Psyllid ID: psy10058

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------6
Protein Sequence
MLSYPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTPR
Secondary Structure (PSIPRED)
ccccccccccccEEEcccccccccHHHHHHHHHHcccccccEEEEEEcccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHEEccccccccHHHHHHHHHHHccccccEEEEEEEcccccEEEccc
Coil and Loop (DISEMBL)
mlsypqkhdlnslrvlgsvgepinpeaWQWYyhsigggkcsivdtfwqtetgghvltpr
Flexible Loop (DISEMBL)
mlsypqkhdlnslRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQtetgghvltpr
Low Complexity Region (SEG)
MLSYPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTPR
Disordered region (IsUnstruct)
************LRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGG******
Disordered Region (DISOPRED)
**SY*QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTPR
Disordered Region (DISEMBL)
MLSYPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTPR
Disordered Region (DISPRO)
*LSYPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTPR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLSYPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTPR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	59	2.2.26 [Sep-21-2011]
A4G3L8	660	Acetyl-coenzyme A synthet	yes	N/A	0.949	0.084	0.75	5e-22
Q8XY11	660	Acetyl-coenzyme A synthet	yes	N/A	0.949	0.084	0.714	8e-22
B2U6V1	660	Acetyl-coenzyme A synthet	yes	N/A	0.932	0.083	0.727	1e-21
Q46Z41	660	Acetyl-coenzyme A synthet	yes	N/A	0.932	0.083	0.709	1e-20
P31638	660	Acetyl-coenzyme A synthet	yes	N/A	0.932	0.083	0.709	2e-20
Q1LL27	660	Acetyl-coenzyme A synthet	yes	N/A	0.932	0.083	0.709	2e-20
B3R1X2	660	Acetyl-coenzyme A synthet	yes	N/A	0.932	0.083	0.690	3e-20
Q7M9Y2	654	Acetyl-coenzyme A synthet	yes	N/A	0.915	0.082	0.685	4e-20
O25686	662	Acetyl-coenzyme A synthet	yes	N/A	0.915	0.081	0.685	9e-20
B5Z6E9	662	Acetyl-coenzyme A synthet	yes	N/A	0.915	0.081	0.685	9e-20

>sp|A4G3L8|ACSA_HERAR Acetyl-coenzyme A synthetase OS=Herminiimonas arsenicoxydans GN=acsA PE=3 SV=1

 Score =  102 bits (255), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/56 (75%), Positives = 51/56 (91%)

Query: 3   SYPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           ++P K+DL+SLR+LGSVGEPINPEAW WYY +IGG +C IVDTFWQTETGGHV++P
Sbjct: 380 THPSKYDLSSLRLLGSVGEPINPEAWMWYYKNIGGERCPIVDTFWQTETGGHVISP 435

Herminiimonas arsenicoxydans (taxid: 204773)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 1

>sp|Q8XY11|ACSA_RALSO Acetyl-coenzyme A synthetase OS=Ralstonia solanacearum (strain GMI1000) GN=acsA PE=3 SV=1

 Score =  102 bits (253), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 40/56 (71%), Positives = 53/56 (94%)

Query: 3   SYPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           S+P+++DL+SLR+LG+VGEPINPEAW WY+ +IGGG+C IVDTFWQTETGGH+++P
Sbjct: 380 SHPKRYDLSSLRLLGTVGEPINPEAWMWYHTNIGGGRCPIVDTFWQTETGGHMISP 435

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|B2U6V1|ACSA_RALPJ Acetyl-coenzyme A synthetase OS=Ralstonia pickettii (strain 12J) GN=acsA PE=3 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/55 (72%), Positives = 52/55 (94%)

Query: 4   YPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           +P+++DL+SLR+LG+VGEPINPEAW WY+ +IGGG+C IVDTFWQTETGGH++TP
Sbjct: 381 HPKQYDLSSLRLLGTVGEPINPEAWMWYHTNIGGGRCPIVDTFWQTETGGHMMTP 435

Ralstonia pickettii (strain 12J) (taxid: 402626)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q46Z41|ACSA_CUPPJ Acetyl-coenzyme A synthetase OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=acsA PE=3 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/55 (70%), Positives = 50/55 (90%)

Query: 4   YPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           +P+++DL+SLR+LG+VGEPINPEAW WYY +IG  +C IVDTFWQTETGGH++TP
Sbjct: 381 HPKQYDLSSLRLLGTVGEPINPEAWMWYYKNIGNERCPIVDTFWQTETGGHMITP 435

Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|P31638|ACSA_CUPNH Acetyl-coenzyme A synthetase OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acsA PE=3 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/55 (70%), Positives = 50/55 (90%)

Query: 4   YPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           +P+++DL+SLR+LG+VGEPINPEAW WYY +IG  +C IVDTFWQTETGGH++TP
Sbjct: 381 HPKQYDLSSLRLLGTVGEPINPEAWMWYYKNIGNERCPIVDTFWQTETGGHMITP 435

Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q1LL27|ACSA_RALME Acetyl-coenzyme A synthetase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=acsA PE=3 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/55 (70%), Positives = 50/55 (90%)

Query: 4   YPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           +P+++DL+SLR+LG+VGEPINPEAW WYY +IG  +C IVDTFWQTETGGH++TP
Sbjct: 381 HPKQYDLSSLRLLGTVGEPINPEAWMWYYKNIGRERCPIVDTFWQTETGGHMITP 435

Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) (taxid: 266264)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|B3R1X2|ACSA_CUPTR Acetyl-coenzyme A synthetase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=acsA PE=3 SV=1

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/55 (69%), Positives = 49/55 (89%)

Query: 4   YPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           +P+++DL+SLR+LG+VGEPINPEAW WYY ++G   C IVDTFWQTETGGH++TP
Sbjct: 381 HPKQYDLSSLRLLGTVGEPINPEAWMWYYKNVGNENCPIVDTFWQTETGGHMITP 435

Cupriavidus taiwanensis (strain R1 / LMG 19424) (taxid: 164546)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q7M9Y2|ACSA_WOLSU Acetyl-coenzyme A synthetase OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=acsA PE=3 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/54 (68%), Positives = 51/54 (94%)

Query: 5   PQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           P+K++L++L+VLG+VGEPINP+AW WYY+ IGGG+C IVDT+WQTETGGH+++P
Sbjct: 374 PKKYNLSNLKVLGTVGEPINPDAWNWYYNEIGGGQCPIVDTWWQTETGGHMISP 427

Wolinella succinogenes (taxid: 844)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|O25686|ACSA_HELPY Acetyl-coenzyme A synthetase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=acsA PE=3 SV=1

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 37/54 (68%), Positives = 47/54 (87%)

Query: 5   PQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           P K++L SL+VLG+VGEPINP AW+W+Y  IG  KCSIVDT+WQTETGGH+++P
Sbjct: 378 PSKYNLESLKVLGTVGEPINPTAWKWFYEKIGNSKCSIVDTWWQTETGGHIISP 431

Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|B5Z6E9|ACSA_HELPG Acetyl-coenzyme A synthetase OS=Helicobacter pylori (strain G27) GN=acsA PE=3 SV=1

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 37/54 (68%), Positives = 47/54 (87%)

Query: 5   PQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           P K++L SL+VLG+VGEPINP AW+W+Y  IG  KCSIVDT+WQTETGGH+++P
Sbjct: 378 PSKYNLESLKVLGTVGEPINPTAWKWFYEKIGNSKCSIVDTWWQTETGGHIISP 431

Helicobacter pylori (strain G27) (taxid: 563041)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	59
372488651	658	acetate--CoA ligase [Dechlorosoma suillu	0.915	0.082	0.796	6e-21
134094157	660	acetyl-CoA synthetase [Herminiimonas ars	0.949	0.084	0.75	2e-20
119898705	654	acetyl-CoA synthetase [Azoarcus sp. BH72	0.932	0.084	0.727	2e-20
124266578	633	acetyl-coenzyme A synthetase [Methylibiu	0.932	0.086	0.745	2e-20
257095293	654	acetyl-CoA synthetase [Candidatus Accumu	0.915	0.082	0.759	3e-20
241763133	664	acetate/CoA ligase [Acidovorax delafield	0.932	0.082	0.745	3e-20
299066442	660	Acetyl-coenzyme A synthetase [Ralstonia	0.949	0.084	0.714	3e-20
71907260	654	acetyl-CoA synthetase [Dechloromonas aro	0.932	0.084	0.727	3e-20
17546671	660	acetyl-CoA synthetase [Ralstonia solanac	0.949	0.084	0.714	4e-20
358636736	657	acetyl-CoA synthetase [Azoarcus sp. KH32	0.932	0.083	0.727	4e-20

>gi|372488651|ref|YP_005028216.1| acetate--CoA ligase [Dechlorosoma suillum PS] gi|359355204|gb|AEV26375.1| acetate--CoA ligase [Dechlorosoma suillum PS]

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 43/54 (79%), Positives = 50/54 (92%)

Query: 5   PQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           P+K+DL SLR+LGSVGEPINPEAW WYY+ IGGG+C IVDTFWQTETGGH++TP
Sbjct: 379 PKKYDLTSLRLLGSVGEPINPEAWMWYYNEIGGGRCPIVDTFWQTETGGHMITP 432

Source: Dechlorosoma suillum PS

Species: Azospira oryzae

Genus: Azospira

Family: Rhodocyclaceae

Order: Rhodocyclales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|134094157|ref|YP_001099232.1| acetyl-CoA synthetase [Herminiimonas arsenicoxydans] gi|166919471|sp|A4G3L8.1|ACSA_HERAR RecName: Full=Acetyl-coenzyme A synthetase; Short=AcCoA synthetase; Short=Acs; AltName: Full=Acetate--CoA ligase; AltName: Full=Acyl-activating enzyme gi|133738060|emb|CAL61105.1| Acetyl-coenzyme A synthetase (Acetate--CoA ligase) (Acyl-activating enzyme) [Herminiimonas arsenicoxydans]

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/56 (75%), Positives = 51/56 (91%)

Query: 3   SYPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           ++P K+DL+SLR+LGSVGEPINPEAW WYY +IGG +C IVDTFWQTETGGHV++P
Sbjct: 380 THPSKYDLSSLRLLGSVGEPINPEAWMWYYKNIGGERCPIVDTFWQTETGGHVISP 435

Source: Herminiimonas arsenicoxydans

Species: Herminiimonas arsenicoxydans

Genus: Herminiimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|119898705|ref|YP_933918.1| acetyl-CoA synthetase [Azoarcus sp. BH72] gi|119671118|emb|CAL95031.1| probable acetyl-coenzyme A synthetase [Azoarcus sp. BH72]

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/55 (72%), Positives = 51/55 (92%)

Query: 4   YPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           +P+ +DL+SLR+LGSVGEPINP AW+WYY ++GGG+C IVDTFWQTETGGH++TP
Sbjct: 377 HPKNYDLSSLRILGSVGEPINPAAWEWYYENVGGGRCPIVDTFWQTETGGHMITP 431

Source: Azoarcus sp. BH72

Species: Azoarcus sp. BH72

Genus: Azoarcus

Family: Rhodocyclaceae

Order: Rhodocyclales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|124266578|ref|YP_001020582.1| acetyl-coenzyme A synthetase [Methylibium petroleiphilum PM1] gi|124259353|gb|ABM94347.1| acetyl-coenzyme A synthetase [Methylibium petroleiphilum PM1]

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/55 (74%), Positives = 51/55 (92%)

Query: 4   YPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           +P+K+DL+SLR+LGSVGEPINP AW+WY+  IGGG+C IVDTFWQTETGGH++TP
Sbjct: 353 HPKKYDLSSLRILGSVGEPINPAAWEWYHQHIGGGRCPIVDTFWQTETGGHMITP 407

Source: Methylibium petroleiphilum PM1

Species: Methylibium petroleiphilum

Genus: Methylibium

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|257095293|ref|YP_003168934.1| acetyl-CoA synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047817|gb|ACV37005.1| acetate/CoA ligase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1]

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/54 (75%), Positives = 50/54 (92%)

Query: 5   PQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           P ++DL+SLR+LG+VGEPINP AWQWYY S+GGG+C IVDTFWQTETGGH++TP
Sbjct: 378 PTQYDLSSLRLLGTVGEPINPAAWQWYYDSVGGGRCPIVDTFWQTETGGHMITP 431

Source: Candidatus Accumulibacter phosphatis clade IIA str. UW-1

Species: Candidatus Accumulibacter phosphatis

Genus: Candidatus Accumulibacter

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|241763133|ref|ZP_04761193.1| acetate/CoA ligase [Acidovorax delafieldii 2AN] gi|241367758|gb|EER62012.1| acetate/CoA ligase [Acidovorax delafieldii 2AN]

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/55 (74%), Positives = 49/55 (89%)

Query: 4   YPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           +P + DL+SLR+LGSVGEPINPEAW WYY ++GG +C IVDTFWQTETGGHV+TP
Sbjct: 385 HPARSDLSSLRILGSVGEPINPEAWMWYYKNVGGERCPIVDTFWQTETGGHVITP 439

Source: Acidovorax delafieldii 2AN

Species: Acidovorax delafieldii

Genus: Acidovorax

Family: Comamonadaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|299066442|emb|CBJ37627.1| Acetyl-coenzyme A synthetase [Ralstonia solanacearum CMR15]

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/56 (71%), Positives = 53/56 (94%)

Query: 3   SYPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           S+P+++DL+SLR+LG+VGEPINPEAW WY+ +IGGG+C IVDTFWQTETGGH+++P
Sbjct: 380 SHPKRYDLSSLRLLGTVGEPINPEAWMWYHTNIGGGRCPIVDTFWQTETGGHMISP 435

Source: Ralstonia solanacearum CMR15

Species: Ralstonia solanacearum

Genus: Ralstonia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|71907260|ref|YP_284847.1| acetyl-CoA synthetase [Dechloromonas aromatica RCB] gi|71846881|gb|AAZ46377.1| acetyl-coenzyme A synthetase [Dechloromonas aromatica RCB]

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/55 (72%), Positives = 50/55 (90%)

Query: 4   YPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           +P+ +DL+SLR+LGSVGEPINP AW WYY ++GGG+C IVDTFWQTETGGH++TP
Sbjct: 376 HPKSYDLSSLRILGSVGEPINPAAWTWYYENVGGGRCPIVDTFWQTETGGHMITP 430

Source: Dechloromonas aromatica RCB

Species: Dechloromonas aromatica

Genus: Dechloromonas

Family: Rhodocyclaceae

Order: Rhodocyclales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|17546671|ref|NP_520073.1| acetyl-CoA synthetase [Ralstonia solanacearum GMI1000] gi|37077503|sp|Q8XY11.1|ACSA_RALSO RecName: Full=Acetyl-coenzyme A synthetase; Short=AcCoA synthetase; Short=Acs; AltName: Full=Acetate--CoA ligase; AltName: Full=Acyl-activating enzyme gi|17428970|emb|CAD15654.1| probable acetyl-coenzyme a synthetase (acetate--coa ligase) (acyl-activating enzyme) protein [Ralstonia solanacearum GMI1000]

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/56 (71%), Positives = 53/56 (94%)

Query: 3   SYPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           S+P+++DL+SLR+LG+VGEPINPEAW WY+ +IGGG+C IVDTFWQTETGGH+++P
Sbjct: 380 SHPKRYDLSSLRLLGTVGEPINPEAWMWYHTNIGGGRCPIVDTFWQTETGGHMISP 435

Source: Ralstonia solanacearum GMI1000

Species: Ralstonia solanacearum

Genus: Ralstonia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|358636736|dbj|BAL24033.1| acetyl-CoA synthetase [Azoarcus sp. KH32C]

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/55 (72%), Positives = 50/55 (90%)

Query: 4   YPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           +P K+DL+SLR+LGSVGEPINP AW+WYY ++GG +C IVDTFWQTETGGH++TP
Sbjct: 377 HPTKYDLSSLRILGSVGEPINPAAWEWYYENVGGSRCPIVDTFWQTETGGHMITP 431

Source: Azoarcus sp. KH32C

Species: Azoarcus sp. KH32C

Genus: Azoarcus

Family: Rhodocyclaceae

Order: Rhodocyclales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	59
TIGR_CMR|SPO_1813	654	SPO_1813 "acetyl-coenzyme A sy	0.949	0.085	0.696	5.6e-19
FB|FBgn0012034	670	AcCoAS "Acetyl Coenzyme A synt	0.881	0.077	0.788	7.6e-19
DICTYBASE|DDB_G0277815	674	acsA "acetyl-CoA synthetase" [	0.966	0.084	0.649	4.3e-18
UNIPROTKB|F1NST1	612	ACSS2 "Uncharacterized protein	0.898	0.086	0.716	9.8e-18
TIGR_CMR|CJE_1708	657	CJE_1708 "acetyl-coenzyme A sy	0.915	0.082	0.685	1.4e-17
ZFIN|ZDB-GENE-040718-388	698	acss2 "acyl-CoA synthetase sho	0.881	0.074	0.692	1.6e-17
GENEDB_PFALCIPARUM|PFF1350c	997	PFF1350c "acetyl-coenzyme a sy	0.898	0.053	0.698	3.6e-17
UNIPROTKB|C6KTB4	997	PFF1350c "Acetyl-CoA synthetas	0.898	0.053	0.698	3.6e-17
UNIPROTKB|J9P7N4	701	ACSS2 "Uncharacterized protein	0.881	0.074	0.711	4.3e-17
UNIPROTKB|F1S4Y0	701	ACSS2 "Uncharacterized protein	0.881	0.074	0.711	4.3e-17

TIGR_CMR|SPO_1813 SPO_1813 "acetyl-coenzyme A synthetase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 237 (88.5 bits), Expect = 5.6e-19, P = 5.6e-19
 Identities = 39/56 (69%), Positives = 48/56 (85%)

Query:     3 SYPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
             S+ +KHDL+ LR+LG+VGEPINPEAW WY   +G GKC IVDT+WQTETGGH++TP
Sbjct:   374 SFVEKHDLSDLRLLGTVGEPINPEAWNWYNEVVGKGKCPIVDTWWQTETGGHLMTP 429

GO:0003987 "acetate-CoA ligase activity" evidence=ISS

GO:0009060 "aerobic respiration" evidence=ISS

FB|FBgn0012034 AcCoAS "Acetyl Coenzyme A synthase" [Drosophila melanogaster (taxid:7227)]

 Score = 236 (88.1 bits), Expect = 7.6e-19, P = 7.6e-19
 Identities = 41/52 (78%), Positives = 46/52 (88%)

Query:     7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
             KH+L+ L+VLGSVGEPINPEAW WYY  IG  +CSIVDTFWQTETGGHV+TP
Sbjct:   395 KHNLSGLKVLGSVGEPINPEAWLWYYKYIGKEQCSIVDTFWQTETGGHVITP 446

GO:0003987 "acetate-CoA ligase activity" evidence=ISS;NAS

GO:0008152 "metabolic process" evidence=NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0016208 "AMP binding" evidence=IEA

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=IEA

GO:0048149 "behavioral response to ethanol" evidence=IMP

DICTYBASE|DDB_G0277815 acsA "acetyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)]

 Score = 229 (85.7 bits), Expect = 4.3e-18, P = 4.3e-18
 Identities = 37/57 (64%), Positives = 51/57 (89%)

Query:     2 LSYPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
             +S+ Q+ D +SLRVLGSVGEPINPEAW+W+  ++G G+C+IVDT+WQTE+GGH++TP
Sbjct:   378 ISFTQQSDKSSLRVLGSVGEPINPEAWRWFNTNVGEGRCAIVDTYWQTESGGHLITP 434

GO:0016208 "AMP binding" evidence=IEA;ISS

GO:0006085 "acetyl-CoA biosynthetic process" evidence=ISS

GO:0003987 "acetate-CoA ligase activity" evidence=IEA;ISS

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1NST1 ACSS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 225 (84.3 bits), Expect = 9.8e-18, P = 9.8e-18
 Identities = 38/53 (71%), Positives = 44/53 (83%)

Query:     6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
             +KH   SL+VLG+VGEPINPEAW WYY  +G  +C IVDTFWQTETGGH+LTP
Sbjct:   336 KKHSRKSLKVLGTVGEPINPEAWLWYYRVVGEERCPIVDTFWQTETGGHMLTP 388

GO:0003824 "catalytic activity" evidence=IEA

TIGR_CMR|CJE_1708 CJE_1708 "acetyl-coenzyme A synthetase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 224 (83.9 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 37/54 (68%), Positives = 47/54 (87%)

Query:     5 PQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
             P+K+DL++L VLG+VGEPINP AW+W+Y  IGG K  IVDT+WQTETGGH++TP
Sbjct:   372 PRKYDLSTLEVLGTVGEPINPSAWKWFYDEIGGTKSPIVDTWWQTETGGHMITP 425

