Psyllid ID: psy10144

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MGPNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQIERKGERERTRDKEKQKEMV
Secondary Structure (PSIPRED)
ccccEEEEEEEEEEEccHHHHEEEEEEHcccccccccEEEEHHHHHHHHHHHHcccccccccccccccEEEEccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccEHHHHHHHHHHHHHHHHHHHccccccccEEEEcEEEEEEHHHHHccccHccccccccEHEEccccccccccHHHHHHcc
Coil and Loop (DISEMBL)
mgpnkrgltgrlsyLPTILIVIISWVSFWmdvdsvpgrttlGVTTLLAVSsqssgyaniasqtepttqierkgerertrDKEKQKEMV
Flexible Loop (DISEMBL)
mgpnkrgltgrlsYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVssqssgyaniasqtepttqierkgerertrdkekqkemv
Low Complexity Region (SEG)
MGPNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQIERKGERERTRDKEKQKEMV
Disordered region (IsUnstruct)
********TGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAV***************************************
Disordered Region (DISOPRED)
***NKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG*ANIASQTEPTTQIERKGERERTR*********
Disordered Region (DISEMBL)
********TGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQS***********************************
Disordered Region (DISPRO)
*****RGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYA*IASQTEPTT**E******************
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGPNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQIERKGERERTRDKEKQKEMV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	88	2.2.26 [Sep-21-2011]
Q09453	473	Glycine receptor subunit	no	N/A	0.488	0.090	0.651	2e-11
Q7TNC8	452	Glycine receptor subunit	yes	N/A	0.477	0.092	0.571	1e-10
P22771	452	Glycine receptor subunit	yes	N/A	0.477	0.092	0.571	1e-10
P24524	464	Glycine receptor subunit	no	N/A	0.477	0.090	0.571	1e-10
P23416	452	Glycine receptor subunit	yes	N/A	0.477	0.092	0.571	1e-10
Q91XP5	464	Glycine receptor subunit	no	N/A	0.477	0.090	0.571	1e-10
O75311	464	Glycine receptor subunit	no	N/A	0.477	0.090	0.571	2e-10
O93430	444	Glycine receptor subunit	no	N/A	0.477	0.094	0.571	2e-10
P07727	457	Glycine receptor subunit	no	N/A	0.477	0.091	0.547	3e-10
Q64018	457	Glycine receptor subunit	no	N/A	0.477	0.091	0.547	3e-10

>sp|Q09453|GLRB4_CAEEL Glycine receptor subunit beta-type 4 OS=Caenorhabditis elegans GN=ggr-1 PE=3 SV=2

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 37/43 (86%)

Query: 13  SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
           SY+PT LIVIISW SFW+DV++VPGR +L +TTLL +++QSS 
Sbjct: 254 SYIPTSLIVIISWFSFWLDVEAVPGRVSLSITTLLTLATQSSA 296

Caenorhabditis elegans (taxid: 6239)

>sp|Q7TNC8|GLRA2_MOUSE Glycine receptor subunit alpha-2 OS=Mus musculus GN=Glra2 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 37/42 (88%)

Query: 14  YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
           Y+P++LIVI+SWVSFW+++D+ P R  LG+TT+L +++QSSG
Sbjct: 262 YIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSG 303

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Mus musculus (taxid: 10090)

>sp|P22771|GLRA2_RAT Glycine receptor subunit alpha-2 OS=Rattus norvegicus GN=Glra2 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 37/42 (88%)

Query: 14  YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
           Y+P++LIVI+SWVSFW+++D+ P R  LG+TT+L +++QSSG
Sbjct: 262 YIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSG 303

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Rattus norvegicus (taxid: 10116)

>sp|P24524|GLRA3_RAT Glycine receptor subunit alpha-3 OS=Rattus norvegicus GN=Glra3 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 37/42 (88%)

Query: 14  YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
           Y+P++LIVI+SWVSFW+++D+ P R  LG+TT+L +++QSSG
Sbjct: 261 YIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSG 302

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Rattus norvegicus (taxid: 10116)

>sp|P23416|GLRA2_HUMAN Glycine receptor subunit alpha-2 OS=Homo sapiens GN=GLRA2 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 37/42 (88%)

Query: 14  YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
           Y+P++LIVI+SWVSFW+++D+ P R  LG+TT+L +++QSSG
Sbjct: 262 YIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSG 303

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Homo sapiens (taxid: 9606)

>sp|Q91XP5|GLRA3_MOUSE Glycine receptor subunit alpha-3 OS=Mus musculus GN=Glra3 PE=2 SV=2

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 37/42 (88%)

Query: 14  YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
           Y+P++LIVI+SWVSFW+++D+ P R  LG+TT+L +++QSSG
Sbjct: 261 YIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSG 302

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Mus musculus (taxid: 10090)

>sp|O75311|GLRA3_HUMAN Glycine receptor subunit alpha-3 OS=Homo sapiens GN=GLRA3 PE=2 SV=2

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 37/42 (88%)

Query: 14  YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
           Y+P++LIVI+SWVSFW+++D+ P R  LG+TT+L +++QSSG
Sbjct: 261 YIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSG 302

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Homo sapiens (taxid: 9606)

>sp|O93430|GLRA1_DANRE Glycine receptor subunit alphaZ1 OS=Danio rerio GN=glra1 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 37/42 (88%)

Query: 14  YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
           Y+P++LIVI+SWVSFW+++D+ P R  LG+TT+L +++QSSG
Sbjct: 252 YIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSG 293

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Danio rerio (taxid: 7955)

>sp|P07727|GLRA1_RAT Glycine receptor subunit alpha-1 OS=Rattus norvegicus GN=Glra1 PE=1 SV=4

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/42 (54%), Positives = 37/42 (88%)

Query: 14  YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
           Y+P++LIVI+SW+SFW+++D+ P R  LG+TT+L +++QSSG
Sbjct: 256 YIPSLLIVILSWISFWINMDAAPARVGLGITTVLTMTTQSSG 297

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Rattus norvegicus (taxid: 10116)

>sp|Q64018|GLRA1_MOUSE Glycine receptor subunit alpha-1 OS=Mus musculus GN=Glra1 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/42 (54%), Positives = 37/42 (88%)

Query: 14  YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
           Y+P++LIVI+SW+SFW+++D+ P R  LG+TT+L +++QSSG
Sbjct: 256 YIPSLLIVILSWISFWINMDAAPARVGLGITTVLTMTTQSSG 297

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
328715292	343	PREDICTED: glycine receptor subunit beta	0.488	0.125	0.930	6e-15
391347839	422	PREDICTED: glycine receptor subunit alph	0.625	0.130	0.603	3e-12
391330514	439	PREDICTED: glycine receptor subunit alph	0.477	0.095	0.738	6e-12
241728072	187	glycine receptor alpha 1 variant, putati	0.636	0.299	0.610	6e-12
427793163	302	hypothetical protein, partial [Rhipiceph	0.488	0.142	0.720	7e-12
391328876	369	PREDICTED: glycine receptor subunit alph	0.625	0.149	0.568	2e-11
324508899	292	Glutamate-gated chloride channel [Ascari	0.477	0.143	0.666	3e-10
341882996	329	hypothetical protein CAEBREN_32774 [Caen	0.477	0.127	0.666	3e-10
312091273	388	glutamate-gated chloride channel alpha3A	0.681	0.154	0.476	3e-10
170571082	378	glutamate-gated chloride channel alpha3A	0.681	0.158	0.476	4e-10

>gi|328715292|ref|XP_001943367.2| PREDICTED: glycine receptor subunit beta-type 4-like [Acyrthosiphon pisum]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/43 (93%), Positives = 42/43 (97%)

