Psyllid ID: psy10096


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
MIDTYKKMWRYMENKKPSVFVSTYKEGIDRVLEGNYAFLMESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGLVGHIACWRWDDYFWSYNNVHSSGHWRDMEEIQHETQGKKEVQTSQYN
ccHHHHHHHHHHHHcccccccccHHHHHHHHHccccEEEEEccHHHHHHccccccEEcccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
ccHHHHHHHHHHccccccccEccHHHHHHHHccccEEEEEEHHHHHHHHccccccEEEccccccEEEccEEEccccccHEEEHEEEccHHcHHHHHHHHHHHHcccccccccccccccccccccc
MIDTYKKMWRYMENKKPSVFVSTYKEGIDRVLEGNYAFLMESTMLDYIVQRNCnltqigglldskgygiatpmghsglvghiacwrwddyfwsynnvhssghwrdmEEIQhetqgkkevqtsqyn
MIDTYKKmwrymenkkpsvfvsTYKEGIDRVLEGNYAFLMESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGLVGHIACWRWDDYFWSYNNVHSSGHWRDMEEIQHetqgkkevqtsqyn
MIDTYKKMWRYMENKKPSVFVSTYKEGIDRVLEGNYAFLMESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGLVGHIACWRWDDYFWSYNNVHSSGHWRDMEEIQHETQGKKEVQTSQYN
****YKKMWRYMENKKPSVFVSTYKEGIDRVLEGNYAFLMESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGLVGHIACWRWDDYFWSYNNVHSSGHW**********************
*IDTYKKMWRYMENKKPSVFVSTYKEGIDRVLEGNYAFLMESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGLVGHIACWRWDDYFWSYNNVHSSGHWR*********************
MIDTYKKMWRYMENKKPSVFVSTYKEGIDRVLEGNYAFLMESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGLVGHIACWRWDDYFWSYNNVHSSGHWRDMEE*****************
MIDTYKKMWRYMENKKPSVFVSTYKEGIDRVLEGNYAFLMESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGLVGHIACWRWDDYFWSYNNVHSSGHWRDME******************
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MIDTYKKMWRYMENKKPSVFVSTYKEGIDRVLEGNYAFLMESTMLDYIVQRNCNLTQIGGLLDSKGYGIATPMGHSGLVGHIACWRWDDYFWSYNNVHSSGHWRDMEEIQHETQGKKEVQTSQYN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query125 2.2.26 [Sep-21-2011]
Q01812 956 Glutamate receptor ionotr yes N/A 0.568 0.074 0.690 4e-25
Q8BMF5 956 Glutamate receptor ionotr yes N/A 0.568 0.074 0.690 4e-25
Q5IS46 956 Glutamate receptor ionotr yes N/A 0.568 0.074 0.690 5e-25
Q16099 956 Glutamate receptor ionotr yes N/A 0.568 0.074 0.690 5e-25
Q38PU3908 Glutamate receptor ionotr N/A N/A 0.584 0.080 0.630 5e-24
P42260908 Glutamate receptor ionotr no N/A 0.584 0.080 0.630 2e-23
P39087908 Glutamate receptor ionotr no N/A 0.584 0.080 0.630 2e-23
Q13002908 Glutamate receptor ionotr no N/A 0.584 0.080 0.630 2e-23
Q63273 979 Glutamate receptor ionotr no N/A 0.568 0.072 0.647 3e-23
Q61626 979 Glutamate receptor ionotr no N/A 0.568 0.072 0.647 3e-23
>sp|Q01812|GRIK4_RAT Glutamate receptor ionotropic, kainate 4 OS=Rattus norvegicus GN=Grik4 PE=2 SV=1 Back     alignment and function desciption
 Score =  113 bits (282), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 49/71 (69%), Positives = 59/71 (83%)

Query: 4   TYKKMWRYMENKKPSVFVSTYKEGIDRVLEGNYAFLMESTMLDYIVQRNCNLTQIGGLLD 63
           TY++MW YM +K+PSVFV + +EGI RVL  NYAFL+ESTM +Y  QRNCNLTQIGGLLD
Sbjct: 686 TYQRMWNYMYSKQPSVFVKSTEEGIARVLNSNYAFLLESTMNEYYRQRNCNLTQIGGLLD 745