GO:0003987 "acetate-CoA ligase activity" evidence=ISS

GO:0006090 "pyruvate metabolic process" evidence=ISS

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0006094 "gluconeogenesis" evidence=ISS

GO:0006096 "glycolysis" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

GO:0030634 "carbon fixation by acetyl-CoA pathway" evidence=ISS

ZFIN|ZDB-GENE-040718-388 acss2 "acyl-CoA synthetase short-chain family member 2" [Danio rerio (taxid:7955)]

 Score = 224 (83.9 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 36/52 (69%), Positives = 45/52 (86%)

Query:     7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
             K+   SL++LG+VGEPINPEAWQWYY+ +G  +C +VDTFWQTETGGHV+TP
Sbjct:   423 KYKRTSLKILGTVGEPINPEAWQWYYNVVGEKRCPVVDTFWQTETGGHVMTP 474

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GENEDB_PFALCIPARUM|PFF1350c PFF1350c "acetyl-coenzyme a synthetase" [Plasmodium falciparum (taxid:5833)]

 Score = 223 (83.6 bits), Expect = 3.6e-17, P = 3.6e-17
 Identities = 37/53 (69%), Positives = 46/53 (86%)

Query:     6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
             QK+DL+S R+LGSVGEPINPE W+WYY+ +G  KC+IVDT+WQTETGG V+ P
Sbjct:   665 QKYDLSSCRILGSVGEPINPETWRWYYNVVGKKKCTIVDTYWQTETGGIVIAP 717

GO:0003987 "acetate-CoA ligase activity" evidence=ISS

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

UNIPROTKB|C6KTB4 PFF1350c "Acetyl-CoA synthetase" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 223 (83.6 bits), Expect = 3.6e-17, P = 3.6e-17
 Identities = 37/53 (69%), Positives = 46/53 (86%)

Query:     6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
             QK+DL+S R+LGSVGEPINPE W+WYY+ +G  KC+IVDT+WQTETGG V+ P
Sbjct:   665 QKYDLSSCRILGSVGEPINPETWRWYYNVVGKKKCTIVDTYWQTETGGIVIAP 717

GO:0003987 "acetate-CoA ligase activity" evidence=ISS

UNIPROTKB|J9P7N4 ACSS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 220 (82.5 bits), Expect = 4.3e-17, P = 4.3e-17
 Identities = 37/52 (71%), Positives = 44/52 (84%)

Query:     7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
             +H   SL+VLG+VGEPINPEAW WY+  +G  +CSIVDTFWQTETGGH+LTP
Sbjct:   426 RHSRASLQVLGTVGEPINPEAWLWYHRVVGAQRCSIVDTFWQTETGGHMLTP 477

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|F1S4Y0 ACSS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 220 (82.5 bits), Expect = 4.3e-17, P = 4.3e-17
 Identities = 37/52 (71%), Positives = 43/52 (82%)

Query:     7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
             KH   SL+VLG+VGEPINPEAW WY+  +G  +C IVDTFWQTETGGH+LTP
Sbjct:   426 KHSRASLKVLGTVGEPINPEAWLWYHRVVGDNRCPIVDTFWQTETGGHMLTP 477

GO:0006085 "acetyl-CoA biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003987 "acetate-CoA ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8XY11	ACSA_RALSO	6, ., 2, ., 1, ., 1	0.7142	0.9491	0.0848	yes	N/A
Q5SIW6	ACSA_THET8	6, ., 2, ., 1, ., 1	0.7222	0.9152	0.0833	yes	N/A
B2U6V1	ACSA_RALPJ	6, ., 2, ., 1, ., 1	0.7272	0.9322	0.0833	yes	N/A
O68040	ACSA_RHOCB	6, ., 2, ., 1, ., 1	0.7735	0.8983	0.0807	yes	N/A
A0R5G1	ACSA_MYCS2	6, ., 2, ., 1, ., 1	0.7037	0.9152	0.0574	yes	N/A
Q7M9Y2	ACSA_WOLSU	6, ., 2, ., 1, ., 1	0.6851	0.9152	0.0825	yes	N/A
Q4FVA1	ACSA_PSYA2	6, ., 2, ., 1, ., 1	0.6607	0.9491	0.0857	yes	N/A
A1UR36	ACSA_BARBK	6, ., 2, ., 1, ., 1	0.6071	0.9491	0.0858	yes	N/A
B5Z6E9	ACSA_HELPG	6, ., 2, ., 1, ., 1	0.6851	0.9152	0.0815	yes	N/A
Q1CUA3	ACSA_HELPH	6, ., 2, ., 1, ., 1	0.6851	0.9152	0.0815	yes	N/A
Q8DKH2	ACSA_THEEB	6, ., 2, ., 1, ., 1	0.7169	0.8983	0.0807	yes	N/A
Q62AD1	ACSA_BURMA	6, ., 2, ., 1, ., 1	0.6363	0.9322	0.0833	yes	N/A
Q0AFF1	ACSA_NITEC	6, ., 2, ., 1, ., 1	0.6851	0.9152	0.0824	yes	N/A
A1W1D6	ACSA_CAMJJ	6, ., 2, ., 1, ., 1	0.6851	0.9152	0.0821	yes	N/A
A3P2K7	ACSA_BURP0	6, ., 2, ., 1, ., 1	0.6363	0.9322	0.0833	yes	N/A
A4G3L8	ACSA_HERAR	6, ., 2, ., 1, ., 1	0.75	0.9491	0.0848	yes	N/A
Q17WR1	ACSA_HELAH	6, ., 2, ., 1, ., 1	0.6666	0.9152	0.0815	yes	N/A
Q46Z41	ACSA_CUPPJ	6, ., 2, ., 1, ., 1	0.7090	0.9322	0.0833	yes	N/A
Q63NC4	ACSA_BURPS	6, ., 2, ., 1, ., 1	0.6363	0.9322	0.0833	yes	N/A
Q39EK2	ACSA_BURS3	6, ., 2, ., 1, ., 1	0.6363	0.9322	0.0833	yes	N/A
A2RYW5	ACSA_BURM9	6, ., 2, ., 1, ., 1	0.6363	0.9322	0.0833	yes	N/A
Q2NR28	ACSA_SODGM	6, ., 2, ., 1, ., 1	0.75	0.8135	0.0736	yes	N/A
A3MG40	ACSA_BURM7	6, ., 2, ., 1, ., 1	0.6363	0.9322	0.0833	yes	N/A
B6JKX8	ACSA_HELP2	6, ., 2, ., 1, ., 1	0.6851	0.9152	0.0815	yes	N/A
Q9VP61	ACSA_DROME	6, ., 2, ., 1, ., 1	0.7884	0.8813	0.0776	yes	N/A
C1D6V9	ACSA_LARHH	6, ., 2, ., 1, ., 1	0.6851	0.9152	0.0826	yes	N/A
Q7NSY7	ACSA_CHRVO	6, ., 2, ., 1, ., 1	0.6851	0.9152	0.0825	yes	N/A
P31638	ACSA_CUPNH	6, ., 2, ., 1, ., 1	0.7090	0.9322	0.0833	yes	N/A
O25686	ACSA_HELPY	6, ., 2, ., 1, ., 1	0.6851	0.9152	0.0815	yes	N/A
Q72J95	ACSA_THET2	6, ., 2, ., 1, ., 1	0.7222	0.9152	0.0833	yes	N/A
A0L576	ACSA_MAGSM	6, ., 2, ., 1, ., 1	0.7659	0.7966	0.0729	yes	N/A
Q72LY9	ACSA_LEPIC	6, ., 2, ., 1, ., 1	0.6964	0.9491	0.0847	yes	N/A
A1UWN5	ACSA_BURMS	6, ., 2, ., 1, ., 1	0.6363	0.9322	0.0833	yes	N/A
A8FNJ7	ACSA_CAMJ8	6, ., 2, ., 1, ., 1	0.6851	0.9152	0.0821	yes	N/A
Q1AXQ5	ACSA_RUBXD	6, ., 2, ., 1, ., 1	0.6792	0.8983	0.0822	yes	N/A
B2JD61	ACSA_BURP8	6, ., 2, ., 1, ., 1	0.6545	0.9322	0.0833	yes	N/A
Q54Z60	ACSA_DICDI	6, ., 2, ., 1, ., 1	0.6491	0.9661	0.0845	yes	N/A
A3NH07	ACSA_BURP6	6, ., 2, ., 1, ., 1	0.6363	0.9322	0.0833	yes	N/A
Q3JH62	ACSA_BURP1	6, ., 2, ., 1, ., 1	0.6363	0.9322	0.0833	yes	N/A
C1AA44	ACSA_GEMAT	6, ., 2, ., 1, ., 1	0.6909	0.9322	0.0840	yes	N/A
Q9PMD2	ACSA_CAMJE	6, ., 2, ., 1, ., 1	0.6851	0.9152	0.0821	yes	N/A
Q1LL27	ACSA_RALME	6, ., 2, ., 1, ., 1	0.7090	0.9322	0.0833	yes	N/A
Q1QEB6	ACSA_PSYCK	6, ., 2, ., 1, ., 1	0.6428	0.9491	0.0854	yes	N/A
Q3SLF4	ACSA_THIDA	6, ., 2, ., 1, ., 1	0.6851	0.9152	0.0824	yes	N/A
B3R1X2	ACSA_CUPTR	6, ., 2, ., 1, ., 1	0.6909	0.9322	0.0833	yes	N/A
Q2T3N9	ACSA_BURTA	6, ., 2, ., 1, ., 1	0.6363	0.9322	0.0833	yes	N/A
Q8EYG2	ACSA_LEPIN	6, ., 2, ., 1, ., 1	0.6964	0.9491	0.0847	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	59
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	1e-35
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	5e-35
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	2e-33
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	6e-22
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	1e-20
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	6e-15
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	2e-12
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	2e-10
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	3e-10
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	1e-08
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	3e-08
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	1e-07
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	1e-06
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	4e-06
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	4e-06
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	4e-05
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	2e-04
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	0.004

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score =  124 bits (315), Expect = 1e-35
 Identities = 39/54 (72%), Positives = 49/54 (90%)

Query: 5   PQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           P+K+DL+SLR+LGSVGEPINPEAW+WYY  +GG +C IVDT+WQTETGG ++TP
Sbjct: 361 PKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITP 414

Length = 637

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score =  123 bits (310), Expect = 5e-35
 Identities = 41/55 (74%), Positives = 49/55 (89%)

Query: 4   YPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           +P+KHDL+SLR+LGSVGEPINPEAW WYY  IG  +C IVDT+WQTETGGH++TP
Sbjct: 340 WPKKHDLSSLRLLGSVGEPINPEAWMWYYEVIGKERCPIVDTWWQTETGGHMITP 394

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score =  118 bits (298), Expect = 2e-33
 Identities = 38/54 (70%), Positives = 46/54 (85%)

Query: 5   PQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
            +KHDL+SLR+LGSVGEPINPEAW WYY  +G  +C IVDT+WQTETGG ++TP
Sbjct: 352 VKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITP 405

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 86.1 bits (213), Expect = 6e-22
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 4   YPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           Y  +H   SLRVLGSVGEPINP AW+W+++ +G  +C I DT+WQTETGG ++TP
Sbjct: 390 YVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITP 444

Length = 666

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 82.3 bits (204), Expect = 1e-20
 Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 3/55 (5%)

Query: 5   PQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTPR 59
            + +DL+SLRVLGS GEP+NPEA++W+Y ++G     I+D + QTETG   +  R
Sbjct: 284 GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALG---VWILDIYGQTETGMGFIAGR 335

Length = 528

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 66.1 bits (162), Expect = 6e-15
 Identities = 25/58 (43%), Positives = 36/58 (62%)

Query: 1   MLSYPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
             +  + HDL+SLRVLGS GEP +PE+W W +  +GGG+  I++    TE  G +L  
Sbjct: 211 GDAPVEGHDLSSLRVLGSTGEPWDPESWLWLFERVGGGRAPIINYSGGTEISGGILGN 268

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 59.1 bits (144), Expect = 2e-12
 Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 6   QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV 55
           +K+DL+SLR + SVGEP+NPE  +W     G     I D +W TETGG +
Sbjct: 318 KKYDLSSLRHILSVGEPLNPEVVRWGMKVFG---LPIHDNWWMTETGGIM 364

Length = 570

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 53.6 bits (129), Expect = 2e-10
 Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 3/47 (6%)

Query: 7   KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGG 53
           ++DL+SLR + SVGEP+NPE   W    +G     I DT+WQTETG 
Sbjct: 203 RYDLSSLRHIASVGEPLNPEVVVWGEKVLG---MPIHDTWWQTETGA 246

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 53.1 bits (128), Expect = 3e-10
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 6   QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTPR 59
           +K+DL+SLR++ S GEP+ PE  +        G   +V+ +  TET        
Sbjct: 242 KKYDLSSLRLVLSGGEPLPPELLRRLRE--RFGGVPLVNGYGPTETTVVATANL 293

Length = 412

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score = 48.4 bits (116), Expect = 1e-08
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 7   KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
            +DL+SLR+L S GEP++PE  + +          I++ +  TET     T 
Sbjct: 112 GYDLSSLRLLISGGEPLSPELLERFE---ERPGAPILEGYGLTETSVVTSTN 160

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 46.9 bits (112), Expect = 3e-08
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 6   QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLT 57
           +KHDL+SLR L   GEP++     W   ++G     ++D +WQTETG  +L 
Sbjct: 350 RKHDLSSLRALFLAGEPLDEPTASWISEALG---VPVIDNYWQTETGWPILA 398

Length = 629

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 45.3 bits (107), Expect = 1e-07
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 6   QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL 56
           +KHDL+SL  L   GEP++     W    +G     ++D +WQTETG  VL
Sbjct: 349 RKHDLSSLHWLFLAGEPLDEPTAHWITDGLGK---PVIDNYWQTETGWPVL 396

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 42.7 bits (101), Expect = 1e-06
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 3   SYPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
            Y +K+DL+SLR L   GE ++    +W   ++G     ++D +WQTETG  +   
Sbjct: 337 EYIKKYDLSSLRALFLAGERLDSPTLEWIEKTLG---VPVIDHWWQTETGWPITAN 389

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 41.2 bits (97), Expect = 4e-06
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 5   PQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETG 52
              +D + LR + S GEP+NPE   W+  + G     I D + QTETG
Sbjct: 191 LSSYDFSHLRHVVSAGEPLNPEVIDWWRAATG---LPIRDGYGQTETG 235

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 41.3 bits (97), Expect = 4e-06
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

Query: 11  NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETG 52
             LRV  S GEP+NPE  +W+  ++G    +I D + QTETG
Sbjct: 205 LKLRVASSAGEPLNPEVVRWFQANLG---VTIHDHYGQTETG 243

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 38.2 bits (90), Expect = 4e-05
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 8   HDLNSLRVLGSVGEPINPEAWQWYYHSIG 36
           HDL++LR +GS G P+ PE + W Y  + 
Sbjct: 380 HDLSALRTIGSTGSPLPPEGFDWVYEHVK 408

Length = 655

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 36.1 bits (84), Expect = 2e-04
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 8   HDLNSLRVLGSVGEPINPEAWQWYYHSI 35
           HDL+SLR + S G P+ PE + W Y  +
Sbjct: 353 HDLSSLRTILSTGSPLPPEGFDWVYSHV 380

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 32.8 bits (75), Expect = 0.004
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 7   KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTET 51
           K+DL+SLR   + GEP+NPE +  +    G     +++ F QTET
Sbjct: 297 KYDLSSLRYCTTAGEPLNPEVFNTFKEKTG---IKLMEGFGQTET 338

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	59
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	99.29
KOG1176|consensus	537		98.84
PTZ00237	647	acetyl-CoA synthetase; Provisional	98.84
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	98.7
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	98.7
PTZ00342	746	acyl-CoA synthetase; Provisional	98.7
PRK07529	632	AMP-binding domain protein; Validated	98.68
PLN02654	666	acetate-CoA ligase	98.66
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	98.66
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	98.66
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	98.62
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	98.61
PRK07788	549	acyl-CoA synthetase; Validated	98.6
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	98.6
PRK09274	552	peptide synthase; Provisional	98.57
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	98.56
PRK04319	570	acetyl-CoA synthetase; Provisional	98.56
PRK13382	537	acyl-CoA synthetase; Provisional	98.55
KOG1175|consensus	626		98.54
PLN03052	728	acetate--CoA ligase; Provisional	98.52
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	98.51
KOG1256|consensus	691		98.51
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	98.51
PLN02736	651	long-chain acyl-CoA synthetase	98.51
PRK00174	637	acetyl-CoA synthetase; Provisional	98.51
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	98.5
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	98.49
PLN02860	563	o-succinylbenzoate-CoA ligase	98.48
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	98.47
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.47
PRK13383	516	acyl-CoA synthetase; Provisional	98.45
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	98.45
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	98.44
PRK06060	705	acyl-CoA synthetase; Validated	98.43
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	98.43
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	98.43
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	98.41
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	98.4
KOG1180|consensus	678		98.4
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.4
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	98.39
PRK13391	511	acyl-CoA synthetase; Provisional	98.39
PRK12582	624	acyl-CoA synthetase; Provisional	98.37
PLN02574	560	4-coumarate--CoA ligase-like	98.37
PRK06145	497	acyl-CoA synthetase; Validated	98.37
PLN03051	499	acyl-activating enzyme; Provisional	98.36
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	98.36
PRK06018	542	putative acyl-CoA synthetase; Provisional	98.35
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	98.35
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	98.35
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	98.34
PRK07470	528	acyl-CoA synthetase; Validated	98.34
PRK05852	534	acyl-CoA synthetase; Validated	98.34
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	98.33
PRK08180	614	feruloyl-CoA synthase; Reviewed	98.33
PRK12583	558	acyl-CoA synthetase; Provisional	98.32
PRK07787	471	acyl-CoA synthetase; Validated	98.31
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	98.3
PRK08316	523	acyl-CoA synthetase; Validated	98.3
PRK07514	504	malonyl-CoA synthase; Validated	98.29
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	98.29
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	98.29
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	98.29
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	98.28
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	98.28
PLN02430	660	long-chain-fatty-acid-CoA ligase	98.28
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	98.28
PLN02246	537	4-coumarate--CoA ligase	98.28
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	98.27
PRK06839	496	acyl-CoA synthetase; Validated	98.26
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	98.26
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	98.25
PRK13390	501	acyl-CoA synthetase; Provisional	98.24
PRK06188	524	acyl-CoA synthetase; Validated	98.22
PRK07798	533	acyl-CoA synthetase; Validated	98.22
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	98.2
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	98.2
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	98.19
PRK08315	559	AMP-binding domain protein; Validated	98.19
PLN02861	660	long-chain-fatty-acid-CoA ligase	98.19
PRK10946	536	entE enterobactin synthase subunit E; Provisional	98.18
PTZ00216	700	acyl-CoA synthetase; Provisional	98.17
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	98.17
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	98.17
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	98.16
PRK12467	3956	peptide synthase; Provisional	98.15
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	98.14
PLN02614	666	long-chain acyl-CoA synthetase	98.14
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	98.12
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	98.12
PRK09088	488	acyl-CoA synthetase; Validated	98.1
PLN02330	546	4-coumarate--CoA ligase-like 1	98.1
KOG1177|consensus	596		98.09
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	97.98
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	97.98
PRK12316	5163	peptide synthase; Provisional	97.96
PRK05850	578	acyl-CoA synthetase; Validated	97.96
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	97.96
PRK12467	3956	peptide synthase; Provisional	97.96
PRK05857	540	acyl-CoA synthetase; Validated	97.91
PRK12316	5163	peptide synthase; Provisional	97.9
PRK05691	4334	peptide synthase; Validated	97.9
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	97.87
PRK07638	487	acyl-CoA synthetase; Validated	97.86
PRK09192	579	acyl-CoA synthetase; Validated	97.85
PRK05691	4334	peptide synthase; Validated	97.85
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	97.84
PLN02479	567	acetate-CoA ligase	97.83
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	97.83
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	97.77
PLN03102	579	acyl-activating enzyme; Provisional	97.72
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	97.69
PRK07868	994	acyl-CoA synthetase; Validated	97.67
PRK08308	414	acyl-CoA synthetase; Validated	97.61
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	97.61
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	97.32
PRK07867	529	acyl-CoA synthetase; Validated	97.31
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	97.31
PRK08162	545	acyl-CoA synthetase; Validated	97.31
PRK06164	540	acyl-CoA synthetase; Validated	97.18
PRK13388	540	acyl-CoA synthetase; Provisional	97.17
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	97.14
PRK06178	567	acyl-CoA synthetase; Validated	96.67
KOG1179|consensus	649		95.26
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	92.57
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	90.03
PF06543	49	Lac_bphage_repr: Lactococcus bacteriophage repress	87.48