Query: 13  SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
           SYLPT+LIV+ISWVSFWMDVDSVPGRTTLGVTTLLAV SQSSG
Sbjct: 171 SYLPTMLIVVISWVSFWMDVDSVPGRTTLGVTTLLAVGSQSSG 213

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391347839|ref|XP_003748161.1| PREDICTED: glycine receptor subunit alpha-2-like [Metaseiulus occidentalis]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 45/58 (77%), Gaps = 3/58 (5%)

Query: 13  SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQIE 70
           SYLPTILIV+ISWVSFW+DVD++P R TLGVTTLL +SS+ +G   I S   P + ++
Sbjct: 265 SYLPTILIVVISWVSFWLDVDAIPARVTLGVTTLLTISSKGAG---IQSNLPPVSYVK 319

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391330514|ref|XP_003739705.1| PREDICTED: glycine receptor subunit alpha-3-like [Metaseiulus occidentalis]

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/42 (73%), Positives = 39/42 (92%)

Query: 13  SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSS 54
           SYLP+ILIV+ISWVSFW+DVD++P R TLGVTTLL +S++SS
Sbjct: 282 SYLPSILIVVISWVSFWLDVDAIPARVTLGVTTLLTISAESS 323

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241728072|ref|XP_002412242.1| glycine receptor alpha 1 variant, putative [Ixodes scapularis] gi|215505463|gb|EEC14957.1| glycine receptor alpha 1 variant, putative [Ixodes scapularis]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 47/59 (79%), Gaps = 3/59 (5%)

Query: 5   KRGLTGRL--SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGY-ANIA 60
           KR +   L  SYLP+ LIV++SWVSFW+DVD++P R TLGVTTLL +SS+SS + AN+A
Sbjct: 74  KRSIGHHLVQSYLPSTLIVVVSWVSFWLDVDAIPARITLGVTTLLTISSESSDHQANLA 132

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427793163|gb|JAA62033.1| hypothetical protein, partial [Rhipicephalus pulchellus]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/43 (72%), Positives = 39/43 (90%)

Query: 13  SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
           SYLPTILIV+ISWVSFW+DV+++P R TLGVTTLL +SS+ +G
Sbjct: 128 SYLPTILIVVISWVSFWLDVEAIPARITLGVTTLLTISSKGAG 170

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391328876|ref|XP_003738909.1| PREDICTED: glycine receptor subunit alpha-2-like [Metaseiulus occidentalis]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 44/58 (75%), Gaps = 3/58 (5%)

Query: 13  SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQIE 70
           SYLPT+LIV+ISWVSFW+DV+++P R TLGVTTLL +SS+  G   I S   P + ++
Sbjct: 198 SYLPTVLIVVISWVSFWLDVEAIPARITLGVTTLLTISSKGVG---IQSNLPPVSYVK 252

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|324508899|gb|ADY43751.1| Glutamate-gated chloride channel [Ascaris suum]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/42 (66%), Positives = 37/42 (88%)

Query: 14  YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
           Y+P+ ++VI+SWVSFW+D DSVP R TLGVTTLL +++QSSG
Sbjct: 107 YIPSFMLVIVSWVSFWLDKDSVPARVTLGVTTLLTMTTQSSG 148

Source: Ascaris suum

Species: Ascaris suum

Genus: Ascaris

Family: Ascarididae

Order: Ascaridida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|341882996|gb|EGT38931.1| hypothetical protein CAEBREN_32774 [Caenorhabditis brenneri]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/42 (66%), Positives = 37/42 (88%)

Query: 14  YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
           Y+P+ ++VI+SWVSFW+D DSVP R TLGVTTLL +++QSSG
Sbjct: 174 YIPSFMLVIVSWVSFWLDKDSVPARVTLGVTTLLTMTTQSSG 215

Source: Caenorhabditis brenneri

Species: Caenorhabditis brenneri

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|312091273|ref|XP_003146921.1| glutamate-gated chloride channel alpha3A subunit [Loa loa]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 47/63 (74%), Gaps = 3/63 (4%)

Query: 8   LTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT 67
           +  RL Y+P I++V++SWVSFW+D D+VP R +LGVTTLL +++Q+SG   I ++  P +
Sbjct: 229 VVSRLLYIPCIMLVVVSWVSFWLDKDAVPARVSLGVTTLLTMTTQASG---INAKLPPVS 285

Query: 68  QIE 70
            I+
Sbjct: 286 YIK 288

Source: Loa loa

Species: Loa loa

Genus: Loa

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|170571082|ref|XP_001891593.1| glutamate-gated chloride channel alpha3A subunit [Brugia malayi] gi|158603828|gb|EDP39606.1| glutamate-gated chloride channel alpha3A subunit, putative [Brugia malayi]

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 47/63 (74%), Gaps = 3/63 (4%)

Query: 8   LTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT 67
           +  RL Y+P I++V++SWVSFW+D D+VP R +LGVTTLL +++Q+SG   I ++  P +
Sbjct: 209 VVSRLLYIPCIMLVVVSWVSFWLDKDAVPARVSLGVTTLLTMTTQASG---INAKLPPVS 265

Query: 68  QIE 70
            I+
Sbjct: 266 YIK 268

Source: Brugia malayi

Species: Brugia malayi

Genus: Brugia

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
WB|WBGene00000232	430	avr-14 [Caenorhabditis elegans	0.613	0.125	0.508	8.6e-11
WB|WBGene00001586	473	ggr-1 [Caenorhabditis elegans	0.477	0.088	0.666	1.3e-10
WB|WBGene00001591	461	glc-1 [Caenorhabditis elegans	0.613	0.117	0.508	3.4e-10
UNIPROTKB|E2QZJ3	374	GLRA2 "Uncharacterized protein	0.477	0.112	0.571	6.2e-10
UNIPROTKB|F1MNR0	375	GLRA3 "Uncharacterized protein	0.477	0.112	0.571	6.2e-10
UNIPROTKB|F1RJ16	376	GLRA3 "Uncharacterized protein	0.477	0.111	0.571	6.3e-10
UNIPROTKB|F1SQV0	385	GLRA2 "Uncharacterized protein	0.477	0.109	0.571	6.6e-10
UNIPROTKB|K7GSI6	385	GLRA2 "Uncharacterized protein	0.477	0.109	0.571	6.6e-10
UNIPROTKB|E2RCM7	457	GLRA4 "Uncharacterized protein	0.477	0.091	0.571	7.1e-10
UNIPROTKB|F1Q2X8	409	GLRA3 "Uncharacterized protein	0.477	0.102	0.571	7.4e-10

WB|WBGene00000232 avr-14 [Caenorhabditis elegans (taxid:6239)]

 Score = 158 (60.7 bits), Expect = 8.6e-11, P = 8.6e-11
 Identities = 29/57 (50%), Positives = 44/57 (77%)

Query:    14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQIE 70
             Y+P I++V++SWVSFW+D D+VP R +LGVTTLL +++Q+SG   I S+  P + I+
Sbjct:   261 YIPCIMLVVVSWVSFWLDKDAVPARVSLGVTTLLTMTTQASG---INSKLPPVSYIK 314

GO:0006811 "ion transport" evidence=IEA;IDA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0042493 "response to drug" evidence=IGI

GO:0031987 "locomotion involved in locomotory behavior" evidence=IGI;IMP

GO:0043051 "regulation of pharyngeal pumping" evidence=IGI;IMP

GO:0008144 "drug binding" evidence=IGI

GO:0008068 "extracellular-glutamate-gated chloride channel activity" evidence=IDA

WB|WBGene00001586 ggr-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 157 (60.3 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 28/42 (66%), Positives = 37/42 (88%)

Query:    13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSS 54
             SY+PT LIVIISW SFW+DV++VPGR +L +TTLL +++QSS
Sbjct:   254 SYIPTSLIVIISWFSFWLDVEAVPGRVSLSITTLLTLATQSS 295

