GATTNICYN+LDR +    LGDKVAFYW
Sbjct:    88 KGRIFIEWMKGATTNICYNVLDRIVHEKKLGDKVAFYW 125

GO:0006085 "acetyl-CoA biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003987 "acetate-CoA ligase activity" evidence=IEA

UNIPROTKB|J9P7N4 ACSS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 268 (99.4 bits), Expect = 3.0e-22, P = 3.0e-22
 Identities = 44/98 (44%), Positives = 73/98 (74%)

Query:     6 YEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNIS 65
             + P  ++S+ +++ ++ +Y+E++++S+E P EFWG IAK+F+W+T      F  +NF+++
Sbjct:    29 WSPPPEVSRSAHVPSLQRYRELHRRSVEQPREFWGDIAKEFYWKTSCP-GPFLQYNFDVT 87

Query:    66 NGPISIKWLEGATTNICYNLLDRNIR-LGLGDKVAFYW 102
              G + I+W++GATTNICYN+LDR +    LGDKVAFYW
Sbjct:    88 KGKVFIEWMKGATTNICYNVLDRIVHEKKLGDKVAFYW 125

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VP61	ACSA_DROME	6, ., 2, ., 1, ., 1	0.6138	0.9901	0.1507	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	102
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	4e-32
pfam11930	82	pfam11930, DUF3448, Domain of unknown function (DU	6e-24
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	6e-24
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	2e-23
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	5e-17
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	9e-16
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	3e-13
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	6e-13
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	7e-07
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	7e-05
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	0.003

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score =  117 bits (294), Expect = 4e-32
 Identities = 45/98 (45%), Positives = 64/98 (65%)

Query: 5   LYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNI 64
           L  P+ D S ++ +S+  +Y E+YK+S++ P  FW  IA QF+W+   + D   S N ++
Sbjct: 13  LVFPSKDFSAQALVSSPQQYMEMYKRSVDDPAGFWSDIASQFYWKQKWEGDEVCSENLDV 72

Query: 65  SNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
             GPISI+W +G  TNICYN LDRN+  G GDK+A YW
Sbjct: 73  RKGPISIEWFKGGKTNICYNCLDRNVEAGNGDKIAIYW 110

Length = 666

>gnl|CDD|221322 pfam11930, DUF3448, Domain of unknown function (DUF3448)

 Score = 86.4 bits (215), Expect = 6e-24
 Identities = 35/85 (41%), Positives = 44/85 (51%), Gaps = 11/85 (12%)

Query: 20  TMAKYQEVYKKSIECPEEFWGQIAKQFHWETPID--LDRFHSHNFNISNGPISIKWLEGA 77
            M  YQE+Y++SIE PE FW + A++  W  P D  LD          +    IKW  G 
Sbjct: 3   DMEAYQELYEESIEDPEGFWAEQAEELDWFKPWDKVLD---------WSNAPFIKWFVGG 53

Query: 78  TTNICYNLLDRNIRLGLGDKVAFYW 102
             N  YN LDR++  G GDKVA  W
Sbjct: 54  KLNASYNCLDRHLETGRGDKVAIIW 78

This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. This domain is about 80 amino acids in length. This domain is found associated with pfam00501. This domain has a conserved DRH sequence motif. This domain has two completely conserved residues (N and A) that may be functionally important. Length = 82

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 93.8 bits (234), Expect = 6e-24
 Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 28  YKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICYNLLD 87
           YK+SIE PEEFW + A++  W  P D     S        P   KW  G   N  YN LD
Sbjct: 1   YKESIEDPEEFWAEQAEELDWFKPWDKVLDWS-------NPPFAKWFVGGKLNASYNCLD 53

Query: 88  RNIRLGLGDKVAFYW 102
           R+++ G G+KVA  W
Sbjct: 54  RHLKAGRGNKVAIIW 68

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 92.9 bits (232), Expect = 2e-23
 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 14/100 (14%)

Query: 5   LYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPID--LDRFHSHNF 62
           ++ P A+ +  + I  M +Y+ +Y++S+E PE FW + AK+  W  P D  LD       
Sbjct: 1   VFPPPAEFAANALID-MEQYKALYQESVEDPEGFWAEQAKRLDWFKPFDTVLD------- 52

Query: 63  NISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
                   IKW E    N+ YN LDR+++   GDKVA  W
Sbjct: 53  ---WNAPFIKWFEDGELNVSYNCLDRHLKTR-GDKVAIIW 88

Length = 637

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 74.2 bits (183), Expect = 5e-17
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 11/70 (15%)

Query: 21 MAKYQEVYKKSIECPEEFWGQIAKQFHWETPID--LDRFHSHNFNISNGPISIKWLEGAT 78
          M  Y E Y++SI+ PE FW + A++  W+TP    LD         SN P + +W  G  
Sbjct: 1  MMSYSEFYQRSIDDPEAFWAEQARRIDWQTPFTQVLDY--------SNPPFA-RWFVGGR 51

Query: 79 TNICYNLLDR 88
          TN+C+N +DR
Sbjct: 52 TNLCHNAVDR 61

Length = 629

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 70.7 bits (174), Expect = 9e-16
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 9/86 (10%)

Query: 18  ISTMAKYQEVYKKSIECPEEFWGQIAKQ-FHWETPIDLDRFHSHNFNISNGPISIKWLEG 76
           I+ + +Y+E+Y++SIE P++FW ++A++   W  P       +   + S  P   KW  G
Sbjct: 1   IANLEQYKELYEESIEDPDKFWAKLARELLDWFKP------FTKVLDWSFPP-FYKWFVG 53