Query: 64  SKGYGIATPMG 74
           +KGYGI  P+G
Sbjct: 746 TKGYGIGMPVG 756




Receptor for glutamate. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. The postsynaptic actions of Glu are mediated by a variety of receptors that are named according to their selective agonists. This receptor binds kainate > quisqualate > glutamate >> AMPA.
Rattus norvegicus (taxid: 10116)
>sp|Q8BMF5|GRIK4_MOUSE Glutamate receptor ionotropic, kainate 4 OS=Mus musculus GN=Grik4 PE=2 SV=2 Back     alignment and function description
>sp|Q5IS46|GRIK4_PANTR Glutamate receptor ionotropic, kainate 4 OS=Pan troglodytes GN=GRIK4 PE=2 SV=1 Back     alignment and function description
>sp|Q16099|GRIK4_HUMAN Glutamate receptor ionotropic, kainate 4 OS=Homo sapiens GN=GRIK4 PE=2 SV=2 Back     alignment and function description
>sp|Q38PU3|GRIK2_MACFA Glutamate receptor ionotropic, kainate 2 OS=Macaca fascicularis GN=GRIK2 PE=2 SV=1 Back     alignment and function description
>sp|P42260|GRIK2_RAT Glutamate receptor ionotropic, kainate 2 OS=Rattus norvegicus GN=Grik2 PE=1 SV=2 Back     alignment and function description
>sp|P39087|GRIK2_MOUSE Glutamate receptor ionotropic, kainate 2 OS=Mus musculus GN=Grik2 PE=1 SV=4 Back     alignment and function description
>sp|Q13002|GRIK2_HUMAN Glutamate receptor ionotropic, kainate 2 OS=Homo sapiens GN=GRIK2 PE=1 SV=1 Back     alignment and function description
>sp|Q63273|GRIK5_RAT Glutamate receptor ionotropic, kainate 5 OS=Rattus norvegicus GN=Grik5 PE=1 SV=1 Back     alignment and function description
>sp|Q61626|GRIK5_MOUSE Glutamate receptor ionotropic, kainate 5 OS=Mus musculus GN=Grik5 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query125
383865951 957 PREDICTED: glutamate receptor, ionotropi 0.592 0.077 0.891 3e-34
380011122 437 PREDICTED: glutamate receptor, ionotropi 0.592 0.169 0.891 4e-34
328779755 437 PREDICTED: glutamate receptor, ionotropi 0.592 0.169 0.891 6e-34
189235359 1027 PREDICTED: similar to CG11155 CG11155-PB 0.592 0.072 0.891 7e-34
270004235 1186 hypothetical protein TcasGA2_TC003560 [T 0.592 0.062 0.891 8e-34
350422738 1031 PREDICTED: glutamate receptor, ionotropi 0.592 0.071 0.891 3e-33
322785497 416 hypothetical protein SINV_08291 [Solenop 0.592 0.177 0.891 3e-33
307174522 631 Glutamate receptor, ionotropic kainate 2 0.592 0.117 0.878 4e-33
345488321 954 PREDICTED: glutamate receptor, ionotropi 0.592 0.077 0.864 9e-33
307195598 575 Glutamate receptor, ionotropic kainate 2 0.592 0.128 0.878 2e-32
>gi|383865951|ref|XP_003708435.1| PREDICTED: glutamate receptor, ionotropic kainate 2-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/74 (89%), Positives = 72/74 (97%)

Query: 1   MIDTYKKMWRYMENKKPSVFVSTYKEGIDRVLEGNYAFLMESTMLDYIVQRNCNLTQIGG 60
           MI+TYKKMWR+MENKKPSVFV TY+EGI RVL+G+YAFLMESTMLDYIVQR+CNLTQIGG
Sbjct: 677 MIETYKKMWRFMENKKPSVFVPTYEEGIQRVLQGDYAFLMESTMLDYIVQRDCNLTQIGG 736

Query: 61  LLDSKGYGIATPMG 74
           LLDSKGYGIATPMG
Sbjct: 737 LLDSKGYGIATPMG 750




Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011122|ref|XP_003689661.1| PREDICTED: glutamate receptor, ionotropic kainate 2-like, partial [Apis florea] Back     alignment and taxonomy information
>gi|328779755|ref|XP_394522.3| PREDICTED: glutamate receptor, ionotropic kainate 2-like, partial [Apis mellifera] Back     alignment and taxonomy information
>gi|189235359|ref|XP_966884.2| PREDICTED: similar to CG11155 CG11155-PB, partial [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270004235|gb|EFA00683.1| hypothetical protein TcasGA2_TC003560 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|350422738|ref|XP_003493267.1| PREDICTED: glutamate receptor, ionotropic kainate 2-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|322785497|gb|EFZ12166.1| hypothetical protein SINV_08291 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307174522|gb|EFN64981.1| Glutamate receptor, ionotropic kainate 2 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|345488321|ref|XP_001605858.2| PREDICTED: glutamate receptor, ionotropic kainate 2-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307195598|gb|EFN77448.1| Glutamate receptor, ionotropic kainate 2 [Harpegnathos saltator] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query125
FB|FBgn0039916 899 CG9935 [Drosophila melanogaste 0.592 0.082 0.783 1.6e-27
FB|FBgn0039927910 CG11155 [Drosophila melanogast 0.584 0.080 0.794 4.5e-27
UNIPROTKB|K7GSQ4260 GRIK5 "Uncharacterized protein 0.584 0.280 0.630 1e-22
UNIPROTKB|F1MCW8751 F1MCW8 "Uncharacterized protei 0.568 0.094 0.690 5.6e-22
UNIPROTKB|F1S9S0 932 GRIK4 "Uncharacterized protein 0.568 0.076 0.690 8.2e-22
UNIPROTKB|F1PHA8 956 GRIK4 "Uncharacterized protein 0.568 0.074 0.690 8.5e-22
UNIPROTKB|Q16099 956 GRIK4 "Glutamate receptor iono 0.568 0.074 0.690 8.5e-22
MGI|MGI:95817 956 Grik4 "glutamate receptor, ion 0.568 0.074 0.690 8.5e-22
RGD|2734 956 Grik4 "glutamate receptor, ion 0.568 0.074 0.690 8.5e-22
UNIPROTKB|Q01812 956 Grik4 "Glutamate receptor iono 0.568 0.074 0.690 8.5e-22
FB|FBgn0039916 CG9935 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 319 (117.4 bits), Expect = 1.6e-27, P = 1.6e-27
 Identities = 58/74 (78%), Positives = 68/74 (91%)

Query:     1 MIDTYKKMWRYMENKKPSVFVSTYKEGIDRVLEGNYAFLMESTMLDYIVQRNCNLTQIGG 60
             +I+TYKK+WR M+NKKPS F +TY++GI RV +GNYAFLMESTMLDYIVQR+CNLTQIGG
Sbjct:   669 VIETYKKIWRSMDNKKPSAFTTTYEDGIKRVNQGNYAFLMESTMLDYIVQRDCNLTQIGG 728