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

WB|WBGene00001591 glc-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 153 (58.9 bits), Expect = 3.4e-10, P = 3.4e-10
 Identities = 29/57 (50%), Positives = 42/57 (73%)

Query:    14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQIE 70
             Y+P+ ++VI+SWVSFW D  ++P R TLGVTTLL +++QS+G   I SQ  P + I+
Sbjct:   282 YIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAG---INSQLPPVSYIK 335

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0031987 "locomotion involved in locomotory behavior" evidence=IGI;IMP

UNIPROTKB|E2QZJ3 GLRA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 149 (57.5 bits), Expect = 6.2e-10, P = 6.2e-10
 Identities = 24/42 (57%), Positives = 37/42 (88%)

Query:    14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
             Y+P++LIVI+SWVSFW+++D+ P R  LG+TT+L +++QSSG
Sbjct:   262 YIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSG 303

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016934 "extracellular-glycine-gated chloride channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

UNIPROTKB|F1MNR0 GLRA3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 149 (57.5 bits), Expect = 6.2e-10, P = 6.2e-10
 Identities = 24/42 (57%), Positives = 37/42 (88%)

Query:    14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
             Y+P++LIVI+SWVSFW+++D+ P R  LG+TT+L +++QSSG
Sbjct:   174 YIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSG 215

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

UNIPROTKB|F1RJ16 GLRA3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 149 (57.5 bits), Expect = 6.3e-10, P = 6.3e-10
 Identities = 24/42 (57%), Positives = 37/42 (88%)

Query:    14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
             Y+P++LIVI+SWVSFW+++D+ P R  LG+TT+L +++QSSG
Sbjct:   173 YIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSG 214

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

UNIPROTKB|F1SQV0 GLRA2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 149 (57.5 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 24/42 (57%), Positives = 37/42 (88%)

Query:    14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
             Y+P++LIVI+SWVSFW+++D+ P R  LG+TT+L +++QSSG
Sbjct:   195 YIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSG 236

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016934 "extracellular-glycine-gated chloride channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

UNIPROTKB|K7GSI6 GLRA2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 149 (57.5 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 24/42 (57%), Positives = 37/42 (88%)

Query:    14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
             Y+P++LIVI+SWVSFW+++D+ P R  LG+TT+L +++QSSG
Sbjct:   195 YIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSG 236

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016934 "extracellular-glycine-gated chloride channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

UNIPROTKB|E2RCM7 GLRA4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 150 (57.9 bits), Expect = 7.1e-10, P = 7.1e-10
 Identities = 24/42 (57%), Positives = 38/42 (90%)

Query:    14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
             Y+P++LIVI+SWVSFW+++D+ P R +LG+TT+L +++QSSG
Sbjct:   263 YIPSLLIVILSWVSFWINMDAAPARVSLGITTVLTMTTQSSG 304

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

UNIPROTKB|F1Q2X8 GLRA3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 149 (57.5 bits), Expect = 7.4e-10, P = 7.4e-10
 Identities = 24/42 (57%), Positives = 37/42 (88%)

Query:    14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
             Y+P++LIVI+SWVSFW+++D+ P R  LG+TT+L +++QSSG
Sbjct:   221 YIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSG 262

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P22771	GLRA2_RAT	No assigned EC number	0.5714	0.4772	0.0929	yes	N/A
Q7TNC8	GLRA2_MOUSE	No assigned EC number	0.5714	0.4772	0.0929	yes	N/A
P23416	GLRA2_HUMAN	No assigned EC number	0.5714	0.4772	0.0929	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	88
TIGR00860	459	TIGR00860, LIC, Cation transporter family protein	3e-14
pfam02932	228	pfam02932, Neur_chan_memb, Neurotransmitter-gated	3e-13

>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein

 Score = 65.5 bits (160), Expect = 3e-14
 Identities = 24/42 (57%), Positives = 34/42 (80%)

Query: 14  YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSG 55
           Y+P+ILIVI+SWVSFW+  D+   R +LG+TTLL +++ SSG
Sbjct: 248 YIPSILIVILSWVSFWLPADASGARVSLGITTLLTMTTFSSG 289

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459

>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel transmembrane region

 Score = 61.5 bits (150), Expect = 3e-13
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANI 59
           +P +LI  +SW+ FW+  D+ P + TLG+TTLL ++         
Sbjct: 2  IIPCVLISFLSWLVFWLPADAGPEKVTLGITTLLTMTVFLLLIRES 47

This family includes the four transmembrane helices that form the ion channel. Length = 228

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
KOG3643|consensus	459		99.93
KOG3644|consensus	457		99.93
KOG3642|consensus	466		99.89
PF02932	237	Neur_chan_memb: Neurotransmitter-gated ion-channel	99.82
TIGR00860	459	LIC Cation transporter family protein. selective w	99.74
KOG3645|consensus	449		99.05
KOG3646|consensus	486		98.85

>KOG3643|consensus

Probab=99.93  E-value=8.7e-28  Score=188.00  Aligned_cols=71  Identities=30%  Similarity=0.562  Sum_probs=70.0

Q ss_pred             CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCchhhhhhhh
Q psy10144          3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQIERKGERE   76 (88)
Q Consensus         3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSYikaid~~~   76 (88)
                      +|++|||++|+|+|++++|++||+||||+.|+.|||++||+||+|||+++.++   .+++||++||+||||+++
T Consensus       239 ~Rnigf~ilQ~y~PS~LiVilSWVSFWin~~a~pARv~lGITTVLTMTTl~t~---~n~slPrvSYVKAiDiYL  309 (459)
T KOG3643|consen  239 RRNIGFYILQTYIPSTLIVILSWVSFWINRDASPARVALGITTVLTMTTLMTS---TNESLPRVSYVKAIDVYL  309 (459)
T ss_pred             EeeccEEEEeeecchhhhhHHhHhHhhhccccchhheeeceehHHhHHHHHhh---hhccCCCccceeeehhhh
Confidence            69999999999999999999999999999999999999999999999999999   999999999999999998

>KOG3644|consensus

Probab=99.93  E-value=2.5e-27  Score=186.84  Aligned_cols=71  Identities=42%  Similarity=0.711  Sum_probs=69.9

Q ss_pred             CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCchhhhhhhh
Q psy10144          3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQIERKGERE   76 (88)
Q Consensus         3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSYikaid~~~   76 (88)
                      +|+.|||++|.|+|+.++|++||+|||++++++|||++||+|++|+++++..+   ++.+||+|||+||||+|+
T Consensus       248 ~R~~g~yllQ~YiPT~l~ViiSWvSFWLd~~A~PARv~LgvtsLLtLttq~~~---i~~~LP~VSYvKAIDVWm  318 (457)
T KOG3644|consen  248 KRRYGYYLLQTYIPTLLIVIISWVSFWLDPKAVPARVTLGVTSLLTLTTQSGG---IRRNLPKVSYVKAIDVWM  318 (457)
T ss_pred             EEeehhhhhHHHhhhHhhhhhhhhheecCCCcccceEEehHHHHHHHHHHhcc---hhhcCCchhhHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999888   999999999999999999

>KOG3642|consensus

Probab=99.89  E-value=4.5e-25  Score=173.33  Aligned_cols=71  Identities=31%  Similarity=0.556  Sum_probs=69.7