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=99.29  E-value=4.1e-12  Score=78.54  Aligned_cols=51  Identities=51%  Similarity=0.897  Sum_probs=46.2

Q ss_pred             CCCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceeccc
Q psy10058          5 PQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP   58 (59)
Q Consensus         5 ~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~   58 (59)
                      .+++++++||.+.+.|+|++++.++|+.+.+|   +++.+.|||||++++...+
T Consensus       284 ~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g---~~i~d~~gqTEtg~~~~~~  334 (528)
T COG0365         284 GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALG---VWILDIYGQTETGMGFIAG  334 (528)
T ss_pred             cccccchhheeeeccCCCCCHHHHHHHHHHhC---CCEeccccccccCccccCC
Confidence            46789999999999999999999999999999   9999999999999665543

>KOG1176|consensus

Probab=98.84  E-value=8.1e-09  Score=64.32  Aligned_cols=51  Identities=27%  Similarity=0.443  Sum_probs=44.9

Q ss_pred             CCCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceecc
Q psy10058          5 PQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLT   57 (59)
Q Consensus         5 ~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~   57 (59)
                      ...++++++|.+.+||+|+++++.+++.+.+++  ..+.++||+||+++.++.
T Consensus       293 ~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~--~~v~q~YGmTE~~~~~~~  343 (537)
T KOG1176|consen  293 VKKYDLSSLRSVLSGGAPLSPATLEKVKERLPN--VTVIQGYGMTEAGGLITS  343 (537)
T ss_pred             cCcccCCccEEEEecCCCCCHHHHHHHHHhCCC--ceEEEeeccccccCceee
Confidence            346899999999999999999999999999984  789999999999966543

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=98.84  E-value=4.2e-09  Score=65.98  Aligned_cols=47  Identities=23%  Similarity=0.211  Sum_probs=41.8

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..+++++||.+.++|+++++++++++++.++   +.+++.||+||++.++
T Consensus       375 ~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g---~~i~~~yG~TE~~~~~  421 (647)
T PTZ00237        375 SKYDLSNLKEIWCGGEVIEESIPEYIENKLK---IKSSRGYGQTEIGITY  421 (647)
T ss_pred             cccCcchheEEEecCccCCHHHHHHHHHhcC---CCEEeeechHHhChhh
Confidence            3467889999999999999999999999888   8899999999997543

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=98.70  E-value=3.5e-08  Score=61.48  Aligned_cols=46  Identities=41%  Similarity=0.755  Sum_probs=41.0

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH   54 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~   54 (59)
                      ..+++++||.+.++|+++++++++++.+.++   ..+++.||+||++..
T Consensus       349 ~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~---~~~~~~yG~TE~~~~  394 (628)
T TIGR02316       349 RKHDLSSLHWLFLAGEPLDEPTAHWITDGLG---KPVIDNYWQTETGWP  394 (628)
T ss_pred             ccCCccceeEEEEecCCCCHHHHHHHHHHhC---CCEEecccccccCce
Confidence            3567899999999999999999999999888   789999999999743

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=98.70  E-value=4e-08  Score=61.05  Aligned_cols=50  Identities=72%  Similarity=1.404  Sum_probs=42.0

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..++++||.+.++|+++++++++++.+.++..++++++.||+||+++.++
T Consensus       354 ~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~  403 (625)
T TIGR02188       354 KHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMI  403 (625)
T ss_pred             cCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCcee
Confidence            46788999999999999999999999888632267999999999986543

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=98.70  E-value=3.1e-08  Score=63.45  Aligned_cols=43  Identities=19%  Similarity=0.220  Sum_probs=38.5

Q ss_pred             CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058         11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus        11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      .+||.+++||+|+++++.+++...+|   +.++++||+||+++.++
T Consensus       461 ~~lr~~~sGGapl~~~~~~~~~~~~g---~~i~~gYGlTEt~~~~~  503 (746)
T PTZ00342        461 PNLEVILNGGGKLSPKIAEELSVLLN---VNYYQGYGLTETTGPIF  503 (746)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcC---CCEEEeeccCcccceee
Confidence            58999999999999999999998888   88999999999975543

>PRK07529 AMP-binding domain protein; Validated

Probab=98.68  E-value=4.6e-08  Score=61.15  Aligned_cols=46  Identities=26%  Similarity=0.344  Sum_probs=41.1

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..++++||.+++||+++++++.+++++.++   +.+++.||+||++.++
T Consensus       329 ~~~~~slr~v~~gg~~l~~~l~~~~~~~~g---~~l~~~YG~TE~~~~~  374 (632)
T PRK07529        329 GHDISSLRYALCGAAPLPVEVFRRFEAATG---VRIVEGYGLTEATCVS  374 (632)
T ss_pred             CCCccceEEEEEcCCCCCHHHHHHHHHHhC---CcEeeeecccccCccc
Confidence            457889999999999999999999999887   8899999999987544

>PLN02654 acetate-CoA ligase

Probab=98.66  E-value=5e-08  Score=61.43  Aligned_cols=51  Identities=59%  Similarity=1.279  Sum_probs=42.6

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..+++++||.+.++|+|+++++++++.+.+|...+++.+.||+||+++..+
T Consensus       392 ~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~  442 (666)
T PLN02654        392 TRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMI  442 (666)
T ss_pred             ccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeee
Confidence            346788999999999999999999999998732257899999999986543

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=98.66  E-value=3.9e-08  Score=61.11  Aligned_cols=45  Identities=44%  Similarity=0.849  Sum_probs=40.4

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccc
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGG   53 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~   53 (59)
                      ..+++++||.++++|+++++++.+++.+.++   +++++.||+||++.
T Consensus       350 ~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~---~~v~~~YG~TE~~~  394 (629)
T PRK10524        350 RKHDLSSLRALFLAGEPLDEPTASWISEALG---VPVIDNYWQTETGW  394 (629)
T ss_pred             cccChhheeEEEEeCCCCCHHHHHHHHHhcC---CCeEeccccccccc
Confidence            3467889999999999999999999999888   78999999999974

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=98.66  E-value=5.5e-08  Score=57.39  Aligned_cols=48  Identities=35%  Similarity=0.548  Sum_probs=40.5

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..++++||.++++|+++++++.+++++.++.  ..+++.||+||++.+++
T Consensus       273 ~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~--~~i~~~YG~tE~~~~~~  320 (417)
T PF00501_consen  273 KKDLSSLRTVISGGEPLPPDLLRRLRKAFGN--APIINLYGSTETGSIAT  320 (417)
T ss_dssp             TTTGTT-SEEEEESST-CHHHHHHHHHHHTT--SEEEEEEEEGGGSSEEE
T ss_pred             ccccccccccccccccCChhhcccccccccc--ccceecccccccceeee
Confidence            3578889999999999999999999999982  48999999999998765

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=98.62  E-value=5.7e-08  Score=61.45  Aligned_cols=47  Identities=21%  Similarity=0.234  Sum_probs=41.4

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..++++||.+++||+++++++.+++++.++   +.+++.||+||++++++
T Consensus       475 ~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g---~~l~~~YG~TE~~~~~~  521 (718)
T PRK08043        475 PYDFARLRYVVAGAEKLQESTKQLWQDKFG---LRILEGYGVTECAPVVS  521 (718)
T ss_pred             cccccceEEEEEeCccCCHHHHHHHHHHcC---CCeecccCcccccceEE
Confidence            456789999999999999999999999888   88999999999976543

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.61  E-value=1.2e-07  Score=58.49  Aligned_cols=44  Identities=32%  Similarity=0.432  Sum_probs=38.7

Q ss_pred             ccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceecc
Q psy10058         12 SLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLT   57 (59)
Q Consensus        12 ~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~   57 (59)
                      +||.+++||+++++++.+++.+.++.  ..+.+.||+||++++++.
T Consensus       292 ~lr~~~~gg~~~~~~~~~~~~~~~~~--~~i~~~YG~TE~~~~~~~  335 (534)
T COG0318         292 SLRLVLSGGAPLPPELLERFEERFGP--IAILEGYGLTETSPVVTI  335 (534)
T ss_pred             ceEEEEecCCcCCHHHHHHHHHHhCC--CceEEeecccccCceeec
Confidence            39999999999999999999999983  469999999999876543

>PRK07788 acyl-CoA synthetase; Validated

Probab=98.60  E-value=7.7e-08  Score=58.87  Aligned_cols=46  Identities=22%  Similarity=0.261  Sum_probs=40.4

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..++++||.+++||+++++++.+++.+.++   ..+++.||+||++.+.
T Consensus       319 ~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~l~~~YG~TE~~~~~  364 (549)
T PRK07788        319 KYDTSSLKIIFVSGSALSPELATRALEAFG---PVLYNLYGSTEVAFAT  364 (549)
T ss_pred             CCCCCceeEEEEeCCCCCHHHHHHHHHHhC---ccceeccCcchhchhh
Confidence            456789999999999999999999999988   7899999999987543

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=98.60  E-value=1.1e-07  Score=58.42  Aligned_cols=48  Identities=17%  Similarity=0.144  Sum_probs=41.0

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..++++||.+++||+++++++.+++.+.++.  ..+++.||+||++.+++
T Consensus       295 ~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~i~~~YG~TE~~~~~~  342 (539)
T PRK06334        295 ESCLPSLRFVVIGGDAFKDSLYQEALKTFPH--IQLRQGYGTTECSPVIT  342 (539)
T ss_pred             ccccccccEEEECCccCCHHHHHHHHHHCCC--CeEEecccccccCceEE
Confidence            3467899999999999999999999998853  78999999999976543

>PRK09274 peptide synthase; Provisional

Probab=98.57  E-value=1.3e-07  Score=57.80  Aligned_cols=48  Identities=21%  Similarity=0.191  Sum_probs=40.9

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..++++||.+++||+++++++.+++.+.++. ++.+++.||+||++.++
T Consensus       284 ~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~  331 (552)
T PRK09274        284 GIKLPSLRRVISAGAPVPIAVIERFRAMLPP-DAEILTPYGATEALPIS  331 (552)
T ss_pred             CCCCchhhEEEecCCcCCHHHHHHHHHHcCC-CceEEccccccccceeE
Confidence            4578899999999999999999999999851 15899999999997644

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=98.56  E-value=1e-07  Score=60.38  Aligned_cols=42  Identities=21%  Similarity=0.311  Sum_probs=37.1

Q ss_pred             CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058         11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus        11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .+||.+++||+|+++++.+.+...++   ++++++||+||+++.+
T Consensus       420 ~~lr~i~~GGapl~~~~~~~~~~~~g---~~v~~~YG~TEt~~~~  461 (696)
T PLN02387        420 GRIRFMLSGGAPLSGDTQRFINICLG---APIGQGYGLTETCAGA  461 (696)
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHcC---CCeeEeechhhcccce
Confidence            57999999999999999888877788   8899999999997544

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=98.56  E-value=1.6e-07  Score=57.88  Aligned_cols=46  Identities=52%  Similarity=0.865  Sum_probs=40.8

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..++++||.+.++|+++++++.+++.+.++   ..+.+.||+||+++++
T Consensus       319 ~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g---~~i~~~YG~tE~~~~~  364 (570)
T PRK04319        319 KYDLSSLRHILSVGEPLNPEVVRWGMKVFG---LPIHDNWWMTETGGIM  364 (570)
T ss_pred             cCCcccceEEEEcccCCCHHHHHHHHHHhC---CCeEeceeecccCCEE
Confidence            456789999999999999999999998888   7899999999997654

>PRK13382 acyl-CoA synthetase; Provisional

Probab=98.55  E-value=1.8e-07  Score=57.37  Aligned_cols=46  Identities=22%  Similarity=0.276  Sum_probs=40.1

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      +++++||.+++||+++++++.+.+.+.++   ..+++.||+||++.+++
T Consensus       309 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~i~~~YG~TE~~~~~~  354 (537)
T PRK13382        309 YSGRSLRFAAASGSRMRPDVVIAFMDQFG---DVIYNNYNATEAGMIAT  354 (537)
T ss_pred             CCccceeEEEEcCCCCCHHHHHHHHHHcC---CcEEecccccccCccee
Confidence            45568999999999999999999999988   67999999999976543

>KOG1175|consensus

Probab=98.54  E-value=6.8e-08  Score=61.12  Aligned_cols=50  Identities=56%  Similarity=0.925  Sum_probs=43.6

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceeccc
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP   58 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~   58 (59)
                      .++.++||.+.+.|+|++++.++|+.+.++.  .++++.|||||+++.++++
T Consensus       355 ~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~--~pv~e~~~qtEtG~~~i~~  404 (626)
T KOG1175|consen  355 SYSLKSLRTCGSVGEPINPEAWEWWKRVTGL--DPIYETYGQTETGGICITP  404 (626)
T ss_pred             ccccceEEEEeecCccCCcchHHHHHHhcCc--cchhhceeeeccCceeeec
Confidence            4555789999999999999999999999983  3799999999999887764

>PLN03052 acetate--CoA ligase; Provisional

Probab=98.52  E-value=1.5e-07  Score=60.07  Aligned_cols=48  Identities=29%  Similarity=0.464  Sum_probs=40.8

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..+++++||.+.++|++++++.+.|+.+.++.  .++++.||+||+++++
T Consensus       466 ~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~--~~i~~~yG~TE~~~~~  513 (728)
T PLN03052        466 AGLDWSSIRCFGSTGEASSVDDYLWLMSRAGY--KPIIEYCGGTELGGGF  513 (728)
T ss_pred             ccCChhheeEEEecCCCCCHHHHHHHHHhcCC--CCeEeeccChhhCccc
Confidence            45688999999999999999999988887762  5789999999997654

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=98.51  E-value=1.5e-07  Score=59.56  Aligned_cols=43  Identities=30%  Similarity=0.499  Sum_probs=36.5

Q ss_pred             CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceecc
Q psy10058         11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLT   57 (59)
Q Consensus        11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~   57 (59)
                      ..+|++.+||+++++++...+ ..+|   +++.++|||||+.++++.
T Consensus       353 gri~~~~sGGa~l~~~~~~f~-~~lG---i~i~eGYGlTEts~~~~v  395 (613)
T COG1022         353 GRIRYALSGGAPLSPELLHFF-RSLG---IPILEGYGLTETSAVVSV  395 (613)
T ss_pred             CcEEEEEecCCcCCHHHHHHH-HHcC---CCeEEEecccccccceEE
Confidence            468999999999999998877 4557   899999999999876653

>KOG1256|consensus

Probab=98.51  E-value=1.6e-07  Score=59.85  Aligned_cols=42  Identities=24%  Similarity=0.566  Sum_probs=37.5

Q ss_pred             CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058         11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus        11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..+|.+++|++|+++++..-++..++   +.+.++|||||+.+.+
T Consensus       419 g~vr~~~sGaAPls~ev~~F~r~~~g---~~v~eGYGlTEts~g~  460 (691)
T KOG1256|consen  419 GNVRLIISGAAPLSPEVLTFFRAALG---CRVLEGYGLTETSAGT  460 (691)
T ss_pred             CceeEEEecCCCCCHHHHHHHHHhcC---ceeeecccccccCCce
Confidence            46889999999999999999988888   9999999999998433

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=98.51  E-value=2.9e-07  Score=56.43  Aligned_cols=46  Identities=26%  Similarity=0.344  Sum_probs=40.6

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..++++||.+.++|+++++++.+++.+.++   ..+++.||+||++.+.
T Consensus       308 ~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~  353 (547)
T PRK13295        308 GRPVSSLRTFLCAGAPIPGALVERARAALG---AKIVSAWGMTENGAVT  353 (547)
T ss_pred             CCCcccceEEEEecCCCCHHHHHHHHHHhC---CCeEEeccCCCCCCee
Confidence            356788999999999999999999999887   8899999999997554

>PLN02736 long-chain acyl-CoA synthetase

Probab=98.51  E-value=1.5e-07  Score=58.92  Aligned_cols=42  Identities=19%  Similarity=0.412  Sum_probs=37.7

Q ss_pred             CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058         11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus        11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ++||.+++||+++++++.+++.+.++   +.+++.||+||++.++
T Consensus       376 ~~lr~~~~gGa~l~~~~~~~~~~~~g---~~~~~~YG~TE~~~~~  417 (651)
T PLN02736        376 GRVRFMSSGASPLSPDVMEFLRICFG---GRVLEGYGMTETSCVI  417 (651)
T ss_pred             CcEEEEEeCCCCCCHHHHHHHHHHhC---CCeEEEechHHhchhe
Confidence            47999999999999999999988888   7899999999997544

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=98.51  E-value=2.9e-07  Score=57.43  Aligned_cols=49  Identities=73%  Similarity=1.429  Sum_probs=40.9

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..++++||.+.++|+++++++.+++.+.++...+++++.||+||++.++
T Consensus       363 ~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~  411 (637)
T PRK00174        363 KYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIM  411 (637)
T ss_pred             cCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCce
Confidence            3567899999999999999999999888762126799999999997654

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=98.50  E-value=2.7e-07  Score=56.73  Aligned_cols=47  Identities=23%  Similarity=0.350  Sum_probs=41.1

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..+++++|.+.+||+++++.+.+++.+.++   +.+.+.||+||++.+++
T Consensus       329 ~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~  375 (562)
T PRK12492        329 DLDFSALKLTNSGGTALVKATAERWEQLTG---CTIVEGYGLTETSPVAS  375 (562)
T ss_pred             cccccceeEEEeccccCCHHHHHHHHHHhC---CceeeccCccccCceee
Confidence            456789999999999999999999998887   88999999999976553

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.49  E-value=3.3e-07  Score=55.27  Aligned_cols=46  Identities=17%  Similarity=0.277  Sum_probs=40.5

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCcc-ceEeccccCcccceec
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKC-SIVDTFWQTETGGHVL   56 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~-~i~~~yG~TE~~~~~~   56 (59)
                      .+++++|.++++|+++++++.+++.+.++   . .+++.||+||+++++.
T Consensus       278 ~~~~~l~~v~~~g~~~~~~~~~~~~~~~~---~~~~~~~YG~tE~~~~~~  324 (513)
T PRK07656        278 EDLSSLRLAVTGAASMPVALLERFESELG---VDIVLTGYGLSEASGVTT  324 (513)
T ss_pred             CCccceeeEEecCCCCCHHHHHHHHHHcC---CCceEeEEccccCCCcee
Confidence            46788999999999999999999999988   6 8999999999976543

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=98.48  E-value=2.6e-07  Score=56.88  Aligned_cols=46  Identities=11%  Similarity=0.079  Sum_probs=39.7

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .++++||.+++||+++++++.+++.+.+++  ..+++.||+||+++.+
T Consensus       285 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~--~~~~~~YG~TE~~~~~  330 (563)
T PLN02860        285 KVFPSVRKILNGGGSLSSRLLPDAKKLFPN--AKLFSAYGMTEACSSL  330 (563)
T ss_pred             ccccceeEEEeCCCcCCHHHHHHHHHhcCC--CceecCCCccccCccc
Confidence            456789999999999999999999998853  7899999999987543

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=98.47  E-value=4.6e-07  Score=54.95  Aligned_cols=47  Identities=23%  Similarity=0.248  Sum_probs=41.1

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      .+++++||.++.||+++++++.+++.+.++   +.+++.||+||++.++.
T Consensus       267 ~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~  313 (509)
T PRK12406        267 KYDVSSLRHVIHAAAPCPADVKRAMIEWWG---PVIYEYYGSTESGAVTF  313 (509)
T ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHHHcC---CcEEeeccccccCceEe
Confidence            456789999999999999999999999887   78999999999986543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.47  E-value=3.2e-07  Score=59.87  Aligned_cols=48  Identities=23%  Similarity=0.275  Sum_probs=41.9

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      .+.+++++|.+.+||+++++++.+++++.++   ..+.+.||+||++++++
T Consensus       893 ~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g---~~~~~~YG~tE~~~~~~  940 (1146)
T PRK08633        893 HPLMFASLRLVVAGAEKLKPEVADAFEEKFG---IRILEGYGATETSPVAS  940 (1146)
T ss_pred             CcccCCCeeeEEEcCCcCCHHHHHHHHHHhC---CCeecccccccCcceEE
Confidence            3456789999999999999999999999988   78999999999976543

>PRK13383 acyl-CoA synthetase; Provisional

Probab=98.45  E-value=3.1e-07  Score=55.89  Aligned_cols=45  Identities=27%  Similarity=0.378  Sum_probs=39.7

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .+++++|.+++||+++++++.+++.+.++   ..+++.||+||++..+
T Consensus       289 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~g---~~v~~~YG~tE~~~~~  333 (516)
T PRK13383        289 NPLPQLRVVMSSGDRLDPTLGQRFMDTYG---DILYNGYGSTEVGIGA  333 (516)
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHcC---chhhhcccccccccce
Confidence            35678999999999999999999999988   7899999999997543

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.45  E-value=4e-07  Score=55.56  Aligned_cols=46  Identities=26%  Similarity=0.321  Sum_probs=40.4