Query:    61 LLDSKGYGIATPMG 74
             LLD+KGYGIATP G
Sbjct:   729 LLDTKGYGIATPKG 742




GO:0015277 "kainate selective glutamate receptor activity" evidence=ISS
GO:0006811 "ion transport" evidence=IEA
GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISS
GO:0060025 "regulation of synaptic activity" evidence=ISS
FB|FBgn0039927 CG11155 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|K7GSQ4 GRIK5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MCW8 F1MCW8 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S9S0 GRIK4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PHA8 GRIK4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q16099 GRIK4 "Glutamate receptor ionotropic, kainate 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:95817 Grik4 "glutamate receptor, ionotropic, kainate 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2734 Grik4 "glutamate receptor, ionotropic, kainate 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q01812 Grik4 "Glutamate receptor ionotropic, kainate 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8BMF5GRIK4_MOUSENo assigned EC number0.69010.5680.0742yesN/A
Q5IS46GRIK4_PANTRNo assigned EC number0.69010.5680.0742yesN/A
Q01812GRIK4_RATNo assigned EC number0.69010.5680.0742yesN/A
Q16099GRIK4_HUMANNo assigned EC number0.69010.5680.0742yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query125
smart00079133 smart00079, PBPe, Eukaryotic homologues of bacteri 4e-31
pfam00060268 pfam00060, Lig_chan, Ligand-gated ion channel 1e-28
>gnl|CDD|197504 smart00079, PBPe, Eukaryotic homologues of bacterial periplasmic substrate binding proteins Back     alignment and domain information
 Score =  106 bits (268), Expect = 4e-31
 Identities = 40/81 (49%), Positives = 48/81 (59%), Gaps = 3/81 (3%)

Query: 2   IDTYKKMWRYMENKKPSVFVSTYKEGIDRVLEGNYAFLMESTMLDYIVQRNCNLTQIGGL 61
              Y +MW YM  K P VFV +Y EG+ RV   NYAF+MES  LDY + RNC+L  +G  
Sbjct: 33  NPEYSRMWPYM--KSPEVFVKSYAEGVQRVRVSNYAFIMESPYLDYELSRNCDLMTVGEE 90

Query: 62  LDSKGYGIATPMGHSGLVGHI 82
              KGYGIA P G S L   +
Sbjct: 91  FGRKGYGIAFPKG-SPLRDDL 110


Prokaryotic homologues are represented by a separate alignment: PBPb. Length = 133

>gnl|CDD|215685 pfam00060, Lig_chan, Ligand-gated ion channel Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 125
KOG1053|consensus 1258 99.91
KOG1054|consensus897 99.78
KOG4440|consensus 993 99.75
smart00079134 PBPe Eukaryotic homologues of bacterial periplasmi 99.3
KOG1052|consensus656 99.08
PRK10797302 glutamate and aspartate transporter subunit; Provi 97.44
PRK09495247 glnH glutamine ABC transporter periplasmic protein 97.22
PRK11260266 cystine transporter subunit; Provisional 96.96
TIGR01096250 3A0103s03R lysine-arginine-ornithine-binding perip 96.95
PRK11917259 bifunctional adhesin/ABC transporter aspartate/glu 96.91
PF00497225 SBP_bac_3: Bacterial extracellular solute-binding 96.86
PRK15007243 putative ABC transporter arginine-biding protein; 95.88
PRK09959 1197 hybrid sensory histidine kinase in two-component r 95.73
COG0834275 HisJ ABC-type amino acid transport/signal transduc 95.28
cd00134218 PBPb Bacterial periplasmic transport systems use m 95.26
smart00062219 PBPb Bacterial periplasmic substrate-binding prote 95.19
PRK10859 482 membrane-bound lytic transglycosylase F; Provision 95.05
TIGR03871232 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associa 94.32
PRK09959 1197 hybrid sensory histidine kinase in two-component r 94.14
TIGR02995275 ectoine_ehuB ectoine/hydroxyectoine ABC transporte 94.13
PRK15010260 ABC transporter lysine/arginine/ornithine binding 94.11
TIGR03870246 ABC_MoxJ methanol oxidation system protein MoxJ. T 93.35
TIGR01098254 3A0109s03R phosphate/phosphite/phosphonate ABC tra 92.67
TIGR02285268 conserved hypothetical protein. Members of this fa 92.66
PRK15437259 histidine ABC transporter substrate-binding protei 91.67
>KOG1053|consensus Back     alignment and domain information
Probab=99.91  E-value=1.9e-25  Score=196.23  Aligned_cols=107  Identities=27%  Similarity=0.512  Sum_probs=95.4

Q ss_pred             hHHHHHHHHHHhcCCCccccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcC--CceeEec--cccCccceEEEecCCCCC
Q psy10096          3 DTYKKMWRYMENKKPSVFVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRN--CNLTQIG--GLLDSKGYGIATPMGHSG   77 (125)
Q Consensus         3 ~~y~~m~~~M~~~~~~~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~--C~L~~vg--~~f~~~gYgialp~gSpl   77 (125)
                      ..|++||+||.+++    +.++++||+.||+|+ +|||||.++|+|.+.+|  |.|++||  +.|...|||||+||||||
T Consensus       705 ~Nyp~MHeYM~kyN----q~~v~dal~sLK~gKLDAFIyDaAVLnY~agkDegCKLvTIGsgKvFAttGYGIal~k~Spw  780 (1258)
T KOG1053|consen  705 SNYPEMHEYMVKYN----QPGVEDALESLKNGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALPKNSPW  780 (1258)
T ss_pred             hccHHHHHHHHHhc----cCchHHHHHHHhcccchhHHHHHHHHHHhhccCCCceEEEecCCceeeecceeeecCCCCcc
Confidence            46899999999987    799999999999999 99999999999999665  9999999  999999999999999999