Q ss_pred             CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCchhhhhhhh
Q psy10144          3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQIERKGERE   76 (88)
Q Consensus         3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSYikaid~~~   76 (88)
                      +|++|||++|+|+||+|+|++||++||+++|++|||+++|+|++|+|+++...   +++++|||||.||+|.+.
T Consensus       247 ~R~~GYf~iQ~YlPC~ltViLSwVSFWinrEs~paRt~lGITtVLTMTtLs~~---aR~slPKVsy~TAmD~fI  317 (466)
T KOG3642|consen  247 SRRQGYFIIQIYLPCILTVVLSWVSFWINREATPARTSLGITTVLTMTTLSTS---ARKSLPKVSYATALDVFI  317 (466)
T ss_pred             cceeeEEEEeeccceeeeeeeeeeehhccccccccceeeeeeeeeeeeeeeeh---hccCCCccccchhHHHHH
Confidence            69999999999999999999999999999999999999999999999999999   999999999999999887

>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=99.82  E-value=1.7e-22  Score=134.36  Aligned_cols=61  Identities=39%  Similarity=0.622  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCchhhhhhhh
Q psy10144         13 SYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQIERKGERE   76 (88)
Q Consensus        13 ~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSYikaid~~~   76 (88)
                      +|+||++++++||++||+|+++.|+|++||+|++|+++++...   +++.||++||.+++|.|+
T Consensus         1 l~~P~~li~~~s~~~f~~~~~~~~~rv~l~it~lL~~~~~~~~---~~~~lP~~s~~~pl~~~~   61 (237)
T PF02932_consen    1 LIIPCILIVVLSWLSFWLPPESGPERVTLGITTLLAMTVFLLM---VAENLPPTSYAKPLDGWY   61 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSHHHHHH
T ss_pred             CeehHHHHHHHHHhheEeCccccccccccchhHHHHHHHHHhh---hhhhhcccccccchhhhh
Confidence            5899999999999999999999889999999999999999999   999999999999999998

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....

>TIGR00860 LIC Cation transporter family protein

Probab=99.74  E-value=7.8e-19  Score=137.81  Aligned_cols=71  Identities=34%  Similarity=0.552  Sum_probs=69.3

Q ss_pred             CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCchhhhhhhh
Q psy10144          3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQIERKGERE   76 (88)
Q Consensus         3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSYikaid~~~   76 (88)
                      +|+++||++++++||++++++||++||+|+++.++|+++|+|++|+++++...   +++.+|++||+++||+|+
T Consensus       237 ~R~~~~y~~~l~iP~~li~~ls~~sF~Lp~~a~~eRi~L~it~lLs~~vf~~~---v~~~lP~~S~vpli~~y~  307 (459)
T TIGR00860       237 RRRPLYYLLQLYIPSILIVILSWVSFWLPADASGARVSLGITTLLTMTTFSSG---VRESLPAVSYVKAIDVYF  307 (459)
T ss_pred             EEcccceeeeehHHHHHHHHHhheeEecCCCCCCCcEEEEEEHHHHHHHHHHH---HHhhCCCcchHHHHHHHH
Confidence            79999999999999999999999999999997789999999999999999999   999999999999999998

selective while glycine receptors are anion selective).

>KOG3645|consensus

Probab=99.05  E-value=8.5e-11  Score=92.41  Aligned_cols=71  Identities=27%  Similarity=0.318  Sum_probs=67.5

Q ss_pred             CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCc-hhhhhhhh
Q psy10144          3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQ-IERKGERE   76 (88)
Q Consensus         3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSY-ikaid~~~   76 (88)
                      +|++.||++++++||+++.+++-++||+|++...+|+++|++++|+++.+...   +++.+|++|- ++.+..++
T Consensus       236 rRkplyY~v~liiP~~lis~l~il~fflp~~~~~eki~L~it~Ll~~tv~ll~---vs~~~P~ts~~iPLig~y~  307 (449)
T KOG3645|consen  236 RRKPLYYTVNLIIPCFLISFLSILGFFLPSDSGTEKVTLGITVLLAMTVFLLL---VSDKMPPTSSVIPLIGKYL  307 (449)
T ss_pred             EeccceEEEehhhhHHHHHHHHhheEEccCCCCCceEEEEHHHHHHHHHHHHH---HHhhcCCccCcchHHHHHH
Confidence            79999999999999999999999999999888779999999999999999999   9999999996 89998876

>KOG3646|consensus

Probab=98.85  E-value=2.9e-09  Score=84.74  Aligned_cols=70  Identities=24%  Similarity=0.286  Sum_probs=66.3

Q ss_pred             CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhh
Q psy10144          3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERE   76 (88)
Q Consensus         3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~   76 (88)
                      +||..||.+++++||+++.+++-.+|-+|||+. +++++++|.+|+.++|...   +++..|++| -++.+.+++
T Consensus       232 rRRTLyYgfNlIiP~lLIs~m~lLgFtlppD~g-EKitL~iTilLsvc~FL~m---vse~~PpTSeaVPllg~fF  302 (486)
T KOG3646|consen  232 RRRTLYYGFNLIIPSLLISLMSLLGFTLPPDAG-EKITLQITILLSVCFFLTM---VSEMTPPTSEAVPLLGAFF  302 (486)
T ss_pred             EehhhHHHHHHHHHHHHHHHHHHhccccCcccc-ceeeeeeehHHHHHHHHHH---HHhhcCCccccccHHHHHH
Confidence            689999999999999999999999999999986 9999999999999999999   999999999 588888876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	88
3rhw_A	347	C. Elegans Glutamate-Gated Chloride Channel (Glucl)		2e-11

>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In Complex With Fab And Ivermectin Length = 347

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 42/57 (73%), Gaps = 3/57 (5%)
Query: 14  YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQIE 70
           Y+P+ ++VI+SWVSFW D  ++P R TLGVTTLL +++QS+G   I SQ  P + I+
Sbjct: 221 YIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAG---INSQLPPVSYIK 274

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	88
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	1e-17
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	1e-17
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	3e-17
1vry_A	76	Glycine receptor alpha-1 chain; second transmembra	6e-05
1oed_E	260	Acetylcholine receptor protein, gamma chain; ION c	9e-05
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	1e-04
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	3e-04
2lkg_A	140	Acetylcholine receptor; transmembrane domain, SIGN	3e-04
1oed_B	250	Acetylcholine receptor protein, beta chain; ION ch	3e-04
1oed_A	227	Acetylcholine receptor protein, alpha chain; ION c	5e-04
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	5e-04
1oed_C	260	Acetylcholine receptor protein, delta chain; ION c	6e-04

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322

 Score = 74.3 bits (183), Expect = 1e-17
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 14  YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANI 59
            LP  LI+  SW  FW+  +S   R     T +L V + +   +NI
Sbjct: 209 ILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVVAYAFYTSNI 252

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347

 Score = 74.5 bits (183), Expect = 1e-17
 Identities = 24/46 (52%), Positives = 36/46 (78%)

Query: 14  YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANI 59
           Y+P+ ++VI+SWVSFW D  ++P R TLGVTTLL +++QS+G  + 
Sbjct: 221 YIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGINSQ 266

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321

 Score = 73.1 bits (180), Expect = 3e-17
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 14  YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANI 59
            LP + I+ ISW +FW    S     TL V+TL+A  + +      
Sbjct: 206 ILPMLFILFISWTAFWS--TSYEANVTLVVSTLIAHIAFNILVETC 249

>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Length = 76

 Score = 36.8 bits (85), Expect = 6e-05
 Identities = 11/21 (52%), Positives = 17/21 (80%)

Query: 35 VPGRTTLGVTTLLAVSSQSSG 55
          +P R  LG+TT+L +++QSSG
Sbjct: 1  LPARVGLGITTVLTLTTQSSG 21

>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Length = 260

 Score = 38.0 bits (87), Expect = 9e-05
 Identities = 8/36 (22%), Positives = 19/36 (52%)

Query: 15 LPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVS 50
           P +LI  +  + +++   +   + TL ++ LLA +
Sbjct: 10 APCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQT 45

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461

 Score = 37.7 bits (87), Expect = 1e-04
 Identities = 9/36 (25%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 15  LPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVS 50
           +P +L   ++ + F++  DS   + TL ++ LL+++
Sbjct: 244 IPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLT 278