Query: 77  ATTNICYNLLDRNIRLGLGDKVAFYW 102
              N+ YN +DR++     DKVA  W
Sbjct: 54  GELNVSYNCVDRHLE-ARPDKVAIIW 78

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 63.4 bits (154), Expect = 3e-13
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 7/68 (10%)

Query: 23 KYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNIC 82
          +Y+E Y++SIE PE FW + A++  W+TP           + SN P + +W  G  TN+C
Sbjct: 2  RYEEFYQRSIEQPEAFWAEQARRIDWQTP------PQRILDYSNPPFA-RWFAGGRTNLC 54

Query: 83 YNLLDRNI 90
          +N LDR++
Sbjct: 55 HNALDRHL 62

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 62.7 bits (153), Expect = 6e-13
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 11/70 (15%)

Query: 35  PEEFWGQIAKQFHWETPID--LDRFHSHNFNISNGPISIKWLEGATTNICYNLLDRNIRL 92
           PE FW + A    W  P +  LD  +         P   +W  G   N+CYN +DR+I  
Sbjct: 3   PEAFWAEQANLIDWYKPWEKVLDNSN---------PPFTRWFVGGRLNLCYNAVDRHIED 53

Query: 93  GLGDKVAFYW 102
           G GD++A  +
Sbjct: 54  GRGDQIALIY 63

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 45.4 bits (108), Expect = 7e-07
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 72  KWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
           KW EG T N+  N LDR++     D  A  +
Sbjct: 1   KWFEGGTLNLALNALDRHLEADRPDDTAIIF 31

Length = 528

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 39.7 bits (93), Expect = 7e-05
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 9/69 (13%)

Query: 24 YQEVYKKSIECPEEFWGQIAKQF-HWETPIDLDRFHSHNFNISNGPISIKWLEGATTNIC 82
          Y+     +   PE FW ++AK++ HW+     D+ +S +       I   W +G   N C
Sbjct: 10 YENDSNYANSNPESFWDEVAKKYVHWDKM--YDKVYSGD------EIYPDWFKGGELNTC 61

Query: 83 YNLLDRNIR 91
          YN+LD +++
Sbjct: 62 YNVLDIHVK 70

Length = 647

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 73  WLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
           WLE    NI Y  +DR+   G  DKVA  +
Sbjct: 36  WLETGKVNIAYEAIDRHADGGRKDKVALRY 65

Length = 570

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
PLN02654	666	acetate-CoA ligase	99.8
PTZ00237	647	acetyl-CoA synthetase; Provisional	99.72
PLN03052	728	acetate--CoA ligase; Provisional	99.72
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	99.68
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.67
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	99.67
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.66
PRK00174	637	acetyl-CoA synthetase; Provisional	99.61
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	99.58
KOG1175|consensus	626		99.28
PRK04319	570	acetyl-CoA synthetase; Provisional	94.93

>PLN02654 acetate-CoA ligase

Probab=99.80  E-value=2.1e-19  Score=144.12  Aligned_cols=99  Identities=45%  Similarity=0.928  Sum_probs=80.1

Q ss_pred             CCCCCChHHHhhcCCCChHHHHHHHHHHhhCHHHHHHHHhhhcccccCCCCCceecccCCCCCCCCcceecCCCcchhhh
Q psy10042          4 SLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICY   83 (102)
Q Consensus         4 ~~~~P~~~~~~~~~~~~~~~y~~l~~~S~~~~~~FW~~~~~~l~w~~~~~~~~v~~~~~~~~~~~~~~~WF~gg~lN~a~   83 (102)
                      .++.|+..+...+.+..+.+|++||+||+++++.||.++++++.|.+++.-++|++.+.+++.+++.++||+||+||+|+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~wf~g~~~N~~~   91 (666)
T PLN02654         12 DLVFPSKDFSAQALVSSPQQYMEMYKRSVDDPAGFWSDIASQFYWKQKWEGDEVCSENLDVRKGPISIEWFKGGKTNICY   91 (666)
T ss_pred             cccCCCHHHHhhccCCCHHHHHHHHHHHhcCHHHHHHHHHHhCCeecCCCcceEeccCCCcccCCccccccCCCEeeHHH
Confidence            45777777777777777789999999999999999999999999998850037775433333445678999999999999


Q ss_pred             HHhhhhhhcCCCCceeEEC
Q psy10042         84 NLLDRNIRLGLGDKVAFYW  102 (102)
Q Consensus        84 N~Ldrh~~~~~~~~~Aii~  102 (102)
                      ||||||+..++++++||+|
T Consensus        92 ~~l~~~~~~~~~~~~Al~~  110 (666)
T PLN02654         92 NCLDRNVEAGNGDKIAIYW  110 (666)
T ss_pred             HHHHHhhccCCCCCEEEEE
Confidence            9999998655689999985

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=99.72  E-value=7.5e-18  Score=134.78  Aligned_cols=75  Identities=29%  Similarity=0.600  Sum_probs=65.3