Q ss_pred             cc-ccccccccccccccccCcCCCCccccchh-----hhhhhccccccccccCC
Q psy10096         78 LV-GHIACWRWDDYFWSYNNVHSSGHWRDMEE-----IQHETQGKKEVQTSQYN  125 (125)
Q Consensus        78 ~~-g~l~~l~~~~kw~~~~c~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  125 (125)
                      ++ -++..|+          ....|+||+||.     |||  ++|||||||||.
T Consensus       781 kr~IdlallQ----------y~gdGeme~Le~~Wltgic~--n~k~evmSsqLd  822 (1258)
T KOG1053|consen  781 KRQIDLALLQ----------YLGDGEMEMLETLWLTGICH--NSKNEVMSSQLD  822 (1258)
T ss_pred             hhhHHHHHHH----------HhccchHHHHHHHHhhcccc--cchhhhhhcccC
Confidence            93 4555666          667777887776     489  999999999983



>KOG1054|consensus Back     alignment and domain information
>KOG4440|consensus Back     alignment and domain information
>smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins Back     alignment and domain information
>KOG1052|consensus Back     alignment and domain information
>PRK10797 glutamate and aspartate transporter subunit; Provisional Back     alignment and domain information
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed Back     alignment and domain information
>PRK11260 cystine transporter subunit; Provisional Back     alignment and domain information
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein Back     alignment and domain information
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed Back     alignment and domain information
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane Back     alignment and domain information
>PRK15007 putative ABC transporter arginine-biding protein; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms] Back     alignment and domain information
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions Back     alignment and domain information
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins Back     alignment and domain information
>PRK10859 membrane-bound lytic transglycosylase F; Provisional Back     alignment and domain information
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein Back     alignment and domain information
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional Back     alignment and domain information
>TIGR03870 ABC_MoxJ methanol oxidation system protein MoxJ Back     alignment and domain information
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein Back     alignment and domain information
>TIGR02285 conserved hypothetical protein Back     alignment and domain information
>PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query125
1yae_A312 Structure Of The Kainate Receptor Subunit Glur6 Ago 2e-24
3qxm_A258 Crystal Structure Of Human Gluk2 Ligand-Binding Cor 2e-24
3g3g_A259 Crystal Structure Of The Glur6 Ligand Binding Domai 3e-24
1s50_A259 X-Ray Structure Of The Glur6 Ligand Binding Core (S 3e-24
2i0b_A259 Crystal Structure Of The Glur6 Ligand Binding Core 3e-24
2xxw_A261 Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Di 3e-24
3g3k_A259 Crystal Structure Of The Glur6 Ligand Binding Domai 3e-24
3g3h_A259 Crystal Structure Of The Glur6 Ligand Binding Domai 3e-24
2xxr_A261 Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lb 3e-24
3g3j_A259 Crystal Structure Of The Glur6 Ligand Binding Domai 3e-24
3g3i_A259 Crystal Structure Of The Glur6 Ligand Binding Domai 3e-24
2i0c_A259 Crystal Structure Of The Glur6 Ligand Binding Core 3e-24
2xxu_A261 Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Di 2e-23
3u92_A257 Crystal Structure Of The Gluk3 Ligand Binding Domai 4e-23
3s9e_A258 Crystal Structure Of The Kainate Receptor Gluk3 Lig 5e-23
2wky_A258 Crystal Structure Of The Ligand-Binding Core Of Glu 2e-22
1txf_A258 Crystal Structure Of The Glur5 Ligand Binding Core 2e-22
2f34_A258 Crystal Structure Of The Glur5 Ligand Binding Core 2e-22
1ycj_A257 Crystal Structure Of The Kainate Receptor Glur5 Lig 2e-22
2zns_A256 Crystal Structure Of The Ligand-Binding Core Of The 5e-22
1m5d_A263 X-ray Structure Of The Glur2 Ligand Binding Core (s 1e-18
1lbb_A263 Crystal Structure Of The Glur2 Ligand Binding Domai 2e-18
3rnn_A292 Crystal Structure Of Iglur2 Ligand Binding Domain W 3e-18
3kg2_A823 Ampa Subtype Ionotropic Glutamate Receptor In Compl 3e-18
3rn8_A280 Crystal Structure Of Iglur2 Ligand Binding Domain A 3e-18
3b6t_A263 Crystal Structure Of The Glur2 Ligand Binding Core 4e-18
3fat_A260 X-Ray Structure Of Iglur4 Flip Ligand-Binding Core 4e-18
3o28_A263 Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Gl 4e-18
2xhd_A263 Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridiny 4e-18
1lbc_A263 Crystal Structure Of Glur2 Ligand Binding Core (S1s 4e-18
3dp6_A279 Crystal Structure Of The Binding Domain Of The Ampa 4e-18
1mqh_A263 Crystal Structure Of The Glur2 Ligand Binding Core 4e-18
1p1n_A263 Glur2 Ligand Binding Core (S1s2j) Mutant L650t In C 4e-18
3o29_A263 Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Gl 4e-18
1gr2_A279 Structure Of A Glutamate Receptor Ligand Binding Co 4e-18
1p1w_A263 Crystal Structure Of The Glur2 Ligand-Binding Core 4e-18
3b6w_C263 Crystal Structure Of The Glur2 Ligand Binding Core 4e-18
1fw0_A263 Crystal Structure Of The Glur2 Ligand Binding Core 4e-18
3ijo_B258 Crystal Structure Of The Ampa Subunit Glur2 Bound T 4e-18
2uxa_A261 Crystal Structure Of The Glur2-Flip Ligand Binding 4e-18
3tdj_A263 Crystal Structure Of The Glua2 Ligand-Binding Domai 4e-18
2xx7_A291 Crystal Structure Of 1-(4-(1-Pyrrolidinylcarbonyl)p 4e-18
3r7x_A263 Crystal Structure Analysis Of A Quinazolinedione Su 4e-18
2anj_A263 Crystal Structure Of The Glur2 Ligand Binding Core 4e-18
3h03_A258 Crystal Structure Of The Binding Domain Of The Ampa 4e-18
1mqd_A261 X-Ray Structure Of The Glur2 Ligand-Binding Core (S 4e-18
3pd8_A261 X-Ray Structure Of The Ligand-Binding Core Of Glua2 4e-18
2gfe_A262 Crystal Structure Of The Glur2 A476e S673d Ligand B 4e-18
1lb8_A263 Crystal Structure Of The Non-Desensitizing Glur2 Li 4e-18
3t9x_B258 Glutamate Bound To A Double Cysteine Mutant (V484cE 4e-18
3pd9_A260 X-Ray Structure Of The Ligand-Binding Core Of Glua2 4e-18
3t93_B258 Glutamate Bound To A Double Cysteine Mutant (A452cS 5e-18
3dp4_A278 Crystal Structure Of The Binding Domain Of The Ampa 1e-17
4f2o_A258 Quisqualate Bound To The D655a Mutant Of The Ligand 1e-17
3m3f_A258 Pepa Bound To The Ligand Binding Domain Of Glua3 (F 1e-17
3lsw_A258 Aniracetam Bound To The Ligand Binding Domain Of Gl 1e-17
4f22_A258 Kainate Bound To The K660a Mutant Of The Ligand Bin 1e-17
3kei_A257 Crystal Structure Of The Glua4 Ligand-Binding Domai 1e-17
3en3_A257 Crystal Structure Of The Glur4 Ligand-Binding Domai 1e-17
2i3w_A259 Measurement Of Conformational Changes Accompanying 1e-17
2i3v_A259 Measurement Of Conformational Changes Accompanying 4e-17
2v3u_A265 Structure Of The Ligand-binding Core Of The Ionotro 1e-04
2v3t_A265 Structure Of The Ligand-Binding Core Of The Ionotro 5e-04
>pdb|1YAE|A Chain A, Structure Of The Kainate Receptor Subunit Glur6 Agonist Binding Domain Complexed With Domoic Acid Length = 312 Back     alignment and structure