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 8/36 (22%), Positives = 19/36 (52%)

Query: 15  LPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVS 50
            P +LI  +  + +++   +   + TL ++ LLA +
Sbjct: 220 APCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQT 255

>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A Length = 140

 Score = 36.0 bits (83), Expect = 3e-04
 Identities = 6/36 (16%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 15 LPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVS 50
           P      ++ + F++  DS   + T   + L +++
Sbjct: 58 EPCKKFSELTGLVFYLPTDS-GEKMTESKSVLKSLT 92

>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Length = 250

 Score = 36.4 bits (83), Expect = 3e-04
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 15 LPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVS 50
          +P ILI I++ + F++  D+   + +L ++ LLAV+
Sbjct: 10 IPCILISILAILVFYLPPDA-GEKMSLSISALLAVT 44

>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B Length = 227

 Score = 35.9 bits (82), Expect = 5e-04
 Identities = 9/36 (25%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 15 LPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVS 50
          +P +L   ++ + F++  DS   + TL ++ LL+++
Sbjct: 10 IPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLT 44

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 36.0 bits (83), Expect = 5e-04
 Identities = 9/36 (25%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 15  LPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVS 50
           +P +L   ++ + F++  DS   + TL ++ LL+++
Sbjct: 220 IPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLT 254

>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Length = 260

 Score = 35.6 bits (81), Expect = 6e-04
 Identities = 8/36 (22%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 15 LPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVS 50
           P +LI  ++ ++F++  +S   + +  ++ LLA +
Sbjct: 10 TPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQA 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	88
2lkg_A	140	Acetylcholine receptor; transmembrane domain, SIGN	99.85
2lly_A	137	Neuronal acetylcholine receptor subunit alpha-4; t	99.84
2ksr_A	164	Neuronal acetylcholine receptor subunit beta-2; ni	99.83
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	99.83
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	99.8
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	99.79
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	99.79
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	99.79
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	99.76
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	99.76
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	99.76
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	99.74
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	99.73
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	99.71
1oed_A	227	Acetylcholine receptor protein, alpha chain; ION c	99.67
1oed_E	260	Acetylcholine receptor protein, gamma chain; ION c	99.66
1oed_B	250	Acetylcholine receptor protein, beta chain; ION ch	99.65
1oed_C	260	Acetylcholine receptor protein, delta chain; ION c	99.58
1vry_A	76	Glycine receptor alpha-1 chain; second transmembra	99.35
1mot_A	28	Glycine receptor alpha-1 chain; second transmembra	97.94

>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A

Probab=99.85  E-value=1.4e-22  Score=137.73  Aligned_cols=72  Identities=14%  Similarity=0.075  Sum_probs=69.1

Q ss_pred             CCccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhhh
Q psy10144          2 GPNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERER   77 (88)
Q Consensus         2 ~~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~~   77 (88)
                      -+|+++||++++|+||++++++||++||+|+|+ ++|+++|++++|+++++...   +++++|++| |+|++|.|+.
T Consensus        45 lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~lLs~tvfl~~---v~~~lP~tS~~vPlI~~y~~  117 (140)
T 2lkg_A           45 GGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDS-GEKMTESKSVLKSLTEKLKK---IVELIPSTSSAVPLIGKYML  117 (140)
T ss_dssp             SSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCSS-SHHHHHHHHHHHHHHHHHHG---GGGTCTTTGGGHHHHHHHHH
T ss_pred             EEEcceeeeehhhhHHHHHHHHHhheeEcCCCC-CCEEEEeeehHHHHHHHHHH---HHHhCCCccccccHHHHHHH
Confidence            379999999999999999999999999999996 79999999999999999999   999999999 9999999984

>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}

Probab=99.84  E-value=2.7e-22  Score=135.66  Aligned_cols=70  Identities=17%  Similarity=0.167  Sum_probs=68.4

Q ss_pred             CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhh
Q psy10144          3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERE   76 (88)
Q Consensus         3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~   76 (88)
                      +|+++||++++|+||++++++||++||+|+|+ ++|+++|+|++|+++++...   +++++|++| |+|++|.|+
T Consensus         4 rR~~~~y~~~~iiP~~li~~Ls~~~F~lp~~s-~eRv~lgit~lLs~tv~l~~---~~~~lP~tS~~vpli~~y~   74 (137)
T 2lly_A            4 EELPLFYTINLIIPCLLISCLTVLVFYLPSEC-GEKITLCISVLLSLTVFLLL---ITEIIPSTSSVSPSIGEYL   74 (137)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCST-THHHHHHHHHHHHHHHHHHH---HHHHCSCCSSSCCSTHHHH
T ss_pred             EeeehhhhHHHHHHHHHHHHHHHHheeeCCCC-CCeEEEEeeeHHHHHHHHHH---HHHhCCCCcccchHHHHHH
Confidence            79999999999999999999999999999998 79999999999999999999   999999999 999999998

>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A

Probab=99.83  E-value=4.5e-22  Score=138.27  Aligned_cols=70  Identities=21%  Similarity=0.262  Sum_probs=68.5

Q ss_pred             CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhh
Q psy10144          3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERE   76 (88)
Q Consensus         3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~   76 (88)
                      +|+++||++++|+||++++++||++||+|+|+ ++|+++|+|++|+++++...   +++++|++| |+|++|+|+
T Consensus        25 rR~~~~Y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~LLs~tvfl~~---v~~~lP~tS~~vPlI~~y~   95 (164)
T 2ksr_A           25 RRKPLFYTINLIIPCVLITSLAILVFYLPSDC-GEKMTLCISVLLALTVFLLL---ISKIVPPTSLDVPLVGKYL   95 (164)
T ss_dssp             CCCTHHHHHHTHHHHHHHHHHHHHHHTSCCCS-HHHHHHHHHHHHHHHHHHHH---HHTTCCSSCTTHHHHHHHH
T ss_pred             EEeehheeeeehhhHHHHHHHHhheeEcCCCC-CCeEEEeeehHHHHHHHHHH---HHHHCCCCcccCCHHHHHH
Confidence            79999999999999999999999999999998 79999999999999999999   999999999 999999998

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*

Probab=99.83  E-value=3.1e-22  Score=149.54  Aligned_cols=71  Identities=41%  Similarity=0.679  Sum_probs=69.6

Q ss_pred             CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCchhhhhhhh
Q psy10144          3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQIERKGERE   76 (88)
Q Consensus         3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSYikaid~~~   76 (88)
                      +|+++||++++|+||++++++||++||+|+++.++|+++|+|++|+++++...   +++.+|++||+|+||+|+
T Consensus       210 ~R~~~~y~~~l~iP~~li~~ls~~sF~lp~~~~~~Rv~lgit~lLt~tv~~~~---~~~~lP~~S~v~~id~~~  280 (347)
T 3rhw_A          210 KREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAG---INSQLPPVSYIKAIDVWI  280 (347)
T ss_dssp             EECSHHHHHHTHHHHHHHHHHHHTTTTSCTTCHHHHHHHHHHHHHHHHHHHHH---HHHTSCCCSSCCHHHHHH
T ss_pred             EEEeeEEEEEeehhHHHHHHHhheEEeccCCCCcceEEEEeehHHHHHHHHHH---HHhhCCCccceeHHHHHH
Confidence            69999999999999999999999999999999889999999999999999999   999999999999999998

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.80  E-value=6.2e-22  Score=149.54  Aligned_cols=71  Identities=18%  Similarity=0.135  Sum_probs=69.4