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..+++++|.+++||+++++++.+++.+.++   ..+++.||+||++...
T Consensus       301 ~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~  346 (546)
T PRK08314        301 ERDLSSLRYIGGGGAAMPEAVAERLKELTG---LDYVEGYGLTETMAQT  346 (546)
T ss_pred             ccCchhhheeeeccccCCHHHHHHHHHHcC---CcEEecccccccccce
Confidence            456778999999999999999999999887   7899999999997543

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.44  E-value=3.8e-07  Score=56.12  Aligned_cols=46  Identities=24%  Similarity=0.321  Sum_probs=40.0

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      .++++||.+++||+++++++.+++.+.++   +.+++.||+||++.++.
T Consensus       323 ~~~~~lr~v~~gG~~~~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~~  368 (562)
T PRK05677        323 LDFSALKLTLSGGMALQLATAERWKEVTG---CAICEGYGMTETSPVVS  368 (562)
T ss_pred             CChhhceEEEEcCccCCHHHHHHHHHHcC---CCeeccCCccccCccee
Confidence            35678999999999999999999999887   88999999999875543

>PRK06060 acyl-CoA synthetase; Validated

Probab=98.43  E-value=3.3e-07  Score=57.83  Aligned_cols=46  Identities=28%  Similarity=0.366  Sum_probs=39.9

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .++++||.+++||+++++++.+++.+.+++  +.+++.||+||++.++
T Consensus       257 ~~~~slr~i~~gGe~l~~~~~~~~~~~~~~--~~~~~~YG~tE~~~~~  302 (705)
T PRK06060        257 DSFRSLRCVVSAGEALELGLAERLMEFFGG--IPILDGIGSTEVGQTF  302 (705)
T ss_pred             ccccceeEEEEecCcCCHHHHHHHHHHcCC--CceEeeeeccccCceE
Confidence            456789999999999999999999998863  7899999999997543

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.43  E-value=4e-07  Score=55.05  Aligned_cols=46  Identities=26%  Similarity=0.252  Sum_probs=40.6

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .++++++|.++++|+++++++.+++.+.++   ..+++.||+||++.++
T Consensus       258 ~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~---~~~~~~yG~tE~~~~~  303 (502)
T PRK08276        258 RYDVSSLRVAIHAAAPCPVEVKRAMIDWWG---PIIHEYYASSEGGGVT  303 (502)
T ss_pred             CCCcccceEEEecCCCCCHHHHHHHHHHhC---cHhhhhccccccccee
Confidence            456789999999999999999999999887   6789999999998643

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=98.43  E-value=6.1e-07  Score=54.86  Aligned_cols=45  Identities=24%  Similarity=0.270  Sum_probs=39.9

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .+++++|.++++|+++++++.+++.+.++   +.+++.||+||++.+.
T Consensus       307 ~~~~~l~~~~~gG~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~  351 (538)
T TIGR03208       307 APVPSLFTFLCAGAPIPGILVERAWELLG---ALIVSAWGMTENGAVT  351 (538)
T ss_pred             CCCCcceEEEEcCCCCCHHHHHHHHHHcC---CeEEeeeccCcCCCcc
Confidence            46788999999999999999999988887   7899999999987554

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=98.41  E-value=5.8e-07  Score=52.84  Aligned_cols=46  Identities=24%  Similarity=0.263  Sum_probs=40.7

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .++++||.+.++|+++++++.+.+.+.++.  +.+.+.||+||++.++
T Consensus       231 ~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~--~~i~~~YG~tE~g~~~  276 (408)
T TIGR01733       231 PALASLRLVILGGEALTPALVDRWRARGPG--ARLINLYGPTETTVWS  276 (408)
T ss_pred             hcccCceEEEEeCccCCHHHHHHHHHhCCC--cEEEecccCCceEEEE
Confidence            457889999999999999999999999873  7899999999998665

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=98.40  E-value=5.9e-07  Score=55.10  Aligned_cols=47  Identities=19%  Similarity=0.256  Sum_probs=40.8

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..++++||.+++||+++++++.+++++.++   +.+++.||+||++.+++
T Consensus       325 ~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~  371 (560)
T PRK08751        325 QIDFSSLKMTLGGGMAVQRSVAERWKQVTG---LTLVEAYGLTETSPAAC  371 (560)
T ss_pred             CcchhhheeeeeCCCCCCHHHHHHHHHHhC---CeEEEeeccccCCCcee
Confidence            356779999999999999999999998887   78999999999976543

>KOG1180|consensus

Probab=98.40  E-value=3e-07  Score=57.84  Aligned_cols=43  Identities=23%  Similarity=0.419  Sum_probs=37.2

Q ss_pred             CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058         11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus        11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..||++++||+|++++..+-+.-.+.   +++.++||+||+++..+
T Consensus       402 G~lR~~LsGGapLS~dtQrF~nic~C---~Pv~qGYGLTEtca~~t  444 (678)
T KOG1180|consen  402 GNLRYILSGGAPLSPDTQRFMNICFC---CPVLQGYGLTETCAAAT  444 (678)
T ss_pred             CceEEEEeCCCCCCHHHHHHHHHhcc---ccccccccccchhcccE
Confidence            46999999999999999888877787   79999999999975443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.40  E-value=6.9e-07  Score=58.66  Aligned_cols=47  Identities=26%  Similarity=0.301  Sum_probs=41.4

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..+++++|.+.+||+++++++.+++.+.++   ..+++.||+||++..++
T Consensus       903 ~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~  949 (1140)
T PRK06814        903 PYDFRSLRYVFAGAEKVKEETRQTWMEKFG---IRILEGYGVTETAPVIA  949 (1140)
T ss_pred             cccccceeEEEEcCCcCCHHHHHHHHHHhC---CcEEeccccccccceEE
Confidence            457789999999999999999999999887   78999999999976543

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.39  E-value=7e-07  Score=54.74  Aligned_cols=44  Identities=16%  Similarity=0.189  Sum_probs=39.8

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH   54 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~   54 (59)
                      .++++||.++++|+++++++.+++.+.++   ..+++.||+||++..
T Consensus       290 ~~~~~l~~~~~~G~~l~~~~~~~~~~~~~---~~l~~~YG~tE~~~~  333 (539)
T PRK07008        290 LRFSTLRRTVIGGSACPPAMIRTFEDEYG---VEVIHAWGMTEMSPL  333 (539)
T ss_pred             CCcccceEEEEcCCCCCHHHHHHHHHHhC---Cceeccccccccccc
Confidence            46788999999999999999999999988   889999999999754

>PRK13391 acyl-CoA synthetase; Provisional

Probab=98.39  E-value=8.5e-07  Score=53.89  Aligned_cols=46  Identities=28%  Similarity=0.242  Sum_probs=40.3

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..+++++|.+++||+++++++.+++.+.++   ..+++.||+||++.+.
T Consensus       271 ~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g---~~v~~~YG~tE~~~~~  316 (511)
T PRK13391        271 KYDLSSLEVAIHAAAPCPPQVKEQMIDWWG---PIIHEYYAATEGLGFT  316 (511)
T ss_pred             cCCccceeEEEEccCCCCHHHHHHHHHHcC---CceeeeeccccccceE
Confidence            346789999999999999999999998887   7899999999997653

>PRK12582 acyl-CoA synthetase; Provisional

Probab=98.37  E-value=4.9e-07  Score=56.45  Aligned_cols=47  Identities=15%  Similarity=0.217  Sum_probs=38.1

Q ss_pred             CCCccceeeecCCCCCHHHHHHHHHHh----CCCccceEeccccCcccceec
Q psy10058          9 DLNSLRVLGSVGEPINPEAWQWYYHSI----GGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         9 ~~~~lr~~~~~g~~~~~~~~~~~~~~~----~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ++++||.+++||+++++++.+++.+.+    +. ++++++.||+||++.++.
T Consensus       344 ~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~-~~~l~~~YG~TE~~~~~~  394 (624)
T PRK12582        344 FFKNLRLMAYGGATLSDDLYERMQALAVRTTGH-RIPFYTGYGATETAPTTT  394 (624)
T ss_pred             HhhheeEEEecCCCCCHHHHHHHHHHHHhhcCC-CceEEeccccccccceee
Confidence            467899999999999999999998753    31 156899999999976554

>PLN02574 4-coumarate--CoA ligase-like

Probab=98.37  E-value=8.4e-07  Score=54.65  Aligned_cols=47  Identities=15%  Similarity=0.180  Sum_probs=40.4

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..++++||.+.++|+++++++.+++.+.+++  +.+.+.||+||++.+.
T Consensus       315 ~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~--~~v~~~YG~tE~~~~~  361 (560)
T PLN02574        315 GEVLKSLKQVSCGAAPLSGKFIQDFVQTLPH--VDFIQGYGMTESTAVG  361 (560)
T ss_pred             cCccccceEEEEecccCCHHHHHHHHHHCCC--CcEEecccccccCcee
Confidence            4567899999999999999999999988853  7899999999987543

>PRK06145 acyl-CoA synthetase; Validated

Probab=98.37  E-value=9.2e-07  Score=53.39  Aligned_cols=46  Identities=22%  Similarity=0.177  Sum_probs=40.0

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH   54 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~   54 (59)
                      ..+++++|.+++||+++++++.+++.+.++.  ..+++.||+||++..
T Consensus       260 ~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~--~~v~~~YG~tE~~~~  305 (497)
T PRK06145        260 RFDLDSLAWCIGGGEKTPESRIRDFTRVFTR--ARYIDAYGLTETCSG  305 (497)
T ss_pred             ccccccceEEEecCCCCCHHHHHHHHHHcCC--CceEEeecCcccCCc
Confidence            4566789999999999999999999998863  789999999999764

>PLN03051 acyl-activating enzyme; Provisional

Probab=98.36  E-value=6.8e-07  Score=54.45  Aligned_cols=47  Identities=23%  Similarity=0.256  Sum_probs=36.9

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH   54 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~   54 (59)
                      ..++++||.+.+||++++++..+++++.++. .+.+++.||+||++..
T Consensus       232 ~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~-~~~~~~~YG~TE~~~~  278 (499)
T PLN03051        232 GLDWSKLRVFASTGEASAVDDVLWLSSVRGY-YKPVIEYCGGTELASG  278 (499)
T ss_pred             cCCchhheEEEecCCCCCHHHHHHHHHhccc-cceeEeeeccccccce
Confidence            4577899999999999999998887763321 1568999999998643

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.36  E-value=5.6e-07  Score=56.15  Aligned_cols=50  Identities=18%  Similarity=0.234  Sum_probs=39.7

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCC---CccceEeccccCcccceec
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGG---GKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~---~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..++++||.+++||+++++++.+++.+.++.   ....+++.||+||++.+++
T Consensus       302 ~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~  354 (631)
T PRK07769        302 PLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVS  354 (631)
T ss_pred             CcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEe
Confidence            3578899999999999999999999988731   0134889999999875443

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=98.35  E-value=8.9e-07  Score=54.24  Aligned_cols=44  Identities=14%  Similarity=0.157  Sum_probs=38.9

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .++++||.++++|+++++++.+++++ ++   .++++.||+||++.++
T Consensus       291 ~~~~~lr~~~~~G~~l~~~~~~~~~~-~~---~~~~~~YG~tE~~~~~  334 (542)
T PRK06018        291 LKLPHLKMVVCGGSAMPRSMIKAFED-MG---VEVRHAWGMTEMSPLG  334 (542)
T ss_pred             CCcccceEEEEcCCCCCHHHHHHHHH-hC---CCeEeeecccccCccc
Confidence            45678999999999999999999988 77   8899999999997553

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=98.35  E-value=8.5e-07  Score=54.26  Aligned_cols=47  Identities=30%  Similarity=0.385  Sum_probs=40.2

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..+++++|.+++||+++++++.+++.+.++   ..+++.||+||++..++
T Consensus       308 ~~~~~~l~~i~~gg~~~~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~  354 (541)
T TIGR03205       308 KRDLSSLATIGSGGAPLPVEVANFFERKTG---LKLKSGWGMTETCSPGT  354 (541)
T ss_pred             ccCccccceEEEccccCCHHHHHHHHHHhC---CCeecccccccCCcccc
Confidence            345678999999999999999999988887   78999999999975543

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=98.35  E-value=1.1e-06  Score=52.87  Aligned_cols=47  Identities=19%  Similarity=0.177  Sum_probs=40.4

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..+++++|.++++|+++++++.+++.+.++.  ..+++.||+||++..+
T Consensus       256 ~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~--~~~~~~yG~tE~~~~~  302 (503)
T PRK04813        256 EEHLPNLTHFLFCGEELPHKTAKKLLERFPS--ATIYNTYGPTEATVAV  302 (503)
T ss_pred             cccCCCceEEEEecCcCCHHHHHHHHHHCCC--ceEEeCcccchheeEE
Confidence            4567889999999999999999999999853  7899999999986543

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.34  E-value=7.6e-07  Score=54.81  Aligned_cols=47  Identities=19%  Similarity=0.151  Sum_probs=40.6

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..++++||.+++||+++++++.+++.+.++   ..+++.||+||++.++.
T Consensus       332 ~~~~~~lr~i~~gg~~l~~~~~~~~~~~~~---~~i~~~YG~TE~~~~~~  378 (573)
T PRK05605        332 GVDLSGVRNAFSGAMALPVSTVELWEKLTG---GLLVEGYGLTETSPIIV  378 (573)
T ss_pred             CCCchhccEEEECCCcCCHHHHHHHHHHhC---CCeecccccchhchhhh
Confidence            346788999999999999999999988887   78999999999975543

>PRK07470 acyl-CoA synthetase; Validated

Probab=98.34  E-value=6e-07  Score=54.67  Aligned_cols=46  Identities=24%  Similarity=0.309  Sum_probs=40.0

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..+++++|.+++||++++++..+++.+.++   ..+++.||+||+++.+
T Consensus       276 ~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g---~~~~~~YG~TE~~~~~  321 (528)
T PRK07470        276 RYDHSSLRYVIYAGAPMYRADQKRALAKLG---KVLVQYFGLGEVTGNI  321 (528)
T ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHHhC---cHHHHhCCCcccCCce
Confidence            356789999999999999999999988887   6789999999987544

>PRK05852 acyl-CoA synthetase; Validated

Probab=98.34  E-value=6.3e-07  Score=54.74  Aligned_cols=45  Identities=24%  Similarity=0.290  Sum_probs=39.7

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .+++++|.+.++|+++++++.+++.+.++   ..+++.||+||++..+
T Consensus       292 ~~~~~lr~i~~~G~~~~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~  336 (534)
T PRK05852        292 RKPAALRFIRSCSAPLTAETAQALQTEFA---APVVCAFGMTEATHQV  336 (534)
T ss_pred             ccCCCeeEEEECCCCCCHHHHHHHHHHhC---CChhhccCccccchhh
Confidence            35678999999999999999999999998   7899999999997544

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.33  E-value=9.7e-07  Score=53.20  Aligned_cols=47  Identities=26%  Similarity=0.300  Sum_probs=41.1

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..+++++|.+.++|+++++++.+++.+.++   +.+++.||+||+++++.
T Consensus       277 ~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~~  323 (521)
T PRK06187        277 FVDFSSLRLVIYGGAALPPALLREFKEKFG---IDLVQGYGMTETSPVVS  323 (521)
T ss_pred             ccCcchhhEEEEcCcCCCHHHHHHHHHHhC---cchheeeccCccCcccc
Confidence            456789999999999999999999999886   88999999999976543

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=98.33  E-value=8.5e-07  Score=55.31  Aligned_cols=48  Identities=17%  Similarity=0.279  Sum_probs=38.4

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHH----hCCCccceEeccccCcccceec
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHS----IGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~----~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      .++++||.+++||+++++++.+++.+.    ++. ++.+++.||+||++.+++
T Consensus       331 ~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~-~~~l~~~YG~TE~~~~~~  382 (614)
T PRK08180        331 RFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGE-RIRMMTGLGMTETAPSAT  382 (614)
T ss_pred             hhccceeEEEEccCCCCHHHHHHHHHHHHhhcCC-CceeeeeecccccCCceE
Confidence            456899999999999999999998874    331 156899999999976543

>PRK12583 acyl-CoA synthetase; Provisional

Probab=98.32  E-value=1.2e-06  Score=53.59  Aligned_cols=48  Identities=25%  Similarity=0.194  Sum_probs=40.9

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..++++||.+++||+++++++.+++.+.++.  ..+.+.||+||++.+++
T Consensus       313 ~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~--~~i~~~YG~tE~~~~~~  360 (558)
T PRK12583        313 NFDLSSLRTGIMAGAPCPIEVMRRVMDEMHM--AEVQIAYGMTETSPVSL  360 (558)
T ss_pred             CCCchhheEEEecCCCCCHHHHHHHHHHcCC--cceecccccccccccee
Confidence            3467899999999999999999999998873  56899999999986543

>PRK07787 acyl-CoA synthetase; Validated

Probab=98.31  E-value=1.2e-06  Score=52.80  Aligned_cols=44  Identities=20%  Similarity=0.119  Sum_probs=38.9

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH   54 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~   54 (59)
                      .++.++|.+++||+++++++.+++.+.++   ..+++.||+||++..
T Consensus       238 ~~l~~l~~~~~gg~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~  281 (471)
T PRK07787        238 RALRGARLLVSGSAALPVPVFDRLAALTG---HRPVERYGMTETLIT  281 (471)
T ss_pred             ccccceeEEEECCCCCCHHHHHHHHHHcC---CCeecccCccccCcc
Confidence            45678999999999999999999998887   789999999999754

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=98.30  E-value=1.8e-06  Score=52.69  Aligned_cols=43  Identities=26%  Similarity=0.325  Sum_probs=38.6

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccc
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETG   52 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~   52 (59)
                      ..+++++|.+++||+++++++.+++.+.++   ..+.+.||+||+.
T Consensus       295 ~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g---~~~~~~YG~tE~~  337 (527)
T TIGR02275       295 RYDLSSLKLLQVGGAKFSEAAARRVPAVFG---CQLQQVFGMAEGL  337 (527)
T ss_pred             CCCccceEEEEEcCCCCCHHHHHHHHHHhC---CeEEeeeccCccC
Confidence            356778999999999999999999999888   7899999999965

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK08316 acyl-CoA synthetase; Validated

Probab=98.30  E-value=1.7e-06  Score=52.30  Aligned_cols=47  Identities=21%  Similarity=0.119  Sum_probs=40.7

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..+++++|.+.+||+++++++.+.+.+.+++  ..+++.||+||++.+.
T Consensus       282 ~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~--~~~~~~YG~tE~~~~~  328 (523)
T PRK08316        282 TRDLSSLRKGYYGASIMPVEVLKELRERLPG--LRFYNCYGQTEIAPLA  328 (523)
T ss_pred             cCCcccceEEEEcCCcCCHHHHHHHHHHcCC--CceeeeecccccCccc
Confidence            4567889999999999999999999998853  7899999999987654

>PRK07514 malonyl-CoA synthase; Validated

Probab=98.29  E-value=1.7e-06  Score=52.22  Aligned_cols=46  Identities=20%  Similarity=0.291  Sum_probs=40.0

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..+++++|.++.||+++++++.+++.+.++   ..+++.||+||++...
T Consensus       265 ~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~  310 (504)
T PRK07514        265 REAAAHMRLFISGSAPLLAETHREFQERTG---HAILERYGMTETNMNT  310 (504)
T ss_pred             cccccceeeEEecCCCCCHHHHHHHHHHhC---Ccceeecccccccccc
Confidence            446678999999999999999999999887   7899999999987543

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=98.29  E-value=1.4e-06  Score=54.59  Aligned_cols=47  Identities=30%  Similarity=0.618  Sum_probs=40.1

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH   54 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~   54 (59)
                      ..++++||.+.++|+++++++++++.+.++. +..+.+.||+||+++.
T Consensus       379 ~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~-~~~~~~~yG~TE~~~~  425 (655)
T PRK03584        379 THDLSALRTIGSTGSPLPPEGFDWVYEHVKA-DVWLASISGGTDICSC  425 (655)
T ss_pred             cCChhheEEEEEecCCCCHHHHHHHHHHhCC-CceEEeccChHhhhcc
Confidence            4678899999999999999999999998842 2678999999998643

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.29  E-value=1e-06  Score=54.10  Aligned_cols=46  Identities=22%  Similarity=0.250  Sum_probs=39.8

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..++++||.+++||+++++++.+++.+.++   ..+++.||+||++.+.
T Consensus       319 ~~~~~~lr~v~~gg~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~  364 (563)
T PRK06710        319 EYDISSIRACISGSAPLPVEVQEKFETVTG---GKLVEGYGLTESSPVT  364 (563)
T ss_pred             cCChhhhhheeeCCCcCCHHHHHHHHHhhC---CCEecccccccCcccc
Confidence            345678999999999999999999988887   7899999999997643