Iteration: 1

Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 46/73 (63%), Positives = 59/73 (80%) Query: 2 IDTYKKMWRYMENKKPSVFVSTYKEGIDRVLEGNYAFLMESTMLDYIVQRNCNLTQIGGL 61 I TY KMW +M +++ SV V + +EGI RVL +YAFLMEST ++++ QRNCNLTQIGGL Sbjct: 186 ISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGL 245 Query: 62 LDSKGYGIATPMG 74 +DSKGYG+ TPMG Sbjct: 246 IDSKGYGVGTPMG 258
>pdb|3QXM|A Chain A, Crystal Structure Of Human Gluk2 Ligand-Binding Core In Complex With Novel Marine-Derived Toxins, Neodysiherbaine A Length = 258 Back     alignment and structure
>pdb|3G3G|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer K665r Mutant With Glutamate And Nacl At 1.3 Angstrom Resolution Length = 259 Back     alignment and structure
>pdb|1S50|A Chain A, X-Ray Structure Of The Glur6 Ligand Binding Core (S1s2a) In Complex With Glutamate At 1.65 A Resolution Length = 259 Back     alignment and structure
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq Mutant Dimer At 1.96 Angstroms Resolution Length = 259 Back     alignment and structure
>pdb|2XXW|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In Complex With Glutamate Length = 261 Back     alignment and structure
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer I442h K494e K665r I749l Q753k E757q Mutant With Glutamate And Nacl At 1.24 Angstrom Resolution Length = 259 Back     alignment and structure
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5 Angstrom Resolution Length = 259 Back     alignment and structure
>pdb|2XXR|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer In Complex With Glutamate Length = 261 Back     alignment and structure
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer I442h K494e K665r I749l Q753k Mutant With Glutamate And Nacl At 1.32 Angstrom Resolution Length = 259 Back     alignment and structure
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer I442h K494e I749l Q753k Mutant With Glutamate And Nacl At 1.37 Angstrom Resolution Length = 259 Back     alignment and structure
>pdb|2I0C|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Dimer Crosslinked By Disulfide Bonds Between Y490c And L752c At 2.25 Angstroms Resolution Length = 259 Back     alignment and structure
>pdb|2XXU|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In Complex With Glutamate Length = 261 Back     alignment and structure
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain Complex With Kainate And Zinc: P2221 Form Length = 257 Back     alignment and structure
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand Binding Domain In Complex With (S)-Glutamate Length = 258 Back     alignment and structure
>pdb|2WKY|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Glur5 In Complex With The Agonist 4-Ahcp Length = 258 Back     alignment and structure
>pdb|1TXF|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core In Complex With Glutamate At 2.1 Angstrom Resolution Length = 258 Back     alignment and structure
>pdb|2F34|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer With Ubp310 At 1.74 Angstroms Resolution Length = 258 Back     alignment and structure
>pdb|1YCJ|A Chain A, Crystal Structure Of The Kainate Receptor Glur5 Ligand- Binding Core In Complex With (S)-Glutamate Length = 257 Back     alignment and structure
>pdb|2ZNS|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human Ionotropic Glutamate Receptor, Glur5, In Complex With Glutamate Length = 256 Back     alignment and structure
>pdb|1M5D|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j- Y702f) In Complex With Br-hibo At 1.73 A Resolution Length = 263 Back     alignment and structure
>pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Domain Mutant (s1s2j-n754d) In Complex With Kainate At 2.1 A Resolution Length = 263 Back     alignment and structure
>pdb|3RNN|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain With Symmetric Sulfonamide Containing Potentiator Length = 292 Back     alignment and structure
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With Competitive Antagonist Zk 200775 Length = 823 Back     alignment and structure
>pdb|3RN8|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain And Symmetrical Carboxyl Containing Potentiator Length = 280 Back     alignment and structure
>pdb|3B6T|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j) T686a Mutant In Complex With Quisqualate At 2.1 Resolution Length = 263 Back     alignment and structure
>pdb|3FAT|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2) In Complex With (S)-Ampa At 1.90a Resolution Length = 260 Back     alignment and structure
>pdb|3O28|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate Receptor In Complex With An Allosteric Modulator Length = 263 Back     alignment and structure
>pdb|2XHD|A Chain A, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3- Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex With The Ligand Binding Domain Of The Human Glua2 Receptor Length = 263 Back     alignment and structure
>pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j- N775s) In Complex With Cyclothiazide (Ctz) As Well As Glutamate At 1.8 A Resolution Length = 263 Back     alignment and structure
>pdb|3DP6|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa Subunit Glur2 Bound To Glutamate Length = 279 Back     alignment and structure
>pdb|1MQH|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j) In Complex With Bromo-Willardiine At 1.8 Angstroms Resolution Length = 263 Back     alignment and structure
>pdb|1P1N|A Chain A, Glur2 Ligand Binding Core (S1s2j) Mutant L650t In Complex With Kainate Length = 263 Back     alignment and structure