Q ss_pred             CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCc-hhhhhhhh
Q psy10144          3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQ-IERKGERE   76 (88)
Q Consensus         3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSY-ikaid~~~   76 (88)
                      +|+++||++++|+||++++++||++||+|+++.++|+++|+|++|+++++...   +++.||++|| +|+||+|+
T Consensus       208 ~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~a~~~Rv~lgit~lLt~t~~~~~---~~~~lP~~S~~vp~i~~~~  279 (370)
T 2bg9_E          208 QRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFL---IAQKVPETSLNVPLIGKYL  279 (370)
T ss_dssp             EECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCSHHH
T ss_pred             EEccCceeEEEehhHHHHHHHHHHeEEeccccCcceeEEeeeHHHHHHHHHHH---HHHhCCCccCCCChHHHHH
Confidence            79999999999999999999999999999998899999999999999999999   9999999999 99999998

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.79  E-value=1.8e-21  Score=147.01  Aligned_cols=70  Identities=17%  Similarity=0.201  Sum_probs=68.1

Q ss_pred             CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCc-hhhhhhhh
Q psy10144          3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQ-IERKGERE   76 (88)
Q Consensus         3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSY-ikaid~~~   76 (88)
                      +|+++||++++|+||++++++||++||+|+++ ++|+++|+|++|+++++...   +++.+|++|| +|+||+|+
T Consensus       208 ~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~~-~~Rv~lgit~lLt~t~~~~~---~~~~lP~~S~~vp~i~~~~  278 (370)
T 2bg9_A          208 QRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVFLLV---IVELIPSTSSAVPLIGKYM  278 (370)
T ss_dssp             ECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCGGGH
T ss_pred             EEccchhhhhhhhHHHHHHHHHHHheecCCCC-CCeEEEeHHHHHHHHHHHHH---HHhhCCCCcCCCCHHHHHH
Confidence            79999999999999999999999999999998 69999999999999999999   9999999998 99999998

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.79  E-value=4.5e-21  Score=144.98  Aligned_cols=70  Identities=20%  Similarity=0.218  Sum_probs=68.2

Q ss_pred             CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCc-hhhhhhhh
Q psy10144          3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQ-IERKGERE   76 (88)
Q Consensus         3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSY-ikaid~~~   76 (88)
                      +|+++||++++|+||++++++||++||+|++ .++|+++|+|++|+++++...   +++.+|++|| +|+||+|+
T Consensus       205 ~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~-~~~Rv~lgit~lLt~t~~~~~---~~~~lP~~S~~vp~i~~~~  275 (370)
T 2bg9_B          205 QRKPLFYIVYTIVPCILISILAILVFYLPPD-AGEKMSLSISALLALTVFLLL---LADKVPETSLSVPIIISYL  275 (370)
T ss_dssp             ECCCCSSHHHHHHHHHHHHHHHHHHHHSTTT-CTTHHHHHHHHHHHHHHHHHH---HHHHHHHHHTTSCCCSHHH
T ss_pred             EEcccceeeeecchHHHHHHHHhheEEccCC-CCceEEEEehHHHHHHHHHHH---HHhhCCCccccccHHHHHH
Confidence            7999999999999999999999999999999 689999999999999999999   9999999998 99999998

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.79  E-value=2.2e-21  Score=146.65  Aligned_cols=70  Identities=14%  Similarity=0.116  Sum_probs=68.1

Q ss_pred             CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCc-hhhhhhhh
Q psy10144          3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQ-IERKGERE   76 (88)
Q Consensus         3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSY-ikaid~~~   76 (88)
                      +|+++||++++|+||++++++||++||+|++ .++|+++|+|++|+++++...   +++.||++|| +|+||+|+
T Consensus       207 ~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~-~~~Rv~lgit~lLt~t~~~~~---~~~~lP~~S~~vp~i~~~~  277 (369)
T 2bg9_C          207 RRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLLL---TSQRLPETALAVPLIGKYL  277 (369)
T ss_dssp             EECCSSHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHH---HHHHHHHHHHTSCCCHHHH
T ss_pred             EEccceeEEEEcchHHHHHHHHhheEEecCC-CCCeEEEEhHHHHHHHHHHHH---HHHhCCCCccCccHHHHHH
Confidence            7999999999999999999999999999999 589999999999999999999   9999999998 99999998

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...

Probab=99.76  E-value=4.3e-20  Score=136.52  Aligned_cols=69  Identities=25%  Similarity=0.282  Sum_probs=65.9

Q ss_pred             CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCchhhhhhhh
Q psy10144          3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQIERKGERE   76 (88)
Q Consensus         3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSYikaid~~~   76 (88)
                      +|+++||++++|+||++++++||++||  |++.++|+++|+|++|+++++...   +++.+|++||+|+||+|+
T Consensus       195 ~R~~~~y~~~~~iP~~li~~ls~~sF~--p~~~~~Rv~l~it~lL~~t~~~~~---~~~~lP~~s~vp~i~~~~  263 (321)
T 3tlw_A          195 SRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIAFNIL---VETCLPKTPYMTYTGAII  263 (321)
T ss_dssp             EECCTTHHHHTHHHHHHHHHHHGGGGG--CCCHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCSSCCHHHHHH
T ss_pred             EEeeceeehhHHHHHHHHHHHhheeec--cCCCCCcEEEEhhHHHHHHHHHHH---HHhhCCCccccHHHHHHH
Confidence            799999999999999999999999999  555579999999999999999999   999999999999999998

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*

Probab=99.76  E-value=6e-20  Score=135.80  Aligned_cols=69  Identities=19%  Similarity=0.183  Sum_probs=66.8

Q ss_pred             CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCchhhhhhhh
Q psy10144          3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQIERKGERE   76 (88)
Q Consensus         3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSYikaid~~~   76 (88)
                      +|+++||++++|+||++++++||++||+|  +.++|+++|+|++|+++++...   +++.+|++||+|+||+|+
T Consensus       198 ~R~~~~y~~~~~iP~~li~~ls~~sF~lp--~~~~Rv~l~it~lL~~~~~~~~---~~~~lP~~s~vp~i~~~~  266 (322)
T 3rqw_A          198 VRNPSYYLWSFILPLGLIIAASWSVFWLE--SFSERLQTSFTLMLTVVAYAFY---TSNILPRLPYTTVIDQMI  266 (322)
T ss_dssp             EECCHHHHHHTHHHHHHHHHHHHGGGGCS--SHHHHHHHHHHHHHHHHHHHHH---HHHHSCCCSSCCHHHHHH
T ss_pred             EEeeeeeeehHHHHHHHHHHHHHHHhccC--CCCCcEEEEEehHHHHHHHHHH---HhhhCCCccchHHHHHHH
Confidence            79999999999999999999999999999  5579999999999999999999   999999999999999998

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B

Probab=99.76  E-value=1.1e-19  Score=142.36  Aligned_cols=70  Identities=20%  Similarity=0.223  Sum_probs=68.2

Q ss_pred             CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCc-hhhhhhhh
Q psy10144          3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQ-IERKGERE   76 (88)
Q Consensus         3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSY-ikaid~~~   76 (88)
                      +|+++||++++|+||++++++||++||+|+++ ++|+++|+|++|+++++...   +++.+|++|| +++||+|+
T Consensus       238 rR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~s-~eRvsLgiT~LLt~tvfl~~---v~~~LP~tS~~vPlI~~y~  308 (493)
T 4aq5_B          238 QRKPLFYIVYTIVPCILISILAILVFYLPPDA-GEKMSLSISALLALTVFLLL---LADKVPETSLSVPIIISYL  308 (493)
T ss_dssp             BCCCCSSTTTTHHHHHHHHHHHHHHHHSTTTC-GGGGTHHHHHHHHHHHHHHH---HHHHTTTTTTSSCCCCHHH
T ss_pred             EeccceeeehhhhhHHHHHHHHHhEEecCCCC-CceEEehHHHHHHHHHHHHH---HHhcCCccccCCCchHhHH
Confidence            79999999999999999999999999999997 79999999999999999999   9999999998 99999998