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=98.29  E-value=2e-06  Score=51.96  Aligned_cols=47  Identities=17%  Similarity=0.140  Sum_probs=40.0

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..++++++.++++|++++++..+++.+.++.  +.+++.||+||++..+
T Consensus       254 ~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~--~~~~~~yG~tE~~~~~  300 (502)
T TIGR01734       254 QENYPHLTHFLFCGEELPVKTAKALLERFPK--ATIYNTYGPTEATVAV  300 (502)
T ss_pred             cccCCcccEEEEcCCcCCHHHHHHHHHHCCC--cEEEeCccCCcceEEE
Confidence            4467789999999999999999999998853  7899999999987533

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.28  E-value=2.1e-06  Score=52.79  Aligned_cols=46  Identities=17%  Similarity=0.190  Sum_probs=39.9

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      .++++||.+++||+++++.+.+++++.++   ..+.+.||+||++..++
T Consensus       322 ~~~~~lr~~~~gg~~~~~~~~~~~~~~~g---~~~~~~YG~tE~~~~~~  367 (560)
T PRK08974        322 LDFSSLKLSVGGGMAVQQAVAERWVKLTG---QYLLEGYGLTECSPLVS  367 (560)
T ss_pred             CCccceeEEEecCccCCHHHHHHHHHHhC---CcEEeeecccccCceee
Confidence            45678999999999999999999998887   78999999999875543

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=98.28  E-value=1.7e-06  Score=50.58  Aligned_cols=44  Identities=23%  Similarity=0.231  Sum_probs=37.4

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .+++++|.+++||+++++++.+++.+ ++   +.+++.||+||++..+
T Consensus       148 ~~~~~l~~i~~gG~~l~~~~~~~~~~-~~---~~v~~~YG~TE~~~~~  191 (358)
T PRK07824        148 AALAELDAVLVGGGPAPAPVLDAAAA-AG---INVVRTYGMSETSGGC  191 (358)
T ss_pred             CCcccceEEEECCCCCCHHHHHHHHh-cC---CcEEecccCCccCCCc
Confidence            46788999999999999999998865 46   7899999999987543

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=98.28  E-value=1e-06  Score=55.71  Aligned_cols=42  Identities=29%  Similarity=0.331  Sum_probs=33.6

Q ss_pred             CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058         11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus        11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .+||.+++||+|+++++.+.+ +.++.  +.+++.||+||+++++
T Consensus       383 ~~lr~~~~gga~l~~~~~~~~-~~~~~--~~i~~~YG~TE~~~~~  424 (660)
T PLN02430        383 GRLRLLISGGAPLSTEIEEFL-RVTSC--AFVVQGYGLTETLGPT  424 (660)
T ss_pred             CeEEEEEECCCCCCHHHHHHH-HHhcC--CCeeeecchhhhhhce
Confidence            579999999999999986655 45542  5799999999987644

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=98.28  E-value=2e-06  Score=52.67  Aligned_cols=45  Identities=22%  Similarity=0.296  Sum_probs=37.8

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..++++||.+++||+++++++.+.+.+. +   +.+++.||+||++++.
T Consensus       298 ~~~~~~lr~i~~gG~~~~~~~~~~~~~~-~---~~l~~~YG~TE~~~~~  342 (547)
T PRK06087        298 PADLSALRFFLCGGTTIPKKVARECQQR-G---IKLLSVYGSTESSPHA  342 (547)
T ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHc-C---CcEEEEecccccCCcc
Confidence            3466789999999999999998887654 6   7899999999987554

>PLN02246 4-coumarate--CoA ligase

Probab=98.28  E-value=1.7e-06  Score=52.89  Aligned_cols=47  Identities=23%  Similarity=0.278  Sum_probs=40.1

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..+++++|.+++||+++++++.+++.+.+++  ..+.+.||+||++.++
T Consensus       294 ~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~--~~~~~~YG~tE~~~~~  340 (537)
T PLN02246        294 KYDLSSIRMVLSGAAPLGKELEDAFRAKLPN--AVLGQGYGMTEAGPVL  340 (537)
T ss_pred             ccCccceeEEEEecCcCCHHHHHHHHHHcCC--CeEeccccccccCccc
Confidence            3456789999999999999999999998853  6788999999997653

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=98.27  E-value=1e-06  Score=53.93  Aligned_cols=50  Identities=22%  Similarity=0.322  Sum_probs=38.2

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHH---hCCCccceEeccccCcccceec
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHS---IGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~---~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..++++||.+++||+++++++.+++.+.   +|.....+++.||+||++.+++
T Consensus       268 ~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~  320 (525)
T PRK05851        268 DVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVT  320 (525)
T ss_pred             CCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEE
Confidence            3467889999999999999999998875   3310024889999999975443

>PRK06839 acyl-CoA synthetase; Validated

Probab=98.26  E-value=2.4e-06  Score=51.49  Aligned_cols=45  Identities=27%  Similarity=0.276  Sum_probs=38.7

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..+++++|.+++||+++++++.+++.+. +   +++.+.||+||++.++
T Consensus       260 ~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g---~~~~~~YG~tE~~~~~  304 (496)
T PRK06839        260 TTNLQSVRWFYNGGAPCPEELMREFIDR-G---FLFGQGFGMTETSPTV  304 (496)
T ss_pred             cCCCcccceEEECCCCCCHHHHHHHHHh-C---CeeEeeccCCCCCcce
Confidence            3467889999999999999999998776 6   7899999999998543

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=98.26  E-value=1.9e-06  Score=52.91  Aligned_cols=47  Identities=21%  Similarity=0.310  Sum_probs=40.4

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..+++++|.+..||+++++.+.+++.+.++   +++.+.||+||++.+++
T Consensus       323 ~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~  369 (557)
T PRK07059        323 KLDFSKLIVANGGGMAVQRPVAERWLEMTG---CPITEGYGLSETSPVAT  369 (557)
T ss_pred             cCCchhheEEEeccccCCHHHHHHHHHHhC---CCeeeccccccccchhh
Confidence            345678999999999999999999998887   88999999999976543

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=98.25  E-value=1.7e-06  Score=52.49  Aligned_cols=44  Identities=32%  Similarity=0.302  Sum_probs=39.0

Q ss_pred             CCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         9 ~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      +..++|.+.++|+++++++.+.|.+.++   +.+++.||+||++.++
T Consensus       276 ~~~~l~~~~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~  319 (508)
T TIGR02262       276 DQVRLRLCTSAGEALPAEVGQRWQARFG---VDIVDGIGSTEMLHIF  319 (508)
T ss_pred             ccccceeEEEcCCCCCHHHHHHHHHHhC---CchhhCccccccCcee
Confidence            4568999999999999999999999887   7899999999998654

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK13390 acyl-CoA synthetase; Provisional

Probab=98.24  E-value=2.5e-06  Score=51.72  Aligned_cols=46  Identities=20%  Similarity=0.244  Sum_probs=39.8

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..+++++|.++.+|+++++++.+.+.+.++   ..+++.||+||+++++
T Consensus       266 ~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~  311 (501)
T PRK13390        266 RYDVSSLRAVIHAAAPCPVDVKHAMIDWLG---PIVYEYYSSTEAHGMT  311 (501)
T ss_pred             cCChhhhheEEEcCCCCCHHHHHHHHHhcC---CceeeeecccccCceE
Confidence            346778999999999999999999988887   7899999999997543

>PRK06188 acyl-CoA synthetase; Validated

Probab=98.22  E-value=2.3e-06  Score=52.08  Aligned_cols=45  Identities=22%  Similarity=0.206  Sum_probs=38.8

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .+++++|.+.+||++++++....+.+.++   ..+++.||+||++..+
T Consensus       278 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~  322 (524)
T PRK06188        278 RDLSSLETVYYGASPMSPVRLAEAIERFG---PIFAQYYGQTEAPMVI  322 (524)
T ss_pred             CCCcceeEEEEcCCCCCHHHHHHHHHHhC---chhhheeCccccCCce
Confidence            46789999999999999998888888887   6789999999996444

>PRK07798 acyl-CoA synthetase; Validated

Probab=98.22  E-value=3.5e-06  Score=51.04  Aligned_cols=47  Identities=23%  Similarity=0.216  Sum_probs=39.8

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..+++++|.+.+||+++++++.+++.+.+++  ..+++.||+||++.+.
T Consensus       292 ~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~--~~~~~~YG~tE~~~~~  338 (533)
T PRK07798        292 PYDLSSLFAIASGGALFSPSVKEALLELLPN--VVLTDSIGSSETGFGG  338 (533)
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHHcCC--CeEEeeeccccccccc
Confidence            3467789999999999999999999988843  7899999999986443

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=98.20  E-value=2.4e-06  Score=53.79  Aligned_cols=48  Identities=25%  Similarity=0.551  Sum_probs=39.4

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH   54 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~   54 (59)
                      ..+++++||.+.++|+++++++++++.+.++. +..+.+.||+||++++
T Consensus       379 ~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~-~~~~~~~yG~TE~~~~  426 (652)
T TIGR01217       379 RTHDLSALQCVASTGSPLPPDGFRWVYDEIKA-DVWLASISGGTDICSC  426 (652)
T ss_pred             ccCChhheeEEEeecCCCCHHHHHHHHHHhCC-CceEEeccCHHHHhcc
Confidence            34678999999999999999999999988862 1456789999997533

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=98.20  E-value=2.2e-06  Score=56.83  Aligned_cols=44  Identities=20%  Similarity=0.251  Sum_probs=38.4

Q ss_pred             CCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         9 ~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .+.+||.+++||+++++++.+++.+.++   +.+++.||+||++..+
T Consensus       715 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~---~~l~n~YG~TE~~~~~  758 (1296)
T PRK10252        715 SCASLRQVFCSGEALPADLCREWQQLTG---APLHNLYGPTEAAVDV  758 (1296)
T ss_pred             cCCCccEEEEecCCCCHHHHHHHHhcCC---CEEEeCCCcchhhhee
Confidence            4578999999999999999999988776   7899999999987543

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=98.19  E-value=4.2e-06  Score=50.62  Aligned_cols=45  Identities=16%  Similarity=0.080  Sum_probs=39.0

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH   54 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~   54 (59)
                      .+++++|.+.++|+++++++.+.+++.++.  ..+++.||+||++.+
T Consensus       271 ~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~--~~~~~~YG~tE~~~~  315 (515)
T TIGR03098       271 SAAPSLRYLTNSGGAMPRATLSRLRSFLPN--ARLFLMYGLTEAFRS  315 (515)
T ss_pred             CCccceEEEEecCCcCCHHHHHHHHHHCCC--CeEeeeeccccccce
Confidence            466789999999999999999999998852  779999999998644

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK08315 AMP-binding domain protein; Validated

Probab=98.19  E-value=3.7e-06  Score=51.49  Aligned_cols=48  Identities=23%  Similarity=0.176  Sum_probs=40.3

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..++++||.++.+|+++++++.+.+.+.++.  ..+.+.||+||++.+++
T Consensus       311 ~~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~--~~l~~~YG~tE~~~~~~  358 (559)
T PRK08315        311 RFDLSSLRTGIMAGSPCPIEVMKRVIDKMHM--SEVTIAYGMTETSPVST  358 (559)
T ss_pred             CCCchhhheeEecCCCCCHHHHHHHHHHcCC--cceeEEEccccccccee
Confidence            3467899999999999999999999988872  45899999999976543

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=98.19  E-value=2.3e-06  Score=54.04  Aligned_cols=42  Identities=17%  Similarity=0.220  Sum_probs=33.4

Q ss_pred             CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058         11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus        11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .+||.+++||+|+++++.+ +.+.++.  ..+++.||+||+++.+
T Consensus       383 ~~lr~~~~Ggapl~~~~~~-~~~~~~~--~~l~~~YG~TE~~~~~  424 (660)
T PLN02861        383 GRVRLLLSGAAPLPRHVEE-FLRVTSC--SVLSQGYGLTESCGGC  424 (660)
T ss_pred             CcEEEEEECCCCCCHHHHH-HHHHHcC--CCeeEecchhhhhhce
Confidence            4789999999999999754 6666662  4689999999987544

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=98.18  E-value=5e-06  Score=51.02  Aligned_cols=42  Identities=21%  Similarity=0.293  Sum_probs=37.9

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccc
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETG   52 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~   52 (59)
                      .++.+||.+.+||+++++++.+++.+.++   +.+.+.||+||+.
T Consensus       297 ~~~~~l~~v~~gg~~l~~~~~~~~~~~~g---~~~~~~YG~tE~~  338 (536)
T PRK10946        297 AQLASLKLLQVGGARLSETLARRIPAELG---CQLQQVFGMAEGL  338 (536)
T ss_pred             ccccceeEEEECCCCCCHHHHHHHHHhcC---CeEEEeecccccc
Confidence            45678999999999999999999988888   8899999999975

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=98.17  E-value=1.8e-06  Score=54.75  Aligned_cols=41  Identities=20%  Similarity=0.230  Sum_probs=34.1

Q ss_pred             CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058         11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus        11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ++||.+++||+++++++.++++..++    .++++||+||++.+.
T Consensus       428 ~~lr~i~~GGa~l~~~~~~~~~~~~~----~l~~~YG~TEt~~~~  468 (700)
T PTZ00216        428 GRVRAMLSGGGPLSAATQEFVNVVFG----MVIQGWGLTETVCCG  468 (700)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHhh----hHhhccCcccccccc
Confidence            57999999999999999887766553    688999999997543

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.17  E-value=4.8e-06  Score=51.46  Aligned_cols=44  Identities=20%  Similarity=0.178  Sum_probs=38.4

Q ss_pred             CCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         9 ~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      +..+||.++.+|+++++++.+++.+.++   +++++.||+||++.++
T Consensus       296 ~~~~l~~~~~gG~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~  339 (576)
T PRK05620        296 ERMSLQEIYVGGSAVPPILIKAWEERYG---VDVVHVWGMTETSPVG  339 (576)
T ss_pred             ccCceeEEEEcCCCCCHHHHHHHHHHhC---Cceeeeccccccccce
Confidence            3457999999999999999999988887   7899999999997543

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=98.17  E-value=3.6e-06  Score=51.24  Aligned_cols=40  Identities=28%  Similarity=0.365  Sum_probs=36.3

Q ss_pred             CCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccc
Q psy10058         10 LNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETG   52 (59)
Q Consensus        10 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~   52 (59)
                      ..+||.++++|++++++..+++++.+|   +.+++.||+||++
T Consensus       203 ~~~lr~ii~gGE~l~~~~r~~ie~~~g---~~v~~~YG~TE~~  242 (445)
T TIGR03335       203 ESSIRRLVVGGESFADESRNYVEELWG---CEVYNTYGSTEGT  242 (445)
T ss_pred             cCcceEEEEcCCCCCHHHHHHHHHHhC---CcEEecCChhhhh
Confidence            358999999999999999999988888   8999999999985

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=98.16  E-value=3.5e-06  Score=50.60  Aligned_cols=39  Identities=21%  Similarity=0.076  Sum_probs=35.9

Q ss_pred             CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccc
Q psy10058         11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETG   52 (59)
Q Consensus        11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~   52 (59)
                      .+||.++++|++++++..+++++.++   +.+.+.||+||++
T Consensus       195 ~~lr~i~~~ge~l~~~~~~~i~~~~g---~~v~~~YG~tE~~  233 (422)
T TIGR02155       195 TSLQVGIFGAEPWTNAMRKEIEARLG---MKATDIYGLSEVI  233 (422)
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhC---CceEecccchhhc
Confidence            57999999999999999999999998   8899999999984

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>PRK12467 peptide synthase; Provisional

Probab=98.15  E-value=3.1e-06  Score=61.27  Aligned_cols=48  Identities=21%  Similarity=0.199  Sum_probs=41.0

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..++++||.+++||+++++++.+++.+.+++  +.+++.||+||++..++
T Consensus      3347 ~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~--~~l~n~YG~TE~~~~~~ 3394 (3956)
T PRK12467       3347 GADCASLDIYVFGGEAVPPAAFEQVKRKLKP--RGLTNGYGPTEAVVTVT 3394 (3956)
T ss_pred             ccCCCCceEEEEecCCCCHHHHHHHHHhCCC--CEEEeCcccchhEeeeE
Confidence            4567889999999999999999999888753  77999999999976543

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=98.14  E-value=2.8e-06  Score=51.55  Aligned_cols=44  Identities=20%  Similarity=0.231  Sum_probs=36.6

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .++++||.+++||+++++++.+.+.+ ++   ..+.+.||+||++..+
T Consensus       227 ~~l~~l~~i~~gG~~l~~~~~~~~~~-~~---~~l~~~YG~TE~~~~~  270 (452)
T PRK07445        227 QWLAQFRTILLGGAPAWPSLLEQARQ-LQ---LRLAPTYGMTETASQI  270 (452)
T ss_pred             hhhhcceEEEECCccCCHHHHHHHHh-cC---CeEecCcchhhhcccc
Confidence            34678999999999999999888764 46   7899999999987543

>PLN02614 long-chain acyl-CoA synthetase

Probab=98.14  E-value=2.9e-06  Score=53.69  Aligned_cols=42  Identities=14%  Similarity=0.355  Sum_probs=33.6

Q ss_pred             CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058         11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus        11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ++||.+++||+|+++++ .++.+.++.  +.+++.||+||++++.
T Consensus       386 ~~lr~~~~Gga~l~~~~-~~~~~~~~~--~~i~~~YG~TE~~~~~  427 (666)
T PLN02614        386 GNVRIILSGAAPLASHV-ESFLRVVAC--CHVLQGYGLTESCAGT  427 (666)
T ss_pred             CcEEEEEEcCCCCCHHH-HHHHHHhcC--CCEEeeCchHhhhhhe
Confidence            57999999999999875 556666642  7899999999987543

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=98.12  E-value=3.5e-06  Score=50.69  Aligned_cols=44  Identities=25%  Similarity=0.389  Sum_probs=34.3

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .++++++. +++|+++++++++++++. +.  ..+++.||+||+++++
T Consensus       203 ~~l~slr~-i~gGa~l~~~l~~~~~~~-g~--~~v~~~YG~TEt~~i~  246 (386)
T TIGR02372       203 YRLPGVVG-VSSGAPSTAATWRCLLAA-GL--ARLLEVYGATETGGIG  246 (386)
T ss_pred             cCCCccee-EecCCCCCHHHHHHHHHh-cc--cchhheeccccccccc
Confidence            45677775 677899999999999775 51  3588999999997654

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=98.12  E-value=3.1e-06  Score=52.76  Aligned_cols=48  Identities=19%  Similarity=0.191  Sum_probs=37.4

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHh---CCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSI---GGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~---~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..++++|| +.+||+++++++.+++.+.+   |.....+.+.||+||++..+
T Consensus       314 ~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~  364 (612)
T PRK12476        314 DIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFV  364 (612)
T ss_pred             CcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheee
Confidence            34678899 99999999999999999887   31012378999999987543

>PRK09088 acyl-CoA synthetase; Validated

Probab=98.10  E-value=7e-06  Score=49.59  Aligned_cols=43  Identities=28%  Similarity=0.338  Sum_probs=36.0

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH   54 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~   54 (59)
                      .++++||.+++||++++.+..+.+.+. +   +++++.||+||++.+
T Consensus       249 ~~~~~l~~~~~gG~~~~~~~~~~~~~~-g---~~v~~~YG~TE~~~~  291 (488)
T PRK09088        249 AALRHLTALFTGGAPHAAEDILGWLDD-G---IPMVDGFGMSEAGTV  291 (488)
T ss_pred             cccccceEEEecCCCCCHHHHHHHHHh-C---Cceeeeecccccccc
Confidence            456789999999999998888777654 6   789999999999754

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=98.10  E-value=5.7e-06  Score=50.79  Aligned_cols=41  Identities=17%  Similarity=0.304  Sum_probs=35.9

Q ss_pred             ccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058         12 SLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH   54 (59)
Q Consensus        12 ~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~   54 (59)
                      ++|.+.++|+++++++.+++.+.+++  ..+++.||+||++.+
T Consensus       304 ~l~~i~~~g~~l~~~~~~~~~~~~~~--~~~~~~YG~tE~~~~  344 (546)
T PLN02330        304 KLQAIMTAAAPLAPELLTAFEAKFPG--VQVQEAYGLTEHSCI  344 (546)
T ss_pred             eeeeEEEcCCcCCHHHHHHHHHHcCC--CeEEecccccccccc
Confidence            47889999999999999999999842  889999999998644

>KOG1177|consensus

Probab=98.09  E-value=4.1e-06  Score=52.26  Aligned_cols=50  Identities=28%  Similarity=0.289  Sum_probs=42.6

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceecc
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLT   57 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~   57 (59)
                      .+++++++|..+.||+|.++++.+.+...+.-  ..+...||+||++++.+.
T Consensus       345 ~~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m--~~i~v~YG~TEts~v~~~  394 (596)
T KOG1177|consen  345 QQVDLSSLRKGVIGGAPVSPELLKLIVNQMNM--KDIAVAYGLTETSPVLFM  394 (596)
T ss_pred             ccCchhhhhhheeCCCCCCHHHHHHHHHhhCc--eeeEEEeeccccCcceee
Confidence            46789999999999999999999999887752  347789999999977654

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=97.98  E-value=1.4e-05  Score=53.61  Aligned_cols=46  Identities=22%  Similarity=0.142  Sum_probs=38.7

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .++++||.++.||+++++...+++.+..++  +.+++.||+||++..+
T Consensus       526 ~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~--~~l~n~YG~TE~~~~~  571 (1389)
T TIGR03443       526 TPIPSLHHAFFVGDILTKRDCLRLQTLAEN--VCIVNMYGTTETQRAV  571 (1389)
T ss_pred             ccCCCccEEEEecccCCHHHHHHHHHhCCC--CEEEECccCCccceeE
Confidence            457789999999999999999988877653  7899999999997543

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=97.98  E-value=1.6e-05  Score=47.23  Aligned_cols=42  Identities=24%  Similarity=0.154  Sum_probs=35.6

Q ss_pred             CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058         11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus        11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      .++|.+.++|+++++++.+++.+ .+   ..+++.||+||++..++
T Consensus       219 ~~l~~~~~~G~~~~~~~~~~~~~-~~---~~~~~~YG~tE~~~~~~  260 (436)
T TIGR01923       219 ENLRKILLGGSAIPAPLIEEAQQ-YG---LPIYLSYGMTETCSQVT  260 (436)
T ss_pred             CceEEEEECCCCCCHHHHHHHHH-hC---CceeeEecCCccchhcc
Confidence            57999999999999999988765 46   78999999999976543

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK12316 peptide synthase; Provisional

Probab=97.96  E-value=1.1e-05  Score=59.59  Aligned_cols=44  Identities=18%  Similarity=0.236  Sum_probs=38.6

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccc
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGG   53 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~   53 (59)
                      .++++||.+++||+++++++.+++.+.+++  +.+++.||+||++.
T Consensus       767 ~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~--~~l~n~YG~TE~~~  810 (5163)
T PRK12316        767 ASCTSLRRIVCSGEALPADAQEQVFAKLPQ--AGLYNLYGPTEAAI  810 (5163)
T ss_pred             ccCCCccEEEEeeccCCHHHHHHHHHhCCC--CeEEeCcCcChhee
Confidence            467789999999999999999999887753  78999999999974

>PRK05850 acyl-CoA synthetase; Validated

Probab=97.96  E-value=8.2e-06  Score=50.35  Aligned_cols=47  Identities=15%  Similarity=0.145  Sum_probs=37.4

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCC---CccceEeccccCcccce
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGG---GKCSIVDTFWQTETGGH   54 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~---~~~~i~~~yG~TE~~~~   54 (59)
                      .+++++|.+.+||+++++++.+++.+.++.   ....+.+.||+||++..
T Consensus       285 ~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~  334 (578)
T PRK05850        285 LDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVY  334 (578)
T ss_pred             cchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhh
Confidence            467789999999999999999999887631   01257899999998643

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=97.96  E-value=1.7e-05  Score=48.73  Aligned_cols=42  Identities=24%  Similarity=0.216  Sum_probs=36.9

Q ss_pred             ccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058         12 SLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus        12 ~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      +||.+.+||+++++++.+++.+.+++  ..+++.||+||++.+.
T Consensus       291 ~lr~i~~gg~~~~~~~~~~~~~~~~~--~~l~~~YG~tE~~~~~  332 (542)
T PRK07786        291 ALRVLSWGAAPASDTLLRQMAATFPE--AQILAAFGQTEMSPVT  332 (542)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHcCC--CeEEeeecccccccce
Confidence            68999999999999999999998853  7899999999997543

>PRK12467 peptide synthase; Provisional

Probab=97.96  E-value=1.7e-05  Score=57.75  Aligned_cols=46  Identities=24%  Similarity=0.246  Sum_probs=39.6

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .++++||.+++||+++++++.++|.+.++.  ..+++.||.||++..+
T Consensus      1831 ~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~--~~l~n~YG~TE~t~~~ 1876 (3956)
T PRK12467       1831 EHPLSLRRVVCGGEALEVEALRPWLERLPD--TGLFNLYGPTETAVDV 1876 (3956)
T ss_pred             ccCCCceEEEEccccCCHHHHHHHHHhCCC--CeEEeCccCCcCEEeE
Confidence            456789999999999999999999888763  6799999999997544

>PRK05857 acyl-CoA synthetase; Validated

Probab=97.91  E-value=2.2e-05  Score=48.27  Aligned_cols=44  Identities=20%  Similarity=0.305  Sum_probs=35.5

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH   54 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~   54 (59)
                      ..+++++|.+.+||++++....++ .+.++   ..+.+.||+||++..
T Consensus       282 ~~~~~~lr~~~~gG~~~~~~~~~~-~~~~g---~~i~~~YG~TE~~~~  325 (540)
T PRK05857        282 NATVPSLRLVGYGGSRAIAADVRF-IEATG---VRTAQVYGLSETGCT  325 (540)
T ss_pred             CCcCccceEEEEcCccCCchhHHH-HHHhC---CeeecccCCCcCCce
Confidence            356789999999999988777654 45667   789999999998743

>PRK12316 peptide synthase; Provisional

Probab=97.90  E-value=2.1e-05  Score=58.14  Aligned_cols=46  Identities=24%  Similarity=0.307  Sum_probs=39.3

Q ss_pred             CCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         9 ~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ++++||.+++||+++++++.+++.+.+.+  +.+++.||+||++..++
T Consensus      4807 ~~~~lr~v~~gGe~l~~~~~~~~~~~~~~--~~l~n~YG~TE~~~~~~ 4852 (5163)
T PRK12316       4807 EPPSLRVYCFGGEAVAQASYDLAWRALKP--VYLFNGYGPTETTVTVL 4852 (5163)
T ss_pred             CCCCccEEEEecccCCHHHHHHHHHhCCC--CEEEecccCccceEEEE
Confidence            67899999999999999999888777653  78999999999986543

>PRK05691 peptide synthase; Validated

Probab=97.90  E-value=1.5e-05  Score=58.27  Aligned_cols=46  Identities=26%  Similarity=0.221  Sum_probs=40.0

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .++++||.+++||+++++++.+++.+.+++  +.+++.||.||++..+
T Consensus      1385 ~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~--~~l~n~YG~TE~~~~~ 1430 (4334)
T PRK05691       1385 AACTSLRRLFSGGEALPAELRNRVLQRLPQ--VQLHNRYGPTETAINV 1430 (4334)
T ss_pred             ccCCcccEEEEeecCCCHHHHHHHHHhCCC--cEEEeCCCcChheeee
Confidence            467889999999999999999999988853  7899999999997544

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=97.87  E-value=2.7e-05  Score=46.86  Aligned_cols=43  Identities=21%  Similarity=0.010  Sum_probs=35.8

Q ss_pred             CCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058         10 LNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus        10 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..+||.+++||+++++.+.+++.+ ++   ..+.+.||+||++...+
T Consensus       239 ~~~l~~i~~gG~~~~~~~~~~~~~-~g---~~~~~~YG~tE~~~~~~  281 (458)
T PRK09029        239 PLSLKAVLLGGAAIPVELTEQAEQ-QG---IRCWCGYGLTEMASTVC  281 (458)
T ss_pred             CCcceEEEECCCCCCHHHHHHHHH-cC---CcEeccccccccCccee
Confidence            347999999999999999988865 46   78999999999976543

>PRK07638 acyl-CoA synthetase; Validated

Probab=97.86  E-value=4.4e-05  Score=46.21  Aligned_cols=44  Identities=11%  Similarity=-0.047  Sum_probs=35.6

Q ss_pred             CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058         11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus        11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      .+.+.++++|++++++..+++.+.+++  +.+++.||+||++.++.
T Consensus       253 ~~~~~~~~~G~~l~~~~~~~~~~~~~~--~~~~~~YG~tE~~~~~~  296 (487)
T PRK07638        253 ENKMKIISSGAKWEAEAKEKIKNIFPY--AKLYEFYGASELSFVTA  296 (487)
T ss_pred             CceeEEEEcCCCCCHHHHHHHHHHcCC--CeEEEEecCCccCceEE
Confidence            345566788889999999999998853  78999999999986543

>PRK09192 acyl-CoA synthetase; Validated

Probab=97.85  E-value=1.8e-05  Score=49.09  Aligned_cols=49  Identities=18%  Similarity=0.263  Sum_probs=38.5

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCC---ccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGG---KCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~---~~~i~~~yG~TE~~~~~   55 (59)
                      ..+++++|.+..||+++++++.+.+.+.++..   ...+++.||+||++..+
T Consensus       295 ~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~  346 (579)
T PRK09192        295 ELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAV  346 (579)
T ss_pred             ccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEE
Confidence            35678999999999999999999998876310   02378999999997544

>PRK05691 peptide synthase; Validated

Probab=97.85  E-value=3.3e-05  Score=56.60  Aligned_cols=46  Identities=22%  Similarity=0.354  Sum_probs=39.5

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..+++||.++.||+++++++.+.|.+.+++  +.+++.||.||++..+
T Consensus      3980 ~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~--~~l~n~YG~TE~t~~~ 4025 (4334)
T PRK05691       3980 QALDGLRWMLPTGEAMPPELARQWLQRYPQ--IGLVNAYGPAECSDDV 4025 (4334)
T ss_pred             ccCCCceEEEecCCcCCHHHHHHHHHhCCC--CeEEeCccCccceeEE
Confidence            356789999999999999999999887653  7899999999998644

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=97.84  E-value=3.8e-05  Score=46.26  Aligned_cols=41  Identities=20%  Similarity=0.223  Sum_probs=35.2

Q ss_pred             CCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058         10 LNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH   54 (59)
Q Consensus        10 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~   54 (59)
                      ..+||.++.+|+++++...+++.+. +   +.+.+.||+||++..
T Consensus       253 ~~~lr~~~~~g~~~~~~~~~~~~~~-~---~~~~~~YG~tE~~~~  293 (483)
T PRK03640        253 PSSFRCMLLGGGPAPKPLLEQCKEK-G---IPVYQSYGMTETASQ  293 (483)
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHh-C---CCeeeeeccCccccc
Confidence            4689999999999999999888764 6   789999999998653

>PLN02479 acetate-CoA ligase

Probab=97.83  E-value=3.3e-05  Score=47.81  Aligned_cols=41  Identities=20%  Similarity=0.197  Sum_probs=35.3

Q ss_pred             CCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccc
Q psy10058          9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGG   53 (59)
Q Consensus         9 ~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~   53 (59)
                      ++++++.+.++|+++++.+.+++.+. +   ..+++.||+||+++
T Consensus       308 ~~~~l~~~~~~G~~~~~~~~~~~~~~-~---~~~~~~yG~tE~~~  348 (567)
T PLN02479        308 PLPRVVHVMTAGAAPPPSVLFAMSEK-G---FRVTHTYGLSETYG  348 (567)
T ss_pred             cccceeEEEEcCCCCCHHHHHHHHhc-C---Cceecccccccccc
Confidence            56789999999999999999988765 6   78999999999853

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=97.83  E-value=2.8e-05  Score=47.89  Aligned_cols=43  Identities=28%  Similarity=0.213  Sum_probs=38.9

Q ss_pred             CCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058          9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH   54 (59)
Q Consensus         9 ~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~   54 (59)
                      +-.+|+.+++|+++.+++..+.+.+.+|   +..++.||+||..++
T Consensus       208 ~~~~lk~~i~gaE~~see~R~~ie~~~g---~~~~diYGltE~~g~  250 (438)
T COG1541         208 DKLSLKKGIFGAEPWSEEMRKVIENRFG---CKAFDIYGLTEGFGP  250 (438)
T ss_pred             hhcceeEEEEecccCCHHHHHHHHHHhC---CceeeccccccccCC
Confidence            3457999999999999999999999999   889999999999665

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=97.77  E-value=5e-05  Score=46.61  Aligned_cols=49  Identities=27%  Similarity=0.274  Sum_probs=38.1

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHH---hCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHS---IGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~---~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..++++||.++++|+++++...+++.+.   ++.....+++.||+||++..+
T Consensus       272 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~  323 (545)
T PRK07768        272 AFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAV  323 (545)
T ss_pred             CCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEE
Confidence            3677899999999999999999988774   441012488999999997543

>PLN03102 acyl-activating enzyme; Provisional

Probab=97.72  E-value=7.3e-05  Score=46.54  Aligned_cols=41  Identities=15%  Similarity=0.138  Sum_probs=34.0

Q ss_pred             CCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058         10 LNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH   54 (59)
Q Consensus        10 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~   54 (59)
                      .++++.+.+||+++++.+.+++.+ ++   ..+++.||+||+++.
T Consensus       299 ~~~~~~~~~gg~~~~~~~~~~~~~-~g---~~i~~~YG~tE~~~~  339 (579)
T PLN03102        299 RSGPVHVLTGGSPPPAALVKKVQR-LG---FQVMHAYGLTEATGP  339 (579)
T ss_pred             cccceEEEECCCCCCHHHHHHHHH-cC---CeEEeecCccccCcc
Confidence            456788899999999999888854 56   789999999999754

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=97.69  E-value=8e-05  Score=45.74  Aligned_cols=37  Identities=16%  Similarity=0.185  Sum_probs=34.3

Q ss_pred             CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCc
Q psy10058         11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTE   50 (59)
Q Consensus        11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE   50 (59)
                      ..++.++++|++++++..+.+++.||   +++++.||.||
T Consensus       212 ~~~k~ii~~~E~l~~~~r~~Ie~~fg---~~V~~~YG~tE  248 (430)
T TIGR02304       212 IKPKKVISVAEVLEPQDRELIRNVFK---NTVHQIYQATE  248 (430)
T ss_pred             CCceEEEEccCCCCHHHHHHHHHHhC---CCeeEccCCch
Confidence            36889999999999999999999998   89999999999

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PRK07868 acyl-CoA synthetase; Validated

Probab=97.67  E-value=0.0001  Score=48.87  Aligned_cols=43  Identities=14%  Similarity=0.273  Sum_probs=34.4

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH   54 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~   54 (59)
                      .++++||.+..  +++++++++++.+.+++  +.+++.||+||++.+
T Consensus       717 ~~~~slr~~~g--~gl~~~l~~~~~~~~~~--~~l~~~YG~TE~~~~  759 (994)
T PRK07868        717 HGNHPVRLFIG--SGMPTGLWERVVEAFAP--AHVVEFFATTDGQAV  759 (994)
T ss_pred             CCCCceEEEec--CCCCHHHHHHHHHHhCc--hheeeeeeccccccc
Confidence            45678997763  34899999999999874  789999999998643

>PRK08308 acyl-CoA synthetase; Validated

Probab=97.61  E-value=8.4e-05  Score=44.35  Aligned_cols=39  Identities=10%  Similarity=0.164  Sum_probs=33.4

Q ss_pred             ccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058         12 SLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH   54 (59)
Q Consensus        12 ~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~   54 (59)
                      +++.++++|+++++++.+++++. +   ..+++.||+||++.+
T Consensus       213 ~l~~~~~~G~~l~~~~~~~~~~~-~---~~~~~~YG~tE~~~~  251 (414)
T PRK08308        213 QFHAVMTSGTPLPEAWFYKLRER-T---TYMMQQYGCSEAGCV  251 (414)
T ss_pred             cccEEEEccCCCCHHHHHHHHHh-C---ChhhhccCccccCCe
Confidence            68888999999999999988776 4   578999999999743

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=97.61  E-value=0.00017  Score=44.51  Aligned_cols=43  Identities=19%  Similarity=0.238  Sum_probs=34.1

Q ss_pred             CCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         9 ~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      +.+++|.++.++  .++++.+++.+.++   .++++.||+||++.++.
T Consensus       292 ~~~~l~~~~~g~--~~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~~  334 (542)
T PRK06155        292 RAHRVRVALGPG--VPAALHAAFRERFG---VDLLDGYGSTETNFVIA  334 (542)
T ss_pred             ccCceEEEEEcC--CCHHHHHHHHHHcC---CCEEeeecccccCcccc
Confidence            456788777655  46888888988888   78999999999976543

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=97.32  E-value=0.00055  Score=41.77  Aligned_cols=43  Identities=14%  Similarity=0.135  Sum_probs=33.4

Q ss_pred             CCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058         10 LNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus        10 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..+++.+..+ .+++++...++.+.++   ..+++.||+||++..++
T Consensus       287 ~~~l~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~  329 (517)
T PRK08008        287 QHCLREVMFY-LNLSDQEKDAFEERFG---VRLLTSYGMTETIVGII  329 (517)
T ss_pred             cccceeeEEe-cCCCHHHHHHHHHHhC---CeEEeeccccccccccc
Confidence            3457766664 4788899998988887   88999999999975443

>PRK07867 acyl-CoA synthetase; Validated

Probab=97.31  E-value=0.00049  Score=42.46  Aligned_cols=40  Identities=30%  Similarity=0.434  Sum_probs=29.9

Q ss_pred             CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058         11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus        11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      +++|. +.||+++++.. .++.+.++   +++++.||+||++.++
T Consensus       267 ~~lr~-~~gg~~~~~~~-~~~~~~~g---~~l~~~YG~TE~~~~~  306 (529)
T PRK07867        267 NPLRI-VYGNEGAPGDI-ARFARRFG---CVVVDGFGSTEGGVAI  306 (529)
T ss_pred             cceEE-EecCCCChHHH-HHHHHHhC---CcEEEeeccccccccc
Confidence            46774 45777776654 66777887   7899999999987543

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.31  E-value=0.0001  Score=45.61  Aligned_cols=44  Identities=25%  Similarity=0.360  Sum_probs=40.8

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccc
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETG   52 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~   52 (59)
                      ...+++|||.+..||+.+++...+++...+|   |.+-+.|||.|--
T Consensus       300 ~~~~LsSLrllQVGGarl~~~~Arrv~~~lg---C~LQQVFGMAEGL  343 (542)
T COG1021         300 ERADLSSLRLLQVGGARLSATLARRVPAVLG---CQLQQVFGMAEGL  343 (542)
T ss_pred             ccCCchheeEEeecCcccCHHHHhhchhhhC---chHHHHhhhhhhh
Confidence            5678999999999999999999999999999   8999999999864

>PRK08162 acyl-CoA synthetase; Validated

Probab=97.31  E-value=0.00064  Score=41.75  Aligned_cols=40  Identities=18%  Similarity=0.110  Sum_probs=31.7

Q ss_pred             CCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccc
Q psy10058         10 LNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGG   53 (59)
Q Consensus        10 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~   53 (59)
                      +.+++.++++|++++++..+++.+ ++   ..+++.||+||+++
T Consensus       295 ~~~~~~~~~~g~~~~~~~~~~~~~-~~---~~~~~~YG~tE~~~  334 (545)
T PRK08162        295 IDHPVHAMVAGAAPPAAVIAKMEE-IG---FDLTHVYGLTETYG  334 (545)
T ss_pred             CccceEEEECCCCCCHHHHHHHHH-hC---CceeecccccccCc
Confidence            345566778889999999888765 46   78999999999853

>PRK06164 acyl-CoA synthetase; Validated

Probab=97.18  E-value=0.00068  Score=41.60  Aligned_cols=45  Identities=20%  Similarity=0.243  Sum_probs=32.8

Q ss_pred             CCCCCccceeeecC-CCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVG-EPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g-~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..++++++.+..++ .+...++.+++.+. +   +.+++.||+||++.++
T Consensus       290 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~YG~tE~~~~~  335 (540)
T PRK06164        290 RADFPSARLFGFASFAPALGELAALARAR-G---VPLTGLYGSSEVQALV  335 (540)
T ss_pred             cCCCcceeeeeeccCCcchHHHHHHHhhc-C---Cceecceeecccccee
Confidence            45678888776655 56666676766554 5   7899999999997654

>PRK13388 acyl-CoA synthetase; Provisional

Probab=97.17  E-value=0.00091  Score=41.36  Aligned_cols=41  Identities=27%  Similarity=0.440  Sum_probs=30.9

Q ss_pred             CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058         11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus        11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      .+++.+ . |++++++...++.+.++   ..+++.||+||++.++.
T Consensus       265 ~~l~~~-~-G~~~~~~~~~~~~~~~~---~~l~~~YG~tE~~~~~~  305 (540)
T PRK13388        265 NPLRVA-F-GNEASPRDIAEFSRRFG---CQVEDGYGSSEGAVIVV  305 (540)
T ss_pred             cceEEE-E-CCCCCHHHHHHHHHHhC---Cceecccccccccceee
Confidence            355533 3 55667888888888887   78999999999976543

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=97.14  E-value=0.0012  Score=41.22  Aligned_cols=41  Identities=20%  Similarity=0.442  Sum_probs=31.7

Q ss_pred             CCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058         10 LNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH   54 (59)
Q Consensus        10 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~   54 (59)
                      ..++|.+  .|+++++++.+++.+.++.  ..+++.||+||++..
T Consensus       313 ~~~l~~~--~g~~l~~~~~~~~~~~~~~--~~l~~~YG~tE~~~~  353 (600)
T PRK08279        313 DHRLRLM--IGNGLRPDIWDEFQQRFGI--PRILEFYAASEGNVG  353 (600)
T ss_pred             CcceeEE--ecCCCCHHHHHHHHHHhCc--ceeeeeeccccccee
Confidence            3456654  4677999999999999872  458999999998743

>PRK06178 acyl-CoA synthetase; Validated

Probab=96.67  E-value=0.0042  Score=38.48  Aligned_cols=45  Identities=27%  Similarity=0.302  Sum_probs=33.1

Q ss_pred             CCCCCccceeee--cCCCCCHHHHHHHHHHhCCCccceE-eccccCcccce
Q psy10058          7 KHDLNSLRVLGS--VGEPINPEAWQWYYHSIGGGKCSIV-DTFWQTETGGH   54 (59)
Q Consensus         7 ~~~~~~lr~~~~--~g~~~~~~~~~~~~~~~~~~~~~i~-~~yG~TE~~~~   54 (59)
                      ..++++++.+..  .+++++++..+++++.++   ..++ +.||+||++..
T Consensus       321 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~YG~tE~~~~  368 (567)
T PRK06178        321 EYDLSSLRQVRVVSFVKKLNPDYRQRWRALTG---SVLAEAAWGMTETHTC  368 (567)
T ss_pred             CCCcchheeeeeccccccCCHHHHHHHHHHhC---Cccccccccccccccc
Confidence            345667776543  347899999999998887   4555 57999998654

>KOG1179|consensus

Probab=95.26  E-value=0.037  Score=35.79  Aligned_cols=44  Identities=20%  Similarity=0.405  Sum_probs=33.0

Q ss_pred             CCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         9 ~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      +.+.+|...-.|  +-+++|+.+.+.||.  ..+.+.||.||.....+
T Consensus       355 r~HkVRla~GNG--LR~diW~~Fv~RFg~--~~IgE~YgaTEgn~~~~  398 (649)
T KOG1179|consen  355 RQHKVRLAYGNG--LRPDIWQQFVKRFGI--IKIGEFYGATEGNSNLV  398 (649)
T ss_pred             cCceEEEEecCC--CCchHHHHHHHHcCC--CeEEEEeccccCcceee
Confidence            345677654444  669999999999994  56899999999875443

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.57  E-value=0.23  Score=31.46  Aligned_cols=40  Identities=23%  Similarity=0.140  Sum_probs=32.3

Q ss_pred             ccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccc
Q psy10058         12 SLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETG   52 (59)
Q Consensus        12 ~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~   52 (59)
                      .+|.+..+|+.++..+...+...... ...+.+.||-||+.
T Consensus       486 ~lr~~~~gGe~l~~~~~~~~~~~~~~-~~~l~~~ygpTe~~  525 (642)
T COG1020         486 RLRQLLSGGEALPLALVQRLLQLAAL-ARRLLNLYGPTEAT  525 (642)
T ss_pred             cccEEEEcCCCCCHHHHHHHHHhccc-cceEeeccCccHHh
Confidence            48999999999999999988776531 15688999999954

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=90.03  E-value=0.46  Score=29.05  Aligned_cols=43  Identities=21%  Similarity=0.197  Sum_probs=27.4

Q ss_pred             cceeeecC------CCCC-HHHHHHHHHHhCC-CccceEeccccCccccee
Q psy10058         13 LRVLGSVG------EPIN-PEAWQWYYHSIGG-GKCSIVDTFWQTETGGHV   55 (59)
Q Consensus        13 lr~~~~~g------~~~~-~~~~~~~~~~~~~-~~~~i~~~yG~TE~~~~~   55 (59)
                      .+.+.+||      +.++ ++..+.+.+.+|- ....+++.|||||.....
T Consensus       223 s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~  273 (365)
T PF04443_consen  223 SIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQA  273 (365)
T ss_pred             CEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhh
Confidence            44555665      3454 5666777777871 112588999999976543

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins

Probab=87.48  E-value=0.74  Score=20.36  Aligned_cols=23  Identities=17%  Similarity=0.201  Sum_probs=19.9

Q ss_pred             ceeeecCCCCCHHHHHHHHHHhC
Q psy10058         14 RVLGSVGEPINPEAWQWYYHSIG   36 (59)
Q Consensus        14 r~~~~~g~~~~~~~~~~~~~~~~   36 (59)
                      +.+.++|.|++.+..+.++..++
T Consensus        22 ~wvSf~GrPltdevK~a~k~i~~   44 (49)
T PF06543_consen   22 KWVSFDGRPLTDEVKEAMKLIFG   44 (49)
T ss_pred             HheeeCCeeCCHHHHHHHHHHHh
Confidence            35778999999999999988887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	59
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		1e-16
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		1e-16
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		1e-16
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		1e-16
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		1e-16
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		1e-16
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		3e-16
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		7e-15

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 43/50 (86%)
Query: 9   DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           D +SLR+LGSVGEPINPEAW+WY+  IG  KC +VDT+WQTETGG ++TP
Sbjct: 376 DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITP 425

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 43/50 (86%)
Query: 9   DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           D +SLR+LGSVGEPINPEAW+WY+  IG  KC +VDT+WQTETGG ++TP
Sbjct: 376 DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITP 425

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 43/50 (86%)
Query: 9   DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           D +SLR+LGSVGEPINPEAW+WY+  IG  KC +VDT+WQTETGG ++TP
Sbjct: 376 DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITP 425

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 43/50 (86%)
Query: 9   DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           D +SLR+LGSVGEPINPEAW+WY+  IG  KC +VDT+WQTETGG ++TP
Sbjct: 376 DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITP 425

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 43/50 (86%)
Query: 9   DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           D +SLR+LGSVGEPINPEAW+WY+  IG  KC +VDT+WQTETGG ++TP
Sbjct: 376 DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITP 425

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 43/50 (86%)
Query: 9   DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           D +SLR+LGSVGEPINPEAW+WY+  IG  KC +VDT+WQTETGG ++TP
Sbjct: 376 DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITP 425

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 42/50 (84%)
Query: 9   DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           D +SLR+LGS GEPINPEAW+WY+  IG  KC +VDT+WQTETGG ++TP
Sbjct: 376 DRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITP 425

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 40/56 (71%)
Query: 3   SYPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           SY + H L SLR LGSVGEPI  E W+WY   IG  +  IVDT+WQTE+G H++TP
Sbjct: 376 SYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTP 431

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	59
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	2e-37
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	5e-37
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	8e-22
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	3e-19
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	6e-09

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score =  129 bits (326), Expect = 2e-37
 Identities = 33/56 (58%), Positives = 40/56 (71%)

Query: 3   SYPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
           SY + H L SLR LGSVGEPI  E W+WY   IG  +  IVDT+WQTE+G H++TP
Sbjct: 376 SYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTP 431

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score =  128 bits (323), Expect = 5e-37
 Identities = 35/56 (62%), Positives = 44/56 (78%)

Query: 3   SYPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTP 58
              +  D +SLR+LGSVGEPINPEAW+WY+  IG  KC +VDT+WQTETGG ++TP
Sbjct: 370 KAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITP 425

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 85.3 bits (212), Expect = 8e-22
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 1   MLSYPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETG 52
           +      ++ ++L+     GEP+NPE +  +    G     +++ F QTET 
Sbjct: 331 IKEDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTG---IKLMEGFGQTETV 379

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 77.7 bits (192), Expect = 3e-19
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 1   MLSYPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTPR 59
           +      +    L+   +VGE + PE  + +    G     I +++ QTETG   +  +
Sbjct: 312 LQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQTG---LDIRESYGQTETGLTCMVSK 367

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score = 48.7 bits (117), Expect = 6e-09
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 1   MLSYP--QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLT 57
           ML  P        ++R+  S GE +  E  + +    G   C I+D    TE   H+  
Sbjct: 288 MLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFG---CEILDGIGSTEM-LHIFL 342

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	59
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	98.91
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	98.91
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	98.9
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	98.8
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	98.79
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	98.78
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	98.77
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	98.77
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	98.76
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	98.73
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	98.73
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	98.71
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	98.69
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	98.68
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	98.68
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	98.68
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	98.67
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	98.67
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	98.67
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	98.66
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	98.65
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	98.64
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	98.64
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	98.58
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	98.57
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	98.57
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	98.56
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	98.53
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	98.52
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	98.49
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	98.48
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	98.47
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	98.33
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	98.31
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	98.2
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	97.88

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=98.91  E-value=3.5e-09  Score=65.52  Aligned_cols=51  Identities=57%  Similarity=1.137  Sum_probs=43.2

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..+++++||.+.++|+|+++++++++.+.++..++.+++.||+||++.+++
T Consensus       379 ~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~  429 (663)
T 1ry2_A          379 ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLV  429 (663)
T ss_dssp             SSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSE
T ss_pred             ccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeee
Confidence            456889999999999999999999999988622367999999999986544

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=98.91  E-value=3.2e-09  Score=65.47  Aligned_cols=51  Identities=65%  Similarity=1.305  Sum_probs=43.3

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..+++++||.+.++|+++++++++++.+.++..++.+++.||+||++.+++
T Consensus       373 ~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~  423 (652)
T 1pg4_A          373 EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMI  423 (652)
T ss_dssp             TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSB
T ss_pred             ccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCccccccee
Confidence            456889999999999999999999999988622367999999999986554

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=98.90  E-value=2.6e-09  Score=65.18  Aligned_cols=48  Identities=27%  Similarity=0.465  Sum_probs=41.0

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ...++++||.+++||+++++++.+++.+.++   +.+++.||+||++.+++
T Consensus       336 ~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~  383 (580)
T 3etc_A          336 SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTG---IKLMEGFGQTETVVTIA  383 (580)
T ss_dssp             ---CCTTCCEEEECSSCCCHHHHHHHHHHHS---CCCEEEECCTTSSCCEE
T ss_pred             ccCCCccceEEEEccCCCCHHHHHHHHHHhC---CeEecccccccccceee
Confidence            4567889999999999999999999999988   88999999999976544

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=98.80  E-value=8.7e-09  Score=60.92  Aligned_cols=52  Identities=17%  Similarity=0.240  Sum_probs=42.8

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCC---CccceEeccccCcccceecc
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGG---GKCSIVDTFWQTETGGHVLT   57 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~---~~~~i~~~yG~TE~~~~~~~   57 (59)
                      ...++++||.+++||+++++++.+++.+.++.   ..+.+.+.||+||++.+++.
T Consensus       306 ~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~  360 (480)
T 3t5a_A          306 AGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVAT  360 (480)
T ss_dssp             TTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEE
T ss_pred             cccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEee
Confidence            45778999999999999999999999998741   01468999999999876543

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=98.79  E-value=8.5e-09  Score=60.70  Aligned_cols=43  Identities=21%  Similarity=0.193  Sum_probs=39.0

Q ss_pred             CCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058          9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH   54 (59)
Q Consensus         9 ~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~   54 (59)
                      ++++||.+++||+++++++.+++.+.++   +.+++.||+||+++.
T Consensus       204 ~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~v~~~YG~TE~~~~  246 (436)
T 3qov_A          204 RETTLKTLVIGAEPHTDEQRRKIERMLN---VKAYNSFGMTEMNGP  246 (436)
T ss_dssp             TSSSCCEEEEESSCCCHHHHHHHHHHHT---SEEEEEEEEGGGTEE
T ss_pred             ccCCccEEEEeCCcCCHHHHHHHHHHhC---ccEEecCcchhhcCC
Confidence            3678999999999999999999999998   899999999999544

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=98.78  E-value=8.7e-09  Score=62.10  Aligned_cols=48  Identities=29%  Similarity=0.356  Sum_probs=42.1

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ...++++||.+++||+++++++.+++.+.+++  +.+++.||+||++.++
T Consensus       292 ~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~--~~l~~~YG~TE~~~~~  339 (536)
T 3ni2_A          292 DKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQ--ARLGQGYGMTEAGPVL  339 (536)
T ss_dssp             GGSCCTTCCEEEEESSCCCHHHHHHHHHHCTT--SEEEEEEECGGGSSEE
T ss_pred             ccCCCccceEEEECCCCCCHHHHHHHHHHCCC--CCccccccccccchhh
Confidence            35678899999999999999999999999843  8899999999998654

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=98.77  E-value=1.3e-08  Score=62.01  Aligned_cols=47  Identities=28%  Similarity=0.372  Sum_probs=41.6

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..++++||.+++||+++++++.+++.+.++   +.+++.||+||++.+++
T Consensus       318 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~  364 (570)
T 3c5e_A          318 SYKFPHLQNCVTVGESLLPETLENWRAQTG---LDIRESYGQTETGLTCM  364 (570)
T ss_dssp             TCCCTTCCEEEEESSCCCHHHHHHHHHHHS---CCCEEEEEETTTEEEEE
T ss_pred             ccccccceEEEEcCCcCCHHHHHHHHHHhC---Cchhhccchhhccccee
Confidence            456789999999999999999999999887   88999999999986543

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=98.77  E-value=1.2e-08  Score=61.66  Aligned_cols=49  Identities=27%  Similarity=0.257  Sum_probs=41.8

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ...++++||.+++||+++++++.+++.+.++.  ..+.+.||+||++..++
T Consensus       302 ~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~v~~~YG~TE~~~~~~  350 (550)
T 3rix_A          302 DKYDLSNLHEIASGGAPLSKEVGEAVAKRFHL--PGIRQGYGLTETTSAIL  350 (550)
T ss_dssp             GGSCCTTCCEEEECSSCCCHHHHHHHHHHTTC--SCCEEEEECGGGSSEEE
T ss_pred             cccCcccccEEEEecCCCCHHHHHHHHHHcCC--CccccccCcCcccccee
Confidence            35678899999999999999999999999872  34889999999986554

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=98.76  E-value=1.6e-08  Score=60.58  Aligned_cols=49  Identities=18%  Similarity=0.169  Sum_probs=42.4

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ...++++||.++++|+++++++.+++.+.+++  +.+++.||+||++.+++
T Consensus       256 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~--~~i~~~YG~TE~~~~~~  304 (512)
T 3fce_A          256 SESMLPNMKTFLFCGEVLPNEVARKLIERFPK--ATIMNTYGPTEATVAVT  304 (512)
T ss_dssp             STTTSTTCCEEEECSSCCCHHHHHHHHHHCTT--CEEEEEECCGGGSSCSE
T ss_pred             cchhCccccEEEEecCcCCHHHHHHHHHHCCC--CEEEeCcccChhhhhee
Confidence            34678899999999999999999999999853  88999999999986543

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=98.73  E-value=2.2e-08  Score=60.44  Aligned_cols=46  Identities=24%  Similarity=0.288  Sum_probs=40.1

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..++++||.+++||+++++++.+++ +.++   +.+++.||+||++.+++
T Consensus       289 ~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g---~~~~~~YG~TE~~~~~~  334 (541)
T 1v25_A          289 GHRLKTLRRLVVGGSAAPRSLIARF-ERMG---VEVRQGYGLTETSPVVV  334 (541)
T ss_dssp             TCCCSSCCEEEECSSCCCHHHHHHH-HHTT---CEEEEEEECGGGSSEEE
T ss_pred             CCcchhccEEEECCCCCCHHHHHHH-HHhC---Cceeeccccccccccee
Confidence            3577899999999999999999999 6677   88999999999986554

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=98.73  E-value=1.8e-08  Score=60.98  Aligned_cols=48  Identities=23%  Similarity=0.236  Sum_probs=41.8

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..++++||.+++||+++++++.+++.+.++.  +.+++.||+||++.+++
T Consensus       305 ~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~i~~~YG~TE~~~~~~  352 (548)
T 2d1s_A          305 KYDLSNLVEIASGGAPLSKEVGEAVARRFNL--PGVRQGYGLTETTSAII  352 (548)
T ss_dssp             GSCCTTCCEEEECSSCCCHHHHHHHHHHTTC--SCCEEEEECGGGSSEEE
T ss_pred             cccccceeEEEEcCccCCHHHHHHHHHHcCC--Cceeeccccccccceee
Confidence            4578899999999999999999999999853  77999999999986554

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=98.71  E-value=2.7e-08  Score=59.67  Aligned_cols=47  Identities=17%  Similarity=0.268  Sum_probs=41.4

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ...++++||.+++||+++++++.+++.+.++   ..+++.||+||++..+
T Consensus       263 ~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~  309 (503)
T 4fuq_A          263 TKETTGHMRLFISGSAPLLADTHREWSAKTG---HAVLERYGMTETNMNT  309 (503)
T ss_dssp             STTTTTTCCEEEECSSCCCHHHHHHHHHHHS---CCEEECCEETTTEECB
T ss_pred             cccchhhcEEEEECCCCCCHHHHHHHHHHhC---CCccceEcccccCccc
Confidence            3456788999999999999999999999988   7899999999997554

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=98.69  E-value=3.3e-08  Score=59.23  Aligned_cols=49  Identities=16%  Similarity=0.075  Sum_probs=42.1

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ...+++++|.+.++|+++++++.+++.+.+++  +.+++.||+||++..++
T Consensus       255 ~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~--~~i~~~YG~TE~~~~~~  303 (511)
T 3e7w_A          255 SQDLLPHADTFMFCGEVLPVSVAKALLERFPK--AKIFNTYGPTEATVAVT  303 (511)
T ss_dssp             STTTCTTCCEEEECSSCCCHHHHHHHHHHCTT--CEEEECCCCGGGSSCSE
T ss_pred             ccccCCcccEEEEecCCCCHHHHHHHHHHCCC--cEEEeCcccchheeeee
Confidence            34567899999999999999999999999853  88999999999976543

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=98.68  E-value=7.1e-09  Score=59.93  Aligned_cols=45  Identities=16%  Similarity=0.194  Sum_probs=39.2

Q ss_pred             CCCccceeeecCCCCCHHHHHHHH-HHhCCCccceEeccccCccccee
Q psy10058          9 DLNSLRVLGSVGEPINPEAWQWYY-HSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         9 ~~~~lr~~~~~g~~~~~~~~~~~~-~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ++++||.+++||+++++++.+++. +.+++  +.+++.||+||+++++
T Consensus       229 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~--~~v~~~YG~TE~~~~~  274 (369)
T 3hgu_A          229 MKQSLAQITLGGTELNLDEIKFIASEILPD--CEFSASYGSTSALGVS  274 (369)
T ss_dssp             HHHHCSEEEEESSCCCHHHHHHHHHHTCTT--SEEEEEEEEGGGTEEE
T ss_pred             ccCCeeEEEECCccCCHHHHHHHHHHhCCC--cEEEcccCchhhhcce
Confidence            457899999999999999999999 88832  8899999999987654

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=98.68  E-value=4e-08  Score=59.48  Aligned_cols=51  Identities=20%  Similarity=0.198  Sum_probs=42.1

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCC---CccceEeccccCcccceec
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGG---GKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~---~~~~i~~~yG~TE~~~~~~   56 (59)
                      ...++++||.+++||+++++++.+++.+.++.   .+..+++.||+||++.+++
T Consensus       284 ~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~  337 (590)
T 3kxw_A          284 EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVT  337 (590)
T ss_dssp             TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEE
T ss_pred             cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceee
Confidence            35678999999999999999999999998741   0146899999999987655

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=98.68  E-value=1.5e-08  Score=58.80  Aligned_cols=47  Identities=19%  Similarity=0.195  Sum_probs=39.8

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ...++++||.+++||+++++++.+++.+ ++   +.+++.||+||++..++
T Consensus       143 ~~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~---~~~~~~YG~TEt~~~~~  189 (358)
T 4gs5_A          143 TSGQVDRLGKVLLGGAPVNHALAMQISD-LA---MPVYQSYGMTETVSHVA  189 (358)
T ss_dssp             TGGGGGGGCSEEECSSCCCHHHHHHHHT-CS---SCEEEEEECGGGSSEEE
T ss_pred             ccccCCcceEEEEcccCCCchheecccc-cC---ceEEeccccccccceee
Confidence            3456889999999999999999998865 46   78999999999986554

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=98.67  E-value=2.6e-08  Score=58.74  Aligned_cols=41  Identities=20%  Similarity=0.136  Sum_probs=37.3