>pdb|3O29|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate Receptor In Complex With An Allosteric Modulator Length = 263 Back     alignment and structure
>pdb|1GR2|A Chain A, Structure Of A Glutamate Receptor Ligand Binding Core (Glur2) Complexed With Kainate Length = 279 Back     alignment and structure
>pdb|1P1W|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j) With The L483y And L650t Mutations And In Complex With Ampa Length = 263 Back     alignment and structure
>pdb|3B6W|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j) T686s Mutant In Complex With Glutamate At 1.7 Resolution Length = 263 Back     alignment and structure
>pdb|1FW0|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j) In Complex With Kainate At 2.0 A Resolution Length = 263 Back     alignment and structure
>pdb|3IJO|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The Allosteric Modulator, Althiazide Length = 258 Back     alignment and structure
>pdb|2UXA|A Chain A, Crystal Structure Of The Glur2-Flip Ligand Binding Domain, RG UNEDITED. Length = 261 Back     alignment and structure
>pdb|3TDJ|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain (S1s2j-L483y- N754s) In Complex With Glutamate And Bpam-97 At 1.95 A Resolution Length = 263 Back     alignment and structure
>pdb|2XX7|A Chain A, Crystal Structure Of 1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3- (Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In Complex With The Ligand Binding Domain Of The Rat Glua2 Receptor And Glutamate At 2.2a Resolution. Length = 291 Back     alignment and structure
>pdb|3R7X|A Chain A, Crystal Structure Analysis Of A Quinazolinedione Sulfonamide Bound To Human Glur2: A Novel Class Of Competitive Ampa Receptor Antagonists With Oral Activity Length = 263 Back     alignment and structure
>pdb|2ANJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j- Y450w) Mutant In Complex With The Partial Agonist Kainic Acid At 2.1 A Resolution Length = 263 Back     alignment and structure
>pdb|3H03|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa Subunit Glur2 Bound To Ubp277 Length = 258 Back     alignment and structure
>pdb|1MQD|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j) In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution. Crystallization In The Presence Of Lithium Sulfate. Length = 261 Back     alignment and structure
>pdb|3PD8|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In Complex With (S)-7-Hpca At 2.5 A Resolution Length = 261 Back     alignment and structure
>pdb|2GFE|A Chain A, Crystal Structure Of The Glur2 A476e S673d Ligand Binding Core Mutant At 1.54 Angstroms Resolution Length = 262 Back     alignment and structure
>pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand Binding Core Mutant (S1s2j-L483y) In Complex With Ampa At 2.3 Resolution Length = 263 Back     alignment and structure
>pdb|3T9X|B Chain B, Glutamate Bound To A Double Cysteine Mutant (V484cE657C) OF THE Ligand Binding Domain Of Glua2 Length = 258 Back     alignment and structure
>pdb|3PD9|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In Complex With (R)-5-Hpca At 2.1 A Resolution Length = 260 Back     alignment and structure
>pdb|3T93|B Chain B, Glutamate Bound To A Double Cysteine Mutant (A452cS652C) OF THE Ligand Binding Domain Of Glua2 Length = 258 Back     alignment and structure
>pdb|3DP4|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa Subunit Glur3 Bound To Ampa Length = 278 Back     alignment and structure
>pdb|4F2O|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand Binding Domain Of Glua3 Length = 258 Back     alignment and structure
>pdb|3M3F|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua3 (Flop Form) Length = 258 Back     alignment and structure
>pdb|3LSW|A Chain A, Aniracetam Bound To The Ligand Binding Domain Of Glua3 Length = 258 Back     alignment and structure
>pdb|4F22|A Chain A, Kainate Bound To The K660a Mutant Of The Ligand Binding Domain Of Glua3 Length = 258 Back     alignment and structure
>pdb|3KEI|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v Mutant In Complex With Glutamate Length = 257 Back     alignment and structure
>pdb|3EN3|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In Complex With Kainate Length = 257 Back     alignment and structure
>pdb|2I3W|A Chain A, Measurement Of Conformational Changes Accompanying Desensitization In An Ionotropic Glutamate Receptor: Structure Of S729c Mutant Length = 259 Back     alignment and structure
>pdb|2I3V|A Chain A, Measurement Of Conformational Changes Accompanying Desensitization In An Ionotropic Glutamate Receptor: Structure Of G725c Mutant Length = 259 Back     alignment and structure
>pdb|2V3U|A Chain A, Structure Of The Ligand-binding Core Of The Ionotropic Glutamate Receptor-like Glurdelta2 In Complex With D- Serine Length = 265 Back     alignment and structure
>pdb|2V3T|A Chain A, Structure Of The Ligand-Binding Core Of The Ionotropic Glutamate Receptor-Like Glurdelta2 In The Apo Form Length = 265 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query125
3g3k_A259 Glutamate receptor, ionotropic kainate 2; membrane 5e-25
3kg2_A823 Glutamate receptor 2; ION channel, membrane protei 1e-22
1yae_A312 Glutamate receptor, ionotropic kainate 2; kainate 6e-22
1mqi_A263 Glutamate receptor 2; GLUR2, ligand binding core, 7e-20
2v3u_A265 Glutamate receptor delta-2 subunit; postsynaptic m 1e-19
1pb7_A292 N-methyl-D-aspartate receptor subunit 1; ligand bi 5e-10
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Length = 259 Back     alignment and structure
 Score = 94.3 bits (234), Expect = 5e-25
 Identities = 46/74 (62%), Positives = 59/74 (79%)