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A

Probab=99.74  E-value=6.4e-20  Score=142.89  Aligned_cols=70  Identities=17%  Similarity=0.191  Sum_probs=68.5

Q ss_pred             CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhh
Q psy10144          3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERE   76 (88)
Q Consensus         3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~   76 (88)
                      +|+++||++++|+||++++++||++||+|+++. +|+++|+|++|+++++...   +++.+|++| |+|+||+|+
T Consensus       232 ~R~~~~Y~i~l~iP~~liv~ls~lsF~Lp~~s~-eRv~LgiT~LLt~tvfl~~---v~~~LP~tS~~vplI~~y~  302 (461)
T 4aq5_A          232 QRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSG-EKMTLSISVLLSLTVFLLV---IVELIPSTSSAVPLIGKYM  302 (461)
T ss_dssp             ECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHCG-GGTTHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCGGGH
T ss_pred             EecccceeeehhhhHHHHHHHHHheEecccccc-ceeehhHHHHHHHHHHHHH---HHhhcCcccCCcCHHHHHH
Confidence            799999999999999999999999999999997 9999999999999999999   999999999 999999998

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E

Probab=99.73  E-value=5.3e-20  Score=144.09  Aligned_cols=71  Identities=18%  Similarity=0.135  Sum_probs=69.2

Q ss_pred             CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCc-hhhhhhhh
Q psy10144          3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQ-IERKGERE   76 (88)
Q Consensus         3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSY-ikaid~~~   76 (88)
                      +|+++||++++|+||++++++||++||+|+++.++|+++|+|++|+++++...   +++.+|++|| +++||+|+
T Consensus       215 rR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~a~~eRvsLgIt~LLt~tvfl~~---v~~~LP~tS~~vPlI~~y~  286 (488)
T 4aq5_E          215 QRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFL---IAQKVPETSLNVPLIGKYL  286 (488)
T ss_dssp             EECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCHHHH
T ss_pred             ccchhheehhHhHHHHHHHHHHHHHhcCCccccCceEEEehHHHHHHHHHHHH---HHhhCCccccCccHHHHHH
Confidence            69999999999999999999999999999998899999999999999999999   9999999998 99999998

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C

Probab=99.71  E-value=2.2e-19  Score=141.61  Aligned_cols=70  Identities=14%  Similarity=0.116  Sum_probs=68.1

Q ss_pred             CccchhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCCc-hhhhhhhh
Q psy10144          3 PNKRGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQ-IERKGERE   76 (88)
Q Consensus         3 ~R~~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSY-ikaid~~~   76 (88)
                      +|+++||++++|+||++++++||++||+|++ .++|+++|+|++|+++++...   +++.+|++|| +++||+|+
T Consensus       243 rR~~~~Yii~l~iP~~liv~Ls~lsF~Lp~d-~~eRisLgIT~LLt~tvfl~~---v~~~LP~tS~~vPlI~~y~  313 (522)
T 4aq5_C          243 RRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLLL---TSQRLPETALAVPLIGKYL  313 (522)
T ss_dssp             EECCSSHHHHHHHHHHHHHHHHHHHTTHHHH-HTTCHHHHHHHHHHHHHHHHH---HHHHHHHHTTTTTCCHHHH
T ss_pred             ecccceeeeehhhHHHHHHHHHHheeecCCC-cCceEEehHHHHHHHHHHHHH---HHhcCCcccCCccHHHHHH
Confidence            7999999999999999999999999999999 689999999999999999999   9999999998 99999998

>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B

Probab=99.67  E-value=1.5e-18  Score=125.47  Aligned_cols=67  Identities=18%  Similarity=0.211  Sum_probs=64.8

Q ss_pred             chhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhh
Q psy10144          6 RGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERE   76 (88)
Q Consensus         6 ~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~   76 (88)
                      +.||++++|+||++++++||++||+|+|+ ++|+++|++++|+++++...   +++.+|++| |++++|.|+
T Consensus         1 pl~Y~~nliiP~~li~~Ls~~~F~Lp~~s-gerv~l~it~lLs~tvfl~~---v~~~lP~tS~~vPli~~y~   68 (227)
T 1oed_A            1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLV---IVELIPSTSSAVPLIGKYM   68 (227)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCTHHH
T ss_pred             CeEEEehHHHHHHHHHHHHHHHheeCCCC-CCeEeehHHHHHHHHHHHHH---HHHhCCCcccccchHHHHH
Confidence            47999999999999999999999999998 69999999999999999999   999999999 999999998

>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1

Probab=99.66  E-value=2e-18  Score=126.93  Aligned_cols=68  Identities=18%  Similarity=0.136  Sum_probs=65.5

Q ss_pred             chhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhh
Q psy10144          6 RGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERE   76 (88)
Q Consensus         6 ~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~   76 (88)
                      +.||++++|+||++++++||++||+|+|+.++|+++|+|++|+++++...   +++.+|++| |+++||+|+
T Consensus         1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~~gerv~l~it~lLs~tvfl~~---~~~~lP~tS~~vPli~~y~   69 (260)
T 1oed_E            1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFL---IAQKVPETSLNVPLIGKYL   69 (260)
T ss_dssp             CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCCSHH
T ss_pred             CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCCeEEeehhHHHHHHHHHHH---HHHhCCCCcccchhHHHHH
Confidence            47999999999999999999999999997789999999999999999999   999999999 999999997

>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B

Probab=99.65  E-value=3.5e-18  Score=125.08  Aligned_cols=67  Identities=21%  Similarity=0.239  Sum_probs=64.8

Q ss_pred             chhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhh
Q psy10144          6 RGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERE   76 (88)
Q Consensus         6 ~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~   76 (88)
                      +.||++++|+||++++++||++||+|+|+ ++|+++|++++|+++++...   +++.+|++| |+++||+|+
T Consensus         1 pl~Y~~nliiP~~li~~ls~~~F~Lp~ds-gerv~l~it~lLs~tvfl~~---v~~~lP~tS~~vPli~~y~   68 (250)
T 1oed_B            1 PLFYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLL---LADKVPETSLSVPIIIRYL   68 (250)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCCTTH
T ss_pred             CeEEEEhHHHHHHHHHHHHHHHheeCCCC-CCeEEehhhHHHHHHHHHHH---HHHHCCCCcccCCcHHHHH
Confidence            47999999999999999999999999998 69999999999999999999   999999999 999999998

>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A

Probab=99.58  E-value=5.6e-17  Score=119.21  Aligned_cols=67  Identities=15%  Similarity=0.143  Sum_probs=64.4

Q ss_pred             chhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhh
Q psy10144          6 RGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERE   76 (88)
Q Consensus         6 ~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~   76 (88)
                      +.||++++++||+++++++|++||+|+|+ ++|+++|+|++|+++++...   +++.+|++| |+++||.|+
T Consensus         1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~-gekv~l~it~lLs~tvfl~~---~~~~lP~tS~~vPli~~y~   68 (260)
T 1oed_C            1 PLFYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLL---TSQRLPETALAVPLIGKYL   68 (260)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCTHHH
T ss_pred             CeEEEEhHHHHHHHHHHHHHHHeeeCCCC-CCeEeehHHHHHHHHHHHHH---HHHHCCCCcccchhHHHHH
Confidence            47999999999999999999999999996 69999999999999999999   999999998 999999998

>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1

Probab=99.35  E-value=2.3e-14  Score=88.85  Aligned_cols=39  Identities=28%  Similarity=0.411  Sum_probs=37.2