Q ss_pred             CCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccc
Q psy10058         10 LNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGG   53 (59)
Q Consensus        10 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~   53 (59)
                      +++||.+++||+++++++.+++++.++   +.+++.||+||+++
T Consensus       211 ~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~v~~~YG~TE~~g  251 (443)
T 2y4o_A          211 ESSLKIGIFGAEPWTQALRNEVETRVG---IDALDIYGLSEVMG  251 (443)
T ss_dssp             GSSCCEEEEESSCCCHHHHHHHHHHHT---CEEEEEEEETTTTE
T ss_pred             cCCceEEEECCCcCCHHHHHHHHHHhC---cCEEeccCchhhcC
Confidence            478999999999999999999999887   88999999999743

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=98.67  E-value=2.7e-08  Score=58.61  Aligned_cols=41  Identities=24%  Similarity=0.194  Sum_probs=37.3

Q ss_pred             CCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccc
Q psy10058         10 LNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGG   53 (59)
Q Consensus        10 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~   53 (59)
                      +++||.+++||+++++++.+++++.++   +.+++.||+||+++
T Consensus       209 ~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~v~~~YG~TE~~g  249 (437)
T 2y27_A          209 QSSLRIGIFGAEPWTNDMRVAIEQRMG---IDAVDIYGLSEVMG  249 (437)
T ss_dssp             GSSCCEEEEESSCCCHHHHHHHHHHHT---SEEEEEEEETTTTE
T ss_pred             cCCeeEEEEcCccCCHHHHHHHHHHHC---cCEEecCCchhhcC
Confidence            478999999999999999999999888   88999999999843

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=98.66  E-value=4.6e-08  Score=58.60  Aligned_cols=48  Identities=13%  Similarity=0.158  Sum_probs=41.6

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..++++||.+.++|+++++++.+++.+.+++  +.+++.||+||++.+++
T Consensus       260 ~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~--~~i~~~YG~TE~~~~~~  307 (521)
T 3l8c_A          260 QAKMPALTHFYFDGEELTVSTARKLFERFPS--AKIINAYGPTEATVALS  307 (521)
T ss_dssp             TTTCTTCCEEEECSSCCCHHHHHHHHHHCTT--CEEEEEECCGGGSSCSE
T ss_pred             cccCccceEEEEecccCCHHHHHHHHHHCCC--ceEEeCcCccHHhhhhc
Confidence            4567899999999999999999999999842  88999999999976543

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=98.65  E-value=3.7e-08  Score=59.44  Aligned_cols=45  Identities=29%  Similarity=0.367  Sum_probs=40.2

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccce
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGH   54 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~   54 (59)
                      ..++++||.+++||+++++++.+++.+.++   +.+++.||+||++..
T Consensus       294 ~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~  338 (539)
T 1mdb_A          294 RDDLSSLQVLQVGGAKFSAEAARRVKAVFG---CTLQQVFGMAEGLVN  338 (539)
T ss_dssp             CCCCTTCCEEEEESSCCCHHHHTTHHHHTC---SEEEEEEECTTSCEE
T ss_pred             CCCccceeEEEEcCCCCCHHHHHHHHHHhC---CcEEEEEcCCCCccc
Confidence            457889999999999999999999999888   889999999997543

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=98.64  E-value=1.4e-08  Score=61.40  Aligned_cols=46  Identities=26%  Similarity=0.275  Sum_probs=40.0

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..++++||.+.+||+++++++.+++.+.++   +.+++.||+||++..+
T Consensus       290 ~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~  335 (562)
T 3ite_A          290 PEDAPHLVYLGVGGEKMTPRTQQIWSSSDR---VALVNVYGPTEVTIGC  335 (562)
T ss_dssp             GGGSTTCCEEEEESSCCCHHHHHHHTTCSS---CEEEEEECCGGGCSCS
T ss_pred             ccccCceEEEEEecCCCCHHHHHHHhhCCC---cEEEEeeccchheeee
Confidence            356789999999999999999999988766   8899999999997544

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=98.64  E-value=4.9e-08  Score=58.42  Aligned_cols=43  Identities=19%  Similarity=0.167  Sum_probs=39.1

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccc
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETG   52 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~   52 (59)
                      ..++++||.+++||+++++++.+++.+.++   ..+++.||+||++
T Consensus       268 ~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~  310 (504)
T 1t5h_X          268 SLKLDSLRHVTFAGATMPDAVLETVHQHLP---GEKVNIYGTTEAM  310 (504)
T ss_dssp             CCCCTTCCEEEECCTTCCHHHHHHHHHHCC---SEEEEEEEETTTE
T ss_pred             cccCccccEEEEcCCcCCHHHHHHHHHhcC---cceeeeecccccc
Confidence            456889999999999999999999999987   7899999999993

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=98.58  E-value=5.7e-08  Score=62.03  Aligned_cols=49  Identities=24%  Similarity=0.260  Sum_probs=42.4

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ...++++||.+++||+++++++.+++.+.+++  +.+++.||+||++.+++
T Consensus       339 ~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~--~~l~~~YG~TE~~~~~~  387 (979)
T 3tsy_A          339 EKYDLSSIRVVKSGAAPLGKELEDAVNAKFPN--AKLGQGYGMTEAGPVLA  387 (979)
T ss_dssp             GTSCCTTCCEEEESSCCCCSSHHHHHHHHCTT--CEEEECEECGGGCSEEE
T ss_pred             cCCCccceEEEEEcCCCCCHHHHHHHHHHCCC--CeEEeeechhhhhHHHH
Confidence            34578899999999999999999999999853  88999999999986543

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=98.57  E-value=1.5e-07  Score=56.91  Aligned_cols=49  Identities=16%  Similarity=0.112  Sum_probs=40.8

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHH----hCCCccceEeccccCcccceec
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHS----IGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~----~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      .++++||.+.+||+++++++.+++.+.    ++..++.+++.||+||++.+++
T Consensus       293 ~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~  345 (549)
T 3g7s_A          293 YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVT  345 (549)
T ss_dssp             CCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEE
T ss_pred             CCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhh
Confidence            578899999999999999999999887    5421257889999999987654

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=98.57  E-value=8.7e-08  Score=57.61  Aligned_cols=45  Identities=20%  Similarity=0.252  Sum_probs=39.2

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..++++||.+++||+++++++.+++.+. +   +.+++.||+||++..+
T Consensus       280 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~---~~~~~~YG~TE~~~~~  324 (517)
T 3r44_A          280 ELDAPDFRYFITGGAPMPEALIKIYAAK-N---IEVVQGYALTESCGGG  324 (517)
T ss_dssp             HCCCTTCCEEEECSSCCCHHHHHHHHHT-T---CEEEEEEECGGGTTCE
T ss_pred             cCCCCcccEEEECCCCCCHHHHHHHHhc-C---CcEEEeecccccccce
Confidence            3567899999999999999999999776 6   8899999999997644

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=98.56  E-value=5.1e-08  Score=58.92  Aligned_cols=45  Identities=16%  Similarity=0.185  Sum_probs=40.0

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .++++||.+++||+++++++.+++.+.++   +.+++.||+||++..+
T Consensus       304 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~  348 (544)
T 3o83_A          304 DQIQSLKLLQVGGASFPESLARQVPEVLN---CKLQQVFGMAEGLVNY  348 (544)
T ss_dssp             HHHTTCCEEEEESSCCCHHHHTHHHHHHC---SEEEEEEECTTSCEEE
T ss_pred             ccCCcceEEEEcCCCCCHHHHHHHHHHhC---CcEEeeecccccccee
Confidence            35678999999999999999999999998   8999999999987543

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=98.53  E-value=1.5e-07  Score=56.50  Aligned_cols=42  Identities=26%  Similarity=0.361  Sum_probs=37.9

Q ss_pred             CccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058         11 NSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus        11 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .+||.+++||+++++++.+++.+.++   +.+++.||+||++.++
T Consensus       300 ~~lr~~~~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~  341 (529)
T 2v7b_A          300 VAIRICTSAGEALPREIGERFTAHFG---CEILDGIGSTEMLHIF  341 (529)
T ss_dssp             CCCCEEEECSSCCCHHHHHHHHHHHS---CCEEEEEECTTTSSEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHhC---CceeeeEchhhcCcee
Confidence            37999999999999999999999888   8899999999996554

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=98.52  E-value=1.7e-07  Score=57.37  Aligned_cols=45  Identities=22%  Similarity=0.252  Sum_probs=40.4

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .++++||.+++||+++++++.+++.+.++   +.+++.||+||++..+
T Consensus       299 ~~l~~lr~i~~gGe~l~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~  343 (617)
T 3rg2_A          299 AQLASLKLLQVGGARLSATLAARIPAEIG---CQLQQVFGMAEGLVNY  343 (617)
T ss_dssp             TTTTTCCEEEEESSCCCHHHHHHHHHHTC---SEEEEEEEETTEEEEE
T ss_pred             ccCCCccEEEEcCCcCCHHHHHHHHHHhC---CcEEEEeccCcceeec
Confidence            46889999999999999999999999987   8999999999987544

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=98.49  E-value=1.3e-07  Score=58.25  Aligned_cols=46  Identities=17%  Similarity=0.099  Sum_probs=39.0

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .++++||.+++||++++++..+++.+.+++  +.+++.||+||++.++
T Consensus       273 ~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~--~~l~n~YG~TE~~~~~  318 (620)
T 4dg8_A          273 DCLGGLRQLLTGGDILSVPHVRRALLRHPR--LHLVNGYGPTENTTFT  318 (620)
T ss_dssp             GGGTTCSEEEEESSCCCHHHHHHHHHHCTT--CEEEEEECCGGGCSCS
T ss_pred             hhCCCccEEEEEeCcCCHHHHHHHHHhCCC--eEEEeeEchhhhhhhe
Confidence            457889999999999999888888877642  7899999999997654

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=98.48  E-value=1.5e-07  Score=57.13  Aligned_cols=46  Identities=13%  Similarity=0.090  Sum_probs=39.6

Q ss_pred             CCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          8 HDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         8 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      .++++||.+++||++++++..+++.+.+++  +.+++.||+||+++++
T Consensus       323 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~--~~l~~~YG~TE~~~~~  368 (570)
T 4gr5_A          323 EAFEGVRYAITGGEPASVPHVAKARRDHPA--LRLGNGYGPAESMGFT  368 (570)
T ss_dssp             GGGTTCSEEEEESSCCCHHHHHHHHHHCTT--CEEEEEECCGGGCSCS
T ss_pred             hhCCCceEEEEecccCCHHHHHHHHHhCCC--cEEEEeechhhheeee
Confidence            357889999999999999999999888753  7899999999987554

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=98.47  E-value=1.1e-07  Score=57.15  Aligned_cols=45  Identities=18%  Similarity=0.139  Sum_probs=39.5

Q ss_pred             CCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          9 DLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         9 ~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      +++++|.+++||+++++++.+++.+.++   +.+++.||+||++..++
T Consensus       270 ~l~~lr~i~~gg~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~  314 (505)
T 3nyq_A          270 ALAGARLLVSGSAALPVHDHERIAAATG---RRVIERYGMTETLMNTS  314 (505)
T ss_dssp             HHHHCSEEEECSSCCCHHHHHHHHHHHS---CCCEEEEEETTTEEEEE
T ss_pred             ccccceEEEECCCCCCHHHHHHHHHhcC---Ceeecccchhhcccccc
Confidence            4567899999999999999999999988   88999999999976543

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=98.33  E-value=6.8e-07  Score=53.33  Aligned_cols=40  Identities=18%  Similarity=0.150  Sum_probs=35.5

Q ss_pred             ccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058         12 SLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus        12 ~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      +||.+.+||+++++++.+++.+ ++   +.+++.||+||++..+
T Consensus       275 ~lr~i~~gG~~l~~~~~~~~~~-~~---~~~~~~YG~TE~~~~~  314 (501)
T 3ipl_A          275 NLQKILLGGAKLSATMIETALQ-YN---LPIYNSFGMTETCSQF  314 (501)
T ss_dssp             TCCEEEECSSCCCHHHHHHHHH-TT---CCEEEEEEEGGGTEEE
T ss_pred             cccEEEEeCCCCCHHHHHHHHH-hC---CCEeccccccccccce
Confidence            7999999999999999998876 46   8899999999997644

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=98.31  E-value=3.5e-07  Score=55.67  Aligned_cols=44  Identities=16%  Similarity=0.209  Sum_probs=36.5

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..++++||.+++||+++++++.+++.+.     +.+++.||+||++.++
T Consensus       289 ~~~~~~lr~~~~gG~~l~~~~~~~~~~~-----~~~~~~YG~TE~~~~~  332 (563)
T 1amu_A          289 PERILSIQTLITAGSATSPSLVNKWKEK-----VTYINAYGPTETTICA  332 (563)
T ss_dssp             TTTCCSCSEEEEESSCCCHHHHHHHTTT-----SEEEEEECCGGGSSCS
T ss_pred             hcccccccEEEEEEecCCHHHHHHHHhC-----CeEEEEECcCHHhHhh
Confidence            3457889999999999999998887553     5789999999997554

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=98.20  E-value=1.2e-06  Score=57.59  Aligned_cols=44  Identities=16%  Similarity=0.139  Sum_probs=38.4

Q ss_pred             CCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058         10 LNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus        10 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      +++||.+++||++++++..+++.+.++.  ..+++.||+||++..+
T Consensus       719 ~~~lr~~~~gGe~l~~~~~~~~~~~~~~--~~l~n~YG~TE~~~~~  762 (1304)
T 2vsq_A          719 MKGLRCILFGGERASVPHVRKALRIMGP--GKLINCYGPTEGTVFA  762 (1304)
T ss_dssp             HHTCSEEEEESSCCCHHHHHHHHHHHCT--TCEEEEECCGGGSSCS
T ss_pred             CCCccEEEEecCCCCHHHHHHHHHhCCC--CEEEEeEChhHHhHHh
Confidence            5679999999999999999999988863  6899999999997654

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=97.88  E-value=7.7e-06  Score=48.95  Aligned_cols=45  Identities=27%  Similarity=0.347  Sum_probs=36.4

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..++++||.+..+|++   +..+++.+.+++  +.+++.||+||++.+++
T Consensus       268 ~~~l~~lr~~~~~g~~---~~~~~~~~~~~~--~~~~~~YG~TE~~~~~~  312 (509)
T 3ivr_A          268 PAQLASLRAVTGLDTP---ETIERFEATCPN--ATFWATFGQSETSGLST  312 (509)
T ss_dssp             GGGGTTCCEEEEECCH---HHHHHHHHHCTT--CEEEEEEEEGGGTEEEE
T ss_pred             ccchhhhheecccCCh---HHHHHHHHhcCC--CeEEcccCccccccccc
Confidence            4567889999999876   778888888842  88999999999986543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	59
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	6e-15
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	1e-11

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score = 64.7 bits (157), Expect = 6e-15
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query: 5   PQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTPR 59
            +  D +SLR+LGSVGEPINPEAW+WY+  IG  KC +VDT+WQTETGG ++TP 
Sbjct: 368 IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL 422

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (131), Expect = 1e-11
 Identities = 33/57 (57%), Positives = 40/57 (70%)

Query: 3   SYPQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLTPR 59
           SY + H L SLR LGSVGEPI  E W+WY   IG  +  IVDT+WQTE+G H++TP 
Sbjct: 353 SYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPL 409

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	59
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	99.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	98.69
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	98.47
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	98.33
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	98.09
d1amua_	514	Phenylalanine activating domain of gramicidin synt	97.82
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	96.94

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.00  E-value=4.3e-10  Score=67.86  Aligned_cols=52  Identities=65%  Similarity=1.296  Sum_probs=44.6

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceecc
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLT   57 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~   57 (59)
                      ..+++++||.+.++|+|+++++++++.+.++..++.+++.||+||++++++.
T Consensus       369 ~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~  420 (643)
T d1pg4a_         369 EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT  420 (643)
T ss_dssp             TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBC
T ss_pred             cccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEe
Confidence            5678899999999999999999999999986423679999999999876553

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=2.6e-08  Score=59.42  Aligned_cols=52  Identities=56%  Similarity=1.098  Sum_probs=43.8

Q ss_pred             CCCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          5 PQKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         5 ~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ...+++++||.+.++|+|+++++++++.+.+|.....+++.||+||++...+
T Consensus       355 ~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~  406 (640)
T d1ry2a_         355 IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLV  406 (640)
T ss_dssp             SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSE
T ss_pred             cccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccccc
Confidence            3567899999999999999999999999998742246899999999986543

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=98.47  E-value=1.2e-07  Score=54.83  Aligned_cols=50  Identities=26%  Similarity=0.248  Sum_probs=42.5

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceecc
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVLT   57 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~   57 (59)
                      ...++++|+.+.+||++++++...++.+.++.  ..+.+.||+||++++++.
T Consensus       299 ~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~--~~~~~~YG~TE~~~~~~~  348 (541)
T d1lcia_         299 DKYDLSNLHEIASGGAPLSKEVGEAVAKRFHL--PGIRQGYGLTETTSAILI  348 (541)
T ss_dssp             GGSCCTTCCEEECTTCCCCHHHHHHHHHHTTC--SCCBCEECCGGGSSCSEE
T ss_pred             cccccccceEEEecccccccccccccccccCC--ceeeecCCccccCceEEe
Confidence            34577899999999999999999999999873  568899999999876653

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=98.33  E-value=5.4e-07  Score=52.25  Aligned_cols=46  Identities=24%  Similarity=0.266  Sum_probs=39.8

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ..++++||.+++||++++++..++++ .++   ..+.+.||+||++.++.
T Consensus       282 ~~~~~~lr~~~~gG~~~~~~~~~~~~-~~~---~~i~~~yG~te~~~~~~  327 (534)
T d1v25a_         282 GHRLKTLRRLVVGGSAAPRSLIARFE-RMG---VEVRQGYGLTETSPVVV  327 (534)
T ss_dssp             TCCCSSCCEEEECSSCCCHHHHHHHH-HTT---CEEEEEEECGGGSSEEE
T ss_pred             cccccceeEEEEecCCCCHHHHHHHH-HhC---Ceeeeecccccccccee
Confidence            46789999999999999999999876 456   78999999999987764

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=98.09  E-value=3.6e-06  Score=47.68  Aligned_cols=48  Identities=17%  Similarity=0.165  Sum_probs=41.5

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ...++++||.+..||++++++...++...++   ..+.+.||+||++..+.
T Consensus       267 ~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~---~~~~~~yg~~e~~~~~~  314 (503)
T d3cw9a1         267 SSLKLDSLRHVTFAGATMPDAVLETVHQHLP---GEKVNIYGTTEAMNSLY  314 (503)
T ss_dssp             TTCCCTTCCEEEECSSCCCHHHHHHHHHHCC---SEEEEEEEETTTEEEEE
T ss_pred             ccccccceEEEEecccccccccccccccccc---ccccccccccccceeee
Confidence            4556789999999999999999999988887   67899999999976554

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=97.82  E-value=9.3e-06  Score=46.63  Aligned_cols=46  Identities=15%  Similarity=0.198  Sum_probs=37.8

Q ss_pred             CCCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCcccceec
Q psy10058          6 QKHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHVL   56 (59)
Q Consensus         6 ~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~   56 (59)
                      ...++.+++.+.++|+++++++..++.+.     ..+++.||+||++.+++
T Consensus       272 ~~~~~~~l~~~~~~G~~~~~~~~~~~~~~-----~~~~~~yG~tE~~~~~~  317 (514)
T d1amua_         272 DPERILSIQTLITAGSATSPSLVNKWKEK-----VTYINAYGPTETTICAT  317 (514)
T ss_dssp             CTTTCCSCSEEEEESSCCCHHHHHHHTTT-----SEEEEEECCGGGSSCSE
T ss_pred             cccccccccEEEEecccCCHHHhhhhccc-----eeEEEeeccccCceeee
Confidence            45678899999999999999987766442     67899999999987654

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=96.94  E-value=0.00074  Score=38.54  Aligned_cols=46  Identities=28%  Similarity=0.351  Sum_probs=39.2

Q ss_pred             CCCCCccceeeecCCCCCHHHHHHHHHHhCCCccceEeccccCccccee
Q psy10058          7 KHDLNSLRVLGSVGEPINPEAWQWYYHSIGGGKCSIVDTFWQTETGGHV   55 (59)
Q Consensus         7 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~   55 (59)
                      ..++++++.+.+||++++++..+++.+.++   ......|+.+|....+
T Consensus       294 ~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  339 (536)
T d1mdba_         294 RDDLSSLQVLQVGGAKFSAEAARRVKAVFG---CTLQQVFGMAEGLVNY  339 (536)
T ss_dssp             CCCCTTCCEEEEESSCCCHHHHTTHHHHTC---SEEEEEEECTTSCEEE
T ss_pred             ccccCcceeEEEeccccccccccchhhccC---ceeeeccccccccccc
Confidence            456788999999999999999999999998   6788888888876544