Query: 1   MIDTYKKMWRYMENKKPSVFVSTYKEGIDRVLEGNYAFLMESTMLDYIVQRNCNLTQIGG 60
            I TY KMW +M +++ SV V + +EGI RVL  +YAFLMEST ++++ QRNCNLTQIGG
Sbjct: 151 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 210

Query: 61  LLDSKGYGIATPMG 74
           L+DSKGYG+ TPMG
Sbjct: 211 LIDSKGYGVGTPMG 224


>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Length = 823 Back     alignment and structure
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 Length = 312 Back     alignment and structure
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Length = 263 Back     alignment and structure
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A Length = 265 Back     alignment and structure
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Length = 292 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query125
3kg2_A823 Glutamate receptor 2; ION channel, membrane protei 99.47
1pb7_A292 N-methyl-D-aspartate receptor subunit 1; ligand bi 99.26
3g3k_A259 Glutamate receptor, ionotropic kainate 2; membrane 99.15
1yae_A312 Glutamate receptor, ionotropic kainate 2; kainate 99.1
2rc8_A294 Glutamate [NMDA] receptor subunit 3A; membrane pro 99.05
2a5s_A284 N-methyl-D-aspartate receptor nmdar2A subunit, NMD 98.98
2v3u_A265 Glutamate receptor delta-2 subunit; postsynaptic m 98.85
1mqi_A263 Glutamate receptor 2; GLUR2, ligand binding core, 98.81
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 97.99
4f3p_A249 Glutamine-binding periplasmic protein; ssgcid, str 97.96
3i6v_A232 Periplasmic His/Glu/Gln/Arg/opine family-binding; 97.87
3k4u_A245 Binding component of ABC transporter; structural g 97.85
3del_B242 Arginine binding protein; alpha and beta protein ( 97.82
3kzg_A237 Arginine 3RD transport system periplasmic binding 97.76
2pyy_A228 Ionotropic glutamate receptor bacterial homologue; 97.76
4gvo_A243 LMO2349 protein; structural genomics, IDP05245, L- 97.71
4h5g_A243 Amino acid ABC superfamily ATP binding cassette tr 97.68
3hv1_A268 Polar amino acid ABC uptake transporter substrate 97.65
4dz1_A259 DALS D-alanine transporter; D-alanine binding, per 97.56
3qax_A268 Probable ABC transporter arginine-binding protein; 97.55
3h7m_A234 Sensor protein; histidine kinase sensor domain, ki 97.53
1wdn_A226 GLNBP, glutamine binding protein; closed form, com 97.49
2y7i_A229 STM4351; arginine-binding protein; HET: ARG; 1.90A 97.41
4eq9_A246 ABC transporter substrate-binding protein-amino A 97.39
3kbr_A239 Cyclohexadienyl dehydratase; pseudomonas aeruginos 97.35
3tql_A227 Arginine-binding protein; transport and binding pr 97.33
1lst_A239 Lysine, arginine, ornithine-binding protein; amino 97.27
2vha_A287 Periplasmic binding transport protein; periplasmic 97.26
4i62_A269 Amino acid ABC transporter, periplasmic amino ACI 97.24
1xt8_A292 Putative amino-acid transporter periplasmic solut 97.22
2yjp_A291 Putative ABC transporter, periplasmic binding Pro 97.19
3mpk_A267 Virulence sensor protein BVGS; venus flytrap, sens 97.09
2pvu_A272 ARTJ; basic amino acid binding protein, ABC transp 96.88
2yln_A283 Putative ABC transporter, periplasmic binding Pro 96.86
2iee_A271 ORF2, probable ABC transporter extracellular-bindi 96.63
2q88_A257 EHUB, putative ABC transporter amino acid-binding 95.88
2v25_A259 Major cell-binding factor; antigen, adhesin, aspar 95.71
3n5l_A310 Binding protein component of ABC phosphonate TRAN; 88.3
3p7i_A321 PHND, subunit of alkylphosphonate ABC transporter; 88.12
2ozz_A231 Hypothetical protein YHFZ; alpha-beta structure, s 80.62
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Back     alignment and structure
Probab=99.47  E-value=7.5e-14  Score=119.69  Aligned_cols=95  Identities=48%  Similarity=0.832  Sum_probs=86.0

Q ss_pred             chHHHHHHHHHHhcCCCccccCHHHHHHHHh--cCCcEEEeehhhhHHHHhcC-CceeEeccccCccceEEEecCCCCCc
Q psy10096          2 IDTYKKMWRYMENKKPSVFVSTYKEGIDRVL--EGNYAFLMESTMLDYIVQRN-CNLTQIGGLLDSKGYGIATPMGHSGL   78 (125)
Q Consensus         2 ~~~y~~m~~~M~~~~~~~~v~~~~eGv~~vr--~g~~AfI~d~~~l~Y~~~~~-C~L~~vg~~f~~~gYgialp~gSpl~   78 (125)
                      .+.|++||++|...++.+++++.+||+++++  .|.+||+.|.+.++|+..++ |+|.++|+.|...+|||++|+||||+
T Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~y~~~~~~c~l~~v~~~~~~~~~~~~~~k~spl~  734 (823)
T 3kg2_A          655 IAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLG  734 (823)
T ss_dssp             CHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTTTSEEEEEEHHHHHHHHTSTTCCEEEESCCSSCEEECCEEETTCSSH
T ss_pred             chHHHHHHHHHHhcCCccccCCHHHHHHHHhccCCceEEEechHHHHHHHhcCCCceEEccccccccceeEeecCCChHH
Confidence            4578999999999888889999999999997  45699999999999998776 99999999999999999999999999