Q ss_pred             CCCceeeeeehhhhhhhhccchhhhhhcCCCCCchhhhhhhh
Q psy10144         35 VPGRTTLGVTTLLAVSSQSSGYANIASQTEPTTQIERKGERE   76 (88)
Q Consensus        35 ~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vSYikaid~~~   76 (88)
                      .|||++||++++|+++++..+   .++++|+|||+||+|+|+
T Consensus         1 ~paRv~LGittvLtmtt~~~~---~~~~lPkVSYikAiDvw~   39 (76)
T 1vry_A            1 LPARVGLGITTVLTLTTQSSG---SRASLPKVSYVKAIDIWL   39 (76)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHC---TTTCCCSHHHHHHHHHTH
T ss_pred             CCceEEechHHHHHHHHHhcC---cccCCCCccchHHHHHHH
Confidence            379999999999999999988   999999999999999998

>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1

Probab=97.94  E-value=4.8e-07  Score=45.60  Aligned_cols=28  Identities=39%  Similarity=0.616  Sum_probs=25.8

Q ss_pred             CCCceeeeeehhhhhhhhccchhhhhhcCCC
Q psy10144         35 VPGRTTLGVTTLLAVSSQSSGYANIASQTEP   65 (88)
Q Consensus        35 ~~aRv~LgittlLt~~~~~~~~~~~~~~lP~   65 (88)
                      +|||++||++++|+++++..+   .++++||
T Consensus         1 ~paRv~LGittvLt~tt~~~~---~~~~lPk   28 (28)
T 1mot_A            1 APARVGLGITTVLTMTTQSSG---SRASLPK   28 (28)
T ss_dssp             CCHHHHHHHHHHHHHCCSSSS---SSSSCCC
T ss_pred             CCceEEEcchhHHHHHHHHhh---HhhhCCC
Confidence            379999999999999999998   8889996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	88
d1oede_	260	f.36.1.1 (E:) Acetylcholine receptor protein, gamm	6e-13
d1oedb_	250	f.36.1.1 (B:) Acetylcholine receptor protein, beta	5e-11
d1oedc_	260	f.36.1.1 (C:) Acetylcholine receptor protein, delt	8e-11
d1oeda_	227	f.36.1.1 (A:) Acetylcholine receptor protein, alph	1e-10

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 59.8 bits (144), Expect = 6e-13
 Identities = 9/46 (19%), Positives = 20/46 (43%)

Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANI 59
            P +LI  +  + +++   +   + TL ++ LLA +      A  
Sbjct: 9  IAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQK 54

>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 250

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 54.4 bits (130), Expect = 5e-11
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANI 59
           +P ILI I++ + F++  D+   + +L ++ LLAV+      A+ 
Sbjct: 9  IIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADK 53

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 53.6 bits (128), Expect = 8e-11
 Identities = 9/50 (18%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQT 63
            P +LI  ++ ++F++  +S   + +  ++ LLA +      +    +T
Sbjct: 9  ITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPET 57

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 227

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 53.2 bits (127), Expect = 1e-10
 Identities = 9/46 (19%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 14 YLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANI 59
           +P +L   ++ + F++  DS   + TL ++ LL+++        +
Sbjct: 9  IIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVEL 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	88
d1oede_	260	Acetylcholine receptor protein, gamma chain {Marbl	99.8
d1oeda_	227	Acetylcholine receptor protein, alpha chain {Marbl	99.75
d1oedc_	260	Acetylcholine receptor protein, delta chain {Marbl	99.71
d1oedb_	250	Acetylcholine receptor protein, beta chain {Marble	99.67

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.80  E-value=6.5e-22  Score=139.72  Aligned_cols=68  Identities=18%  Similarity=0.136  Sum_probs=65.9

Q ss_pred             chhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhh
Q psy10144          6 RGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERE   76 (88)
Q Consensus         6 ~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~   76 (88)
                      +.||++++|+||++++++||++||+|+|+.++|++||+|++|+++++...   +++++|++| |++++|+|+
T Consensus         1 PlyY~~~lilP~~li~~ls~~~F~lp~~~~g~Rv~l~it~lLs~~~~~~~---v~~~lP~tS~~vPli~~~~   69 (260)
T d1oede_           1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFL---IAQKVPETSLNVPLIGKYL   69 (260)
T ss_dssp             CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCCSHH
T ss_pred             CcEEEEhHHHHHHHHHHHHHHheEecCCCCCCcEEeehhHHHHHHHHHHH---HHHhCCCccccccHHHHHH
Confidence            57999999999999999999999999999889999999999999999999   999999998 899999998

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.75  E-value=1.3e-20  Score=131.42  Aligned_cols=67  Identities=18%  Similarity=0.211  Sum_probs=64.8

Q ss_pred             chhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhh
Q psy10144          6 RGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERE   76 (88)
Q Consensus         6 ~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~   76 (88)
                      +.||++++++||++++++||++||+|+|+ ++|+++|+|++|+++++...   +++++|++| |++++|+|+
T Consensus         1 plyy~~~li~P~~li~~ls~~~F~lp~~s-~eRi~l~it~lL~~~v~~~~---v~~~lP~tS~~vPli~~y~   68 (227)
T d1oeda_           1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLV---IVELIPSTSSAVPLIGKYM   68 (227)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCTHHH
T ss_pred             CcEEEehHHHHHHHHHHHHHHHheecCCC-CccEEeeHHHHHHHHHHHHH---HHHhCCCcccCcCccchHH
Confidence            57999999999999999999999999998 79999999999999999999   999999998 899999998

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.71  E-value=1.2e-19  Score=127.28  Aligned_cols=67  Identities=15%  Similarity=0.143  Sum_probs=64.8

Q ss_pred             chhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhh
Q psy10144          6 RGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERE   76 (88)
Q Consensus         6 ~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~   76 (88)
                      +.||++++++||++++++||++||+|+|+ ++|+++|+|++|+++++...   +++.+|++| |++.+|+|+
T Consensus         1 pl~y~~n~~~P~~~~~~l~~~~f~lp~~~-~~r~~l~it~lLs~~vf~~~---v~~~lP~tS~~vPli~~y~   68 (260)
T d1oedc_           1 PLFYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLL---TSQRLPETALAVPLIGKYL   68 (260)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCTHHH
T ss_pred             CceEEEhHHHHHHHHHHHHHHHeeeCCCC-CCcEEeeHHHHHHHHHHHHH---HHHhCCCCCCCcchHHHHH
Confidence            57999999999999999999999999998 69999999999999999999   999999998 999999998

>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.67  E-value=5.2e-19  Score=123.99  Aligned_cols=67  Identities=21%  Similarity=0.239  Sum_probs=64.7

Q ss_pred             chhhhHHHHHHHHHHHHHHhhhccccCCCCCCceeeeeehhhhhhhhccchhhhhhcCCCCC-chhhhhhhh
Q psy10144          6 RGLTGRLSYLPTILIVIISWVSFWMDVDSVPGRTTLGVTTLLAVSSQSSGYANIASQTEPTT-QIERKGERE   76 (88)
Q Consensus         6 ~~yyl~~~yiP~~livilSwvsFWi~~~~~~aRv~LgittlLt~~~~~~~~~~~~~~lP~vS-Yikaid~~~   76 (88)
                      +.||++++++||++++++||++||+|+|+ ++|+++|+|++|+++++...   +++.+|++| +++.+|.|+
T Consensus         1 pl~y~~~~~~P~~~i~~l~~~~f~~p~~~-~er~~l~it~lL~~~~~~~~---v~~~~P~~s~~~p~i~~~~   68 (250)
T d1oedb_           1 PLFYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLL---LADKVPETSLSVPIIIRYL   68 (250)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCCCCTTH
T ss_pred             CcEEEEeHHHHHHHHHHHHHHHheecCCC-CCcEEeeHHHHHHHHHHHHH---HHHhCCCCcCcchHHHHHH
Confidence            57999999999999999999999999998 69999999999999999999   999999998 899999998