Q ss_pred             ChHHHHHHHHHHhhCHHHHHHHHhhh-cccccCCCCCceecccCCCCCCCCcceecCCCcchhhhHHhhhhhhcC-CCCc
Q psy10042         20 TMAKYQEVYKKSIECPEEFWGQIAKQ-FHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICYNLLDRNIRLG-LGDK   97 (102)
Q Consensus        20 ~~~~y~~l~~~S~~~~~~FW~~~~~~-l~w~~~~~~~~v~~~~~~~~~~~~~~~WF~gg~lN~a~N~Ldrh~~~~-~~~~   97 (102)
                      ++++|++||+||+++|+.||.++|++ +.|+++|  ++|++.      +++.++||+||+||+++||||||+..+ ++++
T Consensus         6 ~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~--~~~~~~------~~~~~~wf~~~~~n~~~~~l~~~~~~~~~~~~   77 (647)
T PTZ00237          6 DPFDYENDSNYANSNPESFWDEVAKKYVHWDKMY--DKVYSG------DEIYPDWFKGGELNTCYNVLDIHVKNPLKRDQ   77 (647)
T ss_pred             CHHHHHHHHHHHHcCHHHHHHHHHHhcCeeeCCc--ccccCC------CCCchhhCCCCeeeHHHHHHHHhhcccCCCCc
Confidence            47899999999999999999999998 8999999  999852      234489999999999999999997532 5799


Q ss_pred             eeEEC
Q psy10042         98 VAFYW  102 (102)
Q Consensus        98 ~Aii~  102 (102)
                      +||||
T Consensus        78 ~A~~~   82 (647)
T PTZ00237         78 DALIY   82 (647)
T ss_pred             eEEEE
Confidence            99985

>PLN03052 acetate--CoA ligase; Provisional

Probab=99.72  E-value=1.5e-17  Score=135.20  Aligned_cols=94  Identities=19%  Similarity=0.427  Sum_probs=75.6

Q ss_pred             CCCCCCChHHHhhcCC-----------------CChHHHHHHHHHHhhCHHHHHHHHhhh--cccccCCCCCceecccCC
Q psy10042          3 KSLYEPNADLSKKSYI-----------------STMAKYQEVYKKSIECPEEFWGQIAKQ--FHWETPIDLDRFHSHNFN   63 (102)
Q Consensus         3 ~~~~~P~~~~~~~~~~-----------------~~~~~y~~l~~~S~~~~~~FW~~~~~~--l~w~~~~~~~~v~~~~~~   63 (102)
                      +++|.|+.+..+.++|                 ..+++|++||+||+++++.||.+++++  +.|++++  ++|++.+  
T Consensus        84 ~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~sv~~~~~fw~~~~~~~~~~~~~~~--~~v~~~~--  159 (728)
T PLN03052         84 PPAWFPSPEIAKLTNLGRLLEARGKELLGSKYKDPISSFSEFQRFSVENPEVYWSIVLDELSLVFSVPP--RCILDTS--  159 (728)
T ss_pred             CCCCCCChhhcccchHHHHHHHhhhhhhHHhhCCChhhHHHHHHHHhhCHHHHHHHHHHhcCCCccCCC--ceeecCC--
Confidence            3789999885554442                 135789999999999999999999997  6899998  9998631  


Q ss_pred             CCCCCCcceecCCCcchhhhHHhhhhhhcCCCCceeEEC
Q psy10042         64 ISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW  102 (102)
Q Consensus        64 ~~~~~~~~~WF~gg~lN~a~N~Ldrh~~~~~~~~~Aii~  102 (102)
                       ...++.++||+||+||+|+|||++|+. .+++++||+|
T Consensus       160 -~~~~~~~~wf~g~~ln~~~~~l~~~~~-~~pd~~Ai~~  196 (728)
T PLN03052        160 -DESNPGGQWLPGAVLNVAECCLTPKPS-KTDDSIAIIW  196 (728)
T ss_pred             -CCCCCCCEECCCCEeEHHHHHHHHHhc-cCCCCeEEEE
Confidence             123566899999999999999998764 2579999985

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=99.68  E-value=7.5e-17  Score=128.49  Aligned_cols=91  Identities=24%  Similarity=0.383  Sum_probs=74.1

Q ss_pred             CCCCCCCCChHHHhhcCC------------CChHHHHHHHHHHhhCHHHHHHHHhhh--cccccCCCCCceecccCCCCC
Q psy10042          1 MKKSLYEPNADLSKKSYI------------STMAKYQEVYKKSIECPEEFWGQIAKQ--FHWETPIDLDRFHSHNFNISN   66 (102)
Q Consensus         1 ~~~~~~~P~~~~~~~~~~------------~~~~~y~~l~~~S~~~~~~FW~~~~~~--l~w~~~~~~~~v~~~~~~~~~   66 (102)
                      |...+|.|+++..+.++|            .++++|+++|+||+++|+.||.++|+.  +.|++++  +++++.     .
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~--~~~~~~-----~   73 (655)
T PRK03584          1 MGDPLWTPSAERIAASRMTAFIRWLAARRGLSFDDYAALWRWSVEDLEAFWQSVWDFFGVIGSTPY--TVVLAG-----R   73 (655)
T ss_pred             CCCCCCCCChhhcccchHHHHHHHHHHHhCCChHhHHHHHHHHHhCHHHHHHHHHHhcCceecCCC--cEeecC-----C
Confidence            677899988775444442            256899999999999999999999987  8999998  999753     1


Q ss_pred             CCCcceecCCCcchhhhHHhhhhhhcCCCCceeEEC
Q psy10042         67 GPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW  102 (102)
Q Consensus        67 ~~~~~~WF~gg~lN~a~N~Ldrh~~~~~~~~~Aii~  102 (102)
                      ..+.++||+||+||+|+||++ |   .+++++||++
T Consensus        74 ~~~~~~wf~~~~~n~~~~~~~-~---~~~~~~Al~~  105 (655)
T PRK03584         74 RMPGARWFPGARLNYAENLLR-H---RRDDRPAIIF  105 (655)
T ss_pred             CCCCCeeCCCCEeeHHHHhhc-c---CCCCCeEEEE
Confidence            245689999999999999997 4   2578999985

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=99.67  E-value=9.6e-17  Score=128.42  Aligned_cols=87  Identities=22%  Similarity=0.433  Sum_probs=70.8

Q ss_pred             CCCCCChHHHhhcCC------------CChHHHHHHHHHHhhCHHHHHHHHhhh--cccccCCCCCceecccCCCCCCCC
Q psy10042          4 SLYEPNADLSKKSYI------------STMAKYQEVYKKSIECPEEFWGQIAKQ--FHWETPIDLDRFHSHNFNISNGPI   69 (102)
Q Consensus         4 ~~~~P~~~~~~~~~~------------~~~~~y~~l~~~S~~~~~~FW~~~~~~--l~w~~~~~~~~v~~~~~~~~~~~~   69 (102)
                      .+|.|+.+....++|            .++++|+++|+||+++|+.||.++|++  |.|+++|  ++|++.     ..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~--~~~~~~-----~~~~   77 (652)
T TIGR01217         5 PLWQPDAQRIAQARMTRFQAWAGEHHGAAEGGYDALHRWSVDELDTFWKAVWEWFDVRFSTPC--ARVVDD-----RTMP   77 (652)
T ss_pred             CCCCCChhhcccchHHHHHHHHHHhhCCChhhHHHHHHHHHhCHHHHHHHHHHhCCcceeCCC--ceeeeC-----CCCC
Confidence            589888765544443            246799999999999999999999997  9999998  999853     1245


Q ss_pred             cceecCCCcchhhhHHhhhhhhcCCCCceeEEC
Q psy10042         70 SIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW  102 (102)
Q Consensus        70 ~~~WF~gg~lN~a~N~Ldrh~~~~~~~~~Aii~  102 (102)
                      .++||+||++|+|+|||+ |    .++++|++|
T Consensus        78 ~~~wf~~~~~n~~~~~~~-~----~~~~~a~~~  105 (652)
T TIGR01217        78 GAQWFPGARLNYAENLLR-A----AGTEPALLY  105 (652)
T ss_pred             CCEECCCCeeeHHHHHhc-c----CCCCeEEEE
Confidence            689999999999999997 4    257888875

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=99.67  E-value=7.5e-17  Score=127.70  Aligned_cols=74  Identities=32%  Similarity=0.731  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHHhhCHHHHHHHHhhhcccccCCCCCceecccCCCCCCCCcceecCCCcchhhhHHhhhhhhcCCCCceeE
Q psy10042         21 MAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAF  100 (102)
Q Consensus        21 ~~~y~~l~~~S~~~~~~FW~~~~~~l~w~~~~~~~~v~~~~~~~~~~~~~~~WF~gg~lN~a~N~Ldrh~~~~~~~~~Ai  100 (102)
                      +.+|+++|+||+++|+.||.++++.|.|++++  ++|++.+     .++.++||+||++|+|+|+|++|+. .+++++||
T Consensus         1 ~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~--~~~~~~~-----~~~~~~wf~~~~~n~~~~~l~~~~~-~~p~~~A~   72 (629)
T PRK10524          1 MMSYSEFYQRSIDDPEAFWAEQARRIDWQTPF--TQVLDYS-----NPPFARWFVGGRTNLCHNAVDRHLA-KRPEQLAL   72 (629)
T ss_pred             ChhHHHHHHHHhcCHHHHHHHHHHhCCcccCc--hhhccCC-----CCCcCccCCCcEeeHHHHHHHHhhc-cCCCCeEE
Confidence            35799999999999999999999999999998  9998531     2556899999999999999999875 36799999


Q ss_pred             EC
Q psy10042        101 YW  102 (102)
Q Consensus       101 i~  102 (102)
                      +|
T Consensus        73 ~~   74 (629)
T PRK10524         73 IA   74 (629)
T ss_pred             EE
Confidence            74

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=99.66  E-value=2e-16  Score=125.26  Aligned_cols=75  Identities=35%  Similarity=0.795  Sum_probs=65.7

Q ss_pred             ChHHHHHHHHHHhhCHHHHHHHHhhh-cccccCCCCCceecccCCCCCCCCcceecCCCcchhhhHHhhhhhhcCCCCce
Q psy10042         20 TMAKYQEVYKKSIECPEEFWGQIAKQ-FHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKV   98 (102)
Q Consensus        20 ~~~~y~~l~~~S~~~~~~FW~~~~~~-l~w~~~~~~~~v~~~~~~~~~~~~~~~WF~gg~lN~a~N~Ldrh~~~~~~~~~   98 (102)
                      ++++|++||+||+++|+.||.++++. +.|++++  +++++.+     .++.++||+||+||+|+|||++|+.. +++++
T Consensus         3 ~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~wf~~~~~n~~~~~l~~~~~~-~p~~~   74 (625)
T TIGR02188         3 NLEQYKELYEESIEDPDKFWAKLARELLDWFKPF--TKVLDWS-----FPPFYKWFVGGELNVSYNCVDRHLEA-RPDKV   74 (625)
T ss_pred             CHHHHHHHHHHHhcCHHHHHHHHHHhcCceecCC--ceeecCC-----CCCCCeeCCCCEEEHHHHHHHHhhcc-CCCCe
Confidence            47899999999999999999999998 9999998  9998632     24568999999999999999998853 67999


Q ss_pred             eEEC
Q psy10042         99 AFYW  102 (102)
Q Consensus        99 Aii~  102 (102)
                      |++|
T Consensus        75 Al~~   78 (625)
T TIGR02188        75 AIIW   78 (625)
T ss_pred             EEEE
Confidence            9975

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=99.61  E-value=2.2e-15  Score=119.60  Aligned_cols=87  Identities=38%  Similarity=0.808  Sum_probs=75.0

Q ss_pred             CCCChHHHhhcCCCChHHHHHHHHHHhhCHHHHHHHHhhhcccccCCCCCceecccCCCCCCCCcceecCCCcchhhhHH
Q psy10042          6 YEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICYNL   85 (102)
Q Consensus         6 ~~P~~~~~~~~~~~~~~~y~~l~~~S~~~~~~FW~~~~~~l~w~~~~~~~~v~~~~~~~~~~~~~~~WF~gg~lN~a~N~   85 (102)
                      ++|+....+...| ++.+|.+|+++|+++|+.||.++++.+.|.+++  +++++.      +.+..+||+||++|+|+||
T Consensus         2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~--~~~~~~------~~~~~~w~~~~~~n~~~~~   72 (637)
T PRK00174          2 FPPPAEFAANALI-DMEQYKALYQESVEDPEGFWAEQAKRLDWFKPF--DTVLDW------NAPFIKWFEDGELNVSYNC   72 (637)
T ss_pred             cCCChHHHhhcCC-ChHHHHHHHHHHhcCHHHHHHHHHHhcCeecCC--cccccC------CCCCCccCCCCEeEHHHHH
Confidence            4677777777777 578999999999999999999999999999998  999853      2567899999999999999


Q ss_pred             hhhhhhcCCCCceeEEC
Q psy10042         86 LDRNIRLGLGDKVAFYW  102 (102)
Q Consensus        86 Ldrh~~~~~~~~~Aii~  102 (102)
                      |++|+.. .++++||+|
T Consensus        73 l~~~~~~-~p~~~Al~~   88 (637)
T PRK00174         73 LDRHLKT-RGDKVAIIW   88 (637)
T ss_pred             HHHhhcc-CCCCeEEEE
Confidence            9998753 579999984

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=99.58  E-value=2.6e-15  Score=119.35  Aligned_cols=72  Identities=38%  Similarity=0.816  Sum_probs=63.2

Q ss_pred             HHHHHHHHHhhCHHHHHHHHhhhcccccCCCCCceecccCCCCCCCCcceecCCCcchhhhHHhhhhhhcCCCCceeEEC
Q psy10042         23 KYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW  102 (102)
Q Consensus        23 ~y~~l~~~S~~~~~~FW~~~~~~l~w~~~~~~~~v~~~~~~~~~~~~~~~WF~gg~lN~a~N~Ldrh~~~~~~~~~Aii~  102 (102)
                      +|+++|+||+++|+.||.++++.|.|++++  +++++.     ..++.++||+||++|+|+|+|++|+.. +++++||++
T Consensus         2 ~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~--~~~~~~-----~~~~~~~wf~~~~~n~~~~~l~~~~~~-~p~~~Al~~   73 (628)
T TIGR02316         2 RYEEFYQRSIEQPEAFWAEQARRIDWQTPP--QRILDY-----SNPPFARWFAGGRTNLCHNALDRHLDE-RGEQLALVT   73 (628)
T ss_pred             CHHHHHHHHhcCHHHHHHHHHHhCCeecCC--cccccC-----CCCCcCccCCCCEeeHHHHHHHHHhCc-CCCCeEEEE
Confidence            599999999999999999999999999998  999853     125568999999999999999998753 579999974

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>KOG1175|consensus

Probab=99.28  E-value=4.7e-12  Score=101.94  Aligned_cols=78  Identities=44%  Similarity=0.846  Sum_probs=62.8

Q ss_pred             ChHHHHHHHHHHhhCHHHHHHHHhhhcccccCCCCCceecccCCCCCCCCcceecCCCcchhhhHHhhhhhhcCCCCcee
Q psy10042         20 TMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVA   99 (102)
Q Consensus        20 ~~~~y~~l~~~S~~~~~~FW~~~~~~l~w~~~~~~~~v~~~~~~~~~~~~~~~WF~gg~lN~a~N~Ldrh~~~~~~~~~A   99 (102)
                      ++++|+++|++|+++++.||..+++.+.|..+.  .+..   .+.+.+.+.++||+|+.+|+||||++||...+.++++|
T Consensus         9 ~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~w~~g~~ln~~~n~~~~~~~~~~~~~~a   83 (626)
T KOG1175|consen    9 SLSSYREFYRFSVEDPERFWGEVAKELHWKFPW--PRCN---KDENKGNPFTKWFPGAFLNACYNCLDRHIKEKGGDKVA   83 (626)
T ss_pred             CHHHHHHHHhhcccCHHHHHHHhhhhhhcccCc--cccc---cccccCCCCccccccchhhhhHhhhhhhhhhcCCCCcE
Confidence            578999999999999999999999987776553  3111   11234567899999999999999999998765678999


Q ss_pred             EEC
Q psy10042        100 FYW  102 (102)
Q Consensus       100 ii~  102 (102)
                      ++|
T Consensus        84 ~~~   86 (626)
T KOG1175|consen   84 IIF   86 (626)
T ss_pred             EEE
Confidence            886

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=94.93  E-value=0.019  Score=45.25  Aligned_cols=32  Identities=41%  Similarity=0.702  Sum_probs=27.3

Q ss_pred             ceecCCCcchhhhHHhhhhhhcCCCCceeEEC
Q psy10042         71 IKWLEGATTNICYNLLDRNIRLGLGDKVAFYW  102 (102)
Q Consensus        71 ~~WF~gg~lN~a~N~Ldrh~~~~~~~~~Aii~  102 (102)
                      .+||+++++|+++++|++|+....++++|+++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   65 (570)
T PRK04319         34 FSWLETGKVNIAYEAIDRHADGGRKDKVALRY   65 (570)
T ss_pred             hccCCCCceeHHHHHHHHhhccCCCCceEEEE
Confidence            48999999999999999988644578999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	102
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		1e-09
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		1e-09
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		1e-09
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		1e-09
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		1e-09
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		1e-09
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		1e-09
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		8e-04

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 23  KYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNIC 82
           +Y+  YK+SI  P+ FWG+  K   W TP         N + + G +SIKW E  T N+ 
Sbjct: 23  QYETKYKQSINDPDTFWGEQGKILDWITPYQ----KVKNTSFAPGNVSIKWYEDGTLNLA 78
Query: 83  YNLLDRNIRLGLGDKVAFYW 102
            N LDR+++   GD+ A  W
Sbjct: 79  ANCLDRHLQEN-GDRTAIIW 97

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 23  KYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNIC 82
           +Y+  YK+SI  P+ FWG+  K   W TP         N + + G +SIKW E  T N+ 
Sbjct: 23  QYETKYKQSINDPDTFWGEQGKILDWITPYQ----KVKNTSFAPGNVSIKWYEDGTLNLA 78
Query: 83  YNLLDRNIRLGLGDKVAFYW 102
            N LDR+++   GD+ A  W
Sbjct: 79  ANCLDRHLQEN-GDRTAIIW 97

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 23  KYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNIC 82
           +Y+  YK+SI  P+ FWG+  K   W TP         N + + G +SIKW E  T N+ 
Sbjct: 23  QYETKYKQSINDPDTFWGEQGKILDWITPYQ----KVKNTSFAPGNVSIKWYEDGTLNLA 78
Query: 83  YNLLDRNIRLGLGDKVAFYW 102
            N LDR+++   GD+ A  W
Sbjct: 79  ANCLDRHLQEN-GDRTAIIW 97

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 23  KYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNIC 82
           +Y+  YK+SI  P+ FWG+  K   W TP         N + + G +SIKW E  T N+ 
Sbjct: 23  QYETKYKQSINDPDTFWGEQGKILDWITPYQ----KVKNTSFAPGNVSIKWYEDGTLNLA 78
Query: 83  YNLLDRNIRLGLGDKVAFYW 102
            N LDR+++   GD+ A  W
Sbjct: 79  ANCLDRHLQEN-GDRTAIIW 97

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 23  KYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNIC 82
           +Y+  YK+SI  P+ FWG+  K   W TP         N + + G +SIKW E  T N+ 
Sbjct: 23  QYETKYKQSINDPDTFWGEQGKILDWITPYQ----KVKNTSFAPGNVSIKWYEDGTLNLA 78
Query: 83  YNLLDRNIRLGLGDKVAFYW 102
            N LDR+++   GD+ A  W
Sbjct: 79  ANCLDRHLQEN-GDRTAIIW 97

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 23  KYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNIC 82
           +Y+  YK+SI  P+ FWG+  K   W TP         N + + G +SIKW E  T N+ 
Sbjct: 23  QYETKYKQSINDPDTFWGEQGKILDWITPYQ----KVKNTSFAPGNVSIKWYEDGTLNLA 78
Query: 83  YNLLDRNIRLGLGDKVAFYW 102
            N LDR+++   GD+ A  W
Sbjct: 79  ANCLDRHLQEN-GDRTAIIW 97

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 23  KYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNIC 82
           +Y+  YK+SI  P+ FWG+  K   W TP         N + + G +SIKW E  T N+ 
Sbjct: 23  QYETKYKQSINDPDTFWGEQGKILDWITPYQ----KVKNTSFAPGNVSIKWYEDGTLNLA 78
Query: 83  YNLLDRNIRLGLGDKVAFYW 102
            N LDR+++   GD+ A  W
Sbjct: 79  ANCLDRHLQEN-GDRTAIIW 97

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 21 MAKYQEVYKKSIECPEEFWGQIAKQF-HWETPID---LDRFHSHNFNISNGPISIKWLEG 76
          +  YQ ++K+SIE P +F+G  A QF +W  P D   +    +   +  N      W   
Sbjct: 23 LQDYQRLHKESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNN----AWFLN 78
Query: 77 ATTNICYNLLDRN 89
             N CYN +DR+
Sbjct: 79 GQLNACYNCVDRH 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	102
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	1e-28
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	3e-25
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	6e-09

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score =  106 bits (267), Expect = 1e-28
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 6/100 (6%)

Query: 3   KSLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNF 62
              +   A+++ +  I+   +Y+  YK+SI  P+ FWG+  K   W TP         N 
Sbjct: 4   THKHAIPANIADRCLIN-PEQYETKYKQSINDPDTFWGEQGKILDWITPYQ----KVKNT 58

Query: 63  NISNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
           + + G +SIKW E  T N+  N LDR+++   GD+ A  W
Sbjct: 59  SFAPGNVSIKWYEDGTLNLAANCLDRHLQEN-GDRTAIIW 97

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 96.9 bits (242), Expect = 3e-25
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 1   MKKSLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQF-HWETPIDLDRFHS 59
                +  ++ L  +     +  YQ ++K+SIE P +F+G  A QF +W  P   D+   
Sbjct: 3   SSHHHHHHSSGLVPRGSHMGLQDYQRLHKESIEDPAKFFGSKATQFLNWSKP--FDKVFI 60

Query: 60  HNFNISNGPI-SIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
            +         +  W      N CYN +DR+      +K A  +
Sbjct: 61  PDPKTGRPSFQNNAWFLNGQLNACYNCVDRHAL-KTPNKKAIIF 103

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 50.6 bits (122), Expect = 6e-09
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 12/82 (14%)

Query: 22  AKYQEVYKKSIECPEEFWGQIAKQFHWETPI-DLDRFHSHNFNISNGPISIKWLEGATTN 80
             +       I+  ++    +  QF  +T     + F  +           K L     N
Sbjct: 7   HHHHHHSSGHIDDDDKHMTSLLSQFVSKTDFESYEDFQEN----------FKILVPENFN 56

Query: 81  ICYNLLDRNIRLGLGDKVAFYW 102
             Y+++D   R    +K+A  W
Sbjct: 57  FAYDVVDVYAR-DSPEKLAMIW 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	102
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.58
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	99.55

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=99.58  E-value=1.8e-15  Score=120.04  Aligned_cols=80  Identities=29%  Similarity=0.526  Sum_probs=65.2

Q ss_pred             ChHHHHHHHHHHhhCHHHHHHHHhhh-cccccCCCCCceecccCCCC-CCCCcceecCCCcchhhhHHhhhhhhcCCCCc
Q psy10042         20 TMAKYQEVYKKSIECPEEFWGQIAKQ-FHWETPIDLDRFHSHNFNIS-NGPISIKWLEGATTNICYNLLDRNIRLGLGDK   97 (102)
Q Consensus        20 ~~~~y~~l~~~S~~~~~~FW~~~~~~-l~w~~~~~~~~v~~~~~~~~-~~~~~~~WF~gg~lN~a~N~Ldrh~~~~~~~~   97 (102)
                      .+++|.+||++|+++|+.||.++|+. |.|++++  ++|++.+.+.. ...+..+||+||++|+++|||++|+.. ++++
T Consensus        22 ~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a~~-~pd~   98 (663)
T 1ry2_A           22 GLQDYQRLHKESIEDPAKFFGSKATQFLNWSKPF--DKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHALK-TPNK   98 (663)
T ss_dssp             --CHHHHHHHHHHHCHHHHHHHHHHHHCCEEECC--SCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHHTT-CTTS
T ss_pred             ChhhHHHHHHHHhcCHHHHHHHHHhhcCeeecCC--ceeecCccccccCCCCCCCcCCCCCccHHHHHHHHHhcc-CCCc
Confidence            46799999999999999999999998 9999998  99997531100 012337999999999999999999864 6899


Q ss_pred             eeEEC
Q psy10042         98 VAFYW  102 (102)
Q Consensus        98 ~Aii~  102 (102)
                      +||+|
T Consensus        99 ~Al~~  103 (663)
T 1ry2_A           99 KAIIF  103 (663)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            99985

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=99.55  E-value=1e-14  Score=115.31  Aligned_cols=93  Identities=34%  Similarity=0.700  Sum_probs=76.6

Q ss_pred             CCCCCChHHHhhcCCCChHHHHHHHHHHhhCHHHHHHHHhhhcccccCCCCCceecccCCCCCCCCcceecCCCcchhhh
Q psy10042          4 SLYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICY   83 (102)
Q Consensus         4 ~~~~P~~~~~~~~~~~~~~~y~~l~~~S~~~~~~FW~~~~~~l~w~~~~~~~~v~~~~~~~~~~~~~~~WF~gg~lN~a~   83 (102)
                      .+++|+....+.+++. ..+|.+||++|+++|+.||.++++.|.|.+++  +++++.+..  .+.+.++||+||++|+++
T Consensus         5 ~~~~~~~~~~~~~~~~-~~~y~~l~~~~~~~p~~~w~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~wf~~~~~n~~~   79 (652)
T 1pg4_A            5 HKHAIPANIADRCLIN-PEQYETKYKQSINDPDTFWGEQGKILDWITPY--QKVKNTSFA--PGNVSIKWYEDGTLNLAA   79 (652)
T ss_dssp             CCBCCCHHHHHHCSSC-HHHHHHHHHHHHHCHHHHHHHHGGGSCCSBCC--SCCEEEECC--TTCCEEEESTTCEECHHH
T ss_pred             cccCCCHHHHhhccCC-hHHHHHHHHHHhcCHHHHHHHHHhhCceecCC--cccccCccc--cCCCCCEECCCCChhHHH
Confidence            4567777777777764 56899999999999999999999989999998  999865310  014578999999999999


Q ss_pred             HHhhhhhhcCCCCceeEEC
Q psy10042         84 NLLDRNIRLGLGDKVAFYW  102 (102)
Q Consensus        84 N~Ldrh~~~~~~~~~Aii~  102 (102)
                      |+|++|+.. +++++||+|
T Consensus        80 ~~l~~~a~~-~pd~~Al~~   97 (652)
T 1pg4_A           80 NCLDRHLQE-NGDRTAIIW   97 (652)
T ss_dssp             HHTGGGHHH-HTTSEEEEE
T ss_pred             HHHHHHhcc-CCCceEEEE
Confidence            999999864 579999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	102
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	6e-24
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	2e-17

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score = 92.0 bits (228), Expect = 6e-24
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 6/98 (6%)

Query: 5   LYEPNADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNI 64
            +   A+++ +  I    +Y+  YK+SI  P+ FWG+  K   W TP         N + 
Sbjct: 2   KHAIPANIADRCLI-NPEQYETKYKQSINDPDTFWGEQGKILDWITPYQ----KVKNTSF 56

Query: 65  SNGPISIKWLEGATTNICYNLLDRNIRLGLGDKVAFYW 102
           + G +SIKW E  T N+  N LDR+++   GD+ A  W
Sbjct: 57  APGNVSIKWYEDGTLNLAANCLDRHLQEN-GDRTAIIW 93

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.7 bits (180), Expect = 2e-17
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 24  YQEVYKKSIECPEEFWGQIAKQF-HWETPIDLDRFHSHNFNISNGPI-SIKWLEGATTNI 81
           YQ ++K+SIE P +F+G  A QF +W  P   D+    +         +  W      N 
Sbjct: 3   YQRLHKESIEDPAKFFGSKATQFLNWSKPF--DKVFIPDPKTGRPSFQNNAWFLNGQLNA 60

Query: 82  CYNLLDRNIRLGLGDKVAFYW 102
           CYN +DR+      +K A  +
Sbjct: 61  CYNCVDRHALKT-PNKKAIIF 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	102
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	99.87
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	99.8

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.87  E-value=5.5e-23  Score=160.69  Aligned_cols=89  Identities=34%  Similarity=0.674  Sum_probs=73.2

Q ss_pred             ChHHHhhcCCCChHHHHHHHHHHhhCHHHHHHHHhhhcccccCCCCCceecccCCCCCCCCcceecCCCcchhhhHHhhh
Q psy10042          9 NADLSKKSYISTMAKYQEVYKKSIECPEEFWGQIAKQFHWETPIDLDRFHSHNFNISNGPISIKWLEGATTNICYNLLDR   88 (102)
Q Consensus         9 ~~~~~~~~~~~~~~~y~~l~~~S~~~~~~FW~~~~~~l~w~~~~~~~~v~~~~~~~~~~~~~~~WF~gg~lN~a~N~Ldr   88 (102)
                      .++.+.+...-++++|++||+||+++|+.||.++++++.|.+++  ++|++.+..  .+.+.++||+||+||+|||||||
T Consensus         5 ~~~~~~~~~~~~~~~y~~l~~~s~~~~~~fW~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~wf~~~~~N~~~n~ldr   80 (643)
T d1pg4a_           5 IPANIADRCLINPEQYETKYKQSINDPDTFWGEQGKILDWITPY--QKVKNTSFA--PGNVSIKWYEDGTLNLAANCLDR   80 (643)
T ss_dssp             CCHHHHHHCSSCHHHHHHHHHHHHHCHHHHHHHHGGGSCCSBCC--SCCEEEECC--TTCCEEEESTTCEECHHHHHTGG
T ss_pred             CCHHHHHHhCCCHHHHHHHHHHHHhCHHHHHHHHHhheeEECCC--cccccCccC--CCCCCCeeCCCChhhHHHHHHHH
Confidence            33444433334789999999999999999999999999999998  999875321  23456899999999999999999


Q ss_pred             hhhcCCCCceeEEC
Q psy10042         89 NIRLGLGDKVAFYW  102 (102)
Q Consensus        89 h~~~~~~~~~Aii~  102 (102)
                      |+.. ++|++||||
T Consensus        81 h~~~-~~d~~Ali~   93 (643)
T d1pg4a_          81 HLQE-NGDRTAIIW   93 (643)
T ss_dssp             GHHH-HTTSEEEEE
T ss_pred             HHHh-CCCCEEEEE
Confidence            9864 689999985

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=1.9e-20  Score=144.75  Aligned_cols=78  Identities=29%  Similarity=0.537  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHhhh-cccccCCCCCceecccCCCCC-CCCcceecCCCcchhhhHHhhhhhhcCCCCcee
Q psy10042         22 AKYQEVYKKSIECPEEFWGQIAKQ-FHWETPIDLDRFHSHNFNISN-GPISIKWLEGATTNICYNLLDRNIRLGLGDKVA   99 (102)
Q Consensus        22 ~~y~~l~~~S~~~~~~FW~~~~~~-l~w~~~~~~~~v~~~~~~~~~-~~~~~~WF~gg~lN~a~N~Ldrh~~~~~~~~~A   99 (102)
                      ++|++||+||+++|+.||.++++. +.|++++  ++++..+.+.+. ..+.++||+||+||+|+||||||+.. ++|++|
T Consensus         1 ~~y~~l~~~Si~~~~~Fw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~wf~~~~lN~~~n~ldr~a~~-~pd~~A   77 (640)
T d1ry2a_           1 QDYQRLHKESIEDPAKFFGSKATQFLNWSKPF--DKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHALK-TPNKKA   77 (640)
T ss_dssp             CHHHHHHHHHHHCHHHHHHHHHHHHCCEEECC--SCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHHTT-CTTSEE
T ss_pred             CCHHHHHHHHHhCHHHHHHHHHHhheeEecCC--eEeeccCCccCCCCCCCCcCCCCCchhHHHHHHHHHHhh-CCCCEE
Confidence            379999999999999999999886 8999998  999865432211 23457999999999999999999865 689999


Q ss_pred             EEC
Q psy10042        100 FYW  102 (102)
Q Consensus       100 ii~  102 (102)
                      |||
T Consensus        78 li~   80 (640)
T d1ry2a_          78 IIF   80 (640)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            985