Q ss_pred             ------------ccccccccccccccc--ccCcC
Q psy10096         79 ------------VGHIACWRWDDYFWS--YNNVH   98 (125)
Q Consensus        79 ------------~g~l~~l~~~~kw~~--~~c~~   98 (125)
                                  +|.+++|+  ++||.  ..|..
T Consensus       735 ~~~~~~il~l~e~G~~~~~~--~~w~~~~~~c~~  766 (823)
T 3kg2_A          735 TPVNLAVLKLSEQGLLDKLK--NKWWYDKGECGA  766 (823)
T ss_dssp             HHHHHHHHHHHHTTHHHHHH--HHHHTTSCSCSS
T ss_pred             HHHHHHHHHHHhCCcHHHHH--HhhCcCCCCCCC
Confidence                        69999999  99994  57876



>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Back     alignment and structure
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Back     alignment and structure
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 Back     alignment and structure
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A Back     alignment and structure
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* Back     alignment and structure
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A Back     alignment and structure
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Back     alignment and structure
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Back     alignment and structure
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0 Back     alignment and structure
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0 Back     alignment and structure
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0 Back     alignment and structure
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0 Back     alignment and structure
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Back     alignment and structure
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A Back     alignment and structure
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A* Back     alignment and structure
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Back     alignment and structure
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Back     alignment and structure
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* Back     alignment and structure
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0 Back     alignment and structure
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Back     alignment and structure
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} Back     alignment and structure
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} Back     alignment and structure
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Back     alignment and structure
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0 Back     alignment and structure
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Back     alignment and structure
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Back     alignment and structure
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae} Back     alignment and structure
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 Back     alignment and structure
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Back     alignment and structure
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Back     alignment and structure
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Back     alignment and structure
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Back     alignment and structure
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Back     alignment and structure
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Back     alignment and structure
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} Back     alignment and structure
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa} Back     alignment and structure
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A Back     alignment and structure
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query125
d2a5sa1277 N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt 99.44
d1pb7a_289 N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt 99.17
d1mqia_260 Glutamate receptor ligand binding core {Rat (Rattu 98.89
d2f34a1246 Glutamate receptor ligand binding core {Rat (Rattu 98.46
d1ii5a_226 Glutamate receptor ligand binding core {Synechocys 98.11
d1wdna_223 Glutamine-binding protein {Escherichia coli [TaxId 97.98
d1xt8a1248 Putative amino-acid transporter CjaA {Campylobacte 97.15
d1lsta_238 Lysine-,arginine-,ornithine-binding (LAO) protein 96.02
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: N-methyl-D-aspartate receptor subunit 1
species: Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]
Probab=99.44  E-value=4.4e-14  Score=106.43  Aligned_cols=86  Identities=23%  Similarity=0.420  Sum_probs=74.4

Q ss_pred             HHHHHHHHhcCCCccccCHHHHHHHHhcCC-cEEEeehhhhHHHHhcC--CceeEecc--ccCccceEEEecCCCCCc--
Q psy10096          6 KKMWRYMENKKPSVFVSTYKEGIDRVLEGN-YAFLMESTMLDYIVQRN--CNLTQIGG--LLDSKGYGIATPMGHSGL--   78 (125)
Q Consensus         6 ~~m~~~M~~~~~~~~v~~~~eGv~~vr~g~-~AfI~d~~~l~Y~~~~~--C~L~~vg~--~f~~~gYgialp~gSpl~--   78 (125)
                      +.++.+|....    +.+..+|+++|++|+ +|||+|.+++.|++.++  |++..++.  .|...+||||+|+||||+  
T Consensus       175 ~~~~~~~~~~~----~~~~~~~~~~l~~G~~Da~i~d~~~~~y~~~~~~~~~l~~~~~~~~~~~~~ygia~~k~s~l~~~  250 (277)
T d2a5sa1         175 PYMHQYMTRFN----QRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSPWKRQ  250 (277)
T ss_dssp             HHHHHHHGGGC----CSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCTTSCEEEEECCCGGGCEEECCEEETTCTTHHH
T ss_pred             hhhcceEEEec----CCCHHHHHHHHHcCCcceecccHHHHHHHHhhCCCCcEEEecCCCCcCcceEEEEEeCChHHHHH
Confidence            45566665543    688999999999999 89999999999998653  99998864  688999999999999998  


Q ss_pred             ----------cccccccccccccccccCc
Q psy10096         79 ----------VGHIACWRWDDYFWSYNNV   97 (125)
Q Consensus        79 ----------~g~l~~l~~~~kw~~~~c~   97 (125)
                                +|.++.|.  +|||.+.|.
T Consensus       251 in~al~~l~~~G~~~~L~--~KW~~g~~~  277 (277)
T d2a5sa1         251 IDLALLQFVGDGEMEELE--TLWLTGICH  277 (277)
T ss_dssp             HHHHHHHHHHHTHHHHHH--HHHTCCCCC
T ss_pred             HHHHHHHHHHCCHHHHHH--hhhcCCCCC
Confidence                      69999999  999999994



>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]} Back     information, alignment and structure
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]} Back     information, alignment and structure
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]} Back     information, alignment and structure
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure