Psyllid ID: psy10160
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 558 | 2.2.26 [Sep-21-2011] | |||||||
| O17214 | 501 | Probable fumarate hydrata | yes | N/A | 0.392 | 0.437 | 0.812 | 1e-103 | |
| Q7SX99 | 509 | Fumarate hydratase, mitoc | yes | N/A | 0.392 | 0.430 | 0.785 | 1e-100 | |
| P97807 | 507 | Fumarate hydratase, mitoc | yes | N/A | 0.378 | 0.416 | 0.791 | 6e-98 | |
| P14408 | 507 | Fumarate hydratase, mitoc | yes | N/A | 0.378 | 0.416 | 0.786 | 4e-97 | |
| P07954 | 510 | Fumarate hydratase, mitoc | yes | N/A | 0.378 | 0.413 | 0.786 | 5e-97 | |
| Q60HF9 | 510 | Fumarate hydratase, mitoc | N/A | N/A | 0.378 | 0.413 | 0.786 | 5e-97 | |
| P10173 | 466 | Fumarate hydratase, mitoc | yes | N/A | 0.378 | 0.452 | 0.791 | 1e-96 | |
| Q9FI53 | 499 | Fumarate hydratase 2, chl | yes | N/A | 0.396 | 0.442 | 0.764 | 3e-94 | |
| P55250 | 494 | Fumarate hydratase, mitoc | N/A | N/A | 0.397 | 0.449 | 0.743 | 4e-90 | |
| Q54VA2 | 485 | Fumarate hydratase, mitoc | yes | N/A | 0.394 | 0.453 | 0.759 | 7e-90 |
| >sp|O17214|FUMH_CAEEL Probable fumarate hydratase, mitochondrial OS=Caenorhabditis elegans GN=fum-1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 375 bits (962), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/219 (81%), Positives = 196/219 (89%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K AA ++ELTGLPF +APNKFEALAAHDALVEV GALNTVAVS MKI NDIRFL SGPRC
Sbjct: 283 KVAATVSELTGLPFVTAPNKFEALAAHDALVEVHGALNTVAVSFMKIGNDIRFLGSGPRC 342
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGELSLPENEPGSSIMPGKVNPTQCEA+TMVAAQVMGN VAV++GGSNGHFELNVFKPL
Sbjct: 343 GLGELSLPENEPGSSIMPGKVNPTQCEAITMVAAQVMGNQVAVSVGGSNGHFELNVFKPL 402
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
IV NVL+S RL+ADSA +FTD CV GIVAN++NI +++ ESLMLVTALNPHIGYD AAKI
Sbjct: 403 IVRNVLQSTRLLADSAVSFTDHCVDGIVANKDNIAKIMRESLMLVTALNPHIGYDNAAKI 462
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHK GTTL A+KLG LTEE+F +WV PE+MLGPK
Sbjct: 463 AKTAHKNGTTLVQEAVKLGILTEEQFAQWVKPENMLGPK 501
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Caenorhabditis elegans (taxid: 6239) EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 2 |
| >sp|Q7SX99|FUMH_DANRE Fumarate hydratase, mitochondrial OS=Danio rerio GN=fh PE=2 SV=1 | Back alignment and function description |
|---|
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/219 (78%), Positives = 195/219 (89%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K A K++ LTGLPF +A NKFEALAAHDALVE+SGALNTVAVS+MKIANDIRFL SGPR
Sbjct: 291 KVADKVSALTGLPFVTAANKFEALAAHDALVELSGALNTVAVSMMKIANDIRFLGSGPRS 350
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGEL LPENEPGSSIMPGKVNPTQCEA+TMVAAQVMGNHVAVT+GGSNGHFELNVFKP+
Sbjct: 351 GLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVFKPM 410
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
I+ NVL S RL+ D++ +FT+ CV GI AN E I++L+ ESLMLVTALNPHIGYDKAAKI
Sbjct: 411 IIKNVLNSARLLGDASVSFTNNCVVGIEANTERINKLMSESLMLVTALNPHIGYDKAAKI 470
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHK+G+TLK AALKLG+L E++F +WV P DMLGPK
Sbjct: 471 AKTAHKDGSTLKEAALKLGFLNEQQFEEWVRPHDMLGPK 509
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Danio rerio (taxid: 7955) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 |
| >sp|P97807|FUMH_MOUSE Fumarate hydratase, mitochondrial OS=Mus musculus GN=Fh PE=1 SV=3 | Back alignment and function description |
|---|
Score = 358 bits (919), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 167/211 (79%), Positives = 190/211 (90%)
Query: 348 LTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP 407
LTGLPF +APNKFEALAAHDALVE+SGA+NT A SLMKIANDIRFL SGPR GLGEL LP
Sbjct: 297 LTGLPFVTAPNKFEALAAHDALVELSGAMNTAACSLMKIANDIRFLGSGPRSGLGELILP 356
Query: 408 ENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRS 467
ENEPGSSIMPGKVNPTQCEA+TMVAAQVMGNHVAVT+GGSNGHFELNVFKP+++ NVL S
Sbjct: 357 ENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVFKPMMIKNVLHS 416
Query: 468 IRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEG 527
RL+ D++ +FTD CV GI AN E I++L++ESLMLVTALNPHIGYDKAAKIAKTAHK G
Sbjct: 417 ARLLGDASVSFTDNCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNG 476
Query: 528 TTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
+TLK A++LGYLT E+F++WV P+DMLGPK
Sbjct: 477 STLKETAIELGYLTAEQFDEWVKPKDMLGPK 507
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Mus musculus (taxid: 10090) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 |
| >sp|P14408|FUMH_RAT Fumarate hydratase, mitochondrial OS=Rattus norvegicus GN=Fh PE=1 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (912), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 166/211 (78%), Positives = 190/211 (90%)
Query: 348 LTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP 407
LTGLPF +APNKFEALAAHDALVE+SGA+NT A SLMKIANDIRFL SGPR GLGEL LP
Sbjct: 297 LTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILP 356
Query: 408 ENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRS 467
ENEPGSSIMPGKVNPTQCEA+TMVAAQVMGNHVAVT+GGSNGHFELNVFKP+++ NVL S
Sbjct: 357 ENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVFKPMMIKNVLHS 416
Query: 468 IRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEG 527
RL+ D++ +FT+ CV GI AN E I++L++ESLMLVTALNPHIGYDKAAKIAKTAHK G
Sbjct: 417 ARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNG 476
Query: 528 TTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
+TLK A++LGYLT E+F++WV P+DMLGPK
Sbjct: 477 STLKKTAIELGYLTAEQFDEWVKPKDMLGPK 507
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Rattus norvegicus (taxid: 10116) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 |
| >sp|P07954|FUMH_HUMAN Fumarate hydratase, mitochondrial OS=Homo sapiens GN=FH PE=1 SV=3 | Back alignment and function description |
|---|
Score = 355 bits (911), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 166/211 (78%), Positives = 190/211 (90%)
Query: 348 LTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP 407
LTGLPF +APNKFEALAAHDALVE+SGA+NT A SLMKIANDIRFL SGPR GLGEL LP
Sbjct: 300 LTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILP 359
Query: 408 ENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRS 467
ENEPGSSIMPGKVNPTQCEA+TMVAAQVMGNHVAVT+GGSNGHFELNVFKP+++ NVL S
Sbjct: 360 ENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVFKPMMIKNVLHS 419
Query: 468 IRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEG 527
RL+ D++ +FT+ CV GI AN E I++L++ESLMLVTALNPHIGYDKAAKIAKTAHK G
Sbjct: 420 ARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNG 479
Query: 528 TTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
+TLK A++LGYLT E+F++WV P+DMLGPK
Sbjct: 480 STLKETAIELGYLTAEQFDEWVKPKDMLGPK 510
|
Also acts as a tumor suppressor. Homo sapiens (taxid: 9606) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q60HF9|FUMH_MACFA Fumarate hydratase, mitochondrial OS=Macaca fascicularis GN=FH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (911), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 166/211 (78%), Positives = 190/211 (90%)
Query: 348 LTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP 407
LTGLPF +APNKFEALAAHDALVE+SGA+NT A SLMKIANDIRFL SGPR GLGEL LP
Sbjct: 300 LTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILP 359
Query: 408 ENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRS 467
ENEPGSSIMPGKVNPTQCEA+TMVAAQVMGNHVAVT+GGSNGHFELNVFKP+++ NVL S
Sbjct: 360 ENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVFKPMMIKNVLHS 419
Query: 468 IRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEG 527
RL+ D++ +FT+ CV GI AN E I++L++ESLMLVTALNPHIGYDKAAKIAKTAHK G
Sbjct: 420 ARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNG 479
Query: 528 TTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
+TLK A++LGYLT E+F++WV P+DMLGPK
Sbjct: 480 STLKETAIELGYLTAEQFDEWVKPKDMLGPK 510
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Macaca fascicularis (taxid: 9541) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 |
| >sp|P10173|FUMH_PIG Fumarate hydratase, mitochondrial OS=Sus scrofa GN=FH PE=1 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (908), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 167/211 (79%), Positives = 187/211 (88%)
Query: 348 LTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP 407
LTGLPF +APN FEALAAHDALVE SGA+NT A SLMKIANDIRFL SGPR GLGEL LP
Sbjct: 256 LTGLPFVTAPNNFEALAAHDALVEHSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILP 315
Query: 408 ENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRS 467
ENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVT+GGSNGHFELNVFKP+++ NVL S
Sbjct: 316 ENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPMMIKNVLHS 375
Query: 468 IRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEG 527
RL+ D+A +FT+ CV GI AN E I++L++ESLMLVTALNPHIGYDKAAKIAKTAHK G
Sbjct: 376 ARLLGDAAVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNG 435
Query: 528 TTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
+TLK A++LGYLT E+F++WV P DMLGPK
Sbjct: 436 STLKATAVELGYLTAEQFDEWVKPRDMLGPK 466
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Sus scrofa (taxid: 9823) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q9FI53|FUM2_ARATH Fumarate hydratase 2, chloroplastic OS=Arabidopsis thaliana GN=FUM2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 346 bits (887), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 169/221 (76%), Positives = 185/221 (83%)
Query: 337 LETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASG 396
+ K AA +AE T LPF +A NKFEALAAHDA VE SG+LNT+A SLMKIANDIRFL SG
Sbjct: 277 FDVKIAAAVAEETNLPFVTAENKFEALAAHDACVETSGSLNTIATSLMKIANDIRFLGSG 336
Query: 397 PRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVF 456
PRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMV AQVMGNHVAVTIGGSNGHFELNVF
Sbjct: 337 PRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTIGGSNGHFELNVF 396
Query: 457 KPLIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKA 516
KP+I S +L SIRLIAD++ +F CV GI AN E I +LLHESLMLVT+LNP IGYD A
Sbjct: 397 KPVIASALLHSIRLIADASASFEKNCVRGIEANRERISKLLHESLMLVTSLNPKIGYDNA 456
Query: 517 AKIAKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGP 557
A +AK AHKEG TLK AA+KLG LT EEF+ VVPE M+GP
Sbjct: 457 AAVAKRAHKEGCTLKHAAMKLGVLTSEEFDTLVVPEKMIGP 497
|
Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 |
| >sp|P55250|FUMH_RHIOR Fumarate hydratase, mitochondrial OS=Rhizopus oryzae GN=FUMR PE=3 SV=1 | Back alignment and function description |
|---|
Score = 332 bits (852), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 165/222 (74%), Positives = 191/222 (86%)
Query: 337 LETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASG 396
+ K A IA +TGLPFK+APNKFEALAAHDALVE GALNTVA SLMKIANDIR+L SG
Sbjct: 272 FDAKVAEAIASITGLPFKTAPNKFEALAAHDALVEAHGALNTVACSLMKIANDIRYLGSG 331
Query: 397 PRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVF 456
PRCGLGELSLPENEPGSSIMPGKVNPTQCEA+TMV AQVMGN+ A+++ GSNG FELNVF
Sbjct: 332 PRCGLGELSLPENEPGSSIMPGKVNPTQCEAMTMVCAQVMGNNTAISVAGSNGQFELNVF 391
Query: 457 KPLIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKA 516
KP+++ N+++SIRLI+D++ +FT CV GI ANE+ I +++ESLMLVTALNPHIGYDKA
Sbjct: 392 KPVMIKNLIQSIRLISDASISFTKNCVVGIEANEKKISSIMNESLMLVTALNPHIGYDKA 451
Query: 517 AKIAKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AK AK AHKEGTTLK AAL LGYLT EEF++WV PEDM+ K
Sbjct: 452 AKCAKKAHKEGTTLKEAALSLGYLTSEEFDQWVRPEDMISAK 493
|
Rhizopus oryzae (taxid: 64495) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q54VA2|FUMH_DICDI Fumarate hydratase, mitochondrial OS=Dictyostelium discoideum GN=fumH PE=3 SV=1 | Back alignment and function description |
|---|
Score = 332 bits (850), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 167/220 (75%), Positives = 189/220 (85%)
Query: 337 LETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASG 396
+ A+++A+ TGLPFK+APNKFEALAAHDA+VEVSGALNTVAVSLMKIANDIRFL SG
Sbjct: 263 FDVDIASEVAKFTGLPFKTAPNKFEALAAHDAMVEVSGALNTVAVSLMKIANDIRFLGSG 322
Query: 397 PRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVF 456
PRCGLGEL LPENEPGSSIMPGKVNPTQCEA+TMV AQVMGN+ V+I GSNGHFELNVF
Sbjct: 323 PRCGLGELILPENEPGSSIMPGKVNPTQCEAMTMVCAQVMGNNTTVSIAGSNGHFELNVF 382
Query: 457 KPLIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKA 516
KP+I+ NVL SIRLIAD++ +FT CV GI A+E+ I +LLHESLMLVTALNP+IGYDKA
Sbjct: 383 KPVIIKNVLSSIRLIADASVSFTKHCVVGIKADEKRIDQLLHESLMLVTALNPYIGYDKA 442
Query: 517 AKIAKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLG 556
AK AK AHKE TTLK A L LG+ T EEF+KWV P M+G
Sbjct: 443 AKAAKKAHKEKTTLKEACLSLGFTTSEEFDKWVDPSKMIG 482
|
Dictyostelium discoideum (taxid: 44689) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 558 | ||||||
| 321474099 | 467 | hypothetical protein DAPPUDRAFT_46417 [D | 0.392 | 0.468 | 0.867 | 1e-108 | |
| 91084043 | 497 | PREDICTED: similar to AGAP001884-PA [Tri | 0.392 | 0.440 | 0.840 | 1e-105 | |
| 157118058 | 503 | aspartate ammonia lyase [Aedes aegypti] | 0.392 | 0.435 | 0.840 | 1e-104 | |
| 427789355 | 502 | Putative fumarase [Rhipicephalus pulchel | 0.392 | 0.436 | 0.831 | 1e-103 | |
| 157118060 | 435 | aspartate ammonia lyase [Aedes aegypti] | 0.392 | 0.503 | 0.840 | 1e-103 | |
| 289743205 | 495 | fumarase [Glossina morsitans morsitans] | 0.392 | 0.442 | 0.817 | 1e-103 | |
| 347966750 | 503 | AGAP001884-PA [Anopheles gambiae str. PE | 0.392 | 0.435 | 0.835 | 1e-102 | |
| 195133009 | 496 | GI21814 [Drosophila mojavensis] gi|19390 | 0.392 | 0.441 | 0.817 | 1e-102 | |
| 194896387 | 495 | GG19604 [Drosophila erecta] gi|190650118 | 0.392 | 0.442 | 0.821 | 1e-102 | |
| 24640177 | 495 | lethal (1) G0255, isoform A [Drosophila | 0.392 | 0.442 | 0.821 | 1e-102 |
| >gi|321474099|gb|EFX85065.1| hypothetical protein DAPPUDRAFT_46417 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/219 (86%), Positives = 207/219 (94%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K AA+++ELTGLPF +APNKFEALA+HDALV++SG+LNTVAVSLMKIANDIRFLASGPRC
Sbjct: 249 KVAARVSELTGLPFVTAPNKFEALASHDALVQMSGSLNTVAVSLMKIANDIRFLASGPRC 308
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGELSLPENEPGSSIMPGKVNPTQCEA+TMVAAQVMGNHVAVTIGGSNGHFELNVFKPL
Sbjct: 309 GLGELSLPENEPGSSIMPGKVNPTQCEAITMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 368
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
IVSNVLRSIRL+ADS+ AFT CV GI AN + I++LLHESLMLVTALNPHIGYDKAAKI
Sbjct: 369 IVSNVLRSIRLLADSSNAFTKNCVVGIEANRDRINKLLHESLMLVTALNPHIGYDKAAKI 428
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHKEG+TLK ALKLGYLTEE+FN+WV PEDMLGPK
Sbjct: 429 AKTAHKEGSTLKETALKLGYLTEEQFNQWVKPEDMLGPK 467
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91084043|ref|XP_967085.1| PREDICTED: similar to AGAP001884-PA [Tribolium castaneum] gi|270006696|gb|EFA03144.1| hypothetical protein TcasGA2_TC013056 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/219 (84%), Positives = 203/219 (92%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
KCAA+I++LTGLPF SAPNKFEALAAHDALVEVSGALN VA S+MKIANDIRFLASGPRC
Sbjct: 279 KCAAEISKLTGLPFTSAPNKFEALAAHDALVEVSGALNVVACSIMKIANDIRFLASGPRC 338
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGELSLPENEPGSSIMPGKVNPTQCEA+TMVAAQVMGNHVAVTIGGSNGHFELNVFKP+
Sbjct: 339 GLGELSLPENEPGSSIMPGKVNPTQCEAITMVAAQVMGNHVAVTIGGSNGHFELNVFKPM 398
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
+V+NVLRSIRL+ DS+ AFT CV GIVAN++ I +LLHESLMLVTALNPHIGYDKAA+I
Sbjct: 399 MVANVLRSIRLLGDSSKAFTTNCVDGIVANKDRIDKLLHESLMLVTALNPHIGYDKAAQI 458
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHKE +TLK A+KLG LTEE+F +WV PE+MLGPK
Sbjct: 459 AKTAHKENSTLKETAIKLGILTEEQFKEWVKPEEMLGPK 497
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157118058|ref|XP_001658987.1| aspartate ammonia lyase [Aedes aegypti] gi|108875839|gb|EAT40064.1| AAEL008167-PB [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/219 (84%), Positives = 200/219 (91%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
KCAAKIAELT LPF +APNKFEALAA DA+VEVSG LNT+AVS MKIANDIRFL SGPRC
Sbjct: 285 KCAAKIAELTSLPFVTAPNKFEALAARDAMVEVSGCLNTIAVSCMKIANDIRFLGSGPRC 344
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGELSLPENEPGSSIMPGKVNPTQCEA+TMV AQVMGN+VAVT+GGSNGHFELNVFKPL
Sbjct: 345 GLGELSLPENEPGSSIMPGKVNPTQCEAMTMVCAQVMGNNVAVTVGGSNGHFELNVFKPL 404
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
+VSNVLRSIRL++DSA FT CV GI AN NI ++++ESLMLVTALNPHIGYDKAAKI
Sbjct: 405 VVSNVLRSIRLLSDSARTFTKNCVVGIEANRANIDKIMNESLMLVTALNPHIGYDKAAKI 464
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHKEGTTLK AAL LGYLTEE+FN+WV PE+MLGPK
Sbjct: 465 AKTAHKEGTTLKQAALNLGYLTEEQFNEWVRPENMLGPK 503
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|427789355|gb|JAA60129.1| Putative fumarase [Rhipicephalus pulchellus] | Back alignment and taxonomy information |
|---|
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/219 (83%), Positives = 201/219 (91%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K A K+++ TGLPF +APNKFEALAA+DA+VEVSGALN +A SLMKIANDIRFL SGPRC
Sbjct: 284 KVAEKVSQFTGLPFVTAPNKFEALAANDAMVEVSGALNVLACSLMKIANDIRFLGSGPRC 343
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
G GELSLPENEPGSSIMPGKVNPTQCEA+TMVA QVMGNHVAVT+GGSNGHFELNVFKPL
Sbjct: 344 GFGELSLPENEPGSSIMPGKVNPTQCEAVTMVACQVMGNHVAVTVGGSNGHFELNVFKPL 403
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
IVSNVLRS+RL+ADS+ +FTD CV GIV NEE I +LL+ESLMLVTALNPHIGYDKAAKI
Sbjct: 404 IVSNVLRSVRLLADSSVSFTDHCVVGIVPNEERISKLLNESLMLVTALNPHIGYDKAAKI 463
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHKEGTTLK +A+KLGYLT EEF+KWV P+DMLGPK
Sbjct: 464 AKTAHKEGTTLKESAIKLGYLTAEEFDKWVQPKDMLGPK 502
|
Source: Rhipicephalus pulchellus Species: Rhipicephalus pulchellus Genus: Rhipicephalus Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157118060|ref|XP_001658988.1| aspartate ammonia lyase [Aedes aegypti] gi|108875840|gb|EAT40065.1| AAEL008167-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/219 (84%), Positives = 200/219 (91%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
KCAAKIAELT LPF +APNKFEALAA DA+VEVSG LNT+AVS MKIANDIRFL SGPRC
Sbjct: 217 KCAAKIAELTSLPFVTAPNKFEALAARDAMVEVSGCLNTIAVSCMKIANDIRFLGSGPRC 276
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGELSLPENEPGSSIMPGKVNPTQCEA+TMV AQVMGN+VAVT+GGSNGHFELNVFKPL
Sbjct: 277 GLGELSLPENEPGSSIMPGKVNPTQCEAMTMVCAQVMGNNVAVTVGGSNGHFELNVFKPL 336
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
+VSNVLRSIRL++DSA FT CV GI AN NI ++++ESLMLVTALNPHIGYDKAAKI
Sbjct: 337 VVSNVLRSIRLLSDSARTFTKNCVVGIEANRANIDKIMNESLMLVTALNPHIGYDKAAKI 396
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHKEGTTLK AAL LGYLTEE+FN+WV PE+MLGPK
Sbjct: 397 AKTAHKEGTTLKQAALNLGYLTEEQFNEWVRPENMLGPK 435
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|289743205|gb|ADD20350.1| fumarase [Glossina morsitans morsitans] | Back alignment and taxonomy information |
|---|
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/219 (81%), Positives = 198/219 (90%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
KCAAKIA+LTGLPF +APNKFEALAA DA+VEV G LNT+AVSLMKI NDIRFL SGPRC
Sbjct: 277 KCAAKIAQLTGLPFVTAPNKFEALAARDAMVEVHGILNTIAVSLMKIGNDIRFLGSGPRC 336
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGELSLPENEPGSSIMPGKVNPTQCE+LTM+AAQVMGNHVAVT+GGSNGHFELNVFKPL
Sbjct: 337 GLGELSLPENEPGSSIMPGKVNPTQCESLTMLAAQVMGNHVAVTVGGSNGHFELNVFKPL 396
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
+VSNVLRSIRL++D + FT CV GI AN + I ++++ESLMLVTALNPHIGYDKAAKI
Sbjct: 397 VVSNVLRSIRLLSDGSRTFTANCVQGIKANTDRISKIMNESLMLVTALNPHIGYDKAAKI 456
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHK GTTLK A+KLG+LTEE+FN WV PEDMLGPK
Sbjct: 457 AKTAHKNGTTLKEEAIKLGFLTEEQFNNWVKPEDMLGPK 495
|
Source: Glossina morsitans morsitans Species: Glossina morsitans Genus: Glossina Family: Glossinidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|347966750|ref|XP_321179.4| AGAP001884-PA [Anopheles gambiae str. PEST] gi|333469915|gb|EAA01733.4| AGAP001884-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/219 (83%), Positives = 199/219 (90%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K AAKI ELTGLPF SAPNKFEALAA DA+VEVSG LNT+AVS MKIANDIRFL SGPRC
Sbjct: 285 KVAAKIGELTGLPFVSAPNKFEALAARDAMVEVSGCLNTIAVSCMKIANDIRFLGSGPRC 344
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGELSLPENEPGSSIMPGKVNPTQCEA+TMV AQVMGN+VAVT+GGSNGHFELNVFKPL
Sbjct: 345 GLGELSLPENEPGSSIMPGKVNPTQCEAMTMVCAQVMGNNVAVTVGGSNGHFELNVFKPL 404
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
+VSNVLRSIRL++DSA FT CV GI AN NI ++++ESLMLVTALNPHIGYDKAAKI
Sbjct: 405 VVSNVLRSIRLLSDSARTFTKNCVVGIEANRANIDKIMNESLMLVTALNPHIGYDKAAKI 464
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHKEGTTLK +ALKLGYLTEE+F +WV PE+MLGPK
Sbjct: 465 AKTAHKEGTTLKQSALKLGYLTEEQFAEWVRPENMLGPK 503
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195133009|ref|XP_002010932.1| GI21814 [Drosophila mojavensis] gi|193907720|gb|EDW06587.1| GI21814 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/219 (81%), Positives = 199/219 (90%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
KCAAKIA+LTGLPF +APNKFEALAA DA+VEV G LNT+AVSLMKI NDIRFL SGPRC
Sbjct: 278 KCAAKIAQLTGLPFVTAPNKFEALAARDAMVEVHGVLNTIAVSLMKIGNDIRFLGSGPRC 337
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGELSLPENEPGSSIMPGKVNPTQCE+LTM+AAQVMGN VAVTIGG+NGHFELNVFKPL
Sbjct: 338 GLGELSLPENEPGSSIMPGKVNPTQCESLTMLAAQVMGNQVAVTIGGANGHFELNVFKPL 397
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
IVSNVLRSIRL++D + FT CV+GI AN+ENI ++++ESLMLVTALNPHIGYDKAAKI
Sbjct: 398 IVSNVLRSIRLLSDGSRTFTANCVNGIKANKENIAKIMNESLMLVTALNPHIGYDKAAKI 457
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHK GTTLK A+ LGYLTE++FN WV PE+MLGPK
Sbjct: 458 AKTAHKNGTTLKEEAINLGYLTEQQFNDWVRPEEMLGPK 496
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194896387|ref|XP_001978469.1| GG19604 [Drosophila erecta] gi|190650118|gb|EDV47396.1| GG19604 [Drosophila erecta] | Back alignment and taxonomy information |
|---|
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/219 (82%), Positives = 197/219 (89%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
KCAAKIAELT LPF +APNKFEALAA DA+VEV G LNT+AVSLMKIANDIRFL SGPRC
Sbjct: 277 KCAAKIAELTSLPFVTAPNKFEALAARDAMVEVHGVLNTIAVSLMKIANDIRFLGSGPRC 336
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGELSLPENEPGSSIMPGKVNPTQCE+LTM++AQVMGN VAVTIGGSNGHFELNVFKPL
Sbjct: 337 GLGELSLPENEPGSSIMPGKVNPTQCESLTMLSAQVMGNQVAVTIGGSNGHFELNVFKPL 396
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
IVSNVLRSIRL++D + FT CV+GI AN ENI ++++ESLMLVTALNPHIGYDKAAKI
Sbjct: 397 IVSNVLRSIRLLSDGSRTFTANCVNGIQANRENIAKIMNESLMLVTALNPHIGYDKAAKI 456
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHK GTTLK A+ LGYLTE++FN WV PE MLGPK
Sbjct: 457 AKTAHKNGTTLKEEAINLGYLTEQQFNDWVRPEQMLGPK 495
|
Source: Drosophila erecta Species: Drosophila erecta Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|24640177|ref|NP_572339.1| lethal (1) G0255, isoform A [Drosophila melanogaster] gi|195340303|ref|XP_002036753.1| GM12511 [Drosophila sechellia] gi|22831834|gb|AAF46186.3| lethal (1) G0255, isoform A [Drosophila melanogaster] gi|194130869|gb|EDW52912.1| GM12511 [Drosophila sechellia] gi|329112611|gb|AEB72009.1| FI05334p [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/219 (82%), Positives = 197/219 (89%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
KCAAKIAELT LPF +APNKFEALAA DA+VEV G LNT+AVSLMKIANDIRFL SGPRC
Sbjct: 277 KCAAKIAELTSLPFVTAPNKFEALAARDAMVEVHGVLNTIAVSLMKIANDIRFLGSGPRC 336
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGELSLPENEPGSSIMPGKVNPTQCE+LTM++AQVMGN VAVTIGGSNGHFELNVFKPL
Sbjct: 337 GLGELSLPENEPGSSIMPGKVNPTQCESLTMLSAQVMGNQVAVTIGGSNGHFELNVFKPL 396
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
IVSNVLRSIRL++D + FT CV+GI AN ENI ++++ESLMLVTALNPHIGYDKAAKI
Sbjct: 397 IVSNVLRSIRLLSDGSRTFTANCVNGIQANRENIAKIMNESLMLVTALNPHIGYDKAAKI 456
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHK GTTLK A+ LGYLTE++FN WV PE MLGPK
Sbjct: 457 AKTAHKNGTTLKEEAINLGYLTEQQFNDWVRPEQMLGPK 495
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 558 | ||||||
| FB|FBgn0028336 | 495 | l(1)G0255 "lethal (1) G0255" [ | 0.392 | 0.442 | 0.821 | 2.1e-93 | |
| WB|WBGene00001503 | 501 | fum-1 [Caenorhabditis elegans | 0.392 | 0.437 | 0.812 | 3.9e-92 | |
| UNIPROTKB|Q5ZLD1 | 507 | FH "Uncharacterized protein" [ | 0.392 | 0.431 | 0.799 | 6.3e-92 | |
| UNIPROTKB|E2RGR9 | 508 | FH "Uncharacterized protein" [ | 0.392 | 0.431 | 0.789 | 7.3e-91 | |
| MGI|MGI:95530 | 507 | Fh1 "fumarate hydratase 1" [Mu | 0.392 | 0.431 | 0.785 | 7.3e-91 | |
| UNIPROTKB|P07954 | 510 | FH "Fumarate hydratase, mitoch | 0.392 | 0.429 | 0.780 | 1.9e-90 | |
| RGD|2614 | 507 | Fh "fumarate hydratase" [Rattu | 0.392 | 0.431 | 0.780 | 1.9e-90 | |
| UNIPROTKB|Q5M964 | 507 | Fh "Protein Fh1" [Rattus norve | 0.392 | 0.431 | 0.780 | 1.9e-90 | |
| UNIPROTKB|Q148D3 | 510 | FH "Fumarate hydratase" [Bos t | 0.392 | 0.429 | 0.780 | 2.5e-90 | |
| UNIPROTKB|P10173 | 466 | FH "Fumarate hydratase, mitoch | 0.392 | 0.469 | 0.785 | 5.1e-90 |
| FB|FBgn0028336 l(1)G0255 "lethal (1) G0255" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 180/219 (82%), Positives = 197/219 (89%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
KCAAKIAELT LPF +APNKFEALAA DA+VEV G LNT+AVSLMKIANDIRFL SGPRC
Sbjct: 277 KCAAKIAELTSLPFVTAPNKFEALAARDAMVEVHGVLNTIAVSLMKIANDIRFLGSGPRC 336
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGELSLPENEPGSSIMPGKVNPTQCE+LTM++AQVMGN VAVTIGGSNGHFELNVFKPL
Sbjct: 337 GLGELSLPENEPGSSIMPGKVNPTQCESLTMLSAQVMGNLVAVTIGGSNGHFELNVFKPL 396
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
IVSNVLRSIRL++D + FT CV+GI AN ENI ++++ESLMLVTALNPHIGYDKAAKI
Sbjct: 397 IVSNVLRSIRLLSDGSRTFTANCVNGIQANRENIAKIMNESLMLVTALNPHIGYDKAAKI 456
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHK GTTLK A+ LGYLTE++FN WV PE MLGPK
Sbjct: 457 AKTAHKNGTTLKEEAINLGYLTEQQFNDWVRPEQMLGPK 495
|
|
| WB|WBGene00001503 fum-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
Identities = 178/219 (81%), Positives = 196/219 (89%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K AA ++ELTGLPF +APNKFEALAAHDALVEV GALNTVAVS MKI NDIRFL SGPRC
Sbjct: 283 KVAATVSELTGLPFVTAPNKFEALAAHDALVEVHGALNTVAVSFMKIGNDIRFLGSGPRC 342
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGELSLPENEPGSSIMPGKVNPTQCEA+TMVAAQVMGN VAV++GGSNGHFELNVFKPL
Sbjct: 343 GLGELSLPENEPGSSIMPGKVNPTQCEAITMVAAQVMGNQVAVSVGGSNGHFELNVFKPL 402
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
IV NVL+S RL+ADSA +FTD CV GIVAN++NI +++ ESLMLVTALNPHIGYD AAKI
Sbjct: 403 IVRNVLQSTRLLADSAVSFTDHCVDGIVANKDNIAKIMRESLMLVTALNPHIGYDNAAKI 462
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHK GTTL A+KLG LTEE+F +WV PE+MLGPK
Sbjct: 463 AKTAHKNGTTLVQEAVKLGILTEEQFAQWVKPENMLGPK 501
|
|
| UNIPROTKB|Q5ZLD1 FH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 175/219 (79%), Positives = 197/219 (89%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K AAK+AELTGLPF +APNKFEALAAHDALVE+SGA+NTVA SLMKIANDIRFL SGPR
Sbjct: 289 KVAAKVAELTGLPFVTAPNKFEALAAHDALVELSGAMNTVACSLMKIANDIRFLGSGPRS 348
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGEL LPENEPGSSIMPGKVNPTQCEA+TMVAAQVMGNHVAVT+GGSNGHFELNVFKP+
Sbjct: 349 GLGELILPENEPGSSIMPGKVNPTQCEAVTMVAAQVMGNHVAVTVGGSNGHFELNVFKPM 408
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
++ NVL S RL+ D +FTD CV GI AN + I++L+ ESLMLVTALNPHIGYDKAAKI
Sbjct: 409 MIKNVLNSARLLGDVCVSFTDNCVVGIQANTDRINKLMSESLMLVTALNPHIGYDKAAKI 468
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHKEGTTLK AA+KLG+LT E+F++WV P+DMLGP+
Sbjct: 469 AKTAHKEGTTLKEAAIKLGFLTSEQFDQWVKPKDMLGPQ 507
|
|
| UNIPROTKB|E2RGR9 FH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 906 (324.0 bits), Expect = 7.3e-91, P = 7.3e-91
Identities = 173/219 (78%), Positives = 194/219 (88%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K AAK+A LTGLPF +APNKFEALAAHDALVE+SGA+NT A SLMKIANDIRFL SGPR
Sbjct: 290 KVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRS 349
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGEL LPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVT+GGSNGHFELNVFKP+
Sbjct: 350 GLGELILPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPM 409
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
++ NVL S RL+ D+A +FT+ CV GI AN E I +L+ ESLMLVTALNPHIGYDKAAKI
Sbjct: 410 MIKNVLHSARLLGDAAVSFTENCVMGIQANTERISKLMSESLMLVTALNPHIGYDKAAKI 469
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHK G+TLK A++LGYLT E+F++WV P+DMLGPK
Sbjct: 470 AKTAHKNGSTLKATAIELGYLTAEQFDEWVKPKDMLGPK 508
|
|
| MGI|MGI:95530 Fh1 "fumarate hydratase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 906 (324.0 bits), Expect = 7.3e-91, P = 7.3e-91
Identities = 172/219 (78%), Positives = 196/219 (89%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K AAK+A LTGLPF +APNKFEALAAHDALVE+SGA+NT A SLMKIANDIRFL SGPR
Sbjct: 289 KVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTAACSLMKIANDIRFLGSGPRS 348
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGEL LPENEPGSSIMPGKVNPTQCEA+TMVAAQVMGNHVAVT+GGSNGHFELNVFKP+
Sbjct: 349 GLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVFKPM 408
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
++ NVL S RL+ D++ +FTD CV GI AN E I++L++ESLMLVTALNPHIGYDKAAKI
Sbjct: 409 MIKNVLHSARLLGDASVSFTDNCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKI 468
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHK G+TLK A++LGYLT E+F++WV P+DMLGPK
Sbjct: 469 AKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGPK 507
|
|
| UNIPROTKB|P07954 FH "Fumarate hydratase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
Identities = 171/219 (78%), Positives = 196/219 (89%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K AAK+A LTGLPF +APNKFEALAAHDALVE+SGA+NT A SLMKIANDIRFL SGPR
Sbjct: 292 KVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRS 351
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGEL LPENEPGSSIMPGKVNPTQCEA+TMVAAQVMGNHVAVT+GGSNGHFELNVFKP+
Sbjct: 352 GLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVFKPM 411
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
++ NVL S RL+ D++ +FT+ CV GI AN E I++L++ESLMLVTALNPHIGYDKAAKI
Sbjct: 412 MIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKI 471
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHK G+TLK A++LGYLT E+F++WV P+DMLGPK
Sbjct: 472 AKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGPK 510
|
|
| RGD|2614 Fh "fumarate hydratase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
Identities = 171/219 (78%), Positives = 196/219 (89%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K AAK+A LTGLPF +APNKFEALAAHDALVE+SGA+NT A SLMKIANDIRFL SGPR
Sbjct: 289 KVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRS 348
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGEL LPENEPGSSIMPGKVNPTQCEA+TMVAAQVMGNHVAVT+GGSNGHFELNVFKP+
Sbjct: 349 GLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVFKPM 408
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
++ NVL S RL+ D++ +FT+ CV GI AN E I++L++ESLMLVTALNPHIGYDKAAKI
Sbjct: 409 MIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKI 468
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHK G+TLK A++LGYLT E+F++WV P+DMLGPK
Sbjct: 469 AKTAHKNGSTLKKTAIELGYLTAEQFDEWVKPKDMLGPK 507
|
|
| UNIPROTKB|Q5M964 Fh "Protein Fh1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
Identities = 171/219 (78%), Positives = 196/219 (89%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K AAK+A LTGLPF +APNKFEALAAHDALVE+SGA+NT A SLMKIANDIRFL SGPR
Sbjct: 289 KVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRS 348
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGEL LPENEPGSSIMPGKVNPTQCEA+TMVAAQVMGNHVAVT+GGSNGHFELNVFKP+
Sbjct: 349 GLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVFKPM 408
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
++ NVL S RL+ D++ +FT+ CV GI AN E I++L++ESLMLVTALNPHIGYDKAAKI
Sbjct: 409 MIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKI 468
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHK G+TLK A++LGYLT E+F++WV P+DMLGPK
Sbjct: 469 AKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGPK 507
|
|
| UNIPROTKB|Q148D3 FH "Fumarate hydratase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
Identities = 171/219 (78%), Positives = 195/219 (89%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K AAK+A LTGLPF +APNKFEALAAHDALVE+SGA+NT A SLMKIANDIRFL SGPR
Sbjct: 292 KVAAKVAVLTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRS 351
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGEL LPENEPGSSIMPGKVNPTQCEA+TMVAAQVMGNHVAVT+GGSNGHFELNVFKP+
Sbjct: 352 GLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVFKPM 411
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
++ NVL S RL+ D++ +FT+ CV GI AN E I +L++ESLMLVTALNPHIGYDKAAKI
Sbjct: 412 MIKNVLHSARLLGDASVSFTENCVVGIQANTERISKLMNESLMLVTALNPHIGYDKAAKI 471
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHK G+TLK A++LGYLT E+F++WV P+DMLGPK
Sbjct: 472 AKTAHKNGSTLKATAIELGYLTAEQFDEWVKPKDMLGPK 510
|
|
| UNIPROTKB|P10173 FH "Fumarate hydratase, mitochondrial" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
Identities = 172/219 (78%), Positives = 193/219 (88%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K AAK+A LTGLPF +APN FEALAAHDALVE SGA+NT A SLMKIANDIRFL SGPR
Sbjct: 248 KVAAKVAALTGLPFVTAPNNFEALAAHDALVEHSGAMNTTACSLMKIANDIRFLGSGPRS 307
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGEL LPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVT+GGSNGHFELNVFKP+
Sbjct: 308 GLGELILPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPM 367
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
++ NVL S RL+ D+A +FT+ CV GI AN E I++L++ESLMLVTALNPHIGYDKAAKI
Sbjct: 368 MIKNVLHSARLLGDAAVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKI 427
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHK G+TLK A++LGYLT E+F++WV P DMLGPK
Sbjct: 428 AKTAHKNGSTLKATAVELGYLTAEQFDEWVKPRDMLGPK 466
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6GFK5 | FUMC_STAAR | 4, ., 2, ., 1, ., 2 | 0.6284 | 0.3906 | 0.4728 | yes | N/A |
| Q49YP8 | FUMC_STAS1 | 4, ., 2, ., 1, ., 2 | 0.6347 | 0.3924 | 0.4750 | yes | N/A |
| Q9ZCQ4 | FUMC_RICPR | 4, ., 2, ., 1, ., 2 | 0.7123 | 0.3924 | 0.4750 | yes | N/A |
| Q8UEY7 | FUMC_AGRT5 | 4, ., 2, ., 1, ., 2 | 0.6347 | 0.3924 | 0.4730 | yes | N/A |
| Q92PB6 | FUMC_RHIME | 4, ., 2, ., 1, ., 2 | 0.6743 | 0.3906 | 0.4708 | yes | N/A |
| Q8DIP7 | FUMC_THEEB | 4, ., 2, ., 1, ., 2 | 0.6712 | 0.3924 | 0.4689 | yes | N/A |
| Q8FX90 | FUMC_BRUSU | 4, ., 2, ., 1, ., 2 | 0.6405 | 0.3888 | 0.4686 | yes | N/A |
| Q8F9L0 | FUMC_LEPIN | 4, ., 2, ., 1, ., 2 | 0.6926 | 0.3906 | 0.4698 | yes | N/A |
| P28894 | FUMC1_BRAJA | 4, ., 2, ., 1, ., 2 | 0.6527 | 0.3870 | 0.4566 | yes | N/A |
| O17214 | FUMH_CAEEL | 4, ., 2, ., 1, ., 2 | 0.8127 | 0.3924 | 0.4371 | yes | N/A |
| Q9FI53 | FUM2_ARATH | 4, ., 2, ., 1, ., 2 | 0.7647 | 0.3960 | 0.4428 | yes | N/A |
| Q7W4N9 | FUMC_BORPA | 4, ., 2, ., 1, ., 2 | 0.6651 | 0.3853 | 0.4643 | yes | N/A |
| P08417 | FUMH_YEAST | 4, ., 2, ., 1, ., 2 | 0.6891 | 0.3978 | 0.4549 | yes | N/A |
| Q72VY3 | FUMC_LEPIC | 4, ., 2, ., 1, ., 2 | 0.6926 | 0.3906 | 0.4698 | yes | N/A |
| Q8ZEB6 | FUMC_YERPE | 4, ., 2, ., 1, ., 2 | 0.6635 | 0.3888 | 0.4666 | yes | N/A |
| Q4UMT4 | FUMC_RICFE | 4, ., 2, ., 1, ., 2 | 0.7181 | 0.3942 | 0.4772 | yes | N/A |
| Q92GW0 | FUMC_RICCN | 4, ., 2, ., 1, ., 2 | 0.7077 | 0.3924 | 0.4730 | yes | N/A |
| O25883 | FUMC_HELPY | 4, ., 2, ., 1, ., 2 | 0.6306 | 0.3978 | 0.4794 | yes | N/A |
| P93033 | FUM1_ARATH | 4, ., 2, ., 1, ., 2 | 0.7511 | 0.3960 | 0.4491 | yes | N/A |
| Q9ZJQ9 | FUMC_HELPJ | 4, ., 2, ., 1, ., 2 | 0.6261 | 0.3978 | 0.4794 | yes | N/A |
| Q8ZPL7 | FUMC_SALTY | 4, ., 2, ., 1, ., 2 | 0.6405 | 0.3888 | 0.4646 | yes | N/A |
| P97807 | FUMH_MOUSE | 4, ., 2, ., 1, ., 2 | 0.7914 | 0.3781 | 0.4161 | yes | N/A |
| Q8XQE8 | FUMC_RALSO | 4, ., 2, ., 1, ., 2 | 0.6635 | 0.3888 | 0.4707 | yes | N/A |
| Q1RHL6 | FUMC_RICBR | 4, ., 2, ., 1, ., 2 | 0.7214 | 0.3924 | 0.4730 | yes | N/A |
| Q8KTE1 | FUMC_METEA | 4, ., 2, ., 1, ., 2 | 0.7018 | 0.3906 | 0.4618 | yes | N/A |
| Q83ML8 | FUMC_SHIFL | 4, ., 2, ., 1, ., 2 | 0.6635 | 0.3888 | 0.4646 | yes | N/A |
| Q68W74 | FUMC_RICTY | 4, ., 2, ., 1, ., 2 | 0.7031 | 0.3924 | 0.4750 | yes | N/A |
| Q7W0A2 | FUMC_BORPE | 4, ., 2, ., 1, ., 2 | 0.6651 | 0.3853 | 0.4643 | yes | N/A |
| Q8FHA7 | FUMC_ECOL6 | 4, ., 2, ., 1, ., 2 | 0.6635 | 0.3888 | 0.4646 | yes | N/A |
| Q8YB50 | FUMC_BRUME | 4, ., 2, ., 1, ., 2 | 0.6405 | 0.3888 | 0.4686 | yes | N/A |
| P10173 | FUMH_PIG | 4, ., 2, ., 1, ., 2 | 0.7914 | 0.3781 | 0.4527 | yes | N/A |
| Q7VKC9 | FUMC_HAEDU | 4, ., 2, ., 1, ., 2 | 0.6210 | 0.3924 | 0.4719 | yes | N/A |
| Q7SX99 | FUMH_DANRE | 4, ., 2, ., 1, ., 2 | 0.7853 | 0.3924 | 0.4302 | yes | N/A |
| O94552 | FUMH_SCHPO | 4, ., 2, ., 1, ., 2 | 0.6696 | 0.4014 | 0.4307 | yes | N/A |
| Q7N4H8 | FUMC_PHOLL | 4, ., 2, ., 1, ., 2 | 0.6728 | 0.3888 | 0.4676 | yes | N/A |
| Q4L7F5 | FUMC_STAHJ | 4, ., 2, ., 1, ., 2 | 0.6330 | 0.3906 | 0.4728 | yes | N/A |
| P07954 | FUMH_HUMAN | 4, ., 2, ., 1, ., 2 | 0.7867 | 0.3781 | 0.4137 | yes | N/A |
| P07343 | FUMC_BACSU | 4, ., 2, ., 1, ., 2 | 0.6284 | 0.3906 | 0.4718 | yes | N/A |
| Q9A6I5 | FUMC_CAUCR | 4, ., 2, ., 1, ., 2 | 0.6519 | 0.3996 | 0.4816 | yes | N/A |
| Q7WG65 | FUMC_BORBR | 4, ., 2, ., 1, ., 2 | 0.6651 | 0.3853 | 0.4643 | yes | N/A |
| Q54VA2 | FUMH_DICDI | 4, ., 2, ., 1, ., 2 | 0.7590 | 0.3942 | 0.4536 | yes | N/A |
| P14408 | FUMH_RAT | 4, ., 2, ., 1, ., 2 | 0.7867 | 0.3781 | 0.4161 | yes | N/A |
| Q9CMK1 | FUMC_PASMU | 4, ., 2, ., 1, ., 2 | 0.6301 | 0.3924 | 0.4719 | yes | N/A |
| P95331 | FUMC_MYXXD | 4, ., 2, ., 1, ., 2 | 0.6438 | 0.3924 | 0.4699 | yes | N/A |
| Q82SM5 | FUMC_NITEU | 4, ., 2, ., 1, ., 2 | 0.6465 | 0.3853 | 0.4653 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 4.2.1 | 0.766 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 558 | |||
| PRK00485 | 464 | PRK00485, fumC, fumarate hydratase; Reviewed | 1e-164 | |
| cd01362 | 455 | cd01362, Fumarase_classII, Class II fumarases | 1e-159 | |
| COG0114 | 462 | COG0114, FumC, Fumarase [Energy production and con | 1e-148 | |
| PLN00134 | 458 | PLN00134, PLN00134, fumarate hydratase; Provisiona | 1e-144 | |
| cd01596 | 450 | cd01596, Aspartase_like, aspartase (L-aspartate am | 1e-144 | |
| TIGR00979 | 458 | TIGR00979, fumC_II, fumarate hydratase, class II | 1e-138 | |
| PRK12425 | 464 | PRK12425, PRK12425, fumarate hydratase; Provisiona | 1e-103 | |
| PRK12273 | 472 | PRK12273, aspA, aspartate ammonia-lyase; Provision | 7e-88 | |
| cd01357 | 450 | cd01357, Aspartase, Aspartase | 1e-85 | |
| COG1027 | 471 | COG1027, AspA, Aspartate ammonia-lyase [Amino acid | 5e-80 | |
| PRK13353 | 473 | PRK13353, PRK13353, aspartate ammonia-lyase; Provi | 4e-78 | |
| TIGR00839 | 468 | TIGR00839, aspA, aspartate ammonia-lyase | 1e-64 | |
| PRK14515 | 479 | PRK14515, PRK14515, aspartate ammonia-lyase; Provi | 8e-56 | |
| cd01334 | 325 | cd01334, Lyase_I, Lyase class I family; a group of | 7e-53 | |
| pfam00206 | 312 | pfam00206, Lyase_1, Lyase | 1e-41 | |
| cd01594 | 231 | cd01594, Lyase_I_like, Lyase class I_like superfam | 5e-37 | |
| pfam10415 | 55 | pfam10415, FumaraseC_C, Fumarase C C-terminus | 1e-29 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 3e-18 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 6e-15 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 6e-15 | |
| pfam13895 | 80 | pfam13895, Ig_2, Immunoglobulin domain | 1e-13 | |
| cd01597 | 437 | cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muco | 1e-13 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 1e-13 | |
| pfam08686 | 34 | pfam08686, PLAC, PLAC (protease and lacunin) domai | 3e-13 | |
| cd01595 | 381 | cd01595, Adenylsuccinate_lyase_like, Adenylsuccina | 1e-12 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 2e-12 | |
| COG0015 | 438 | COG0015, PurB, Adenylosuccinate lyase [Nucleotide | 6e-12 | |
| cd05724 | 86 | cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like | 9e-11 | |
| TIGR00928 | 435 | TIGR00928, purB, adenylosuccinate lyase | 7e-10 | |
| cd05748 | 74 | cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d | 9e-10 | |
| cd05730 | 95 | cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig | 1e-08 | |
| PRK08937 | 216 | PRK08937, PRK08937, adenylosuccinate lyase; Provis | 2e-08 | |
| PRK08540 | 449 | PRK08540, PRK08540, adenylosuccinate lyase; Review | 6e-08 | |
| cd05746 | 69 | cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I | 9e-08 | |
| pfam00047 | 62 | pfam00047, ig, Immunoglobulin domain | 1e-07 | |
| cd05731 | 71 | cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig | 1e-07 | |
| cd05757 | 92 | cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig) | 2e-07 | |
| cd05760 | 77 | cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like | 5e-07 | |
| cd05728 | 85 | cd05728, Ig4_Contactin-2-like, Fourth Ig domain of | 6e-07 | |
| cd05750 | 75 | cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li | 7e-07 | |
| pfam13927 | 74 | pfam13927, Ig_3, Immunoglobulin domain | 8e-07 | |
| cd05736 | 76 | cd05736, Ig2_Follistatin_like, Second immunoglobul | 1e-06 | |
| cd05725 | 69 | cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like | 1e-06 | |
| cd03302 | 436 | cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate | 1e-06 | |
| cd05737 | 92 | cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob | 1e-06 | |
| cd05747 | 92 | cd05747, Ig5_Titin_like, M5, fifth immunoglobulin | 4e-06 | |
| cd05732 | 96 | cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig | 7e-06 | |
| cd05723 | 71 | cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)- | 9e-06 | |
| COG0165 | 459 | COG0165, ArgH, Argininosuccinate lyase [Amino acid | 1e-05 | |
| cd04971 | 81 | cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobuli | 1e-05 | |
| cd05864 | 70 | cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-l | 2e-05 | |
| cd05848 | 94 | cd05848, Ig1_Contactin-5, First Ig domain of conta | 2e-05 | |
| TIGR02426 | 338 | TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-mucona | 2e-05 | |
| cd05745 | 74 | cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig | 3e-05 | |
| cd04969 | 73 | cd04969, Ig5_Contactin_like, Fifth Ig domain of co | 4e-05 | |
| cd05729 | 85 | cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig) | 4e-05 | |
| cd05738 | 74 | cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu | 7e-05 | |
| PRK06390 | 451 | PRK06390, PRK06390, adenylosuccinate lyase; Provis | 8e-05 | |
| TIGR00838 | 455 | TIGR00838, argH, argininosuccinate lyase | 1e-04 | |
| cd04976 | 71 | cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik | 1e-04 | |
| cd05891 | 92 | cd05891, Ig_M-protein_C, C-terminal immunoglobulin | 2e-04 | |
| cd05876 | 71 | cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik | 2e-04 | |
| cd05897 | 95 | cd05897, Ig2_IL1R2_like, Second immunoglobulin (Ig | 2e-04 | |
| cd04979 | 89 | cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like | 2e-04 | |
| PRK09053 | 452 | PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cyc | 3e-04 | |
| cd05869 | 97 | cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik | 3e-04 | |
| cd04967 | 91 | cd04967, Ig1_Contactin, First Ig domain of contact | 3e-04 | |
| cd05744 | 75 | cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l | 4e-04 | |
| cd01359 | 435 | cd01359, Argininosuccinate_lyase, Argininosuccinat | 5e-04 | |
| cd05752 | 78 | cd05752, Ig1_FcgammaR_like, Frst immunoglobulin (I | 5e-04 | |
| cd05753 | 83 | cd05753, Ig2_FcgammaR_like, Second immunoglobulin | 5e-04 | |
| cd07693 | 100 | cd07693, Ig1_Robo, First immunoglobulin (Ig)-like | 6e-04 | |
| cd05763 | 75 | cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) | 7e-04 | |
| cd01360 | 387 | cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate | 8e-04 | |
| PLN02646 | 474 | PLN02646, PLN02646, argininosuccinate lyase | 0.001 | |
| cd05856 | 82 | cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I | 0.001 | |
| cd05895 | 76 | cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)- | 0.001 | |
| cd05765 | 81 | cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) | 0.002 | |
| cd05855 | 79 | cd05855, Ig_TrkB_d5, Fifth domain (immunoglobulin- | 0.003 | |
| cd04975 | 101 | cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig) | 0.003 | |
| cd04978 | 76 | cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin | 0.004 |
| >gnl|CDD|234779 PRK00485, fumC, fumarate hydratase; Reviewed | Back alignment and domain information |
|---|
Score = 474 bits (1224), Expect = e-164
Identities = 169/219 (77%), Positives = 185/219 (84%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
+ A ++AELTGLPF +APNKFEALAAHDALVE SGAL T+AVSLMKIANDIR+LASGPRC
Sbjct: 245 RVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLASGPRC 304
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGE+SLPENEPGSSIMPGKVNPTQCEALTMV AQVMGN AVT GS G+FELNVFKP+
Sbjct: 305 GLGEISLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNDAAVTFAGSQGNFELNVFKPV 364
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
I N L+SIRL+AD+ +F D CV GI N E I LL SLMLVTALNPHIGYDKAAKI
Sbjct: 365 IAYNFLQSIRLLADAMRSFADHCVVGIEPNRERIKELLERSLMLVTALNPHIGYDKAAKI 424
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AK AHKEG TLK AAL+LGYLTEEEF++WV PE M GP
Sbjct: 425 AKKAHKEGLTLKEAALELGYLTEEEFDRWVDPEKMTGPG 463
|
Length = 464 |
| >gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases | Back alignment and domain information |
|---|
Score = 462 bits (1191), Expect = e-159
Identities = 170/215 (79%), Positives = 189/215 (87%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K AA++AELTGLPF +APNKFEALAAHDALVE SGAL T+AVSLMKIANDIR+L SGPRC
Sbjct: 241 KVAAELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLGSGPRC 300
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGN A+TI GS+G+FELNVFKP+
Sbjct: 301 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNDAAITIAGSSGNFELNVFKPV 360
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
I+ N+L+SIRL+AD+ +F DKCV+GI N E I LL SLMLVTALNPHIGYDKAAKI
Sbjct: 361 IIYNLLQSIRLLADACRSFADKCVAGIEPNRERIAELLERSLMLVTALNPHIGYDKAAKI 420
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDM 554
AK AHKEG TLK AAL+LGYLTEEEF++ V PE M
Sbjct: 421 AKKAHKEGLTLKEAALELGYLTEEEFDRLVDPEKM 455
|
This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle. Length = 455 |
| >gnl|CDD|223192 COG0114, FumC, Fumarase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 433 bits (1115), Expect = e-148
Identities = 163/219 (74%), Positives = 184/219 (84%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K A ++AELTGLPF +APNKFEALAAHDALVE SGAL T+AVSLMKIANDIR+L SGPRC
Sbjct: 244 KVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALRTLAVSLMKIANDIRWLGSGPRC 303
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGE+ LPENEPGSSIMPGKVNPTQCEALTMVAAQV+GN A+ GS G+FELNVFKP+
Sbjct: 304 GLGEIELPENEPGSSIMPGKVNPTQCEALTMVAAQVIGNDAAIAFAGSQGNFELNVFKPV 363
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
I N L+S+RL+AD+ +F D C+ GI NEE I LL SLMLVTALNPHIGYDKAAKI
Sbjct: 364 IAYNFLQSVRLLADAMRSFADHCIVGIEPNEERIKELLERSLMLVTALNPHIGYDKAAKI 423
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AK AHKEGTTL+ AAL+LG L+EEEF+K V PE M+GP
Sbjct: 424 AKKAHKEGTTLREAALELGLLSEEEFDKLVDPEKMVGPG 462
|
Length = 462 |
| >gnl|CDD|215069 PLN00134, PLN00134, fumarate hydratase; Provisional | Back alignment and domain information |
|---|
Score = 424 bits (1091), Expect = e-144
Identities = 172/218 (78%), Positives = 187/218 (85%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K AA +AE TGLPF +APNKFEALAAHDA VE+SGALNTVAVSLMKIANDIR L SGPRC
Sbjct: 237 KIAAAVAEETGLPFVTAPNKFEALAAHDAFVELSGALNTVAVSLMKIANDIRLLGSGPRC 296
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGEL+LPENEPGSSIMPGKVNPTQCEALTMV AQVMGNHVA+T+GGS GHFELNVFKPL
Sbjct: 297 GLGELNLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGSAGHFELNVFKPL 356
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
I N+L SIRL+ D++ +F CV GI AN E I +LLHESLMLVTALNP IGYDKAA +
Sbjct: 357 IAYNLLHSIRLLGDASASFRKNCVRGIEANRERISKLLHESLMLVTALNPKIGYDKAAAV 416
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGP 557
AK AHKEGTTLK AALKLG LT EEF++ VVPE M GP
Sbjct: 417 AKKAHKEGTTLKEAALKLGVLTAEEFDELVVPEKMTGP 454
|
Length = 458 |
| >gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes | Back alignment and domain information |
|---|
Score = 422 bits (1088), Expect = e-144
Identities = 142/211 (67%), Positives = 170/211 (80%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K AA++AELTGLPF +APN FEA AAHDALVEVSGAL T+AVSL KIAND+R L+SGPR
Sbjct: 240 KVAAELAELTGLPFVTAPNLFEATAAHDALVEVSGALKTLAVSLSKIANDLRLLSSGPRA 299
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGE++LP N+PGSSIMPGKVNP EA+ MVAAQV+GN A+T+ GS G ELNVFKP+
Sbjct: 300 GLGEINLPANQPGSSIMPGKVNPVIPEAVNMVAAQVIGNDTAITMAGSAGQLELNVFKPV 359
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
I N+L+SIRL+A++ +F DKCV GI ANEE + SLMLVTALNPHIGY+KAA+I
Sbjct: 360 IAYNLLQSIRLLANACRSFRDKCVEGIEANEERCKEYVENSLMLVTALNPHIGYEKAAEI 419
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVV 550
AK A KEG TL+ AAL+LG LTEEE ++ +
Sbjct: 420 AKEALKEGRTLREAALELGLLTEEELDEILD 450
|
This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle. Length = 450 |
| >gnl|CDD|130052 TIGR00979, fumC_II, fumarate hydratase, class II | Back alignment and domain information |
|---|
Score = 408 bits (1051), Expect = e-138
Identities = 155/217 (71%), Positives = 180/217 (82%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K A +IA+ TGLPF +APNKFEALAAHDA+VE GAL T+A SLMKIANDIR+L SGPRC
Sbjct: 242 KVAEEIAKETGLPFVTAPNKFEALAAHDAIVEAHGALKTLAASLMKIANDIRWLGSGPRC 301
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGEL +PENEPGSSIMPGKVNPTQCEALTMV QVMGN + GS G+FELNVFKP+
Sbjct: 302 GLGELFIPENEPGSSIMPGKVNPTQCEALTMVCVQVMGNDATIGFAGSQGNFELNVFKPV 361
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
I+ N L+S+RL++D+ +F D CV GI N+E I +LL+ SLMLVTALNPHIGYD AAKI
Sbjct: 362 IIYNFLQSVRLLSDAMESFRDHCVVGIEPNKERIQQLLNNSLMLVTALNPHIGYDNAAKI 421
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLG 556
AK AHKEG TLK AAL+LG L+EEEF++WVVPE M+G
Sbjct: 422 AKKAHKEGITLKEAALELGLLSEEEFDEWVVPEQMVG 458
|
Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs [Energy metabolism, TCA cycle]. Length = 458 |
| >gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional | Back alignment and domain information |
|---|
Score = 319 bits (819), Expect = e-103
Identities = 137/216 (63%), Positives = 167/216 (77%)
Query: 342 AAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGL 401
AA++A L+GLPF +APNKF ALA H+ LV +SGAL T+AV+LMKIAND+R L SGPR GL
Sbjct: 245 AAELAALSGLPFVTAPNKFAALAGHEPLVSLSGALKTLAVALMKIANDLRLLGSGPRAGL 304
Query: 402 GELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIV 461
E+ LP NEPGSSIMPGKVNPTQCEAL+M+A QVMGN + S GH +LNVFKP+I+
Sbjct: 305 AEVRLPANEPGSSIMPGKVNPTQCEALSMLACQVMGNDATIGFAASQGHLQLNVFKPVII 364
Query: 462 SNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAK 521
N+L+SIRL+AD F CV+G+ + E + L LMLVTALNPHIGYDKAA+IAK
Sbjct: 365 HNLLQSIRLLADGCRNFQQHCVAGLEPDAEQMAAHLERGLMLVTALNPHIGYDKAAEIAK 424
Query: 522 TAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGP 557
A+ EGTTL+ AAL LGYLT+E+F+ WV PE+ML
Sbjct: 425 KAYAEGTTLREAALALGYLTDEQFDAWVRPENMLEA 460
|
Length = 464 |
| >gnl|CDD|237031 PRK12273, aspA, aspartate ammonia-lyase; Provisional | Back alignment and domain information |
|---|
Score = 278 bits (715), Expect = 7e-88
Identities = 101/219 (46%), Positives = 136/219 (62%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K+AE+TGLP A + EA A VEVSGAL +AV L KI ND+R L+SGPR
Sbjct: 247 LVVEKLAEITGLPLVPAEDLIEATQDTGAFVEVSGALKRLAVKLSKICNDLRLLSSGPRA 306
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GL E++LP + GSSIMPGKVNP E + V QV+GN VT+ G ELNV +P+
Sbjct: 307 GLNEINLPAVQAGSSIMPGKVNPVIPEVVNQVCFQVIGNDTTVTMAAEAGQLELNVMEPV 366
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
I N+ SI ++ ++ +KC+ GI ANEE + S+ +VTALNP+IGY+ AA+I
Sbjct: 367 IAYNLFESISILTNACRTLREKCIDGITANEERCREYVENSIGIVTALNPYIGYENAAEI 426
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AK A + G +++ L+ G LTEEE + + PE+M P
Sbjct: 427 AKEALETGKSVRELVLERGLLTEEELDDILSPENMTHPG 465
|
Length = 472 |
| >gnl|CDD|176462 cd01357, Aspartase, Aspartase | Back alignment and domain information |
|---|
Score = 272 bits (698), Expect = 1e-85
Identities = 102/208 (49%), Positives = 140/208 (67%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K++E+TGLP K A N +A DA VEVSGAL +AV L KIAND+R L+SGPR
Sbjct: 240 LVVEKLSEITGLPLKRAENLIDATQNTDAFVEVSGALKRLAVKLSKIANDLRLLSSGPRA 299
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGE++LP +PGSSIMPGKVNP E + VA QV+GN + +T+ G ELNVF+P+
Sbjct: 300 GLGEINLPAVQPGSSIMPGKVNPVIPEVVNQVAFQVIGNDLTITMAAEAGQLELNVFEPV 359
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
I N+L SI ++ ++ ++C+ GI ANEE + S+ +VTALNP+IGY+ AA+I
Sbjct: 360 IAYNLLESIDILTNAVRTLRERCIDGITANEERCREYVENSIGIVTALNPYIGYEAAAEI 419
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNK 547
AK A + G +++ L+ G LTEEE ++
Sbjct: 420 AKEALETGRSVRELVLEEGLLTEEELDE 447
|
This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Length = 450 |
| >gnl|CDD|223958 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 258 bits (662), Expect = 5e-80
Identities = 97/215 (45%), Positives = 133/215 (61%)
Query: 343 AKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLG 402
K+AE+TGLP A N EA A V VSGAL +AV L KI ND+R L+SGPR GL
Sbjct: 249 KKLAEVTGLPLVPAENLIEATQDTGAFVMVSGALKRLAVKLSKICNDLRLLSSGPRAGLN 308
Query: 403 ELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVS 462
E++LP + GSSIMPGKVNP E + V +V+GN +T+ G +LNV +P+I
Sbjct: 309 EINLPAVQAGSSIMPGKVNPVIPEVVNQVCFKVIGNDTTITMAAEAGQLQLNVMEPVIAY 368
Query: 463 NVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKT 522
+ SI ++ ++ +KC+ GI ANEE + S+ +VTALNP+IGY+ AA IAK
Sbjct: 369 ALFESISILTNACRNLREKCIDGITANEERCEEYVENSIGIVTALNPYIGYENAAIIAKE 428
Query: 523 AHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGP 557
A + G +++ L+ G LTEEE + + PE+M P
Sbjct: 429 ALETGKSVREVVLERGLLTEEELDDILSPENMTKP 463
|
Length = 471 |
| >gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional | Back alignment and domain information |
|---|
Score = 253 bits (649), Expect = 4e-78
Identities = 106/219 (48%), Positives = 142/219 (64%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
+ +A +TGLP A + +A DA VEVSGAL AV+L KIAND+R L+SGPR
Sbjct: 245 RVVKHLAAITGLPLVGAEDLVDATQNTDAFVEVSGALKVCAVNLSKIANDLRLLSSGPRT 304
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGE++LP +PGSSIMPGKVNP E + +A QV+GN V +T+ G ELNV +P+
Sbjct: 305 GLGEINLPAVQPGSSIMPGKVNPVMPEVVNQIAFQVIGNDVTITLAAEAGQLELNVMEPV 364
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
I N+L SI ++ ++ AFTD CV GI ANEE + +S+ + TALNPHIGY+ AA+I
Sbjct: 365 IAFNLLESISILTNACRAFTDNCVKGIEANEERCKEYVEKSVGIATALNPHIGYEAAARI 424
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AK A G +++ AL+ G L+EEE + + P M P
Sbjct: 425 AKEAIATGRSVRELALENGLLSEEELDLILDPFRMTHPG 463
|
Length = 473 |
| >gnl|CDD|213564 TIGR00839, aspA, aspartate ammonia-lyase | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 1e-64
Identities = 89/214 (41%), Positives = 127/214 (59%)
Query: 344 KIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGE 403
K+AE+TGLP A N EA + A V V GAL +AV + KI ND+R L+SGPR GL E
Sbjct: 247 KLAEVTGLPCVPAENLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNE 306
Query: 404 LSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSN 463
++LPE + GSSIMP KVNP E + V +V+GN VT+ G +LNV +P+I
Sbjct: 307 INLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTLAAEAGQLQLNVMEPVIGQA 366
Query: 464 VLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTA 523
+ SI ++ ++ TDKCV+GI AN+E + S+ +VT LNP IG+ + K
Sbjct: 367 MFESIHILTNACYNLTDKCVNGITANKEICEGYVFNSIGIVTYLNPFIGHHNGDIVGKIC 426
Query: 524 HKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGP 557
+ G +++ L+ G LTEEE + E+++ P
Sbjct: 427 AETGKSVREVVLEKGLLTEEELDDIFSVENLMHP 460
|
This enzyme, aspartate ammonia-lyase, shows local homology to a number of other lyases, as modeled by Pfam model pfam00206. Fumarate hydratase scores as high as 570 bits against this model [Energy metabolism, Amino acids and amines]. Length = 468 |
| >gnl|CDD|237743 PRK14515, PRK14515, aspartate ammonia-lyase; Provisional | Back alignment and domain information |
|---|
Score = 194 bits (495), Expect = 8e-56
Identities = 89/215 (41%), Positives = 135/215 (62%)
Query: 343 AKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLG 402
+A ++ LP A + +A DA EVS AL +++ KIAND+R +ASGPR GL
Sbjct: 254 KHLAAISELPLVGAEDLVDATQNTDAYTEVSAALKVCMMNMSKIANDLRLMASGPRVGLA 313
Query: 403 ELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVS 462
E+ LP +PGSSIMPGKVNP E + +A QV+GN + + G ELNV +P++V
Sbjct: 314 EIMLPARQPGSSIMPGKVNPVMPEVINQIAFQVIGNDHTICLASEAGQLELNVMEPVLVF 373
Query: 463 NVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKT 522
N+L+SI ++ + AFTD C+ GI ANE+ + + +S+ ++TA+NPHIGY+ AA++AK
Sbjct: 374 NLLQSISIMNNGFRAFTDNCLKGIEANEDRLKEYVEKSVGIITAVNPHIGYEAAARVAKE 433
Query: 523 AHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGP 557
A G +++ +K G L++E+ + P +M P
Sbjct: 434 AIATGQSVRELCVKNGVLSQEDLELILDPFEMTHP 468
|
Length = 479 |
| >gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 7e-53
Identities = 59/149 (39%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 342 AAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGL 401
++AEL G F APN +A++ D LVE+ AL +AVSL KIAND+R L+SG
Sbjct: 182 RERVAELLGF-FGPAPNSTQAVSDRDFLVELLSALALLAVSLSKIANDLRLLSSG---EF 237
Query: 402 GELSLPEN-EPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLI 460
GE+ LP+ +PGSSIMP KVNP E + +A +V+GN A+ G E NV P+
Sbjct: 238 GEVELPDAKQPGSSIMPQKVNPVILELVRGLAGRVIGNLAALLEALKGGPLEDNVDSPVE 297
Query: 461 VSNVLRSIRLIADSATAFTDKCVSGIVAN 489
+ S L+ + T G+ N
Sbjct: 298 REALPDSFDLLDAALRLLTGVL-EGLEVN 325
|
The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Length = 325 |
| >gnl|CDD|215787 pfam00206, Lyase_1, Lyase | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 1e-41
Identities = 56/96 (58%), Positives = 64/96 (66%), Gaps = 2/96 (2%)
Query: 342 AAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGL 401
A ++ TGLP APN FEA + DA+VE SGAL +A L K AND+R L+SGP G
Sbjct: 219 AKELGFFTGLPVP-APNSFEATSDRDAVVEFSGALALLATHLSKFANDLRLLSSGP-FGF 276
Query: 402 GELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMG 437
ELSLPE EPGSSIMPGKVNP Q E L A +V G
Sbjct: 277 VELSLPEGEPGSSIMPGKVNPDQLELLRGKAGRVFG 312
|
Length = 312 |
| >gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 5e-37
Identities = 44/112 (39%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 368 ALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEA 427
A+ E AL A L KIA D+R L SG LGE LP +PGSSIMP KVNP E
Sbjct: 121 AVAEALDALALAAAHLSKIAEDLRLLLSGEFGELGEPFLP-GQPGSSIMPQKVNPVAAEL 179
Query: 428 LTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIRLIADSATAFT 479
+ +A V+GN VAV G N P + + S+ L+ D+
Sbjct: 180 VRGLAGLVIGNLVAVLTALKGGPERDNEDSPSMREILADSLLLLIDALRLLL 231
|
Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respectively. Length = 231 |
| >gnl|CDD|204481 pfam10415, FumaraseC_C, Fumarase C C-terminus | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-29
Identities = 38/55 (69%), Positives = 44/55 (80%)
Query: 503 LVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGP 557
LVTALNPHIGYDKAAKIAK A K G TL+ AL+LG LTEEE ++ + PE+M GP
Sbjct: 1 LVTALNPHIGYDKAAKIAKEALKTGRTLREVALELGLLTEEELDEILDPENMTGP 55
|
Fumarase C catalyzes the stereo-specific interconversion of fumarate to L-malate as part of the Kreb's cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit. FumaraseC_C does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. Length = 55 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 3e-18
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQA 190
+ G C V G P P V W+KDGQ + + +++T L I+
Sbjct: 5 QKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSD-RFKVTYEGGTYTLTISNV 63
Query: 191 NATDSGEYRCVASNSYTSDENAVTIRV 217
D G+Y CVA+NS E + + V
Sbjct: 64 QPDDEGKYTCVATNSAGEAEASAELTV 90
|
Length = 90 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 6e-15
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR---LHINQANAT 193
+ G +++ C+ G P P+V WYK G + + + ++ S L I+
Sbjct: 2 PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61
Query: 194 DSGEYRCVASNSYTSDENAVTIRV 217
DSG Y C A+NS S + T+ V
Sbjct: 62 DSGTYTCAATNSSGSASSGTTLTV 85
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 6e-15
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR---LHINQANAT 193
+ G +++ C+ G P P+V WYK G + + + ++ S L I+
Sbjct: 2 PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61
Query: 194 DSGEYRCVASNSYTSDENAVTIRV 217
DSG Y C A+NS S + T+ V
Sbjct: 62 DSGTYTCAATNSSGSASSGTTLTV 85
|
Length = 85 |
| >gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-13
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANAT 193
+T V G D+++ C G P P WYKDG + + N +A
Sbjct: 4 LTPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSS--------QNGFFTPNVSAE 55
Query: 194 DSGEYRCVASNSYTS-DENAVTIRV 217
DSG Y CVASN N VT+ V
Sbjct: 56 DSGTYTCVASNGGGGKTSNPVTLTV 80
|
This domain contains immunoglobulin-like domains. Length = 80 |
| >gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 1e-13
Identities = 58/220 (26%), Positives = 94/220 (42%), Gaps = 42/220 (19%)
Query: 364 AAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVN 421
A D + E++ L + +L KIA D+ L + +GE++ P + GSS MP K N
Sbjct: 221 TARDRIAELASFLALLTGTLGKIARDVYLLM---QTEIGEVAEPFAKGRGGSSTMPHKRN 277
Query: 422 PTQCEALTMVAAQVMGNHVAVTI---------GGSNGHFELNVFKPLIVSNVLRSIRLIA 472
P CE + +A +V G A+ + H E L I L+A
Sbjct: 278 PVGCELIVALARRVPG-LAALLLDAMVQEHERDAGAWHAEW---------IALPEIFLLA 327
Query: 473 DSATAFTDKCVSGIVANEENIHRLLH--------ESLMLVTALNPHIGYDKA----AKIA 520
A + +SG+ NE+ + L E++M+ AL P +G +A +
Sbjct: 328 SGALEQAEFLLSGLEVNEDRMRANLDLTGGLILSEAVMM--ALAPKLGRQEAHDLVYEAC 385
Query: 521 KTAHKEGTTLKVAALK----LGYLTEEEFNKWVVPEDMLG 556
A +EG L+ L+ YL++EE + + P + LG
Sbjct: 386 MRAVEEGRPLREVLLEDPEVAAYLSDEELDALLDPANYLG 425
|
This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms. Length = 437 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 1e-13
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN-RLHINQANATDSGEYRCVA 202
G +++ C +G P+P + W KDG+ + R S L I + DSG Y CVA
Sbjct: 2 GQSVTLTCPAEGNPVPNITWLKDGKPLPE---SNRFVASGSTLTIKSVSLEDSGLYTCVA 58
Query: 203 SNS 205
NS
Sbjct: 59 ENS 61
|
Length = 63 |
| >gnl|CDD|204025 pfam08686, PLAC, PLAC (protease and lacunin) domain | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 3e-13
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 225 SCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTR 259
C+D P NC+L+V+ R C H YY Q CC SC R
Sbjct: 1 ECKDSP-RTNCELVVQARLCSHKYYRQRCCRSCRR 34
|
The PLAC (protease and lacunin) domain is a short six-cysteine region that is usually found at the C terminal of proteins. It is found in a range of proteins including PACE4 (paired basic amino acid cleaving enzyme 4) and the extracellular matrix protein lacunin. Length = 34 |
| >gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase (ASL)_like | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 1e-12
Identities = 50/176 (28%), Positives = 76/176 (43%), Gaps = 27/176 (15%)
Query: 365 AHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNP 422
D + E+ AL +A +L KIA DIR L R +GE+ P + + GSS MP K NP
Sbjct: 213 PRDRIAELLSALALIAGTLEKIATDIRLLQ---RTEIGEVEEPFEKGQVGSSTMPHKRNP 269
Query: 423 TQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVF---KPLIVSNVLRSI----RLIADSA 475
E + +A V E V + L S+V R+I L+ D+A
Sbjct: 270 IDSENIEGLARLVRALAAPA--------LENLVQWHERDLSDSSVERNILPDAFLLLDAA 321
Query: 476 TAFTDKCVSGIVANEENIHRLLHESLMLV------TALNPH-IGYDKAAKIAKTAH 524
+ + G+V N E + R L + L+ AL +G +A ++ K +
Sbjct: 322 LSRLQGLLEGLVVNPERMRRNLDLTWGLILSEAVMMALAKKGLGRQEAYELVKEEN 377
|
This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting. Length = 381 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 62.5 bits (151), Expect = 2e-12
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN------RLHINQANATDSGEYRC 200
+++ C G P P + W K+G+ + + + + L I+ DSG Y C
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60
Query: 201 VASNSYTSDENAVT 214
VASNS + +VT
Sbjct: 61 VASNSAGTVSASVT 74
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 6e-12
Identities = 56/232 (24%), Positives = 88/232 (37%), Gaps = 48/232 (20%)
Query: 342 AAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGL 401
++AE GL + D + E AL +A SL K A DIR L R +
Sbjct: 202 EERVAEKLGLKPAPISTQVSP---RDRIAEFFSALALLAGSLEKFARDIRLLQ---RTEV 255
Query: 402 GELSLP--ENEPGSSIMPGKVNPTQCEALT----MVAAQVMGNHVAVTI----GGSNGHF 451
GE+ P + + GSS MP K NP E +T + A V + + ++
Sbjct: 256 GEVEEPFAKGQVGSSAMPHKRNPIDSENVTGLARVARALVSTLLENLVLWHERDLTD--- 312
Query: 452 ELNVFKPLIVSNVLRSI----RLIADSATAFTDKCVSGIVANEENIHR-------LLHES 500
S+V R I + AD A + G+ N E + R L+
Sbjct: 313 ----------SSVERVILPDAFIAADGALNRLLNVLEGLEVNPERMRRNLDLTLGLIASE 362
Query: 501 LMLVTALNPHIGYDKAAKI----AKTAHKEGTTLKVAALK----LGYLTEEE 544
+++ +G ++A ++ A A ++G L YL+EEE
Sbjct: 363 RVMLALRKKGMGREEAHELVREKAMKAWEQGKEFLELLLADERVTKYLSEEE 414
|
Length = 438 |
| >gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 9e-11
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 155 GYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNS 205
G+P P V W KDGQ + D RI + L I +A +D G Y+CVA+N
Sbjct: 23 GHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNM 73
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86 |
| >gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 7e-10
Identities = 64/217 (29%), Positives = 86/217 (39%), Gaps = 38/217 (17%)
Query: 366 HDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPT 423
D E+ AL +A +L K A DIR L R E+ P + + GSS MP K NP
Sbjct: 222 RDRHAELLDALALLATTLEKFAVDIRLLQ---RTEHFEVEEPFGKGQVGSSAMPHKRNPI 278
Query: 424 QCEALTMVAAQVMGNHVAVTIGGSNGHFELNVF----KPLIVSNVLRSIR----LIADSA 475
E V G A I NV + L S+V R I ++AD
Sbjct: 279 DFE-------NVCGL--ARVIRSVLSPALENVPLWHERDLTDSSVERIILPDSFILADIM 329
Query: 476 TAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHI-------GYDKAAKIAK-----TA 523
T K V +V N ENI R L +L L+ + I G ++A +I + A
Sbjct: 330 LKTTLKVVKKLVVNPENILRNLELTLGLIASERVLIALVERGMGREEAYEIVRELAMGAA 389
Query: 524 HKEGTTLKVAALKLG----YLTEEEFNKWVVPEDMLG 556
+ L L YL EEE + + PE +G
Sbjct: 390 EVDEPDLLEFLLADERITKYLKEEELAELLDPETYIG 426
|
This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 435 |
| >gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 9e-10
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 146 DISIPCDVDGYPIPQVFWYKDGQVIENDG-VHYRITESN-RLHINQANATDSGEYRCVAS 203
+ + + G P P V W KDG+ ++ G V T S+ L I A +DSG+Y
Sbjct: 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLK 60
Query: 204 NSYTSDENAVTIRV 217
N + ++V
Sbjct: 61 NPAGEKSATINVKV 74
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74 |
| >gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 1e-08
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE-SNRLHINQANATDSGEYRCV 201
+G +++ CD DG+P P + W KDG+ IE+ Y E + + I + D EY C+
Sbjct: 17 LGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCI 76
Query: 202 ASNSYTSDENAVTIRV 217
A N E + ++V
Sbjct: 77 AENKAGEQEAEIHLKV 92
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95 |
| >gnl|CDD|236352 PRK08937, PRK08937, adenylosuccinate lyase; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 48/202 (23%), Positives = 73/202 (36%), Gaps = 27/202 (13%)
Query: 375 ALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQ 434
L +A SL K AN+IR L E + + GSS MP K NP E +T +A
Sbjct: 22 VLALIATSLEKFANEIRLLQ-RSEIREVEEPFAKGQKGSSAMPHKRNPIGSERITGLARV 80
Query: 435 VMGNHVAVTIGGSNGHFELNVFKPLIVSNVLR----SIRLIADSATAFTDKCVSGIVANE 490
+ V H E ++ S+ R L D + +V
Sbjct: 81 LRSYLVTALENVPLWH-ERDLS----HSSAERIALPDAFLALDYILNRFVNILENLVVFP 135
Query: 491 ENIHR--------LLHESLMLVTALNPHIG----YDKAAKIAKTAHKEGTTLKVAALK-- 536
ENI R + E ++L + +G ++ + A A K L+
Sbjct: 136 ENIERNLDKTLGFIATERVLL-ELVEKGMGREEAHELIREKAMEAWKNQKDLRELLEADE 194
Query: 537 --LGYLTEEEFNKWVVPEDMLG 556
LT+EE ++ PE +G
Sbjct: 195 RFTKQLTKEELDELFDPEAFVG 216
|
Length = 216 |
| >gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 6e-08
Identities = 59/215 (27%), Positives = 90/215 (41%), Gaps = 55/215 (25%)
Query: 376 LNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQCEALTMVAA 433
L +A +L KI +IR L R +GE+ + + GSS MP K NP E + +A
Sbjct: 238 LANIATTLDKIGLEIRNLQ---RTEIGEVEEEFGKKQVGSSTMPHKRNPITSEQICGLAR 294
Query: 434 QVMGNHVAVTIGGSNGHFELNVFKPLIVSNVL---------RSIRLIADSATAFTD---- 480
V N +P +++N L R+I + TD
Sbjct: 295 VVRSN-----------------VEPALLNNPLWDERDLTNSSCERIIFPESCVLTDHILK 337
Query: 481 ---KCVSGIVANEENIHR---LLH-----ESLMLVTALNPHIGYDKAAKIAKT----AHK 525
K + G+ N ENI R L E++M+ A +G +A ++ + AH+
Sbjct: 338 LMIKVLEGLRFNPENIRRNLELTKGLIMAEAVMIELA-KRGMGRQEAHELVRQAAMKAHE 396
Query: 526 EGTTLKVAALK----LGYLTEEEFNKWVVPEDMLG 556
EG LK L+ + YLTEEE + + PE +G
Sbjct: 397 EGRHLKEVLLEDEEVMKYLTEEELEELLDPETYIG 431
|
Length = 449 |
| >gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 9e-08
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 147 ISIPCDVDGYPIPQVFWYKDG-QVIENDGVHYRITESNRLHINQANATDSGEYRCVASNS 205
+ IPC G P P + W KDG QV E+ H I+ L I D G Y CVA N+
Sbjct: 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFH--ISPEGYLAIRDVGVADQGRYECVARNT 58
Query: 206 --YTS 208
Y S
Sbjct: 59 IGYAS 63
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69 |
| >gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-07
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIEN---DGVHYRITESNRLHINQANATDSGEYRC 200
GS +++ C V G P V W+K+G+ +E G S L I+ DSG Y C
Sbjct: 1 GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60
Query: 201 VA 202
V
Sbjct: 61 VV 62
|
Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62 |
| >gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-07
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 151 CDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRCVASNSYT 207
C +G P P++ W K G + D R N L I+ + D GEYRC ASNS
Sbjct: 5 CIAEGLPTPEISWIKIGGELPAD----RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLG 60
Query: 208 SDENAVTIRVE 218
S + +++ VE
Sbjct: 61 SARHTISVTVE 71
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71 |
| >gnl|CDD|143234 cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-07
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 139 QVFGVGSDISIPC-DVDGYPI----PQVFWYKDGQVIENDGVHYRITESNRLHINQANAT 193
Q+ I C D+D + P V WYKD +++E D R + ++L I
Sbjct: 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD--RKRFVKGSKLLIQNVTEE 62
Query: 194 DSGEYRCVASNSY 206
D+G Y C + ++
Sbjct: 63 DAGNYTCKLTFTH 75
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1R1L) which maps to the same chromosomal location as IL1R1 and IL1R2. Length = 92 |
| >gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 5e-07
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR-LHINQANATDSGEYRCVASNS 205
+++ C +DG+P P W++DG + + +Y ++ R L + A DSG Y C A N+
Sbjct: 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA 60
Query: 206 YTS 208
+ S
Sbjct: 61 FGS 63
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77 |
| >gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 6e-07
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI-TESNRLHINQANATDSGEYRCV 201
+GS + C G P P W K+GQ + ++ RI E+ L I + + +DSG Y+CV
Sbjct: 13 IGSSLRWECKASGNPRPAYRWLKNGQPLASEN---RIEVEAGDLRITKLSLSDSGMYQCV 69
Query: 202 ASNSYTS 208
A N + +
Sbjct: 70 AENKHGT 76
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85 |
| >gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 7e-07
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 155 GYPIPQVFWYKDGQVI----ENDGVHYRITESN-RLHINQANATDSGEYRCVASNSYTSD 209
YP + W+KDG+ + + + R + N L IN+A DSGEY CV N +D
Sbjct: 10 EYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND 69
Query: 210 ENAVTI 215
+
Sbjct: 70 TVTANV 75
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75 |
| >gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 8e-07
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 143 VGSDISIPCDVDGYP-IPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCV 201
G +++ C +G P P + WY++G + G + + L ++ + DSG Y CV
Sbjct: 14 SGGGVTLTCSAEGGPPPPTISWYRNG--SISGGSGGLGSSGSTLTLSSVTSEDSGTYTCV 71
Query: 202 ASN 204
ASN
Sbjct: 72 ASN 74
|
This family contains immunoglobulin-like domains. Length = 74 |
| >gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 1e-06
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 148 SIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN--RLHINQANATDSGEYRCVASNS 205
S+ C +G P+P++ W K+G I +N LHI+ D+G Y C+A N
Sbjct: 2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNE 61
Query: 206 YTSDENAVTIRVE 218
DE+ ++ VE
Sbjct: 62 AGVDEDISSLFVE 74
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76 |
| >gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-06
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 151 CDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDE 210
C+V G P+P V W K+ + G I + L I A D G Y C A N E
Sbjct: 5 CEVGGDPVPTVLWRKEDGELP-KG-RAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIE 62
Query: 211 NAVTIRV 217
+ ++ V
Sbjct: 63 ASASLTV 69
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69 |
| >gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase (ASL)_subgroup 2 | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 7/134 (5%)
Query: 370 VEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQCEA 427
++V AL+++ + KIA DIR LA L E+ P + + GSS MP K NP + E
Sbjct: 233 IDVLNALSSLGATAHKIATDIRLLA-----NLKEVEEPFEKGQIGSSAMPYKRNPMRSER 287
Query: 428 LTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIRLIADSATAFTDKCVSGIV 487
+A +M S FE + + L AD+ G+V
Sbjct: 288 CCSLARHLMNLASNAAQTASTQWFERTLDDSANRRIAIPEAFLAADAILITLQNISEGLV 347
Query: 488 ANEENIHRLLHESL 501
+ I R + + L
Sbjct: 348 VYPKVIERHIRQEL 361
|
This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting. Length = 436 |
| >gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-06
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIE-NDGVHYRIT-ESNR---LHINQANATDSGEY 198
G +++ C V G P P+V W K+ Q + +D HY + E + L I ++ DSG+Y
Sbjct: 16 GKTLNLTCTVFGDPDPEVSWLKNDQALALSD--HYNVKVEQGKYASLTIKGVSSEDSGKY 73
Query: 199 RCVASNSYTSDENAVTIRV 217
V N Y + VT+ V
Sbjct: 74 GIVVKNKYGGETVDVTVSV 92
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92 |
| >gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 4e-06
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES---NRLHINQANATDSGEYRC 200
G CDVDG P P V W ++GQ+I + H +IT + + I++ +D G Y
Sbjct: 18 GESARFSCDVDGEPAPTVTWMREGQIIVSSQRH-QITSTEYKSTFEISKVQMSDEGNYTV 76
Query: 201 VASNSYTSDENAVTI 215
V NS E T+
Sbjct: 77 VVENSEGKQEAQFTL 91
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92 |
| >gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 7e-06
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 130 VKVNIT-LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN-----DG---VHYRIT 180
V+ IT LE Q I++ C+ +G PIP++ W + + DG V
Sbjct: 1 VQPKITYLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHAR 60
Query: 181 ESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
S+ L + TD+G Y C ASN D+ ++ + V
Sbjct: 61 VSS-LTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV 96
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96 |
| >gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 9e-06
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 146 DISIPCDVDGYPIPQVFWYKDGQ-VIENDGVHYRITESNRLHINQANATDSGEYRCVASN 204
DI C+V G P P V W K+G VI +D +++I + + L + +D G Y+C+A N
Sbjct: 1 DIVFECEVTGKPTPTVKWVKNGDMVIPSD--YFKIVKEHNLQVLGLVKSDEGFYQCIAEN 58
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71 |
| >gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 20/173 (11%)
Query: 344 KIAELTGLPFKSA-PNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLG 402
+ AEL G F + N +A++ D ++E A + V L ++A D+ +S P G
Sbjct: 212 RTAELLG--FDAVTRNSLDAVSDRDFILEFLSAAALIMVHLSRLAEDLILWSS-PEFGFI 268
Query: 403 ELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVA---VTIGGSNG-HFELNVFKP 458
EL E GSSIMP K NP E + A +V+G + G + +L K
Sbjct: 269 ELP-DEFSTGSSIMPQKKNPDVLELIRGKAGRVIGALTGLLTIMKGLPLAYNRDLQEDKE 327
Query: 459 LI---VSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALN 508
+ V + S+R++A VSG+ N+E + T L
Sbjct: 328 PLFDSVDTLEDSLRVLAG--------MVSGLTVNKERMREAAEAGFSTATDLA 372
|
Length = 459 |
| >gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 148 SIPCDVDGYPIPQVFWYKDGQVI-ENDGVHYRITESNR--------LHINQANATDSGEY 198
IP V G P P + WY +G V+ E+D + I L + ++G Y
Sbjct: 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNY 61
Query: 199 RCVASNSYTSDENAVT 214
VASN Y D +++
Sbjct: 62 TLVASNEYGQDSKSIS 77
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 81 |
| >gnl|CDD|143272 cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 2e-05
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSY 206
+ IP GYP P+V WYK+GQ+I +++ L I + D+G Y V +N
Sbjct: 1 VKIPVKYYGYPPPEVKWYKNGQLIV---LNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPI 57
Query: 207 TSDENAVTI 215
T +E T
Sbjct: 58 TKEEQRHTF 66
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. Length = 70 |
| >gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 2e-05
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 140 VFGVGSD---ISIPCDVDGYPIPQVFWYKDGQVIENDG-VHYRITESNRLHINQANATDS 195
+F SD + + C+ G P+P W ++G I+ + Y + + N + N + DS
Sbjct: 12 IFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDS 71
Query: 196 GEYRCVASNSYTS 208
G Y+C+A+NS S
Sbjct: 72 GRYQCLATNSIGS 84
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94 |
| >gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate cycloisomerase | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 34/96 (35%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 342 AAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGL 401
AA +A GLP + P D + E AL VA +L KIA DI L+ + +
Sbjct: 203 AAALAARLGLPLPALPWH----TQRDRIAEFGSALALVAGALGKIAGDIALLS---QTEV 255
Query: 402 GELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMG 437
GE+ GSS MP K NP L A +V G
Sbjct: 256 GEV-FEAGGGGSSAMPHKRNPVGAALLAAAARRVPG 290
|
Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate [Energy metabolism, Other]. Length = 338 |
| >gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 3e-05
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVAS 203
G + C+ GYP P + W K G + D H + S L I++ D G+Y C A
Sbjct: 2 GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRH-LVLSSGTLRISRVALHDQGQYECQAV 60
Query: 204 NSYTSDENAVTIRV 217
N S + V
Sbjct: 61 NIVGSQRTVAQLTV 74
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74 |
| >gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 4e-05
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDG-VHYRITESNRLHINQANATDSGEYRCVA 202
G D+ I C P P + W K +++ N + I L I +D G+Y C A
Sbjct: 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRIC--IWPDGSLEILNVTKSDEGKYTCFA 58
Query: 203 SN 204
N
Sbjct: 59 EN 60
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73 |
| >gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-05
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR----LHINQANATDSGEY 198
GS + + C G P P + W KDG+ + + + + L + +DSG+Y
Sbjct: 8 AGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRI-GGYKVRKKKWTLILESVVPSDSGKY 66
Query: 199 RCVASNSYTS 208
C+ N Y S
Sbjct: 67 TCIVENKYGS 76
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85 |
| >gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 7e-05
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 148 SIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI--TESNRLHINQANATDSGEYRCVASNS 205
++ C G P P++ W+KD ++ + RI S L I + +D G+Y CVA+NS
Sbjct: 2 TMLCAASGNPDPEITWFKDFLPVDTTS-NGRIKQLRSGALQIENSEESDQGKYECVATNS 60
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74 |
| >gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 8e-05
Identities = 48/226 (21%), Positives = 98/226 (43%), Gaps = 17/226 (7%)
Query: 344 KIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGE 403
++ E+ G+ + + + D +E +N ++V+L KIA +IR L + E
Sbjct: 208 RVMEILGIYSEIGSTQ---IVNRDRYIEYLSVINGISVTLEKIATEIRNLQRPEIDEVSE 264
Query: 404 LSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSN 463
E++ GSS MP KVNP E + ++ + + G H E ++ +
Sbjct: 265 YFDEESQVGSSSMPSKVNPINSENVVSLSRFIRSLIIPEYEAGVTWH-ERDLTNSALERF 323
Query: 464 VLRSIRLIADSATAFTDKCVSGIVANEENIHRLLH--ESLM---LVTALNP-----HIGY 513
+ ++ D + +S ++ E+ I R L +S+M +V AL +
Sbjct: 324 TIPYASILIDYVLYNMNDVLSHLIIKEDEIRRNLESDDSIMSESIVRALTLSGMPRQDAH 383
Query: 514 DKAAKIAKTAHKEGTTLKVAALKLG---YLTEEEFNKWVVPEDMLG 556
+ + + A G +LK + ++ G Y+ E+ ++ + P + +G
Sbjct: 384 EFVRRASMEARSNGKSLKSSLIEAGILKYIDEKTLDRAMDPANFIG 429
|
Length = 451 |
| >gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 345 IAELTGLPFKSA-PNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGE 403
+AEL G F + N +A++ D ++E+ + V L + A D+ ++G G
Sbjct: 210 LAELLG--FDAVTENSLDAVSDRDFILELLFVAALIMVHLSRFAEDLILWSTGE---FGF 264
Query: 404 LSLP-ENEPGSSIMPGKVNPTQCEALTMVAAQVMGN 438
+ LP E GSSIMP K NP E + +V GN
Sbjct: 265 VELPDEFSSGSSIMPQKKNPDVAELIRGKTGRVQGN 300
|
This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens [Amino acid biosynthesis, Glutamate family]. Length = 455 |
| >gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 1e-04
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSY 206
+ +P V YP P++ WYK+G++I + + L I D+G Y V +N
Sbjct: 1 VRLPVKVKAYPPPEIQWYKNGKLISEK--NRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQ 58
Query: 207 TSDENAVTI 215
E +T
Sbjct: 59 AKLEKRLTF 67
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71 |
| >gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 2e-04
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIE-NDGVHYRIT-ESNR---LHINQANATDSGEY 198
G +++ C V G P P+V W+K+ Q IE ++ HY + E + L I + DSG+Y
Sbjct: 16 GKTLNLTCTVFGNPDPEVIWFKNDQDIELSE--HYSVKLEQGKYASLTIKGVTSEDSGKY 73
Query: 199 RCVASNSYTSDENAVTIRV 217
N Y + VT+ V
Sbjct: 74 SINVKNKYGGETVDVTVSV 92
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92 |
| >gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 2e-04
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 147 ISIPCDVDGYPIPQVFWYK-DGQVIENDGVHYRITESNR-LHINQANATDSGEYRCVASN 204
+ + C +G P P+V W + DG + N + +N+ L ++ +D GEY C A N
Sbjct: 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT---KKLNNNKTLQLDNVLESDDGEYVCTAEN 57
Query: 205 SYTSDENAVTIRVE 218
S S + T+ VE
Sbjct: 58 SEGSARHHYTVTVE 71
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71 |
| >gnl|CDD|143305 cd05897, Ig2_IL1R2_like, Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 160 QVFWYKDGQVIENDGVH-YRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
++ WYKD +++ D Y + S LHI + DSG Y C ++ + +T ++
Sbjct: 31 ELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYNITRIIK 90
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. Length = 95 |
| >gnl|CDD|143180 cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 2e-04
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 135 TLETQVFGV-GSDISIPCDVDGYPIPQVFWYKDGQVI---ENDGVHYRITESNRLHINQA 190
E V V G+ + + C + V W G + E +TE L I
Sbjct: 1 AEEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLL-IRSV 58
Query: 191 NATDSGEYRCVA 202
+ D+G Y C +
Sbjct: 59 SPADAGVYTCQS 70
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. Length = 89 |
| >gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 58/216 (26%), Positives = 86/216 (39%), Gaps = 48/216 (22%)
Query: 342 AAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGL 401
A +A L + P D + E + AL +A +L KIA D+ L + +
Sbjct: 212 AQALAAELQLALPALPWH----TQRDRIAEFASALGLLAGTLGKIARDVSLLM---QTEV 264
Query: 402 GELSLP--ENEPGSSIMPGKVNPTQCEAL------------TMVAAQVMGNHVAVTIGGS 447
GE+ P + GSS MP K NP C A+ T+ AA + A+ GG
Sbjct: 265 GEVFEPAAAGKGGSSTMPHKRNPVGCAAVLTAATRAPGLVATLFAAMPQEHERAL--GGW 322
Query: 448 NGHFELNVFKPLIVSNVLRSIRLIADSATAFTDKCVSGI-------VANEENIHRL-LHE 499
+ ++ L + +A A A + V G+ AN + H L L E
Sbjct: 323 HAEWD-----------TLPELACLAAGALAQMAQIVEGLEVDAARMRANLDLTHGLILAE 371
Query: 500 SLMLVTALNPHIGYDKAAKI----AKTAHKEGTTLK 531
++ML AL IG A + +K A EG L+
Sbjct: 372 AVML--ALADRIGRLDAHHLVEQASKRAVAEGRHLR 405
|
Length = 452 |
| >gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 3e-04
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIEN-----DGVHYRITESNR---LHINQANATDSGEY 198
I++ C+ G PIP + W + I + DG H + R L + TD+GEY
Sbjct: 20 ITLTCEASGDPIPSITWRTSTRNISSEEKTLDG-HIVVRSHARVSSLTLKYIQYTDAGEY 78
Query: 199 RCVASNSYTSDENAVTIRV 217
C ASN+ D ++ + V
Sbjct: 79 LCTASNTIGQDSQSMYLEV 97
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97 |
| >gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 3e-04
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 140 VFGVGSD---ISIPCDVDGYPIPQVFWYKDGQVIEND-GVHYRITESNRLHINQANATDS 195
+F SD +S+ C G P P W +G I+++ Y + N + N + A D+
Sbjct: 12 IFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDA 71
Query: 196 GEYRCVASNSY 206
G Y+C+ASN
Sbjct: 72 GRYQCLASNIV 82
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91 |
| >gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 4e-04
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN----RLHINQANATDSGEYRCVA 202
+ + C V P PQ+FW K+ +++ + + + N L I AN D+G Y A
Sbjct: 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSA 60
Query: 203 SN 204
N
Sbjct: 61 VN 62
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75 |
| >gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase (argininosuccinase, ASAL) | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 5e-04
Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 22/171 (12%)
Query: 346 AELTGLPFKS-APNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGEL 404
AEL G F N +A++ D ++E A + V L ++A D+ ++ G +
Sbjct: 191 AELLG--FDGPTENSLDAVSDRDFVLEFLSAAALLMVHLSRLAEDLILWSTQEF---GFV 245
Query: 405 SLPEN-EPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAV--TIGG--SNGHFELNVFKPL 459
LP+ GSSIMP K NP E + A +V+G + T+ G + +L K
Sbjct: 246 ELPDAYSTGSSIMPQKKNPDVLELIRGKAGRVIGALAGLLTTLKGLPLAYNKDLQEDKEP 305
Query: 460 I---VSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTAL 507
+ V ++ S+RL+ +S + N E + T L
Sbjct: 306 LFDAVDTLIASLRLLTG--------VISTLTVNPERMREAAEAGFSTATDL 348
|
This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication. In humans, mutations in ASAL result in the autosomal recessive disorder argininosuccinic aciduria. Length = 435 |
| >gnl|CDD|143229 cd05752, Ig1_FcgammaR_like, Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 5e-04
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 151 CDVDGYP-IPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD 209
C+ P WY +G+++E YRI +A DSGEYRC S SD
Sbjct: 22 CNGFNSPEQNSTQWYHNGKLLETTTNSYRI---------RAANNDSGEYRCQTQGSSLSD 72
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. Length = 78 |
| >gnl|CDD|143230 cd05753, Ig2_FcgammaR_like, Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 5e-04
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 157 PIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRC---VASNSYTSDENAV 213
P+ +V +Y+DG+ Y ++ L I QA +DSG Y C + S Y+S+ ++
Sbjct: 28 PVYKVTYYRDGK-----AKKYS-HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSI 81
Query: 214 TI 215
T+
Sbjct: 82 TV 83
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. Length = 83 |
| >gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 6e-04
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIEND----GVHYRITESNRLHI-----NQANAT 193
G ++ C +G P P + W K+GQ +E D H + S L + +
Sbjct: 15 KGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRS 74
Query: 194 DSGEYRCVASNS 205
D G Y CVA NS
Sbjct: 75 DEGVYVCVAHNS 86
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100 |
| >gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 7e-04
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 15/66 (22%)
Query: 149 IPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH---------INQANATDSGEYR 199
+ C G+P PQ+ W KDG G + R+H I D+G Y
Sbjct: 3 LECAATGHPTPQIAWQKDG------GTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYS 56
Query: 200 CVASNS 205
C A N+
Sbjct: 57 CTAQNT 62
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75 |
| >gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1 | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 8e-04
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 367 DALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQ 424
D E L +A +L KIA +IR L R + E+ P + + GSS MP K NP
Sbjct: 214 DRHAEYLSTLALIASTLEKIATEIRHLQ---RTEVLEVEEPFSKGQKGSSAMPHKRNPIL 270
Query: 425 CEALTMVA 432
E + +A
Sbjct: 271 SENICGLA 278
|
This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). Length = 387 |
| >gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 357 PNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPEN-EPGSSI 415
N +A++ D ++E A + A+ L ++ + AS G ++ + GSSI
Sbjct: 237 RNSIDAVSDRDFVLEFLFANSITAIHLSRLGEEWVLWASEE---FGFVTPSDAVSTGSSI 293
Query: 416 MPGKVNPTQCEALTMVAAQVMGNHVAVT 443
MP K NP E + +A+V+G+ V V
Sbjct: 294 MPQKKNPDPMELVRGKSARVIGDLVTVL 321
|
Length = 474 |
| >gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.001
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVA 202
VGS + + C G P P + W KD + + + + L + DSG+Y C
Sbjct: 8 VGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHV 67
Query: 203 SN 204
SN
Sbjct: 68 SN 69
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82 |
| >gnl|CDD|143303 cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Score = 37.3 bits (86), Expect = 0.001
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 156 YPIPQVFWYKDGQVI------ENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD 209
YP + W+K+G+ I +N + +S+ L I++A+ D+GEY+C+ S+ +D
Sbjct: 11 YPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGND 70
Query: 210 ENAVTI 215
+
Sbjct: 71 SVTANV 76
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. Length = 76 |
| >gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Score = 37.1 bits (86), Expect = 0.002
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIEN-----DGVHYRITESN--RLHINQANATDSG 196
G S CDV G P P++ W K EN + V + +N +L I A D+G
Sbjct: 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAG 60
Query: 197 EYRCVASNS 205
Y C A NS
Sbjct: 61 LYTCTARNS 69
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81 |
| >gnl|CDD|143263 cd05855, Ig_TrkB_d5, Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Score = 36.7 bits (85), Expect = 0.003
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 149 IPCDVDGYPIPQVFWYKDGQVI-ENDGVHYRITESNR------LHINQANATDSGEYRCV 201
IP V G P P + W+ +G ++ E++ + +I N L ++ ++G Y V
Sbjct: 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLV 62
Query: 202 ASNSYTSDENAVT 214
A N Y DE V+
Sbjct: 63 AKNEYGEDEKNVS 75
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. Length = 79 |
| >gnl|CDD|143176 cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.003
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 132 VNITLE---TQVFGVGSDISIPCDVDGYP-IPQVFWYKDGQVIENDGVHY--RITESN-- 183
+N++ E T +G ++++ +V+ YP P + W D + + N ES
Sbjct: 3 INLSPEQNTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYR 62
Query: 184 ---RLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
L + + +++G Y +ASNS ++T +
Sbjct: 63 YVSELKLVRLKESEAGTYTFLASNS--DASKSLTFELY 98
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta, binds only to PDGF-B. In mice, PDGFR alpha, and PDGFR beta, are essential for normal development. Length = 101 |
| >gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.004
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR-LHINQANATDSGEYRCVA 202
G + C+ +G P P + W +G IE R L ++ D+ Y+C A
Sbjct: 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNA 60
Query: 203 SNSY 206
SN +
Sbjct: 61 SNVH 64
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 558 | |||
| PRK12425 | 464 | fumarate hydratase; Provisional | 100.0 | |
| PRK00485 | 464 | fumC fumarate hydratase; Reviewed | 100.0 | |
| COG0114 | 462 | FumC Fumarase [Energy production and conversion] | 100.0 | |
| PLN00134 | 458 | fumarate hydratase; Provisional | 100.0 | |
| TIGR00979 | 458 | fumC_II fumarate hydratase, class II. Putative fum | 100.0 | |
| COG1027 | 471 | AspA Aspartate ammonia-lyase [Amino acid transport | 100.0 | |
| PRK13353 | 473 | aspartate ammonia-lyase; Provisional | 100.0 | |
| PRK12273 | 472 | aspA aspartate ammonia-lyase; Provisional | 100.0 | |
| cd01362 | 455 | Fumarase_classII Class II fumarases. This subgroup | 100.0 | |
| PRK14515 | 479 | aspartate ammonia-lyase; Provisional | 100.0 | |
| TIGR00839 | 468 | aspA aspartate ammonia-lyase. Fumarate hydratase s | 100.0 | |
| COG0015 | 438 | PurB Adenylosuccinate lyase [Nucleotide transport | 100.0 | |
| cd01357 | 450 | Aspartase Aspartase. This subgroup contains Escher | 100.0 | |
| cd01596 | 450 | Aspartase_like aspartase (L-aspartate ammonia-lyas | 100.0 | |
| PRK09053 | 452 | 3-carboxy-cis,cis-muconate cycloisomerase; Provisi | 100.0 | |
| PRK08470 | 442 | adenylosuccinate lyase; Provisional | 100.0 | |
| PRK07492 | 435 | adenylosuccinate lyase; Provisional | 100.0 | |
| PRK07380 | 431 | adenylosuccinate lyase; Provisional | 100.0 | |
| cd03302 | 436 | Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL | 100.0 | |
| cd01597 | 437 | pCLME prokaryotic 3-carboxy-cis,cis-muconate cyclo | 100.0 | |
| COG0165 | 459 | ArgH Argininosuccinate lyase [Amino acid transport | 100.0 | |
| KOG1317|consensus | 487 | 100.0 | ||
| TIGR00928 | 435 | purB adenylosuccinate lyase. This family consists | 100.0 | |
| PRK08540 | 449 | adenylosuccinate lyase; Reviewed | 100.0 | |
| PRK06705 | 502 | argininosuccinate lyase; Provisional | 100.0 | |
| PRK06390 | 451 | adenylosuccinate lyase; Provisional | 100.0 | |
| PLN02646 | 474 | argininosuccinate lyase | 100.0 | |
| cd01359 | 435 | Argininosuccinate_lyase Argininosuccinate lyase (a | 100.0 | |
| TIGR00838 | 455 | argH argininosuccinate lyase. This model describes | 100.0 | |
| cd01595 | 381 | Adenylsuccinate_lyase_like Adenylsuccinate lyase ( | 100.0 | |
| PRK09285 | 456 | adenylosuccinate lyase; Provisional | 100.0 | |
| cd01360 | 387 | Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL | 100.0 | |
| PRK00855 | 459 | argininosuccinate lyase; Provisional | 100.0 | |
| PRK04833 | 455 | argininosuccinate lyase; Provisional | 100.0 | |
| PRK12308 | 614 | bifunctional argininosuccinate lyase/N-acetylgluta | 100.0 | |
| cd01598 | 425 | PurB PurB_like adenylosuccinases (adenylsuccinate | 100.0 | |
| KOG1316|consensus | 464 | 100.0 | ||
| PRK02186 | 887 | argininosuccinate lyase; Provisional | 100.0 | |
| PLN02848 | 458 | adenylosuccinate lyase | 100.0 | |
| PRK06389 | 434 | argininosuccinate lyase; Provisional | 100.0 | |
| PRK05975 | 351 | 3-carboxy-cis,cis-muconate cycloisomerase; Provisi | 100.0 | |
| TIGR02426 | 338 | protocat_pcaB 3-carboxy-cis,cis-muconate cycloisom | 100.0 | |
| cd01334 | 325 | Lyase_I Lyase class I family; a group of proteins | 100.0 | |
| KOG2700|consensus | 481 | 100.0 | ||
| PF00206 | 312 | Lyase_1: Lyase; InterPro: IPR022761 This entry rep | 100.0 | |
| PRK08937 | 216 | adenylosuccinate lyase; Provisional | 100.0 | |
| KOG3513|consensus | 1051 | 99.94 | ||
| KOG3513|consensus | 1051 | 99.94 | ||
| KOG4221|consensus | 1381 | 99.9 | ||
| cd01594 | 231 | Lyase_I_like Lyase class I_like superfamily: conta | 99.85 | |
| KOG4222|consensus | 1281 | 99.84 | ||
| KOG4194|consensus | 873 | 99.83 | ||
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 99.81 | |
| KOG4221|consensus | 1381 | 99.81 | ||
| KOG4222|consensus | 1281 | 99.78 | ||
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 99.73 | |
| KOG4194|consensus | 873 | 99.7 | ||
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 99.7 | |
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 99.69 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 99.67 | |
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 99.66 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 99.66 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 99.64 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 99.64 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 99.63 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 99.62 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 99.62 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 99.62 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 99.61 | |
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 99.61 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 99.61 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 99.6 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 99.6 | |
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 99.6 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 99.59 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 99.58 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 99.58 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 99.58 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 99.57 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 99.57 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 99.56 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 99.56 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 99.56 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 99.56 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 99.56 | |
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 99.56 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 99.56 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 99.55 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 99.55 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 99.55 | |
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 99.55 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 99.55 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 99.54 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 99.54 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 99.53 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 99.53 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 99.53 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 99.53 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 99.53 | |
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 99.52 | |
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 99.52 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 99.52 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 99.52 | |
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 99.51 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 99.51 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 99.51 | |
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 99.51 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 99.51 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 99.49 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 99.49 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 99.49 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 99.49 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 99.49 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 99.48 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 99.47 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 99.47 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 99.47 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 99.47 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 99.45 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 99.44 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 99.44 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 99.43 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 99.42 | |
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 99.42 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 99.41 | |
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 99.41 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 99.4 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 99.39 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 99.36 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 99.36 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 99.35 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 99.34 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 99.34 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 99.33 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 99.32 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 99.31 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 99.31 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 99.28 | |
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 99.27 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 99.27 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 99.26 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 99.26 | |
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 99.24 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 99.23 | |
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 99.22 | |
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 99.22 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 99.2 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 99.2 | |
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 99.18 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 99.16 | |
| PF10415 | 55 | FumaraseC_C: Fumarase C C-terminus; InterPro: IPR0 | 99.14 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 99.11 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 99.08 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 99.02 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 99.01 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 98.99 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 98.99 | |
| smart00409 | 86 | IG Immunoglobulin. | 98.94 | |
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 98.94 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 98.93 | |
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 98.9 | |
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 98.86 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 98.83 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 98.82 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 98.79 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 98.78 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 98.77 | |
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 98.7 | |
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 98.66 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 98.64 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 98.63 | |
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 98.61 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 98.57 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 98.53 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 98.52 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 98.48 | |
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 98.47 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 98.39 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 98.38 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 98.36 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 98.36 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 98.36 | |
| PHA03376 | 221 | BARF1; Provisional | 98.35 | |
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 98.34 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 98.27 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 98.26 | |
| cd05883 | 82 | Ig2_Necl-2 Second immunoglobulin (Ig)-like domain | 98.26 | |
| cd05755 | 100 | Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do | 98.26 | |
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 98.26 | |
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 98.24 | |
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 98.24 | |
| PF10397 | 81 | ADSL_C: Adenylosuccinate lyase C-terminus; InterPr | 98.21 | |
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 98.21 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 98.19 | |
| cd05761 | 82 | Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like | 98.18 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 98.17 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 98.16 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 98.16 | |
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 98.16 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 98.15 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 98.15 | |
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 98.15 | |
| KOG3515|consensus | 741 | 98.14 | ||
| cd07705 | 83 | Ig2_Necl-1 Second immunoglobulin (Ig)-like domain | 98.13 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 98.12 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 98.12 | |
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 98.11 | |
| cd00098 | 95 | IgC Immunoglobulin Constant domain. IgC: Immunoglo | 98.11 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 98.1 | |
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 98.08 | |
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 98.07 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 98.07 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 98.07 | |
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 98.07 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 98.06 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 98.04 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 98.04 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 98.01 | |
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 98.01 | |
| KOG3515|consensus | 741 | 98.0 | ||
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 98.0 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 98.0 | |
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 97.98 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 97.98 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 97.97 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 97.97 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 97.94 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 97.93 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 97.93 | |
| cd05884 | 83 | Ig2_Necl-3 Second immunoglobulin (Ig)-like domain | 97.92 | |
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 97.92 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 97.91 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 97.9 | |
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 97.9 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 97.9 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 97.9 | |
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 97.89 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 97.89 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 97.89 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 97.88 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 97.88 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 97.86 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 97.85 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 97.84 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 97.84 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 97.81 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 97.81 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 97.81 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 97.8 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 97.79 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 97.77 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 97.77 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 97.77 | |
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 97.75 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 97.75 | |
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 97.74 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 97.73 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 97.73 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 97.73 | |
| PF08328 | 115 | ASL_C: Adenylosuccinate lyase C-terminal; InterPro | 97.71 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 97.7 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 97.69 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 97.69 | |
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 97.68 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 97.68 | |
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 97.66 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 97.65 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 97.65 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 97.65 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 97.64 | |
| cd07698 | 93 | IgC_MHC_I_alpha3 Class I major histocompatibility | 97.63 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 97.63 | |
| PF14698 | 70 | ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1 | 97.62 | |
| PF08205 | 89 | C2-set_2: CD80-like C2-set immunoglobulin domain ; | 97.61 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 97.61 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 97.59 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 97.58 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 97.57 | |
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 97.57 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 97.56 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 97.55 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 97.55 | |
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 97.52 | |
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 97.51 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 97.5 | |
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 97.5 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 97.5 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 97.5 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 97.48 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 97.47 | |
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 97.47 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 97.46 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 97.45 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 97.45 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 97.45 | |
| smart00407 | 75 | IGc1 Immunoglobulin C-Type. | 97.44 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 97.43 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 97.42 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 97.42 | |
| PHA03376 | 221 | BARF1; Provisional | 97.42 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 97.41 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 97.4 | |
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 97.39 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 97.39 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 97.38 | |
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 97.37 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 97.36 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 97.32 | |
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 97.32 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 97.3 | |
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 97.3 | |
| cd05772 | 111 | IgC_SIRP Signal-regulatory protein (SIRP) immunogl | 97.28 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 97.26 | |
| cd05719 | 95 | Ig2_PVR_like Second immunoglobulin (Ig) domain of | 97.25 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 97.24 | |
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 97.23 | |
| cd07692 | 65 | Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of | 97.23 | |
| cd07699 | 100 | IgC_L Immunoglobulin Constant domain. IgC_L: Immun | 97.22 | |
| PHA02633 | 63 | hypothetical protein; Provisional | 97.21 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 97.14 | |
| cd05770 | 93 | IgC_beta2m Class I major histocompatibility comple | 97.14 | |
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 97.14 | |
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 97.14 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 97.1 | |
| cd05767 | 94 | IgC_MHC_II_alpha Class II major histocompatibility | 97.1 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 97.07 | |
| PHA02914 | 500 | Immunoglobulin-like domain protein; Provisional | 97.07 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 97.03 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 96.99 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 96.98 | |
| cd07691 | 69 | Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain | 96.97 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 96.97 | |
| cd05766 | 94 | IgC_MHC_II_beta Class II major histocompatibility | 96.97 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 96.97 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 96.94 | |
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 96.9 | |
| cd05768 | 102 | IgC_CH4 CH4 domain (fourth constant Ig domain of t | 96.9 | |
| cd07703 | 95 | Ig2_Nectin-2_like Second immunoglobulin (Ig) domai | 96.87 | |
| cd05847 | 94 | IgC_CH2_IgE CH2 domain (second constant Ig domain | 96.87 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 96.84 | |
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 96.83 | |
| PHA02633 | 63 | hypothetical protein; Provisional | 96.83 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 96.75 | |
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 96.74 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 96.7 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 96.65 | |
| cd07696 | 96 | IgC_CH3 CH3 domain (third constant Ig domain of th | 96.63 | |
| cd05721 | 115 | IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic | 96.59 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 96.58 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 96.58 | |
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 96.54 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 96.52 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 96.46 | |
| PF07654 | 83 | C1-set: Immunoglobulin C1-set domain; InterPro: IP | 96.35 | |
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 96.33 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 96.32 | |
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 96.29 | |
| cd07697 | 96 | IgC_TCR_gamma T cell receptor (TCR) gamma chain co | 96.29 | |
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 96.27 | |
| cd05769 | 115 | IgC_TCR_beta T cell receptor (TCR) beta chain cons | 96.23 | |
| cd07704 | 97 | Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom | 96.21 | |
| PF07354 | 271 | Sp38: Zona-pellucida-binding protein (Sp38); Inter | 96.14 | |
| PHA03273 | 486 | envelope glycoprotein C; Provisional | 96.03 | |
| cd04985 | 95 | IgC_CH1 CH1 domain (first constant Ig domain of th | 96.0 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 95.92 | |
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 95.91 | |
| KOG1480|consensus | 909 | 95.91 | ||
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 95.9 | |
| smart00409 | 86 | IG Immunoglobulin. | 95.9 | |
| PF08204 | 130 | V-set_CD47: CD47 immunoglobulin-like domain; Inter | 95.89 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 95.74 | |
| cd04986 | 99 | IgC_CH2 CH2 domain (second constant Ig domain of t | 95.65 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 95.53 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 95.38 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 95.31 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 95.18 | |
| PHA03270 | 466 | envelope glycoprotein C; Provisional | 95.15 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 95.06 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 95.01 | |
| KOG4597|consensus | 560 | 94.94 | ||
| cd07689 | 99 | Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain | 94.74 | |
| PHA03269 | 566 | envelope glycoprotein C; Provisional | 94.18 | |
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 93.93 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 93.92 | |
| PF11465 | 108 | Receptor_2B4: Natural killer cell receptor 2B4; In | 93.83 | |
| PHA03042 | 286 | CD47-like protein; Provisional | 93.64 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 93.05 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 92.86 | |
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 92.79 | |
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 92.63 | |
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 92.21 | |
| PF11465 | 108 | Receptor_2B4: Natural killer cell receptor 2B4; In | 92.02 | |
| PHA03271 | 490 | envelope glycoprotein C; Provisional | 91.51 | |
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 91.46 | |
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 91.27 | |
| PF05790 | 80 | C2-set: Immunoglobulin C2-set domain; InterPro: IP | 91.09 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 91.04 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 90.99 | |
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 90.21 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 89.93 | |
| PHA02982 | 251 | hypothetical protein; Provisional | 89.85 | |
| PF06328 | 89 | Lep_receptor_Ig: Ig-like C2-type domain; InterPro: | 89.13 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 88.68 | |
| PF02480 | 439 | Herpes_gE: Alphaherpesvirus glycoprotein E; InterP | 88.07 | |
| PHA03283 | 542 | envelope glycoprotein E; Provisional | 87.37 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 86.14 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 83.91 | |
| PHA02982 | 251 | hypothetical protein; Provisional | 83.32 | |
| PHA02865 | 338 | MHC-like TNF binding protein; Provisional | 82.91 | |
| PF06832 | 89 | BiPBP_C: Penicillin-Binding Protein C-terminus Fam | 82.66 | |
| KOG0613|consensus | 1205 | 81.5 | ||
| PHA03052 | 69 | Hypothetical protein; Provisional | 80.48 |
| >PRK12425 fumarate hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-60 Score=478.85 Aligned_cols=315 Identities=47% Similarity=0.723 Sum_probs=283.3
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcc-cccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhcccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYG-PHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNL 311 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~-~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l 311 (558)
..++|.|.+.+|+..++.. ...+..+ ..+...+.. ...+ .+++|.||||+|+|+|+|+||++++ |++.|
T Consensus 129 n~~vh~g~S~ND~~~Ta~~-L~~r~~l~~~l~~~L~~l~~~L~~~A~~~~~tim~GrTHlQ~A~PiT~G~~~~a-~~~~l 206 (464)
T PRK12425 129 NDHVNRSQSSNDCFPTAMH-IAAAQAVHEQLLPAIAELSGGLAEQSARHAKLVKTGRTHMMDATPITFGQELSA-FVAQL 206 (464)
T ss_pred hhcccCCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecccccccCccchHHHHHHH-HHHHH
Confidence 4568888999998888765 3334443 233333222 2233 7899999999999999999999998 99999
Q ss_pred cchHHHHHhHhhhhhhh----cCCCCChhH----HHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHH
Q psy10160 312 DPNDRQALNIVSIFYFT----YLVKLSELL----ETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSL 383 (558)
Q Consensus 312 ~~~~~~l~~~~~~~~~~----g~~g~~~~~----~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l 383 (558)
.|+++||++++.+++.+ ||+||+... ++.+.+.||+.|||+.++.+|++|++++||+++|++++|++++++|
T Consensus 207 ~rd~~RL~~~~~r~~~~plGggAvGT~~~~~~~~~~~~~~~La~~LG~~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L 286 (464)
T PRK12425 207 DYAERAIRAALPAVCELAQGGTAVGTGLNAPHGFAEAIAAELAALSGLPFVTAPNKFAALAGHEPLVSLSGALKTLAVAL 286 (464)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchhcCcccCCccHHHHHHHHHHHHhCCCCcccccHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 99999999888776654 367776554 4567888999999998789999999999999999999999999999
Q ss_pred HHHhhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHH
Q psy10160 384 MKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSN 463 (558)
Q Consensus 384 ~k~a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (558)
+|||+||++|+|||++||||+.+|+.++|||||||||||+.+|.++++|++++|++.+++..+.+++++.+.+.+.+...
T Consensus 287 ~kia~Dl~llsS~p~~g~~ei~lp~~~~GSSiMPqK~NP~~~E~i~~~a~~v~G~~~~v~~~~~~~~~q~n~~~~~~~~~ 366 (464)
T PRK12425 287 MKIANDLRLLGSGPRAGLAEVRLPANEPGSSIMPGKVNPTQCEALSMLACQVMGNDATIGFAASQGHLQLNVFKPVIIHN 366 (464)
T ss_pred HHHHHHHHHHccCccCCceEEECCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhhhcchHHHHH
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999888988899
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHH
Q psy10160 464 VLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEE 543 (558)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~ 543 (558)
+|+++..+.++++.++.+++++|+||++||+++++.+++++|+|++.+||++||+++++|.++|++++|++.+...++++
T Consensus 367 ~l~s~~~l~~~~~~~~~~~i~~l~vn~erm~~~l~~~~~~at~L~~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~ 446 (464)
T PRK12425 367 LLQSIRLLADGCRNFQQHCVAGLEPDAEQMAAHLERGLMLVTALNPHIGYDKAAEIAKKAYAEGTTLREAALALGYLTDE 446 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcccHHHHHhhhccCHHHHHHHHHHHHHhCCCHHHHHHhcCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHhhhcCcccccCC
Q psy10160 544 EFNKWVVPEDMLGP 557 (558)
Q Consensus 544 ~~~~~~~p~~~~~~ 557 (558)
++++++||++|+++
T Consensus 447 el~~~ldP~~~~~~ 460 (464)
T PRK12425 447 QFDAWVRPENMLEA 460 (464)
T ss_pred HHHHHcCHHHhcCC
Confidence 99999999999986
|
|
| >PRK00485 fumC fumarate hydratase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=480.02 Aligned_cols=316 Identities=58% Similarity=0.815 Sum_probs=285.0
Q ss_pred eceeeecccceeEEEEeccCCCCCCCcc-cccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhccccccc
Q psy10160 240 EGRYCQHHYYSQFCCESCTRAGQLPSYG-PHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVN 310 (558)
Q Consensus 240 ~~~~~~~g~~~~~~c~~~~~~g~~~~~~-~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~ 310 (558)
.+.++|+|.+.+|+..++.. ...+... ..+...+.. ...+ .+++|.||||+|+|+|+|||||+++ |++.
T Consensus 130 ~~~~vh~G~SrnD~v~Ta~~-L~lr~~l~~~l~~~l~~l~~~L~~~A~~~~dt~m~GrTH~Q~A~PiTfG~~~~~-~~~~ 207 (464)
T PRK00485 130 PNDHVNMSQSSNDTFPTAMH-IAAVLAIVERLLPALEHLRDTLAAKAEEFADIVKIGRTHLQDATPLTLGQEFSG-YAAQ 207 (464)
T ss_pred ccccCCCCCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeeeecCcCceeeeHHHHHHH-HHHH
Confidence 36778899999999998876 4555554 343333332 2223 7899999999999999999999998 9999
Q ss_pred ccchHHHHHhHhhhh---hhhc-CCCCChhH----HHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHH
Q psy10160 311 LDPNDRQALNIVSIF---YFTY-LVKLSELL----ETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVS 382 (558)
Q Consensus 311 l~~~~~~l~~~~~~~---~~~g-~~g~~~~~----~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 382 (558)
|.|+++||.+++.++ +++| ++||+... ++.+.+++|+.|||+.++.+|++|++++||+++|++++|++++++
T Consensus 208 l~R~~~RL~~~~~r~~~~pLGg~AvGT~~~~~~~~~~~v~~~~A~~LGl~~~~~~n~~da~~~rD~~~e~~~~la~la~~ 287 (464)
T PRK00485 208 LEHGIERIEAALPHLYELALGGTAVGTGLNAHPGFAERVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVS 287 (464)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccccCCccCChhHHHHHHHHHHHHhCCCCccCcCHHHHHhccHHHHHHHHHHHHHHHH
Confidence 999999998776544 5565 67776544 346778999999999888999999999999999999999999999
Q ss_pred HHHHhhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHH
Q psy10160 383 LMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVS 462 (558)
Q Consensus 383 l~k~a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (558)
|+|||+||++|+|+|++|||||.+|++++|||||||||||+.+|+++++|+++.|++..++...+.+++|++...|...|
T Consensus 288 L~ria~Dl~l~ss~~~~e~gev~lp~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~~~~~e~~~~~~~~~~ 367 (464)
T PRK00485 288 LMKIANDIRWLASGPRCGLGEISLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNDAAVTFAGSQGNFELNVFKPVIAY 367 (464)
T ss_pred HHHHHHHHHHHcCCccCCCceEEcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhHHHHHHHhccCcccccccChHHHH
Confidence 99999999999999999999999999899999999999999999999999999999999988888999999999998899
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCH
Q psy10160 463 NVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTE 542 (558)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~ 542 (558)
.++++++.+.++++.++..++++|+||++||++|++.++.++|+||+.+||++||++++++.++|.++++++.+...+++
T Consensus 368 ~~~~~~~~l~~~~~~~~~~~l~~l~v~~erm~~~l~~~~~~~t~La~~lg~~~A~~~~~~a~~~g~~l~~~~~~~~~l~~ 447 (464)
T PRK00485 368 NFLQSIRLLADAMRSFADHCVVGIEPNRERIKELLERSLMLVTALNPHIGYDKAAKIAKKAHKEGLTLKEAALELGYLTE 447 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCCeeHHHhccccCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCH
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999888999
Q ss_pred HHHhhhcCcccccCC
Q psy10160 543 EEFNKWVVPEDMLGP 557 (558)
Q Consensus 543 ~~~~~~~~p~~~~~~ 557 (558)
+++++++||++|+++
T Consensus 448 ~~l~~~ldP~~~~~~ 462 (464)
T PRK00485 448 EEFDRWVDPEKMTGP 462 (464)
T ss_pred HHHHHHcCHHHhcCC
Confidence 999999999999987
|
|
| >COG0114 FumC Fumarase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-57 Score=425.55 Aligned_cols=297 Identities=59% Similarity=0.877 Sum_probs=281.1
Q ss_pred CCCCCcccccchhhhhhhhh-hhhhhcccccchhhhhhhHHHhhcccccccccchHHHHHhHhhh---hhhhc-C----C
Q psy10160 261 GQLPSYGPHIKRAVEAEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDPNDRQALNIVSI---FYFTY-L----V 331 (558)
Q Consensus 261 g~~~~~~~w~~~~l~~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~~~~~~l~~~~~~---~~~~g-~----~ 331 (558)
..+.|.+..+++.+.....+ .+++..||||+|+|.|.|+|++|.+ |+..|+..+++++..... +-++| + +
T Consensus 157 ~~LiPaL~~L~~~L~~Ka~~~~~iVKiGRTHLqDAtPlTlGQE~sG-y~~ql~~~~~~i~~~l~~l~eLAiGGTAVGTGl 235 (462)
T COG0114 157 NRLIPALKHLIKTLAAKAEEFADVVKIGRTHLQDATPLTLGQEFSG-YAAQLEHALERIEASLPHLYELAIGGTAVGTGL 235 (462)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhhcCcccccccCcchhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHccCCcccccCc
Confidence 46677777888888877777 9999999999999999999999999 999999999999876543 34455 3 5
Q ss_pred CCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCccccceecCCCCC
Q psy10160 332 KLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEP 411 (558)
Q Consensus 332 g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~d~~~~~s~~~~e~~e~~~~~~~~ 411 (558)
++.++|++++.+.+++..|+.+.+.+|.|.+.+++|.+++++++|..+|..|.|||+|||+|.||||+++||+.+|+.++
T Consensus 236 Na~p~f~ekva~~i~~~TG~~F~~a~NkF~al~~hd~lv~~~Gal~~lA~~L~KIAnDiR~l~SGPr~GLgEi~lPeneP 315 (462)
T COG0114 236 NAHPEFGEKVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALRTLAVSLMKIANDIRWLGSGPRCGLGEIELPENEP 315 (462)
T ss_pred CCCccHHHHHHHHHHHHhCCCcccCCcHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhcCcccCHH
Q psy10160 412 GSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIRLIADSATAFTDKCVSGIVANEE 491 (558)
Q Consensus 412 gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~ 491 (558)
||||||+|+||+.+|.+.+.|.+|+|+.+++..+...++||+|++.+++.+++|.++.++.+++..|.+.|+.+|++|++
T Consensus 316 GSSIMPGKVNPtq~EA~tmv~~QV~Gnd~ai~~ags~GnFELNv~~Pvi~~N~LqS~~LLada~~~f~~~ci~gie~n~~ 395 (462)
T COG0114 316 GSSIMPGKVNPTQCEALTMVAAQVIGNDAAIAFAGSQGNFELNVFKPVIAYNFLQSVRLLADAMRSFADHCIVGIEPNEE 395 (462)
T ss_pred CccCCCCCCCchhHHHHHHHHHHHHcchHHHHHhhccCceeeccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhhcCcccccCCC
Q psy10160 492 NIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558 (558)
Q Consensus 492 ~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~ 558 (558)
+|+++++.++|++|+|++.+||++|.+++|.|+++|++++|++.+.++++++|+++++||+.++++.
T Consensus 396 ~i~~~l~~SlmLVTaLnp~IGYdkAa~IAK~A~keg~tlreaa~~~G~lte~efd~~v~Pe~mv~~~ 462 (462)
T COG0114 396 RIKELLERSLMLVTALNPHIGYDKAAKIAKKAHKEGTTLREAALELGLLSEEEFDKLVDPEKMVGPG 462 (462)
T ss_pred HHHHHHhhCchHHHhcccccchHHHHHHHHHHHHCCCcHHHHHHHcCCCCHHHHHHhcCHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999864
|
|
| >PLN00134 fumarate hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-58 Score=465.08 Aligned_cols=314 Identities=58% Similarity=0.814 Sum_probs=279.2
Q ss_pred eeecccceeEEEEeccCCCCCC-Ccccccchhhh-------hhhhh-hhhhhcccccchhhhhhhHHHhhcccccccccc
Q psy10160 243 YCQHHYYSQFCCESCTRAGQLP-SYGPHIKRAVE-------AEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDP 313 (558)
Q Consensus 243 ~~~~g~~~~~~c~~~~~~g~~~-~~~~w~~~~l~-------~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~~ 313 (558)
.+|+|.+.+|+..++.. .... .....+...+. ....+ .+++|.||||+|+|+|+|+|||+++ |++.|.|
T Consensus 125 ~vh~G~S~nDiv~Ta~~-L~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~T~G~~~~~-~~~~l~r 202 (458)
T PLN00134 125 HVNRSQSSNDTFPTAMH-IAAATEIHSRLIPALKELHESLRAKSFEFKDIVKIGRTHLQDAVPLTLGQEFSG-YATQVKY 202 (458)
T ss_pred ccCCCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCeeecHHHHHHH-HHHHHHH
Confidence 35589999999988866 3333 21222222222 22233 7899999999999999999999998 9999999
Q ss_pred hHHHHHhHh---hhhhhhc-CCCCChhH----HHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHH
Q psy10160 314 NDRQALNIV---SIFYFTY-LVKLSELL----ETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMK 385 (558)
Q Consensus 314 ~~~~l~~~~---~~~~~~g-~~g~~~~~----~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k 385 (558)
+++||.+++ ..++++| ++||+... +..+.+++|+.|||+.+..+|++|++++||+++|++++|+.++++|+|
T Consensus 203 ~~~RL~~~~~~~~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~k 282 (458)
T PLN00134 203 GLNRVQCTLPRLYELAQGGTAVGTGLNTKKGFDEKIAAAVAEETGLPFVTAPNKFEALAAHDAFVELSGALNTVAVSLMK 282 (458)
T ss_pred HHHHHHHHHHHHHHhCCCCeeecCCccCChhHHHHHHHHHHHHhCCCCCCCccHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 999998766 4555666 67776543 356888999999999777899999999999999999999999999999
Q ss_pred HhhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHH
Q psy10160 386 IANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVL 465 (558)
Q Consensus 386 ~a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (558)
||+||++|+||||+||||+.+|+.++|||||||||||+.+|++++.|+++.|++.+++...++++++.+.+.+++.|.++
T Consensus 283 ia~Dl~llss~p~~e~gev~lp~~~~GSSiMP~KrNPv~~E~i~~~a~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~~l 362 (458)
T PLN00134 283 IANDIRLLGSGPRCGLGELNLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGSAGHFELNVFKPLIAYNLL 362 (458)
T ss_pred HHHHHHHHhccccCCcceEECCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhhccchHHHHHHH
Confidence 99999999999999999999999889999999999999999999999999999999987778889999888888899999
Q ss_pred HHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHH
Q psy10160 466 RSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEEEF 545 (558)
Q Consensus 466 ~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~~~ 545 (558)
+++..+.+++..++.+++++|+||++||+++++.+++++|+||+.+||++||+++++|.++|++++|++.+...|+++++
T Consensus 363 ~~~~~~~~~~~~~~~~~l~~l~vn~erm~~~l~~~~~l~~~La~~ig~~~A~~~~~~a~~~g~~l~e~~~~~~~l~~~el 442 (458)
T PLN00134 363 HSIRLLGDASASFRKNCVRGIEANRERISKLLHESLMLVTALNPKIGYDKAAAVAKKAHKEGTTLKEAALKLGVLTAEEF 442 (458)
T ss_pred HHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccchHHHhhhccCHHHHHHHHHHHHHhCCCHHHHHHhcCCCCHHHH
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999888999999
Q ss_pred hhhcCcccccCCC
Q psy10160 546 NKWVVPEDMLGPK 558 (558)
Q Consensus 546 ~~~~~p~~~~~~~ 558 (558)
++++||++|+|++
T Consensus 443 ~~~ldP~~~~~~~ 455 (458)
T PLN00134 443 DELVVPEKMTGPS 455 (458)
T ss_pred HHHcCHHHhcCCC
Confidence 9999999999863
|
|
| >TIGR00979 fumC_II fumarate hydratase, class II | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-58 Score=467.37 Aligned_cols=309 Identities=54% Similarity=0.790 Sum_probs=278.5
Q ss_pred cccceeEEEEeccCCCCCCCcc-cccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhcccccccccchHH
Q psy10160 246 HHYYSQFCCESCTRAGQLPSYG-PHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDPNDR 316 (558)
Q Consensus 246 ~g~~~~~~c~~~~~~g~~~~~~-~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~~~~~ 316 (558)
+|.+.+|+..++.. ...+... ..+...+.. ...+ ++++|.||||+|+|+|+||||++++ |++.|.|+++
T Consensus 133 ~G~S~nDiv~Ta~~-L~lr~~l~~~l~~~l~~l~~~L~~~A~~~~dt~m~GrTH~Q~A~P~TfG~~~~~-~~~~l~r~~~ 210 (458)
T TIGR00979 133 KSQSSNDTFPTAMH-IAAVLAIKNQLIPALENLKKTLDAKSKEFAHIVKIGRTHLQDATPLTLGQEFSG-YVAQLEHGLE 210 (458)
T ss_pred CCCCcccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeecccccccceeeeHHHHHHH-HHHHHHHHHH
Confidence 69999999998876 4444444 233333222 2223 7899999999999999999999998 9999999999
Q ss_pred HHHhHhh---hhhhhc-CCCCChhHH----HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhh
Q psy10160 317 QALNIVS---IFYFTY-LVKLSELLE----TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAN 388 (558)
Q Consensus 317 ~l~~~~~---~~~~~g-~~g~~~~~~----~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~ 388 (558)
||.+++. .++++| ++||+...+ +.+.+++++.|||+.++.+|++|++++||+++|++++|++++++|+|||+
T Consensus 211 RL~~~~~~~~~~~lGg~AvGT~~~~~~~~~~~v~~~~a~~LGl~~~~~~n~~~~~~~rD~~~e~~~~La~la~~L~kia~ 290 (458)
T TIGR00979 211 RIAYSLPHLYELAIGGTAVGTGLNTHPGFDEKVAEEIAKETGLPFVTAPNKFEALAAHDAIVEAHGALKTLAASLMKIAN 290 (458)
T ss_pred HHHHHHHHHHHhcCCCChhcCCccCChhHHHHHHHHHHHHhCCCCeecCcHHHHHcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987764 556666 688866544 46778999999999878999999999999999999999999999999999
Q ss_pred hhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHHH
Q psy10160 389 DIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSI 468 (558)
Q Consensus 389 d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (558)
||++|+||||+|||||.+|++++|||||||||||+.+|+++++|+++.|++.+++..+..++++.+.+.+.+.|.+++++
T Consensus 291 Dl~llss~~~~e~gev~~p~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 370 (458)
T TIGR00979 291 DIRWLGSGPRCGLGELFIPENEPGSSIMPGKVNPTQCEALTMVCVQVMGNDATIGFAGSQGNFELNVFKPVIIYNFLQSV 370 (458)
T ss_pred HHHHHhccccCCceeEECCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhHHHHHHHHHhccchhhhcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888999988888889999999
Q ss_pred HHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhh
Q psy10160 469 RLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEEEFNKW 548 (558)
Q Consensus 469 ~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~ 548 (558)
..+.+++..++..++++|+||+|||++|++.++.++|+||+.+||++||++++++.++|.+++|++.+...+++++++++
T Consensus 371 ~~~~~~~~~~~~~~l~~L~v~~erm~~nl~~~~~~~t~La~~lg~~~A~~~~~~a~~~~~~~~e~~~~~~~l~~~el~~~ 450 (458)
T TIGR00979 371 RLLSDAMESFRDHCVVGIEPNKERIQQLLNNSLMLVTALNPHIGYDNAAKIAKKAHKEGITLKEAALELGLLSEEEFDEW 450 (458)
T ss_pred HHHHHHHHHHHHHHHccCEECHHHHHHHHHcCccHHHHhhhccCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHH
Confidence 99999999999889999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred cCcccccC
Q psy10160 549 VVPEDMLG 556 (558)
Q Consensus 549 ~~p~~~~~ 556 (558)
+||++|+|
T Consensus 451 ldp~~~~~ 458 (458)
T TIGR00979 451 VVPEQMVG 458 (458)
T ss_pred cCHHHhcC
Confidence 99999986
|
Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs. |
| >COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-56 Score=413.22 Aligned_cols=290 Identities=38% Similarity=0.576 Sum_probs=272.7
Q ss_pred ccccchhhhhhhhh-hhhhhcccccchhhhhhhHHHhhcccccccccchHHHHHh---Hhhhhhhhc-----CCCCChhH
Q psy10160 267 GPHIKRAVEAEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDPNDRQALN---IVSIFYFTY-----LVKLSELL 337 (558)
Q Consensus 267 ~~w~~~~l~~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~~~~~~l~~---~~~~~~~~g-----~~g~~~~~ 337 (558)
+.-++..++....+ .++++.||||+|+|.|+|+|++|.+ |+..|.+|..||.. .+..+|++| ++++..+|
T Consensus 165 l~~L~~af~~Ka~EF~~ilKmGRTqLQDAvPmtlGqEF~A-fa~~l~ed~~ri~~~~~~l~evNlGgTAiGTGiNa~~~Y 243 (471)
T COG1027 165 LEDLIEAFERKAKEFADILKMGRTQLQDAVPMTLGQEFGA-FAVALKEDIKRIYRAAELLLEVNLGGTAIGTGINAPKGY 243 (471)
T ss_pred HHHHHHHHHHHHHHHhhhhhcChhhhcccccchhhhhHHH-HHHHHHHHHHHHHHHHHHHHhhcCCceeeccCcCCChhH
Confidence 33444444455555 8899999999999999999999998 99999999999974 456778887 36677788
Q ss_pred HHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCccccceecCCCCCCCCCCC
Q psy10160 338 ETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIMP 417 (558)
Q Consensus 338 ~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP 417 (558)
.+.+.+++++.+|++..+.+|.+|+++..|.+++++++|..+|..|+|||+|||||+||||++++|+.+|+.|.||||||
T Consensus 244 ~~~vv~~l~evtg~~~~~A~~Lieatq~~~afv~vsg~lk~~Av~LsKI~NDlRLLsSGPr~Gl~EI~LP~~Q~GSSIMP 323 (471)
T COG1027 244 IELVVKKLAEVTGLPLVPAENLIEATQDTGAFVMVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLPAVQAGSSIMP 323 (471)
T ss_pred HHHHHHHHHHHhCCCCccchhHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccCcccccCCCCCCCCCCCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHH
Q psy10160 418 GKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLL 497 (558)
Q Consensus 418 ~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~ 497 (558)
+|+||+++|.+.+.|.+|+|++.++.+++..+++|+|.++|.+.+.++.++.++..++..|.++|+++|++|+|+|++++
T Consensus 324 gKVNPVipEvvnQvcf~ViGnD~tit~AaeaGQLqLNvmePvI~~~l~~Si~iL~na~~~l~ekcI~gItaN~e~C~~~v 403 (471)
T COG1027 324 GKVNPVIPEVVNQVCFKVIGNDTTITMAAEAGQLQLNVMEPVIAYALFESISILTNACRNLREKCIDGITANEERCEEYV 403 (471)
T ss_pred CCcCchhHHHHHHHHHHHhcchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhhcCcccccCC
Q psy10160 498 HESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 498 ~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 557 (558)
..|+.++|.|.+++||+.+.+++|+|.++|++++|++.+.+.|++++|+++|+|+++..+
T Consensus 404 ~nSigivTaLnp~iGy~~~~~iaK~a~~tgksv~evvLe~g~Lteeel~~Il~~~~m~~p 463 (471)
T COG1027 404 ENSIGIVTALNPYIGYENAAIIAKEALETGKSVREVVLERGLLTEEELDDILSPENMTKP 463 (471)
T ss_pred HhhhHHHHhhcccccchHHHHHHHHHHHcCCcHHHHHHHhCCCCHHHHHHHhChhhcCCc
Confidence 999999999999999999999999999999999999999999999999999999998765
|
|
| >PRK13353 aspartate ammonia-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=457.53 Aligned_cols=313 Identities=38% Similarity=0.550 Sum_probs=277.3
Q ss_pred eeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhcccccccccch
Q psy10160 243 YCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDPN 314 (558)
Q Consensus 243 ~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~~~ 314 (558)
.+|+|.+.+|+..++.. ...+..+..+...+.. ...+ ++++|.||||+|+|+|+|+|||+++ |++.|.|+
T Consensus 134 ~vH~GrSrnD~v~Ta~~-L~~r~~l~~l~~~L~~l~~~L~~~A~~~~~~im~GrTH~Q~A~P~T~G~~~~~-~~~~l~r~ 211 (473)
T PRK13353 134 HVNMAQSTNDVFPTAIR-IAALNLLEGLLAAMGALQDVFEEKAAEFDHVIKMGRTQLQDAVPITLGQEFSA-YARALKRD 211 (473)
T ss_pred CccCCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccCccceeecHHHHHHH-HHHHHHHH
Confidence 48999999999988866 4444444443333332 2233 7899999999999999999999998 99999999
Q ss_pred HHHHHhHhhhh---hhhc-CCCCChhHH----HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHH
Q psy10160 315 DRQALNIVSIF---YFTY-LVKLSELLE----TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKI 386 (558)
Q Consensus 315 ~~~l~~~~~~~---~~~g-~~g~~~~~~----~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~ 386 (558)
++||.+++.++ ++|| ++||+...+ ..+.+++++.|||+.++.+|++|++++||+++|++++|++++++|+||
T Consensus 212 ~~rL~~~~~~~~~~pLGg~AvGT~~~~~~~~~~~~~~~la~~LG~~~~~~~n~~~a~~~rD~~~e~~~~la~la~~l~ri 291 (473)
T PRK13353 212 RKRIQQAREHLYEVNLGGTAVGTGLNADPEYIERVVKHLAAITGLPLVGAEDLVDATQNTDAFVEVSGALKVCAVNLSKI 291 (473)
T ss_pred HHHHHHHHHHHhhhCCCCccccCCccCChhHHHHHHHHHHHHhCCCCccccchHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99998776544 5555 677765443 367788999999997778899999999999999999999999999999
Q ss_pred hhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHH
Q psy10160 387 ANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLR 466 (558)
Q Consensus 387 a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (558)
|+||++|+||||+|||||.+|++++|||||||||||+.+|+++++|+++.|++.+++....+.+++.+...|.+...++.
T Consensus 292 A~Dl~llss~pr~e~gev~lp~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (473)
T PRK13353 292 ANDLRLLSSGPRTGLGEINLPAVQPGSSIMPGKVNPVMPEVVNQIAFQVIGNDVTITLAAEAGQLELNVMEPVIAFNLLE 371 (473)
T ss_pred HHHHHHHcCCCcCCceEEECCCCCCCCCCCCCCcCChHHHHHHHHHHHHHhHHHHHHHHHHcCChhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888888888777777888888
Q ss_pred HHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHh
Q psy10160 467 SIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEEEFN 546 (558)
Q Consensus 467 ~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~ 546 (558)
.+..+.+++..++..+|++|+||+|||+++++.+++++|+||+.|||+.+.++++.|.++|+++++++.+...+++++++
T Consensus 372 ~~~~~~~~~~~~~~~~l~gL~vn~erm~~~l~~~~~l~t~La~~Lgh~~v~~~~~~a~~~g~~l~e~~~~~~~~~~~el~ 451 (473)
T PRK13353 372 SISILTNACRAFTDNCVKGIEANEERCKEYVEKSVGIATALNPHIGYEAAARIAKEAIATGRSVRELALENGLLSEEELD 451 (473)
T ss_pred HHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhcCCCCHHHHH
Confidence 88888889999988899999999999999999999999999999999999999999999999999999988889999999
Q ss_pred hhcCcccccCC
Q psy10160 547 KWVVPEDMLGP 557 (558)
Q Consensus 547 ~~~~p~~~~~~ 557 (558)
+++||++|+++
T Consensus 452 ~~ldp~~~v~~ 462 (473)
T PRK13353 452 LILDPFRMTHP 462 (473)
T ss_pred HHcCHHHhcCC
Confidence 99999999975
|
|
| >PRK12273 aspA aspartate ammonia-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-56 Score=453.36 Aligned_cols=310 Identities=37% Similarity=0.552 Sum_probs=270.2
Q ss_pred cccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhcccccccccchHHH
Q psy10160 246 HHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDPNDRQ 317 (558)
Q Consensus 246 ~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~~~~~~ 317 (558)
+|.+.+|+..++.. ...+.....+...+.. ...+ .+++|.||||+|+|+|+|||||+++ |++.|.|+++|
T Consensus 139 ~GrSrnD~v~Ta~~-L~lr~~l~~l~~~L~~l~~~L~~~A~~~~dt~m~GrTH~Q~AqP~TfG~~~a~-~~~~l~r~~~R 216 (472)
T PRK12273 139 MSQSTNDAYPTAIR-IALLLSLRKLLDALEQLQEAFEAKAKEFADILKMGRTQLQDAVPMTLGQEFGA-YAVALAEDRKR 216 (472)
T ss_pred CCCCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEEeecccCccceeeeHHHHHHH-HHHHHHHHHHH
Confidence 88999999988876 4555554444443333 2223 7899999999999999999999998 99999999999
Q ss_pred HHhHhhhhhh---hc-CCCCChhHH----HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhhh
Q psy10160 318 ALNIVSIFYF---TY-LVKLSELLE----TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAND 389 (558)
Q Consensus 318 l~~~~~~~~~---~g-~~g~~~~~~----~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~d 389 (558)
|.+++.+++. || ++||+...+ +.+++++|+.|||+.++..|++|++++||+++|+++++++++++|+|||+|
T Consensus 217 L~~~~~~~~~~plGg~AvGT~~~i~~~~~~~v~~~~A~~LGf~~~~~~n~~da~~~rD~~~e~~~~la~la~~L~rlA~D 296 (472)
T PRK12273 217 LYRAAELLREVNLGATAIGTGLNAPPGYIELVVEKLAEITGLPLVPAEDLIEATQDTGAFVEVSGALKRLAVKLSKICND 296 (472)
T ss_pred HHHHHHHHhhcCCCccceeCCCCCChhHHHHHHHHHHHHcCCCcccCcCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987765554 45 677765433 467899999999997677899999999999999999999999999999999
Q ss_pred hhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHHHH
Q psy10160 390 IRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIR 469 (558)
Q Consensus 390 ~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (558)
|++|+|+||+|||||.+|++++|||||||||||+.+|+++++++++.|++.+++....+.+++.+...|.+...+++.+.
T Consensus 297 i~llss~e~~e~gev~lp~~~~GSSiMPqKrNP~~~E~ir~~a~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (472)
T PRK12273 297 LRLLSSGPRAGLNEINLPAVQAGSSIMPGKVNPVIPEVVNQVCFQVIGNDTTVTMAAEAGQLELNVMEPVIAYNLFESIS 376 (472)
T ss_pred HHHHhcCcccCceEEECCCCCCcCCCCCcccCcHHHHHHHHHHHHHhhhHHHHHHHHHcCCchhhhhhhhhHHHHHHHHH
Confidence 99999999999999999998999999999999999999999999999999999877777777766666666777777777
Q ss_pred HHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhhc
Q psy10160 470 LIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEEEFNKWV 549 (558)
Q Consensus 470 ~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~ 549 (558)
.+..++..+..+++++|+||++||+++++.+++++|+||+.|||+.||++++.|.++|+++.+++.+...++++++++++
T Consensus 377 ~~~~~l~~~~~~~l~~l~v~~erm~~~l~~~~~~~t~LA~~L~~~~a~~lv~~a~~~g~~l~~~~~~~~~l~~~el~~~l 456 (472)
T PRK12273 377 ILTNACRTLREKCIDGITANEERCREYVENSIGIVTALNPYIGYENAAEIAKEALETGKSVRELVLERGLLTEEELDDIL 456 (472)
T ss_pred HHHHHHHHHHHHHHccCEECHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhcCCCCHHHHHHHc
Confidence 77766655443699999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred CcccccCC
Q psy10160 550 VPEDMLGP 557 (558)
Q Consensus 550 ~p~~~~~~ 557 (558)
||++|+++
T Consensus 457 dp~~~v~~ 464 (472)
T PRK12273 457 SPENMTHP 464 (472)
T ss_pred CHHHhCCC
Confidence 99999976
|
|
| >cd01362 Fumarase_classII Class II fumarases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-55 Score=446.54 Aligned_cols=312 Identities=58% Similarity=0.809 Sum_probs=277.7
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcc-cccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhcccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYG-PHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNL 311 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~-~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l 311 (558)
+.++|+|.+.+|+..++.. ...+..+ ..+...+.. ...+ ++++|.||||+|+|+|+|||||+++ |++.|
T Consensus 127 ~~~vH~G~SrnDiv~Ta~~-L~lr~~l~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTh~Q~A~P~TfG~~~~~-~~~~l 204 (455)
T cd01362 127 NDHVNMSQSSNDTFPTAMH-IAAALALQERLLPALKHLIDALDAKADEFKDIVKIGRTHLQDATPLTLGQEFSG-YAAQL 204 (455)
T ss_pred cccccCCCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCCCCeeecHHHHHHH-HHHHH
Confidence 6789999999999999876 4444444 223222222 2223 7899999999999999999999998 99999
Q ss_pred cchHHHHHhHhhhh---hhhc-CCCCChhHH----HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHH
Q psy10160 312 DPNDRQALNIVSIF---YFTY-LVKLSELLE----TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSL 383 (558)
Q Consensus 312 ~~~~~~l~~~~~~~---~~~g-~~g~~~~~~----~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l 383 (558)
.|+++||.+++.++ +++| ++|+....+ +.+++++|+.|||+.+++.|++|++++||+++|+++++++++++|
T Consensus 205 ~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~~~~v~~~~a~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~l 284 (455)
T cd01362 205 EHAIARIEAALPRLYELALGGTAVGTGLNAHPGFAEKVAAELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSL 284 (455)
T ss_pred HHHHHHHHHHHHHhhhcCcCCeeccCCccCChhHHHHHHHHHHHHhCCCCccCCCHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99999999877544 5555 677765443 467789999999998788999999999999999999999999999
Q ss_pred HHHhhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHH
Q psy10160 384 MKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSN 463 (558)
Q Consensus 384 ~k~a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (558)
+|||+||++|+|+||+|||||.+|++++|||||||||||+.+|+++++++++.|.+..++..+..++++.+.+.+...|.
T Consensus 285 ~ria~Dl~~~~s~~~~e~gev~~~~~~~GSS~MPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (455)
T cd01362 285 MKIANDIRWLGSGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNDAAITIAGSSGNFELNVFKPVIIYN 364 (455)
T ss_pred HHHHHHHHHHccCccCCCceEECCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhHHHHHHHHhcCchhhhhcchHHHHH
Confidence 99999999999999999999999998999999999999999999999999999999999988888888888777767799
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHH
Q psy10160 464 VLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEE 543 (558)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~ 543 (558)
++++++.+.++++.++..++++|+||++||++++..++.++++||+.+||++||++++.+.++|.++++++.+...++++
T Consensus 365 ~l~~~~~~~~~~~~~~~~~l~~L~v~~~rm~~~l~~~~~~~~~La~~ig~~~A~~l~~~a~~~~~~l~~~~~~~~~~~~~ 444 (455)
T cd01362 365 LLQSIRLLADACRSFADKCVAGIEPNRERIAELLERSLMLVTALNPHIGYDKAAKIAKKAHKEGLTLKEAALELGYLTEE 444 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhcchhHHHhccccCHHHHHHHHHHHHHcCCCHHHHHHhcCCCCHH
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999988889999
Q ss_pred HHhhhcCcccc
Q psy10160 544 EFNKWVVPEDM 554 (558)
Q Consensus 544 ~~~~~~~p~~~ 554 (558)
++++++||.++
T Consensus 445 el~~~~dp~~~ 455 (455)
T cd01362 445 EFDRLVDPEKM 455 (455)
T ss_pred HHHHhcCcccC
Confidence 99999999864
|
This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle. |
| >PRK14515 aspartate ammonia-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-55 Score=442.36 Aligned_cols=312 Identities=32% Similarity=0.497 Sum_probs=272.5
Q ss_pred eecccceeEEEEeccCCCCCCCcccccchhhh-------hhhhh-hhhhhcccccchhhhhhhHHHhhcccccccccchH
Q psy10160 244 CQHHYYSQFCCESCTRAGQLPSYGPHIKRAVE-------AEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDPND 315 (558)
Q Consensus 244 ~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~-------~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~~~~ 315 (558)
++.+...+|+..++.. .........+...+. ....+ .+++|.||||+|+|+|+|+||++++ |++.|.|++
T Consensus 141 vn~grS~ND~v~Ta~~-L~~~~~l~~l~~~L~~L~~~L~~~A~~~~~~vm~GrTHlQ~A~PiT~G~~~~~-~a~~l~r~~ 218 (479)
T PRK14515 141 VNMAQSTNDAFPTAIH-IATLNALEGLLQTMGYMHDVFELKAEQFDHVIKMGRTHLQDAVPIRLGQEFKA-YSRVLERDM 218 (479)
T ss_pred CCCCCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhccccceeeeHHHHHHH-HHHHHHHHH
Confidence 3455556666666654 333333333332222 23333 7899999999999999999999998 999999999
Q ss_pred HHHHhHhhhhh---hh-cCCCCChhHH----HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHh
Q psy10160 316 RQALNIVSIFY---FT-YLVKLSELLE----TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIA 387 (558)
Q Consensus 316 ~~l~~~~~~~~---~~-g~~g~~~~~~----~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a 387 (558)
+||.+++.+++ +| |++||+...+ ..+..++++.+|+..+..+|++|++++||+++|++++|++++++|+|||
T Consensus 219 ~RL~~~~~~l~~~pLG~gAvGT~~~~~~~~~~~~l~~la~~~gl~~~~~~n~~da~~~rd~~~e~~~~l~~la~~L~kiA 298 (479)
T PRK14515 219 KRIQQSRQHLYEVNMGATAVGTGLNADPEYIEAVVKHLAAISELPLVGAEDLVDATQNTDAYTEVSAALKVCMMNMSKIA 298 (479)
T ss_pred HHHHHHHHHHhhccCCCccccCCCCCChhHHHHHHHHHHHHhCCCCCCCcchHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99998765554 45 4677766554 3677889999999888788999999999999999999999999999999
Q ss_pred hhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHH
Q psy10160 388 NDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRS 467 (558)
Q Consensus 388 ~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (558)
+||++|+|||+.||+|+.+|++++|||||||||||+.+|.+++.|++++|++.+++....+++++++...+.+...++.+
T Consensus 299 ~Dl~llsS~p~~g~~Ei~lp~~~~GSSiMP~KrNP~~~E~i~~~a~~v~G~~~~~~~~~~~~~le~n~~~p~i~~~l~~s 378 (479)
T PRK14515 299 NDLRLMASGPRVGLAEIMLPARQPGSSIMPGKVNPVMPEVINQIAFQVIGNDHTICLASEAGQLELNVMEPVLVFNLLQS 378 (479)
T ss_pred HHHHHHcCCCcCCeeEEeCCCCCCCcCCCCcccCchHHHHHHHHHHHHHhHHHHHHHHHhcccHHHHHhcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888888999999778778889999
Q ss_pred HHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhh
Q psy10160 468 IRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEEEFNK 547 (558)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~ 547 (558)
+..+..++..++++|+++|+||++||+++++.+++++|+||+.+||+.+++++++|.++|++++|++.+...++++|+++
T Consensus 379 i~~l~~al~~~~~~~l~gl~vn~erm~~~l~~s~~l~t~La~~iG~~~v~~~a~~A~~~g~~l~e~~~~~~~l~~~el~~ 458 (479)
T PRK14515 379 ISIMNNGFRAFTDNCLKGIEANEDRLKEYVEKSVGIITAVNPHIGYEAAARVAKEAIATGQSVRELCVKNGVLSQEDLEL 458 (479)
T ss_pred HHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCccHHHHhcchhcHHHHHHHHHHHHHhCCCHHHHHHhcCCCCHHHHHH
Confidence 99999999889989999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred hcCcccccCC
Q psy10160 548 WVVPEDMLGP 557 (558)
Q Consensus 548 ~~~p~~~~~~ 557 (558)
++||++++++
T Consensus 459 ~ldP~~~~~~ 468 (479)
T PRK14515 459 ILDPFEMTHP 468 (479)
T ss_pred hCCHHHcCCC
Confidence 9999999976
|
|
| >TIGR00839 aspA aspartate ammonia-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-55 Score=444.25 Aligned_cols=310 Identities=33% Similarity=0.481 Sum_probs=273.0
Q ss_pred cccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhcccccccccchHHH
Q psy10160 246 HHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDPNDRQ 317 (558)
Q Consensus 246 ~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~~~~~~ 317 (558)
.|.+.+|+..++.. ...+.....+...+.. ...+ ++++|.||||+|+|+|+|||||+++ |.+.|.|+++|
T Consensus 135 ~G~S~nD~v~Ta~~-L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~TfG~~~~~-~~~~l~r~~~R 212 (468)
T TIGR00839 135 KSQSTNDAYPTGFR-IAVYSSLIKLVDAINQLRDGFEQKAKEFADILKMGRTQLQDAVPMTLGQEFEA-FSILLEEEVKN 212 (468)
T ss_pred CCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCccCccchHHHHHHH-HHHHHHHHHHH
Confidence 48999999998876 4555554444433332 2233 7899999999999999999999998 99999999999
Q ss_pred HHhHhhhhh---hhc-CCCCChhHH----HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhhh
Q psy10160 318 ALNIVSIFY---FTY-LVKLSELLE----TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAND 389 (558)
Q Consensus 318 l~~~~~~~~---~~g-~~g~~~~~~----~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~d 389 (558)
|.+.+.+++ ++| ++||+...+ +.+++++|+.|||+.+..+|++|++++||+++|++++|++++++|+|||+|
T Consensus 213 L~~~~~~~~~~~lGg~AvGT~~~~~~~~~~~v~~~~a~~LGl~~~~~~n~~da~~~rd~~~e~~~~l~~la~~L~ria~D 292 (468)
T TIGR00839 213 IKRTAELLLEVNLGATAIGTGLNTPPEYSPLVVKKLAEVTGLPCVPAENLIEATSDCGAYVMVHGALKRLAVKMSKICND 292 (468)
T ss_pred HHHHHHHhhhcCCCCcceeCCCcCChhHHHHHHHHHHHHhCCCCCCCccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998776554 455 677765443 468999999999997767899999999999999999999999999999999
Q ss_pred hhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHHHH
Q psy10160 390 IRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIR 469 (558)
Q Consensus 390 ~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (558)
|++|+|+|++||||+.+|.+++|||||||||||+.+|+++++++++.|++..++....+..++.+...|.....+++.+.
T Consensus 293 l~l~~s~~~~~~~ev~~~~~~~gSS~MPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 372 (468)
T TIGR00839 293 LRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTLAAEAGQLQLNVMEPVIGQAMFESIH 372 (468)
T ss_pred HHHHhcCCcCCceEEeCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHHhHHHHHHHHHhcCChHhhhhhHHHHHHHHHHHH
Confidence 99999999999999999988999999999999999999999999999999999776677777766666666677888889
Q ss_pred HHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhhc
Q psy10160 470 LIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEEEFNKWV 549 (558)
Q Consensus 470 ~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~ 549 (558)
.+.+++..++..++++|+||+|||+++++.+..++++||+.+||+.||++++.+.++|+++.|++.+...++++++++++
T Consensus 373 ~~~~~~~~~~~~~l~~L~vn~erm~~~l~~~~~~~~~La~~~g~~~a~~~~~~a~~~g~~l~e~~~~~~~l~~~~l~~~l 452 (468)
T TIGR00839 373 ILTNACYNLTDKCVNGITANKEICEGYVFNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLEKGLLTEEELDDIF 452 (468)
T ss_pred HHHHHHHHHHHHHHccCEECHHHHHHHHHHhHHHHHHHhhHhhHHHHHHHHHHHHHhCCCHHHHHHhcCCCCHHHHHHHc
Confidence 99999988888999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred CcccccCC
Q psy10160 550 VPEDMLGP 557 (558)
Q Consensus 550 ~p~~~~~~ 557 (558)
||++|+++
T Consensus 453 dP~~~v~~ 460 (468)
T TIGR00839 453 SVENLMHP 460 (468)
T ss_pred CHHHHcCC
Confidence 99999986
|
Fumarate hydratase scores as high as 570 bits against this model. |
| >COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-55 Score=431.76 Aligned_cols=310 Identities=23% Similarity=0.217 Sum_probs=274.7
Q ss_pred EeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhh-------hh-hhhhhcccccchhhhhhhHHHhhccccccc
Q psy10160 239 VEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEA-------AA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVN 310 (558)
Q Consensus 239 ~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~-------~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~ 310 (558)
..++++|+|.|++|+.+++.+ .+.+.....+...+.... .. ++++|.||||+|+|.|+|+|++++. |..+
T Consensus 87 ~~~~~VH~GaTS~DI~Dta~~-L~lk~a~~ii~~~l~~l~~~L~~~A~~~k~t~m~GRTHgq~A~PtT~G~k~A~-w~~e 164 (438)
T COG0015 87 EASEYVHFGATSQDIIDTALA-LQLKEALDLILPDLKRLIEALAELALEHKDTPMLGRTHGQPAEPTTFGKKFAN-WLAE 164 (438)
T ss_pred ccccceecccchHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecccccCCCCccchHHHHHHH-HHHH
Confidence 457899999999999999988 677777766665554422 33 8899999999999999999999998 9999
Q ss_pred ccchHHHHHhH---hhhhhhhcCCCCChhHHH---HHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHH
Q psy10160 311 LDPNDRQALNI---VSIFYFTYLVKLSELLET---KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLM 384 (558)
Q Consensus 311 l~~~~~~l~~~---~~~~~~~g~~g~~~~~~~---~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~ 384 (558)
|.|+++||..+ +..++++|++||+++|++ .+++++++.|||.+.+.++ |+.+||+++|++++|++++++++
T Consensus 165 l~R~~~rL~~~~~~~~~g~i~Ga~Gt~Aa~~~~~~~ve~~v~e~LGL~~~p~st---q~~~RD~~ae~~~~La~i~~sl~ 241 (438)
T COG0015 165 LLRHLERLEEAEERIIVGKIGGAVGTLAALGDLGAEVEERVAEKLGLKPAPIST---QVSPRDRIAEFFSALALLAGSLE 241 (438)
T ss_pred HHHHHHHHHHHHhhhhhhccccchhhHhhcCchhHHHHHHHHHHcCCCCCCCCc---ccccchHHHHHHHHHHHHHHHHH
Confidence 99999999755 456888999999999997 8999999999999888876 79999999999999999999999
Q ss_pred HHhhhhhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHH
Q psy10160 385 KIANDIRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVS 462 (558)
Q Consensus 385 k~a~d~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (558)
|||.||++|+ ++|++|+.+|+ +|+|||+|||||||+.+|++.++++.+.+++..++... ..|+||+...|..+|
T Consensus 242 k~a~dIr~l~---~~e~~Ev~E~f~~gq~GSSaMPHKrNPi~~E~~~glar~~r~~~~~~~e~~-~~whERdlt~ssver 317 (438)
T COG0015 242 KFARDIRLLQ---RTEVGEVEEPFAKGQVGSSAMPHKRNPIDSENVTGLARVARALVSTLLENL-VLWHERDLTDSSVER 317 (438)
T ss_pred HHHHHHHHHH---hccccccccccCCCCCCCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHh-HHHHhccccchHHHH
Confidence 9999999999 69999999995 79999999999999999999999999999999887666 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhh------hhhccc-ccChHHHHHHHH----HHHHcCCCHH
Q psy10160 463 NVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLML------VTALNP-HIGYDKAAKIAK----TAHKEGTTLK 531 (558)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~------~~~la~-~l~~~~a~~~~~----~a~~~~~~~~ 531 (558)
..||+++.+.+.++..+..++++|.||+++|++|++..+.+ ..+|++ .+||++||++++ .+.++++++.
T Consensus 318 ~~Lp~~~~~~~~aL~~~~~vl~~L~v~~~~m~~nL~~~~gli~se~v~~~l~~~g~~Re~a~elvr~~a~~~~~~~~~~~ 397 (438)
T COG0015 318 VILPDAFIAADGALNRLLNVLEGLEVNPERMRRNLDLTLGLIASERVMLALRKKGMGREEAHELVREKAMKAWEQGKEFL 397 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHhhccchhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchH
Confidence 99999999999999999999999999999999999643321 135565 799999999875 4567889997
Q ss_pred HHHHHc----CCCCHHHHhhhcCcccccCC
Q psy10160 532 VAALKL----GYLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 532 ~~~~~~----~~l~~~~~~~~~~p~~~~~~ 557 (558)
+.+.+. ..+++++++++|||.+|+|.
T Consensus 398 ~~~l~~~~v~~~~~~~~~~~~~dp~~y~G~ 427 (438)
T COG0015 398 ELLLADERVTKYLSEEELLELLDPANYLGR 427 (438)
T ss_pred HHhccchhhhccCcHHHHHHcCCHHHHhhH
Confidence 776654 67999999999999999985
|
|
| >cd01357 Aspartase Aspartase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-54 Score=440.53 Aligned_cols=305 Identities=38% Similarity=0.561 Sum_probs=264.6
Q ss_pred eecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhcccccccccchH
Q psy10160 244 CQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDPND 315 (558)
Q Consensus 244 ~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~~~~ 315 (558)
+|+|.+.+|+..++.. ...+..+..+...+.. ...+ ++++|.||||+|+|+|+|||||+++ |++.|.|++
T Consensus 130 vH~GrSrnD~v~Ta~~-L~lr~~l~~l~~~L~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~P~TfG~~~~~-~~~~l~r~~ 207 (450)
T cd01357 130 VNMSQSTNDVYPTALR-LALILLLRKLLDALAALQEAFQAKAREFADVLKMGRTQLQDAVPMTLGQEFGA-YATALKRDR 207 (450)
T ss_pred ccCCCChHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeeccccCcccccchHHhHHHH-HHHHHHHHH
Confidence 7899999999988876 4555444444433332 2233 7899999999999999999999998 999999999
Q ss_pred HHHHhHhhhh---hhhc-CCCCChhH----HHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHh
Q psy10160 316 RQALNIVSIF---YFTY-LVKLSELL----ETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIA 387 (558)
Q Consensus 316 ~~l~~~~~~~---~~~g-~~g~~~~~----~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a 387 (558)
+||..++.++ +++| ++|++... ++.+++++|+.|||+.++..|++|++++||+++|++++|++++++|+|||
T Consensus 208 ~rL~~~~~~~~~~pLGg~AvGt~~~~~~~~~~~v~~~~a~~LGl~~~~~~n~~~a~~~rd~~~e~~~~l~~~a~~L~riA 287 (450)
T cd01357 208 ARIYKARERLREVNLGGTAIGTGINAPPGYIELVVEKLSEITGLPLKRAENLIDATQNTDAFVEVSGALKRLAVKLSKIA 287 (450)
T ss_pred HHHHHHHHHHHHhCCCCCceeCCCCCChhHHHHHHHHHHHHhCCCCccCcCHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 9998776544 5555 67776543 35688999999999976778999999999999999999999999999999
Q ss_pred hhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHH
Q psy10160 388 NDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRS 467 (558)
Q Consensus 388 ~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (558)
+||++|+|+||+|||||.+|++++|||||||||||+.+|+++++|+++.|++.+++....+.+++.+...|.....++..
T Consensus 288 ~Di~l~ss~e~~~~gev~~p~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (450)
T cd01357 288 NDLRLLSSGPRAGLGEINLPAVQPGSSIMPGKVNPVIPEVVNQVAFQVIGNDLTITMAAEAGQLELNVFEPVIAYNLLES 367 (450)
T ss_pred HHHHHHhcCCcCCceeEECCCCCCcCCCCCCCcCcHHHHHHHHHHHHHhhHHHHHHHHHhcCcchhhcchHHHHHHHHHH
Confidence 99999999999999999999889999999999999999999999999999999886666777777776666667777777
Q ss_pred HHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhh
Q psy10160 468 IRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEEEFNK 547 (558)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~ 547 (558)
+..+..++..+...++++|+||++||+++++.+++++|+||+.|||+.||++++.|.++|++++|++.+.+.|+++||++
T Consensus 368 ~~~~~~~l~~~~~~~l~~l~v~~erm~~~l~~~~~~~t~La~~lg~~~a~~~~~~a~~~g~~l~e~~~~~~~l~~~el~~ 447 (450)
T cd01357 368 IDILTNAVRTLRERCIDGITANEERCREYVENSIGIVTALNPYIGYEAAAEIAKEALETGRSVRELVLEEGLLTEEELDE 447 (450)
T ss_pred HHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhcCCCCHHHHHH
Confidence 77777766555457999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred hcC
Q psy10160 548 WVV 550 (558)
Q Consensus 548 ~~~ 550 (558)
++|
T Consensus 448 ~~~ 450 (450)
T cd01357 448 ILS 450 (450)
T ss_pred HhC
Confidence 986
|
This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. |
| >cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-53 Score=427.25 Aligned_cols=305 Identities=51% Similarity=0.697 Sum_probs=267.3
Q ss_pred eecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhcccccccccchH
Q psy10160 244 CQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDPND 315 (558)
Q Consensus 244 ~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~~~~ 315 (558)
+|+|.+.+++..++.. ...+.....+...+.. ...+ ++++|.||||+|+|+|+|||||+++ |++.|.|++
T Consensus 130 ~h~g~SrnD~v~t~~~-L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~T~G~~~~~-~~~~l~r~~ 207 (450)
T cd01596 130 NNSQSSNDDFPPAAHI-AAALALLERLLPALEQLQDALDAKAEEFADIVKIGRTHLQDAVPLTLGQEFSG-YAAQLARDI 207 (450)
T ss_pred CCCCCCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccccCCeeehHHHHHHH-HHHHHHHHH
Confidence 4577777777777654 3444444333333322 2223 7899999999999999999999998 999999999
Q ss_pred HHHHhHhhh---hhhhc-CCCCChhHH----HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHh
Q psy10160 316 RQALNIVSI---FYFTY-LVKLSELLE----TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIA 387 (558)
Q Consensus 316 ~~l~~~~~~---~~~~g-~~g~~~~~~----~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a 387 (558)
+||..++.+ ++++| ++|++...+ +.+++++|+.|||+.++.+|++||+++||+++++++++++++++|+|||
T Consensus 208 ~rL~~~~~~~~~~plGg~A~Gt~~~~~~~~~~~v~~~~a~~LGl~~~~~~n~~d~~~~rd~~~e~~~~la~~~~~l~ria 287 (450)
T cd01596 208 ARIEAALERLRELNLGGTAVGTGLNAPPGYAEKVAAELAELTGLPFVTAPNLFEATAAHDALVEVSGALKTLAVSLSKIA 287 (450)
T ss_pred HHHHHHHHHHHHhCCCCcceeCCCCCChhHHHHHHHHHHHHhCCCCccCcCHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 999877654 45555 677765433 4678999999999977889999999999999999999999999999999
Q ss_pred hhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHH
Q psy10160 388 NDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRS 467 (558)
Q Consensus 388 ~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (558)
+||++|+|+||+|||||.+|++++|||||||||||+.+|+++++++++.|.+..++...+..++|++...|...+.++++
T Consensus 288 ~Dl~~~ss~~~~e~gev~~~~~~~GSS~MPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 367 (450)
T cd01596 288 NDLRLLSSGPRAGLGEINLPANQPGSSIMPGKVNPVIPEAVNMVAAQVIGNDTAITMAGSAGQLELNVFKPVIAYNLLQS 367 (450)
T ss_pred HHHHHHcCCCcCCCeeEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhccHHHHHHHhhcCcccccchhhHHHHHHHHH
Confidence 99999999889999999999989999999999999999999999999999999998888999999977776656779999
Q ss_pred HHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhh
Q psy10160 468 IRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEEEFNK 547 (558)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~ 547 (558)
++.+.++++.++..++++|+||++||++++..++.++|+||+.|||+.||+++++|.++|+++.+++.+.+.|+++++++
T Consensus 368 ~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~t~LA~~lg~~~a~~~v~~a~~~g~~l~~~~~~~~~~~~~~l~~ 447 (450)
T cd01596 368 IRLLANACRSFRDKCVEGIEANEERCKEYVENSLMLVTALNPHIGYEKAAEIAKEALKEGRTLREAALELGLLTEEELDE 447 (450)
T ss_pred HHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcchHHHHhHHHhHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHH
Confidence 99999999999988999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred hcC
Q psy10160 548 WVV 550 (558)
Q Consensus 548 ~~~ 550 (558)
++|
T Consensus 448 ~~d 450 (450)
T cd01596 448 ILD 450 (450)
T ss_pred HhC
Confidence 886
|
This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle. |
| >PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=437.41 Aligned_cols=308 Identities=22% Similarity=0.208 Sum_probs=268.0
Q ss_pred eceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhcccccccc
Q psy10160 240 EGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNL 311 (558)
Q Consensus 240 ~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l 311 (558)
.+.++|+|.+++|+.+++.. ...+.....+...+.. ...+ ++++|.||||+|+|+|+||||++++ |++.|
T Consensus 98 ~~~~vH~G~SsnDi~~Ta~~-l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~GrTH~Q~A~P~T~G~~~~~-~~~~l 175 (452)
T PRK09053 98 AARYVHWGATSQDIIDTGLV-LQLRDALDLLEPDLDRLCDALATLAARHRATPMVGRTWLQQALPVTLGLKFAG-WLDAL 175 (452)
T ss_pred hhccccCCCChhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeehhccCCcceechHHHHHHH-HHHHH
Confidence 36789999999999998876 4455444444333332 2233 8899999999999999999999998 99999
Q ss_pred cchHHHHHhHh---hhhhhhcCCCCChhHH---HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHH
Q psy10160 312 DPNDRQALNIV---SIFYFTYLVKLSELLE---TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMK 385 (558)
Q Consensus 312 ~~~~~~l~~~~---~~~~~~g~~g~~~~~~---~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k 385 (558)
.|+++||.+++ ..++++|++|++++++ +.+++++|+.|||+.+...| +++||+++|++++|+.++++|+|
T Consensus 176 ~r~~~RL~~~~~~~~~~~lGgavGt~~~~~~~~~~v~~~~a~~LGl~~~~~~~----~~~rD~~~e~~~~la~la~~L~k 251 (452)
T PRK09053 176 LRHRQRLAALRPRALVLQFGGAAGTLASLGEQALPVAQALAAELQLALPALPW----HTQRDRIAEFASALGLLAGTLGK 251 (452)
T ss_pred HHHHHHHHHHHhhhhhccccchhhcccccccchHHHHHHHHHHcCCCCCCCCc----ccccHHHHHHHHHHHHHHHHHHH
Confidence 99999998776 5566788899977543 56789999999999766665 79999999999999999999999
Q ss_pred HhhhhhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHH
Q psy10160 386 IANDIRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSN 463 (558)
Q Consensus 386 ~a~d~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (558)
||+||++|+ ++||||+.+|+ +++|||||||||||+.+|+++++|+++.|++..++ ....+++|++.+.|..+|.
T Consensus 252 ia~Di~ll~---~~e~gev~e~~~~~~~GSSiMP~KrNPv~~E~i~~~a~~v~g~~~~~~-~~~~~~~erd~~~~~~~~~ 327 (452)
T PRK09053 252 IARDVSLLM---QTEVGEVFEPAAAGKGGSSTMPHKRNPVGCAAVLTAATRAPGLVATLF-AAMPQEHERALGGWHAEWD 327 (452)
T ss_pred HHHHHHHHh---ccccchhhccccCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHHHH-HhChhhhcccCCccHHHHH
Confidence 999999999 59999998886 47999999999999999999999999999999884 6667899999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhh------hhcccccChHHHHHH----HHHHHHcCCCHHHH
Q psy10160 464 VLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLV------TALNPHIGYDKAAKI----AKTAHKEGTTLKVA 533 (558)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~------~~la~~l~~~~a~~~----~~~a~~~~~~~~~~ 533 (558)
.++++..+...++..+..++++|+||++||+++++.+.+++ +.|++.+||++||++ ++.+.++|++++++
T Consensus 328 ~l~~~~~~~~~al~~~~~~l~~l~v~~erm~~~l~~s~~~~~ae~~~~~La~~lgr~~Ah~iV~~~~~~a~~~g~~~~~~ 407 (452)
T PRK09053 328 TLPELACLAAGALAQMAQIVEGLEVDAARMRANLDLTHGLILAEAVMLALADRIGRLDAHHLVEQASKRAVAEGRHLRDV 407 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhcCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999998766444 899999999999998 56678899999999
Q ss_pred HHHc----CCCCHHHHhhhcCcccccCC
Q psy10160 534 ALKL----GYLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 534 ~~~~----~~l~~~~~~~~~~p~~~~~~ 557 (558)
+.+. ..|+++++++++||.+|+|.
T Consensus 408 ~~~~~~~~~~l~~~~l~~~l~P~~~~g~ 435 (452)
T PRK09053 408 LAEDPQVSAHLSPAALDRLLDPAHYLGQ 435 (452)
T ss_pred HHhChhhhccCCHHHHHHHcCHHHHhcc
Confidence 9875 66899999999999999985
|
|
| >PRK08470 adenylosuccinate lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-53 Score=427.95 Aligned_cols=308 Identities=18% Similarity=0.122 Sum_probs=266.0
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhhhh-------hhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAE-------AAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~-------~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|+|.+++|+.+++.. ...+.....+...+... ... ++++|.||||+|+|+|+||||++++ |++.|.
T Consensus 85 ~~~vH~G~TsnDi~dTa~~-L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~TfG~~~a~-~~~~l~ 162 (442)
T PRK08470 85 SRFVHYGMTSSDCIDTAVA-LQMRDSLKLIIEDVKNLMEAIKKRALEHKDTLMVGRSHGIHGEPITFGLVLAI-WYDEIK 162 (442)
T ss_pred ccceecCCChhchHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecccCCCcCeehhHHHHHHH-HHHHHH
Confidence 6889999999999999877 55555554444444332 223 7899999999999999999999998 999999
Q ss_pred chHHHHHhHh---hhhhhhcCCCCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhhh
Q psy10160 313 PNDRQALNIV---SIFYFTYLVKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAND 389 (558)
Q Consensus 313 ~~~~~l~~~~---~~~~~~g~~g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~d 389 (558)
|+++||.+++ ..++++|++|++++++..+++++++.|||+.++++| ++++||+++|++++|++++++|+|||+|
T Consensus 163 r~~~RL~~~~~~~~~~~lgGAvGt~a~~~~~v~~~~a~~LGl~~~~~~~---~v~~RD~~~e~~~~La~~a~~L~ria~D 239 (442)
T PRK08470 163 RHLKALEHTMEVISVGKISGAMGNFAHAPLELEELVCEELGLKPAPVSN---QVIQRDRYARLASALALLASSCEKIAVA 239 (442)
T ss_pred HHHHHHHHHHHHhhhhcCcchhcccccCChHHHHHHHHHcCCCCCCCCC---CccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999776 455667899999999877899999999999778888 5799999999999999999999999999
Q ss_pred hhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHH
Q psy10160 390 IRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRS 467 (558)
Q Consensus 390 ~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (558)
|++|++ +||+|+.++. +++|||||||||||+.+|+++++++.+.|.+..++ .....+++++...|..+|..+|+
T Consensus 240 i~~l~~---~E~~ev~e~~~~g~~GSS~MPhKrNPv~~E~i~~~a~~~~~~~~~~~-~~~~~~~eRD~~~~~~e~~~l~~ 315 (442)
T PRK08470 240 IRHLQR---TEVYEAEEYFSKGQKGSSAMPHKRNPVLSENITGLCRVIRSFATPAL-ENVALWHERDISHSSVERFILPD 315 (442)
T ss_pred HHHHhc---cccceecccCCCCCCCcCCCCCCcCcHHHHHHHHHHHHHHHHHHHHH-HhchHhhccCCchhHHHhhhHHH
Confidence 999995 9999999884 68999999999999999999999999999986665 44467799999888899999999
Q ss_pred HHHHHHHHHHHHHhhhcCcccCHHHHHHHHhh--hHhhhhhc----cc-ccChHHHHHHHH----HHHHc---CCC----
Q psy10160 468 IRLIADSATAFTDKCVSGIVANEENIHRLLHE--SLMLVTAL----NP-HIGYDKAAKIAK----TAHKE---GTT---- 529 (558)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~--~~~~~~~l----a~-~l~~~~a~~~~~----~a~~~---~~~---- 529 (558)
+..+...++..+..++++|+||++||++|++. ++++++++ ++ .+||++||++|+ ++.++ |++
T Consensus 316 ~~~~~~~~l~~~~~~l~~l~v~~~rm~~nl~~~~g~~~ae~l~~~L~~~G~~~~~Ah~~V~~~~~~a~~~~~~~~~~~~~ 395 (442)
T PRK08470 316 AFITTDFMLHRLNNVIENLVVYPENMMKNLNLTGGLVFSQRVLLELPKKGVSREDAYKIVQRNAMKVWEDLQQGKAAINE 395 (442)
T ss_pred HHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 99999999999999999999999999999965 56666554 44 478999999764 45566 888
Q ss_pred -----HHHHHHHc----CCCCHHHHhhhcCcccccCC
Q psy10160 530 -----LKVAALKL----GYLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 530 -----~~~~~~~~----~~l~~~~~~~~~~p~~~~~~ 557 (558)
|.|.+.+. ..+++++|+.+|||++|+|.
T Consensus 396 ~~~~~l~~~l~~~~~~~~~~~~~~l~~~~dp~~~~g~ 432 (442)
T PRK08470 396 KGESLFLQALLNDEDLRKSLSEEEIRACFDYSYYTKN 432 (442)
T ss_pred ccHHHHHHHHhcCHHhHhcCCHHHHHHHhCHHHHHhh
Confidence 99988764 56899999999999999984
|
|
| >PRK07492 adenylosuccinate lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-53 Score=425.87 Aligned_cols=308 Identities=16% Similarity=0.139 Sum_probs=266.1
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhhhhh-------hh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEA-------AA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~-------~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|+|.+++|+.+++.. ...+.....+...+.... .. ++++|.||||+|+|+|+||||++++ |++.|.
T Consensus 88 ~~~vH~G~Ts~Di~dTa~~-L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~TfG~~~a~-~~~~l~ 165 (435)
T PRK07492 88 ARFVHQGMTSSDVLDTCLN-VQLVRAADLLLADLDRVLAALKKRAFEHKDTPTIGRSHGIHAEPTTFGLKLAR-FYAEFA 165 (435)
T ss_pred hhhhcCCCChhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEeeccCCccceehhHHHHHHH-HHHHHH
Confidence 7899999999999999877 555555555554444322 23 7899999999999999999999998 999999
Q ss_pred chHHHHHhHh---hhhhhhcCCCCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhhh
Q psy10160 313 PNDRQALNIV---SIFYFTYLVKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAND 389 (558)
Q Consensus 313 ~~~~~l~~~~---~~~~~~g~~g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~d 389 (558)
|+++||+++. .+++++|++||++.+++.+++++++.|||+.++..| ++++||+++|++++|++++++|+|||+|
T Consensus 166 r~~~rL~~~~~~~~~~~lgGAvGT~~~~~~~~~~~~a~~LGl~~~~~~~---~v~~RD~~~e~~~~la~~~~~L~ria~D 242 (435)
T PRK07492 166 RNRERLVAAREEIATCAISGAVGTFANIDPRVEEHVAKKLGLKPEPVST---QVIPRDRHAMFFATLGVIASSIERLAIE 242 (435)
T ss_pred HHHHHHHHHHHhhhhccCcccccCCccCChHHHHHHHHHhCCCCCCccc---cccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998775 566778899999988888889999999999765554 4699999999999999999999999999
Q ss_pred hhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHH
Q psy10160 390 IRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRS 467 (558)
Q Consensus 390 ~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (558)
|++|+ ++||+|+.++. +++|||||||||||+.+|+++++++.+.|.+..++ .....+++++...|..+|.++|+
T Consensus 243 i~~l~---~~e~~El~e~~~~g~~GSS~MPhKrNP~~~E~i~~~a~~~~~~~~~~~-~~~~~~~eRD~~~~~~e~~~lp~ 318 (435)
T PRK07492 243 IRHLQ---RTEVLEAEEFFSPGQKGSSAMPHKRNPVLTENLTGLARLVRSYVVPAM-ENVALWHERDISHSSVERMIGPD 318 (435)
T ss_pred HHHHh---ccccchhccccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-HhcchhhccCChHHHHhhhHHHH
Confidence 99999 59999999874 68999999999999999999999999999976664 44467789999889999999999
Q ss_pred HHHHHHHHHHHHHhhhcCcccCHHHHHHHHhh--hHhhhhhc----cc-ccChHHHHHHHH----HHHHcCCCHHHHHHH
Q psy10160 468 IRLIADSATAFTDKCVSGIVANEENIHRLLHE--SLMLVTAL----NP-HIGYDKAAKIAK----TAHKEGTTLKVAALK 536 (558)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~--~~~~~~~l----a~-~l~~~~a~~~~~----~a~~~~~~~~~~~~~ 536 (558)
+..+...++..+..++++|+||++||++|++. ++++++.+ ++ .+||++||++|+ ++.++|++|.|.+.+
T Consensus 319 ~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl~~~~g~i~ae~~~~~L~~~g~~r~~Ah~~V~~~~~~a~~~~~~l~e~l~~ 398 (435)
T PRK07492 319 ATITLDFALNRLAGVIEKLVVYPENMLKNLNKFGGLVHSQRVLLALTQAGVSREDAYRLVQRNAMKVWEQGGDFLEELKA 398 (435)
T ss_pred HHHHHHHHHHHHHHHHccCEECHHHHHHHHhhcCChhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHHHhC
Confidence 99999999999999999999999999999984 55555444 45 489999998654 566789999999886
Q ss_pred c----CCCCHHHHhhhcCcccccCC
Q psy10160 537 L----GYLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 537 ~----~~l~~~~~~~~~~p~~~~~~ 557 (558)
+ ..|+++||++++||++|+|.
T Consensus 399 ~~~~~~~l~~~el~~~~dp~~ylg~ 423 (435)
T PRK07492 399 DPEVRAALSEEEIEELFDLGYHTKH 423 (435)
T ss_pred CHHhHhcCCHHHHHHHhCHHHHhcc
Confidence 4 57899999999999999985
|
|
| >PRK07380 adenylosuccinate lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=422.88 Aligned_cols=309 Identities=18% Similarity=0.150 Sum_probs=266.2
Q ss_pred eceeeecccceeEEEEeccCCCCCCCcccccchhhhhh-------hhh-hhhhhcccccchhhhhhhHHHhhcccccccc
Q psy10160 240 EGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAE-------AAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNL 311 (558)
Q Consensus 240 ~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~-------~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l 311 (558)
.+.++|+|.+++|+.+++.. ...+.....+...+... ..+ ++++|.||||+|+|+|+||||++++ |++.|
T Consensus 84 ~~~~vH~G~Ts~Di~dTa~~-L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~TfG~~~a~-~~~~l 161 (431)
T PRK07380 84 AGRYIHLGMTSSDVLDTGLA-LQLVASLDLLLEELEDLIQAIRYQAREHRNTVMIGRSHGIHAEPITFGFKLAG-WLAET 161 (431)
T ss_pred hhccccCCCChhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeechhcCccceechHHHHHHH-HHHHH
Confidence 37899999999999999877 55555555544444432 223 7899999999999999999999998 99999
Q ss_pred cchHHHHHhHhh---hhhhhcCCCCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhh
Q psy10160 312 DPNDRQALNIVS---IFYFTYLVKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAN 388 (558)
Q Consensus 312 ~~~~~~l~~~~~---~~~~~g~~g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~ 388 (558)
.|+++||.+++. .++++|++||++.+++.+++++++.|||+.+..+| ++.+||+++|++++|++++++|+|||+
T Consensus 162 ~r~~~RL~~~~~~~~~~~l~GAvGt~~~~~~~~~~~~a~~LGl~~~~~~~---~v~~rd~~~e~~~~la~~a~~L~kia~ 238 (431)
T PRK07380 162 LRNRERLVRLREDIAVGQISGAVGTYANTDPRVEAITCQKLGLKPDTAST---QVISRDRHAEYVQTLALVGASLERFAT 238 (431)
T ss_pred HHHHHHHHHHHHHHhccCcchhhcCcccCChhHHHHHHHHcCCCCCCCCC---CccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997764 45667889999988888888999999999766554 579999999999999999999999999
Q ss_pred hhhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHH
Q psy10160 389 DIRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLR 466 (558)
Q Consensus 389 d~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (558)
||++|+ +.||+|+.++. +++|||||||||||+.+|+++++|+.+.|.+..++ .....++|++...|..+|..++
T Consensus 239 Di~~l~---~~~~~el~e~~~~g~~GSS~MPhKrNP~~~E~i~~~a~~~~g~~~~~~-~~~~~~~eRD~~~~~~e~~~l~ 314 (431)
T PRK07380 239 EIRNLQ---RTDVLEVEEYFAKGQKGSSAMPHKRNPIRSERLSGLARVLRSYAVAAL-ENVALWHERDISHSSVERVMLP 314 (431)
T ss_pred HHHHhc---ccCceeecccCCCCCCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HhchhhhccCchHHHHHHHHHH
Confidence 999999 59999998774 68999999999999999999999999999998764 4445778999988889999999
Q ss_pred HHHHHHHHHHHHHHhhhcCcccCHHHHHHHHh--hhHhhhhhc----cc-ccChHHHHHHH----HHHHH-cCCCHHHHH
Q psy10160 467 SIRLIADSATAFTDKCVSGIVANEENIHRLLH--ESLMLVTAL----NP-HIGYDKAAKIA----KTAHK-EGTTLKVAA 534 (558)
Q Consensus 467 ~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~--~~~~~~~~l----a~-~l~~~~a~~~~----~~a~~-~~~~~~~~~ 534 (558)
++..+...++..+..++++|+||++||++|++ .++++++++ ++ .+||++||++| ++|.+ +|.+|.|++
T Consensus 315 ~~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl~~~~g~~~ae~~~~~Lv~~gl~r~~Ah~~V~~~~~~a~~~~~~~l~e~l 394 (431)
T PRK07380 315 DCSILLHFMLREMTDLVKNLLVYPENMRRNMNIYGGVVFSQRVLLALVEKGMSREEAYRLVQKNAHTAWNTEGGNFRANL 394 (431)
T ss_pred HHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999996 566555554 45 48999999865 46677 899999999
Q ss_pred HHc----CCCCHHHHhhhcCcccccCC
Q psy10160 535 LKL----GYLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 535 ~~~----~~l~~~~~~~~~~p~~~~~~ 557 (558)
.++ ..|+++||++++||++|+|.
T Consensus 395 ~~~~~~~~~l~~~~l~~~~dp~~ylg~ 421 (431)
T PRK07380 395 EADPEVTQLLSAAELADCFDPQLHLKN 421 (431)
T ss_pred HcChHhhhcCCHHHHHHhhCHHHHhcc
Confidence 975 46899999999999999985
|
|
| >cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-52 Score=420.84 Aligned_cols=309 Identities=18% Similarity=0.116 Sum_probs=264.7
Q ss_pred eceeeecccceeEEEEeccCCCCCCCcccccchhhhhh-------hhh-hhhhhcccccchhhhhhhHHHhhcccccccc
Q psy10160 240 EGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAE-------AAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNL 311 (558)
Q Consensus 240 ~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~-------~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l 311 (558)
.+.++|+|.|++++.+++.. ...+.....+...+... ..+ ++++|.||||+|+|+|+||||++++ |++.|
T Consensus 86 ~~~~vH~G~TS~Di~dta~~-L~lr~a~~~l~~~L~~l~~~L~~~A~~~~dt~m~GrTH~Q~A~P~TfG~~~a~-~~~~L 163 (436)
T cd03302 86 AAGIIHLGATSCFVTDNTDL-IQIRDALDLILPKLAAVIDRLAEFALEYKDLPTLGFTHYQPAQLTTVGKRACL-WIQDL 163 (436)
T ss_pred ccCeeeeCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeccccCCccccchHHHHHHH-HHHHH
Confidence 36899999999999998877 56666655554444432 223 7899999999999999999999998 99999
Q ss_pred cchHHHHHhHhhhhhh---hcCCCCChhHH----------HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHH
Q psy10160 312 DPNDRQALNIVSIFYF---TYLVKLSELLE----------TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNT 378 (558)
Q Consensus 312 ~~~~~~l~~~~~~~~~---~g~~g~~~~~~----------~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~ 378 (558)
.|+++||.+++.+++. +|++|++++++ +.+++++++.|||..+ . +..+++++||+++|++++|++
T Consensus 164 ~r~~~RL~~~~~~~~~~~~~GavGt~a~~~~~~~~dr~~~~~v~~~~a~~LGl~~~-~-~~~~~v~~rD~~~e~~~~la~ 241 (436)
T cd03302 164 LMDLRNLERLRDDLRFRGVKGTTGTQASFLDLFEGDHDKVEALDELVTKKAGFKKV-Y-PVTGQTYSRKVDIDVLNALSS 241 (436)
T ss_pred HHHHHHHHHHHHHHHhhcCcChhhhhHHHHhcCCchHHHHHHHHHHHHHHcCCCCC-C-CchhhhhccHHHHHHHHHHHH
Confidence 9999999988766654 67899988773 3456899999999954 2 333478999999999999999
Q ss_pred HHHHHHHHhhhhhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccc
Q psy10160 379 VAVSLMKIANDIRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVF 456 (558)
Q Consensus 379 ~~~~l~k~a~d~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (558)
++++|+|||+||++|+| +||+.+|. +++|||||||||||+.+|+++++|+.+.|++..++...+.+++|+|..
T Consensus 242 ~a~~L~riA~Dl~l~~s-----~~el~e~~~~g~~GSS~MPhKrNPv~~E~i~~~a~~~~g~~~~~~~~~~~~~~Erd~~ 316 (436)
T cd03302 242 LGATAHKIATDIRLLAN-----LKEVEEPFEKGQIGSSAMPYKRNPMRSERCCSLARHLMNLASNAAQTASTQWFERTLD 316 (436)
T ss_pred HHHHHHHHHHHHHHHhh-----CceecccccCCCCCcccCCCccCcHHHHHHHHHHHHHHhhHHHHHHHhhccccccCCc
Confidence 99999999999999995 89999994 589999999999999999999999999999999987888899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhh--Hhhh----hhccc-ccChHHHHHHHH----HHHH
Q psy10160 457 KPLIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHES--LMLV----TALNP-HIGYDKAAKIAK----TAHK 525 (558)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~--~~~~----~~la~-~l~~~~a~~~~~----~a~~ 525 (558)
.|..+|..++++..+..+++.++..++++|+||++||++|++.+ ++++ ..|++ .+||++||++|+ ++.+
T Consensus 317 ~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~g~~~se~~~~~L~~~g~~~~~Ah~~v~~~~~~~~~ 396 (436)
T cd03302 317 DSANRRIAIPEAFLAADAILITLQNISEGLVVYPKVIERHIRQELPFMATENIIMAAVKAGGDRQDAHERIRVLSHQAAA 396 (436)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999875 4443 34555 489999998765 5556
Q ss_pred c------CCCHHHHHHHcCC--CCHHHHhhhcCcccccCC
Q psy10160 526 E------GTTLKVAALKLGY--LTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 526 ~------~~~~~~~~~~~~~--l~~~~~~~~~~p~~~~~~ 557 (558)
+ |.+|+|++.++.. -++++|++++||+.|+|.
T Consensus 397 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~dp~~~~g~ 436 (436)
T cd03302 397 VVKQEGGDNDLIERIKNDAYFKPIWDELDALLDPKTFIGR 436 (436)
T ss_pred HhhcccCCCCHHHHHhcCCCcCCCHHHHHHHhCHHhhhCc
Confidence 7 9999999997631 188899999999999984
|
This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting. |
| >cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=420.72 Aligned_cols=307 Identities=24% Similarity=0.265 Sum_probs=260.9
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|.|.+.+|+..++.. ...+.....+...+.. ...+ .+++|.||||+|+|+|+|+|||+++ |+..|.
T Consensus 90 g~~lH~grSrnD~~~Ta~~-l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~~~m~grTH~Q~A~P~T~G~~~~~-~~~~l~ 167 (437)
T cd01597 90 GEYVHWGATTQDIIDTALV-LQLRDALDLLERDLDALLDALARLAATHRDTPMVGRTHLQHALPITFGLKVAV-WLSELL 167 (437)
T ss_pred cCeeecCccHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeehhhcCccceechHHHHHHH-HHHHHH
Confidence 5788999999999888866 4444444333333322 2233 7899999999999999999999998 999999
Q ss_pred chHHHHHhHhh---hhhhhcCCCCChhHH---HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHH
Q psy10160 313 PNDRQALNIVS---IFYFTYLVKLSELLE---TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKI 386 (558)
Q Consensus 313 ~~~~~l~~~~~---~~~~~g~~g~~~~~~---~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~ 386 (558)
|+++||.+++. .+.+||++|++++++ +.+++++|+.|||+.+... ++++||+++|++++++.++++|+||
T Consensus 168 r~~~rL~~~~~~~~~~~lGga~Gtg~~~~~~~~~~~~~~a~~LGf~~~~~~----~~~~rd~~~e~~~~l~~~a~~l~rl 243 (437)
T cd01597 168 RHRERLDELRPRVLVVQFGGAAGTLASLGDQGLAVQEALAAELGLGVPAIP----WHTARDRIAELASFLALLTGTLGKI 243 (437)
T ss_pred HHHHHHHHHHHhhhhhccccccccccccCCcHHHHHHHHHHHcCCCCCCCc----cccCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999998775 455677888888775 4689999999999976543 5899999999999999999999999
Q ss_pred hhhhhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHH
Q psy10160 387 ANDIRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNV 464 (558)
Q Consensus 387 a~d~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (558)
|+||++|++ +||||+.+|+ .++|||||||||||+.+|+++++++++.|+.+.++. ...+++++|.+.|...|..
T Consensus 244 a~Dl~l~s~---~e~gel~~~~~~~~~GSSiMPqK~NP~~~E~i~~~a~~~~g~~~~~~~-~~~~~~erd~~~~~~~~~~ 319 (437)
T cd01597 244 ARDVYLLMQ---TEIGEVAEPFAKGRGGSSTMPHKRNPVGCELIVALARRVPGLAALLLD-AMVQEHERDAGAWHAEWIA 319 (437)
T ss_pred HHHHHHHhc---cccceeecccCCCCCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHH-hchhhcccCCchhHHHHHH
Confidence 999999995 8999999997 699999999999999999999999999999877654 4457899999888888999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhh------hhcccccChHHHHHH----HHHHHHcCCCHHHHH
Q psy10160 465 LRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLV------TALNPHIGYDKAAKI----AKTAHKEGTTLKVAA 534 (558)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~------~~la~~l~~~~a~~~----~~~a~~~~~~~~~~~ 534 (558)
++++..+...++.++..++++|+||++||++++..++++. ..|++.+||++||++ ++.+.++|.++.+++
T Consensus 320 l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~~~~~ae~l~~~l~~~i~~~~Ah~~v~~~~~~a~~~g~~~~~~~ 399 (437)
T cd01597 320 LPEIFLLASGALEQAEFLLSGLEVNEDRMRANLDLTGGLILSEAVMMALAPKLGRQEAHDLVYEACMRAVEEGRPLREVL 399 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9888888888888999999999999999999997655432 366677999999987 566778999999998
Q ss_pred HHc----CCCCHHHHhhhcCcccccCC
Q psy10160 535 LKL----GYLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 535 ~~~----~~l~~~~~~~~~~p~~~~~~ 557 (558)
.+. ..++++++++++||++|+|+
T Consensus 400 ~~~~~~~~~l~~~~l~~~ldp~~~v~~ 426 (437)
T cd01597 400 LEDPEVAAYLSDEELDALLDPANYLGS 426 (437)
T ss_pred HhChhhhccCCHHHHHHhcCHHHHhcc
Confidence 875 56889999999999999975
|
This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms. |
| >COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-51 Score=400.97 Aligned_cols=267 Identities=21% Similarity=0.270 Sum_probs=236.4
Q ss_pred hhhhhcccccchhhhhhhHHHhhcccccccccchHHHHHhHhhhhhhhc-CCCCChhHH-HHHHHHHHhHhCCCcccCCC
Q psy10160 281 ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDPNDRQALNIVSIFYFTY-LVKLSELLE-TKCAAKIAELTGLPFKSAPN 358 (558)
Q Consensus 281 ~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~g-~~g~~~~~~-~~~~~~~a~~lg~~~~~~~~ 358 (558)
.+++|+|+||+|.|||+|+|||+.+ |++.|.||++|+.+++.+++.+| +.|+++|.+ +++|+++|+.|||+ .+..|
T Consensus 148 ~~~imPGyTHlQ~AQPvtf~H~lla-y~~~l~RD~~Rl~d~~~rvn~sPLGagAlaGt~~~iDR~~tA~lLGF~-~~~~N 225 (459)
T COG0165 148 AETVMPGYTHLQRAQPVTFAHHLLA-YAEMLARDIERLRDALKRVNVSPLGAGALAGTPFPIDRERTAELLGFD-AVTRN 225 (459)
T ss_pred cCCccCCcccccccCcCcHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCHHHHHHHcCCc-hhhcC
Confidence 7899999999999999999999998 99999999999999999999995 344444444 58999999999999 78999
Q ss_pred hhHHhhcCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCccccceecCCC-CCCCCCCCCCCCchHHHHHHHHHHHHHc
Q psy10160 359 KFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPEN-EPGSSIMPGKVNPTQCEALTMVAAQVMG 437 (558)
Q Consensus 359 ~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~d~~~~~s~~~~e~~e~~~~~~-~~gSS~MP~K~NP~~~e~~~~~~~~~~~ 437 (558)
++|++++||+++|+++++++++.+|+|||+||.+|+| .|||+|.+|+. .+|||||||||||+.+|++|+.+++++|
T Consensus 226 sldavs~Rdf~le~l~~~s~~~~~LSRlaedlI~wss---~EfgfI~l~D~~sTGSSIMPQKKNPD~~ELiRgk~grv~G 302 (459)
T COG0165 226 SLDAVSDRDFILEFLSAAALIMVHLSRLAEDLILWSS---PEFGFIELPDEFSTGSSIMPQKKNPDVLELIRGKAGRVIG 302 (459)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---ccCceEeCCcccccccccCCCCCCCcHHHHHHHhhhhhHH
Confidence 9999999999999999999999999999999999998 89999999986 8999999999999999999999999999
Q ss_pred ccHHHHhhccccccccccchhhH--HHHHHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccc-----
Q psy10160 438 NHVAVTIGGSNGHFELNVFKPLI--VSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPH----- 510 (558)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~----- 510 (558)
++.+++..+++ ++..|+++++ +..+|+++..+..++..+. .++++|+||+|+|++.+.+++++||+||++
T Consensus 303 ~l~~ll~~~k~--lPlaYnrDlQedke~lfds~~t~~~~l~~~~-~mv~~l~vn~e~~~~a~~~gfs~aTdlAd~lv~kG 379 (459)
T COG0165 303 ALTGLLTIMKG--LPLAYNRDLQEDKEPLFDSVDTLEDSLRVLA-GMVSGLTVNKERMREAAEAGFSTATDLADYLVRKG 379 (459)
T ss_pred HHHHHHHHHhc--CcccccHHHHhhhHHHHHHHHHHHHHHHHHH-HHHccCeeCHHHHHHHhhcccchHHHHHHHHHHcC
Confidence 99999988888 6666667765 6789999999988887655 599999999999999999999999999976
Q ss_pred cChHHHHHH----HHHHHHcCCCHHHHHHHc----CCCCHHHHhhhcCccccc
Q psy10160 511 IGYDKAAKI----AKTAHKEGTTLKVAALKL----GYLTEEEFNKWVVPEDML 555 (558)
Q Consensus 511 l~~~~a~~~----~~~a~~~~~~~~~~~~~~----~~l~~~~~~~~~~p~~~~ 555 (558)
++||+||++ |+.+.+.|+++.++..+. ..+-++++.++++|+..+
T Consensus 380 vPFReAh~ivG~~v~~~~~~~~~l~~l~~~~~~~~~~~~~~dv~~~l~~~~~v 432 (459)
T COG0165 380 VPFREAHEIVGEAVRRAEERGKDLADLSLEELQSISPLIDEDVYEVLTPEESV 432 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCHHhccHHHHhhhccccchHHHHHhchHHHH
Confidence 599999985 567777888877765542 335667888888876544
|
|
| >KOG1317|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=364.28 Aligned_cols=297 Identities=65% Similarity=0.953 Sum_probs=279.8
Q ss_pred CCCCCcccccchhhhhhhhh-hhhhhcccccchhhhhhhHHHhhcccccccccchHHHHHhHhhhhhh---hc-CCC---
Q psy10160 261 GQLPSYGPHIKRAVEAEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDPNDRQALNIVSIFYF---TY-LVK--- 332 (558)
Q Consensus 261 g~~~~~~~w~~~~l~~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~~~~~~l~~~~~~~~~---~g-~~g--- 332 (558)
..+.|.++.+++.++....+ ++++..||||.|+|.|.|+|++|.+ |++++...++|+.....++.. +| ++|
T Consensus 182 ~~L~P~l~~L~~aL~aKs~EfkdIiKIGRTHtqDAvPLTLGQEFsg-Y~qQ~~ngl~Rv~~~lpr~y~LA~GGTAVGTGL 260 (487)
T KOG1317|consen 182 SRLIPALTNLRDALEAKSKEFKDIIKIGRTHTQDAVPLTLGQEFSG-YVQQVTNGLQRVAATLPRLYQLAQGGTAVGTGL 260 (487)
T ss_pred HhhhHHHHHHHHHHHhhhHHHHHHHHhcccccccccccchhhhhhh-HHHHHHHHHHHHHhhhhHHHHHhcCCccccccc
Confidence 35677888899988888888 9999999999999999999999999 999999999999876655433 33 444
Q ss_pred -CChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCccccceecCCCCC
Q psy10160 333 -LSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEP 411 (558)
Q Consensus 333 -~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~d~~~~~s~~~~e~~e~~~~~~~~ 411 (558)
+-.||.+++.++++++.||++-..+|-|++.+.||.++|+.++|-.+|.+|.|||+|||++.||||.++||+.+|+..+
T Consensus 261 NTr~GFaeK~a~~va~ltgLpFvtApNkFEALAahDA~VE~~GalNt~A~SlmKianDIRfLGSGPRcGlgEL~LPENEP 340 (487)
T KOG1317|consen 261 NTRKGFAEKIAARVAELTGLPFVTAPNKFEALAAHDAMVEVSGALNTIAVSLMKIANDIRFLGSGPRCGLGELMLPENEP 340 (487)
T ss_pred cccccHHHHHHHHHHHHhCCCceecccHHHHHHhhhhHHHhcccHHHHHHHHHHHhhhhhhccCCCCCCccccccCCCCC
Confidence 4457778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhcCcccCHH
Q psy10160 412 GSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIRLIADSATAFTDKCVSGIVANEE 491 (558)
Q Consensus 412 gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~ 491 (558)
||||||+|+||..+|.+...|.+++|+..++.....+++||+|++.+++..++|.++.++.++...|...|+.+|+.|+|
T Consensus 341 GSSIMPGKVNPTQcEamTmvcaQVMGN~vAvtvgGsnGhFELNVFKP~i~~nvL~SirLl~D~~~sF~~nCV~GI~aN~e 420 (487)
T KOG1317|consen 341 GSSIMPGKVNPTQCEAMTMVCAQVMGNHVAVTVGGSNGHFELNVFKPLIASNVLHSIRLLADASVSFTKNCVVGIEANKE 420 (487)
T ss_pred CcccCCCCCCcHHHHHHHHHHHHHhcCceEEEecccCceeEEecchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCCHH
Confidence 99999999999999999999999999999888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhhcCcccccCCC
Q psy10160 492 NIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558 (558)
Q Consensus 492 ~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~ 558 (558)
|+.+.+.+++|++|+|.+.+||+.|..++|.|+++|.++++...+.+++++++++++..|+.++|++
T Consensus 421 rI~kll~eSLMLVTALNPhIGYD~aAkiAKtAhKng~TLk~eal~lG~lTeeqFdewV~Pe~Mlgpk 487 (487)
T KOG1317|consen 421 RIAKLLNESLMLVTALNPHIGYDNAAKIAKTAHKNGTTLKEEALKLGVLTEEQFDEWVVPEKMLGPK 487 (487)
T ss_pred HHHHHHHhhhhhhhccCCccCchhHHHHHHHHhhcCCcHHHHHHHhcCCCHHHHHhhhCHHhccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999985
|
|
| >TIGR00928 purB adenylosuccinate lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-51 Score=416.56 Aligned_cols=308 Identities=22% Similarity=0.186 Sum_probs=262.1
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|.|.+.+|+..++.. ...+.....+...+.. ...+ ++++|.||||+|+|+|+|+|||+++ |++.|.
T Consensus 88 ~~~vh~g~SsnD~~~Ta~~-l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~T~G~~~~~-~~~~l~ 165 (435)
T TIGR00928 88 GEFIHFGATSNDIVDTALA-LLLRDALEIILPKLKQLIDRLKDLAVEYKDTVMLGRTHGQHAEPTTLGKKFAL-WADEMK 165 (435)
T ss_pred hhheeecccHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHhHHhcCCCCcchhHHHHHHH-HHHHHH
Confidence 6789999999999998876 4444444333333322 2233 7899999999999999999999998 999999
Q ss_pred chHHHHHhHhhhhhh---hcCCCCChhHH---HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHH
Q psy10160 313 PNDRQALNIVSIFYF---TYLVKLSELLE---TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKI 386 (558)
Q Consensus 313 ~~~~~l~~~~~~~~~---~g~~g~~~~~~---~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~ 386 (558)
|+++||.+++.+++. +|++||+...+ +.+++++|+.|||+.+...| ++++||+++|++++|++++++|+||
T Consensus 166 r~~~rL~~~~~~~~~~~lgGa~Gt~~~~~~~~~~~~~~~a~~LGl~~~~~~~---~~~~rD~~~e~~~~l~~la~~L~ri 242 (435)
T TIGR00928 166 RQLERLLQAKERIKVGGISGAVGTHAAAYPLVEEVEERVTEFLGLKPVPIST---QIEPRDRHAELLDALALLATTLEKF 242 (435)
T ss_pred HHHHHHHHHHHHhHhhcccchhhhHhhccccHHHHHHHHHHhcCCCCCCCCc---cccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999988776665 45666666554 36789999999999776555 7899999999999999999999999
Q ss_pred hhhhhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHH
Q psy10160 387 ANDIRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNV 464 (558)
Q Consensus 387 a~d~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (558)
|+||++|++ +||+|+.+|. +++|||||||||||+.+|+++++++.+.|+.+.++.. ..+++++|...|..+|.+
T Consensus 243 a~Dl~l~s~---~~~~el~~~~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~-~~~~~erd~~~~~~~~~~ 318 (435)
T TIGR00928 243 AVDIRLLQR---TEHFEVEEPFGKGQVGSSAMPHKRNPIDFENVCGLARVIRSVLSPALEN-VPLWHERDLTDSSVERII 318 (435)
T ss_pred HHHHHHHHh---ccccceecccCCCCCCcCCCCcCcCcHHHHHHHHHHHHHHHHHHHHHHH-hhHHhccCChHHHHHHHH
Confidence 999999995 8999999996 4899999999999999999999999999999887644 367899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHh--hhhhcc-----cccChHHHHHH----HHHHHH-cCCCHHH
Q psy10160 465 LRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLM--LVTALN-----PHIGYDKAAKI----AKTAHK-EGTTLKV 532 (558)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~--~~~~la-----~~l~~~~a~~~----~~~a~~-~~~~~~~ 532 (558)
++++..+..+++.++.+++++|+||++||+++++.++. ++++|+ +.+||++||++ ++.+.+ +|.++++
T Consensus 319 l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~~a~~la~~L~~~g~g~~~Ah~~v~~~~~~a~~~~~~~l~~ 398 (435)
T TIGR00928 319 LPDSFILADIMLKTTLKVVKKLVVNPENILRNLELTLGLIASERVLIALVERGMGREEAYEIVRELAMGAAEVDEPDLLE 398 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHhHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHcccccHHH
Confidence 99999999999999999999999999999999986665 444443 36899999995 566777 8999999
Q ss_pred HHHHc----CCCCHHHHhhhcCcccccCC
Q psy10160 533 AALKL----GYLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 533 ~~~~~----~~l~~~~~~~~~~p~~~~~~ 557 (558)
++.+. ..++++++++++||.+|+|.
T Consensus 399 ~~~~~~~~~~~l~~~~l~~~ldp~~~~~~ 427 (435)
T TIGR00928 399 FLLADERITKYLKEEELAELLDPETYIGN 427 (435)
T ss_pred HHhhCccchhhcCHHHHHHcCCHHHHhCh
Confidence 98875 56899999999999999984
|
This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP. |
| >PRK08540 adenylosuccinate lyase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-51 Score=416.18 Aligned_cols=309 Identities=23% Similarity=0.243 Sum_probs=261.0
Q ss_pred eceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhcccccccc
Q psy10160 240 EGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNL 311 (558)
Q Consensus 240 ~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l 311 (558)
.+.++|.|.+.+|+..++.. ...+.....+...+.. ...+ .+++|.||||+|+|+|+|+|||+++ |++.|
T Consensus 93 ~~~~vH~g~S~nDi~~Ta~~-L~lr~~l~~l~~~L~~l~~~L~~~A~~~~~~~m~grTH~Q~A~P~T~G~~~~~-~~~~l 170 (449)
T PRK08540 93 AGEYVHFGATSNDIIDTATA-LQLKDSLEILEEKLKKLRGVLLKKAEEHKNTVCIGRTHGQHAVPTTYGMRFAI-WASEI 170 (449)
T ss_pred hhcceecCccHhhHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhcCCCcCeehhHHHHHHH-HHHHH
Confidence 37889999999999998876 4444444333333322 2233 7899999999999999999999998 99999
Q ss_pred cchHHHHHhHhh---hhhhhcCCCCChhHH---HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHH
Q psy10160 312 DPNDRQALNIVS---IFYFTYLVKLSELLE---TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMK 385 (558)
Q Consensus 312 ~~~~~~l~~~~~---~~~~~g~~g~~~~~~---~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k 385 (558)
.|+++||.+++. ..+++|++|++++++ ..+.+++|+.|||+.+...| ++++||+++|++++|+.++++|+|
T Consensus 171 ~r~~~rL~~~~~~~~~~~lGgavGt~~a~~~~~~~i~~~~a~~LGl~~~~~~~---~~~~rd~~~e~~~~l~~~a~~l~k 247 (449)
T PRK08540 171 QRHLERLEQLKPRVCVGQMTGAVGTQAAFGEKGIEIQKRVMEILGLKPVLISN---QVIQRDRHAEFMMFLANIATTLDK 247 (449)
T ss_pred HHHHHHHHHHHHhhheccccccccchhhCCCccHHHHHHHHHHcCCCCCCCcC---CccccHHHHHHHHHHHHHHHHHHH
Confidence 999999987764 556677888876554 45668999999999766555 579999999999999999999999
Q ss_pred HhhhhhhhccCCCccccceecC--CCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHH
Q psy10160 386 IANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSN 463 (558)
Q Consensus 386 ~a~d~~~~~s~~~~e~~e~~~~--~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (558)
||+||++|++ +|||||.++ ++++|||||||||||+.+|+++++++++.|....++ .....+++++...|..+|.
T Consensus 248 ia~Dl~l~s~---~e~gei~e~~~~~~~GSSiMP~K~NP~~~E~i~~~a~~~~g~~~~~~-~~~~~~~~rd~~~~~~e~~ 323 (449)
T PRK08540 248 IGLEIRNLQR---TEIGEVEEEFGKKQVGSSTMPHKRNPITSEQICGLARVVRSNVEPAL-LNNPLWDERDLTNSSCERI 323 (449)
T ss_pred HHHHHHHHHh---hhhhhhhcccCCCCCCcCCCCCCcCcHHHHHHHHHHHHHHHHHHHHH-hcchhhhccCCchhHHHHH
Confidence 9999999994 999999865 569999999999999999999999999999987654 4445568888888888999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHh--hhHhhhhhcc-----cccChHHHHHH----HHHHHHcCCCHHH
Q psy10160 464 VLRSIRLIADSATAFTDKCVSGIVANEENIHRLLH--ESLMLVTALN-----PHIGYDKAAKI----AKTAHKEGTTLKV 532 (558)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~--~~~~~~~~la-----~~l~~~~a~~~----~~~a~~~~~~~~~ 532 (558)
+++++..+..+++.++..++++|+||++||+++++ ..++++++|+ +.+||++||++ ++.+..+|+++.+
T Consensus 324 ~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~~ae~la~~L~~~glg~~~Ah~~v~~l~~~a~~~g~~l~e 403 (449)
T PRK08540 324 IFPESCVLTDHILKLMIKVLEGLRFNPENIRRNLELTKGLIMAEAVMIELAKRGMGRQEAHELVRQAAMKAHEEGRHLKE 403 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHHhcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999987 5666666664 35899999875 4567889999999
Q ss_pred HHHHc----CCCCHHHHhhhcCcccccCC
Q psy10160 533 AALKL----GYLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 533 ~~~~~----~~l~~~~~~~~~~p~~~~~~ 557 (558)
++.+. ..|+++++++++||.+|+|.
T Consensus 404 ~~~~~~~~~~~l~~~~l~~~ldp~~~~g~ 432 (449)
T PRK08540 404 VLLEDEEVMKYLTEEELEELLDPETYIGT 432 (449)
T ss_pred HHHhChhhhccCCHHHHHHHcCHHHhcCc
Confidence 98876 56899999999999999985
|
|
| >PRK06705 argininosuccinate lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-51 Score=417.93 Aligned_cols=308 Identities=15% Similarity=0.128 Sum_probs=256.7
Q ss_pred eceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhcccccccc
Q psy10160 240 EGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNL 311 (558)
Q Consensus 240 ~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l 311 (558)
.+.++|+|.+.+|+..++.. ...+..+.-+...+.. ...+ .+++|.||||+|+|+|+|+|||+++ |++.|
T Consensus 106 ~g~~lH~GrSrnD~v~Ta~~-L~lr~~l~~l~~~l~~l~~~l~~~A~~~~~t~m~g~TH~Q~AqP~T~G~~l~~-~~~~l 183 (502)
T PRK06705 106 FVSNMHIGRSRNDMGVTMYR-MSLRRYVLRLMEHHLLLQESILQLAADHKETIMPAYTHTQPAQPTTFGHYTLA-IYDTM 183 (502)
T ss_pred hhccccCCCCHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEecccCCccceehHHHHHHHH-HHHHH
Confidence 37889999999999998876 4455554333333332 2222 7899999999999999999999998 99999
Q ss_pred cchHHHHHhHhhhhh---hhcCCCCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhh
Q psy10160 312 DPNDRQALNIVSIFY---FTYLVKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAN 388 (558)
Q Consensus 312 ~~~~~~l~~~~~~~~---~~g~~g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~ 388 (558)
.|+++||.+++.+++ +||++|++++|+ .+++++|++|||+ .+..|++|++++||+++|+++++++++++|+|||+
T Consensus 184 ~r~~~rL~~~~~r~~~~plGgaag~gt~~~-~~r~~~a~~LGf~-~~~~ns~~a~~~rD~~~e~~~~la~~~~~L~Ria~ 261 (502)
T PRK06705 184 QRDLERMKKTYKLLNQSPMGAAALSTTSFP-IKRERVADLLGFT-NVIENSYDAVAGADYLLEVSSLLMVMMTNTSRWIH 261 (502)
T ss_pred HHHHHHHHHHHHHhCcCCchhhhhccCCch-HHHHHHHHHcCCC-CCcCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998776555 456788888886 8999999999999 46779999999999999999999999999999999
Q ss_pred hhhhhccCCCccccceecCCC-CCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHH
Q psy10160 389 DIRFLASGPRCGLGELSLPEN-EPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRS 467 (558)
Q Consensus 389 d~~~~~s~~~~e~~e~~~~~~-~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (558)
||++|+| +|||+|.+++. .+|||||||||||+.+|+++++++++.|++.+++..+++.+. .+..+ .+|.++|.
T Consensus 262 Dl~~~ss---~e~g~iel~e~~~~gSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~l~~~~~~~~--~~~~d-~q~~~~~~ 335 (502)
T PRK06705 262 DFLLLAT---KEYDGITVARPYVQISSIMPQKRNPVSIEHARAITSSALGEAFTVFQMIHNTPF--GDIVD-TEDDLQPY 335 (502)
T ss_pred HHHHHcC---CCCCeeeecCCCCCccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--hhhhh-hHhhhhhH
Confidence 9999996 89998777765 589999999999999999999999999999999877766433 33333 45666777
Q ss_pred HHHHHHHH---HHHHHhhhcCcccCHHHHHHHHhhhHhhhhhccc------ccChHHHHHHH----HHHHHcCCCHHHHH
Q psy10160 468 IRLIADSA---TAFTDKCVSGIVANEENIHRLLHESLMLVTALNP------HIGYDKAAKIA----KTAHKEGTTLKVAA 534 (558)
Q Consensus 468 ~~~~~~~~---~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~------~l~~~~a~~~~----~~a~~~~~~~~~~~ 534 (558)
+..+.+.+ +..+..++++|+||++||++++..+++++|+||+ .+||++||++| +.+.++|+++.++.
T Consensus 336 ~~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~g~~~At~la~~Lv~~~Gl~fr~Ah~iV~~~v~~a~~~~~~l~~~~ 415 (502)
T PRK06705 336 LYKGIEKAIRVFCIMNAVIRTMKVEEDTLKRRSYKHAITITDFADVLTKNYGIPFRHAHHAASVIANMSLEQKKELHELC 415 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCHHHhh
Confidence 77777777 7788889999999999999999999988888864 48999999865 45777899888876
Q ss_pred HHc----------CCCCHHHHhhhcCcccccCC
Q psy10160 535 LKL----------GYLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 535 ~~~----------~~l~~~~~~~~~~p~~~~~~ 557 (558)
.+. ..++++++++++||++|++.
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~~ldp~~~v~~ 448 (502)
T PRK06705 416 FKDVNIYLQEKFKIQLLEKEWEEIISPEAFIQK 448 (502)
T ss_pred HHHHHhhhhhhhhhcCCHHHHHHHCCHHHHHhh
Confidence 542 34788999999999999873
|
|
| >PRK06390 adenylosuccinate lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=411.23 Aligned_cols=308 Identities=19% Similarity=0.227 Sum_probs=259.0
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|+|.+.+|+..++.. ...+..+..+...+.. ...+ ++++|.||||+|+|+|+|||||+++ |++.|.
T Consensus 93 ~~~iH~G~SsnDi~~Ta~~-L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~T~G~~~~~-~~~~l~ 170 (451)
T PRK06390 93 KNYVHFGVTSNDINDTATA-LQIHDFVSIIKDDIKNLMETLIKLIDEYKDSPMMGRTHGQHASPITFGLKFAV-YLDEMS 170 (451)
T ss_pred hhheecCccHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhCCCcCeehhHHHHHHH-HHHHHH
Confidence 6889999999999999876 4555554444443332 2233 8899999999999999999999998 999999
Q ss_pred chHHHHHhHhhhh---hhhcCCCCChhHH---HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHH
Q psy10160 313 PNDRQALNIVSIF---YFTYLVKLSELLE---TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKI 386 (558)
Q Consensus 313 ~~~~~l~~~~~~~---~~~g~~g~~~~~~---~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~ 386 (558)
|+++||.+++.++ +++|++|+.+++| +.+++++|+.|||+.+... +++++||+++|++++|++++++|+||
T Consensus 171 r~~~RL~~~~~r~~~~~~~gavGt~a~~g~~~~~~~~~~a~~LGl~~~~~~---~~~~~rD~~~e~~~~l~~la~~l~ki 247 (451)
T PRK06390 171 RHLDRLTEMGDRAFAGKVLGPVGTGAALGKDALDIQNRVMEILGIYSEIGS---TQIVNRDRYIEYLSVINGISVTLEKI 247 (451)
T ss_pred HHHHHHHHHHHHhhhhccCChhcChhhCCCcHHHHHHHHHHHcCCCCCCCc---cccccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999887544 5578999999887 5789999999999965443 37899999999999999999999999
Q ss_pred hhhhhhhccCCCccccceecC---CCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHH
Q psy10160 387 ANDIRFLASGPRCGLGELSLP---ENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSN 463 (558)
Q Consensus 387 a~d~~~~~s~~~~e~~e~~~~---~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (558)
|+||++|+| +||||+.++ ++++|||||||||||+.+|+++++++.+.+... ........+++++...|..+|.
T Consensus 248 a~Di~l~ss---~e~g~v~E~~~~~~~~GSSiMP~KrNPv~~E~i~~~a~~~~~l~~-~~~~~~~~~~erd~~~~~~e~~ 323 (451)
T PRK06390 248 ATEIRNLQR---PEIDEVSEYFDEESQVGSSSMPSKVNPINSENVVSLSRFIRSLII-PEYEAGVTWHERDLTNSALERF 323 (451)
T ss_pred HHHHHHHhc---cccchhhcccccCCCCCccCCCCCCCcHHHHHHHHHHHHHHHhHH-HHHHhhhHhhccCCcchHHHHh
Confidence 999999997 788888643 379999999999999999999999988777776 4345555668999888888999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHh-----hhhhccc-ccChHHHHHH----HHHHHHcCCCHHHH
Q psy10160 464 VLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLM-----LVTALNP-HIGYDKAAKI----AKTAHKEGTTLKVA 533 (558)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~-----~~~~la~-~l~~~~a~~~----~~~a~~~~~~~~~~ 533 (558)
.+|.+..+.+.++..+..++++|+||++||+++++.++. +++.|++ .+||++||++ ++.+..+|++++++
T Consensus 324 ~~~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~se~la~~L~~~G~~~~~Ah~~v~~~~~~a~~~g~~l~~~ 403 (451)
T PRK06390 324 TIPYASILIDYVLYNMNDVLSHLIIKEDEIRRNLESDDSIMSESIVRALTLSGMPRQDAHEFVRRASMEARSNGKSLKSS 403 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHhccchhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 899998888999999999999999999999999987333 4456776 4899999985 45577889999998
Q ss_pred HHHc---CCCCHHHHhhhcCcccccCC
Q psy10160 534 ALKL---GYLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 534 ~~~~---~~l~~~~~~~~~~p~~~~~~ 557 (558)
+.+. ..++++++++++||.+|+|.
T Consensus 404 ~~~~~~~~~l~~~~l~~~ldP~~~i~~ 430 (451)
T PRK06390 404 LIEAGILKYIDEKTLDRAMDPANFIGQ 430 (451)
T ss_pred HHhChhhhcCCHHHHHHhcCHHHHhhh
Confidence 8875 44899999999999999984
|
|
| >PLN02646 argininosuccinate lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=411.99 Aligned_cols=308 Identities=17% Similarity=0.103 Sum_probs=250.1
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|.|.+.+|++.++.. ...+..+..+...+.. ...+ .+++|.||||+|+|+|+|+|||+++ |++.|.
T Consensus 114 g~~lH~grSrND~v~Ta~~-L~lr~~l~~l~~~L~~L~~~L~~~A~~~~dtvmpGrTHlQ~AqPiT~G~~l~~-~~~~l~ 191 (474)
T PLN02646 114 AKKLHTARSRNDQVATDTR-LWCRDAIDVIRKRIKTLQVALVELAEKNVDLVVPGYTHLQRAQPVLLSHWLLS-HVEQLE 191 (474)
T ss_pred hCcccCCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEecccCCccceeecHHHHHHH-HHHHHH
Confidence 4578999999999988866 4444444443333332 2223 7899999999999999999999998 999999
Q ss_pred chHHHHHhHhhhhhhhc-CCCCChhHH-HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhhhh
Q psy10160 313 PNDRQALNIVSIFYFTY-LVKLSELLE-TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDI 390 (558)
Q Consensus 313 ~~~~~l~~~~~~~~~~g-~~g~~~~~~-~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~d~ 390 (558)
|+++||.+++.+++.++ +.|+.+|.+ +.+++++|+.|||. .+..|++|++++||+++|+++++++++.+|+|||+||
T Consensus 192 rd~~RL~~~~~r~~~~pLGgga~aGt~~~idr~~~A~~LGf~-~~~~n~~da~~~RD~~~e~~~~la~ia~~LsRia~Dl 270 (474)
T PLN02646 192 RDAGRLVDCRPRVNFCPLGSCALAGTGLPIDRFMTAKDLGFT-APMRNSIDAVSDRDFVLEFLFANSITAIHLSRLGEEW 270 (474)
T ss_pred HHHHHHHHHHHHhhhcCCcchhhcCCCCCCCHHHHHHHhCCC-CCCCChHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887764 224444444 46699999999997 6788999999999999999999999999999999999
Q ss_pred hhhccCCCccccceecCC-CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhH-HHHHHHHH
Q psy10160 391 RFLASGPRCGLGELSLPE-NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLI-VSNVLRSI 468 (558)
Q Consensus 391 ~~~~s~~~~e~~e~~~~~-~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 468 (558)
++|+| +||||+.+|+ .++|||||||||||+.+|++++++++++|++.+++...++.++ .+.++.+ .|..++++
T Consensus 271 ~l~ss---~e~g~v~~~d~~~~GSSiMPqKrNP~~~E~ir~~a~~v~G~~~~~~~~~~~~p~--~~~rD~q~~~~~l~~~ 345 (474)
T PLN02646 271 VLWAS---EEFGFVTPSDAVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTVLALCKGLPT--AYNRDLQEDKEPLFDS 345 (474)
T ss_pred HHHcC---CCCCeeeeCCCCCCCcCCCCCCCCCHHHHHHHHHHHHHHhhhHHHHHHhcCCch--HhhcchhhHHHHHHHH
Confidence 99997 8999999987 5899999999999999999999999999999999866655333 3333332 35555555
Q ss_pred HHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhccc-----ccChHHHHHHH----HHHHHcCCCHHHHHHHc--
Q psy10160 469 RLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNP-----HIGYDKAAKIA----KTAHKEGTTLKVAALKL-- 537 (558)
Q Consensus 469 ~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~-----~l~~~~a~~~~----~~a~~~~~~~~~~~~~~-- 537 (558)
..+...++..+..++++|+||++||+++++.+++++|+|++ .++|++||++| +.+.++|+++.++..+.
T Consensus 346 ~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~At~la~~Lv~~Gi~fr~Ah~iV~~~v~~a~~~g~~l~~l~~~~~~ 425 (474)
T PLN02646 346 VDTVSDMLEVATEFAQNITFNPERIKKSLPAGMLDATTLADYLVRKGVPFRETHHIVGAAVALAESKGCELSDLTLEDLK 425 (474)
T ss_pred HHHHHHHHHHHHHHHccCEECHHHHHHHHHcCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55555566677779999999999999999999999999875 47999999864 56778899999976642
Q ss_pred --CCCCHHHHhhhcCcccccC
Q psy10160 538 --GYLTEEEFNKWVVPEDMLG 556 (558)
Q Consensus 538 --~~l~~~~~~~~~~p~~~~~ 556 (558)
....++++.+++||++++.
T Consensus 426 ~~~~~~~~~~~~~l~~~~~v~ 446 (474)
T PLN02646 426 SINPVFEEDVYEVLGVENSVE 446 (474)
T ss_pred HhcccchHHHHHhCCHHHHHH
Confidence 3345778999999998773
|
|
| >cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-50 Score=410.84 Aligned_cols=306 Identities=18% Similarity=0.169 Sum_probs=257.8
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|+|.+.+|++.++.. ...+..+..+...+.. ...+ ++++|.||||+|+|+|+|||||+++ |++.|.
T Consensus 78 ~~~iH~G~SsnDi~~Ta~~-L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTh~Q~A~P~T~G~~~~~-~~~~l~ 155 (435)
T cd01359 78 GGKLHTGRSRNDQVATDLR-LYLRDALLELLELLLDLQRALLDRAEEHADTIMPGYTHLQRAQPITFGHYLLA-YAEMLE 155 (435)
T ss_pred HhhhhccCCHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEecCCCCCccceeccHHHHHHH-HHHHHH
Confidence 5678999999999998876 4555555444444333 2233 7899999999999999999999998 999999
Q ss_pred chHHHHHhHhhhh---hhhcCCCCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhhh
Q psy10160 313 PNDRQALNIVSIF---YFTYLVKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAND 389 (558)
Q Consensus 313 ~~~~~l~~~~~~~---~~~g~~g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~d 389 (558)
|+++||.+.+.++ +++|++|++++++ .+++++|+.|||+ .+..|.++++++||++++++++|++++++|+|||+|
T Consensus 156 r~~~rL~~~~~~~~~~~lGgaag~gt~~~-~~~~~~a~~LG~~-~~~~~~~~a~~~rd~~~e~~~~l~~~a~~l~ria~D 233 (435)
T cd01359 156 RDLERLADAYKRVNVSPLGAGALAGTTFP-IDRERTAELLGFD-GPTENSLDAVSDRDFVLEFLSAAALLMVHLSRLAED 233 (435)
T ss_pred HHHHHHHHHHHHhCcCCcccccccCCCCC-CCHHHHHHHcCCC-CCccCHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999877555 5677888888886 7899999999999 677788899999999999999999999999999999
Q ss_pred hhhhccCCCccccceecCCC-CCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccc--cccccccchhhHHHHHHH
Q psy10160 390 IRFLASGPRCGLGELSLPEN-EPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSN--GHFELNVFKPLIVSNVLR 466 (558)
Q Consensus 390 ~~~~~s~~~~e~~e~~~~~~-~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 466 (558)
|++|+| +||||+.+|+. .+|||||||||||+.+|+++++++.+.|....++..+.+ .+++++.. ..|..++
T Consensus 234 l~l~~~---~e~gev~lpe~~~~GSS~MP~KrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~~d~~---~~~~~l~ 307 (435)
T cd01359 234 LILWST---QEFGFVELPDAYSTGSSIMPQKKNPDVLELIRGKAGRVIGALAGLLTTLKGLPLAYNKDLQ---EDKEPLF 307 (435)
T ss_pred HHHHcC---CCCCeeeCCCCCCCccccCCCCCCCcHHHHHHHHHHHHhhHHhHHHHHhcCCCCccchhHH---HhhHHHH
Confidence 999996 88999999986 499999999999999999999999999999998766543 22333332 2466677
Q ss_pred HHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhccc------ccChHHHHHH----HHHHHHcCCCHHHHHHH
Q psy10160 467 SIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNP------HIGYDKAAKI----AKTAHKEGTTLKVAALK 536 (558)
Q Consensus 467 ~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~------~l~~~~a~~~----~~~a~~~~~~~~~~~~~ 536 (558)
++..+...++..+..++++|+||+++|++++..++++++++++ .+||++||++ ++.+.++|+++.|++.+
T Consensus 308 ~~~~~~~~al~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~l~~~l~~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~~~~~~ 387 (435)
T cd01359 308 DAVDTLIASLRLLTGVISTLTVNPERMREAAEAGFSTATDLADYLVREKGVPFREAHHIVGRAVRLAEEKGKDLSDLTLA 387 (435)
T ss_pred HHHHHHHHHHHHHHHHHhhCEECHHHHHHHHhcCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCChhhcCHH
Confidence 7777777777777789999999999999999999998888873 5799999985 45677889999998776
Q ss_pred c----CCCCHHHHhhhcCcccccC
Q psy10160 537 L----GYLTEEEFNKWVVPEDMLG 556 (558)
Q Consensus 537 ~----~~l~~~~~~~~~~p~~~~~ 556 (558)
. ..++++++++++||++|++
T Consensus 388 ~~~~~~~l~~~~l~~~ldp~~~~~ 411 (435)
T cd01359 388 ELQAISPLFEEDVREALDPENSVE 411 (435)
T ss_pred HHHhhcccCHHHHHHhCCHHHHHH
Confidence 4 6789999999999999985
|
This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication. |
| >TIGR00838 argH argininosuccinate lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-50 Score=409.32 Aligned_cols=308 Identities=17% Similarity=0.155 Sum_probs=249.7
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|+|.+.+|+..++.. ...+..+..+...+.. ...+ ++++|.||||+|+|+|+|+|||+++ |++.|.
T Consensus 98 g~~iH~g~SrnD~~~Ta~~-L~lr~~l~~l~~~L~~l~~~L~~~A~~~~~~~m~grTH~Q~A~P~T~G~~~~~-~~~~L~ 175 (455)
T TIGR00838 98 GGKLHTGRSRNDQVATDLR-LYLRDHVLELAEALLDLQDALIELAEKHVETLMPGYTHLQRAQPITLAHHLLA-YAEMLL 175 (455)
T ss_pred cCCccCCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeecccccccceeccHHHHHHH-HHHHHH
Confidence 4568999999999888865 3444444333333322 2233 7899999999999999999999998 999999
Q ss_pred chHHHHHhHhhhhhhh---cCCCCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhhh
Q psy10160 313 PNDRQALNIVSIFYFT---YLVKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAND 389 (558)
Q Consensus 313 ~~~~~l~~~~~~~~~~---g~~g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~d 389 (558)
|+++||.+.+.+++.+ |+++++.++ +.+++++|+.|||+. +..|++||+++||+++|++++++.++++|+|||+|
T Consensus 176 r~~~rL~~~~~~~~~~plGg~a~aGt~~-~~~r~~~a~~LG~~~-~~~n~~~a~~~rd~~~e~~~~l~~~a~~L~ria~D 253 (455)
T TIGR00838 176 RDYERLQDALKRVNVSPLGSGALAGTGF-PIDREYLAELLGFDA-VTENSLDAVSDRDFILELLFVAALIMVHLSRFAED 253 (455)
T ss_pred HHHHHHHHHHHHhccCCcchhcccCCCC-CCCHHHHHHHcCCCC-CcCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888766554 443333344 578899999999995 57889999999999999999999999999999999
Q ss_pred hhhhccCCCccccceecCCC-CCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHHH
Q psy10160 390 IRFLASGPRCGLGELSLPEN-EPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSI 468 (558)
Q Consensus 390 ~~~~~s~~~~e~~e~~~~~~-~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (558)
|++|+| +||||+.+|+. ++|||||||||||+.+|+++++++++.|++.+++....+.+++.+.........+++.+
T Consensus 254 l~l~ss---~e~gei~lp~~~~~GSSiMP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~rd~~~~~~~l~~~~ 330 (455)
T TIGR00838 254 LILWST---GEFGFVELPDEFSSGSSIMPQKKNPDVAELIRGKTGRVQGNLTGMLMTLKALPLAYNRDLQEDKEPLFDAL 330 (455)
T ss_pred HHHHhC---CCCCeeeCCCCCCCccCCCCCCcCChHHHHHHHHHHHHhhhHHHHHHHHhcCChHhhhhhHhhHHHHHHHH
Confidence 999997 78999999985 89999999999999999999999999999999987777766665554444334444444
Q ss_pred HHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccc-----cChHHHHHH----HHHHHHcCCCHHHHHHHcC-
Q psy10160 469 RLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPH-----IGYDKAAKI----AKTAHKEGTTLKVAALKLG- 538 (558)
Q Consensus 469 ~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~-----l~~~~a~~~----~~~a~~~~~~~~~~~~~~~- 538 (558)
..+ ..++..+..++++|+||++||++++..+++++|+|++. ++|++||++ ++.|.++|+++.|+..+..
T Consensus 331 ~~~-~~al~~~~~~i~~l~v~~~rm~~~~~~~~~~at~la~~Lv~~g~~~r~Ah~~v~~~~~~a~~~g~~l~~~~~~~~~ 409 (455)
T TIGR00838 331 KTV-ELSLEMATGMLDTITVNKERMEEAASAGFSNATELADYLVRKGVPFREAHHIVGELVATAIERGKGLEELTLEELQ 409 (455)
T ss_pred HHH-HHHHHHHHHHHccCEECHHHHHHHHHcCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 555 44555566699999999999999999999999998864 688899875 4568889999999887652
Q ss_pred ---CCCHHHHhhhcCcccccC
Q psy10160 539 ---YLTEEEFNKWVVPEDMLG 556 (558)
Q Consensus 539 ---~l~~~~~~~~~~p~~~~~ 556 (558)
.+.++++++++||++|+.
T Consensus 410 ~~~~~~~~~l~~~ldp~~~v~ 430 (455)
T TIGR00838 410 KFSPEFDEDVYEALDPESSVE 430 (455)
T ss_pred hhcccCHHHHHHHCCHHHHHH
Confidence 255677999999999874
|
This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens. |
| >cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=390.97 Aligned_cols=274 Identities=23% Similarity=0.238 Sum_probs=235.4
Q ss_pred eceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhcccccccc
Q psy10160 240 EGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNL 311 (558)
Q Consensus 240 ~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l 311 (558)
.+.++|+|.+.+|+..++.. ...+.....+...+.. ...+ ++++|.||||+|+|+|+|+|||+++ |++.|
T Consensus 79 ~~~~vH~g~S~nDi~~Ta~~-l~lr~~l~~l~~~l~~l~~~L~~~A~~~~dt~m~grTH~Q~A~P~T~G~~~~~-~~~~L 156 (381)
T cd01595 79 AGEYVHFGATSQDINDTALA-LQLRDALDIILPDLDALIDALAKLALEHKDTPMLGRTHGQHALPTTFGKKFAV-WAAEL 156 (381)
T ss_pred hhhHeecCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHhhcCCCCCcchhHHHHHHH-HHHHH
Confidence 36789999999999998866 4444444333333222 2233 7899999999999999999999998 99999
Q ss_pred cchHHHHHhHhhhhh---hhcCCCCChhHH---HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHH
Q psy10160 312 DPNDRQALNIVSIFY---FTYLVKLSELLE---TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMK 385 (558)
Q Consensus 312 ~~~~~~l~~~~~~~~---~~g~~g~~~~~~---~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k 385 (558)
.|+++||.+++.+++ ++|++|++++++ +.+++++|+.|||..+...| ++++||+++|+++++++++++|+|
T Consensus 157 ~r~~~rL~~~~~~~~~~~lGga~G~g~~~~~~~~~~~~~~a~~LGl~~~~~~~---~~~~rd~~~e~~~~l~~~~~~l~r 233 (381)
T cd01595 157 LRHLERLEEARERVLVGGISGAVGTHASLGPKGPEVEERVAEKLGLKVPPITT---QIEPRDRIAELLSALALIAGTLEK 233 (381)
T ss_pred HHHHHHHHHHHHhchhhhcccHhhhHhhcCCcHHHHHHHHHHHcCCCCCCCCC---CcccchHHHHHHHHHHHHHHHHHH
Confidence 999999998776554 566788888884 68999999999997544443 244999999999999999999999
Q ss_pred HhhhhhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHH
Q psy10160 386 IANDIRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSN 463 (558)
Q Consensus 386 ~a~d~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (558)
||+||++|+| +|||||.+|+ +++|||||||||||+.+|+++++++++.|++.+++..+ .+++++|...|..+|.
T Consensus 234 ia~Dl~~~~s---~e~gev~~~~~~~~~GSS~MPqK~NP~~~E~i~~~a~~~~g~~~~~~~~~-~~~~erd~~~~~~~~~ 309 (381)
T cd01595 234 IATDIRLLQR---TEIGEVEEPFEKGQVGSSTMPHKRNPIDSENIEGLARLVRALAAPALENL-VQWHERDLSDSSVERN 309 (381)
T ss_pred HHHHHHHHHh---ccccceeccccCCCCCCccCCCcCCcHHHHHHHHHHHHHHHHHHHHHHhh-hHhhccCCcHHHHHHH
Confidence 9999999997 9999999996 48999999999999999999999999999999997666 7889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhH--h----hhhhcccc-cChHHHHHHHHH
Q psy10160 464 VLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESL--M----LVTALNPH-IGYDKAAKIAKT 522 (558)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~--~----~~~~la~~-l~~~~a~~~~~~ 522 (558)
.++++..+..+++.++..++++|+||++||+++++.++ + +++.|++. +||++||+++++
T Consensus 310 ~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~g~~~ae~~~~~L~~~g~g~~~Ah~~v~~ 375 (381)
T cd01595 310 ILPDAFLLLDAALSRLQGLLEGLVVNPERMRRNLDLTWGLILSEAVMMALAKKGLGRQEAYELVKE 375 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccCHHHHHHHHHHHHHhCCCHhHHHHHHHH
Confidence 99999999999999999999999999999999999855 3 34556675 999999999876
|
This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t |
| >PRK09285 adenylosuccinate lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=394.23 Aligned_cols=304 Identities=16% Similarity=0.102 Sum_probs=251.7
Q ss_pred eceeeecccceeEEEEeccCCCCCCCcccc-cchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhccccccc
Q psy10160 240 EGRYCQHHYYSQFCCESCTRAGQLPSYGPH-IKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVN 310 (558)
Q Consensus 240 ~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w-~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~ 310 (558)
.+.++|+|.+++|+.+++.. ...+..... +...+.. ...+ ++++|.||||+|+|+|+||||++++ |++.
T Consensus 113 ~~~~vH~G~Ts~Di~dTa~~-L~lr~~l~~~l~~~L~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~TfG~~~a~-~~~~ 190 (456)
T PRK09285 113 VSEFIHFACTSEDINNLSHA-LMLKEAREEVLLPALRELIDALKELAHEYADVPMLSRTHGQPATPTTLGKEMAN-VAYR 190 (456)
T ss_pred HHhHccCCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeceecCCCCeeehHHHHHHH-HHHH
Confidence 36889999999999998877 555555554 4443333 2233 7899999999999999999999998 9999
Q ss_pred ccchHHHHHhHhhhhhhhcCCCCC-hhH---H----HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHH
Q psy10160 311 LDPNDRQALNIVSIFYFTYLVKLS-ELL---E----TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVS 382 (558)
Q Consensus 311 l~~~~~~l~~~~~~~~~~g~~g~~-~~~---~----~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 382 (558)
|.|+++||.++...++++|++|++ +++ + +.+.+.+++.|||..++..| ++.+||+++|++++|+.++++
T Consensus 191 l~r~~~rL~~~~~~g~~~GAvGt~~a~~~~~~~~~~~~v~~~~~~~LGL~~~~~~~---~v~~rD~~~e~~~~la~~a~~ 267 (456)
T PRK09285 191 LERQLKQLEAVEILGKINGAVGNYNAHLAAYPEVDWHAFSREFVESLGLTWNPYTT---QIEPHDYIAELFDAVARFNTI 267 (456)
T ss_pred HHHHHHHHHHHHHhhhcccccccHHHHhhhcCCccHHHHHHHHHHHhCCCCCCCcc---chhccHHHHHHHHHHHHHHHH
Confidence 999999999998888999999998 443 2 35677777799998655444 369999999999999999999
Q ss_pred HHHHhhhhhhhccCCCccccceecC--CCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhH
Q psy10160 383 LMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLI 460 (558)
Q Consensus 383 l~k~a~d~~~~~s~~~~e~~e~~~~--~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (558)
|+|||+||++|++ +||+.++ .+++|||||||||||+.+|+++++++.+.+.+..++..+...++|++...|..
T Consensus 268 L~kia~Di~ll~~-----~~e~~e~~~~~~~GSS~MPhKrNPv~~E~i~~~a~~~~~~~~~~~~~~~~~~~eRD~~~~~~ 342 (456)
T PRK09285 268 LIDLDRDVWGYIS-----LGYFKQKTKAGEIGSSTMPHKVNPIDFENSEGNLGLANALLEHLAAKLPISRWQRDLTDSTV 342 (456)
T ss_pred HHHHHHHHHHHhC-----chhhhccCCCCCCCCCCCCCCcCchHHHHHHHHHHHHHHHHHHHHhhccHHhhCCcCchhhh
Confidence 9999999999996 4555443 47999999999999999999999999999888777655435679999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhh-----hhcccccChHHHHHHHH----HHHHcCCCHH
Q psy10160 461 VSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLV-----TALNPHIGYDKAAKIAK----TAHKEGTTLK 531 (558)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~-----~~la~~l~~~~a~~~~~----~a~~~~~~~~ 531 (558)
+|.+ +++..+...++..+..++++|+||++||++|++.++.+. +.|++ +|+++||++|+ .+.++|.+|+
T Consensus 343 e~~~-~~~~~~~~~~l~~~~~~l~~L~V~~~rm~~nl~~~~~~~sE~~~~~l~~-~gr~~A~~~v~~~~~~~~~~~~~~~ 420 (456)
T PRK09285 343 LRNL-GVAFGYSLIAYDSLLKGLGKLEVNEARLAEDLDANWEVLAEPIQTVMRR-YGIENPYEKLKELTRGKRITAEALR 420 (456)
T ss_pred hcch-HHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhcCcchHHHHHHHHHH-hChHhHHHHHHHHHHHHHhccCCHH
Confidence 9998 999999999999999999999999999999986555433 35566 89999998765 4557899999
Q ss_pred HH---HHHcCCCCHHHHhhhcCcccccCC
Q psy10160 532 VA---ALKLGYLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 532 ~~---~~~~~~l~~~~~~~~~~p~~~~~~ 557 (558)
|+ +.+...+. ++| .+|||++|+|.
T Consensus 421 e~~~~l~~~~~~~-~~l-~~~~p~~ylg~ 447 (456)
T PRK09285 421 EFIDGLDLPEEAK-ARL-KALTPANYIGL 447 (456)
T ss_pred HHHHHhcCCHhHH-HHH-HcCCHHHHHhh
Confidence 99 66544333 678 99999999984
|
|
| >cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-48 Score=387.39 Aligned_cols=274 Identities=19% Similarity=0.187 Sum_probs=234.9
Q ss_pred eceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhcccccccc
Q psy10160 240 EGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNL 311 (558)
Q Consensus 240 ~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l 311 (558)
.+.++|.|.+.+|+..++.. ...+.....+...+.. ...+ ++++|.||||+|+|+|+|+|||+++ |++.|
T Consensus 81 ~~~~lH~G~S~nDi~~ta~~-L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~TfG~~l~~-~~~~L 158 (387)
T cd01360 81 AGRYIHFGLTSSDVVDTALA-LQLREALDIILKDLKELLEVLKKKALEHKDTVMVGRTHGIHAEPTTFGLKFAL-WYAEF 158 (387)
T ss_pred hhhheeCCCChhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeehhhcCCcceeehHHHHHHH-HHHHH
Confidence 47889999999999998876 4444444333333332 2223 7899999999999999999999998 99999
Q ss_pred cchHHHHHhHhh---hhhhhcCCCCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhh
Q psy10160 312 DPNDRQALNIVS---IFYFTYLVKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAN 388 (558)
Q Consensus 312 ~~~~~~l~~~~~---~~~~~g~~g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~ 388 (558)
.|+++||.+++. .++++|++|+++++++.++++++++|||+.+...| ++++||+++|+++++++++++|+|||+
T Consensus 159 ~r~~~rL~~~~~~~~~~~lgga~Gt~~~~~~~~~~~~a~~LG~~~~~~~~---~~~~rD~~~e~~~~la~~~~~L~ria~ 235 (387)
T cd01360 159 KRHLERLKEARERILVGKISGAVGTYANLGPEVEERVAEKLGLKPEPIST---QVIQRDRHAEYLSTLALIASTLEKIAT 235 (387)
T ss_pred HHHHHHHHHHHHHhHhhccchHhhcCccCCHHHHHHHHHHcCCCCCCCCC---cccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998764 55667789999999867999999999999766555 679999999999999999999999999
Q ss_pred hhhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHH
Q psy10160 389 DIRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLR 466 (558)
Q Consensus 389 d~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (558)
||++|++ +|||||.+|. +++|||||||||||+.+|+++++++.+.|++..++ .....+++++...|..+|..++
T Consensus 236 Dl~~~s~---~e~gel~e~~~~~~~GSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~-~~~~~~~~rd~~~~~~~~~~l~ 311 (387)
T cd01360 236 EIRHLQR---TEVLEVEEPFSKGQKGSSAMPHKRNPILSENICGLARVIRSNVIPAL-ENVALWHERDISHSSVERVILP 311 (387)
T ss_pred HHHHHhh---ccccceecCCCCCCCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hhhHHhcCCCcchhHHHHHHHH
Confidence 9999995 9999999984 57999999999999999999999999999987654 3444567888888888899999
Q ss_pred HHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhh--hHhhhhhcc----c-ccChHHHHHHHHH
Q psy10160 467 SIRLIADSATAFTDKCVSGIVANEENIHRLLHE--SLMLVTALN----P-HIGYDKAAKIAKT 522 (558)
Q Consensus 467 ~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~--~~~~~~~la----~-~l~~~~a~~~~~~ 522 (558)
++..+...++..+..++++|+||++||+++++. +++++++++ + .+||++||++|.+
T Consensus 312 ~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~~ae~la~~L~~~g~~~r~Ah~~V~~ 374 (387)
T cd01360 312 DATILLDYILRRMTRVLENLVVYPENMRRNLNLTKGLIFSQRVLLALVEKGMSREEAYEIVQR 374 (387)
T ss_pred HHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999999999999999999999999985 666676665 4 4899999999877
|
This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). |
| >PRK00855 argininosuccinate lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-48 Score=396.13 Aligned_cols=306 Identities=18% Similarity=0.159 Sum_probs=246.8
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|+|.+.+|++.++.. ...+..+..+...+.. ...+ .+++|.||||+|+|+|+|+|||+++ |++.|.
T Consensus 102 g~~iH~g~SrnD~~~Ta~~-L~~r~~l~~l~~~L~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~P~T~G~~l~~-~~~~L~ 179 (459)
T PRK00855 102 GGKLHTGRSRNDQVATDLR-LYLRDEIDEIAELLLELQKALLDLAEEHADTIMPGYTHLQRAQPVTFGHHLLA-YAEMLA 179 (459)
T ss_pred cCcccCCCCHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcCCccceeecHHHHHHH-HHHHHH
Confidence 4568899999999888865 3344333333332222 2233 7899999999999999999999998 999999
Q ss_pred chHHHHHhHhhhh---hhhcCCCCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhhh
Q psy10160 313 PNDRQALNIVSIF---YFTYLVKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAND 389 (558)
Q Consensus 313 ~~~~~l~~~~~~~---~~~g~~g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~d 389 (558)
|+++||.+.+.++ ++||++|++++++ .+++++|+.|||+. +..|++||+++||++++++++|+.++++|+|||+|
T Consensus 180 r~~~rL~~~~~~~~~~plGgaag~gt~~~-~~r~~~a~~LG~~~-~~~n~~~a~~~rd~~~e~~~~l~~la~~L~ria~D 257 (459)
T PRK00855 180 RDLERLRDARKRVNRSPLGSAALAGTTFP-IDRERTAELLGFDG-VTENSLDAVSDRDFALEFLSAASLLMVHLSRLAEE 257 (459)
T ss_pred HHHHHHHHHHHHHhhcCcchhhhcCCCCC-cCHHHHHHHcCCCC-CCCCHHHHHHccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887655 4556777777775 78999999999995 78899999999999999999999999999999999
Q ss_pred hhhhccCCCccccceecCCC-CCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccc--cccccchhhHHHHHHH
Q psy10160 390 IRFLASGPRCGLGELSLPEN-EPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGH--FELNVFKPLIVSNVLR 466 (558)
Q Consensus 390 ~~~~~s~~~~e~~e~~~~~~-~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 466 (558)
|++|+| .||||+.+|+. ++|||||||||||+.+|++++.++++.|++.+++...++.+ ++++... .+..++
T Consensus 258 l~l~ss---~e~gei~~p~~~~~gSSiMPqK~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~rD~~~---~~~~l~ 331 (459)
T PRK00855 258 LILWSS---QEFGFVELPDAFSTGSSIMPQKKNPDVAELIRGKTGRVYGNLTGLLTVMKGLPLAYNRDLQE---DKEPLF 331 (459)
T ss_pred HHHHhC---cCCCeEeCCCCCCCCcCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHhcCchHHhhhhhhh---hHHHHH
Confidence 999997 79999999986 59999999999999999999999999999998876554432 4444322 233444
Q ss_pred HHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccc-----cChHHHHHH----HHHHHHcCCCHHHHHHHc
Q psy10160 467 SIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPH-----IGYDKAAKI----AKTAHKEGTTLKVAALKL 537 (558)
Q Consensus 467 ~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~-----l~~~~a~~~----~~~a~~~~~~~~~~~~~~ 537 (558)
++..+...++..+..++++|+||+++|++++..+++++|+|++. ++|++||++ ++++.++|+++.++..+.
T Consensus 332 ~~~~~~~~al~~~~~~l~~l~v~~~~m~~~l~~~~~~at~la~~Lv~~gi~~r~Ah~~v~~~~~~a~~~g~~~~~~~~~~ 411 (459)
T PRK00855 332 DAVDTLKLSLEAMAGMLETLTVNKERMREAAGKGFSTATDLADYLVRKGVPFREAHEIVGKAVREAEERGVDLADLSLEE 411 (459)
T ss_pred HHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHHhHHH
Confidence 44444455555666699999999999999999999999999864 588888875 567888999999987653
Q ss_pred ----CCCCHHHHhhhcCcccccC
Q psy10160 538 ----GYLTEEEFNKWVVPEDMLG 556 (558)
Q Consensus 538 ----~~l~~~~~~~~~~p~~~~~ 556 (558)
..+.++++.+++||+.++.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~v~ 434 (459)
T PRK00855 412 LQAFSPLITEDVYEVLTPEGSVA 434 (459)
T ss_pred HHHhcccchHHHHHHhChHHHHH
Confidence 3355777989999988764
|
|
| >PRK04833 argininosuccinate lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-48 Score=393.34 Aligned_cols=304 Identities=14% Similarity=0.123 Sum_probs=244.1
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|+|.+.+|++.++.. ...+..+..+...+.. ...+ ++++|.||||+|+|+|+|+|||+++ |++.|.
T Consensus 100 g~~lH~grSrnD~~~Ta~r-l~~r~~l~~l~~~l~~l~~~L~~~A~~~~~tvm~GrTH~Q~AqP~T~G~~~~~-~~~~l~ 177 (455)
T PRK04833 100 GKKLHTGRSRNDQVATDLK-LWCKDQVAELLTALRQLQSALVETAENNQDAVMPGYTHLQRAQPVTFAHWCLA-YVEMLA 177 (455)
T ss_pred cCcccCCCCchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEeccccCccceeccHHHHHHH-HHHHHH
Confidence 5578999999999998876 4444444333333332 2223 7899999999999999999999998 999999
Q ss_pred chHHHHHhHhhhhhhh---cC--CCCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHh
Q psy10160 313 PNDRQALNIVSIFYFT---YL--VKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIA 387 (558)
Q Consensus 313 ~~~~~l~~~~~~~~~~---g~--~g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a 387 (558)
|+++||..++.+++.+ |+ +||... .+++++|++|||+. +..|++|++++||+++|++++|++++++|+|||
T Consensus 178 r~~~rL~~~~~~~~~~plGgaA~~GT~~~---~dr~~~a~~LGf~~-~~~n~~~a~~~rd~~~e~~~~l~~~a~~L~ria 253 (455)
T PRK04833 178 RDESRLQDALKRLDVSPLGSGALAGTAYE---IDREQLAGWLGFAS-ATRNSLDSVSDRDHVLELLSDASISMVHLSRFA 253 (455)
T ss_pred HHHHHHHHHHHHHhhcCCCccccccCCCC---CCHHHHHHHhCCCC-CCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988777655 34 344433 45899999999995 678999999999999999999999999999999
Q ss_pred hhhhhhccCCCccccceecCCC-CCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHH-HHH
Q psy10160 388 NDIRFLASGPRCGLGELSLPEN-EPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVS-NVL 465 (558)
Q Consensus 388 ~d~~~~~s~~~~e~~e~~~~~~-~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 465 (558)
+||++|+| +|||.+++++. ++|||||||||||+.+|+++++++++.|++++++...++.++ .+.++.+.| ..+
T Consensus 254 ~Dl~l~ss---~e~g~~el~~~~~~gSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~~~--~~~rd~~~~~~~l 328 (455)
T PRK04833 254 EDLIFFNS---GEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMLMTLKGLPL--AYNKDMQEDKEGL 328 (455)
T ss_pred HHHHHHhC---CCCCceeeCCCCCCCcccCCCCCCChHHHHHHHHHHHHHhhHHHHHHHHhCChH--HHhhhhhhhHHHH
Confidence 99999997 79998887764 799999999999999999999999999999998866665333 333333321 234
Q ss_pred HHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhccc-----ccChHHHHHHHH----HHHHcCCCHHHHHHH
Q psy10160 466 RSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNP-----HIGYDKAAKIAK----TAHKEGTTLKVAALK 536 (558)
Q Consensus 466 ~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~-----~l~~~~a~~~~~----~a~~~~~~~~~~~~~ 536 (558)
+++......++.++..++++|+||++||++++..++.+++++|+ .++|++||++|. .+.++|.++.++..+
T Consensus 329 ~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~g~~~a~~~a~~L~~~g~~~r~Ah~~v~~~~~~a~~~~~~~~~~~~~ 408 (455)
T PRK04833 329 FDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHhhCeECHHHHHHHHHccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCChhhcCHH
Confidence 44555555577888899999999999999999999988888874 479999998654 677788888886543
Q ss_pred c----CCCCHHHHhhhcCccccc
Q psy10160 537 L----GYLTEEEFNKWVVPEDML 555 (558)
Q Consensus 537 ~----~~l~~~~~~~~~~p~~~~ 555 (558)
. ..+.++++.+++||+.++
T Consensus 409 ~~~~~~~~~~~~~~~~l~p~~~v 431 (455)
T PRK04833 409 ELQKFSSVIGDDVYPILSLQSCL 431 (455)
T ss_pred HHHHhcccchHHHHHhCCHHHHH
Confidence 2 334577799999999876
|
|
| >PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-47 Score=405.02 Aligned_cols=308 Identities=15% Similarity=0.145 Sum_probs=249.4
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|+|.+.+|++.++.. ...+..+..+...+.. ...+ ++++|.||||+|+|+|+|+|||+++ |++.|.
T Consensus 100 ~~~iH~g~S~nD~~~Ta~~-L~~r~~~~~l~~~l~~l~~~l~~~a~~~~~t~m~grTH~Q~A~P~T~G~~~~~-~~~~l~ 177 (614)
T PRK12308 100 GKKLHTGRSRNDQVATDLK-LWCRQQGQQLLLALDQLQQQMVNVAERHQGTVLPGYTHLQRAQPVTFAHWCLA-YVEMFE 177 (614)
T ss_pred ccceecCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcCCcccEEecHHHHHHH-HHHHHH
Confidence 6889999999999988876 4445554444433332 2223 7899999999999999999999998 999999
Q ss_pred chHHHHHhHhhhhhhhc-CCCCChhHH-HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhhhh
Q psy10160 313 PNDRQALNIVSIFYFTY-LVKLSELLE-TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDI 390 (558)
Q Consensus 313 ~~~~~l~~~~~~~~~~g-~~g~~~~~~-~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~d~ 390 (558)
|+++||.+++.+++.++ +.|+.+|.+ +.+++++|+.|||+ .+..|++||+++||+++|++++|++++++|+|||+||
T Consensus 178 r~~~rL~~~~~~~~~~plGgga~agt~~~~~r~~~a~~LG~~-~~~~n~~da~~~rd~~~e~~~~l~~~~~~l~ria~Dl 256 (614)
T PRK12308 178 RDYSRLEDALTRLDTCPLGSGALAGTAYPIDREALAHNLGFR-RATRNSLDSVSDRDHVMELMSVASISMLHLSRLAEDL 256 (614)
T ss_pred HHHHHHHHHHHHHhhCCchhccccCCCCCCCHHHHHHHhCCC-CCcCCHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887766653 225554544 57899999999998 5678999999999999999999999999999999999
Q ss_pred hhhccCCCccccceecCCC-CCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccc--cccccchhhHHHHHHHH
Q psy10160 391 RFLASGPRCGLGELSLPEN-EPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGH--FELNVFKPLIVSNVLRS 467 (558)
Q Consensus 391 ~~~~s~~~~e~~e~~~~~~-~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 467 (558)
++|+| +|||++++++. ++|||||||||||+.+|+++++++++.|++++++....+.+ ++++...| |..+++
T Consensus 257 ~~~ss---~e~g~~el~~~~~~gSSiMPqK~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~rd~~~~---~~~l~~ 330 (614)
T PRK12308 257 IFYNS---GESGFIELADTVTSGSSLMPQKKNPDALELIRGKTGRVYGALAGMMMTVKALPLAYNKDMQED---KEGLFD 330 (614)
T ss_pred HHHhC---CCcCCEEeCccCCCccccCcCccCCcHHHHHHHHHHHHhhHHHHHHHHHcCCchhhccchhhh---HHHHHH
Confidence 99997 79997777764 69999999999999999999999999999999876555433 33443333 566777
Q ss_pred HHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhccc-----ccChHHHHHHHH----HHHHcCCCHHHHHHHc-
Q psy10160 468 IRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNP-----HIGYDKAAKIAK----TAHKEGTTLKVAALKL- 537 (558)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~-----~l~~~~a~~~~~----~a~~~~~~~~~~~~~~- 537 (558)
+..+...++.++..++++|+||++||++++..+++++++|++ .+||++||++|. .+.++|+++.+++.+.
T Consensus 331 ~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~g~~~a~~la~~L~~~g~~~r~Ah~~v~~~v~~a~~~g~~l~~~~~~~~ 410 (614)
T PRK12308 331 ALDTWNDCMEMAALCFDGIKVNGERTLEAAKQGYANATELADYLVAKGIPFREAHHIVGVAVVGAIAKGCALEELSLEQL 410 (614)
T ss_pred HHHHHHHHHHHHHHHhCcCEECHHHHHHHHHcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCChhhCCHHHH
Confidence 777777777899999999999999999999999888888874 479999998654 5778899998876543
Q ss_pred ----CCCCH-----HHHhhhcCcccccCC
Q psy10160 538 ----GYLTE-----EEFNKWVVPEDMLGP 557 (558)
Q Consensus 538 ----~~l~~-----~~~~~~~~p~~~~~~ 557 (558)
..+++ .+++.+++|+.++|.
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 439 (614)
T PRK12308 411 KEFSDVIEDDVYQILTIESCLEKRCALGG 439 (614)
T ss_pred HHhhhhhhHHHHHhCCHHHHHHhccCCCC
Confidence 34555 346677788888774
|
|
| >cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=376.25 Aligned_cols=304 Identities=16% Similarity=0.104 Sum_probs=245.1
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcc-cccchhhh-------hhhhh-hhhhhcccccchhhhhhhHHHhhcccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYG-PHIKRAVE-------AEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNL 311 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~-~w~~~~l~-------~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l 311 (558)
+.++|+|.+++|+.+++.. ...+... ..+...+. ....+ ++++|.||||+|+|+|+||||++++ |++.|
T Consensus 92 ~~~vH~G~TsnDi~dTa~~-L~lr~~l~~~l~~~L~~l~~~L~~lA~~~~dt~m~GrTH~Q~A~P~TfG~~~a~-w~~~L 169 (425)
T cd01598 92 KEFIHFACTSEDINNLAYA-LMIKEARNEVILPLLKEIIDSLKKLAKEYADVPMLSRTHGQPATPTTLGKELAV-FVYRL 169 (425)
T ss_pred hhHhccCCChhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeecccCCccCeehhHHHHHHH-HHHHH
Confidence 5689999999999999976 4455444 23322222 22233 7899999999999999999999998 99999
Q ss_pred cchHHHHHhHhhhhhhhcCCCCChhH--------HHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHH
Q psy10160 312 DPNDRQALNIVSIFYFTYLVKLSELL--------ETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSL 383 (558)
Q Consensus 312 ~~~~~~l~~~~~~~~~~g~~g~~~~~--------~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l 383 (558)
.|+++||+++...++++|++|+.+.+ +..+++++++.|||..++.+| ++++||+++|++++|++++++|
T Consensus 170 ~r~~~RL~~~~~~g~~gGavGt~~~~~~~~~~~~~~~~~~~~a~~LgL~~~~~~~---~v~~rD~~~e~~~~La~la~~L 246 (425)
T cd01598 170 ERQYKQLKQIEILGKFNGAVGNFNAHLVAYPDVDWRKFSEFFVTSLGLTWNPYTT---QIEPHDYIAELFDALARINTIL 246 (425)
T ss_pred HHHHHHHHHHHHhheeeCchhhhhhhhhccCcccHHHHHHHHHHHhCcCCCCccc---chhccHHHHHHHHHHHHHHHHH
Confidence 99999999998889999999988755 257889999999999777776 4799999999999999999999
Q ss_pred HHHhhhhhhhccCCCccccceecC--CCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHH
Q psy10160 384 MKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIV 461 (558)
Q Consensus 384 ~k~a~d~~~~~s~~~~e~~e~~~~--~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (558)
+|||+||++|+| + ||+.++ ++++|||||||||||+.+|+++++++.+.+....++..+...+++++...|..+
T Consensus 247 ~kia~Di~ll~s---~--ge~~e~~~~~~~GSS~MPhKrNPv~~E~i~~~a~~a~~~~~~~~~~~~~~~~eRD~~~~~~e 321 (425)
T cd01598 247 IDLCRDIWGYIS---L--GYFKQKVKKGEVGSSTMPHKVNPIDFENAEGNLGLSNALLNHLSAKLPISRLQRDLTDSTVL 321 (425)
T ss_pred HHHHHHHHHHhC---C--cceeecCCCCCCCcCCCCCCcCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccchhhh
Confidence 999999999997 4 455543 478999999999999999999999999988887776444357799999999889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhh-----hcccccChHHHHHHHHHHHH-cCCCHHH---
Q psy10160 462 SNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVT-----ALNPHIGYDKAAKIAKTAHK-EGTTLKV--- 532 (558)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~-----~la~~l~~~~a~~~~~~a~~-~~~~~~~--- 532 (558)
|.+ +++..+...++..+..++++|+||++||++|++.++.+++ .|++ +|+++||++|.++.. ...+..+
T Consensus 322 ~~~-~~~~~~~~~al~~~~~ll~~L~v~~~rm~~nl~~~~~i~sE~~~~~l~~-~gr~~Ah~~V~~~~~~~~~~~~~~~~ 399 (425)
T cd01598 322 RNI-GVAFGHSLIAYKSLLRGLDKLELNEARLLEDLDANWEVLAEPIQTVMRR-YGIPNPYEKLKDLTRGKRIDKETLKE 399 (425)
T ss_pred ccH-HHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcCHHHHHHHHHHHh-cChHhHHHHHHHHhCCCCCCHHHHHH
Confidence 988 8888888889999999999999999999999976665443 4455 899999999987654 3333333
Q ss_pred HHHHcCCCCHHHHhh--hcCcccccCC
Q psy10160 533 AALKLGYLTEEEFNK--WVVPEDMLGP 557 (558)
Q Consensus 533 ~~~~~~~l~~~~~~~--~~~p~~~~~~ 557 (558)
+..+.. .+++.-++ .|.|.+|+|.
T Consensus 400 ~~~~~~-~~~~~~~~~~~~~~~~~~~~ 425 (425)
T cd01598 400 FIDSLD-IPEEAKAELLALTPANYIGL 425 (425)
T ss_pred HHHhCC-CCHHHHHHHHhCCccccCCc
Confidence 333332 44443333 4589999984
|
This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). |
| >KOG1316|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=343.64 Aligned_cols=267 Identities=21% Similarity=0.195 Sum_probs=233.9
Q ss_pred hhhhhhhcccccchhhhhhhHHHhhcccccccccchHHHHHhHhhhhhhhc-CCCCChhHH-HHHHHHHHhHhCCCcccC
Q psy10160 279 AAADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDPNDRQALNIVSIFYFTY-LVKLSELLE-TKCAAKIAELTGLPFKSA 356 (558)
Q Consensus 279 ~~~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~g-~~g~~~~~~-~~~~~~~a~~lg~~~~~~ 356 (558)
.+.+++|+|+||+|.|||+.+.||+.+ |+..|.||+.||.+++.++|+.| ++|+.+|.+ .++|+.+++.|||. .++
T Consensus 149 ~~~dvlmpGYTHLQRAQpvrwsH~LlS-ha~~l~~D~~Rl~q~~~R~n~~PLGagALAGnpl~iDR~~la~~LgF~-~v~ 226 (464)
T KOG1316|consen 149 AELDVLMPGYTHLQRAQPVRWSHWLLS-HAEQLTRDLGRLVQIRKRLNQLPLGAGALAGNPLGIDREFLAEELGFE-GVI 226 (464)
T ss_pred hccCeeccChhhhhhccCchhHHHHHH-HHHHHHhHHHHHHHHHHHhccCCcccchhcCCCCCccHHHHHHhcCCc-ccc
Confidence 337899999999999999999999997 99999999999999999999997 577777765 48999999999999 789
Q ss_pred CChhHHhhcCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCccccceecCCC-CCCCCCCCCCCCchHHHHHHHHHHHH
Q psy10160 357 PNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPEN-EPGSSIMPGKVNPTQCEALTMVAAQV 435 (558)
Q Consensus 357 ~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~d~~~~~s~~~~e~~e~~~~~~-~~gSS~MP~K~NP~~~e~~~~~~~~~ 435 (558)
-||+||++.||+++|+..+.++++.+|+|+|+|+.+|+| .|||++.+.+. .+|||+||||+||+.+|.+|+.+++|
T Consensus 227 ~NSm~AvsDRDFVvef~fw~sm~m~HlSRlaEdlIiy~t---~EF~Fv~lSDaySTGSSlMPQKKNpDslELlRgksgrV 303 (464)
T KOG1316|consen 227 MNSMDAVSDRDFVVEFLFWASMVMTHLSRLAEDLIIYST---KEFGFVTLSDAYSTGSSLMPQKKNPDSLELLRGKSGRV 303 (464)
T ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHHHhhHhheeec---cccCceeeccccccCcccCCCCCCCCHHHHhcccccee
Confidence 999999999999999999999999999999999999998 99999999986 79999999999999999999999999
Q ss_pred HcccHHHHhhccccccccccchhh--HHHHHHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhccccc--
Q psy10160 436 MGNHVAVTIGGSNGHFELNVFKPL--IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHI-- 511 (558)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l-- 511 (558)
.|.+.+++...++ ++..|+.++ ++..+|++...+.+.+...+ .++.+|+||+|+|++.|... |+||+||++|
T Consensus 304 ~gdl~g~lmt~KG--~PstYnkDlQeDKep~Fds~~tv~~~l~v~t-gv~stltvn~e~m~~aLt~d-mlATdlA~YLVr 379 (464)
T KOG1316|consen 304 FGDLTGLLMTLKG--LPSTYNKDLQEDKEPLFDSSKTVSDSLQVAT-GVISTLTVNQENMEKALTPD-MLATDLAYYLVR 379 (464)
T ss_pred hhhhHHHHHHhcC--CccccccchhhhhhHHHhhHHHHHHHHHHHH-HHhhheeECHHHHhhccCch-hhHhHHHHHHHH
Confidence 9999999999998 566666666 46789999999988886554 59999999999999999985 7899999775
Q ss_pred ---ChHHHHHH----HHHHHHcCCCHHHHHHH----cCCCCHHHHhhhcCcccc
Q psy10160 512 ---GYDKAAKI----AKTAHKEGTTLKVAALK----LGYLTEEEFNKWVVPEDM 554 (558)
Q Consensus 512 ---~~~~a~~~----~~~a~~~~~~~~~~~~~----~~~l~~~~~~~~~~p~~~ 554 (558)
+|+++|++ |..|.+.|.++.++..+ ...+-++|+-..+|-++-
T Consensus 380 KGvPFRqtHhisG~~V~~ae~rg~~l~~LsledlqklsplF~eDv~~v~~ye~s 433 (464)
T KOG1316|consen 380 KGVPFRQTHHISGKAVRMAEERGVTLDKLSLEDLQKLSPLFEEDVFCVFNYENS 433 (464)
T ss_pred cCCCchhhhhhhHHHHHHHHHcCCCcccCCHHHHhhcCcccccchHHhhchhhh
Confidence 99999985 56777888887665443 234555666666665543
|
|
| >PRK02186 argininosuccinate lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-46 Score=412.32 Aligned_cols=290 Identities=18% Similarity=0.161 Sum_probs=246.5
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhhhh-------hhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAE-------AAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~-------~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|.|.+.+|+..++.. ...+..+..+...+... ..+ ++++|.||||+|+|+|+|+|||+++ |+++|.
T Consensus 507 ~~~lH~grSrnD~v~T~~~-l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~g~TH~Q~A~P~T~G~~~~~-~~~~l~ 584 (887)
T PRK02186 507 GGVLQTARSRNDINATTTK-LHLREATSRAFDALWRLRRALVFKASANVDCALPIYSQYQPALPGSLGHYLLA-VDGALA 584 (887)
T ss_pred hcccCccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEeecCccCCccccccHHHHHHH-HHHHHH
Confidence 5778999988888888766 45555544444433322 222 7899999999999999999999998 999999
Q ss_pred chHHHHHhHhhhh---hhhcCCCCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhhh
Q psy10160 313 PNDRQALNIVSIF---YFTYLVKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAND 389 (558)
Q Consensus 313 ~~~~~l~~~~~~~---~~~g~~g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~d 389 (558)
|+++||.+++.++ .++|++|++++++ .+++++|++|||+ .+..|++||+++||+++|++++|++++++|+|||+|
T Consensus 585 r~~~rl~~~~~r~~~~plG~aag~gt~~~-~~~~~~a~~LGf~-~~~~n~~da~~~rd~~~e~~~~l~~~~~~l~ria~D 662 (887)
T PRK02186 585 RETHALFALFEHIDVCPLGAGAGGGTTFP-IDPEFVARLLGFE-QPAPNSLDAVASRDGVLHFLSAMAAISTVLSRLAQD 662 (887)
T ss_pred HHHHHHHHHHHHhCcCCcccccccCCCCC-CCHHHHHHHcCCC-CCccCHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887666 4556788888875 5789999999999 677899999999999999999999999999999999
Q ss_pred hhhhccCCCccccceecCCC-CCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHHH
Q psy10160 390 IRFLASGPRCGLGELSLPEN-EPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSI 468 (558)
Q Consensus 390 ~~~~~s~~~~e~~e~~~~~~-~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (558)
|++|+| +||||+.+|+. ++|||||||||||+.+|+++++++++.|++.+++...++.+++++...+...|..++++
T Consensus 663 l~~~~~---~e~g~i~~~~~~~~gSSiMPqKrNP~~~E~ir~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 739 (887)
T PRK02186 663 LQLWTT---REFALVSLPDALTGGSSMLPQKKNPFLLEFVKGRAGVVAGALASASAALGKTPFSNSFEAGSPMNGPIAQA 739 (887)
T ss_pred HHHHhC---CCCCcEECCCccccccCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHccCCcccccchhhhhHHHHHHH
Confidence 999996 89999999984 79999999999999999999999999999999988888889998877665567777777
Q ss_pred HHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhccc------ccChHHHHHHH----HHHHHcCCCHHHHHHHc
Q psy10160 469 RLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNP------HIGYDKAAKIA----KTAHKEGTTLKVAALKL 537 (558)
Q Consensus 469 ~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~------~l~~~~a~~~~----~~a~~~~~~~~~~~~~~ 537 (558)
..+...++.++..++++|+||++||++++..++.+||+||+ .+||++||++| +.+.++|.++.+.+.+.
T Consensus 740 ~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~~~at~la~~L~~~~g~~fr~Ah~~v~~~v~~~~~~~~~~~~~~~~~ 818 (887)
T PRK02186 740 CAAIEDAAAVLVLLIDGLEADQARMRAHLEDGGVSATAVAESLVVRRSISFRSAHTQVGQAIRQSLDQGRSSADALAAL 818 (887)
T ss_pred HHHHHHHHHHHHHHHhhCEECHHHHHHHHhcCcchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCcccchHHHh
Confidence 77777777888899999999999999999998888888873 48999999865 45677887777766543
|
|
| >PLN02848 adenylosuccinate lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=371.42 Aligned_cols=304 Identities=16% Similarity=0.127 Sum_probs=248.3
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccc-cchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhcccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPH-IKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNL 311 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w-~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l 311 (558)
+.++|+|.+++|+.+++.. ...+..... +...+.. .... ++++|.||||+|+|+|+||||++++ |++.|
T Consensus 117 ~~~vH~G~TsqDi~dTa~~-L~lr~a~~~~l~~~L~~l~~aL~~lA~~~~dt~m~GRTH~Q~A~PiTfG~~~a~-w~~~L 194 (458)
T PLN02848 117 LEFFHFACTSEDINNLSHA-LMLKEGVNSVVLPTMDEIIKAISSLAHEFAYVPMLSRTHGQPASPTTLGKEMAN-FAYRL 194 (458)
T ss_pred hCcccCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccCccceeehHHHHHHH-HHHHH
Confidence 5789999999999999877 555555544 4433332 2233 7899999999999999999999998 99999
Q ss_pred cchHHHHHhHhhhhhhhcCCCCChhH----H----HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHH
Q psy10160 312 DPNDRQALNIVSIFYFTYLVKLSELL----E----TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSL 383 (558)
Q Consensus 312 ~~~~~~l~~~~~~~~~~g~~g~~~~~----~----~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l 383 (558)
.|+.+||.+....++++|++|+++++ + +.+.+.+++.|||...+.. +++++||+++|++++|++++++|
T Consensus 195 ~r~~~rL~~~~l~g~~~GAvGt~aa~~~~~~~~d~~~v~~~la~~LGL~~~~~~---~~v~~rD~~~e~~~~La~~a~~l 271 (458)
T PLN02848 195 SRQRKQLSEVKIKGKFAGAVGNYNAHMSAYPEVDWPAVAEEFVTSLGLTFNPYV---TQIEPHDYMAELFNAVSRFNNIL 271 (458)
T ss_pred HHHHHHHHHHHhccEeecccchhhhhhhccCCCCHHHHHHHHHHHhCCCCCCch---hhHhccHHHHHHHHHHHHHHHHH
Confidence 99999999988778999999998875 2 4678889999999853332 25799999999999999999999
Q ss_pred HHHhhhhhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHH
Q psy10160 384 MKIANDIRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIV 461 (558)
Q Consensus 384 ~k~a~d~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (558)
+|||+|++.|+ |+||+.++. +++|||||||||||+.+|+++++++.+.|.+..++.....+++|++...|..+
T Consensus 272 ~kia~Di~~~~-----e~ge~~e~~~~~~~GSS~MP~KrNPv~~E~i~~~a~~~~~~~~~~~~~~~~~~~eRD~~~s~~e 346 (458)
T PLN02848 272 IDFDRDIWSYI-----SLGYFKQITKAGEVGSSTMPHKVNPIDFENSEGNLGLANAELSHLSMKLPISRMQRDLTDSTVL 346 (458)
T ss_pred HHHHHHHHhhh-----hcCCcccccCCCCCCcCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHhcCcchhhccccchhhhh
Confidence 99999988776 577777653 68999999999999999999999999999999998665777899999999889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhh-----hhcccccChHHHHHHHHHHHH-cCC---CHHH
Q psy10160 462 SNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLV-----TALNPHIGYDKAAKIAKTAHK-EGT---TLKV 532 (558)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~-----~~la~~l~~~~a~~~~~~a~~-~~~---~~~~ 532 (558)
|.+ +++..+...++..+..++++|+||++||++|++.++.+. +.|++ +|+++||++++++.. +.. .+++
T Consensus 347 ~~~-~~~~~~~~~al~~~~~~l~~L~v~~~rm~~nl~~~~~~~sE~~~~~l~~-~G~~~A~e~v~~~~~~~~~~~~~~~~ 424 (458)
T PLN02848 347 RNM-GVGLGHSLLAYKSTLRGIGKLQVNEARLAEDLDQTWEVLAEPIQTVMRR-YGVPEPYEKLKELTRGRAVTKESMRE 424 (458)
T ss_pred ccH-HHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHccchhHHHHHHHHHHH-hChHHHHHHHHHHHHHccCCHHHHHH
Confidence 998 888888888889999999999999999999987665433 34556 899999999987653 222 2333
Q ss_pred HHHHcCCCCHHHHhhh--cCcccccCC
Q psy10160 533 AALKLGYLTEEEFNKW--VVPEDMLGP 557 (558)
Q Consensus 533 ~~~~~~~l~~~~~~~~--~~p~~~~~~ 557 (558)
+..... ++++..+++ |.|.+|+|.
T Consensus 425 ~~~~~~-~~~~~~~~l~~~~~~~y~g~ 450 (458)
T PLN02848 425 FIEGLE-LPEEAKDQLLKLTPHTYIGA 450 (458)
T ss_pred HHHHcC-CCHHHHHHHHhCCchhhhch
Confidence 333333 676666655 489999985
|
|
| >PRK06389 argininosuccinate lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=339.27 Aligned_cols=239 Identities=15% Similarity=0.102 Sum_probs=198.3
Q ss_pred hhhhhcccccchhhhhhhHHHhhcccccccccchHHHHHhHhhhhhhhcCCCCChhHH---HHHHHHHHhHhCCCcccCC
Q psy10160 281 ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDPNDRQALNIVSIFYFTYLVKLSELLE---TKCAAKIAELTGLPFKSAP 357 (558)
Q Consensus 281 ~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~g~~g~~~~~~---~~~~~~~a~~lg~~~~~~~ 357 (558)
.+++|+||||+|+|+|+|+|||+++ |++.|.|+++||.+++.+++.++ .|+.++.| +.+++++|++|||+. +..
T Consensus 141 ~dtimpGyTHlQ~AqP~TfG~~l~a-~a~~L~rd~~RL~~~~~r~~~~p-LGaga~~Gt~~~idr~~~A~lLGf~~-~~~ 217 (434)
T PRK06389 141 LKGRLPGYTHFRQAMPMTVNTYINY-IKSILYHHINNLDSFLMDLREMP-YGYGSGYGSPSSVKFNQMSELLGMEK-NIK 217 (434)
T ss_pred cCceeccccccCcCcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcc-hhhhhhhcCCchhhHHHHHHHhCCCC-CCC
Confidence 7899999999999999999999998 99999999999999998888873 32222222 368999999999994 667
Q ss_pred ChhHHhhcCcH-HHHHHHHHHHHHHHHHHHhhhhhhhccCCCccccceecCCC-CCCCCCCCCCCCchHHHHHHHHHHHH
Q psy10160 358 NKFEALAAHDA-LVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPEN-EPGSSIMPGKVNPTQCEALTMVAAQV 435 (558)
Q Consensus 358 ~~~~~~~~~d~-~~~~~~~l~~~~~~l~k~a~d~~~~~s~~~~e~~e~~~~~~-~~gSS~MP~K~NP~~~e~~~~~~~~~ 435 (558)
|++++..++|+ ++|+++++++++.+|+|||+|+++|+| . |++++|+. ++|||||||||||+.+|.+++.++++
T Consensus 218 n~~~a~~~~~~~~~e~~~~la~la~~LsRiA~Dl~l~ss---~--g~ielpd~~~~GSSiMPqKrNP~~~E~ir~~a~~v 292 (434)
T PRK06389 218 NPVYSSSLYIKTIENISYLISSLAVDLSRICQDIIIYYE---N--GIITIPDEFTTGSSLMPNKRNPDYLELFQGIAAES 292 (434)
T ss_pred CCchhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHcC---C--CEEEecCCCCCCCCCCCCCcCcHHHHHHHHHHHHH
Confidence 88887667655 889999999999999999999999997 3 78888875 79999999999999999999999999
Q ss_pred HcccHHHHhhccccccccccchhhH--HHHHHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccc---
Q psy10160 436 MGNHVAVTIGGSNGHFELNVFKPLI--VSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPH--- 510 (558)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~--- 510 (558)
.|.++++....++. +.+++.+.+ ...+++.+..+..++ .++..++++++||++| ++.++.. .+||+||+.
T Consensus 293 ~g~~~~~~~~~~n~--~~~y~~D~q~~~~~~~~~~~~~~~~l-~l~~~~i~~l~~~~~~-~~a~~~~-~~ATdlA~~lv~ 367 (434)
T PRK06389 293 ISVLSFIAQSELNK--TTGYHRDFQIVKDSTISFINNFERIL-LGLPDLLYNIKFEITN-EKNIKNS-VYATYNAWLAFK 367 (434)
T ss_pred HHHHHHHHHHHcCC--cchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCeECHHH-HhhccCC-CcHHHHHHHHHH
Confidence 99999998777764 445555554 566777777776665 4566799999999999 5555444 458999854
Q ss_pred --cChHHHHHHHHHHHHcCCCHHH
Q psy10160 511 --IGYDKAAKIAKTAHKEGTTLKV 532 (558)
Q Consensus 511 --l~~~~a~~~~~~a~~~~~~~~~ 532 (558)
++||+||++|..+..+++-+.+
T Consensus 368 ~GipFR~AH~~Vg~~V~~~~~~~~ 391 (434)
T PRK06389 368 NGMDWKSAYAYIGNKIREGEVLDE 391 (434)
T ss_pred cCCCHHHHHHHHHHHHHhccchhh
Confidence 5999999999988887765433
|
|
| >PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=342.24 Aligned_cols=235 Identities=17% Similarity=0.114 Sum_probs=207.1
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|+|.+++|+.+++.. ...+.....+...+.. ...+ ++++|.||||+|+|+|+||||++++ |++.|.
T Consensus 99 ~~~vH~G~TsnDi~dTa~~-L~lr~~l~~l~~~L~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~TfG~~~a~-~~~~l~ 176 (351)
T PRK05975 99 AAHVHFGATSQDVIDTSLM-LRLKAASEILAARLGALIARLDALEATFGQNALMGHTRMQAAIPITVADRLAS-WRAPLL 176 (351)
T ss_pred hCcccCCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecccCCCcCeehhHHHHHHH-HHHHHH
Confidence 6789999999999998877 5555555444444333 2223 7899999999999999999999998 999999
Q ss_pred chHHHHHhHh---hhhhhhcCCCCChhHH---HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHH
Q psy10160 313 PNDRQALNIV---SIFYFTYLVKLSELLE---TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKI 386 (558)
Q Consensus 313 ~~~~~l~~~~---~~~~~~g~~g~~~~~~---~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~ 386 (558)
|+++||.+.+ ..++++|++|++++++ +.+++++|+.|||+.++ + |+++||+++|++++|++++++|+||
T Consensus 177 r~~~rL~~~~~~~~~~~lGGAvGt~~~~~~~~~~~~~~~a~~LGl~~~~-~----~~~~rD~~~e~~~~la~la~~l~ki 251 (351)
T PRK05975 177 RHRDRLEALRADVFPLQFGGAAGTLEKLGGKAAAVRARLAKRLGLEDAP-Q----WHSQRDFIADFAHLLSLVTGSLGKF 251 (351)
T ss_pred HHHHHHHHHHHHhhhcCCccHhccCccCCCcHHHHHHHHHHHhCcCCCc-c----hhhccHHHHHHHHHHHHHHHHHHHH
Confidence 9999998776 6678888999987664 68999999999998543 3 5899999999999999999999999
Q ss_pred hhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHH
Q psy10160 387 ANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLR 466 (558)
Q Consensus 387 a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (558)
|+||++|+| +| ||+.+|. ++|||||||||||+.+|+++++++.+.+++..+. ..+..++|++...|..+|..+|
T Consensus 252 A~Di~ll~s---~e-gev~~~~-~~GSS~MPhKrNPv~~E~i~~~ar~~~~~~~~~~-~~~~~~~er~~~~~~~e~~~lp 325 (351)
T PRK05975 252 GQDIALMAQ---AG-DEISLSG-GGGSSAMPHKQNPVAAETLVTLARFNATQVSGLH-QALVHEQERSGAAWTLEWMILP 325 (351)
T ss_pred HHHHHHHhC---CC-CcccCCC-CCccCCCCCCcCcHHHHHHHHHHHHHHHHHHHHH-hcccchhccCCchHHHHHHHHH
Confidence 999999996 89 9999997 6999999999999999999999999999988775 5567889999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCccc
Q psy10160 467 SIRLIADSATAFTDKCVSGIVA 488 (558)
Q Consensus 467 ~~~~~~~~~~~~~~~~l~~l~v 488 (558)
+++.+.++++..+..++++|++
T Consensus 326 ~~~~~~~~~l~~~~~ll~~l~~ 347 (351)
T PRK05975 326 QMVAATGAALRLALELAGNIRR 347 (351)
T ss_pred HHHHHHHHHHHHHHHHHhhhHh
Confidence 9999999999999999999975
|
|
| >TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=339.60 Aligned_cols=235 Identities=22% Similarity=0.161 Sum_probs=202.4
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|.|.+.+|+..++.. ...+..+..+...+.. ...+ ++++|.||||+|+|+|+|+|||+++ |++.|.
T Consensus 90 g~~vH~G~S~nD~~~Ta~~-L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~~~m~grTH~Q~A~P~T~G~~l~~-~~~~l~ 167 (338)
T TIGR02426 90 ARYVHRGATSQDVIDTSLM-LQLRDALDLLLADLGRLADALADLAARHRDTPMTGRTLLQQAVPTTFGLKAAG-WLAAVL 167 (338)
T ss_pred cCcccCCCChhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceecccCCCcCeehhHHHHHHH-HHHHHH
Confidence 5788999999999988865 4444444333333222 2233 7899999999999999999999998 999999
Q ss_pred chHHHHHhHh---hhhhhhcCCCCChhHH---HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHH
Q psy10160 313 PNDRQALNIV---SIFYFTYLVKLSELLE---TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKI 386 (558)
Q Consensus 313 ~~~~~l~~~~---~~~~~~g~~g~~~~~~---~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~ 386 (558)
|+++||..++ ..++++|++|++++++ ..+++++++.|||+.+... ++++||+++|++++|++++++|+||
T Consensus 168 r~~~rL~~~~~~~~~~~lGgavGtg~~~~~~~~~v~~~~a~~LGl~~~~~~----~~~~rd~~~e~~~~l~~la~~l~ri 243 (338)
T TIGR02426 168 RARDRLAALRTRALPLQFGGAAGTLAALGTRGGAVAAALAARLGLPLPALP----WHTQRDRIAEFGSALALVAGALGKI 243 (338)
T ss_pred HHHHHHHHHHHHhHhcCCcchhccCCCccchHHHHHHHHHHHhCcCCCCCc----chhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999998776 4556677888887753 4679999999999965444 4899999999999999999999999
Q ss_pred hhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHH
Q psy10160 387 ANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLR 466 (558)
Q Consensus 387 a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (558)
|+||++|++ +||||+.++ .++|||||||||||+.+|+++++++.+.|+...++ ..+..++|++...|..+|.++|
T Consensus 244 a~Dl~l~s~---~e~gei~~~-~~~GSSiMPqK~NP~~~E~i~~~a~~~~g~~~~~~-~~~~~~~Er~~~~~~~e~~~lp 318 (338)
T TIGR02426 244 AGDIALLSQ---TEVGEVFEA-GGGGSSAMPHKRNPVGAALLAAAARRVPGLAATLH-AALPQEHERSLGGWHAEWETLP 318 (338)
T ss_pred HHHHHHHhc---CCCChhhhC-CCCCcccCCCCCCcHHHHHHHHHHHHHHHHHHHHH-HhchHhhccCCCchHHHHHHHH
Confidence 999999995 999999984 46999999999999999999999999999998886 5577899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCc
Q psy10160 467 SIRLIADSATAFTDKCVSGI 486 (558)
Q Consensus 467 ~~~~~~~~~~~~~~~~l~~l 486 (558)
+++.+.++++..+.+++++|
T Consensus 319 ~~~~~~~~~l~~~~~~l~~l 338 (338)
T TIGR02426 319 ELVRLTGGALRQAQVLAEGL 338 (338)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999875
|
Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. |
| >cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=337.83 Aligned_cols=242 Identities=28% Similarity=0.336 Sum_probs=205.8
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|+|.+.+|+.+++.. ...+..+.-+...+.. ...+ ++++|.||||+|+|+|+|||||+++ |++.|.
T Consensus 71 ~~~lH~G~S~nDi~~ta~~-l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~T~G~~~~~-~~~~l~ 148 (325)
T cd01334 71 GGYVHTGRSSNDIVDTALR-LALRDALDILLPALKALIDALAAKAEEHKDTVMPGRTHLQDAQPTTLGHELAA-WAAELE 148 (325)
T ss_pred CCCCccCCCCccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEeecccccccCccccHHHHHHH-HHHHHH
Confidence 6789999999999888766 4444444333332222 2233 8899999999999999999999998 999999
Q ss_pred chHHHHHhHhhhhhh---h-cCCCCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhh
Q psy10160 313 PNDRQALNIVSIFYF---T-YLVKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAN 388 (558)
Q Consensus 313 ~~~~~l~~~~~~~~~---~-g~~g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~ 388 (558)
|+++||.+.+.+++. + |++|+.+..++.+++++|+.|||. .+..|++|++++||+++|+++++++++++|+|||+
T Consensus 149 r~~~rL~~~~~~~~~~~lG~gA~g~~~~~~~~~~~~~a~~LG~~-~~~~~~~~a~~~rd~~~e~~~~l~~~~~~l~ria~ 227 (325)
T cd01334 149 RDLERLEEALKRLNVLPLGGGAVGTGANAPPIDRERVAELLGFF-GPAPNSTQAVSDRDFLVELLSALALLAVSLSKIAN 227 (325)
T ss_pred HHHHHHHHHHHHhhhcCCcHhHHhCcCCCCcchHHHHHHHhcCc-CcCcCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988876655 4 466666665678999999999995 47789999999999999999999999999999999
Q ss_pred hhhhhccCCCccccceecCCC-CCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHH
Q psy10160 389 DIRFLASGPRCGLGELSLPEN-EPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRS 467 (558)
Q Consensus 389 d~~~~~s~~~~e~~e~~~~~~-~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (558)
|+++|+| +||||+.+|+. ++|||||||||||+.+|+++++++++.|....++....+.+++ +...+..+|..+++
T Consensus 228 Dl~~~~~---~e~gev~~~~~~~~gSS~MP~KrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ 303 (325)
T cd01334 228 DLRLLSS---GEFGEVELPDAKQPGSSIMPQKVNPVILELVRGLAGRVIGNLAALLEALKGGPLE-DNVDSPVEREALPD 303 (325)
T ss_pred HHHHHcC---CCCCeEECCCCCCCCcccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHHhcCchh-hhcccHHHHHHHHH
Confidence 9999996 89999999986 8999999999999999999999999999999998777765555 55566667888888
Q ss_pred HHHHHHHHHHHHHhhhcCcccC
Q psy10160 468 IRLIADSATAFTDKCVSGIVAN 489 (558)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~l~v~ 489 (558)
+..+...++..+..++++|+||
T Consensus 304 ~~~~~~~~l~~~~~~~~~l~v~ 325 (325)
T cd01334 304 SFDLLDAALRLLTGVLEGLEVN 325 (325)
T ss_pred HHHHHHHHHHHHHHHhCcCEeC
Confidence 8888888888888899999987
|
The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. |
| >KOG2700|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=277.82 Aligned_cols=304 Identities=18% Similarity=0.119 Sum_probs=253.6
Q ss_pred eeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhcccccccccch
Q psy10160 243 YCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDPN 314 (558)
Q Consensus 243 ~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~~~ 314 (558)
.+|.|++..++.+.... -..+.....++..+.. .... +++++.|+||+|+|+++|+|+..+- |..+|.++
T Consensus 102 iihlgatsc~vtdnadl-i~~rd~~k~i~~~l~~vIdrls~~~~~~k~~~~~g~Th~q~A~l~tfgkr~~~-~~qel~~~ 179 (481)
T KOG2700|consen 102 IIHLGATSCFVTDNADL-IELRDASKLILPYLAGVIDRLSQFADKYKEKPTLGRTHLQPAQLTTFGKRMCL-WIQELLRD 179 (481)
T ss_pred eEEeeeeeeeecCCccc-eechhHHHHHHHHHHHHHHHHHHHHHHhccceecccccCccchhhHHHHHHHH-HHHHHHHH
Confidence 78888888888887766 4555555555544443 2233 7899999999999999999999996 99999999
Q ss_pred HHHHHhHhhhh---hhhcCCCCChhHHH----------HHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHH
Q psy10160 315 DRQALNIVSIF---YFTYLVKLSELLET----------KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAV 381 (558)
Q Consensus 315 ~~~l~~~~~~~---~~~g~~g~~~~~~~----------~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~ 381 (558)
++++..+...+ +++|+.|+.++|-. +..+.+++.+||......| +++.+||..++++..|+++++
T Consensus 180 l~~f~~~~~~~~~~~~kga~gtqasf~~l~~~~~~kv~~ld~Lv~k~~gf~~~~~~T--GQt~sr~~~~~~~~~la~lga 257 (481)
T KOG2700|consen 180 LERFHRARTDVRFRGLKGATGTQASFLSLFLGDMDKVEKLDSLVTKELGFVPMYIVT--GQTYSRKTDAEEVAPLASLGA 257 (481)
T ss_pred HHHHHHhhhhhhccccccchhhHHHHHHhhcccHHHHHHHHHHHHHHhCCCcccccc--CCcCCchhHHHHHHHHHHHHH
Confidence 99998666544 45678999998863 3446888999999776666 679999999999999999999
Q ss_pred HHHHHhhhhhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhh
Q psy10160 382 SLMKIANDIRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459 (558)
Q Consensus 382 ~l~k~a~d~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (558)
+..|+|.|+++++. |+|+.+|+ +|.|||+||+||||+.+|++.++++.+....+.++....-.|+|+....+.
T Consensus 258 t~~k~~Tdirll~~-----~~ev~epFea~q~gsSaMp~krNpm~~E~itslar~l~~~v~~al~~~~~qw~Ertl~dSa 332 (481)
T KOG2700|consen 258 TAHKYATDIRLLAK-----FAEVEEPFEAHQIGSSAMPYKRNPMRCERITSLARHLRPYVTQALNTASVQWHERTLDDSA 332 (481)
T ss_pred HHHHHHHHHHHHHH-----HHHhhccccccccccccCCCCCCCchhHHHhHHHHHHHHHHHHHhhhHHHHHhhccccccc
Confidence 99999999999993 99999996 699999999999999999999999999999999887677788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHh--------hhHhhhhhcccccC-hHHHHHHHH----HH---
Q psy10160 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLH--------ESLMLVTALNPHIG-YDKAAKIAK----TA--- 523 (558)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~--------~~~~~~~~la~~l~-~~~a~~~~~----~a--- 523 (558)
..|.++|+.+..+++.+.....++.+|.|.+++|+++++ ++.+ ++|++.++ |++||+.++ ++
T Consensus 333 ~~rivlP~~Fl~ad~~L~~~~ni~~gl~v~p~~i~r~i~~e~~~~~~eni~--mAL~~~g~srq~ahe~I~~L~~~a~~~ 410 (481)
T KOG2700|consen 333 NRRIVLPDAFLTADGNLGTLLNILEGLVVYPKVIERNIRDELPFMVLENII--MALVKAGLSRQEAHEGIRKLSHQAAQV 410 (481)
T ss_pred ccceechHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHhhhhHHHHHHHH--HHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999778899999999999999985 4544 47887765 999998543 23
Q ss_pred -HHcCCCHHHHHHH--c--CCCCHHHHhhhcCcccccCC
Q psy10160 524 -HKEGTTLKVAALK--L--GYLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 524 -~~~~~~~~~~~~~--~--~~l~~~~~~~~~~p~~~~~~ 557 (558)
..+|..+....+. . .....+|++.+|||.+|+|.
T Consensus 411 v~~e~g~~~~ie~~k~~~~~~~v~ee~~~ll~p~~f~gr 449 (481)
T KOG2700|consen 411 VKQEGGDNDLIERAKEDPTFKPVKEELDSLLDPLNFTGR 449 (481)
T ss_pred HHHhcCCcHHHHHhcccccccchHHHHHhhccchhcccc
Confidence 4567766555443 2 45778999999999999986
|
|
| >PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=297.39 Aligned_cols=193 Identities=25% Similarity=0.280 Sum_probs=157.3
Q ss_pred eceeeecccceeEEEEeccCCCCCCCcc-cccchhhh-------hhhhh-hhhhhcccccchhhhhhhHHHhhccccccc
Q psy10160 240 EGRYCQHHYYSQFCCESCTRAGQLPSYG-PHIKRAVE-------AEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVN 310 (558)
Q Consensus 240 ~~~~~~~g~~~~~~c~~~~~~g~~~~~~-~w~~~~l~-------~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~ 310 (558)
.+.++|+|.+++|+.+++.. ...+... ..+...+. ....+ ++++|.||||+|+|+|+|||+++++ |++.
T Consensus 101 ~~~~vH~G~Ts~Di~~Ta~~-l~lr~~~~~~l~~~l~~l~~~L~~~a~~~~~t~~~grTh~Q~A~P~T~G~~~a~-~~~~ 178 (312)
T PF00206_consen 101 AGGWVHYGRTSNDIVDTALR-LQLRDALLELLLERLKALIDALAELAEEHKDTPMPGRTHGQPAQPTTFGHKLAA-WADE 178 (312)
T ss_dssp GGGGTTTT--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEETTEEEEEEEHHHHHHH-HHHH
T ss_pred ccccccCCCcHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCceeccccccccccceeHHHHHHH-HHHH
Confidence 35788999999999888866 4444444 32332222 22233 8899999999999999999999998 9999
Q ss_pred ccchHHHHHhHh---hhhhhhcCCCCChhHH--HHHHHHHHhHhC-CCc--ccCCChhHHhhcCcHHHHHHHHHHHHHHH
Q psy10160 311 LDPNDRQALNIV---SIFYFTYLVKLSELLE--TKCAAKIAELTG-LPF--KSAPNKFEALAAHDALVEVSGALNTVAVS 382 (558)
Q Consensus 311 l~~~~~~l~~~~---~~~~~~g~~g~~~~~~--~~~~~~~a~~lg-~~~--~~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 382 (558)
|.|+++||++.. ....++|++|++++++ +.+.+++++.|| |.. .+..+.++|+++||++++++++|++++++
T Consensus 179 l~r~~~rL~~~~~~~~~~~lgga~g~gt~~~~~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~rd~~~e~~~~l~~l~~~ 258 (312)
T PF00206_consen 179 LARDLERLEEARKRLNVSPLGGAVGAGTSLGIDREFQERVAEELGEFTGLGVPAPNWHDAVSSRDRLAELASALALLAGT 258 (312)
T ss_dssp HHHHHHHHHHHHHHHHEEETTTTTTTSSHTTSHHHHHHHHHHHHHHHHCSTEECSSHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhHHHHHhccCCCccccccccCcchhhhHHhhhhhhhhcccchhhcccccccchHHHHHHHHHHHHHHH
Confidence 999999998776 5556677888888876 344457777777 431 36788999999999999999999999999
Q ss_pred HHHHhhhhhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHc
Q psy10160 383 LMKIANDIRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMG 437 (558)
Q Consensus 383 l~k~a~d~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~ 437 (558)
|+|||+||++|+| +|+||+++|+ +++|||||||||||+.+|+++++|++++|
T Consensus 259 l~kia~Dl~~~~s---~e~g~~~~~~~~~~~GSS~MP~K~NP~~~E~i~~~a~~v~G 312 (312)
T PF00206_consen 259 LSKIAEDLRLLSS---TEIGEVEEPFPEGQVGSSIMPHKRNPVILENIRGLARQVIG 312 (312)
T ss_dssp HHHHHHHHHHHTS---TTTSSEEEEGGGSSSCSSSSTTCEETHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CceeeeecccccccCCCccCCCCCCCHHHHHHHHhhhcCcC
Confidence 9999999999996 7899999885 57799999999999999999999999987
|
... |
| >PRK08937 adenylosuccinate lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=253.14 Aligned_cols=178 Identities=26% Similarity=0.261 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccc
Q psy10160 375 ALNTVAVSLMKIANDIRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFE 452 (558)
Q Consensus 375 ~l~~~~~~l~k~a~d~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (558)
+++.++++++|||+||++|+| +||||+.+|+ +++|||||||||||+.+|+++++++++.|++..++... .+++|
T Consensus 22 ~l~~i~~~l~ria~Dl~~~~s---~e~gei~~~~~~~~~gSSiMP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~-~~~~e 97 (216)
T PRK08937 22 VLALIATSLEKFANEIRLLQR---SEIREVEEPFAKGQKGSSAMPHKRNPIGSERITGLARVLRSYLVTALENV-PLWHE 97 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---cccceeecccccCCCCCccCCCccCcHHHHHHHHHHHHHHHHHHHHHHHh-HHHhc
Confidence 999999999999999999997 9999999995 68999999999999999999999999999999887666 78899
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhh--hHhhhhhcc-----cccChHHHHHHH----H
Q psy10160 453 LNVFKPLIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHE--SLMLVTALN-----PHIGYDKAAKIA----K 521 (558)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~--~~~~~~~la-----~~l~~~~a~~~~----~ 521 (558)
+|...|..+|..++++..+...++..+..++++|+||++||++++.. .+.+++.++ ..+||++||++| +
T Consensus 98 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~~~~~a~~l~~~L~~~g~~~~~Ah~~v~~~~~ 177 (216)
T PRK08937 98 RDLSHSSAERIALPDAFLALDYILNRFVNILENLVVFPENIERNLDKTLGFIATERVLLELVEKGMGREEAHELIREKAM 177 (216)
T ss_pred cCCchhHHHhhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHHhcChHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999998998888888888888899999999999999999999986 555555554 358999999854 4
Q ss_pred HHHHcCCCHHHHHHHc----CCCCHHHHhhhcCcccccC
Q psy10160 522 TAHKEGTTLKVAALKL----GYLTEEEFNKWVVPEDMLG 556 (558)
Q Consensus 522 ~a~~~~~~~~~~~~~~----~~l~~~~~~~~~~p~~~~~ 556 (558)
.+.++|+++.+.+.+. ..++++++++++||++|+|
T Consensus 178 ~~~~~g~~~~~~~~~~~~~~~~l~~~~l~~~ldp~~~vg 216 (216)
T PRK08937 178 EAWKNQKDLRELLEADERFTKQLTKEELDELFDPEAFVG 216 (216)
T ss_pred HHHHhCCCHHHHHHhChHhHhcCCHHHHHHHhCHHhhcC
Confidence 5677899999988875 3689999999999999987
|
|
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=236.74 Aligned_cols=284 Identities=20% Similarity=0.221 Sum_probs=207.3
Q ss_pred ceEecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCCCc-c-ccCceeEEeccCCCCCCcEEEEe
Q psy10160 8 NYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPNA-I-DYGTILSSAFPSESASPVVTQTT 84 (558)
Q Consensus 8 r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~~~-v-~~~~~~~~~~~~~~p~p~v~W~~ 84 (558)
++...+.+|.|.+++.+|+|.|+|.|.|..|... +..+.|...|.+....... + .+..+.+.|...+.|.|.++|.+
T Consensus 288 ~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~Wlk 367 (1051)
T KOG3513|consen 288 TYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLK 367 (1051)
T ss_pred eeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEee
Confidence 3445678999999999999999999999999764 7788888888776543333 2 33467799999999999999999
Q ss_pred CCcccCCCCcee-----ec------cccceeeceeEEeeccceeeEEeeeceeeeC-cEEEecCCce--EeeCCCcEEEE
Q psy10160 85 TTTTEATSPHVY-----AA------LTHCVPWSNVCLFGARSGYLKETQNGGYLVP-VKVNITLETQ--VFGVGSDISIP 150 (558)
Q Consensus 85 ~~~~~~~~~~~~-----~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~--~v~~G~~v~L~ 150 (558)
|+.++....+.. .| ......-.|-|.++|+.+.+.....+.+... |.+...+... .+..|..+.|.
T Consensus 368 Ng~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~ 447 (1051)
T KOG3513|consen 368 NGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTID 447 (1051)
T ss_pred CCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEe
Confidence 998887665521 11 1111122456888899888888887777654 6666665555 45789999999
Q ss_pred eEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccCCCCCCCCCC
Q psy10160 151 CDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLP 230 (558)
Q Consensus 151 C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~ 230 (558)
|...+.|.|.+.|.|.+..+ .+++|+.+..+|+|.|.+++.+|+|.|+|.|.|..|.......|.|+++. .+...|
T Consensus 448 C~~~asP~p~~~W~k~~~~~-~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~t---ri~~~P 523 (1051)
T KOG3513|consen 448 CKPFASPKPKVSWLKGGEKL-LQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDAT---RITLAP 523 (1051)
T ss_pred eccCCCCcceEEEEcCCccc-ccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCc---eEEecc
Confidence 99999999999999999844 44569999999999999999999999999999999999999999997654 222211
Q ss_pred ccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhh-------hhhhhcccccchhhhhhhHHHhh
Q psy10160 231 LFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAA-------ADKKRRSRRSLSVVNKWSLRQAF 303 (558)
Q Consensus 231 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~-------~~~~~~grth~q~a~~~t~g~~~ 303 (558)
.+.. +..|....+.|..... -.+...+.|.+|+....... .+-...||...+.++-.+.|.|.
T Consensus 524 --~~~~-------v~~g~~v~l~Ce~shD-~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~ 593 (1051)
T KOG3513|consen 524 --SNTD-------VKVGESVTLTCEASHD-PSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYT 593 (1051)
T ss_pred --chhh-------hccCceEEEEeecccC-CCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEE
Confidence 1111 1222234455554433 46677789999876443222 11122256777777778888887
Q ss_pred cc
Q psy10160 304 TT 305 (558)
Q Consensus 304 ~~ 305 (558)
+.
T Consensus 594 C~ 595 (1051)
T KOG3513|consen 594 CV 595 (1051)
T ss_pred EE
Confidence 64
|
|
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-25 Score=235.28 Aligned_cols=286 Identities=16% Similarity=0.244 Sum_probs=211.6
Q ss_pred CCceE-ecCCeEEEcCCCCCCCEEEEEEEEeCCcceE----EEEEEEE-------eCCCCccCCCCc---cccCceeEEe
Q psy10160 6 SENYE-LNKNMLTIKRVEPERLGAYTCQAYNGLGRAV----SWTVTLQ-------ALPSEKVADPNA---IDYGTILSSA 70 (558)
Q Consensus 6 ~~r~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~----s~~l~V~-------~~p~~~~~~~~~---v~~~~~~~~~ 70 (558)
.+|+. ..+|.|.|.+|..+|.|.|.|.+.+...... -+.|.+. ..|.+....|+. .++..+.+.|
T Consensus 184 ~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LEC 263 (1051)
T KOG3513|consen 184 NRRVFSQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLEC 263 (1051)
T ss_pred cceeEecccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEE
Confidence 34554 4789999999999999999999998544331 2344431 234444444433 3445667999
Q ss_pred ccCCCCCCcEEEEeCCcccCCCCceeeccccc---------eeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEe
Q psy10160 71 FPSESASPVVTQTTTTTTEATSPHVYAALTHC---------VPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVF 141 (558)
Q Consensus 71 ~~~~~p~p~v~W~~~~~~~~~~~~~~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v 141 (558)
++-|+|.|.|.|.+.+.....+.......... ..-.|.|.+.|..+.......+.+..+|.+...+.+..+
T Consensus 264 fA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~ 343 (1051)
T KOG3513|consen 264 FALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEA 343 (1051)
T ss_pred EecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEe
Confidence 99999999999999988544433222111111 122456777788776666677778889999999999999
Q ss_pred eCCCcEEEEeEeeccCCCeEEEEECCEEeccCCc--eEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEec
Q psy10160 142 GVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV--HYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219 (558)
Q Consensus 142 ~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~--~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 219 (558)
..|+.++|.|.+.|.|.|.|.|++||.++....+ ++.+ .+++|+|.+++.+|+|+|+|.|+|.+|....++.|+|..
T Consensus 344 ~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i-~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a 422 (1051)
T KOG3513|consen 344 DTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKI-DDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLA 422 (1051)
T ss_pred cCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEE-eCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEc
Confidence 9999999999999999999999999999985442 2443 578999999999999999999999999999999999975
Q ss_pred cCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhh-hhhhhcccccchhhhhhh
Q psy10160 220 IFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAA-ADKKRRSRRSLSVVNKWS 298 (558)
Q Consensus 220 ~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~-~~~~~~grth~q~a~~~t 298 (558)
. .|.+...+......... +..+...|...+.|+|.+.|.+.+....... ..+...|...+..++...
T Consensus 423 ~--~P~f~~~p~~~~~~a~~----------g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~D 490 (1051)
T KOG3513|consen 423 S--APVFPLNPVERKVMAVV----------GGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSD 490 (1051)
T ss_pred c--CCCCCCCccceEEEEEe----------CCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCccc
Confidence 4 24444333222111111 4445567888899999999999987444444 566677888888888899
Q ss_pred HHHhhc
Q psy10160 299 LRQAFT 304 (558)
Q Consensus 299 ~g~~~~ 304 (558)
.|.|.+
T Consensus 491 aG~YtC 496 (1051)
T KOG3513|consen 491 AGKYTC 496 (1051)
T ss_pred CcEEEE
Confidence 998887
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=213.86 Aligned_cols=280 Identities=19% Similarity=0.200 Sum_probs=191.8
Q ss_pred ceEecCCeEEEcCCCC-----CCCEEEEEEEEeC-CcceEEEEEEEE--eCCCCcc-CCCCccc-cCceeEEeccCCCCC
Q psy10160 8 NYELNKNMLTIKRVEP-----ERLGAYTCQAYNG-LGRAVSWTVTLQ--ALPSEKV-ADPNAID-YGTILSSAFPSESAS 77 (558)
Q Consensus 8 r~~~~~~~L~I~~v~~-----~D~G~Y~C~a~n~-~g~~~s~~l~V~--~~p~~~~-~~~~~v~-~~~~~~~~~~~~~p~ 77 (558)
+-.+.|++|.|.++.. -|+|.|+|.|.-. .|..-+.+..|. ..+.+.. .....+. .+.+.+.|.+.+.|.
T Consensus 90 ~~~LsNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~ 169 (1381)
T KOG4221|consen 90 RQLLSNGSLYISSVLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPV 169 (1381)
T ss_pred HhhccCCceeEeeecccccccccCceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCccC
Confidence 3447899999999988 7899999999865 555544444444 3343322 2233444 457778999999999
Q ss_pred CcEEEEeCCcccCCCCcee----------------eccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEe
Q psy10160 78 PVVTQTTTTTTEATSPHVY----------------AALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVF 141 (558)
Q Consensus 78 p~v~W~~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v 141 (558)
|.+.|.++...++...++- .|.|.|.+.+...........+.+...........|...+...++
T Consensus 170 p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v 249 (1381)
T KOG4221|consen 170 PTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVV 249 (1381)
T ss_pred ceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCcccc
Confidence 9999999988776655543 566777666543332222222222211111222336677888999
Q ss_pred eCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccC
Q psy10160 142 GVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIF 221 (558)
Q Consensus 142 ~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 221 (558)
.+|+.+.|+|.+.|.|+|.|.|.|||..+..++.++.+...++|.|.+++.+|+|.|+|+|+|......+...|.|..+|
T Consensus 250 ~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P 329 (1381)
T KOG4221|consen 250 VEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPP 329 (1381)
T ss_pred ccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCC
Confidence 99999999999999999999999999999988778888888899999999999999999999988888888889997553
Q ss_pred CCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhhhhhhccc-ccchhhhhhhHH
Q psy10160 222 IHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAADKKRRSR-RSLSVVNKWSLR 300 (558)
Q Consensus 222 ~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~~~~~~gr-th~q~a~~~t~g 300 (558)
.+...|. .+. .+.+++.. ..|.+.|.|.|.+.|+||+-....+....+..++ ..+.-......|
T Consensus 330 ---~~~~~p~----~l~-----A~e~~die---~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg 394 (1381)
T KOG4221|consen 330 ---GFTKAPT----TLV-----AHESMDIE---FECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEG 394 (1381)
T ss_pred ---CCCCCCc----cee-----eeecccee---EeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccch
Confidence 3332221 111 12223334 4455669999999999998766654433333333 333333444455
Q ss_pred Hh
Q psy10160 301 QA 302 (558)
Q Consensus 301 ~~ 302 (558)
.|
T Consensus 395 ~y 396 (1381)
T KOG4221|consen 395 FY 396 (1381)
T ss_pred hh
Confidence 44
|
|
| >cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-21 Score=181.80 Aligned_cols=175 Identities=27% Similarity=0.263 Sum_probs=134.0
Q ss_pred eeecccceeEEEEeccCCCCCCCcccccchh-------hhhhhhh-hhhhhcccccchhhhhhhHHHhhcccccccccch
Q psy10160 243 YCQHHYYSQFCCESCTRAGQLPSYGPHIKRA-------VEAEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDPN 314 (558)
Q Consensus 243 ~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~-------l~~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~~~ 314 (558)
++|.+.+..+...+... +.....+..+... +...... +++++.+|||.|+|+|+++||++.+ |.+.|.++
T Consensus 36 ~~h~g~s~~d~~~t~~~-~~~~~~l~~l~~~l~~~~~~l~~~a~~~~~~~~~~~th~q~A~p~t~g~~~~~-~~~~l~~~ 113 (231)
T cd01594 36 LVHKGRSSNDIGTTALR-LALRDALDDLLPLLKALIDALALKAEAHKGTVMPGRTHLQDAQPVTLGYELRA-WAQVLGRD 113 (231)
T ss_pred CCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEeecccccccCccccHHHHHHH-HHHHHHHH
Confidence 34555555555554443 3333333333333 2333333 7899999999999999999999997 99999999
Q ss_pred HHHHHhHhhhhhhhcCCCCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q psy10160 315 DRQALNIVSIFYFTYLVKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLA 394 (558)
Q Consensus 315 ~~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~d~~~~~ 394 (558)
++||..+ +++++++.|+.++.+++||++|+++|+
T Consensus 114 ~~rL~~~----------------------------------------------~~~~~~~~l~~~~~~l~r~a~d~~~~~ 147 (231)
T cd01594 114 LERLEEA----------------------------------------------AVAEALDALALAAAHLSKIAEDLRLLL 147 (231)
T ss_pred HHHHHHH----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999988 899999999999999999999999999
Q ss_pred cCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHHHH
Q psy10160 395 SGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIR 469 (558)
Q Consensus 395 s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (558)
+ .|++++.+|+ .++|||+||||+||+.+|.+++++..+.|....+.....+. ++.+...+...+..++...
T Consensus 148 ~---~~~~~~~~~~~~~~~gSS~mp~k~Np~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~ 220 (231)
T cd01594 148 S---GEFGELGEPFLPGQPGSSIMPQKVNPVAAELVRGLAGLVIGNLVAVLTALKGG-PERDNEDSPSMREILADSL 220 (231)
T ss_pred C---CCCCeeeCccCCCCCCCcCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHhcc-cccccccCHHHHHHHHHHH
Confidence 7 6778888876 48999999999999999999999999999998887666554 3333333333344444443
|
Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective |
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-20 Score=196.86 Aligned_cols=284 Identities=17% Similarity=0.196 Sum_probs=201.1
Q ss_pred eEecCCeEEEcCCCCCCCEEEEEEEEeCCcceE--EEEEEEEeCCCCccCCCCc-cccC-ceeEEeccCCCCCCcEEEEe
Q psy10160 9 YELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV--SWTVTLQALPSEKVADPNA-IDYG-TILSSAFPSESASPVVTQTT 84 (558)
Q Consensus 9 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~--s~~l~V~~~p~~~~~~~~~-v~~~-~~~~~~~~~~~p~p~v~W~~ 84 (558)
..+.+|.|.|.+++.+|+|+|.|++.|..|... -++++|++.|.+...+... +..| +..+.|.+.+.|.|.|.|.+
T Consensus 182 ~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk 261 (1281)
T KOG4222|consen 182 ALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKK 261 (1281)
T ss_pred EEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeec
Confidence 336899999999999999999999999999875 4577788777665444333 3333 56688999999999999999
Q ss_pred CCcccCCCCceeeccccc---------eeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeec
Q psy10160 85 TTTTEATSPHVYAALTHC---------VPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDG 155 (558)
Q Consensus 85 ~~~~~~~~~~~~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g 155 (558)
++..++.+...-...... .-..++|.+.+..+.+.......+..||.|...+.+..+..|..++|.|.+.|
T Consensus 262 ~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~g 341 (1281)
T KOG4222|consen 262 DDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLG 341 (1281)
T ss_pred cCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCC
Confidence 876666543221110011 11246888999989898888899999999999999999999999999999999
Q ss_pred cCCCeEEEEECCEE-ecc------CCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccC---CCCC
Q psy10160 156 YPIPQVFWYKDGQV-IEN------DGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIF---IHPS 225 (558)
Q Consensus 156 ~P~p~i~W~~~g~~-l~~------~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~---~~p~ 225 (558)
+|.|.+.|.|.|.. +-. ...+..+...++|.|.++++.|.|.|.|...|..|.......+.+.+.. .||.
T Consensus 342 nP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp 421 (1281)
T KOG4222|consen 342 NPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPP 421 (1281)
T ss_pred CCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCc
Confidence 99999999997643 211 1236667777899999999999999999999999888655555443221 1222
Q ss_pred CCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhhh--hhhcccccchhhhhhhHHHhh
Q psy10160 226 CRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAAD--KKRRSRRSLSVVNKWSLRQAF 303 (558)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~~--~~~~grth~q~a~~~t~g~~~ 303 (558)
++. ....+.++-+ +......|.+.|.|-+.+.|++++........+ ....++.+....+-...|-|-
T Consensus 422 ~i~-~g~~nQtl~v----------~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YT 490 (1281)
T KOG4222|consen 422 IIE-QGPANQTLPV----------GSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYT 490 (1281)
T ss_pred eee-eccccccccc----------CcccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCccee
Confidence 221 1112222222 222335677889999999999999887655522 222245555554444444443
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-19 Score=179.88 Aligned_cols=205 Identities=19% Similarity=0.278 Sum_probs=162.4
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE--EEEEEEEeCCCCccCCCC-ccccCce-eEEeccCCCCCCcEEEEeCCccc
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV--SWTVTLQALPSEKVADPN-AIDYGTI-LSSAFPSESASPVVTQTTTTTTE 89 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~--s~~l~V~~~p~~~~~~~~-~v~~~~~-~~~~~~~~~p~p~v~W~~~~~~~ 89 (558)
+.|.+.+|...|+|.|+|+++|.+|..+ .+.++|.+.|.+...|.. .+..|.. -+.|.+.|.|.|.|.|.++++..
T Consensus 574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtd 653 (873)
T KOG4194|consen 574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTD 653 (873)
T ss_pred heeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCC
Confidence 5799999999999999999999999885 677788888877544432 3455654 48999999999999999998763
Q ss_pred CCC---Cceee----------ccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeecc
Q psy10160 90 ATS---PHVYA----------ALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGY 156 (558)
Q Consensus 90 ~~~---~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~ 156 (558)
-+. .+.+. .......--|.|.+.+..|.++....+.+...|.+.++..+..|..|+++.|.|.+.|.
T Consensus 654 FPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~ 733 (873)
T KOG4194|consen 654 FPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGA 733 (873)
T ss_pred CchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCC
Confidence 221 11111 01111122457888888899999999889899999999999999999999999999999
Q ss_pred CC-CeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEe
Q psy10160 157 PI-PQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218 (558)
Q Consensus 157 P~-p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 218 (558)
|. |.+.|+|.++++....+.+....+.-|++.+...+|+|.|+|...|..|.....+.+.|.
T Consensus 734 ~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~ 796 (873)
T KOG4194|consen 734 PADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVY 796 (873)
T ss_pred CCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEe
Confidence 98 999999999988766544444445578999999999999999999999998777766664
|
|
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-18 Score=170.10 Aligned_cols=193 Identities=17% Similarity=0.243 Sum_probs=121.0
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCC---ccCCCCccccC-ceeEEecc-----CCCCCCcEEEE
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSE---KVADPNAIDYG-TILSSAFP-----SESASPVVTQT 83 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~---~~~~~~~v~~~-~~~~~~~~-----~~~p~p~v~W~ 83 (558)
..|.|.++..+|+|.|+|.++|..|... +..|+|....+. ....++.+.+| ...+.|.. .+.|+|.++|+
T Consensus 82 ~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~ 161 (326)
T PHA02785 82 SNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWS 161 (326)
T ss_pred ceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEc
Confidence 4599999999999999999999887654 666676554321 12223444444 44466753 35789999998
Q ss_pred eCCcccCCCCceeecccccee---------eceeEEeeccceeeEE----eeecee---eeCcEEEecCCceEeeCCCcE
Q psy10160 84 TTTTTEATSPHVYAALTHCVP---------WSNVCLFGARSGYLKE----TQNGGY---LVPVKVNITLETQVFGVGSDI 147 (558)
Q Consensus 84 ~~~~~~~~~~~~~~g~~~~~~---------~~~~~~~~~~~~~~~~----~~~~~~---~~p~~~~~~~~~~~v~~G~~v 147 (558)
++.. + ...+......+.+. -.|.|.+.+..+.... ...+.+ ..||.+ ..|....+..|+.+
T Consensus 162 k~~~-~-~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~~v 238 (326)
T PHA02785 162 GHRR-L-RNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGSNL 238 (326)
T ss_pred cCCc-c-CCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCCCcE
Confidence 7542 2 11111100001111 1334555544332211 111122 134443 34566677889999
Q ss_pred EEEeEeeccCCC---eEEEEECCEEeccCC----ceEEEcc-----------CCeEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 148 SIPCDVDGYPIP---QVFWYKDGQVIENDG----VHYRITE-----------SNRLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 148 ~L~C~~~g~P~p---~i~W~~~g~~l~~~~----~~~~~~~-----------~~sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
+|.|.+.|.|.| .+.|+|||..+...+ .++.... .+.|.|.+|+.+|+|.|+|.|.|..|..
T Consensus 239 ~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 239 TIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred EEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 999999999875 799999999885421 1322211 2479999999999999999999988544
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-19 Score=188.49 Aligned_cols=217 Identities=21% Similarity=0.297 Sum_probs=166.4
Q ss_pred ccccCCceE-ecCCeEEEcCCCCCCCEEEEEEEEeCCcceE--EEEEEEEeCCCC-----ccCC--CCcccc-CceeEEe
Q psy10160 2 IQVRSENYE-LNKNMLTIKRVEPERLGAYTCQAYNGLGRAV--SWTVTLQALPSE-----KVAD--PNAIDY-GTILSSA 70 (558)
Q Consensus 2 ~p~~~~r~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~--s~~l~V~~~p~~-----~~~~--~~~v~~-~~~~~~~ 70 (558)
+|+.+ |+. +.+|.|.|.++++.|.|.|+|.++++..... .+.++|..-+.. +... +..+.+ .++++.|
T Consensus 181 l~~~~-r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leC 259 (1381)
T KOG4221|consen 181 LPLDS-RVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLEC 259 (1381)
T ss_pred ccCCC-cEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEE
Confidence 56666 544 6999999999999999999999999765443 445555421111 1112 233444 4778999
Q ss_pred ccCCCCCCcEEEEeCCcccCCCCce-eeccccce---------eeceeEEeeccceeeEEeeeceeeeCcEEEecCCceE
Q psy10160 71 FPSESASPVVTQTTTTTTEATSPHV-YAALTHCV---------PWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQV 140 (558)
Q Consensus 71 ~~~~~p~p~v~W~~~~~~~~~~~~~-~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 140 (558)
++.+.|+|.|.|.+++..+...... ....-..+ .-.+.|.++|............+..||.+...+...+
T Consensus 260 vvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~ 339 (1381)
T KOG4221|consen 260 VVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLV 339 (1381)
T ss_pred EecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCccee
Confidence 9999999999999998776654321 11111111 2245777777666777777778888999999999999
Q ss_pred eeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEecc
Q psy10160 141 FGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGI 220 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 220 (558)
..++.++.|.|.+.|+|.|.+.|+|||..+..++ .+++..++.|+|..+-..|.|.|.|.+.|..|.....+.+.|...
T Consensus 340 A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsd-y~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~ 418 (1381)
T KOG4221|consen 340 AHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSD-YFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQ 418 (1381)
T ss_pred eeeccceeEeCCCCCCCcceEEEEecCcccCccc-ceEecCCCCcEEEEEecccchhhhhhhccCcccccchhhheeccC
Confidence 9999999999999999999999999998887744 777888777999999999999999999999999998888866433
|
|
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=183.34 Aligned_cols=278 Identities=21% Similarity=0.236 Sum_probs=197.8
Q ss_pred cCCceEecCCeEEEcCCC-----CCCCEEEEEEEEeCCcceEEE--EEEEEeCCCCccCCCCc---cccCceeEEec-cC
Q psy10160 5 RSENYELNKNMLTIKRVE-----PERLGAYTCQAYNGLGRAVSW--TVTLQALPSEKVADPNA---IDYGTILSSAF-PS 73 (558)
Q Consensus 5 ~~~r~~~~~~~L~I~~v~-----~~D~G~Y~C~a~n~~g~~~s~--~l~V~~~p~~~~~~~~~---v~~~~~~~~~~-~~ 73 (558)
.+.|+.+.+++|.+..+- ..|.|.|+|.++|..|..++. .+.+.+.+......|.. +.+.+.++.|- +.
T Consensus 78 ~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ 157 (1281)
T KOG4222|consen 78 GSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPR 157 (1281)
T ss_pred CCcceecCCccEEEEecccCCcccCCCceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCC
Confidence 456888999998887652 239999999999999998754 55555555544444433 23446666665 56
Q ss_pred CCCCCcEEEEeCCcccC--CCCce----------------eeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEec
Q psy10160 74 ESASPVVTQTTTTTTEA--TSPHV----------------YAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNIT 135 (558)
Q Consensus 74 ~~p~p~v~W~~~~~~~~--~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 135 (558)
+.|.|.|.|++++..+. ..... ..|.|.|++.+.+.+.... .+.+.+..+|.|...
T Consensus 158 ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~------~A~lsv~e~P~f~~r 231 (1281)
T KOG4222|consen 158 GHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESI------PARLSVQEKPWFWKR 231 (1281)
T ss_pred CCCCCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccc------cceeeeccCCccccc
Confidence 67999999999987776 11111 2456666555554443332 234445578889999
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccC-CeEEEccCCCCCCeEEEEEEEeCCceeeEEEE
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES-NRLHINQANATDSGEYRCVASNSYTSDENAVT 214 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~-~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 214 (558)
+....|.+|..+.+.|.+.|.|.|.+.|.|++..++.. +|.+..+ .+|.|.+++..|.|.|.|.+.|..|..+....
T Consensus 232 p~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~--ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ 309 (1281)
T KOG4222|consen 232 PKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRS--RYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASAT 309 (1281)
T ss_pred cccceeecccccccccccCCCCCCceeeeccCCCCCcc--ceeeeeccccccccccCCCcccceeeeccccccccccccc
Confidence 99999999999999999999999999999988877764 5666555 79999999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhh---------hhhhh
Q psy10160 215 IRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAA---------ADKKR 285 (558)
Q Consensus 215 l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~---------~~~~~ 285 (558)
+.|+++ |.+...+... . +..+.+.++- |.+.|.|+|++.|.+.+...+.-. ..+.-
T Consensus 310 ltV~ap---P~f~kkp~dq--~-------v~lg~~vt~p---c~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~ 374 (1281)
T KOG4222|consen 310 LTVQAP---PSFGKKPRDQ--K-------VALGGTVTFP---CETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSP 374 (1281)
T ss_pred eEEecC---cccccccCcc--c-------cccCceEEee---eecCCCCCcceEEeccCcceecccCCCCCcCccceecC
Confidence 999655 4444333211 1 2222334444 556699999999999876654321 12333
Q ss_pred cccccchhhhhhhHHHhhcc
Q psy10160 286 RSRRSLSVVNKWSLRQAFTT 305 (558)
Q Consensus 286 ~grth~q~a~~~t~g~~~~~ 305 (558)
.|..|....++...|.|...
T Consensus 375 ~g~L~it~v~~~d~g~Yvcq 394 (1281)
T KOG4222|consen 375 TGTLTITNVRQSDEGYYVCQ 394 (1281)
T ss_pred CCCcccccccccccceEeec
Confidence 45667777777777777764
|
|
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-17 Score=130.38 Aligned_cols=94 Identities=20% Similarity=0.267 Sum_probs=82.2
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEcc---CCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE---SNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~---~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
|.|...+....+..|+.+.|.|.+.|.|.|.+.|+|+|..+..+. ++.+.. .+.|.|.++..+|+|.|+|.|.|..
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~-~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~ 79 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGE-GIKIENTENSSKLTITEGQQEHCGCYTLEVENKL 79 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCC-cEEEEecCCeeEEEECCCChhhCEEEEEEEEcCC
Confidence 456667888999999999999999999999999999999997543 454432 4579999999999999999999999
Q ss_pred ceeeEEEEEEEeccCCCC
Q psy10160 207 TSDENAVTIRVEGIFIHP 224 (558)
Q Consensus 207 G~~~~~~~l~V~~~~~~p 224 (558)
|....++.|.|.+.|.+|
T Consensus 80 G~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 80 GSRQAQVNLTVVDKPDPP 97 (98)
T ss_pred CceeEEEEEEEecCCCCC
Confidence 999999999999887666
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=157.46 Aligned_cols=203 Identities=15% Similarity=0.123 Sum_probs=139.6
Q ss_pred cCceeEEeccCC--CCCCcEEEEeCCcccCCCCcee---------ec-------cccce---------eeceeEEeeccc
Q psy10160 63 YGTILSSAFPSE--SASPVVTQTTTTTTEATSPHVY---------AA-------LTHCV---------PWSNVCLFGARS 115 (558)
Q Consensus 63 ~~~~~~~~~~~~--~p~p~v~W~~~~~~~~~~~~~~---------~g-------~~~~~---------~~~~~~~~~~~~ 115 (558)
+....+.|.+.+ ..+-.+.|.+++...+...-.. .| .+.-+ ...|-|.++|..
T Consensus 518 g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~F 597 (873)
T KOG4194|consen 518 GENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNHF 597 (873)
T ss_pred ccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEeccc
Confidence 345557777666 4566799999876443221100 00 00000 113456666666
Q ss_pred eee-EEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEE-eccC-CceE-EEccCCeEEEccCC
Q psy10160 116 GYL-KETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQV-IEND-GVHY-RITESNRLHINQAN 191 (558)
Q Consensus 116 ~~~-~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~-l~~~-~~~~-~~~~~~sL~I~~v~ 191 (558)
|.. ..+.+..+...|.|...|.+.+++.|+.+.|.|.++|.|.|+|.|.|+|.. .+.. .+|. .+.++..+.|.+|+
T Consensus 598 GStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk 677 (873)
T KOG4194|consen 598 GSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVK 677 (873)
T ss_pred CcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEeccc
Confidence 533 345666777889999999999999999999999999999999999998765 5432 2343 44455689999999
Q ss_pred CCCCeEEEEEEEeCCceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCC-Cccccc
Q psy10160 192 ATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLP-SYGPHI 270 (558)
Q Consensus 192 ~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~-~~~~w~ 270 (558)
.+|.|.|+|.|.|..|..+.+++|.|.+.| .+..+ .....+ ..|.+.. ..|.+.|.|. |...|+
T Consensus 678 ~eD~GiYtC~A~n~AG~isanAtL~V~e~p---~f~~P---L~~~~V------~~get~v---lqC~a~~~~a~pr~~W~ 742 (873)
T KOG4194|consen 678 IEDQGIYTCTAQNVAGQISANATLTVLETP---SFSIP---LEDQLV------VVGETLV---LQCLAEGAPADPRLEWF 742 (873)
T ss_pred ccccceeEEeeeccccceeeceEEEEecCC---ccccc---ccceEE------EecceEE---EEEecCCCCCCcccccc
Confidence 999999999999999999999999997553 22211 112222 2222333 4555667777 999999
Q ss_pred chhhhhhhhh
Q psy10160 271 KRAVEAEAAA 280 (558)
Q Consensus 271 ~~~l~~~~~~ 280 (558)
++...+...+
T Consensus 743 k~d~pil~t~ 752 (873)
T KOG4194|consen 743 KEDKPILITE 752 (873)
T ss_pred CCCCceEEee
Confidence 9988776555
|
|
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5e-16 Score=144.04 Aligned_cols=65 Identities=25% Similarity=0.481 Sum_probs=54.1
Q ss_pred eeCCCcEEEEeEee-----ccCCCeEEEEECCEEeccCCceEEEcc-CCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 141 FGVGSDISIPCDVD-----GYPIPQVFWYKDGQVIENDGVHYRITE-SNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 141 v~~G~~v~L~C~~~-----g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
+.+|+.+.|+|.+. |.|.|.+.|+|++.++..++ ++.+.. +++|.|.+++.+|+|.|+|.|+...
T Consensus 141 ~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~-r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 141 FNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTD-RIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred EecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCC-CEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 45799999999986 34689999999999987554 555544 4589999999999999999999875
|
|
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-16 Score=124.37 Aligned_cols=88 Identities=22% Similarity=0.417 Sum_probs=77.2
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
||.+...+.+..+.+|+.+.|.|.+.|+|.|.+.|+|++..+.... ++. ..++.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~-~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 78 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATA-EIS-MSGAVLKIFNIQPEDEGTYECEAENIKGK 78 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCC-EEe-cCCCEEEECcCChhhCEEEEEEEEcCCCc
Confidence 5778888889999999999999999999999999999998776532 443 24568999999999999999999999999
Q ss_pred eeEEEEEEEe
Q psy10160 209 DENAVTIRVE 218 (558)
Q Consensus 209 ~~~~~~l~V~ 218 (558)
....+.|.|+
T Consensus 79 ~~~~~~l~V~ 88 (88)
T cd05851 79 DKHQARVYVQ 88 (88)
T ss_pred eEEEEEEEEC
Confidence 9999998873
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.9e-16 Score=118.95 Aligned_cols=74 Identities=28% Similarity=0.575 Sum_probs=66.8
Q ss_pred CCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 143 ~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
+|+.+.|.|.+.|+|.|.+.|+|++..+..+. ++.+..+++|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDR-RHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCC-CeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 68999999999999999999999999887643 555667789999999999999999999999999999988875
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-16 Score=117.53 Aligned_cols=73 Identities=25% Similarity=0.477 Sum_probs=66.7
Q ss_pred CCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 144 G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
|+.+.|.|.+.|.|.|.|.|+|++..+..+ .++.+..+++|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~-~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNN-SRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccC-CCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 788999999999999999999999887654 4788888899999999999999999999999999999988875
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.9e-16 Score=120.91 Aligned_cols=81 Identities=26% Similarity=0.434 Sum_probs=70.4
Q ss_pred CCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEcc----C---CeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy10160 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE----S---NRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216 (558)
Q Consensus 144 G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~----~---~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 216 (558)
|+.+.|.|.+.|.|+|.+.|+|++..+..+..+|.+.. . ++|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 78999999999999999999999998866544665432 1 4799999999999999999999999999999999
Q ss_pred EeccCCCC
Q psy10160 217 VEGIFIHP 224 (558)
Q Consensus 217 V~~~~~~p 224 (558)
|.++|.+|
T Consensus 81 V~~~P~~P 88 (88)
T cd05735 81 VQEPPDPP 88 (88)
T ss_pred EeCCCCCC
Confidence 98887665
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=115.88 Aligned_cols=71 Identities=20% Similarity=0.473 Sum_probs=62.0
Q ss_pred EEEEeEeeccCCCeEEEEECCEEeccCCceEEEccC--C--eEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES--N--RLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 147 v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~--~--sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
+.|.|.+.|.|.|.+.|+|++..+..++.++.+..+ + +|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 479999999999999999999998765557665432 3 7999999999999999999999999999988875
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-15 Score=117.73 Aligned_cols=80 Identities=21% Similarity=0.408 Sum_probs=69.5
Q ss_pred ceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEcc---CCeEEEccCCCCCCeEEEEEEEeCCceeeEEEE
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE---SNRLHINQANATDSGEYRCVASNSYTSDENAVT 214 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~---~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 214 (558)
...+.+|+.+.|.|.+.|.|.|.+.|+|++.++...+.++.+.. .++|.|.++.++|+|.|+|.|.|..|....++.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 45678999999999999999999999999999976544565543 347999999999999999999999999998888
Q ss_pred EEE
Q psy10160 215 IRV 217 (558)
Q Consensus 215 l~V 217 (558)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 875
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=115.38 Aligned_cols=71 Identities=27% Similarity=0.491 Sum_probs=62.5
Q ss_pred EEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCC----eEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN----RLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 147 v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~----sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
+.|.|.+.|.|.|.+.|+|++..+..+..++.+..++ +|.|.+++.+|+|.|+|.|.|..|+.+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 5799999999999999999999987655577665433 6999999999999999999999999999988875
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.4e-15 Score=119.51 Aligned_cols=82 Identities=22% Similarity=0.405 Sum_probs=69.7
Q ss_pred CceEeeCCCcEEEEeEeec-cCCCeEEEEECCEEeccCCceEEEcc-------CCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 137 ETQVFGVGSDISIPCDVDG-YPIPQVFWYKDGQVIENDGVHYRITE-------SNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~-------~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
....+.+|+.+.|.|.+.| .|+|.+.|+|+|.++..+........ .++|.|.+++++|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 4567889999999999999 89999999999999975443332222 257999999999999999999999999
Q ss_pred eeEEEEEEEe
Q psy10160 209 DENAVTIRVE 218 (558)
Q Consensus 209 ~~~~~~l~V~ 218 (558)
.+.++.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9999999884
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.9e-15 Score=119.08 Aligned_cols=90 Identities=28% Similarity=0.608 Sum_probs=74.8
Q ss_pred CcEEEecC--CceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccC-CeEEEccCCCCCCeEEEEEEEeC
Q psy10160 129 PVKVNITL--ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES-NRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 129 p~~~~~~~--~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~-~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
||.+...+ ....+..|+.+.|.|.+.|.|.|.+.|+|+|..+.....++....+ +.|.|.+++.+|+|.|+|.|.|.
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 80 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENK 80 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcC
Confidence 34444433 3456789999999999999999999999999988765446655544 46999999999999999999999
Q ss_pred CceeeEEEEEEEe
Q psy10160 206 YTSDENAVTIRVE 218 (558)
Q Consensus 206 ~G~~~~~~~l~V~ 218 (558)
.|....++.|.|.
T Consensus 81 ~G~~~~~~~L~V~ 93 (95)
T cd05730 81 AGEQEAEIHLKVF 93 (95)
T ss_pred CCeEEEEEEEEEE
Confidence 9999999999885
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.7e-15 Score=116.77 Aligned_cols=87 Identities=23% Similarity=0.373 Sum_probs=74.9
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
|+.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.... .+. ..+++|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~ 78 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSA-EIS-MSGAVLKIPNIQFEDEGTYECEAENIKGK 78 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCcc-EEE-EeCCEEEECCCCcccCEEEEEEEEECCCc
Confidence 4566677788889999999999999999999999999887765543 232 35679999999999999999999999999
Q ss_pred eeEEEEEEE
Q psy10160 209 DENAVTIRV 217 (558)
Q Consensus 209 ~~~~~~l~V 217 (558)
...++.|.|
T Consensus 79 ~~~~~~l~V 87 (88)
T cd04968 79 DTHQGRIYV 87 (88)
T ss_pred EEEEEEEEE
Confidence 999988887
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.8e-15 Score=117.79 Aligned_cols=85 Identities=25% Similarity=0.499 Sum_probs=70.2
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCC-CeEEEEE-CCEEeccCCceEEEccC----CeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPI-PQVFWYK-DGQVIENDGVHYRITES----NRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~-p~i~W~~-~g~~l~~~~~~~~~~~~----~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
.+.|....+.+|+.+.|.|.+.|.|. |.+.|++ ++..+...+.++.+..+ ++|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~ 83 (96)
T cd05865 4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNED 83 (96)
T ss_pred EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCC
Confidence 45566778899999999999999995 7999998 77766554445554322 589999999999999999999997
Q ss_pred -ceeeEEEEEEE
Q psy10160 207 -TSDENAVTIRV 217 (558)
Q Consensus 207 -G~~~~~~~l~V 217 (558)
|..+.++.|.|
T Consensus 84 ~g~~~~s~~l~v 95 (96)
T cd05865 84 EGESEATVNVKI 95 (96)
T ss_pred CCcEEEEEEEEE
Confidence 88889988887
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.7e-15 Score=117.00 Aligned_cols=87 Identities=29% Similarity=0.555 Sum_probs=75.8
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEcc---CCeEEEccCCCCCCeEEEEEEEe
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE---SNRLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~---~~sL~I~~v~~~D~G~Y~C~a~N 204 (558)
.||.+...+....+.+|+.+.|.|.+.|+|.|.+.|+|+|..+..+. ++.+.. .++|.|.+++.+|+|.|+|.|.|
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N 80 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQ-RHQITSTEYKSTFEISKVQMSDEGNYTVVVEN 80 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCC-cEEEEEcCCeeEEEECCCCcccCEeEEEEEEc
Confidence 47888888889999999999999999999999999999998876543 555443 34899999999999999999999
Q ss_pred CCceeeEEEEE
Q psy10160 205 SYTSDENAVTI 215 (558)
Q Consensus 205 ~~G~~~~~~~l 215 (558)
..|....++.|
T Consensus 81 ~~G~~~~~~~l 91 (92)
T cd05747 81 SEGKQEAQFTL 91 (92)
T ss_pred CCCCEeEEEEe
Confidence 99999887765
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.8e-15 Score=111.33 Aligned_cols=71 Identities=25% Similarity=0.591 Sum_probs=63.2
Q ss_pred cEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 146 DISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 146 ~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
.+.|.|.+.|.|.|.+.|+|++..+.... ++.+..++.|.|.+++.+|+|.|+|.|.|..|+...++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~-~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSD-YFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCC-CEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 47899999999999999999999886544 566667778999999999999999999999999999988875
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.7e-15 Score=115.33 Aligned_cols=83 Identities=27% Similarity=0.505 Sum_probs=72.8
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEE
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENA 212 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 212 (558)
...|.+..+..|+.+.|.|.+.|.|.|.+.|+|++..+.... ++.. .++.|.|.++..+|+|.|+|.|.|..|....+
T Consensus 3 ~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~-~~~~-~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 80 (85)
T cd05728 3 LKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASEN-RIEV-EAGDLRITKLSLSDSGMYQCVAENKHGTIYAS 80 (85)
T ss_pred cccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCC-eEEE-eCCEEEEeeCCHHHCEEEEEEEECCCCeEEEE
Confidence 345677889999999999999999999999999999887544 5544 56789999999999999999999999999998
Q ss_pred EEEEE
Q psy10160 213 VTIRV 217 (558)
Q Consensus 213 ~~l~V 217 (558)
+.|.|
T Consensus 81 ~~l~V 85 (85)
T cd05728 81 AELAV 85 (85)
T ss_pred EEEEC
Confidence 88865
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.8e-15 Score=111.76 Aligned_cols=73 Identities=26% Similarity=0.532 Sum_probs=66.3
Q ss_pred CCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 144 G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
|+.+.|.|.+.|.|.|.+.|+|++..+.... ++.+..+++|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSS-RICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCC-CEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 7889999999999999999999999886544 667777889999999999999999999999999999988875
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=115.65 Aligned_cols=82 Identities=30% Similarity=0.549 Sum_probs=69.4
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEc-c-C--CeEEEccCCCCCCeEEEEEEEeCCceee
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT-E-S--NRLHINQANATDSGEYRCVASNSYTSDE 210 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~-~--~sL~I~~v~~~D~G~Y~C~a~N~~G~~~ 210 (558)
.|....+.+|+.+.|.|.+.|.|.|.+.|+|++..+..++ ++.+. . . .+|.|.+++.+|+|.|+|.|.|..|...
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSD-HYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGET 85 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCC-CEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcce
Confidence 3456778999999999999999999999999999987654 44432 1 2 3799999999999999999999999999
Q ss_pred EEEEEEE
Q psy10160 211 NAVTIRV 217 (558)
Q Consensus 211 ~~~~l~V 217 (558)
..+.|.|
T Consensus 86 ~~~~v~v 92 (92)
T cd05737 86 VDVTVSV 92 (92)
T ss_pred EEEEEeC
Confidence 8888765
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=111.45 Aligned_cols=73 Identities=25% Similarity=0.497 Sum_probs=64.1
Q ss_pred CCcEEEEeEeeccCCCeEEEEECCEEeccCC--ceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDG--VHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 144 G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~--~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
|+.+.|.|.+.|.|.|.+.|+|+|..+.... .++. ..+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRH-VSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEE-eeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 7889999999999999999999999886532 2343 35678999999999999999999999999999999887
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=115.61 Aligned_cols=81 Identities=21% Similarity=0.405 Sum_probs=68.7
Q ss_pred ceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEcc--------CCeEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE--------SNRLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~--------~~sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
...+..|+.+.|.|.+.|+|.|.+.|+|+|.++..+...+.... .++|.|.+++.+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 55678899999999999999999999999999876543222111 2579999999999999999999999999
Q ss_pred eEEEEEEEe
Q psy10160 210 ENAVTIRVE 218 (558)
Q Consensus 210 ~~~~~l~V~ 218 (558)
+.++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 999998884
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=107.20 Aligned_cols=65 Identities=29% Similarity=0.630 Sum_probs=57.1
Q ss_pred EEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 147 v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
+.|.|.+.|+|.|.+.|+|+|.++... ...+.|.|.++..+|+|.|+|.|+|..|..++++.+.|
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 479999999999999999999988632 23468999999999999999999999998888877776
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=110.35 Aligned_cols=71 Identities=25% Similarity=0.457 Sum_probs=61.1
Q ss_pred EEEEeEeeccCCCeEEEEECCEEeccCCceEEEccC--C--eEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES--N--RLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 147 v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~--~--sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
+.|.|.+.|.|.|.+.|+|++..+..+..++.+..+ + +|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 479999999999999999999998765446655332 2 6999999999999999999999999999888865
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-14 Score=109.75 Aligned_cols=74 Identities=26% Similarity=0.468 Sum_probs=63.3
Q ss_pred CCcEEEEeEeeccCCCeEEEEECCEEeccCCc-eEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGV-HYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 144 G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~-~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
|+.+.|.|.+.|.|.|.|.|+|+|.++..... ......++.|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 78899999999999999999999998864321 122234568999999999999999999999999999999987
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-14 Score=114.88 Aligned_cols=89 Identities=25% Similarity=0.503 Sum_probs=71.4
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCC----ceEEEccC---CeEEEccCCCCCCeEEEEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG----VHYRITES---NRLHINQANATDSGEYRCV 201 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~----~~~~~~~~---~sL~I~~v~~~D~G~Y~C~ 201 (558)
.|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+.... .++.+..+ ++|.|.+++.+|+|.|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 3555556666666779999999999999999999999987764321 23333332 4799999999999999999
Q ss_pred EEeCCceeeEEEEEEE
Q psy10160 202 ASNSYTSDENAVTIRV 217 (558)
Q Consensus 202 a~N~~G~~~~~~~l~V 217 (558)
|.|..|..+.++.|.|
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999999999988875
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-14 Score=108.68 Aligned_cols=68 Identities=31% Similarity=0.697 Sum_probs=61.3
Q ss_pred EEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEE
Q psy10160 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTI 215 (558)
Q Consensus 147 v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 215 (558)
|.|.|.+.|.|.|.+.|+|++..+.... ++.+..+++|.|.+++.+|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESG-KFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCC-CEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 4799999999999999999999887544 6777778899999999999999999999999999888776
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-14 Score=113.07 Aligned_cols=83 Identities=19% Similarity=0.392 Sum_probs=68.4
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCce-EE-EccCCeEEEccCCCCCCeEEEEEEEeCCceeeEE
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH-YR-ITESNRLHINQANATDSGEYRCVASNSYTSDENA 212 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~-~~-~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 212 (558)
++....+.+|+.+.|.|.+.|.|.|.+.|++++..+...... .. ....++|.|.+++.+|.|.|+|.|.|..|....+
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~ 85 (90)
T cd04972 6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVS 85 (90)
T ss_pred CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEE
Confidence 445666899999999999999999999999999887654321 11 1223479999999999999999999999999998
Q ss_pred EEEEE
Q psy10160 213 VTIRV 217 (558)
Q Consensus 213 ~~l~V 217 (558)
+.|.|
T Consensus 86 ~~L~v 90 (90)
T cd04972 86 VQVTV 90 (90)
T ss_pred EEEeC
Confidence 88865
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-14 Score=110.52 Aligned_cols=77 Identities=25% Similarity=0.423 Sum_probs=65.6
Q ss_pred CcEEEEeEeeccC--CCeEEEEECCEEecc--CCceEEE----ccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy10160 145 SDISIPCDVDGYP--IPQVFWYKDGQVIEN--DGVHYRI----TESNRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216 (558)
Q Consensus 145 ~~v~L~C~~~g~P--~p~i~W~~~g~~l~~--~~~~~~~----~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 216 (558)
+++.|.|.+.+.| .+.|.|+|+|..+.. ++.+|.. ...++|.|.+++.+|+|+|+|.|.|..+..+.++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 4689999998744 778999999999973 3446665 2456899999999999999999999999999999999
Q ss_pred EeccC
Q psy10160 217 VEGIF 221 (558)
Q Consensus 217 V~~~~ 221 (558)
|.+||
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 98764
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-14 Score=108.27 Aligned_cols=71 Identities=27% Similarity=0.558 Sum_probs=60.9
Q ss_pred EEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEe
Q psy10160 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218 (558)
Q Consensus 147 v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 218 (558)
+.|.|.+.|.|.|.+.|+|++..+..+. ......+++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|+
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCc-eeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 4799999999999999999998776543 2233456799999999999999999999999999999998873
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.6e-14 Score=114.54 Aligned_cols=88 Identities=19% Similarity=0.485 Sum_probs=70.0
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEecc----CCceEEEcc---CCeEEEccCCCCCCeEEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVIEN----DGVHYRITE---SNRLHINQANATDSGEYR 199 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l~~----~~~~~~~~~---~~sL~I~~v~~~D~G~Y~ 199 (558)
+|.+. .+.+..+.+|+.++|.|.+.|.|.|.+.|+|+ +..+.. .+.++.+.. .++|.|.+++.+|+|.|+
T Consensus 2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 2 QPHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CCEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 44554 35678889999999999999999999999994 444432 123555542 347999999999999999
Q ss_pred EEEEeCCceeeEEEEEEE
Q psy10160 200 CVASNSYTSDENAVTIRV 217 (558)
Q Consensus 200 C~a~N~~G~~~~~~~l~V 217 (558)
|.|.|..|....++.|.|
T Consensus 81 C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 81 CEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEeccCCcceeEEEEeC
Confidence 999999999998888875
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.9e-14 Score=112.10 Aligned_cols=87 Identities=31% Similarity=0.601 Sum_probs=76.1
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEcc---CCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE---SNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~---~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+..+. ++.+.. ..+|.|.+++.+|+|.|+|.|.|..
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~ 79 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQ-RYQIESDGGSSSLTIKNVTREDAGTYTCVASNSS 79 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSS-SEEEEEETTEEEEEESSESGGGSEEEEEEEEETT
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeee-eeeeecccceeEEccCCCChhhCEEEEEEEEECC
Confidence 567777889999999999999999999999999999999998754 444332 3479999999999999999999999
Q ss_pred ceeeEEEEEEE
Q psy10160 207 TSDENAVTIRV 217 (558)
Q Consensus 207 G~~~~~~~l~V 217 (558)
|..+..+.|.|
T Consensus 80 g~~~~~~~l~V 90 (90)
T PF07679_consen 80 GEATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEEE
T ss_pred CEEEEEEEEEC
Confidence 99999998876
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.4e-14 Score=108.99 Aligned_cols=74 Identities=24% Similarity=0.422 Sum_probs=64.6
Q ss_pred CCcEEEEeEeeccCCCeEEEEECCEEeccCCce-EEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH-YRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 144 G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~-~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
|+.+.|.|.+.|.|.|.+.|+++|..+...... .....++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 788999999999999999999999988654322 23345678999999999999999999999999999999887
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=5e-14 Score=114.53 Aligned_cols=89 Identities=27% Similarity=0.517 Sum_probs=70.5
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccC----CceEEEccCCeEEEc-----cCCCCCCeEEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEND----GVHYRITESNRLHIN-----QANATDSGEYR 199 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~----~~~~~~~~~~sL~I~-----~v~~~D~G~Y~ 199 (558)
||.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+... ..+.....++.+.+. .++.+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 577788888999999999999999999999999999999988651 222333344443322 23689999999
Q ss_pred EEEEeCCce-eeEEEEEEE
Q psy10160 200 CVASNSYTS-DENAVTIRV 217 (558)
Q Consensus 200 C~a~N~~G~-~~~~~~l~V 217 (558)
|.|.|..|. .+..+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999999 567788776
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.6e-14 Score=111.16 Aligned_cols=83 Identities=33% Similarity=0.547 Sum_probs=70.7
Q ss_pred cCCceEeeCCCcEEEEeEe-eccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee-eEE
Q psy10160 135 TLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD-ENA 212 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~-~~~ 212 (558)
.|....+.+|+++.|.|.+ .|.|.|.+.|+|++..+.....++....+++|.|.+++.+|+|.|+|.|.|..|.. +..
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~ 81 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAA 81 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeee
Confidence 3567788899999999998 79999999999999998875556666667899999999999999999999999987 455
Q ss_pred EEEEE
Q psy10160 213 VTIRV 217 (558)
Q Consensus 213 ~~l~V 217 (558)
+.|.|
T Consensus 82 ~~l~V 86 (86)
T cd05724 82 ARLSV 86 (86)
T ss_pred EEEEC
Confidence 55543
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-14 Score=112.66 Aligned_cols=78 Identities=23% Similarity=0.526 Sum_probs=67.8
Q ss_pred CCcEEEEeEeeccCCCeEEEEECCEEec-------cCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy10160 144 GSDISIPCDVDGYPIPQVFWYKDGQVIE-------NDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216 (558)
Q Consensus 144 G~~v~L~C~~~g~P~p~i~W~~~g~~l~-------~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 216 (558)
|+.+.|.|.+.|.|.|.+.|+|++..+. ....++.+..+++|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE 80 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 7889999999999999999999886431 123477777778999999999999999999999999999999999
Q ss_pred EeccC
Q psy10160 217 VEGIF 221 (558)
Q Consensus 217 V~~~~ 221 (558)
|.+..
T Consensus 81 V~~~~ 85 (90)
T cd05726 81 VTDVI 85 (90)
T ss_pred Eeecc
Confidence 98654
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=136.26 Aligned_cols=190 Identities=12% Similarity=0.165 Sum_probs=114.6
Q ss_pred CceeEEecc-----CCCCCCcEEEEeCCcccCC------CC--------ceeeccccceeeceeEEeeccceeeEEeeec
Q psy10160 64 GTILSSAFP-----SESASPVVTQTTTTTTEAT------SP--------HVYAALTHCVPWSNVCLFGARSGYLKETQNG 124 (558)
Q Consensus 64 ~~~~~~~~~-----~~~p~p~v~W~~~~~~~~~------~~--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (558)
....+.|.. .+.|.|.++|++++..... .. ...+|.|.|.+. |..+.......+
T Consensus 42 e~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~-------N~~g~~~~s~~L 114 (326)
T PHA02785 42 EPVILPCPQINTLSSGYNILDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITK-------NETYCDMMSLNL 114 (326)
T ss_pred CCEEEECCCccccccCCCCceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEE-------CCCcceEEEEEE
Confidence 345567765 6788999999998643111 11 112455555544 443322222222
Q ss_pred eee--eCcEEEecCCceEeeCCCcEEEEeE-----eeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeE
Q psy10160 125 GYL--VPVKVNITLETQVFGVGSDISIPCD-----VDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGE 197 (558)
Q Consensus 125 ~~~--~p~~~~~~~~~~~v~~G~~v~L~C~-----~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~ 197 (558)
.+. .++.+...+.+..+.+|+.+.|.|. ..+.|.|.+.|+++.. + .+.++....++.|.|.+++.+|.|.
T Consensus 115 ~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~--~~~r~~~~~~~~L~i~~v~~~d~G~ 191 (326)
T PHA02785 115 TIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L--RNKRLKQRTPGIITIEDVRKNDAGY 191 (326)
T ss_pred EEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c--CCcceEecCCCeEEEeecChhhCeE
Confidence 221 1222222334455779999999997 3467999999988642 2 2336665567799999999999999
Q ss_pred EEEEEEeCCceee----EEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCC---Cccccc
Q psy10160 198 YRCVASNSYTSDE----NAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLP---SYGPHI 270 (558)
Q Consensus 198 Y~C~a~N~~G~~~----~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~---~~~~w~ 270 (558)
|+|.|.|..|... ..+.|.|..+..+|.+. .| .. ... .. +......|.+.|.|+ +.+.|+
T Consensus 192 Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~-~p--~~-~~~------~~---G~~v~L~C~a~g~P~~~~~~v~W~ 258 (326)
T PHA02785 192 YTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQ-LP--EG-VVT------SI---GSNLTIACRVSLRPPTTDADVFWI 258 (326)
T ss_pred EEEEEEeccCCEEEeEEEEEEEEEeccCCCceec-CC--Cc-EEe------cC---CCcEEEEEEEECCCCCCCceEEEE
Confidence 9999999988764 34456665544444332 12 11 111 12 233345555657665 478999
Q ss_pred chhhhh
Q psy10160 271 KRAVEA 276 (558)
Q Consensus 271 ~~~l~~ 276 (558)
+|+...
T Consensus 259 kng~~i 264 (326)
T PHA02785 259 SNGMYY 264 (326)
T ss_pred ECCEEC
Confidence 997644
|
|
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.2e-14 Score=111.03 Aligned_cols=85 Identities=22% Similarity=0.414 Sum_probs=67.5
Q ss_pred cEEEecCCceEeeCC---CcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCC-CCCCeEEEEEEEeC
Q psy10160 130 VKVNITLETQVFGVG---SDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQAN-ATDSGEYRCVASNS 205 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G---~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~-~~D~G~Y~C~a~N~ 205 (558)
|.|...|....+.++ +.+.|.|.+.|+|.|.++|+|++..+.....++.+ .++.|.|.++. .+|+|.|+|.|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~-~~g~L~I~~~~~~~D~G~Y~C~A~N~ 80 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM-VGGNLVINNPDKYKDAGRYVCIVSNI 80 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE-ECCEEEECcCCcCCCCEEEEEEEEeC
Confidence 556666666666544 47999999999999999999999988654446654 46899999985 69999999999999
Q ss_pred Cceee-EEEEE
Q psy10160 206 YTSDE-NAVTI 215 (558)
Q Consensus 206 ~G~~~-~~~~l 215 (558)
.|... ..++|
T Consensus 81 ~G~~~s~~a~l 91 (93)
T cd05849 81 YGKVRSREATL 91 (93)
T ss_pred cceEEEccEEE
Confidence 99884 44444
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.1e-14 Score=110.94 Aligned_cols=84 Identities=24% Similarity=0.481 Sum_probs=65.6
Q ss_pred cEEEecCCceEee---CCCcEEEEeEeeccCCCeEEEEECCEEeccCC-ceEEEccCCeEEEccCC-CCCCeEEEEEEEe
Q psy10160 130 VKVNITLETQVFG---VGSDISIPCDVDGYPIPQVFWYKDGQVIENDG-VHYRITESNRLHINQAN-ATDSGEYRCVASN 204 (558)
Q Consensus 130 ~~~~~~~~~~~v~---~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~-~~~~~~~~~sL~I~~v~-~~D~G~Y~C~a~N 204 (558)
|.|...|.+..+. +|+.+.|.|.+.|.|.|.|.|+|+|..+.... .++. ..+++|.|.++. .+|+|.|+|.|.|
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~-~~~g~L~i~~~~~~~D~G~Y~C~A~N 80 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYS-LIDGNLIISNPSEVKDSGRYQCLATN 80 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEE-eeCCeEEEccCCccCcCEEEEEEEEc
Confidence 4555566666553 47899999999999999999999999886433 2443 345789999985 6999999999999
Q ss_pred CCceee-EEEE
Q psy10160 205 SYTSDE-NAVT 214 (558)
Q Consensus 205 ~~G~~~-~~~~ 214 (558)
..|... ..+.
T Consensus 81 ~~G~~~S~~~~ 91 (94)
T cd05848 81 SIGSILSREAL 91 (94)
T ss_pred CCCeEEeccEE
Confidence 999884 3444
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.7e-14 Score=114.56 Aligned_cols=94 Identities=21% Similarity=0.303 Sum_probs=73.2
Q ss_pred eCcEEEecCCceEe----eCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEc--c-----CCeEEEccCC-CCCC
Q psy10160 128 VPVKVNITLETQVF----GVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT--E-----SNRLHINQAN-ATDS 195 (558)
Q Consensus 128 ~p~~~~~~~~~~~v----~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~--~-----~~sL~I~~v~-~~D~ 195 (558)
.+|.+...+....+ ..|+.+.|.|.+.|.|.|.+.|+|+|..+...+.++... . .++|.|.++. .+|.
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~ 82 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDY 82 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCC
Confidence 35555555443232 246889999999999999999999999987544455422 1 2479999997 5999
Q ss_pred eEEEEEEEeCCceeeEEEEEEEeccC
Q psy10160 196 GEYRCVASNSYTSDENAVTIRVEGIF 221 (558)
Q Consensus 196 G~Y~C~a~N~~G~~~~~~~l~V~~~~ 221 (558)
|.|+|.|.|..|.....+.|.|.++|
T Consensus 83 G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 83 ALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred EEEEEEEEeCCccCcEEEEEEecCCC
Confidence 99999999999999999999996554
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.7e-14 Score=109.31 Aligned_cols=77 Identities=26% Similarity=0.420 Sum_probs=63.8
Q ss_pred CcEEEEeEeeccCCC--eEEEEECCEEeccC--CceEEE----ccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy10160 145 SDISIPCDVDGYPIP--QVFWYKDGQVIEND--GVHYRI----TESNRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216 (558)
Q Consensus 145 ~~v~L~C~~~g~P~p--~i~W~~~g~~l~~~--~~~~~~----~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 216 (558)
+.++|.|.+.|.|.| .+.|+++|..+... ..++.. ...++|.|.+++.+|+|.|+|.|.|..|..++++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 468999999999998 47999999988643 223321 1346899999999999999999999999999999999
Q ss_pred EeccC
Q psy10160 217 VEGIF 221 (558)
Q Consensus 217 V~~~~ 221 (558)
|.++|
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98653
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.4e-14 Score=110.43 Aligned_cols=81 Identities=31% Similarity=0.575 Sum_probs=68.7
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEE--ccC--CeEEEccCCCCCCeEEEEEEEeCCceeeE
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI--TES--NRLHINQANATDSGEYRCVASNSYTSDEN 211 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~--~~~--~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~ 211 (558)
|....+.+|+.+.|.|.+.|.|.|.+.|+|++..+..+. ++.+ ..+ .+|.|.+++.+|+|.|+|.|.|..|....
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSE-HYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETV 86 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCC-CEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence 456778999999999999999999999999999886654 3332 222 37999999999999999999999999999
Q ss_pred EEEEEE
Q psy10160 212 AVTIRV 217 (558)
Q Consensus 212 ~~~l~V 217 (558)
++.|.|
T Consensus 87 ~~~v~~ 92 (92)
T cd05891 87 DVTVSV 92 (92)
T ss_pred EEEEEC
Confidence 888865
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=109.75 Aligned_cols=85 Identities=21% Similarity=0.401 Sum_probs=67.3
Q ss_pred cEEEecCCceEeeCC---CcEEEEeEeeccCCCeEEEEECCEEeccC-CceEEEccCCeEEEccCC-CCCCeEEEEEEEe
Q psy10160 130 VKVNITLETQVFGVG---SDISIPCDVDGYPIPQVFWYKDGQVIEND-GVHYRITESNRLHINQAN-ATDSGEYRCVASN 204 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G---~~v~L~C~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~~sL~I~~v~-~~D~G~Y~C~a~N 204 (558)
|.|...|.+..+.+| +.+.|.|.+.|+|.|.++|+++|..+... +.++.+ .+++|.|.++. .+|+|.|+|.|+|
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~g~L~I~~~~~~~D~G~Y~C~A~N 80 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL-VAGNLVINNPQKARDAGSYQCLAIN 80 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE-ECCeEEEccCCccCcCEEEEEEEEc
Confidence 455667777777665 57999999999999999999999998643 335554 46789998865 5999999999999
Q ss_pred CCceee-EEEEE
Q psy10160 205 SYTSDE-NAVTI 215 (558)
Q Consensus 205 ~~G~~~-~~~~l 215 (558)
..|... ..+.|
T Consensus 81 ~~G~~~s~~a~l 92 (94)
T cd05850 81 RCGTVVSREANL 92 (94)
T ss_pred CcCcEEEEEEEE
Confidence 999884 45544
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=99.53 E-value=9e-14 Score=109.20 Aligned_cols=79 Identities=23% Similarity=0.542 Sum_probs=66.6
Q ss_pred eEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCc--eEEE-ccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEE
Q psy10160 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV--HYRI-TESNRLHINQANATDSGEYRCVASNSYTSDENAVTI 215 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~--~~~~-~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 215 (558)
..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.. .+.. ....+|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 4577899999999999999999999999998875432 1222 234579999999999999999999999999999888
Q ss_pred EE
Q psy10160 216 RV 217 (558)
Q Consensus 216 ~V 217 (558)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 75
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=109.45 Aligned_cols=84 Identities=30% Similarity=0.538 Sum_probs=69.1
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC-CEEeccCCceEEEccCC---eEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD-GQVIENDGVHYRITESN---RLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
+.+.+.+..+.+|+.+.|.|.+.|.|. .+.|+++ +..+..+ .++.+..++ +|.|.++..+|+|.|+|.|.|..|
T Consensus 3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~-~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G 80 (92)
T cd05866 3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSS-QRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKG 80 (92)
T ss_pred EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCC-CCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCC
Confidence 345667788999999999999999998 8999984 6666543 466665554 899999999999999999999999
Q ss_pred ee-eEEEEEEE
Q psy10160 208 SD-ENAVTIRV 217 (558)
Q Consensus 208 ~~-~~~~~l~V 217 (558)
.. .+++.|.|
T Consensus 81 ~~~~~~i~l~~ 91 (92)
T cd05866 81 QTQEATVVLEI 91 (92)
T ss_pred cEEEEEEEEEE
Confidence 87 57777765
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.4e-14 Score=109.52 Aligned_cols=77 Identities=25% Similarity=0.403 Sum_probs=63.9
Q ss_pred CcEEEEeEeeccCCC--eEEEEECCEEeccCC--ceE----EEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy10160 145 SDISIPCDVDGYPIP--QVFWYKDGQVIENDG--VHY----RITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216 (558)
Q Consensus 145 ~~v~L~C~~~g~P~p--~i~W~~~g~~l~~~~--~~~----~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 216 (558)
+.+.|.|.+.|.|.| .+.|+|+|..+.... .++ ....+++|.|.+++.+|+|.|+|.|.|..|..+.++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999999988 568999999886432 122 223457899999999999999999999999999999999
Q ss_pred EeccC
Q psy10160 217 VEGIF 221 (558)
Q Consensus 217 V~~~~ 221 (558)
|.++|
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98753
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-13 Score=106.29 Aligned_cols=72 Identities=28% Similarity=0.638 Sum_probs=59.8
Q ss_pred EEEEeEeeccCCCeEEEEECCEEeccCCceEEEcc-CCeEEEccCCCCCCeEEEEEEEeCCceee--EEEEEEEe
Q psy10160 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE-SNRLHINQANATDSGEYRCVASNSYTSDE--NAVTIRVE 218 (558)
Q Consensus 147 v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~--~~~~l~V~ 218 (558)
++|.|.+.|.|.|.+.|+|+|.++.....++.+.. .++|.|.+++.+|+|.|.|.|.|..|... ..++|.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 57999999999999999999999876544544433 45899999999999999999999999874 56666663
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.6e-14 Score=106.06 Aligned_cols=73 Identities=26% Similarity=0.597 Sum_probs=62.9
Q ss_pred CCcEEEEeEeeccCCCeEEEEE-CCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 144 GSDISIPCDVDGYPIPQVFWYK-DGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 144 G~~v~L~C~~~g~P~p~i~W~~-~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
|+.+.|.|.+.|.|.|.+.|++ ++..+... .++....+++|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNS-SRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCC-CeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7889999999999999999997 56555443 4566667789999999999999999999999999988888765
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-13 Score=111.10 Aligned_cols=88 Identities=25% Similarity=0.485 Sum_probs=70.6
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccC----CceEEEccC---CeEEEccCCCCCCeEEEEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEND----GVHYRITES---NRLHINQANATDSGEYRCV 201 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~----~~~~~~~~~---~sL~I~~v~~~D~G~Y~C~ 201 (558)
+|++. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... ..++.+... ++|.|.+++.+|+|.|+|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 34443 345677889999999999999999999999998666532 124444332 4799999999999999999
Q ss_pred EEeCCceeeEEEEEEE
Q psy10160 202 ASNSYTSDENAVTIRV 217 (558)
Q Consensus 202 a~N~~G~~~~~~~l~V 217 (558)
|.|..|..+.++.|.|
T Consensus 81 a~N~~G~~~~s~~l~v 96 (96)
T cd05732 81 ASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEeCCCCcEEEEEEeC
Confidence 9999999998888865
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.1e-14 Score=105.24 Aligned_cols=69 Identities=29% Similarity=0.603 Sum_probs=60.4
Q ss_pred EEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 147 v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
+.|.|.+.|.|.|.+.|+|++..++.. ++....+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKG--RAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCC--cEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 479999999999999999998776543 555557789999999999999999999999999998888765
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=104.89 Aligned_cols=71 Identities=28% Similarity=0.552 Sum_probs=60.8
Q ss_pred cEEEEeEeeccCCCeEEEEECCEEeccCCceEEEcc---CCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 146 DISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE---SNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 146 ~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~---~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
.+.|.|.+.|.|.|.+.|+|+|..+..+. ++.+.. .++|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSG-RVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCC-eEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 37899999999999999999999986543 444432 347999999999999999999999999999888875
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-13 Score=104.37 Aligned_cols=69 Identities=28% Similarity=0.635 Sum_probs=60.2
Q ss_pred EEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 147 v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
+.|.|.+.|.|.|.+.|+|+|..+..+. ++. ..+++|.|.+++.+|+|.|+|.|.|..|....++.+.|
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~-~~~-~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKN-RTK-KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCC-EEE-cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 4699999999999999999999987653 443 45678999999999999999999999999888877776
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.8e-14 Score=104.05 Aligned_cols=68 Identities=34% Similarity=0.634 Sum_probs=57.4
Q ss_pred EEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 147 v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
+.|.|.+.|+|.|.+.|+|+|.++.... + ...+++|.|.++..+|+|.|+|.|.|..|..+...++.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~-~--~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNH-T--FKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCC-E--EccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 3689999999999999999999987542 3 234568999999999999999999999998876666554
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=105.21 Aligned_cols=71 Identities=27% Similarity=0.561 Sum_probs=61.5
Q ss_pred EEEEeEeeccCCCeEEEEECCEEecc-CCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee-eEEEEEEE
Q psy10160 147 ISIPCDVDGYPIPQVFWYKDGQVIEN-DGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD-ENAVTIRV 217 (558)
Q Consensus 147 v~L~C~~~g~P~p~i~W~~~g~~l~~-~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 217 (558)
++|.|.+.|.|.|.|.|+|++..+.. .+.++....+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 47999999999999999999998863 2346777778899999999999999999999999986 67777776
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-13 Score=109.00 Aligned_cols=86 Identities=26% Similarity=0.403 Sum_probs=70.3
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCC-ceEEEccCCeEEEccC-----CCCCCeEEEEEEEeC
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG-VHYRITESNRLHINQA-----NATDSGEYRCVASNS 205 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~-~~~~~~~~~sL~I~~v-----~~~D~G~Y~C~a~N~ 205 (558)
|...|.+..+.+|+++.|.|.+.|.|.|.+.|+|+|..+.... .++....+++|.|.++ +.+|.|.|+|.|.|.
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~ 81 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQND 81 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECC
Confidence 3456677888899999999999999999999999999887543 2355556778888877 689999999999999
Q ss_pred -Ccee-eEEEEEEE
Q psy10160 206 -YTSD-ENAVTIRV 217 (558)
Q Consensus 206 -~G~~-~~~~~l~V 217 (558)
.|.. +..++|.|
T Consensus 82 ~~G~~~s~~~~l~v 95 (95)
T cd05722 82 SLGSIVSRTARLTV 95 (95)
T ss_pred ccCcEEEeeeEEeC
Confidence 9987 56676654
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=107.50 Aligned_cols=78 Identities=24% Similarity=0.447 Sum_probs=64.6
Q ss_pred EeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 140 VFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 140 ~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
....|+.+.|.|.+.|.|.|.+.|+|++..+.............+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 356799999999999999999999999988765432222223358999999999999999999999999988888765
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-13 Score=107.00 Aligned_cols=79 Identities=19% Similarity=0.506 Sum_probs=66.8
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEc-cCCeEEEccCCCCCCeEEEEEEEeCCcee-eEEE
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT-ESNRLHINQANATDSGEYRCVASNSYTSD-ENAV 213 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~ 213 (558)
+..+.+.+|+.+.|.|.+.|. .|.+.|+|++..+... ++.+. .+++|.|.+++++|+|.|.|.|.|..|.. +..+
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~ 86 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP--RLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPY 86 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC--CEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeE
Confidence 446678999999999999999 9999999999887643 34443 34689999999999999999999999986 5677
Q ss_pred EEEE
Q psy10160 214 TIRV 217 (558)
Q Consensus 214 ~l~V 217 (558)
.|.|
T Consensus 87 ~L~V 90 (91)
T cd05740 87 ILNV 90 (91)
T ss_pred EEEe
Confidence 7777
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=103.72 Aligned_cols=70 Identities=31% Similarity=0.596 Sum_probs=59.4
Q ss_pred EEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 147 v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
+.|.|.+.|.|.|.+.|+|++..+.... ......+++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADR-TKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCc-eeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4799999999999999999998775432 222234568999999999999999999999999999998887
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-13 Score=104.81 Aligned_cols=79 Identities=28% Similarity=0.495 Sum_probs=66.8
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEE
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTI 215 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 215 (558)
|....+.+|+.+.|.|.+.|. .|.+.|+|+|.++..+. ++.+. +++|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~-~~~~~-~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v 77 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENN-RTRIT-GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSV 77 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCc-eEEEe-CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence 345678899999999999996 57899999999987644 56553 4689999999999999999999999998877776
Q ss_pred EE
Q psy10160 216 RV 217 (558)
Q Consensus 216 ~V 217 (558)
+|
T Consensus 78 ~V 79 (79)
T cd04973 78 NV 79 (79)
T ss_pred eC
Confidence 64
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.3e-13 Score=100.72 Aligned_cols=68 Identities=26% Similarity=0.541 Sum_probs=56.8
Q ss_pred CCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEE
Q psy10160 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTI 215 (558)
Q Consensus 144 G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 215 (558)
|+.+.|.|.+.|.|.|.|.|+|++..+.... ++. .....|.|.+++ |+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~-~~~-~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKED-EMP-VGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCcc-cee-cCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 6889999999999999999999999876543 333 234579999874 8999999999999998887765
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-13 Score=103.58 Aligned_cols=71 Identities=28% Similarity=0.487 Sum_probs=58.5
Q ss_pred EEEEeEeeccCCCeEEEEECCEEec-c-CCceEEEc-cCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 147 ISIPCDVDGYPIPQVFWYKDGQVIE-N-DGVHYRIT-ESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 147 v~L~C~~~g~P~p~i~W~~~g~~l~-~-~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
+.|.|.+.|.|.|.++|+|++.... . ...++.+. .++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4799999999999999999986432 1 12244433 3568999999999999999999999999999999887
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-13 Score=104.13 Aligned_cols=72 Identities=22% Similarity=0.369 Sum_probs=60.0
Q ss_pred CCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEcc---CCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy10160 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE---SNRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216 (558)
Q Consensus 144 G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~---~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 216 (558)
|+.+.|.|.+.|.|.|.+.|++++..+.... ++.+.. .++|.|.+++.+|+|.|+|.|.|..|.......+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSA-RVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCC-CEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 7889999999999999999999998886543 444332 24799999999999999999999999987655443
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.6e-13 Score=107.58 Aligned_cols=86 Identities=21% Similarity=0.390 Sum_probs=69.8
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCC-eEEEEECCEEeccC-CceEEEccC-------CeEEEccCCCC-CCeEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIEND-GVHYRITES-------NRLHINQANAT-DSGEY 198 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p-~i~W~~~g~~l~~~-~~~~~~~~~-------~sL~I~~v~~~-D~G~Y 198 (558)
||.+. .+....+.+|+.+.|.|.+.|.|.| .+.|++++..+... +.++.+... ++|.|.+++.+ |.|.|
T Consensus 2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 55554 3456678999999999999999999 59999999988653 246665443 37999999984 48999
Q ss_pred EEEEEeCCceeeEEEEE
Q psy10160 199 RCVASNSYTSDENAVTI 215 (558)
Q Consensus 199 ~C~a~N~~G~~~~~~~l 215 (558)
+|.|.|..|.....+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999998887765
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-13 Score=103.17 Aligned_cols=67 Identities=28% Similarity=0.576 Sum_probs=56.0
Q ss_pred EEeEeeccCCCeEEEEECCEEeccCCceEE--E------ccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy10160 149 IPCDVDGYPIPQVFWYKDGQVIENDGVHYR--I------TESNRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216 (558)
Q Consensus 149 L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~--~------~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 216 (558)
+.|.+.|+|.|.++|+|+|.++..+. +.. + ...++|.|.++..+|+|.|+|.|+|..|+...++.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESE-YICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCc-ceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 78999999999999999999997654 221 1 1235799999999999999999999999998887764
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.2e-13 Score=106.31 Aligned_cols=74 Identities=31% Similarity=0.575 Sum_probs=58.4
Q ss_pred CCcEEEEeEeeccCCCeEEEEECC----EEeccCCceE-EE----------ccCCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 144 GSDISIPCDVDGYPIPQVFWYKDG----QVIENDGVHY-RI----------TESNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 144 G~~v~L~C~~~g~P~p~i~W~~~g----~~l~~~~~~~-~~----------~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
|+.+.|.|.+.|.|.|.|+|+|++ ..+...+..+ .. .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 688999999999999999999953 3332222111 11 11247999999999999999999999999
Q ss_pred eeEEEEEEE
Q psy10160 209 DENAVTIRV 217 (558)
Q Consensus 209 ~~~~~~l~V 217 (558)
...++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 999999987
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=99.44 E-value=7e-13 Score=101.95 Aligned_cols=76 Identities=16% Similarity=0.409 Sum_probs=61.1
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCCC-eEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceee-
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDE- 210 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~- 210 (558)
...|.+..+.+|+.+.|+|.+.|+|.| .|.|+|+|.++... +. ...+.|.|.++ .|+|.|.|.|+|..|...
T Consensus 2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~---~~-~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP---PA-PSPSVLNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC---CC-CCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence 345677889999999999999999999 79999999988641 11 23457999887 588999999999999764
Q ss_pred EEEE
Q psy10160 211 NAVT 214 (558)
Q Consensus 211 ~~~~ 214 (558)
..++
T Consensus 76 ~~a~ 79 (81)
T cd05749 76 RTGT 79 (81)
T ss_pred eeEE
Confidence 3444
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.44 E-value=7e-13 Score=102.21 Aligned_cols=68 Identities=29% Similarity=0.599 Sum_probs=56.3
Q ss_pred EEeEeeccCCCeEEEEECCEEeccCCceE-EE--------ccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy10160 149 IPCDVDGYPIPQVFWYKDGQVIENDGVHY-RI--------TESNRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216 (558)
Q Consensus 149 L~C~~~g~P~p~i~W~~~g~~l~~~~~~~-~~--------~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 216 (558)
|.|.+.|+|.|.++|+|+|..+..+.... .. ...+.|.|.+++.+|+|.|+|.|.|..|..+.++.+.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 68999999999999999999997654211 11 1134799999999999999999999999999887765
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.5e-13 Score=98.87 Aligned_cols=68 Identities=24% Similarity=0.427 Sum_probs=56.1
Q ss_pred EEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEE
Q psy10160 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTI 215 (558)
Q Consensus 147 v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 215 (558)
+.|.|.+.|.|.|.+.|+|++.++..+..++.. .+++|.|.+++.+|+|.|+|.|.|..........+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~-~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHV-DGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEe-CCCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 468999999999999999999998765445554 34589999999999999999999987666544433
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.4e-13 Score=104.67 Aligned_cols=74 Identities=27% Similarity=0.503 Sum_probs=58.7
Q ss_pred CCcEEEEeEeeccCCCeEEEEEC----CEEeccCCc-eEEEcc----------CCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 144 GSDISIPCDVDGYPIPQVFWYKD----GQVIENDGV-HYRITE----------SNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 144 G~~v~L~C~~~g~P~p~i~W~~~----g~~l~~~~~-~~~~~~----------~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
|+.+.|.|.+.|.|.|.|.|+|+ +..+..++. ...+.. .++|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 68899999999999999999984 444433221 111111 147999999999999999999999999
Q ss_pred eeEEEEEEE
Q psy10160 209 DENAVTIRV 217 (558)
Q Consensus 209 ~~~~~~l~V 217 (558)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 999999887
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-12 Score=102.62 Aligned_cols=85 Identities=26% Similarity=0.517 Sum_probs=64.6
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccCCCeEEEEE-CCEEeccCCceEEEccC---CeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYK-DGQVIENDGVHYRITES---NRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~-~g~~l~~~~~~~~~~~~---~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
+.+.|....+..|+.+.|.|.+.|.| |.+.|++ ++..+...+........ ++|+|.+++.+|+|.|+|.|.|..|
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g 81 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG 81 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence 34567778899999999999999997 5999998 56555543322222222 3799999999999999999999975
Q ss_pred e-eeEEEEEEE
Q psy10160 208 S-DENAVTIRV 217 (558)
Q Consensus 208 ~-~~~~~~l~V 217 (558)
. ...++.|.|
T Consensus 82 ~~~~~sv~l~~ 92 (92)
T cd04977 82 TESEATVNLKI 92 (92)
T ss_pred CcceeEEEEEC
Confidence 4 467776654
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.41 E-value=9e-13 Score=101.76 Aligned_cols=71 Identities=24% Similarity=0.482 Sum_probs=56.7
Q ss_pred EEEEeEeeccCCCeEEEEECCEEe-c------cCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee-eEEEEEEE
Q psy10160 147 ISIPCDVDGYPIPQVFWYKDGQVI-E------NDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD-ENAVTIRV 217 (558)
Q Consensus 147 v~L~C~~~g~P~p~i~W~~~g~~l-~------~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 217 (558)
++|.|.+.|+|.|.+.|+|++... . ....++....+++|.|.++..+|+|.|.|.|.|..|.. +..+.|.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 579999999999999999964321 1 12335666677899999999999999999999999987 56666654
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=101.47 Aligned_cols=74 Identities=30% Similarity=0.468 Sum_probs=59.6
Q ss_pred CCcEEEEeEeeccCCCeEEEEECCE---E--eccCC--ceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy10160 144 GSDISIPCDVDGYPIPQVFWYKDGQ---V--IENDG--VHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216 (558)
Q Consensus 144 G~~v~L~C~~~g~P~p~i~W~~~g~---~--l~~~~--~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 216 (558)
|+.+.|.|.+.|.|.|.+.|+|++. . +.... .++.....++|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 7899999999999999999999732 1 11111 123344557899999999999999999999999999998887
Q ss_pred E
Q psy10160 217 V 217 (558)
Q Consensus 217 V 217 (558)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 5
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=104.04 Aligned_cols=80 Identities=23% Similarity=0.313 Sum_probs=65.8
Q ss_pred CceEeeCCCcEEEEeEeec-----cCCCeEEEEECCEEecc---CCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 137 ETQVFGVGSDISIPCDVDG-----YPIPQVFWYKDGQVIEN---DGVHYRITESNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g-----~P~p~i~W~~~g~~l~~---~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
....+.+|+.+.|.|.+.| .|.|.+.|+|++..+.. ...++.. .+++|.|.++..+|+|.|+|.+.|..|.
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ-QKDLLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee-cCCeEEEccCCcccCeEEEEEEcCCCcc
Confidence 3556779999999999999 78999999999876532 1234332 3578999999999999999999999999
Q ss_pred eeEEEEEEE
Q psy10160 209 DENAVTIRV 217 (558)
Q Consensus 209 ~~~~~~l~V 217 (558)
....+.|.|
T Consensus 86 ~~~~~~L~v 94 (94)
T cd05756 86 MKVSISLTV 94 (94)
T ss_pred EEEEEEEEC
Confidence 998888765
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-12 Score=98.46 Aligned_cols=72 Identities=31% Similarity=0.627 Sum_probs=61.5
Q ss_pred EEEEeEeeccCCCeEEEEECCEEeccCC-ceEEEccCC-eEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEe
Q psy10160 147 ISIPCDVDGYPIPQVFWYKDGQVIENDG-VHYRITESN-RLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218 (558)
Q Consensus 147 v~L~C~~~g~P~p~i~W~~~g~~l~~~~-~~~~~~~~~-sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 218 (558)
+.|.|.+.|.|.|.+.|+|++..+..+. .++....++ .|.|.+++.+|+|.|+|.|.|..|.....+.|.|+
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 3689999999999999999999876542 245444444 69999999999999999999999999999999885
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.6e-12 Score=99.79 Aligned_cols=81 Identities=25% Similarity=0.501 Sum_probs=62.5
Q ss_pred cEEEecCCceEeeC---CCcEEEEeEeeccCCCeEEEEECCEEeccC-CceEEEccCCeEEEccCC-CCCCeEEEEEEEe
Q psy10160 130 VKVNITLETQVFGV---GSDISIPCDVDGYPIPQVFWYKDGQVIEND-GVHYRITESNRLHINQAN-ATDSGEYRCVASN 204 (558)
Q Consensus 130 ~~~~~~~~~~~v~~---G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~~sL~I~~v~-~~D~G~Y~C~a~N 204 (558)
|.|...|.+..+.+ |+.+.|.|.+.|+|.|.+.|+|++..+... ..++.. .++.|.|.++. .+|+|.|+|.|.|
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~a~N 80 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL-VGGNLVISNPSKAKDAGRYQCLASN 80 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE-ECCEEEEecCCccCCCEEEEEEEEc
Confidence 34555566665544 467999999999999999999999988432 334443 45789999887 4999999999999
Q ss_pred CCceeeE
Q psy10160 205 SYTSDEN 211 (558)
Q Consensus 205 ~~G~~~~ 211 (558)
..|....
T Consensus 81 ~~G~~~S 87 (91)
T cd04967 81 IVGTVLS 87 (91)
T ss_pred CCCEEEe
Confidence 9998743
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.5e-12 Score=96.45 Aligned_cols=64 Identities=27% Similarity=0.571 Sum_probs=51.2
Q ss_pred EEEEeEeeccCCCeEEEEECCEEecc-CCceEEE-ccCCeEEEccCC----CCCCeEEEEEEEeCCceee
Q psy10160 147 ISIPCDVDGYPIPQVFWYKDGQVIEN-DGVHYRI-TESNRLHINQAN----ATDSGEYRCVASNSYTSDE 210 (558)
Q Consensus 147 v~L~C~~~g~P~p~i~W~~~g~~l~~-~~~~~~~-~~~~sL~I~~v~----~~D~G~Y~C~a~N~~G~~~ 210 (558)
+.|.|.+.|+|.|.+.|+|++..+.. .+.++.+ ..+++|.|..+. .+|+|.|+|.|.|..|...
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL 70 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence 47999999999999999999987642 2334444 356799998864 2479999999999999874
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.1e-12 Score=96.56 Aligned_cols=70 Identities=23% Similarity=0.555 Sum_probs=60.3
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
.|.+..+.+|+++.|.|.+.+ |.|.+.|+++|.++..+..++.+ .++.|.|.+++.+|+|.|+|.|.+..
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~-~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLL-YRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEE-ECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 456788899999999999865 77899999999999876556665 45789999999999999999999874
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.34 E-value=7e-12 Score=95.84 Aligned_cols=69 Identities=28% Similarity=0.535 Sum_probs=53.5
Q ss_pred EEEEeEeeccCCCeEEEEECCEEeccC-CceEEEc-cCCeEEEccCCCC----CCeEEEEEEEeCCceeeE-EEEE
Q psy10160 147 ISIPCDVDGYPIPQVFWYKDGQVIEND-GVHYRIT-ESNRLHINQANAT----DSGEYRCVASNSYTSDEN-AVTI 215 (558)
Q Consensus 147 v~L~C~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~-~~~sL~I~~v~~~----D~G~Y~C~a~N~~G~~~~-~~~l 215 (558)
+.|.|.+.|.|.|.|.|+|++.++... ..++... .+++|.|..+..+ |.|.|+|.|.|..|.... .++|
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 479999999999999999999987432 2234433 4678999888743 789999999999998754 4443
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.4e-12 Score=96.92 Aligned_cols=75 Identities=28% Similarity=0.530 Sum_probs=60.1
Q ss_pred EEEecCCceEeeCCCcEEEEeEeeccCCC-eEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 131 KVNITLETQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 131 ~~~~~~~~~~v~~G~~v~L~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
.+...|....+.+|++++|.|.+.+.|.+ .+.|+|+|..+.. .+++|.|.++ .+|+|.|+|.|.|. ..
T Consensus 2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~--------~~~~l~i~~~-~~dsG~Y~C~a~~~--~~ 70 (78)
T cd05752 2 VVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET--------TTNSYRIRAA-NNDSGEYRCQTQGS--SL 70 (78)
T ss_pred eEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec--------cCCeEEEeec-ccCCEEeEEECCCC--cC
Confidence 45567788889999999999999999875 6999999987732 3457999999 99999999999986 33
Q ss_pred eEEEEEE
Q psy10160 210 ENAVTIR 216 (558)
Q Consensus 210 ~~~~~l~ 216 (558)
+..++|.
T Consensus 71 S~~v~l~ 77 (78)
T cd05752 71 SDPVHLE 77 (78)
T ss_pred CCCEEEe
Confidence 4444443
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.8e-12 Score=96.50 Aligned_cols=64 Identities=30% Similarity=0.598 Sum_probs=52.3
Q ss_pred EEEEeEeeccCCCeEEEEECCEEeccC-CceEEE-ccCCeEEEccCCC----CCCeEEEEEEEeCCceee
Q psy10160 147 ISIPCDVDGYPIPQVFWYKDGQVIEND-GVHYRI-TESNRLHINQANA----TDSGEYRCVASNSYTSDE 210 (558)
Q Consensus 147 v~L~C~~~g~P~p~i~W~~~g~~l~~~-~~~~~~-~~~~sL~I~~v~~----~D~G~Y~C~a~N~~G~~~ 210 (558)
+.|.|.+.|+|.|.+.|+|++..+... ..++.. ..+++|.|.++.. +|+|.|+|.|.|..|...
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI 70 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence 479999999999999999999988543 234443 3468999999854 799999999999999874
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-11 Score=97.44 Aligned_cols=86 Identities=23% Similarity=0.422 Sum_probs=69.8
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCe-EEEEECCEEeccC-CceEEEccC-------CeEEEccCCCCC-CeEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQ-VFWYKDGQVIEND-GVHYRITES-------NRLHINQANATD-SGEY 198 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~-i~W~~~g~~l~~~-~~~~~~~~~-------~sL~I~~v~~~D-~G~Y 198 (558)
||.+ .......+.+|+.+.|.|.+.+.|+|. |.|.+++..+... ..+|.+... .+|.|.++..+| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 5555 566677789999999999999999986 7999988877553 347766432 379999998877 7999
Q ss_pred EEEEEeCCceeeEEEEE
Q psy10160 199 RCVASNSYTSDENAVTI 215 (558)
Q Consensus 199 ~C~a~N~~G~~~~~~~l 215 (558)
.|.|.|.+|.....++|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999999888776
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=96.50 Aligned_cols=77 Identities=25% Similarity=0.450 Sum_probs=64.3
Q ss_pred cCCceEeeCCCcEEEEeEeec-cCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEE
Q psy10160 135 TLETQVFGVGSDISIPCDVDG-YPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAV 213 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 213 (558)
.|....+.+|+.++|.|.+.+ .|.|.+.|++++..++.. ....++.|.|.+++.+|+|.|.|.|.|..|.....+
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~----~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~ 82 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR----AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATA 82 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc----ccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEE
Confidence 455677899999999999975 788999999998765432 123467899999999999999999999999998877
Q ss_pred EE
Q psy10160 214 TI 215 (558)
Q Consensus 214 ~l 215 (558)
.|
T Consensus 83 ~l 84 (85)
T cd05754 83 TL 84 (85)
T ss_pred EE
Confidence 65
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.2e-12 Score=95.71 Aligned_cols=68 Identities=31% Similarity=0.664 Sum_probs=55.2
Q ss_pred EEEEeEeec-cCCCeEEEEECCEEeccCCce--EEEc---cCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEE
Q psy10160 147 ISIPCDVDG-YPIPQVFWYKDGQVIENDGVH--YRIT---ESNRLHINQANATDSGEYRCVASNSYTSDENAVT 214 (558)
Q Consensus 147 v~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~--~~~~---~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 214 (558)
+.|.|.+.| .|.|.+.|+|++..+...... +.+. ..++|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 469999999 999999999999988754321 1121 2357999999999999999999999999877654
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=99.28 E-value=9e-11 Score=101.36 Aligned_cols=114 Identities=20% Similarity=0.353 Sum_probs=74.0
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEEeCCcccCCC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQTTTTTTEATS 92 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~~~~~~~~~~ 92 (558)
.+|.|.+++.+|+|.|+|.+.+..|... ...|.|..+
T Consensus 1 asL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~------------------------------------------ 38 (139)
T cd05771 1 ASLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEP------------------------------------------ 38 (139)
T ss_pred CeEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecC------------------------------------------
Confidence 3799999999999999999998766643 445555433
Q ss_pred CceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeecc-CC-CeEEEEECCEEe
Q psy10160 93 PHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGY-PI-PQVFWYKDGQVI 170 (558)
Q Consensus 93 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P~-p~i~W~~~g~~l 170 (558)
|.+...+......+|+.+.|.|.+.|. |. +.|.|++++...
T Consensus 39 -------------------------------------P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~ 81 (139)
T cd05771 39 -------------------------------------PRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGD 81 (139)
T ss_pred -------------------------------------CceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCC
Confidence 222233333334478899999999996 54 479999998542
Q ss_pred cc-----CCc---eEEEccCC------eEEEccCCCCCCeEEEEEEEeCC
Q psy10160 171 EN-----DGV---HYRITESN------RLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 171 ~~-----~~~---~~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
.. .+. ......++ .|.+..-..++.+.|+|.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 82 SPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred ccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 11 110 11122233 46665555556779999997753
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.7e-11 Score=95.03 Aligned_cols=81 Identities=16% Similarity=0.324 Sum_probs=64.8
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCC---ceEEEccCCeEEEccCCCCCCeEEEEEEEeCC-ceeeE
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG---VHYRITESNRLHINQANATDSGEYRCVASNSY-TSDEN 211 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~---~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~-G~~~~ 211 (558)
+....+.+|+.+.|.|.+.+ |.|.+.|+|++..+.... .++... .+.|.|.+++.+|+|.|.|.|.|.. +....
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~ 80 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT-EDGLLIRSVSPADAGVYTCQSVEHGFKQTLA 80 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc-CCCEEEccCCHHHCEEEEEEEecCccceeEe
Confidence 44567889999999999988 889999999998776542 344443 3569999999999999999999764 45567
Q ss_pred EEEEEEe
Q psy10160 212 AVTIRVE 218 (558)
Q Consensus 212 ~~~l~V~ 218 (558)
++.|.|.
T Consensus 81 ~~~l~V~ 87 (89)
T cd04979 81 TYSLNVL 87 (89)
T ss_pred EEEEEEe
Confidence 7888884
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.6e-11 Score=94.98 Aligned_cols=78 Identities=24% Similarity=0.455 Sum_probs=63.1
Q ss_pred ceEeeCCCcEEEEeEeec-----cCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEE
Q psy10160 138 TQVFGVGSDISIPCDVDG-----YPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENA 212 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g-----~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 212 (558)
.+.+.+|+.+.|.|...+ +|.|.+.|+|++.++.....++ ..++.|.|.++..+|+|.|+|.+.|..+.....
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~--~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~ 81 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF--VKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYN 81 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE--ecCCEEEEeeCChhhCEEEEEEEEecCCCEEEE
Confidence 456778999999998754 3678999999999987654332 267799999999999999999999999888665
Q ss_pred EEEEE
Q psy10160 213 VTIRV 217 (558)
Q Consensus 213 ~~l~V 217 (558)
++..+
T Consensus 82 ~t~t~ 86 (92)
T cd05757 82 VTRTI 86 (92)
T ss_pred EEEEE
Confidence 55444
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-11 Score=95.23 Aligned_cols=74 Identities=22% Similarity=0.354 Sum_probs=58.4
Q ss_pred CCcEEEEeEeecc--CCCeEEEEECCEEeccCCc---eEEE----ccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEE
Q psy10160 144 GSDISIPCDVDGY--PIPQVFWYKDGQVIENDGV---HYRI----TESNRLHINQANATDSGEYRCVASNSYTSDENAVT 214 (558)
Q Consensus 144 G~~v~L~C~~~g~--P~p~i~W~~~g~~l~~~~~---~~~~----~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 214 (558)
|+.+.|.|.+.|. |.|.+.|.+++..+..... +... ...++|.|.+++.+|+|.|+|.|.|..|..+.+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999999 8889999988765432110 1110 11247999999999999999999999999998888
Q ss_pred EEE
Q psy10160 215 IRV 217 (558)
Q Consensus 215 l~V 217 (558)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 876
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.6e-11 Score=92.80 Aligned_cols=79 Identities=25% Similarity=0.524 Sum_probs=63.6
Q ss_pred eEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEE---ccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEE
Q psy10160 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI---TESNRLHINQANATDSGEYRCVASNSYTSDENAVTI 215 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~---~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 215 (558)
..+..|+.+.|.|.+.+.|.|.+.|++++..+..+...... .....|.|.++..+|+|.|.|.+.|..|..+.++.|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 34568999999999999999999999999887643311111 112369999999999999999999999998888887
Q ss_pred EE
Q psy10160 216 RV 217 (558)
Q Consensus 216 ~V 217 (558)
+|
T Consensus 84 ~v 85 (85)
T cd05729 84 DV 85 (85)
T ss_pred eC
Confidence 64
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.4e-11 Score=94.56 Aligned_cols=80 Identities=16% Similarity=0.331 Sum_probs=58.9
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEecc-------CCceEEEcc----CCeEEEccCCCCCCeEEEEEEEe
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN-------DGVHYRITE----SNRLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~-------~~~~~~~~~----~~sL~I~~v~~~D~G~Y~C~a~N 204 (558)
..+..+.+|+++.|.|.+.|.|.|.+.|++++..+.. .+.++.+.. ..+|.|.+++.+|+|.|+|.+..
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 3467789999999999999999999999997753310 122444321 24899999999999999999988
Q ss_pred CCceeeEEEEEE
Q psy10160 205 SYTSDENAVTIR 216 (558)
Q Consensus 205 ~~G~~~~~~~l~ 216 (558)
.-..+...+|.
T Consensus 84 -~~~~~~~~~~~ 94 (95)
T cd05882 84 -MPVRTAKATVT 94 (95)
T ss_pred -eccccEEEEEE
Confidence 22334444443
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-11 Score=95.22 Aligned_cols=74 Identities=22% Similarity=0.380 Sum_probs=60.7
Q ss_pred CCceEeeCCCcEEEEeE-eeccCCCeEEEEECCEEe--ccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 136 LETQVFGVGSDISIPCD-VDGYPIPQVFWYKDGQVI--ENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~-~~g~P~p~i~W~~~g~~l--~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
.....+.+|+.+.|.|. -.|.|.|.+.|++++.++ ..+.+++....+|.|.|.+|+.+|+|.|+|.|+|.....
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 34566889999999996 688999999999998754 333445555558999999999999999999999987554
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.9e-11 Score=91.75 Aligned_cols=75 Identities=27% Similarity=0.450 Sum_probs=57.0
Q ss_pred CCcEEEEeEeeccCCCeEEEEECCEEeccCC-c--eEEEcc---CCeEEEccCCCCCCeEEEEEEEeCCc--eeeEEEEE
Q psy10160 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDG-V--HYRITE---SNRLHINQANATDSGEYRCVASNSYT--SDENAVTI 215 (558)
Q Consensus 144 G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~-~--~~~~~~---~~sL~I~~v~~~D~G~Y~C~a~N~~G--~~~~~~~l 215 (558)
|+.++|.|.+.|.|.|.+.|++.++...... . +..+.. ..+|.|.+++.+|+|.|+|.|.|..+ ..+.++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 7899999999999999999998775432111 0 111111 34799999999999999999999877 55777787
Q ss_pred EEe
Q psy10160 216 RVE 218 (558)
Q Consensus 216 ~V~ 218 (558)
.|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 773
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-11 Score=95.06 Aligned_cols=75 Identities=13% Similarity=0.298 Sum_probs=63.4
Q ss_pred cCCceEeeCCCcEEEEeE-eeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCe-EEEEEEEeCCcee
Q psy10160 135 TLETQVFGVGSDISIPCD-VDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSG-EYRCVASNSYTSD 209 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~-~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G-~Y~C~a~N~~G~~ 209 (558)
......|.+|+.+.|.|. ..|.|.|.|.|.+++...-..+.|+.+..+|+|.|.+|..+|+| .|.|.|.|.....
T Consensus 9 ~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 9 KIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred ccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccccc
Confidence 346677899999999997 79999999999987755434456888888899999999999999 8999999986443
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.3e-11 Score=89.96 Aligned_cols=68 Identities=28% Similarity=0.634 Sum_probs=53.7
Q ss_pred EEEEeEeec-cCCCeEEEEECCEEeccCC---ceEEEcc---CCeEEEccCCCCCCeEEEEEEEeCCceeeEEEE
Q psy10160 147 ISIPCDVDG-YPIPQVFWYKDGQVIENDG---VHYRITE---SNRLHINQANATDSGEYRCVASNSYTSDENAVT 214 (558)
Q Consensus 147 v~L~C~~~g-~P~p~i~W~~~g~~l~~~~---~~~~~~~---~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 214 (558)
+.|.|.+.+ .|.|.+.|+|+|..+.... .++.... .++|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999875 6889999999999886432 2233222 257999999999999999999999999887654
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.3e-11 Score=91.29 Aligned_cols=76 Identities=25% Similarity=0.422 Sum_probs=59.5
Q ss_pred cCCceEeeCCCcEEEEeEee-ccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee-eEE
Q psy10160 135 TLETQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD-ENA 212 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~-~~~ 212 (558)
.+....+.+|+.++|.|.+. +.|.+.+.|+|+|..+... ..+.+|.|.+++.+|+|.|+|.+.|..|.. +..
T Consensus 5 ~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~ 78 (83)
T cd05753 5 QVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS------HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEP 78 (83)
T ss_pred ECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc------CCCceEEECccCHHHCEEEEEEEEeCCceecCCC
Confidence 34455788999999999985 4667789999999876431 234689999999999999999999998865 344
Q ss_pred EEEE
Q psy10160 213 VTIR 216 (558)
Q Consensus 213 ~~l~ 216 (558)
+.|.
T Consensus 79 ~~i~ 82 (83)
T cd05753 79 VSIT 82 (83)
T ss_pred EEEE
Confidence 4444
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.8e-11 Score=110.30 Aligned_cols=151 Identities=14% Similarity=0.126 Sum_probs=97.1
Q ss_pred CceEeeCCCcEEEEeEeeccCCC-----------eEEEEECCEEe--ccCCce--------EE-EccCCeEEEccCCCCC
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIP-----------QVFWYKDGQVI--ENDGVH--------YR-ITESNRLHINQANATD 194 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p-----------~i~W~~~g~~l--~~~~~~--------~~-~~~~~sL~I~~v~~~D 194 (558)
.+..+.+|+++.|.|.+.++|.| .+.|+|++... ...+.+ .. ...+++|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 45667899999999999886644 79999988652 111111 00 1124689999999999
Q ss_pred CeEEEEEEEeCCceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccC--CCCCCCcccccch
Q psy10160 195 SGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTR--AGQLPSYGPHIKR 272 (558)
Q Consensus 195 ~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~--~g~~~~~~~w~~~ 272 (558)
+|.|+|.|.|..|....++.|.|..+. . +. . ...|....+.|..... .+.|.|.+.|+++
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~---~--------~~-~------~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKn 171 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDSGT---I--------NY-Q------FNSGKDSKLHCYGTDGISSTFKDYTLTWYKN 171 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEecCC---c--------cc-e------EecCCCEEEEeeCCCCccccCCCceEEEEEC
Confidence 999999999999988888888884221 0 00 1 1223334444542211 1456899999999
Q ss_pred hhhhhhhhh-hh-hhcccccchhhhhhhHHHhhcc
Q psy10160 273 AVEAEAAAA-DK-KRRSRRSLSVVNKWSLRQAFTT 305 (558)
Q Consensus 273 ~l~~~~~~~-~~-~~~grth~q~a~~~t~g~~~~~ 305 (558)
+..+....+ .. ...+......++....|.|...
T Consensus 172 g~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~ 206 (227)
T PHA02826 172 GNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCN 206 (227)
T ss_pred CEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEE
Confidence 876543321 11 1123566677777777766653
|
|
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.3e-10 Score=91.32 Aligned_cols=80 Identities=15% Similarity=0.269 Sum_probs=59.2
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCeEEEEECCEE--------eccCCceEEEc----cCCeEEEccCCCCCCeEEEEEEE
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQV--------IENDGVHYRIT----ESNRLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~--------l~~~~~~~~~~----~~~sL~I~~v~~~D~G~Y~C~a~ 203 (558)
+.+..+.+|+++.|+|.+.+.|.|.+.|++.+.. ... +.++... ...+|.|.+++.+|+|.|+|.+.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~-~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALR-DNRIELVRASWHELSISISDVSLSDEGQYTCSLF 82 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCccccc-CCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence 4567789999999999999999999999863321 112 2355442 22489999999999999999999
Q ss_pred eCCceeeEEEEEEE
Q psy10160 204 NSYTSDENAVTIRV 217 (558)
Q Consensus 204 N~~G~~~~~~~l~V 217 (558)
+..+. +....|.|
T Consensus 83 t~~~~-~~~~~l~v 95 (95)
T cd07701 83 TMPVK-TSKAYLTV 95 (95)
T ss_pred eecCc-cEEEEEEC
Confidence 85333 55555554
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-11 Score=83.98 Aligned_cols=55 Identities=53% Similarity=0.777 Sum_probs=48.9
Q ss_pred hhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhhcCcccccCC
Q psy10160 503 LVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 503 ~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 557 (558)
++|.|++.+||+.|.+++++|.++|++++|++.+.+.|++++++++|||..++++
T Consensus 1 laTaL~p~iGYe~aa~iAk~A~~~g~svre~v~~~g~lt~ee~d~ll~p~~mt~P 55 (55)
T PF10415_consen 1 LATALNPYIGYEKAAEIAKEALAEGRSVREVVLEEGLLTEEELDELLDPERMTNP 55 (55)
T ss_dssp GGGGGHHHHHHHHHHHHHHHHHHHT--HHHHHHHTTSS-HHHHHHHTSHHHHTT-
T ss_pred CeeeccchhccHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHcCHHHcCCc
Confidence 4689999999999999999999999999999999999999999999999998875
|
The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A .... |
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.6e-10 Score=82.00 Aligned_cols=63 Identities=33% Similarity=0.703 Sum_probs=53.1
Q ss_pred CCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 143 ~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
+|+.+.|.|.+.+.|.+.+.|++++..+.. . ......+..|.|.+++.+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~-~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE-S-NRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC-C-CEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 588999999999999999999999988762 2 22334556899999999999999999999765
|
|
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.7e-10 Score=87.53 Aligned_cols=79 Identities=22% Similarity=0.431 Sum_probs=60.6
Q ss_pred eEeeCCCcEEEEeE-eec----cCCCeEEEEECCEEeccCCceEEE-ccCCeEEEccCCCCCCeEEEEEEEeCCceee--
Q psy10160 139 QVFGVGSDISIPCD-VDG----YPIPQVFWYKDGQVIENDGVHYRI-TESNRLHINQANATDSGEYRCVASNSYTSDE-- 210 (558)
Q Consensus 139 ~~v~~G~~v~L~C~-~~g----~P~p~i~W~~~g~~l~~~~~~~~~-~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~-- 210 (558)
+.+.+|....|.|+ ..+ .+.|.+.|+|++.++...+.++.. .....|.|.+|..+|+|.|+|.+.|..|...
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~ 84 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYN 84 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEE
Confidence 45678999999998 333 467799999999998765545544 2345799999999999999999999976553
Q ss_pred --EEEEEEE
Q psy10160 211 --NAVTIRV 217 (558)
Q Consensus 211 --~~~~l~V 217 (558)
+.+.|.|
T Consensus 85 vtr~~~l~v 93 (95)
T cd05897 85 ITRIIKLRI 93 (95)
T ss_pred EEEEEEEEE
Confidence 4445544
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-09 Score=82.94 Aligned_cols=71 Identities=38% Similarity=0.709 Sum_probs=58.1
Q ss_pred eEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCc-eeeEEEEEEE
Q psy10160 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYT-SDENAVTIRV 217 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~V 217 (558)
..+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ..+.+.++..+|+|.|+|.+.|..+ ..+..+.|.|
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~--------~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ--------NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES--------SEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee--------eeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 557899999999999999999999999988776321 1277889999999999999999665 4456677665
|
... |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.9e-09 Score=84.08 Aligned_cols=78 Identities=17% Similarity=0.200 Sum_probs=59.1
Q ss_pred eEeeCCCcEEEEeEeeccCCCeEEEEECCE--Eec---cCCceEEEccCCeEEEccCCCCCCeEEEEEEE-eCCceeeEE
Q psy10160 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQ--VIE---NDGVHYRITESNRLHINQANATDSGEYRCVAS-NSYTSDENA 212 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~--~l~---~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~-N~~G~~~~~ 212 (558)
..+.+|+.+.|.|.. +.|.|.+.|+|.+. ... ..+.++.. .+++|.|.+++.+|+|.|+|.+. |..+.....
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~ 83 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH-TERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAK 83 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE-ecCeEEEeeCChhHCEEEEEEEEccCCeEEEEE
Confidence 446789999999996 58999999998432 211 11235543 44679999999999999999998 577767778
Q ss_pred EEEEEe
Q psy10160 213 VTIRVE 218 (558)
Q Consensus 213 ~~l~V~ 218 (558)
++|.|.
T Consensus 84 ~~l~v~ 89 (91)
T cd05871 84 YTLHVI 89 (91)
T ss_pred EEEEEe
Confidence 888874
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-09 Score=83.83 Aligned_cols=75 Identities=20% Similarity=0.329 Sum_probs=56.6
Q ss_pred CCcEEEEeEeeccCCC--eEEEEECCEEecc----CCceEEE----ccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEE
Q psy10160 144 GSDISIPCDVDGYPIP--QVFWYKDGQVIEN----DGVHYRI----TESNRLHINQANATDSGEYRCVASNSYTSDENAV 213 (558)
Q Consensus 144 G~~v~L~C~~~g~P~p--~i~W~~~g~~l~~----~~~~~~~----~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 213 (558)
|+++.|.|.+.+.|.| .+.|.+.+..... ...+... ...++|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 7899999999987655 5799887754321 1101111 1234799999999999999999999999988888
Q ss_pred EEEEe
Q psy10160 214 TIRVE 218 (558)
Q Consensus 214 ~l~V~ 218 (558)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 88884
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.4e-09 Score=84.88 Aligned_cols=81 Identities=15% Similarity=0.261 Sum_probs=58.5
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEe-c------cCCceEEEc----cCCeEEEccCCCCCCeEEEEEEEe
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVI-E------NDGVHYRIT----ESNRLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l-~------~~~~~~~~~----~~~sL~I~~v~~~D~G~Y~C~a~N 204 (558)
+....+.+|+++.|.|.+.+.|.|.+.|++.+..+ . ..+.+|.+. ...+|.|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 34667889999999999999999999998633211 0 112355542 234799999999999999999998
Q ss_pred CCceeeEEEEEEE
Q psy10160 205 SYTSDENAVTIRV 217 (558)
Q Consensus 205 ~~G~~~~~~~l~V 217 (558)
... .+..+.|.|
T Consensus 84 ~~~-~~~~~~~~v 95 (95)
T cd05717 84 MPV-QTAKATVTV 95 (95)
T ss_pred CCC-ceEEEEEEC
Confidence 753 355555543
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-08 Score=78.82 Aligned_cols=80 Identities=33% Similarity=0.716 Sum_probs=65.3
Q ss_pred CceEeeCCCcEEEEeEeeccCCCeEEEEEC-CEEeccCCceEEEccC---CeEEEccCCCCCCeEEEEEEEeCCceeeEE
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKD-GQVIENDGVHYRITES---NRLHINQANATDSGEYRCVASNSYTSDENA 212 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~---~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 212 (558)
....+..|+.+.|.|.+.+.+.+.+.|+++ +..+...+ ++..... .+|.|.++..+|+|.|.|.+.|..+.....
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESG-RFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCC-cEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 345678899999999999998899999998 77776333 4444443 589999999999999999999998888777
Q ss_pred EEEEE
Q psy10160 213 VTIRV 217 (558)
Q Consensus 213 ~~l~V 217 (558)
+.|.|
T Consensus 81 ~~l~V 85 (86)
T smart00409 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 77766
|
|
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-08 Score=78.82 Aligned_cols=80 Identities=33% Similarity=0.716 Sum_probs=65.3
Q ss_pred CceEeeCCCcEEEEeEeeccCCCeEEEEEC-CEEeccCCceEEEccC---CeEEEccCCCCCCeEEEEEEEeCCceeeEE
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKD-GQVIENDGVHYRITES---NRLHINQANATDSGEYRCVASNSYTSDENA 212 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~---~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 212 (558)
....+..|+.+.|.|.+.+.+.+.+.|+++ +..+...+ ++..... .+|.|.++..+|+|.|.|.+.|..+.....
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESG-RFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCC-cEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 345678899999999999998899999998 77776333 4444443 589999999999999999999998888777
Q ss_pred EEEEE
Q psy10160 213 VTIRV 217 (558)
Q Consensus 213 ~~l~V 217 (558)
+.|.|
T Consensus 81 ~~l~V 85 (86)
T smart00410 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 77766
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-08 Score=80.58 Aligned_cols=81 Identities=22% Similarity=0.440 Sum_probs=65.8
Q ss_pred ceEeeCCCcEEEEeEeeccCCCe-EEEEECCEEeccCCce-EEEcc------CCeEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIPQ-VFWYKDGQVIENDGVH-YRITE------SNRLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p~-i~W~~~g~~l~~~~~~-~~~~~------~~sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
...|.+|+.+.|.|.+.++|+|. +.|.+++..+...... +.... .+.|.+.+++.+|.|.|+|.|.|..+..
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 45688999999999999999998 9999988765433221 11111 1369999999999999999999999999
Q ss_pred eEEEEEEEe
Q psy10160 210 ENAVTIRVE 218 (558)
Q Consensus 210 ~~~~~l~V~ 218 (558)
+.++.|.|+
T Consensus 92 s~tF~l~v~ 100 (101)
T cd05860 92 SVTFNVYVN 100 (101)
T ss_pred EEEEEEEEe
Confidence 999998874
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.2e-09 Score=81.83 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=52.5
Q ss_pred EeeCCCcEEEEeEeeccCCCeEEEEECCEEe-ccC------------CceEEEc----cC--CeEEEccCCCCCCeEEEE
Q psy10160 140 VFGVGSDISIPCDVDGYPIPQVFWYKDGQVI-END------------GVHYRIT----ES--NRLHINQANATDSGEYRC 200 (558)
Q Consensus 140 ~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l-~~~------------~~~~~~~----~~--~sL~I~~v~~~D~G~Y~C 200 (558)
.+.+|+.|+|.|.+.+.|.+.+.|++++... ... ..++... .+ .+|+|.+++.+|+|+|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 4678999999999999999999999766332 110 0111111 11 269999999999999999
Q ss_pred EEEeCCceee
Q psy10160 201 VASNSYTSDE 210 (558)
Q Consensus 201 ~a~N~~G~~~ 210 (558)
.+.|..+..+
T Consensus 83 ~v~~~~~~~~ 92 (94)
T cd07690 83 EVEDKKEEVE 92 (94)
T ss_pred EECCccceEE
Confidence 9999877653
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.7e-09 Score=77.19 Aligned_cols=59 Identities=37% Similarity=0.693 Sum_probs=45.0
Q ss_pred CCcEEEEeEe-eccCCCeEEEEECCEEeccCCceEEEccCCe----EEEccCCCCCCeEEEEEE
Q psy10160 144 GSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESNR----LHINQANATDSGEYRCVA 202 (558)
Q Consensus 144 G~~v~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~s----L~I~~v~~~D~G~Y~C~a 202 (558)
|+.+.|.|.+ .+.|.+.+.|++++..............+.. |.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 7778889999999876554321222222222 999999999999999986
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-08 Score=77.06 Aligned_cols=69 Identities=16% Similarity=0.319 Sum_probs=51.9
Q ss_pred cEEEEeEe-eccCCCeEEEEECCEEeccCC------ceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee---eEEEEE
Q psy10160 146 DISIPCDV-DGYPIPQVFWYKDGQVIENDG------VHYRITESNRLHINQANATDSGEYRCVASNSYTSD---ENAVTI 215 (558)
Q Consensus 146 ~v~L~C~~-~g~P~p~i~W~~~g~~l~~~~------~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~---~~~~~l 215 (558)
.+.|+|.. .|+|.|.|.|+|++.++.... +.|. ..++|.|.....+|.+.|+|+|.|..+.. .....|
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t--~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l 78 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVS--VSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSL 78 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEE--EEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEE
Confidence 36899996 568999999999999996421 1111 23479999999999999999999988754 344444
Q ss_pred E
Q psy10160 216 R 216 (558)
Q Consensus 216 ~ 216 (558)
.
T Consensus 79 ~ 79 (80)
T cd05885 79 D 79 (80)
T ss_pred e
Confidence 4
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-08 Score=80.52 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=61.0
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCE-----Ee----c---------cCCceEEEccCCeEEEccCCCCCC
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ-----VI----E---------NDGVHYRITESNRLHINQANATDS 195 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~-----~l----~---------~~~~~~~~~~~~sL~I~~v~~~D~ 195 (558)
+.+.+..+.+|+++.|.|.....+...+.|+|... .+ + ....|..+..+++|.|.+++.+|+
T Consensus 3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~ 82 (105)
T cd05774 3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDT 82 (105)
T ss_pred EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccC
Confidence 44556677899999999976433344799999621 11 1 012466677789999999999999
Q ss_pred eEEEEEEEeCCc-eeeEEEEEEE
Q psy10160 196 GEYRCVASNSYT-SDENAVTIRV 217 (558)
Q Consensus 196 G~Y~C~a~N~~G-~~~~~~~l~V 217 (558)
|.|+|.+.|... .....+.|.|
T Consensus 83 G~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 83 GFYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred EEEEEEEEeCCccEEEEEEEEEC
Confidence 999999999874 4456666654
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-08 Score=76.65 Aligned_cols=72 Identities=22% Similarity=0.547 Sum_probs=50.8
Q ss_pred cEEEEeEeec-cCCCeEEEEECCEEeccCCceEEEccC-------CeEEEccCCCCCCeEEEEEEEeCCcee--eEEEEE
Q psy10160 146 DISIPCDVDG-YPIPQVFWYKDGQVIENDGVHYRITES-------NRLHINQANATDSGEYRCVASNSYTSD--ENAVTI 215 (558)
Q Consensus 146 ~v~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~-------~sL~I~~v~~~D~G~Y~C~a~N~~G~~--~~~~~l 215 (558)
.+.|.|.+.| +|.|.++|+|+|..+...........+ +.|.|.....+|.|.|+|.|.|..... ..+++|
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 3689999987 699999999999987543211111122 257788777888999999999976444 455555
Q ss_pred EE
Q psy10160 216 RV 217 (558)
Q Consensus 216 ~V 217 (558)
+|
T Consensus 81 ~v 82 (82)
T cd05759 81 DV 82 (82)
T ss_pred cC
Confidence 43
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-08 Score=77.54 Aligned_cols=73 Identities=27% Similarity=0.563 Sum_probs=50.7
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeeccC-CCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEe
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDGYP-IPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g~P-~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N 204 (558)
|.+...+.......+. +.|.|.+.+.| .+.+.|+ ................+++|.|.++..+|.|.|+|.|.|
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 5555555555554444 99999999988 7889999 211111111122233456899999999999999999998
|
... |
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.1e-08 Score=75.06 Aligned_cols=77 Identities=21% Similarity=0.479 Sum_probs=59.4
Q ss_pred CceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee--eEEEE
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD--ENAVT 214 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~--~~~~~ 214 (558)
....+.+|+.+.|.|...+. .+.+.|++++..+..+. ++.....| |.|.+++.+|+|.|.|.+. ..|.. ...+.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~-r~~~~~~G-LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y~ 79 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQF-SYRVGTDG-LLILVTSPEHSGTYRCYSE-EEGFQQLVASYS 79 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCc-ceEEeCCC-CEEEECCHhhCEEEEEEEe-cCCCeEEEEEEE
Confidence 35678899999999999885 66999999999987654 66555555 7789999999999999987 33444 35555
Q ss_pred EEE
Q psy10160 215 IRV 217 (558)
Q Consensus 215 l~V 217 (558)
|.|
T Consensus 80 l~v 82 (85)
T cd05872 80 LNV 82 (85)
T ss_pred EEE
Confidence 554
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.8e-08 Score=75.69 Aligned_cols=79 Identities=25% Similarity=0.398 Sum_probs=58.1
Q ss_pred ceEeeCCCcEEEEeEee------cc-----CCCeEEEEECCEEeccCC------ceEEEccCCeEEEccCCCCCCeEEEE
Q psy10160 138 TQVFGVGSDISIPCDVD------GY-----PIPQVFWYKDGQVIENDG------VHYRITESNRLHINQANATDSGEYRC 200 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~------g~-----P~p~i~W~~~g~~l~~~~------~~~~~~~~~sL~I~~v~~~D~G~Y~C 200 (558)
...+.+|+++.|.|... ++ +...+.|+|++..+.... .|.. ..+..|.|.++..+|+|.|+|
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~-~~~~~Lwf~Pa~~eDSG~Y~C 87 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMS-KEEDSIWFRPAELQDSGLYTC 87 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEE-EeCCEEEEEeCChhhCeEEEE
Confidence 35578999999999861 11 234799999975554422 1322 245689999999999999999
Q ss_pred EEEeCCceeeEEEEEEE
Q psy10160 201 VASNSYTSDENAVTIRV 217 (558)
Q Consensus 201 ~a~N~~G~~~~~~~l~V 217 (558)
++.|.......++.|+|
T Consensus 88 ~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 88 VLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EECCCCcceEEEEEEEC
Confidence 99999877777776654
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.9e-07 Score=72.66 Aligned_cols=68 Identities=16% Similarity=0.270 Sum_probs=52.5
Q ss_pred CceEeeCCCcEEEEeEeeccCCCeEEEEECCEEec-------cCCceEEEcc-CC---eEEEccCCCCCCeEEEEEEEe
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIE-------NDGVHYRITE-SN---RLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~-------~~~~~~~~~~-~~---sL~I~~v~~~D~G~Y~C~a~N 204 (558)
++..+.+|+++.|+|.+.+.+...+.|++.+..+- ..+.||.... ++ +|.|.+++.+|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 46778999999999999998777788887664331 1234666544 22 699999999999999999875
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.9e-08 Score=75.80 Aligned_cols=73 Identities=15% Similarity=0.321 Sum_probs=53.7
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeC
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
|.+...+ ..+|.+|+.|+|.|... .|.+.+.|+|+|....... .......+.+.|.+|+.+|+|.|+|...|.
T Consensus 3 P~L~a~p-~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 3 PSLWAEP-SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CEEEecC-CCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 4444544 34678999999999886 6777899999987544211 001122347999999999999999999986
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.2e-07 Score=75.04 Aligned_cols=77 Identities=22% Similarity=0.396 Sum_probs=57.5
Q ss_pred CCCcEEEEeEeeccC------CCeEEEEECCE----E---e-cc---------CCceEEEcc----CCeEEEccCCCCCC
Q psy10160 143 VGSDISIPCDVDGYP------IPQVFWYKDGQ----V---I-EN---------DGVHYRITE----SNRLHINQANATDS 195 (558)
Q Consensus 143 ~G~~v~L~C~~~g~P------~p~i~W~~~g~----~---l-~~---------~~~~~~~~~----~~sL~I~~v~~~D~ 195 (558)
.|+.++|.|.....| ...|.|+|... . + .. -..|+.+.. +.+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999987764 34699998531 1 1 10 012444422 24799999999999
Q ss_pred eEEEEEEEeCCceeeEEEEEEEec
Q psy10160 196 GEYRCVASNSYTSDENAVTIRVEG 219 (558)
Q Consensus 196 G~Y~C~a~N~~G~~~~~~~l~V~~ 219 (558)
|.|.|.+.|..+.....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999999999999999965
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-07 Score=74.59 Aligned_cols=74 Identities=19% Similarity=0.273 Sum_probs=55.3
Q ss_pred CCcEEEEeEeeccCCCeEEEEECCEEec-----------------cCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 144 GSDISIPCDVDGYPIPQVFWYKDGQVIE-----------------NDGVHYRITESNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 144 G~~v~L~C~~~g~P~p~i~W~~~g~~l~-----------------~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
|++|+|.|.....+...+.|+++..... .-..|+.+..+++|.|.+++.+|+|.|.|.+.+..
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 7899999998876677899998653211 01235566667899999999999999999999887
Q ss_pred cee-eEEEEEEE
Q psy10160 207 TSD-ENAVTIRV 217 (558)
Q Consensus 207 G~~-~~~~~l~V 217 (558)
|.. ...+.|.|
T Consensus 81 ~~~~~~~~~l~v 92 (92)
T cd05741 81 GVTENAKFFLRV 92 (92)
T ss_pred CcEEEEEEEEEC
Confidence 544 45555543
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.9e-07 Score=73.50 Aligned_cols=77 Identities=26% Similarity=0.551 Sum_probs=56.3
Q ss_pred CCCcEEEEeEeeccC------CCeEEEEECC-----E-Ee-c-cCC---------ceEEE----ccCCeEEEccCCCCCC
Q psy10160 143 VGSDISIPCDVDGYP------IPQVFWYKDG-----Q-VI-E-NDG---------VHYRI----TESNRLHINQANATDS 195 (558)
Q Consensus 143 ~G~~v~L~C~~~g~P------~p~i~W~~~g-----~-~l-~-~~~---------~~~~~----~~~~sL~I~~v~~~D~ 195 (558)
.|+.++|.|.....| .+.|.|+|.. . .+ . .++ .+... ..+.+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999988764 4579999862 1 11 0 111 11111 1234899999999999
Q ss_pred eEEEEEEEeCCceeeEEEEEEEec
Q psy10160 196 GEYRCVASNSYTSDENAVTIRVEG 219 (558)
Q Consensus 196 G~Y~C~a~N~~G~~~~~~~l~V~~ 219 (558)
|.|.|.+.|..+.....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999988888999999865
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.6e-07 Score=73.21 Aligned_cols=77 Identities=23% Similarity=0.457 Sum_probs=57.1
Q ss_pred CCCcEEEEeEeeccC------------CCeEEEEECC--E---Eec-c---------CCceEEEc------cCCeEEEcc
Q psy10160 143 VGSDISIPCDVDGYP------------IPQVFWYKDG--Q---VIE-N---------DGVHYRIT------ESNRLHINQ 189 (558)
Q Consensus 143 ~G~~v~L~C~~~g~P------------~p~i~W~~~g--~---~l~-~---------~~~~~~~~------~~~sL~I~~ 189 (558)
.|++++|.|.....+ .+.|.|+|.. . .+. . -..|+.+. .+.+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999987543 4589999842 1 110 0 01245443 245899999
Q ss_pred CCCCCCeEEEEEEEeCCceeeEEEEEEEec
Q psy10160 190 ANATDSGEYRCVASNSYTSDENAVTIRVEG 219 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 219 (558)
++.+|+|.|.|.+.+........+.|.|.+
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999999888888999998875
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.9e-07 Score=74.99 Aligned_cols=73 Identities=25% Similarity=0.429 Sum_probs=54.5
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCCeEEEEECCE---E---ec-------cCCceEEEcc-----CCeEEEccCCCCCCe
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ---V---IE-------NDGVHYRITE-----SNRLHINQANATDSG 196 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~---~---l~-------~~~~~~~~~~-----~~sL~I~~v~~~D~G 196 (558)
.+....+.+|+++.|.|.+.+.+.+.+.|+|... + +. ....++.+.. ..+|.|.+++.+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG 83 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA 83 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence 4567788999999999999988888999998431 0 00 1123554432 237999999999999
Q ss_pred EEEEEEEeCCc
Q psy10160 197 EYRCVASNSYT 207 (558)
Q Consensus 197 ~Y~C~a~N~~G 207 (558)
.|.|.+.+..+
T Consensus 84 ~Y~C~~~~~~~ 94 (109)
T cd04983 84 VYFCALSESGG 94 (109)
T ss_pred EEEEEEecCCC
Confidence 99999997643
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-06 Score=71.63 Aligned_cols=81 Identities=22% Similarity=0.298 Sum_probs=54.2
Q ss_pred CCceEeeCCCcEEEEeEeecc----CCCeEEEEE---------------CCEEeccC-C---ceEEEc-----cCCeEEE
Q psy10160 136 LETQVFGVGSDISIPCDVDGY----PIPQVFWYK---------------DGQVIEND-G---VHYRIT-----ESNRLHI 187 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~----P~p~i~W~~---------------~g~~l~~~-~---~~~~~~-----~~~sL~I 187 (558)
+.+..+..|+.+.|.|..... +...+.|.+ +|...... + .|.... .+.+|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 445677899999999998764 345799943 33332211 1 133322 2358999
Q ss_pred ccCCCCCCeEEEEEEEeCCceee--EEEEEE
Q psy10160 188 NQANATDSGEYRCVASNSYTSDE--NAVTIR 216 (558)
Q Consensus 188 ~~v~~~D~G~Y~C~a~N~~G~~~--~~~~l~ 216 (558)
.+++.+|+|.|+|.+.|.-+... ..+.|.
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~ 115 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPDIVGKSSQVTLY 115 (116)
T ss_pred ccCCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence 99999999999999999866443 344443
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.2e-06 Score=70.70 Aligned_cols=74 Identities=23% Similarity=0.422 Sum_probs=51.5
Q ss_pred CCcEEEEeEeeccCC---CeEEEEECCE--Ee---------cc--C---CceEEEcc------CCeEEEccCCCCCCeEE
Q psy10160 144 GSDISIPCDVDGYPI---PQVFWYKDGQ--VI---------EN--D---GVHYRITE------SNRLHINQANATDSGEY 198 (558)
Q Consensus 144 G~~v~L~C~~~g~P~---p~i~W~~~g~--~l---------~~--~---~~~~~~~~------~~sL~I~~v~~~D~G~Y 198 (558)
|+++.|.|....... ..+.|+|... .+ .. . ..|+.+.. +.+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 788999999864322 2477877541 11 10 0 12443321 24799999999999999
Q ss_pred EEEEEeCCceeeEEEEEEE
Q psy10160 199 RCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 199 ~C~a~N~~G~~~~~~~l~V 217 (558)
.|.+.|..+..+..+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998888888888877
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-06 Score=72.07 Aligned_cols=72 Identities=18% Similarity=0.402 Sum_probs=53.0
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCE--Ee---------------ccCCceEEEcc----CCeEEEccCCC
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ--VI---------------ENDGVHYRITE----SNRLHINQANA 192 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~--~l---------------~~~~~~~~~~~----~~sL~I~~v~~ 192 (558)
..|....+.+|++++|.|.+.+ +.+.+.|+|... .. .....++.... ..+|.|.+++.
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~ 81 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP 81 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence 3456778899999999999988 778899998531 11 01123454322 23799999999
Q ss_pred CCCeEEEEEEEeCC
Q psy10160 193 TDSGEYRCVASNSY 206 (558)
Q Consensus 193 ~D~G~Y~C~a~N~~ 206 (558)
+|+|.|.|.+.+..
T Consensus 82 ~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 82 EDSAVYLCASSLGG 95 (110)
T ss_pred hhCEEEEEEeeCCC
Confidence 99999999998754
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.4e-06 Score=69.73 Aligned_cols=76 Identities=14% Similarity=0.312 Sum_probs=54.6
Q ss_pred eCCCcEEEEeEeec-cCCCeEEEEECCEEecc-------C---------CceEEEccC-CeEEEccCCCCCCeEEEEEEE
Q psy10160 142 GVGSDISIPCDVDG-YPIPQVFWYKDGQVIEN-------D---------GVHYRITES-NRLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 142 ~~G~~v~L~C~~~g-~P~p~i~W~~~g~~l~~-------~---------~~~~~~~~~-~sL~I~~v~~~D~G~Y~C~a~ 203 (558)
..|++|+|.|.... .....+.|+|....+.. . ..|+.+..+ .+|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 36999999998755 44456999986432210 0 024444443 689999999999999999999
Q ss_pred eCCcee-eEEEEEEE
Q psy10160 204 NSYTSD-ENAVTIRV 217 (558)
Q Consensus 204 N~~G~~-~~~~~l~V 217 (558)
+..|.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 988766 46677766
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.1e-07 Score=68.99 Aligned_cols=40 Identities=15% Similarity=0.375 Sum_probs=35.4
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCC
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALP 51 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p 51 (558)
.+++|.|.+++.+|+|.|+|.|.|..+... ++.|.|.++|
T Consensus 45 ~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~pP 85 (85)
T cd05853 45 SAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGPP 85 (85)
T ss_pred CCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecCC
Confidence 457899999999999999999999998874 7888888765
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.9e-06 Score=68.23 Aligned_cols=73 Identities=21% Similarity=0.309 Sum_probs=51.8
Q ss_pred CcEEEEeEeeccC---CCeEEEEECCEE----e-----------cc-CCceEEEc----cCCeEEEccCCCCCCeEEEEE
Q psy10160 145 SDISIPCDVDGYP---IPQVFWYKDGQV----I-----------EN-DGVHYRIT----ESNRLHINQANATDSGEYRCV 201 (558)
Q Consensus 145 ~~v~L~C~~~g~P---~p~i~W~~~g~~----l-----------~~-~~~~~~~~----~~~sL~I~~v~~~D~G~Y~C~ 201 (558)
+.++|.|.....+ ...|.|+|.... + .. ...|.... .+.+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4789999987765 346999985421 0 00 01132222 245899999999999999999
Q ss_pred EEe-CCceeeEEEEEEE
Q psy10160 202 ASN-SYTSDENAVTIRV 217 (558)
Q Consensus 202 a~N-~~G~~~~~~~l~V 217 (558)
+.+ ..|.....+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 976 6788888888877
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.8e-06 Score=68.31 Aligned_cols=77 Identities=25% Similarity=0.522 Sum_probs=56.5
Q ss_pred CCCcEEEEeEeeccCC----------CeEEEEECC--EEec----cC---------CceEEEc------cCCeEEEccCC
Q psy10160 143 VGSDISIPCDVDGYPI----------PQVFWYKDG--QVIE----ND---------GVHYRIT------ESNRLHINQAN 191 (558)
Q Consensus 143 ~G~~v~L~C~~~g~P~----------p~i~W~~~g--~~l~----~~---------~~~~~~~------~~~sL~I~~v~ 191 (558)
.|+.++|.|.....+. ..|.|+|.. +... .+ ..|+.+. .+.+|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 3899999999877552 459999852 1110 00 1244442 23479999999
Q ss_pred CCCCeEEEEEEEeCCceeeEEEEEEEec
Q psy10160 192 ATDSGEYRCVASNSYTSDENAVTIRVEG 219 (558)
Q Consensus 192 ~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 219 (558)
.+|+|.|.|.+.......+..+.|.|.+
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999999888888999999865
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.5e-06 Score=72.76 Aligned_cols=122 Identities=18% Similarity=0.153 Sum_probs=69.4
Q ss_pred ceEeeCCCcEEEEeEeec---cCCCeEEEEECCE----E-ec-----------cCCceEEE---ccCCeEEEccCCCCCC
Q psy10160 138 TQVFGVGSDISIPCDVDG---YPIPQVFWYKDGQ----V-IE-----------NDGVHYRI---TESNRLHINQANATDS 195 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g---~P~p~i~W~~~g~----~-l~-----------~~~~~~~~---~~~~sL~I~~v~~~D~ 195 (558)
...+..|+.+.|+|.-.. .+.-.|.|+|.+. . +. ....++.+ ..+-+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 445678999999998652 2444699999431 1 11 11123333 2334799999999999
Q ss_pred eEEEEEEEeCCceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhh
Q psy10160 196 GEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAV 274 (558)
Q Consensus 196 G~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l 274 (558)
|+|+|...-........-+|.+..|. ++.+...-..+.. ......+|...|.|+|.+.|+.+.-
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V~~~--------------~Lsv~a~~~dFp~-~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVVKPL--------------TLSVHSERSQFPD-FSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeeeecc--------------eEEEEeccccCCC-CCeeEEEEecCCcCCchheeccccC
Confidence 99999998765444333333332110 0000000000000 0111145667799999999999853
|
|
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.4e-06 Score=69.83 Aligned_cols=73 Identities=18% Similarity=0.319 Sum_probs=52.0
Q ss_pred EecCCceEeeCCCcEEEEeEeeccC-CCeEEEEECC--E---Eec--------cCCceEEEccC---CeEEEccCCCCCC
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYP-IPQVFWYKDG--Q---VIE--------NDGVHYRITES---NRLHINQANATDS 195 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P-~p~i~W~~~g--~---~l~--------~~~~~~~~~~~---~sL~I~~v~~~D~ 195 (558)
...|....+.+|++++|.|.+.+.+ ...+.|+|.. . .+. ....++....+ .+|.|.+++.+|+
T Consensus 4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds 83 (106)
T cd04980 4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA 83 (106)
T ss_pred EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence 3456677889999999999998766 5679999742 1 110 01124544332 2699999999999
Q ss_pred eEEEEEEEeC
Q psy10160 196 GEYRCVASNS 205 (558)
Q Consensus 196 G~Y~C~a~N~ 205 (558)
|.|.|.+.+.
T Consensus 84 g~Y~Ca~~~~ 93 (106)
T cd04980 84 AVYYCQQYGT 93 (106)
T ss_pred EEEEEEEeCC
Confidence 9999998764
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.6e-06 Score=69.53 Aligned_cols=68 Identities=24% Similarity=0.405 Sum_probs=49.9
Q ss_pred EeeCCCcEEEEeEeecc-CCCeEEEEECCE-----Eec-----------cCCceEEEcc-----CCeEEEccCCCCCCeE
Q psy10160 140 VFGVGSDISIPCDVDGY-PIPQVFWYKDGQ-----VIE-----------NDGVHYRITE-----SNRLHINQANATDSGE 197 (558)
Q Consensus 140 ~v~~G~~v~L~C~~~g~-P~p~i~W~~~g~-----~l~-----------~~~~~~~~~~-----~~sL~I~~v~~~D~G~ 197 (558)
.+.+|+.++|.|.+.+. +.+.+.|+|... .+. ....++.+.. ..+|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46789999999999987 677899998432 110 0122444332 2279999999999999
Q ss_pred EEEEEEeCCc
Q psy10160 198 YRCVASNSYT 207 (558)
Q Consensus 198 Y~C~a~N~~G 207 (558)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999998775
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.8e-06 Score=67.39 Aligned_cols=77 Identities=23% Similarity=0.442 Sum_probs=55.3
Q ss_pred CCCcEEEEeEeeccC-------CCeEEEEECC-----EEe----ccC---------CceEEEcc------CCeEEEccCC
Q psy10160 143 VGSDISIPCDVDGYP-------IPQVFWYKDG-----QVI----END---------GVHYRITE------SNRLHINQAN 191 (558)
Q Consensus 143 ~G~~v~L~C~~~g~P-------~p~i~W~~~g-----~~l----~~~---------~~~~~~~~------~~sL~I~~v~ 191 (558)
.|+.+.|.|...-.| .|.|.|.|.. ... ..+ ..|..+.. +.+|.|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 378999999966433 3679999741 111 011 12444422 3489999999
Q ss_pred CCCCeEEEEEEEeCCceeeEEEEEEEec
Q psy10160 192 ATDSGEYRCVASNSYTSDENAVTIRVEG 219 (558)
Q Consensus 192 ~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 219 (558)
.+|+|.|.|.+.......+..+.|.|.+
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999887778999999865
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.9e-06 Score=61.95 Aligned_cols=72 Identities=13% Similarity=0.290 Sum_probs=49.0
Q ss_pred EEEEeEeec-cCCCeEEEEECCEEeccCCceEEEcc-----CCeEEEccCCCCCCeEEEEEEEeCCce-eeEEEEEEEe
Q psy10160 147 ISIPCDVDG-YPIPQVFWYKDGQVIENDGVHYRITE-----SNRLHINQANATDSGEYRCVASNSYTS-DENAVTIRVE 218 (558)
Q Consensus 147 v~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~-----~~sL~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~ 218 (558)
+.|.|.+.| .|.+.|.|++++.++........... .++|.|..-..+|...|+|+|.|+.-. ...+..|.|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 689999765 68889999999999865321100111 136888666666677999999997532 3566666664
|
Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.5e-06 Score=66.27 Aligned_cols=77 Identities=17% Similarity=0.374 Sum_probs=54.5
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeec-cCCCe--EEEEECCEEeccCCceEEE------ccCCeEEEccCCCCCCe-EEE
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDG-YPIPQ--VFWYKDGQVIENDGVHYRI------TESNRLHINQANATDSG-EYR 199 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g-~P~p~--i~W~~~g~~l~~~~~~~~~------~~~~sL~I~~v~~~D~G-~Y~ 199 (558)
..+.+.+.+..+.+|+.++|.|.+.| .|.+. |.|+|++..+.... +.. ....+|.+. +.++|.| .|+
T Consensus 2 ~~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~--~~~~~~~~~~~~stlt~~-~~r~D~g~~~s 78 (100)
T cd05755 2 DSVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQP--FGDNTKSPVNAPATITIT-VDREDHGANFS 78 (100)
T ss_pred ceEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccce--eccccCCCceeEEEEEEe-cchhhCCcEEE
Confidence 34566677777899999999999876 67776 79999999886431 111 112356665 4455555 999
Q ss_pred EEEEeCCcee
Q psy10160 200 CVASNSYTSD 209 (558)
Q Consensus 200 C~a~N~~G~~ 209 (558)
|+|.+..+..
T Consensus 79 C~A~l~l~~~ 88 (100)
T cd05755 79 CETELDLRPE 88 (100)
T ss_pred EEEEeccCcc
Confidence 9999976554
|
Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. |
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.2e-05 Score=65.72 Aligned_cols=76 Identities=22% Similarity=0.501 Sum_probs=55.6
Q ss_pred CCcEEEEeEeeccCC-----------CeEEEEEC-----CE-----Ee-c-cC---------CceEEEc------cCCeE
Q psy10160 144 GSDISIPCDVDGYPI-----------PQVFWYKD-----GQ-----VI-E-ND---------GVHYRIT------ESNRL 185 (558)
Q Consensus 144 G~~v~L~C~~~g~P~-----------p~i~W~~~-----g~-----~l-~-~~---------~~~~~~~------~~~sL 185 (558)
|++++|.|...-.|. +.|.|++- +. .+ . .+ ..|..+. .+.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 688999999886552 36999874 11 11 0 01 1133332 23589
Q ss_pred EEccCCCCCCeEEEEEEEeCCceeeEEEEEEEec
Q psy10160 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219 (558)
Q Consensus 186 ~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 219 (558)
.|.+++.+|+|.|.|.+.+........+.|.|.+
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999999999999999999999975
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.1e-06 Score=67.89 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=49.1
Q ss_pred CCceEeeCCCcEEEEeEeeccC----CCeEEEEECCE------Ee-c-------c-CCce----EEEcc-----CCeEEE
Q psy10160 136 LETQVFGVGSDISIPCDVDGYP----IPQVFWYKDGQ------VI-E-------N-DGVH----YRITE-----SNRLHI 187 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P----~p~i~W~~~g~------~l-~-------~-~~~~----~~~~~-----~~sL~I 187 (558)
|....+.+|+.++|.|...... ...+.|++... .+ . . ...+ +.+.. +.+|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4566788999999999886542 24599986321 11 0 0 1112 22222 247999
Q ss_pred ccCCCCCCeEEEEEEEeCCce
Q psy10160 188 NQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 188 ~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
.+++.+|+|.|.|.+.|.-+.
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCC
Confidence 999999999999999987553
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.4e-06 Score=68.21 Aligned_cols=73 Identities=18% Similarity=0.262 Sum_probs=49.3
Q ss_pred CCceEeeCCCcEEEEeEeeccC----CCeEEEEEC----CEE--ec---c-----CC----ceEEEc-----cCCeEEEc
Q psy10160 136 LETQVFGVGSDISIPCDVDGYP----IPQVFWYKD----GQV--IE---N-----DG----VHYRIT-----ESNRLHIN 188 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P----~p~i~W~~~----g~~--l~---~-----~~----~~~~~~-----~~~sL~I~ 188 (558)
+....+.+|+.+.|.|.....+ .+.|.|++. +.+ +. . .. .|+... .+.+|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4566788999999999976543 235999752 111 10 0 01 122221 23479999
Q ss_pred cCCCCCCeEEEEEEEeCCce
Q psy10160 189 QANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 189 ~v~~~D~G~Y~C~a~N~~G~ 208 (558)
+++.+|+|.|.|.+.|..+.
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred eCChhhCEEEEEEEEeCCCC
Confidence 99999999999999997664
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) [] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.2e-06 Score=67.31 Aligned_cols=58 Identities=34% Similarity=0.536 Sum_probs=46.0
Q ss_pred hhhHhhhhhcccc-cChHHHHHHH----HHHHHcCCCHHHHHHHc----CCCCHHHHhhhcCcccccCC
Q psy10160 498 HESLMLVTALNPH-IGYDKAAKIA----KTAHKEGTTLKVAALKL----GYLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 498 ~~~~~~~~~la~~-l~~~~a~~~~----~~a~~~~~~~~~~~~~~----~~l~~~~~~~~~~p~~~~~~ 557 (558)
++.+|+ +|++. +|+++||+++ ++|.++|.+|+|.+.++ ..|++++|+++|||..|+|.
T Consensus 6 SE~v~~--~L~~~G~gR~~Ah~lv~~~a~~a~~~~~~l~e~l~~d~~i~~~ls~~el~~l~dp~~ylg~ 72 (81)
T PF10397_consen 6 SERVML--ALAEKGLGRQEAHELVQEAAMEAWENGRDLREVLLADPEIAAYLSEEELEELFDPESYLGN 72 (81)
T ss_dssp HHHHHH--HHHHTTH-HHHHHHHHHHHHHHHHHTTS-HHHHHCTTHHHHTTSHHHHHHHHT-GGGGCTT
T ss_pred HHHHHH--HHHHHccCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHhHCCHHHHHhhcCHHHHHhh
Confidence 456664 78887 9999999865 46778999999999864 67999999999999999985
|
This entry represents the C-terminal, seven alpha-helical, domain of adenylosuccinate lyase [].; PDB: 1YIS_A 1C3U_B 1C3C_A 3C8T_A 2PFM_B 1RE5_D 1Q5N_A 2VD6_D 2J91_B 2X75_A. |
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.9e-06 Score=63.84 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=34.2
Q ss_pred CCceEe-cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEE
Q psy10160 6 SENYEL-NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVT 46 (558)
Q Consensus 6 ~~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~ 46 (558)
..|+.+ .+++|.|.+++.+|+|.|+|.|.|..|... ++.|+
T Consensus 30 ~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 30 NSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred CCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 456765 678999999999999999999999999875 44544
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.3e-05 Score=64.52 Aligned_cols=72 Identities=24% Similarity=0.449 Sum_probs=49.5
Q ss_pred cEEEEeEeeccC---CCeEEEEECCE-----Ee---cc-CC--------ceEEEc-----cCCeEEEccCCCCCCeEEEE
Q psy10160 146 DISIPCDVDGYP---IPQVFWYKDGQ-----VI---EN-DG--------VHYRIT-----ESNRLHINQANATDSGEYRC 200 (558)
Q Consensus 146 ~v~L~C~~~g~P---~p~i~W~~~g~-----~l---~~-~~--------~~~~~~-----~~~sL~I~~v~~~D~G~Y~C 200 (558)
+++|.|.....+ ...+.|+|... .+ .. .+ .|.... .+.+|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 688999886544 33689998321 11 00 00 122222 14589999999999999999
Q ss_pred EEEe-CCceeeEEEEEEE
Q psy10160 201 VASN-SYTSDENAVTIRV 217 (558)
Q Consensus 201 ~a~N-~~G~~~~~~~l~V 217 (558)
.+.| +.|..+..+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9998 6777778888877
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-05 Score=62.39 Aligned_cols=62 Identities=13% Similarity=0.338 Sum_probs=42.6
Q ss_pred EEEEeEeec-cCCCeEEEEECCEEeccCCceEEEc-cCC------eEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 147 ISIPCDVDG-YPIPQVFWYKDGQVIENDGVHYRIT-ESN------RLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 147 v~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~-~~~------sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
+.|.|.+.| +|.|.+.|++++.++.... ..... .++ .|.+.....+|.+.|+|.|.|.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 689999976 4999999999999886432 11111 122 35554455566779999999976543
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel |
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=98.17 E-value=3e-06 Score=73.05 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=52.3
Q ss_pred eEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCC
Q psy10160 184 RLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQL 263 (558)
Q Consensus 184 sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~ 263 (558)
+|.|.+++.+|+|.|.|.+.|..|.....++|.|..+| .....+ ....... +......|.+.|..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P---~v~~~~---~~~~~~~---------~~~~~L~C~a~g~~ 66 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPP---RVRLSL---EKLVSMI---------EEPQTLICHIAGYY 66 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCC---ceEEeC---CCceeec---------CCcEEEEEEECCCC
Confidence 69999999999999999999999999999999997543 221111 1111101 22223566676764
Q ss_pred CC--cccccchhhh
Q psy10160 264 PS--YGPHIKRAVE 275 (558)
Q Consensus 264 ~~--~~~w~~~~l~ 275 (558)
|+ .+.|++++..
T Consensus 67 P~~~~i~W~~~g~~ 80 (139)
T cd05771 67 PLDVQVEWTREPPG 80 (139)
T ss_pred CCCeEEEEEECCCC
Confidence 43 6899999754
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.2e-06 Score=69.09 Aligned_cols=70 Identities=19% Similarity=0.442 Sum_probs=50.8
Q ss_pred cCCceEeeCCCcEEEEeEeec--cCCCeEEEEECC--EEe------c----------cCCceEEEcc-----CCeEEEcc
Q psy10160 135 TLETQVFGVGSDISIPCDVDG--YPIPQVFWYKDG--QVI------E----------NDGVHYRITE-----SNRLHINQ 189 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g--~P~p~i~W~~~g--~~l------~----------~~~~~~~~~~-----~~sL~I~~ 189 (558)
.|....+.+|+.++|.|.+.+ .+.+.+.|+|.. ... . ....++.+.. ..+|.|.+
T Consensus 4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 83 (116)
T cd04982 4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN 83 (116)
T ss_pred cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence 355667889999999999988 678889999842 110 0 0123554432 23699999
Q ss_pred CCCCCCeEEEEEEEe
Q psy10160 190 ANATDSGEYRCVASN 204 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N 204 (558)
++.+|+|.|.|.+..
T Consensus 84 ~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 84 LEKEDSATYYCAYWE 98 (116)
T ss_pred CCHHHCEEEEEEEec
Confidence 999999999998864
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.5e-06 Score=65.64 Aligned_cols=40 Identities=28% Similarity=0.364 Sum_probs=34.0
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCC
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALP 51 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p 51 (558)
..++|.|.+++.+|+|.|+|.|.|..|... ++.|.|..+|
T Consensus 45 ~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~P 85 (85)
T cd05854 45 TIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGPP 85 (85)
T ss_pred eEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECCC
Confidence 357999999999999999999999999875 6777776543
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.9e-05 Score=59.99 Aligned_cols=76 Identities=18% Similarity=0.354 Sum_probs=53.3
Q ss_pred ceEeeCCCcEEEEeEeeccCCC--eEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEE
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIP--QVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTI 215 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 215 (558)
+..+..|++++|+|.....+.| .|.|...+...... ......+|.+.++...|+|+.+|.++-..-.....+.+
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~----~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V 83 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI----LNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDI 83 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee----ccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeE
Confidence 3456789999999998664554 89998765432211 11244589999999999999999997554444455555
Q ss_pred EE
Q psy10160 216 RV 217 (558)
Q Consensus 216 ~V 217 (558)
.|
T Consensus 84 ~V 85 (88)
T cd07694 84 KV 85 (88)
T ss_pred EE
Confidence 55
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=98.15 E-value=1e-05 Score=66.85 Aligned_cols=84 Identities=23% Similarity=0.430 Sum_probs=56.1
Q ss_pred ecCCceEeeCCCcEEEEeEee-ccCCCeEEEEECCE-----Eec---cC----------CceEEEccC-----CeEEEcc
Q psy10160 134 ITLETQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQ-----VIE---ND----------GVHYRITES-----NRLHINQ 189 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~-g~P~p~i~W~~~g~-----~l~---~~----------~~~~~~~~~-----~sL~I~~ 189 (558)
..+....+.+|+.+.|.|... ......+.|++... .+. .. ..++.+..+ .+|.|.+
T Consensus 6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~ 85 (114)
T PF07686_consen 6 QPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN 85 (114)
T ss_dssp EEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred EeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence 346677889999999999998 45566799998321 111 00 112222222 2699999
Q ss_pred CCCCCCeEEEEEEEeCC-ceeeEEEEEEE
Q psy10160 190 ANATDSGEYRCVASNSY-TSDENAVTIRV 217 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N~~-G~~~~~~~l~V 217 (558)
++.+|+|.|.|.+.... ......+.|.|
T Consensus 86 l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 86 LQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp ESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 99999999999999872 23345555554
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=98.15 E-value=4e-06 Score=63.41 Aligned_cols=41 Identities=32% Similarity=0.381 Sum_probs=32.2
Q ss_pred CCceEe---cCC--eEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEE
Q psy10160 6 SENYEL---NKN--MLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVT 46 (558)
Q Consensus 6 ~~r~~~---~~~--~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~ 46 (558)
++|+.+ .++ +|.|.+++.+|+|.|+|.|.|..|... ++.|.
T Consensus 28 ~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05892 28 TDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD 74 (75)
T ss_pred CCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence 456664 222 799999999999999999999999875 44544
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=98.15 E-value=3e-05 Score=61.96 Aligned_cols=72 Identities=19% Similarity=0.337 Sum_probs=50.0
Q ss_pred cEEEEeEeecc-CCC---eEEEEECC--E--Eec--c-------C---CceEEEcc----CCeEEEccCCCCCCeEEEEE
Q psy10160 146 DISIPCDVDGY-PIP---QVFWYKDG--Q--VIE--N-------D---GVHYRITE----SNRLHINQANATDSGEYRCV 201 (558)
Q Consensus 146 ~v~L~C~~~g~-P~p---~i~W~~~g--~--~l~--~-------~---~~~~~~~~----~~sL~I~~v~~~D~G~Y~C~ 201 (558)
.+.|.|..... |.. .|.|.+.. . .+. . . ..|..... +.+|.|.+++.+|+|.|.|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 57899998742 222 48998742 1 110 0 0 12333221 36899999999999999999
Q ss_pred EEe-CCceeeEEEEEEE
Q psy10160 202 ASN-SYTSDENAVTIRV 217 (558)
Q Consensus 202 a~N-~~G~~~~~~~l~V 217 (558)
+.| +.|+.+..+.|.|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 999 7888888888887
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.8e-06 Score=86.14 Aligned_cols=203 Identities=16% Similarity=0.187 Sum_probs=110.9
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeC--CcceE--EEEEEEEeCCCCccCC----CCccccCce-eEEec-cCCCCCCcEE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNG--LGRAV--SWTVTLQALPSEKVAD----PNAIDYGTI-LSSAF-PSESASPVVT 81 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~--~g~~~--s~~l~V~~~p~~~~~~----~~~v~~~~~-~~~~~-~~~~p~p~v~ 81 (558)
....|.+...+.+|.|.|+|.|.|. .+... ...+.+.......... .+.+..+.. .+.|. ..++|.+.++
T Consensus 161 ~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~ 240 (741)
T KOG3515|consen 161 EPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQT 240 (741)
T ss_pred cccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhh
Confidence 3557889999999999999999984 22222 3333333322222111 133445543 35554 4446999999
Q ss_pred EEeCCcccCCCCceeec-----cccce---------eeceeEEeeccceeeEEeeeceee-eCcEEEecCCceEeeCCCc
Q psy10160 82 QTTTTTTEATSPHVYAA-----LTHCV---------PWSNVCLFGARSGYLKETQNGGYL-VPVKVNITLETQVFGVGSD 146 (558)
Q Consensus 82 W~~~~~~~~~~~~~~~g-----~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~v~~G~~ 146 (558)
|+++......+...... .+... .....|.+.+. ...+....+. .+....+.+....+..|+.
T Consensus 241 w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~---~~~~~~tav~~~~~~~~Ist~~~~ls~g~s 317 (741)
T KOG3515|consen 241 WYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNL---LAASQITAVQVKPTAVPISTSDSGLSSGRS 317 (741)
T ss_pred hccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccCc---cccceeeecccccccccccCcccccccccc
Confidence 99987555443111100 00000 11123554441 0001111111 2223334444555778999
Q ss_pred EEEEeE-eeccCCCeEEEEECCEEeccCCceEEEccC------CeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 147 ISIPCD-VDGYPIPQVFWYKDGQVIENDGVHYRITES------NRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 147 v~L~C~-~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~------~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
..+.|. ..++|.+.+.|+|+......+..-.+-..+ ..+......+.|.|.|+|.+.|.......+....+
T Consensus 318 ~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l 395 (741)
T KOG3515|consen 318 ARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLL 395 (741)
T ss_pred cccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceec
Confidence 999987 566788889999965544322111111111 14566677889999999999998865544433333
|
|
| >cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.3e-05 Score=60.54 Aligned_cols=63 Identities=17% Similarity=0.350 Sum_probs=43.5
Q ss_pred EEEEeEeecc-CCCeEEEEECCEEeccCCceEEEccC-C------eEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 147 ISIPCDVDGY-PIPQVFWYKDGQVIENDGVHYRITES-N------RLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 147 v~L~C~~~g~-P~p~i~W~~~g~~l~~~~~~~~~~~~-~------sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
+.|.|.+.|. |.+.|+|+++|.++...........+ + +|.|.....+|...|+|.+.+.....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 6899999874 99999999999987653211222222 2 35554555667789999999976443
|
Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.8e-06 Score=64.48 Aligned_cols=39 Identities=28% Similarity=0.419 Sum_probs=33.4
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPS 52 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~ 52 (558)
.+|.|.++..+|+|.|+|.|.|..|... ++.|.|...|.
T Consensus 47 s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P~ 86 (88)
T cd05735 47 STLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPD 86 (88)
T ss_pred EEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCCC
Confidence 5799999999999999999999999874 67777776543
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.8e-06 Score=61.90 Aligned_cols=42 Identities=31% Similarity=0.291 Sum_probs=34.2
Q ss_pred CceEecCCeEEEcCCCCCCCEEEEEEEEeCCcce-EEEEEEEE
Q psy10160 7 ENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQ 48 (558)
Q Consensus 7 ~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~s~~l~V~ 48 (558)
.++...+++|.|.+++.+|+|.|+|.|.|..|.. .+.++.|.
T Consensus 28 ~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 28 NRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4555677899999999999999999999999875 35555553
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.3e-06 Score=65.20 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=33.9
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCC
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALP 51 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p 51 (558)
.+++|.|.+++.+|+|.|+|.|.|..|... ++.|.|..+|
T Consensus 45 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~pP 85 (85)
T cd04970 45 SNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGPP 85 (85)
T ss_pred ccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECCC
Confidence 467899999999999999999999998764 6777776654
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd00098 IgC Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=1e-05 Score=64.56 Aligned_cols=67 Identities=18% Similarity=0.434 Sum_probs=48.3
Q ss_pred eCCCcEEEEeEeecc-CC-CeEEEEECCEEeccCCc--eEEEccCC------eEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 142 GVGSDISIPCDVDGY-PI-PQVFWYKDGQVIENDGV--HYRITESN------RLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 142 ~~G~~v~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~--~~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
..|+.+.|.|.+.|. |. +.++|+++|..+..... ......++ .|.+.....+|.|.|+|.|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 468999999999998 64 57999999998865431 11112223 3666666667999999999987654
|
IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.9e-06 Score=62.99 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=32.0
Q ss_pred CCceEec-C--C--eEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEE
Q psy10160 6 SENYELN-K--N--MLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVT 46 (558)
Q Consensus 6 ~~r~~~~-~--~--~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~ 46 (558)
+.|+.+. + + +|.|.+++.+|+|.|+|.|.|..|... ++.|.
T Consensus 28 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05893 28 TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD 74 (75)
T ss_pred CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence 4566652 2 2 699999999999999999999999875 44443
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.3e-05 Score=64.39 Aligned_cols=66 Identities=21% Similarity=0.324 Sum_probs=46.9
Q ss_pred EeeCCCcEEEEeEeecc--CCCeEEEEECCE--Ee---c--------cCCceEEEccC---CeEEEccCCCCCCeEEEEE
Q psy10160 140 VFGVGSDISIPCDVDGY--PIPQVFWYKDGQ--VI---E--------NDGVHYRITES---NRLHINQANATDSGEYRCV 201 (558)
Q Consensus 140 ~v~~G~~v~L~C~~~g~--P~p~i~W~~~g~--~l---~--------~~~~~~~~~~~---~sL~I~~v~~~D~G~Y~C~ 201 (558)
.+.+|++++|.|...+. ....+.|+|... .. - ....++....+ .+|.|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46789999999998775 556799998431 11 0 00124554333 2699999999999999999
Q ss_pred EEeC
Q psy10160 202 ASNS 205 (558)
Q Consensus 202 a~N~ 205 (558)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 8753
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.8e-06 Score=60.56 Aligned_cols=37 Identities=27% Similarity=0.252 Sum_probs=30.8
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQ 48 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~ 48 (558)
.++.|.|.++..+|+|.|+|.|.|..|... +.+++|.
T Consensus 32 ~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 32 RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 456899999999999999999999999764 5555554
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.7e-06 Score=60.14 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=30.5
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQ 48 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~ 48 (558)
.++.|.|.++..+|+|.|+|.|.|..|... +..++|.
T Consensus 29 ~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 29 SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 456999999999999999999999999753 5555553
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=98.07 E-value=8e-06 Score=61.20 Aligned_cols=38 Identities=34% Similarity=0.444 Sum_probs=31.3
Q ss_pred EecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEE
Q psy10160 10 ELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTL 47 (558)
Q Consensus 10 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V 47 (558)
...+++|.|.+++.+|+|.|+|.|.|..|... ++.|.|
T Consensus 32 ~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 32 LNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred EcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 34678999999999999999999999999864 444443
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.6e-05 Score=60.34 Aligned_cols=73 Identities=16% Similarity=0.312 Sum_probs=50.4
Q ss_pred CcEEEEeEeeccC-CCeEEEEECCE----Eec-c---C--------CceEEEc----cCCeEEEccCCCCCCeEEEEEEE
Q psy10160 145 SDISIPCDVDGYP-IPQVFWYKDGQ----VIE-N---D--------GVHYRIT----ESNRLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 145 ~~v~L~C~~~g~P-~p~i~W~~~g~----~l~-~---~--------~~~~~~~----~~~sL~I~~v~~~D~G~Y~C~a~ 203 (558)
+.++|.|.....+ ...+.|.|... .+. . . ..|.... .+.+|.|.+++.+|+|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 4689999976533 23589988421 111 0 0 1133331 24589999999999999999976
Q ss_pred e-CCceeeEEEEEEE
Q psy10160 204 N-SYTSDENAVTIRV 217 (558)
Q Consensus 204 N-~~G~~~~~~~l~V 217 (558)
+ +.|+...++.|.|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 4 6888899998887
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.1e-05 Score=61.36 Aligned_cols=40 Identities=23% Similarity=0.428 Sum_probs=33.4
Q ss_pred ceEecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEE
Q psy10160 8 NYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTL 47 (558)
Q Consensus 8 r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V 47 (558)
++...+++|.|.+++.+|+|.|+|.|.|..|... ++.|.|
T Consensus 35 ~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 35 RRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred eEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 5667788999999999999999999999999874 444443
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.4e-05 Score=63.02 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=34.8
Q ss_pred CceEe--cCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEe
Q psy10160 7 ENYEL--NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQA 49 (558)
Q Consensus 7 ~r~~~--~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~ 49 (558)
.++.+ .+++|.|.+++.+|+|.|+|.|.|..|...+..+.|.+
T Consensus 46 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 46 PRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred CCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 44543 45699999999999999999999999988766666544
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.2e-05 Score=63.53 Aligned_cols=43 Identities=30% Similarity=0.420 Sum_probs=34.4
Q ss_pred CceEe-cCC---eEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEe
Q psy10160 7 ENYEL-NKN---MLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQA 49 (558)
Q Consensus 7 ~r~~~-~~~---~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~ 49 (558)
.|+.+ .++ +|.|.+++.+|+|.|+|.|.|..|......+.+.+
T Consensus 45 ~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 45 QRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 91 (92)
T ss_pred CCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 45654 233 89999999999999999999999987666666553
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=98.01 E-value=1e-05 Score=61.14 Aligned_cols=36 Identities=36% Similarity=0.479 Sum_probs=30.3
Q ss_pred ecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEE
Q psy10160 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVT 46 (558)
Q Consensus 11 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~ 46 (558)
..+++|.|.+++.+|+|.|+|.|.|..|... ++.|.
T Consensus 37 ~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 73 (74)
T cd05745 37 LSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLT 73 (74)
T ss_pred ccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence 4678999999999999999999999999864 44443
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.7e-05 Score=63.56 Aligned_cols=40 Identities=30% Similarity=0.384 Sum_probs=34.9
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCC
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPS 52 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~ 52 (558)
.+.|.|.++..+|+|.|+|.|.|..|... ++.|.|...|.
T Consensus 55 ~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P~ 95 (98)
T cd05762 55 SSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKPD 95 (98)
T ss_pred eeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCCC
Confidence 56899999999999999999999999875 77777776654
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.5e-05 Score=81.67 Aligned_cols=209 Identities=17% Similarity=0.095 Sum_probs=115.8
Q ss_pred ccccC-ceeEEeccCCCC-CCcEEEEeCCcccCCCCc-------eeeccccceeeceeEEeeccceeeE-EeeeceeeeC
Q psy10160 60 AIDYG-TILSSAFPSESA-SPVVTQTTTTTTEATSPH-------VYAALTHCVPWSNVCLFGARSGYLK-ETQNGGYLVP 129 (558)
Q Consensus 60 ~v~~~-~~~~~~~~~~~p-~p~v~W~~~~~~~~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p 129 (558)
.+..| ++.+.|.+.++| .+.+.|++.+..+..... +..+........+.|.+.+..+... ......+..|
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~ 97 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYP 97 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCcccccccccccCCceeeecchhhhhhhhhhhhcccccCceecceeeccccC
Confidence 45555 455888887765 567999998766651110 1111111111122344443322222 1122233345
Q ss_pred cEEEecCCceEeeCCCcEEEEeEe--eccCCCeEEEEECCEEeccCC-ceEEE---------ccCCeEEEccCCCCCCeE
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDV--DGYPIPQVFWYKDGQVIENDG-VHYRI---------TESNRLHINQANATDSGE 197 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~--~g~P~p~i~W~~~g~~l~~~~-~~~~~---------~~~~sL~I~~v~~~D~G~ 197 (558)
+.-...........+..+.+.|.+ .+.|.+.+.|..++....... ..... .....+.+.....+|.|+
T Consensus 98 pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~ 177 (741)
T KOG3515|consen 98 PACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGN 177 (741)
T ss_pred ccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCce
Confidence 554444445555678999999954 556777899999876543221 00000 123357888888999999
Q ss_pred EEEEEEeC---CceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhh
Q psy10160 198 YRCVASNS---YTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAV 274 (558)
Q Consensus 198 Y~C~a~N~---~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l 274 (558)
|+|.|.|. .+.......+.|..+....... . ....+.+..+.+..++| ... .|.|.+...|+++..
T Consensus 178 ~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~--~-------~~~~qsF~~g~~inlvc-~~~-gg~P~~~~~w~~~s~ 246 (741)
T KOG3515|consen 178 YTCPANNRNSPGLSFAKQLTIIVEAPCKGIGIT--G-------AQEQQSFTEGQTINLVC-NAQ-GGNPSQQQTWYKDSR 246 (741)
T ss_pred eEcccccccCccccccceeEeecccccccceec--c-------hhhcCcccccceEEEEe-hhh-cCCcchhhhhccccc
Confidence 99999994 4444455556664332111111 0 01113344444556666 232 489999999999876
Q ss_pred hhhhh
Q psy10160 275 EAEAA 279 (558)
Q Consensus 275 ~~~~~ 279 (558)
.....
T Consensus 247 ~~~~~ 251 (741)
T KOG3515|consen 247 PQSES 251 (741)
T ss_pred cchhh
Confidence 65543
|
|
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.5e-05 Score=59.31 Aligned_cols=35 Identities=34% Similarity=0.547 Sum_probs=29.8
Q ss_pred CceE-ecCCeEEEcCCCCCCCEEEEEEEEeCCcceE
Q psy10160 7 ENYE-LNKNMLTIKRVEPERLGAYTCQAYNGLGRAV 41 (558)
Q Consensus 7 ~r~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 41 (558)
.++. ..+++|.|.+++.+|+|.|+|.|.|..|...
T Consensus 27 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 62 (69)
T cd05725 27 GRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIE 62 (69)
T ss_pred CcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEE
Confidence 3444 3667999999999999999999999999864
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.3e-05 Score=59.80 Aligned_cols=42 Identities=29% Similarity=0.249 Sum_probs=32.8
Q ss_pred CceEecCCeEEEcCCCCCCCEEEEEEEEeCCcce-EEEEEEEE
Q psy10160 7 ENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQ 48 (558)
Q Consensus 7 ~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~s~~l~V~ 48 (558)
.++...+++|.|.+++.+|+|.|+|.|+|..... ....+++.
T Consensus 29 ~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~~ 71 (72)
T cd07702 29 SRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITLI 71 (72)
T ss_pred cEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEEE
Confidence 4666777899999999999999999999975443 35555543
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.5e-05 Score=62.58 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=33.0
Q ss_pred ceEecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEE
Q psy10160 8 NYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTL 47 (558)
Q Consensus 8 r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V 47 (558)
++...++.|.|.+++.+|+|.|+|.|.|..|... ++.|.|
T Consensus 47 ~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 87 (88)
T cd05851 47 EISMSGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYV 87 (88)
T ss_pred EEecCCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence 4556778999999999999999999999999864 455544
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=97.98 E-value=2e-05 Score=59.50 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=34.1
Q ss_pred CCceEe-cCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEE
Q psy10160 6 SENYEL-NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48 (558)
Q Consensus 6 ~~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~ 48 (558)
+.++.. .+++|.|.+++.+|+|.|+|.|.|..|...+....|.
T Consensus 29 ~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~ 72 (74)
T cd05738 29 NGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLY 72 (74)
T ss_pred CCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEE
Confidence 345554 5679999999999999999999999998765444443
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.2e-05 Score=62.37 Aligned_cols=65 Identities=18% Similarity=0.335 Sum_probs=45.5
Q ss_pred ceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccC--CceEEEccCCeEEEccCCCCCCeEEEEEEE
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEND--GVHYRITESNRLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~--~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~ 203 (558)
..+|.+|++|+|.|.... +.-.+.|+|+|...... .....-.....+.|.+++.+|+|.|.|...
T Consensus 9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 456789999999998765 45579999988653221 000000012368999999999999999875
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.5e-05 Score=60.16 Aligned_cols=74 Identities=23% Similarity=0.353 Sum_probs=50.6
Q ss_pred CCcEEEEeEeeccCCC-eEEEEECCE----Eec---c-C--------CceEEEc----cCCeEEEccCCCCCCeEEEEEE
Q psy10160 144 GSDISIPCDVDGYPIP-QVFWYKDGQ----VIE---N-D--------GVHYRIT----ESNRLHINQANATDSGEYRCVA 202 (558)
Q Consensus 144 G~~v~L~C~~~g~P~p-~i~W~~~g~----~l~---~-~--------~~~~~~~----~~~sL~I~~v~~~D~G~Y~C~a 202 (558)
|++++|.|........ .+.|+|... .+. . . ..++... .+.+|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 7899999986654433 499998432 110 0 0 1122221 2347999999999999999998
Q ss_pred Ee-CCceeeEEEEEEE
Q psy10160 203 SN-SYTSDENAVTIRV 217 (558)
Q Consensus 203 ~N-~~G~~~~~~~l~V 217 (558)
.+ +.|.....+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 74 5777778888877
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=97.94 E-value=2e-05 Score=59.70 Aligned_cols=31 Identities=29% Similarity=0.316 Sum_probs=27.1
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCCcceE-EEEE
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGLGRAV-SWTV 45 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l 45 (558)
+|.|.+++.+|+|.|+|.|.|..|... ++.|
T Consensus 42 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 73 (75)
T cd05744 42 CLLIQNANKEDAGWYTVSAVNEAGVVSCNARL 73 (75)
T ss_pred EEEECCCCcccCEEEEEEEEcCCCcEEEEEEE
Confidence 699999999999999999999999864 3443
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.5e-05 Score=59.94 Aligned_cols=42 Identities=31% Similarity=0.457 Sum_probs=34.0
Q ss_pred CCceEe-cCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEE
Q psy10160 6 SENYEL-NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47 (558)
Q Consensus 6 ~~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V 47 (558)
+.|+.. .+++|.|.+++.+|+|.|+|.|.|..|...+..+.|
T Consensus 35 ~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 35 AGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred CCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 345553 678999999999999999999999999875555444
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.7e-05 Score=59.37 Aligned_cols=37 Identities=38% Similarity=0.508 Sum_probs=30.1
Q ss_pred ecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEE
Q psy10160 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTL 47 (558)
Q Consensus 11 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V 47 (558)
..+++|.|.+++.+|+|.|+|.|.|..|... ++.+.|
T Consensus 33 ~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 33 NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 3557999999999999999999999999763 444443
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.5e-05 Score=58.38 Aligned_cols=62 Identities=15% Similarity=0.357 Sum_probs=42.0
Q ss_pred EEEEeEeec-cCCCeEEEEECCEEeccCCceEEE-ccC------CeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 147 ISIPCDVDG-YPIPQVFWYKDGQVIENDGVHYRI-TES------NRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 147 v~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~-~~~------~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
+.|.|.+.| +|.+.++|+|+|..+......... ..+ .+|.+..-..+|...|+|++.|..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 689999987 688889999999987543211111 111 24666555566677999999986533
|
Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition. |
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.3e-05 Score=63.54 Aligned_cols=72 Identities=22% Similarity=0.358 Sum_probs=51.0
Q ss_pred ecCCceEeeCCCcEEEEeEeecc-CCCeEEEEECC--EE---ec--------cCCceEEEcc-----CCeEEEccCCCCC
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGY-PIPQVFWYKDG--QV---IE--------NDGVHYRITE-----SNRLHINQANATD 194 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~-P~p~i~W~~~g--~~---l~--------~~~~~~~~~~-----~~sL~I~~v~~~D 194 (558)
..+....+.+|++++|.|..... ....+.|+|.. .. +. ....|+.+.. ..+|.|.+++.+|
T Consensus 4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D 83 (116)
T cd07706 4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED 83 (116)
T ss_pred EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence 34567778999999999998764 45569999832 11 10 1124665532 2379999999999
Q ss_pred CeEEEEEEEeC
Q psy10160 195 SGEYRCVASNS 205 (558)
Q Consensus 195 ~G~Y~C~a~N~ 205 (558)
+|.|.|.+.+.
T Consensus 84 sg~Y~C~~~~~ 94 (116)
T cd07706 84 SAKYFCALSTL 94 (116)
T ss_pred CEEEEEEEECC
Confidence 99999998853
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00013 Score=63.81 Aligned_cols=84 Identities=14% Similarity=0.297 Sum_probs=60.6
Q ss_pred ceEeeCCCcEEEEeEee-ccCCCeEEEEECCEEec---cC--------CceEEE-c---cCCeEEEccCCCCCCeEEEEE
Q psy10160 138 TQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIE---ND--------GVHYRI-T---ESNRLHINQANATDSGEYRCV 201 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~-g~P~p~i~W~~~g~~l~---~~--------~~~~~~-~---~~~sL~I~~v~~~D~G~Y~C~ 201 (558)
...|.+|+.++|.|... +...+.+.|.|....+. .. ..|+.. . .+.+|+|.+|+.+|+|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 45678999999999974 66778899999643221 00 123332 1 235799999999999999998
Q ss_pred EEe-CCc-eeeEEEEEEEeccC
Q psy10160 202 ASN-SYT-SDENAVTIRVEGIF 221 (558)
Q Consensus 202 a~N-~~G-~~~~~~~l~V~~~~ 221 (558)
..- +.| ..+...-|.|....
T Consensus 104 F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEecCCCCCceeEEEEEEEchh
Confidence 875 346 66788889997543
|
|
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.1e-05 Score=60.28 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=30.4
Q ss_pred CceEecCCeEEEcCCCCCCCEEEEEEEEeCCcce
Q psy10160 7 ENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA 40 (558)
Q Consensus 7 ~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 40 (558)
.++.+.+++|.|.+++.+|+|.|+|.|.|..|..
T Consensus 38 ~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~ 71 (79)
T cd04973 38 NRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSD 71 (79)
T ss_pred ceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcc
Confidence 4677778899999999999999999999998875
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.7e-05 Score=59.32 Aligned_cols=39 Identities=31% Similarity=0.538 Sum_probs=32.3
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeC
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQAL 50 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~ 50 (558)
.+++|.|.+++.+|+|.|+|.|.|..|... +..++|.+.
T Consensus 36 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 36 KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 356899999999999999999999999874 456666553
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.7e-05 Score=60.66 Aligned_cols=44 Identities=25% Similarity=0.423 Sum_probs=35.4
Q ss_pred CCceEe-cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEe
Q psy10160 6 SENYEL-NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQA 49 (558)
Q Consensus 6 ~~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~ 49 (558)
..|+.. .+++|.|.+++.+|+|.|+|.|.|..|... ++.|.|..
T Consensus 38 ~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 83 (90)
T cd05726 38 SSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTD 83 (90)
T ss_pred CCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEee
Confidence 346665 467999999999999999999999999874 55666554
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.8e-05 Score=58.19 Aligned_cols=41 Identities=27% Similarity=0.439 Sum_probs=32.0
Q ss_pred CceEe--cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEE
Q psy10160 7 ENYEL--NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTL 47 (558)
Q Consensus 7 ~r~~~--~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V 47 (558)
.|+.. .++.|.|.+++.+|+|.|+|.|.|..|... ++.|.|
T Consensus 31 ~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 31 RRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred cceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 34443 457999999999999999999999999763 444443
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.7e-05 Score=61.12 Aligned_cols=68 Identities=22% Similarity=0.364 Sum_probs=47.7
Q ss_pred eEeeCCCcEEEEeEeec-cCCCeEEEEECCEE-----e-------ccCCceEEEcc-----CCeEEEccCCCCCCeEEEE
Q psy10160 139 QVFGVGSDISIPCDVDG-YPIPQVFWYKDGQV-----I-------ENDGVHYRITE-----SNRLHINQANATDSGEYRC 200 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g-~P~p~i~W~~~g~~-----l-------~~~~~~~~~~~-----~~sL~I~~v~~~D~G~Y~C 200 (558)
..+.+|++++|.|.... .+...+.|+|.... + .....++.+.. ..+|.|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 35678999999999765 35567899985421 1 11123454432 1279999999999999999
Q ss_pred EEEeCC
Q psy10160 201 VASNSY 206 (558)
Q Consensus 201 ~a~N~~ 206 (558)
.+.+..
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 887754
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.6e-05 Score=58.74 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=32.0
Q ss_pred CceEe-cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEE
Q psy10160 7 ENYEL-NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVT 46 (558)
Q Consensus 7 ~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~ 46 (558)
.++.+ .+++|.|.+++.+|+|.|+|.|.|..|... +..|.
T Consensus 31 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (73)
T cd04969 31 SRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS 72 (73)
T ss_pred CCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence 35554 457899999999999999999999999874 44443
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.5e-05 Score=62.92 Aligned_cols=35 Identities=31% Similarity=0.474 Sum_probs=30.2
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEE
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTL 47 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V 47 (558)
.+.|.|.+++.+|+|.|+|.|.|..|... ++.|.|
T Consensus 54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V 89 (90)
T cd04974 54 SEVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV 89 (90)
T ss_pred cceEEEeccccccCcEEEEEeecccCcccCCEEEEe
Confidence 46899999999999999999999999874 566655
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.9e-05 Score=57.73 Aligned_cols=35 Identities=29% Similarity=0.522 Sum_probs=30.3
Q ss_pred CceEe-cCCeEEEcCCCCCCCEEEEEEEEeCCcceE
Q psy10160 7 ENYEL-NKNMLTIKRVEPERLGAYTCQAYNGLGRAV 41 (558)
Q Consensus 7 ~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 41 (558)
.++.+ .+++|.|.+++.+|+|.|+|.|.|..|...
T Consensus 28 ~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 63 (69)
T cd05746 28 GKFHISPEGYLAIRDVGVADQGRYECVARNTIGYAS 63 (69)
T ss_pred CCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEE
Confidence 45554 478999999999999999999999999864
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.4e-05 Score=62.10 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=32.6
Q ss_pred CceEecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEE
Q psy10160 7 ENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVT 46 (558)
Q Consensus 7 ~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~ 46 (558)
.|+...+++|.|.+++.+|+|.|+|.++|..|..+ ++.|+
T Consensus 53 ~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~ 93 (94)
T cd05756 53 SRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLT 93 (94)
T ss_pred ceeeecCCeEEEccCCcccCeEEEEEEcCCCccEEEEEEEE
Confidence 45555678999999999999999999999998864 44443
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.8e-05 Score=60.29 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=34.8
Q ss_pred CCceEecCCeEEEcCCC-CCCCEEEEEEEEeCCcceEEEEEEE
Q psy10160 6 SENYELNKNMLTIKRVE-PERLGAYTCQAYNGLGRAVSWTVTL 47 (558)
Q Consensus 6 ~~r~~~~~~~L~I~~v~-~~D~G~Y~C~a~n~~g~~~s~~l~V 47 (558)
..++.+.++.|.|.++. .+|+|.|+|.|.|..|...+..+.|
T Consensus 49 ~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 49 NDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 45777788999999985 6999999999999999886655544
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=97.85 E-value=3e-05 Score=61.83 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=28.3
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQA 49 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~ 49 (558)
++|.|.+++.+|+|.|+|.|.|..|...+..+.|.+
T Consensus 60 ~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 60 STLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred eEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 589999999999999999999997444444444443
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.7e-05 Score=59.77 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=32.3
Q ss_pred eEecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEE
Q psy10160 9 YELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTL 47 (558)
Q Consensus 9 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V 47 (558)
+...+++|.|.+++.+|+|.|+|.|.|..|... +..|.|
T Consensus 48 ~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 48 ISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV 87 (88)
T ss_pred EEEeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence 345778999999999999999999999999864 455544
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.8e-05 Score=57.50 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=31.9
Q ss_pred CceEe-cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEE
Q psy10160 7 ENYEL-NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVT 46 (558)
Q Consensus 7 ~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~ 46 (558)
.++.. .++.|.|.+++.+|+|.|+|.|.|..|... ++.|.
T Consensus 29 ~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 70 (71)
T cd05723 29 DYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI 70 (71)
T ss_pred CCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence 34453 567899999999999999999999999874 44443
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.6e-05 Score=61.94 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=30.4
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEE
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQ 48 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~ 48 (558)
.++|.|.+++.+|+|.|+|.|.|..|... ++.|.|.
T Consensus 64 ~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~ 100 (101)
T cd04975 64 VSELKLVRLKESEAGTYTFLASNSDASKSLTFELYVN 100 (101)
T ss_pred EEEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence 36899999999999999999999999763 5566554
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.2e-05 Score=57.60 Aligned_cols=38 Identities=18% Similarity=0.393 Sum_probs=31.5
Q ss_pred EecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEE
Q psy10160 10 ELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTL 47 (558)
Q Consensus 10 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V 47 (558)
...++.|.|.+++.+|+|.|+|.|.|..|... ++.|.|
T Consensus 37 ~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 37 KVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred EecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 35667999999999999999999999999874 455443
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=97.81 E-value=6.8e-05 Score=61.28 Aligned_cols=65 Identities=25% Similarity=0.584 Sum_probs=44.7
Q ss_pred EeeCCCcEEEEeEeeccC-CCeEEEEECCEE---------e--cc----------CCceEEE--ccC---CeEEEccCCC
Q psy10160 140 VFGVGSDISIPCDVDGYP-IPQVFWYKDGQV---------I--EN----------DGVHYRI--TES---NRLHINQANA 192 (558)
Q Consensus 140 ~v~~G~~v~L~C~~~g~P-~p~i~W~~~g~~---------l--~~----------~~~~~~~--~~~---~sL~I~~v~~ 192 (558)
.+.+|++++|.|.+.+.. ...+.|+|.... + .. ...++.+ ... .+|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 467899999999987643 457999984321 0 00 0124433 111 2599999999
Q ss_pred CCCeEEEEEEEe
Q psy10160 193 TDSGEYRCVASN 204 (558)
Q Consensus 193 ~D~G~Y~C~a~N 204 (558)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999764
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.6e-05 Score=57.86 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=32.1
Q ss_pred eEecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEE
Q psy10160 9 YELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTL 47 (558)
Q Consensus 9 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V 47 (558)
....++.|.|.+++.+|+|.|+|.|.|..|... ++.|.|
T Consensus 36 ~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 36 RRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred EEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 445678999999999999999999999999874 444443
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.79 E-value=8.6e-05 Score=54.60 Aligned_cols=60 Identities=33% Similarity=0.622 Sum_probs=45.0
Q ss_pred EEEEeEeeccCCCeEEEEECCEEeccCCc------eEEEccCCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGV------HYRITESNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 147 v~L~C~~~g~P~p~i~W~~~g~~l~~~~~------~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
+.|.|.+.+.|.+.+.|++++........ .........|.|.+++.+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 46899999978888999998876543221 1111223479999999999999999998876
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=97.77 E-value=6.4e-05 Score=58.61 Aligned_cols=39 Identities=26% Similarity=0.291 Sum_probs=30.9
Q ss_pred CceEec----CCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEE
Q psy10160 7 ENYELN----KNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTV 45 (558)
Q Consensus 7 ~r~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l 45 (558)
+|+... .++|.|.++..+|+|.|+|.|.|..|... ++.|
T Consensus 41 ~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l 84 (86)
T cd05894 41 GRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFV 84 (86)
T ss_pred CeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEE
Confidence 355542 36899999999999999999999999863 3343
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.3e-05 Score=57.72 Aligned_cols=29 Identities=31% Similarity=0.342 Sum_probs=26.5
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceE
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAV 41 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 41 (558)
.++|.|.+++.+|+|.|+|.|.|..|...
T Consensus 39 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 67 (74)
T cd05748 39 STSLVIKNAERSDSGKYTLTLKNPAGEKS 67 (74)
T ss_pred eEEEEECCCCcCcCEEEEEEEECCCccEE
Confidence 45899999999999999999999999863
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.3e-05 Score=59.50 Aligned_cols=39 Identities=26% Similarity=0.351 Sum_probs=32.9
Q ss_pred CceEecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEE
Q psy10160 7 ENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTV 45 (558)
Q Consensus 7 ~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l 45 (558)
.++...++.|.|.+++.+|+|.|+|.|.|..|... ++.|
T Consensus 44 ~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05728 44 NRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASAEL 83 (85)
T ss_pred CeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEE
Confidence 46667788999999999999999999999999864 4443
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.8e-05 Score=60.80 Aligned_cols=35 Identities=34% Similarity=0.460 Sum_probs=28.7
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEE
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~ 48 (558)
++|+|.+++.+|+|.|+|.|.|..|......+.+.
T Consensus 57 ~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~ 91 (92)
T cd04977 57 STLTIYNANIEDAGIYKCVATDAKGTESEATVNLK 91 (92)
T ss_pred EEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence 48999999999999999999999776555555443
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0001 Score=58.53 Aligned_cols=42 Identities=31% Similarity=0.474 Sum_probs=34.6
Q ss_pred CCceEecCCeEEEcCCC-CCCCEEEEEEEEeCCcceEEEEEEE
Q psy10160 6 SENYELNKNMLTIKRVE-PERLGAYTCQAYNGLGRAVSWTVTL 47 (558)
Q Consensus 6 ~~r~~~~~~~L~I~~v~-~~D~G~Y~C~a~n~~g~~~s~~l~V 47 (558)
..++.+.+++|.|.++. .+|+|.|+|.|+|..|...+..+.|
T Consensus 50 ~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 50 ESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred CceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 34677778899998865 6999999999999999887766555
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=97.74 E-value=5.6e-05 Score=58.21 Aligned_cols=35 Identities=31% Similarity=0.511 Sum_probs=29.4
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVT 46 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~ 46 (558)
+.++|.|.+++.+|+|.|+|.|.|..|... ++.|+
T Consensus 45 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 45 NIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred cccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 457899999999999999999999999863 44443
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=97.73 E-value=8e-05 Score=58.07 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=32.9
Q ss_pred CceEe-cCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEE
Q psy10160 7 ENYEL-NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47 (558)
Q Consensus 7 ~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V 47 (558)
.++.. .+++|.|.+++.+|+|.|+|.|.|..|...+..+.|
T Consensus 43 ~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l 84 (86)
T cd05724 43 ERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARL 84 (86)
T ss_pred CCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEE
Confidence 34443 468999999999999999999999999876554444
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.9e-05 Score=57.40 Aligned_cols=30 Identities=30% Similarity=0.467 Sum_probs=27.6
Q ss_pred ecCCeEEEcCCCCCCCEEEEEEEEeCCcce
Q psy10160 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRA 40 (558)
Q Consensus 11 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 40 (558)
..+++|.|.+++.+|+|.|+|.|.|..|..
T Consensus 37 ~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 66 (74)
T cd05764 37 YDNGTLDILITTVKDTGSFTCIASNAAGEA 66 (74)
T ss_pred ecCCEEEEEECChhhCEEEEEEEECCCCeE
Confidence 467899999999999999999999999976
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=97.73 E-value=5.4e-05 Score=60.76 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=31.1
Q ss_pred CceEec----CCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEE
Q psy10160 7 ENYELN----KNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTV 45 (558)
Q Consensus 7 ~r~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l 45 (558)
.|+... .++|.|.+++.+|+|.|+|.|.|..|... ++.|
T Consensus 53 ~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 96 (98)
T cd05870 53 GRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL 96 (98)
T ss_pred ceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEE
Confidence 456542 35899999999999999999999999764 4443
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli) | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00011 Score=58.20 Aligned_cols=100 Identities=15% Similarity=0.193 Sum_probs=64.0
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccc-------cChHHHHHHHHH
Q psy10160 450 HFELNVFKPLIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPH-------IGYDKAAKIAKT 522 (558)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~-------l~~~~a~~~~~~ 522 (558)
.|+||...+...+++--.+....-+...+. +.|.+|.||+++|.+.|+++|. .||+. .|++.++|..|+
T Consensus 2 R~QRDLtDSTvlRNiGva~~~sliA~~s~l-kGl~Kl~vn~~~l~~dL~~nWe---VlaEpIQTvmRr~g~~~pYE~LK~ 77 (115)
T PF08328_consen 2 RWQRDLTDSTVLRNIGVAFGHSLIAYKSLL-KGLGKLEVNEERLAEDLDENWE---VLAEPIQTVMRRYGIPNPYEKLKE 77 (115)
T ss_dssp STTB-THHHHHHTTHHHHHHHHHHHHHHHH-HHHHTEEE-HHHHHHHHCT-GG---GGHHHHHHHHHHTT-SSHHHHHHH
T ss_pred cccccchHHHHHHhhhHHHHHHHHHHHHHH-HHHhcccCCHHHHHHHHHHCHH---HHHHHHHHHHHHcCCCCHHHHHHH
Confidence 478888777777777666666666665555 4899999999999999999997 47754 388888887776
Q ss_pred HHHcCCCH-----HHHHHHcCCCCHHHHhhh--cCccccc
Q psy10160 523 AHKEGTTL-----KVAALKLGYLTEEEFNKW--VVPEDML 555 (558)
Q Consensus 523 a~~~~~~~-----~~~~~~~~~l~~~~~~~~--~~p~~~~ 555 (558)
.. .|+.+ ++++.... ++++...++ +.|.+|+
T Consensus 78 lT-Rg~~it~~~l~~fI~~L~-ip~~~k~~L~~ltP~~Y~ 115 (115)
T PF08328_consen 78 LT-RGKKITKEDLREFIESLD-IPEEAKARLLALTPATYI 115 (115)
T ss_dssp HH-TTS---HHHHHHHHHTSS-S-HHHHHHHHH--CCC--
T ss_pred HH-cCCCCCHHHHHHHHHhCC-CCHHHHHHHHhcCccccC
Confidence 43 45443 33333344 788776665 5898885
|
It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A. |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.9e-05 Score=61.20 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=30.6
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEE
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQ 48 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~ 48 (558)
.++|.|.+++.+|+|.|+|.|.|..|... ++.+.|.
T Consensus 64 ~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~ 100 (101)
T cd05859 64 VSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ 100 (101)
T ss_pred ccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence 36899999999999999999999998864 6666654
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=97.69 E-value=7.1e-05 Score=57.53 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=26.4
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceE
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAV 41 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 41 (558)
.+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus 45 ~~~L~I~~~~~~D~G~YtC~A~N~~G~~~ 73 (81)
T cd04971 45 HGCLQFDNPTHVNNGNYTLVASNEYGQDS 73 (81)
T ss_pred EEEEEECCCCcccCeEEEEEEEeCCCCee
Confidence 34799999999999999999999999863
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0001 Score=58.54 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=33.4
Q ss_pred CceEecCCeEEEcCCC-CCCCEEEEEEEEeCCcceEEEEEEE
Q psy10160 7 ENYELNKNMLTIKRVE-PERLGAYTCQAYNGLGRAVSWTVTL 47 (558)
Q Consensus 7 ~r~~~~~~~L~I~~v~-~~D~G~Y~C~a~n~~g~~~s~~l~V 47 (558)
.++...+++|.|.++. .+|+|.|+|.|.|..|...+..+.|
T Consensus 51 ~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 51 YRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred ceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence 3566678899999985 6999999999999999886655544
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00045 Score=54.76 Aligned_cols=71 Identities=23% Similarity=0.259 Sum_probs=46.3
Q ss_pred CcEEEEeEeecc-CCCeEEEEECCE----Eecc----C--------CceEEEc----cCCeEEEccCCCCCCeEEEEEEE
Q psy10160 145 SDISIPCDVDGY-PIPQVFWYKDGQ----VIEN----D--------GVHYRIT----ESNRLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 145 ~~v~L~C~~~g~-P~p~i~W~~~g~----~l~~----~--------~~~~~~~----~~~sL~I~~v~~~D~G~Y~C~a~ 203 (558)
+.++|.|..... ..+.+.|.|... .+.. . ..|.... .+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 467899987532 345688988431 1110 0 1233322 24689999999999999999998
Q ss_pred eC-CceeeEEEEE
Q psy10160 204 NS-YTSDENAVTI 215 (558)
Q Consensus 204 N~-~G~~~~~~~l 215 (558)
+. .|...+.+.+
T Consensus 81 t~P~g~~~~~i~~ 93 (96)
T cd05889 81 TYPQGSWEKVIEV 93 (96)
T ss_pred eCCCCCeEEEEEE
Confidence 74 6777766654
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.4e-05 Score=60.21 Aligned_cols=34 Identities=35% Similarity=0.478 Sum_probs=29.3
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEE
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTL 47 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V 47 (558)
++|.|.+++.+|+|.|+|.|.|..|... ++.|.|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 89 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV 89 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence 4799999999999999999999999864 555554
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00012 Score=59.33 Aligned_cols=65 Identities=14% Similarity=0.276 Sum_probs=44.4
Q ss_pred EeeCCCcEEEEeEeeccCCCeEEEEECCEE-------e---cc-C----------CceEEEccC---CeEEEccCCCCCC
Q psy10160 140 VFGVGSDISIPCDVDGYPIPQVFWYKDGQV-------I---EN-D----------GVHYRITES---NRLHINQANATDS 195 (558)
Q Consensus 140 ~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~-------l---~~-~----------~~~~~~~~~---~sL~I~~v~~~D~ 195 (558)
.+.+|+.|+|.|.....-...+.|+|.... + .. . ..++..... .+|.|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 367899999999986654556999984321 1 00 0 123433221 2699999999999
Q ss_pred eEEEEEEEe
Q psy10160 196 GEYRCVASN 204 (558)
Q Consensus 196 G~Y~C~a~N 204 (558)
|+|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999998764
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00012 Score=58.31 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=30.6
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQ 48 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~ 48 (558)
.++.|.|.+++.+|+|.|+|.|.|..|... ++.|.|.
T Consensus 56 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 93 (95)
T cd05730 56 DGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVF 93 (95)
T ss_pred CCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEE
Confidence 345799999999999999999999999864 5555554
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00016 Score=56.96 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=26.7
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcce
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRA 40 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 40 (558)
.++.|.|.+++.+|+|.|+|.+.|..+..
T Consensus 50 ~~~~L~I~~v~~~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 50 KGSKLLIQNVTEEDAGNYTCKLTFTHNGK 78 (92)
T ss_pred cCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence 77899999999999999999999987765
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00019 Score=54.47 Aligned_cols=36 Identities=33% Similarity=0.385 Sum_probs=30.3
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEE
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQ 48 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~ 48 (558)
+..|.|.+++.+|+|.|+|.+.|..|... ++.|.|+
T Consensus 38 ~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 38 GSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 35799999999999999999999999874 5566553
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=97.64 E-value=8.1e-05 Score=56.63 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=26.0
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcce
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRA 40 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 40 (558)
.++|.|.++..+|+|.|+|.|+|..|..
T Consensus 43 ~~~L~i~~~~~~D~G~YtC~A~N~~G~~ 70 (79)
T cd05855 43 HGCLQLDNPTHLNNGIYTLVAKNEYGED 70 (79)
T ss_pred EEEEEECCCCcccCEEEEEEEEcCCccc
Confidence 3589999999999999999999999976
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00033 Score=55.53 Aligned_cols=75 Identities=20% Similarity=0.414 Sum_probs=44.8
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCC--ceEEEccCCeEE---EccCCCCCCeEEEEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDG--VHYRITESNRLH---INQANATDSGEYRCV 201 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~--~~~~~~~~~sL~---I~~v~~~D~G~Y~C~ 201 (558)
||.+.+.+.... |+.++|.|.+.|. |.+ .+.|.++|..+.... ..+....+++.. .-.+...|.+.|+|.
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~ 78 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCR 78 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEE
Confidence 444444433322 7889999999996 544 689999996432211 122223333221 223445588999999
Q ss_pred EEeCC
Q psy10160 202 ASNSY 206 (558)
Q Consensus 202 a~N~~ 206 (558)
+.+..
T Consensus 79 V~H~~ 83 (93)
T cd07698 79 VEHSG 83 (93)
T ss_pred EEeCC
Confidence 98754
|
IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells. |
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00018 Score=58.13 Aligned_cols=45 Identities=27% Similarity=0.191 Sum_probs=35.0
Q ss_pred ccCCceEe-cCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEE
Q psy10160 4 VRSENYEL-NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48 (558)
Q Consensus 4 ~~~~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~ 48 (558)
..++|..+ .+++|.|.+++.+|+|.|+|.+.+.........+.+.
T Consensus 59 ~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 59 AYSGRETIYPNGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred ccCCcEEEeCCCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence 34567775 6799999999999999999999997755545555443
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B | Back alignment and domain information |
|---|
Probab=97.62 E-value=1.5e-05 Score=58.85 Aligned_cols=55 Identities=24% Similarity=0.298 Sum_probs=38.4
Q ss_pred Hhhhhhcccc-----cChHHHHHH----HHHHHHcCCCHHHHHHH-----cCCCCHHHHhhhcCcccccC
Q psy10160 501 LMLVTALNPH-----IGYDKAAKI----AKTAHKEGTTLKVAALK-----LGYLTEEEFNKWVVPEDMLG 556 (558)
Q Consensus 501 ~~~~~~la~~-----l~~~~a~~~----~~~a~~~~~~~~~~~~~-----~~~l~~~~~~~~~~p~~~~~ 556 (558)
+++||+||++ ++||+||++ |+.|.++|+++.++..+ ...++ +++.++|||++++.
T Consensus 1 f~~ATdlAD~LVr~GipFR~AH~iVg~~V~~a~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~~~~V~ 69 (70)
T PF14698_consen 1 FSTATDLADYLVRKGIPFREAHHIVGRLVRLAEEEGKPLSELTLEELQEISPEFE-EDVREALDPEASVE 69 (70)
T ss_dssp TGGHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTTS-GGGS-HHHHHHH-TT---GGGGGGSSHHHHHT
T ss_pred CccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHhHHhH-HHHHHHCCHHHHhc
Confidence 4678899876 599999985 56778899887775443 24454 89999999998764
|
... |
| >PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00042 Score=54.44 Aligned_cols=66 Identities=24% Similarity=0.565 Sum_probs=43.2
Q ss_pred CCcEEEEeEe-eccCCCeEEEEECCEEeccCCceEE-EccC------CeEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 144 GSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYR-ITES------NRLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 144 G~~v~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~-~~~~------~sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
|+.+.+.|.+ .|+|.|.|+|+.++..+........ ...+ .+|.+..-..++...++|.|.|..-..
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 7899999964 6789999999999987721110111 1111 246665544556779999999976543
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B .... |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=97.61 E-value=9.3e-05 Score=57.46 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=29.1
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEE
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTL 47 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V 47 (558)
.++|.|.+++.+|+|.|+|.|.|..|... +..|.|
T Consensus 48 ~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v 83 (84)
T cd05742 48 SSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI 83 (84)
T ss_pred EEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence 35899999999999999999999998764 555443
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00017 Score=59.04 Aligned_cols=39 Identities=28% Similarity=0.432 Sum_probs=31.0
Q ss_pred CCeEEEcCCC-CCCCEEEEEEEEeCCcceE-EEEEEEEeCC
Q psy10160 13 KNMLTIKRVE-PERLGAYTCQAYNGLGRAV-SWTVTLQALP 51 (558)
Q Consensus 13 ~~~L~I~~v~-~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p 51 (558)
+++|.|.+++ .+|.|.|+|.|.|..|... ++.|.+...|
T Consensus 68 ~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 68 TSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred eeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 3689999998 5999999999999999873 5555555443
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00013 Score=56.73 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=29.1
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVT 46 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~ 46 (558)
...+|.|.+++.+|+|.|+|.|.|..|... ++.|.
T Consensus 49 ~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05857 49 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 84 (85)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence 355899999999999999999999999864 44443
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00019 Score=54.58 Aligned_cols=41 Identities=29% Similarity=0.490 Sum_probs=32.2
Q ss_pred CceEe--cCCeEEEcCCCC----CCCEEEEEEEEeCCcceEEEEEEE
Q psy10160 7 ENYEL--NKNMLTIKRVEP----ERLGAYTCQAYNGLGRAVSWTVTL 47 (558)
Q Consensus 7 ~r~~~--~~~~L~I~~v~~----~D~G~Y~C~a~n~~g~~~s~~l~V 47 (558)
.++.. .+++|.|.+++. +|+|.|+|.|.|..|...+..+.|
T Consensus 30 ~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 30 PRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred CCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 44443 468999999865 799999999999999887655544
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00014 Score=57.79 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=31.3
Q ss_pred CCceEec-----CCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEE
Q psy10160 6 SENYELN-----KNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47 (558)
Q Consensus 6 ~~r~~~~-----~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V 47 (558)
+.|+.+. +.+|.|.+|+.+|+|.|+|.+........+.+|+|
T Consensus 49 ~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~~~~~~~~~~~v 95 (95)
T cd05882 49 DNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTMPVRTAKATVTV 95 (95)
T ss_pred CCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEeeccccEEEEEEC
Confidence 4566532 46999999999999999999998554445555543
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00027 Score=53.75 Aligned_cols=36 Identities=36% Similarity=0.503 Sum_probs=29.8
Q ss_pred cCCeEEEcCCCCC----CCEEEEEEEEeCCcceEEEEEEE
Q psy10160 12 NKNMLTIKRVEPE----RLGAYTCQAYNGLGRAVSWTVTL 47 (558)
Q Consensus 12 ~~~~L~I~~v~~~----D~G~Y~C~a~n~~g~~~s~~l~V 47 (558)
.+++|.|..+..+ |+|.|+|.|.|..|...+..+.|
T Consensus 37 ~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 37 NTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 5789999888754 78999999999999887665554
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00012 Score=58.67 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=28.2
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEE
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVT 46 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~ 46 (558)
+.|.|.+++.+|+|.|+|.|.|..|... +..|.
T Consensus 63 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 96 (97)
T cd05869 63 SSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLE 96 (97)
T ss_pred EEEEEecCccCcCEEEEEEEecCCCCeeEEEEEE
Confidence 5899999999999999999999999874 44443
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00018 Score=57.43 Aligned_cols=28 Identities=36% Similarity=0.593 Sum_probs=26.1
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV 41 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 41 (558)
++|.|.+++.+|+|.|+|.|.|..|...
T Consensus 62 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 89 (96)
T cd05732 62 SSLTLKDVQLTDAGRYDCEASNRIGGDQ 89 (96)
T ss_pred EEEEECcCCcCcCEEeEEEEEeCCCCcE
Confidence 4899999999999999999999999863
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00011 Score=58.09 Aligned_cols=28 Identities=36% Similarity=0.392 Sum_probs=25.8
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV 41 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 41 (558)
.+|.|.+++.+|+|.|+|.|.|..|...
T Consensus 58 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05737 58 ASLTIKGVSSEDSGKYGIVVKNKYGGET 85 (92)
T ss_pred EEEEEccCChhhCEEEEEEEEECCCcce
Confidence 3799999999999999999999999863
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00022 Score=55.25 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=28.2
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcce-EEEEEEEEe
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQA 49 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~s~~l~V~~ 49 (558)
..+|.|.+++.+|+|.|+|.|.|..+.. .+..+.|.|
T Consensus 45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V 82 (84)
T cd05861 45 RSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITV 82 (84)
T ss_pred EEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEE
Confidence 4589999999999999999999976522 344444444
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00037 Score=53.03 Aligned_cols=42 Identities=29% Similarity=0.395 Sum_probs=32.3
Q ss_pred CCceEe--cCCeEEEcCCCC----CCCEEEEEEEEeCCcceEEEEEEE
Q psy10160 6 SENYEL--NKNMLTIKRVEP----ERLGAYTCQAYNGLGRAVSWTVTL 47 (558)
Q Consensus 6 ~~r~~~--~~~~L~I~~v~~----~D~G~Y~C~a~n~~g~~~s~~l~V 47 (558)
+.++.. .+++|.|.+++. +|+|.|+|.|.|..|...+..+.|
T Consensus 29 ~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 29 DPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred CCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 445554 578999998752 469999999999999887666554
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00023 Score=55.93 Aligned_cols=43 Identities=28% Similarity=0.372 Sum_probs=33.7
Q ss_pred CceEecCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEe
Q psy10160 7 ENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQA 49 (558)
Q Consensus 7 ~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~ 49 (558)
.++....+.|.|.+++.+|+|.|+|.+.|..+.....+++|.+
T Consensus 44 ~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V 86 (89)
T cd04979 44 ERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNV 86 (89)
T ss_pred ceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEE
Confidence 4566666789999999999999999999877665555555554
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00015 Score=55.80 Aligned_cols=34 Identities=35% Similarity=0.573 Sum_probs=28.3
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEE
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V 47 (558)
..+|.|.+++.+|+|.|+|.+.|..|.. +..+.|
T Consensus 47 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~v 80 (82)
T cd05856 47 KWTLSLKNLKPEDSGKYTCHVSNRAGEI-NATYKV 80 (82)
T ss_pred eEEEEEccCChhhCEEEEEEEEcCCccE-EEEEEE
Confidence 3689999999999999999999999975 334444
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00047 Score=57.22 Aligned_cols=70 Identities=19% Similarity=0.416 Sum_probs=47.8
Q ss_pred cCCceEeeCCCcEEEEeEeeccC--CCeEEEEECC--E-E--e---cc----------CCceEEEccC---C--eEEEcc
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYP--IPQVFWYKDG--Q-V--I---EN----------DGVHYRITES---N--RLHINQ 189 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~g--~-~--l---~~----------~~~~~~~~~~---~--sL~I~~ 189 (558)
.|....+.+|++++|.|...+.- ...+.|+|.. + + + .. -..+|....+ . +|.|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 35567789999999999876543 4568999832 1 1 1 00 0124544321 2 699999
Q ss_pred CCCCCCeEEEEEEEe
Q psy10160 190 ANATDSGEYRCVASN 204 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N 204 (558)
++.+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999998765
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00031 Score=55.33 Aligned_cols=42 Identities=19% Similarity=0.435 Sum_probs=32.1
Q ss_pred CCceEecCCeEEEcCCCCCCCEEEEEEEEe-CCcceE-EEEEEE
Q psy10160 6 SENYELNKNMLTIKRVEPERLGAYTCQAYN-GLGRAV-SWTVTL 47 (558)
Q Consensus 6 ~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n-~~g~~~-s~~l~V 47 (558)
..|+...+++|.|.+++.+|+|.|+|.+.| ..+... ++.|.|
T Consensus 45 ~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v 88 (91)
T cd05871 45 EERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHV 88 (91)
T ss_pred cccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEE
Confidence 357777788999999999999999999984 655443 444444
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00064 Score=56.66 Aligned_cols=70 Identities=23% Similarity=0.325 Sum_probs=47.1
Q ss_pred CCceEeeCCCcEEEEeEeeccC------CCeEEEEECCEE------ec--c--------CCceEEEcc-----CCeEEEc
Q psy10160 136 LETQVFGVGSDISIPCDVDGYP------IPQVFWYKDGQV------IE--N--------DGVHYRITE-----SNRLHIN 188 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P------~p~i~W~~~g~~------l~--~--------~~~~~~~~~-----~~sL~I~ 188 (558)
|....+.+|+.|+|.|.....+ ...+.|+|.... +. . -..|+.+.. +.+|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 4566788999999999865322 234899985311 10 0 012554421 1379999
Q ss_pred cCCCCCCeEEEEEEEeC
Q psy10160 189 QANATDSGEYRCVASNS 205 (558)
Q Consensus 189 ~v~~~D~G~Y~C~a~N~ 205 (558)
+++.+|+|.|.|.+...
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999988664
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00036 Score=55.14 Aligned_cols=44 Identities=23% Similarity=0.212 Sum_probs=34.8
Q ss_pred cCCceEe-cCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEE
Q psy10160 5 RSENYEL-NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48 (558)
Q Consensus 5 ~~~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~ 48 (558)
..+|+.+ .+++|.|.+++.+|+|.|+|.+.+..|......+.+.
T Consensus 47 ~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~ 91 (92)
T cd05741 47 YSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLR 91 (92)
T ss_pred cCCeEEEcCCceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEE
Confidence 3456665 6689999999999999999999988777665555543
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00038 Score=54.96 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=25.2
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcce
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRA 40 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 40 (558)
++..|.|.+|+.+|+|.|+|.+.+..|..
T Consensus 53 ~~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 53 GSTYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred CCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 34689999999999999999999986544
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00032 Score=56.05 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=35.0
Q ss_pred CceEe--cCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEe
Q psy10160 7 ENYEL--NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQA 49 (558)
Q Consensus 7 ~r~~~--~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~ 49 (558)
+|+.+ ++.+|.|.+++.+|+|.|.|.+.+..|...+..+.|.+
T Consensus 52 ~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 52 ERVNFSQNDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred eeEEecCCceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence 45555 34799999999999999999999988887766666655
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00026 Score=55.86 Aligned_cols=38 Identities=29% Similarity=0.422 Sum_probs=31.7
Q ss_pred CCceEecCCeEEEcCCCC-CCCEEEEEEEEeCCcceEEE
Q psy10160 6 SENYELNKNMLTIKRVEP-ERLGAYTCQAYNGLGRAVSW 43 (558)
Q Consensus 6 ~~r~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~g~~~s~ 43 (558)
..++...++.|.|.++.. +|+|.|+|.|.|..|...+.
T Consensus 50 ~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~ 88 (91)
T cd04967 50 DSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLSR 88 (91)
T ss_pred CCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEec
Confidence 346667788999998874 99999999999999987654
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00015 Score=55.42 Aligned_cols=28 Identities=43% Similarity=0.654 Sum_probs=26.2
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV 41 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 41 (558)
+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus 42 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 69 (78)
T cd05743 42 GTLTIRDVKESDQGAYTCEAINTRGMVF 69 (78)
T ss_pred EEEEECCCChHHCEEEEEEEEecCCEEE
Confidence 5899999999999999999999999874
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >smart00407 IGc1 Immunoglobulin C-Type | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00076 Score=50.98 Aligned_cols=61 Identities=18% Similarity=0.384 Sum_probs=39.8
Q ss_pred cEEEEeEeecc-CC-CeEEEEECCEEeccCCce--EEEccCC------eEEEccCCCCCCeEEEEEEEeCC
Q psy10160 146 DISIPCDVDGY-PI-PQVFWYKDGQVIENDGVH--YRITESN------RLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 146 ~v~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~--~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
.++|.|.+.|. |. ..+.|+|+|.++..+... .....++ .|.+.....++...|+|.+....
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 36899999996 54 479999999874332111 1112233 46665556677789999997653
|
|
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0002 Score=54.08 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=26.5
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceE
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAV 41 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 41 (558)
.++|.|.+++.+|+|.|+|.|.|..|...
T Consensus 42 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 70 (75)
T cd05750 42 NSELQINKAKLADSGEYTCVVENILGNDT 70 (75)
T ss_pred eEEEEEccCCcccCeEEEEEEEEcCCcee
Confidence 46899999999999999999999999863
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00032 Score=55.88 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=31.4
Q ss_pred CCceEe-----cCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEE
Q psy10160 6 SENYEL-----NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47 (558)
Q Consensus 6 ~~r~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V 47 (558)
+.||.. ...+|.|.+++.+|+|.|+|.+.+......+..|+|
T Consensus 49 ~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~v 95 (95)
T cd05717 49 DNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPVQTAKATVTV 95 (95)
T ss_pred cCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCCceEEEEEEC
Confidence 456664 235899999999999999999998665544555543
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00032 Score=55.82 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=32.1
Q ss_pred CCceEe-----cCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEE
Q psy10160 6 SENYEL-----NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47 (558)
Q Consensus 6 ~~r~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V 47 (558)
++|+.. ...+|.|.+++.+|+|.|+|.+.+..+...++.|+|
T Consensus 49 ~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~~~~~~l~v 95 (95)
T cd07701 49 DNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPVKTSKAYLTV 95 (95)
T ss_pred CCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecCccEEEEEEC
Confidence 456653 235899999999999999999998666655666553
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00046 Score=59.97 Aligned_cols=80 Identities=14% Similarity=0.165 Sum_probs=47.3
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCC-CCcc-ccCceeEEeccCCCCCCcEEEEeCCcc
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVAD-PNAI-DYGTILSSAFPSESASPVVTQTTTTTT 88 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~-~~~v-~~~~~~~~~~~~~~p~p~v~W~~~~~~ 88 (558)
++-+|.|.+++.+|.|.|+|.......... ..++++..+-...+.. .... ..+..-..|...+.|.|.+.|..+.+.
T Consensus 85 gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~~ 164 (221)
T PHA03376 85 NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV 164 (221)
T ss_pred CeEEEEEEeeeecCCceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccCC
Confidence 344899999999999999999987554332 2222221100000000 0000 022233567788899999999988655
Q ss_pred cCC
Q psy10160 89 EAT 91 (558)
Q Consensus 89 ~~~ 91 (558)
.+.
T Consensus 165 ~~~ 167 (221)
T PHA03376 165 EPA 167 (221)
T ss_pred CCC
Confidence 443
|
|
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00024 Score=55.33 Aligned_cols=36 Identities=39% Similarity=0.466 Sum_probs=29.3
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEE
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQ 48 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~ 48 (558)
.++|.|.+++.+|+|.|+|.|.|..|... +..|.|.
T Consensus 49 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~ 85 (86)
T cd05862 49 SSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVH 85 (86)
T ss_pred eeEEEEecCCcccCEEEEEEEeecceEecccEEEEEe
Confidence 46899999999999999999999887653 5555553
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00022 Score=54.09 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=25.9
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcce
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRA 40 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 40 (558)
.++|.|.+++.+|+|.|+|.+.|..|..
T Consensus 43 ~~~L~I~~~~~~DsG~Y~C~a~N~~g~~ 70 (76)
T cd05895 43 SSELQISKASLADNGEYKCMVSSKLGND 70 (76)
T ss_pred EEEEEECcCCcccCEEEEEEEEeCCCce
Confidence 3689999999999999999999999875
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00066 Score=54.26 Aligned_cols=42 Identities=21% Similarity=0.394 Sum_probs=31.3
Q ss_pred CCceEe-----cCCeEEEcCCCCCCCEEEEEEEEe-CCcceEEEEEEEE
Q psy10160 6 SENYEL-----NKNMLTIKRVEPERLGAYTCQAYN-GLGRAVSWTVTLQ 48 (558)
Q Consensus 6 ~~r~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n-~~g~~~s~~l~V~ 48 (558)
.+|..+ ++++|.|.+++.+|+|.|+|.+.| ..|. .+..+.+.
T Consensus 50 ~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~-~~~~~~L~ 97 (99)
T cd05886 50 RERVTFKNPSFEDGTISLSRLELEDEGVYICEFATFPTGN-RESQLNLT 97 (99)
T ss_pred cCcEEEcCCCCCcceEEEcCCccccCEEEEEEEEeCCCCC-eEEEEEEE
Confidence 455554 458999999999999999999999 5664 34444443
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00037 Score=54.12 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=28.0
Q ss_pred CceEecCCeEEEcCCCCCCCEEEEEEEEeCC
Q psy10160 7 ENYELNKNMLTIKRVEPERLGAYTCQAYNGL 37 (558)
Q Consensus 7 ~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 37 (558)
.|+.+.++.|.|.+++.+|+|.|+|.+.+..
T Consensus 41 ~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 41 AKYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred ceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 5788888999999999999999999999864
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00023 Score=56.30 Aligned_cols=27 Identities=37% Similarity=0.465 Sum_probs=25.4
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCCcceE
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGLGRAV 41 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 41 (558)
+|.|.+++.+|+|.|+|.|.|..|...
T Consensus 59 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05891 59 SLTIKGVTSEDSGKYSINVKNKYGGET 85 (92)
T ss_pred EEEECCCChhhCEEEEEEEEeCCCcee
Confidence 899999999999999999999999873
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00028 Score=55.97 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=30.2
Q ss_pred CceEecCCeEEEcCCCCCCCEEEEEEEEeCCcce
Q psy10160 7 ENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA 40 (558)
Q Consensus 7 ~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 40 (558)
.|+...+..|.|.++..+|+|.|+|+++|.....
T Consensus 63 ~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~ 96 (104)
T cd05896 63 VRMSKEEDSIWFRPAELQDSGLYTCVLRNSTYCM 96 (104)
T ss_pred eeEEEeCCEEEEEeCChhhCeEEEEEECCCCcce
Confidence 3777889999999999999999999999977544
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00019 Score=56.70 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=28.6
Q ss_pred CCceEe-cCCeEEEcCCCCCCCEEEEEEEEeCCcce
Q psy10160 6 SENYEL-NKNMLTIKRVEPERLGAYTCQAYNGLGRA 40 (558)
Q Consensus 6 ~~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 40 (558)
.+++.. .+|.|.|.+|+.+|+|.|+|.|.|..+..
T Consensus 51 ~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 51 GRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred CCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 344544 47999999999999999999999976543
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00029 Score=55.51 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=28.5
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEE
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVT 46 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~ 46 (558)
.++|.|.+++.+|.|.|+|.|.|..|... ++.|+
T Consensus 55 ~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~ 89 (90)
T cd04972 55 IYNLQLSNITSETQTTVTCTAENPVGQANVSVQVT 89 (90)
T ss_pred EEEEEEecCCcccCEEEEEEEECCCCceeEEEEEe
Confidence 35899999999999999999999999864 44443
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00034 Score=55.37 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=26.0
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcce
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRA 40 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 40 (558)
.++|.|.+++.+|+|.|+|.|.|..|..
T Consensus 58 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 85 (92)
T cd05747 58 KSTFEISKVQMSDEGNYTVVVENSEGKQ 85 (92)
T ss_pred eeEEEECCCCcccCEeEEEEEEcCCCCE
Confidence 3589999999999999999999999976
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00024 Score=54.94 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=30.8
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~ 48 (558)
.++.|.|.+++.+|+|.|+|.+.|..|...|..+.+.
T Consensus 46 ~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~ 82 (83)
T cd05753 46 SNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSIT 82 (83)
T ss_pred CCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEE
Confidence 3568999999999999999999999987666555554
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00028 Score=55.47 Aligned_cols=35 Identities=46% Similarity=0.595 Sum_probs=28.9
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVT 46 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~ 46 (558)
...+|.|.+++.+|+|.|+|.+.|..|... ++.|.
T Consensus 54 ~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~ 89 (90)
T PF07679_consen 54 GSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLT 89 (90)
T ss_dssp TEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEE
T ss_pred ceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEE
Confidence 346899999999999999999999988763 44443
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0031 Score=51.50 Aligned_cols=68 Identities=15% Similarity=0.366 Sum_probs=43.7
Q ss_pred ceEeeCCCcEEEEeEeecc-CC-CeEEEEECCEEeccCCceEEEccC-C------eEEEccCCCCCCe-EEEEEEEeCC
Q psy10160 138 TQVFGVGSDISIPCDVDGY-PI-PQVFWYKDGQVIENDGVHYRITES-N------RLHINQANATDSG-EYRCVASNSY 206 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~-~------sL~I~~v~~~D~G-~Y~C~a~N~~ 206 (558)
......|+.++|.|.+.|. |. ..++|+|||..+...........+ + .|.+. ....|.| .|+|.+....
T Consensus 15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRT 92 (111)
T ss_pred hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCC
Confidence 3445578889999999985 54 479999999998643222221222 1 34444 3445544 5999998864
|
IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating |
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00072 Score=53.82 Aligned_cols=38 Identities=39% Similarity=0.495 Sum_probs=31.1
Q ss_pred ecCCeEEEcCC-----CCCCCEEEEEEEEeC-CcceEEEEEEEE
Q psy10160 11 LNKNMLTIKRV-----EPERLGAYTCQAYNG-LGRAVSWTVTLQ 48 (558)
Q Consensus 11 ~~~~~L~I~~v-----~~~D~G~Y~C~a~n~-~g~~~s~~l~V~ 48 (558)
..+++|.|.++ +.+|+|.|+|.|.|. .|...+..+.|.
T Consensus 51 ~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~ 94 (95)
T cd05722 51 LPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLT 94 (95)
T ss_pred ccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEe
Confidence 46778888887 689999999999999 998876666554
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0015 Score=51.70 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=43.6
Q ss_pred CCcEEEEeEe-eccCCCeEEEEECCEEeccCCceEEEccCC------eEEEccCCCCCCeEEEEEEEeCCcee--eEEEE
Q psy10160 144 GSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESN------RLHINQANATDSGEYRCVASNSYTSD--ENAVT 214 (558)
Q Consensus 144 G~~v~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~~G~~--~~~~~ 214 (558)
.....+.|.+ .|+|.+.|+|+++..... ........++ .|.+.....+|.-.|+|++.|..-.. ..++.
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~--~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~ 92 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEA--ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSVT 92 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcc--eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 3467899997 689999999999721110 0011112222 46665555555669999999986433 44455
Q ss_pred EEE
Q psy10160 215 IRV 217 (558)
Q Consensus 215 l~V 217 (558)
|+|
T Consensus 93 L~V 95 (95)
T cd05719 93 LNV 95 (95)
T ss_pred eeC
Confidence 443
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00071 Score=50.15 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=25.7
Q ss_pred ceEecCCeEEEcCCCCCCCEEEEEEEEeCCcceE
Q psy10160 8 NYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV 41 (558)
Q Consensus 8 r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 41 (558)
++...+..|.|.++ +|+|.|+|.|.|..|...
T Consensus 32 ~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~ 63 (69)
T cd05739 32 EMPVGRNVLELTNI--YESANYTCVAISSLGMIE 63 (69)
T ss_pred ceecCccEEEEecc--ccCeeEEEEEEeCCCEEE
Confidence 34445568999997 489999999999999763
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00078 Score=54.20 Aligned_cols=35 Identities=29% Similarity=0.224 Sum_probs=28.1
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQA 49 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~ 49 (558)
.+|.|.+++.+|+|.|+|.+.|..+. ....+.+++
T Consensus 65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~i~l~v 99 (100)
T cd05713 65 VALRIHNVRASDEGLYTCFFQSDGFY-EEATVELKV 99 (100)
T ss_pred EEEEEEcCChhhCEEEEEEEecCCcE-EEEEEEEEE
Confidence 58999999999999999999987665 444555543
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00078 Score=48.12 Aligned_cols=52 Identities=25% Similarity=0.527 Sum_probs=36.7
Q ss_pred eCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeC
Q psy10160 142 GVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 142 ~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
..|.+|+|+|+..+. .+.|.+++..+..++ ..+.+.+-. +++|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~--------~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSD--------EKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCCC--------ceEEeeccC-CCCceEEEEeCCC
Confidence 468999999986533 299999986554432 234444445 8899999998654
|
Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd07699 IgC_L Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00082 Score=53.97 Aligned_cols=66 Identities=17% Similarity=0.383 Sum_probs=41.9
Q ss_pred eeCCCcEEEEeEeec-cC-CCeEEEEECCEEeccCC--ceEEEccCC------eEEEccCCCCCCeEEEEEEEeCC
Q psy10160 141 FGVGSDISIPCDVDG-YP-IPQVFWYKDGQVIENDG--VHYRITESN------RLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 141 v~~G~~v~L~C~~~g-~P-~p~i~W~~~g~~l~~~~--~~~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
...++.++|.|.+.| +| ...+.|++||..+..+. .......++ .|.+..-...+...|+|.+....
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 446788999999999 45 34589999999875321 011112233 34454444445679999987754
|
IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00095 Score=46.66 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=29.5
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcce-EEEEEEEEe
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQA 49 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~s~~l~V~~ 49 (558)
++..|+|.++..+|+|.|.|..+|..-.. .++.++|..
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 56789999999999999999999855443 255665543
|
|
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00065 Score=52.80 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=27.9
Q ss_pred ecCCeEEEcCCCCCCCEEEEEEEEeCCcceE
Q psy10160 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAV 41 (558)
Q Consensus 11 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 41 (558)
..++.|.|.+++.+|+|.|+|.|.|..|...
T Consensus 49 ~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~ 79 (85)
T cd05754 49 DFNGILTIRNVQLSDAGTYVCTGSNMLDTDE 79 (85)
T ss_pred ccCCEEEECCCCHHHCEEEEEEEeccCCeEe
Confidence 3568999999999999999999999998764
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0029 Score=49.84 Aligned_cols=63 Identities=19% Similarity=0.339 Sum_probs=40.1
Q ss_pred eCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCCc--eEEEccCCeEEEc---cCCCCCCeEEEEEEEeC
Q psy10160 142 GVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGV--HYRITESNRLHIN---QANATDSGEYRCVASNS 205 (558)
Q Consensus 142 ~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~--~~~~~~~~sL~I~---~v~~~D~G~Y~C~a~N~ 205 (558)
..|+..+|.|.+.|. |.. .+.|.|||..+. +.. ......+++..+. .+..++...|+|.+.-.
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 457778999999995 433 489999999876 321 1222333332221 23456777899998764
|
IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted. |
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00097 Score=51.01 Aligned_cols=56 Identities=20% Similarity=0.500 Sum_probs=37.5
Q ss_pred cEEEEeEeeccCCC--eEEEEECCE-----Eec------------cCCceEEEccC-----CeEEEccCCCCCCeEEEEE
Q psy10160 146 DISIPCDVDGYPIP--QVFWYKDGQ-----VIE------------NDGVHYRITES-----NRLHINQANATDSGEYRCV 201 (558)
Q Consensus 146 ~v~L~C~~~g~P~p--~i~W~~~g~-----~l~------------~~~~~~~~~~~-----~sL~I~~v~~~D~G~Y~C~ 201 (558)
++.|.|.+.....+ .+.|++... .+. ....|+.+... .+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899998776554 688988431 010 01234444332 3699999999999999996
|
|
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0017 Score=51.45 Aligned_cols=42 Identities=26% Similarity=0.409 Sum_probs=31.1
Q ss_pred CCceEe-----cCCeEEEcCCCCCCCEEEEEEEEe-CCcceE-EEEEEE
Q psy10160 6 SENYEL-----NKNMLTIKRVEPERLGAYTCQAYN-GLGRAV-SWTVTL 47 (558)
Q Consensus 6 ~~r~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n-~~g~~~-s~~l~V 47 (558)
.+|..+ .+.+|.|.+++.+|+|.|+|.+.+ +.|... +..|+|
T Consensus 47 ~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 47 QGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred CCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 345554 378999999999999999999866 666653 444443
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0016 Score=52.33 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=27.6
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEe-CCcceEEEEEEEE
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYN-GLGRAVSWTVTLQ 48 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n-~~g~~~s~~l~V~ 48 (558)
+.+|.|.+++.+|+|.|.|.+.+ ..|.. +..+.|.
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~-~~~~~L~ 98 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGNF-EAELVLT 98 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCCe-eeEEEEE
Confidence 56999999999999999999998 55653 4444443
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0035 Score=49.47 Aligned_cols=61 Identities=21% Similarity=0.463 Sum_probs=38.9
Q ss_pred eCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCCc--eEEEccCC------eEEEccCCCCCCeEEEEEEEeC
Q psy10160 142 GVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGV--HYRITESN------RLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 142 ~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~--~~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
..|+..+|.|.+.|. |.. .+.|.+||..+..+.. ......++ .|.+. .++...|+|.+.-.
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~ 83 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW 83 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence 346678999999994 543 5899999988754211 11122233 34443 35566999998764
|
IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom |
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0015 Score=53.14 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=32.2
Q ss_pred CCceEec-----CCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEE
Q psy10160 6 SENYELN-----KNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQ 48 (558)
Q Consensus 6 ~~r~~~~-----~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~ 48 (558)
.+|+.+. +.+|.|.+++.+|+|.|+|.+.+..+... .+.|.|.
T Consensus 55 ~~R~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 55 QGRVFLRRAHDLDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred cCcEEecCCCCCcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEE
Confidence 4566652 35899999999999999999999777653 4444443
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >PHA02914 Immunoglobulin-like domain protein; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.11 Score=50.61 Aligned_cols=82 Identities=21% Similarity=0.348 Sum_probs=54.1
Q ss_pred CCceEeeCCCcEEEEeEeec--c-CCCeEEEEECCEEecc----------------CCceEEEcc---------CCeEEE
Q psy10160 136 LETQVFGVGSDISIPCDVDG--Y-PIPQVFWYKDGQVIEN----------------DGVHYRITE---------SNRLHI 187 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g--~-P~p~i~W~~~g~~l~~----------------~~~~~~~~~---------~~sL~I 187 (558)
..+..+..|+++.|.|..+- + ....+.|.-.|-++.+ .+..|.++. +++|+|
T Consensus 271 ~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTI 350 (500)
T PHA02914 271 FDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTI 350 (500)
T ss_pred cceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEe
Confidence 44555677999999998654 3 3345889876644431 012333322 358999
Q ss_pred ccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 188 NQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 188 ~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
+++..+..|=|+|+|....-.....--|.|
T Consensus 351 kka~I~N~GCY~~~a~~g~~~~ec~~Cl~V 380 (500)
T PHA02914 351 KKAHINNAGCYEAQAFMGKFKEECRHCFKV 380 (500)
T ss_pred eeEEEEcCCceEEEEecCcchhhhhhheEe
Confidence 999999999999999887554444444444
|
|
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0016 Score=53.26 Aligned_cols=36 Identities=19% Similarity=0.464 Sum_probs=27.5
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTL 47 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V 47 (558)
.+.+|+|.+++.+|+|.|+|.+.+...... ...|.|
T Consensus 72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v 108 (112)
T cd05900 72 SDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQV 108 (112)
T ss_pred CCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEE
Confidence 467999999999999999999997654432 344444
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0026 Score=50.82 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=27.0
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEe-CCcceEEEEEEEE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYN-GLGRAVSWTVTLQ 48 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n-~~g~~~s~~l~V~ 48 (558)
.+.+|.|.+++.+|+|.|.|.+.+ ..|.. ...+.|.
T Consensus 60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~-~~~~~l~ 96 (98)
T cd05718 60 EDATISISNLRLEDEGNYICEFATFPQGNR-QKVTTLT 96 (98)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCCcE-EEEEEEE
Confidence 356999999999999999999976 45544 3344443
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.002 Score=52.76 Aligned_cols=43 Identities=19% Similarity=0.387 Sum_probs=30.7
Q ss_pred cCCceEe-------cCCeEEEcCCCCCCCEEEEEEEEeCCcce-EEEEEEE
Q psy10160 5 RSENYEL-------NKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTL 47 (558)
Q Consensus 5 ~~~r~~~-------~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~s~~l~V 47 (558)
+.+|+.+ ++.+|+|.+++.+|+|.|.|.+....... ....|.|
T Consensus 56 f~gR~~~~~~~~~~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V 106 (110)
T cd05878 56 YQGRVSLPNYPENRGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEV 106 (110)
T ss_pred ccCeEEeccCCCCCCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEE
Confidence 3456654 34689999999999999999999854333 2444444
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0032 Score=45.31 Aligned_cols=50 Identities=20% Similarity=0.426 Sum_probs=38.1
Q ss_pred CCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEe
Q psy10160 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 143 ~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N 204 (558)
..+.|.|+|.+. -+|.|++ |..+... .+.+|.+..+..+-.|.|.|.++|
T Consensus 5 ~~~~V~L~C~~~----tsi~W~k-G~~~~~~-------~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNGA----TNITWKK-GKEILEV-------SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecCC----CcEEEec-Ccccccc-------cccEEeccCcccCCCcceEecCcc
Confidence 356799999762 3599999 6554321 256788889999999999999887
|
Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0016 Score=52.21 Aligned_cols=29 Identities=38% Similarity=0.551 Sum_probs=23.3
Q ss_pred CCCCCCEEEEEEEEeCCcceEEEEEEEEe
Q psy10160 21 VEPERLGAYTCQAYNGLGRAVSWTVTLQA 49 (558)
Q Consensus 21 v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~ 49 (558)
++.+|+|.|+|.|.|..|...+..+.|.+
T Consensus 71 ~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 71 KGRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred CCcCcCEEEEEEEEccccceecceEEEEe
Confidence 47999999999999999986655555543
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0093 Score=47.17 Aligned_cols=66 Identities=21% Similarity=0.373 Sum_probs=41.1
Q ss_pred eCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCC--ceEEEccCCeEEE---ccCCCCCCeEEEEEEEeCCc
Q psy10160 142 GVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDG--VHYRITESNRLHI---NQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 142 ~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~--~~~~~~~~~sL~I---~~v~~~D~G~Y~C~a~N~~G 207 (558)
..|+.++|.|.+.|. |.. .+.|+++|..+...- ....-..+++..+ -.+..++...|+|.+.....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l 84 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSL 84 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 368899999999995 544 589999998875421 1111122332211 12334566799999887543
|
IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0014 Score=53.30 Aligned_cols=37 Identities=19% Similarity=0.425 Sum_probs=28.9
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQ 48 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~ 48 (558)
.+.+|.|.+++.+|+|.|.|.+.+..+... ...|.|.
T Consensus 66 ~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 66 GDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred CcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence 457999999999999999999998766532 4444443
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0019 Score=53.28 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=28.0
Q ss_pred cCCceEe------cCCeEEEcCCCCCCCEEEEEEEEeCCc
Q psy10160 5 RSENYEL------NKNMLTIKRVEPERLGAYTCQAYNGLG 38 (558)
Q Consensus 5 ~~~r~~~------~~~~L~I~~v~~~D~G~Y~C~a~n~~g 38 (558)
+.+|+.+ ++.+|.|.+++.+|+|.|+|.+.|..+
T Consensus 65 f~~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 65 FKERIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred ccCceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcCCC
Confidence 3456653 557999999999999999999999665
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0023 Score=50.53 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=30.2
Q ss_pred cccCCceEec---CC--eEEEcCCCCCCCEEEEEEEEeCCcceEEEE
Q psy10160 3 QVRSENYELN---KN--MLTIKRVEPERLGAYTCQAYNGLGRAVSWT 44 (558)
Q Consensus 3 p~~~~r~~~~---~~--~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~ 44 (558)
+..++||... +. +|.|.+++.+|+|.|.|.+....-.....+
T Consensus 46 ~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p~~~~~~~ 92 (95)
T cd05881 46 PLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTDPPQEAYTT 92 (95)
T ss_pred ccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcccCeEEEEE
Confidence 3456788742 22 699999999999999999987544333333
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0028 Score=51.06 Aligned_cols=65 Identities=15% Similarity=0.395 Sum_probs=39.3
Q ss_pred eeCCCcEEEEeEeeccCCC--eEEEEECCEEeccCCc---eEEEcc--CC------eEEEccCCCCCCeEEEEEEEeC
Q psy10160 141 FGVGSDISIPCDVDGYPIP--QVFWYKDGQVIENDGV---HYRITE--SN------RLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~P~p--~i~W~~~g~~l~~~~~---~~~~~~--~~------sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
+..|+.++|.|.+.|.-++ .+.|.++|.++...+. ...... ++ .|.+..-...+...|+|.+.-.
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~ 90 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE 90 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence 3457889999999995443 4799999988753210 001111 23 3444332234556899998764
|
IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0049 Score=48.70 Aligned_cols=64 Identities=9% Similarity=0.157 Sum_probs=39.8
Q ss_pred CcEEEEeEe-eccCCCeEEEEECCEEeccCCceEEEccC------CeEEEccCCCCCCeEEEEEEEeCCceee
Q psy10160 145 SDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITES------NRLHINQANATDSGEYRCVASNSYTSDE 210 (558)
Q Consensus 145 ~~v~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~------~sL~I~~v~~~D~G~Y~C~a~N~~G~~~ 210 (558)
....+.|.+ .|+|.+.|+|+++..... ........+ +.|.+..-..+|...|+|++.|..-...
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~--~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~ 86 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNA--NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEP 86 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCe--eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCC
Confidence 457899976 588999999998722111 001111112 2466655555566699999999864443
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. |
| >cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE) | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0044 Score=49.01 Aligned_cols=66 Identities=26% Similarity=0.441 Sum_probs=40.9
Q ss_pred CCCcEEEEeEeecc-CC-CeEEEEECCEEeccCCc--eEEEccCC------eEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 143 VGSDISIPCDVDGY-PI-PQVFWYKDGQVIENDGV--HYRITESN------RLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 143 ~G~~v~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~--~~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
.++.+.|.|.+.|. |. ..+.|.++|..+..... ......++ .|.+..-...+...|+|.+......
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 45669999999994 54 35899999988633210 11112222 3545433334567999999876543
|
IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG. |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0022 Score=51.37 Aligned_cols=28 Identities=29% Similarity=0.597 Sum_probs=24.7
Q ss_pred CeEEEcCCCCCC-CEEEEEEEEeCCcceE
Q psy10160 14 NMLTIKRVEPER-LGAYTCQAYNGLGRAV 41 (558)
Q Consensus 14 ~~L~I~~v~~~D-~G~Y~C~a~n~~g~~~ 41 (558)
++|.|.+++.+| .|.|+|.|.|..|...
T Consensus 64 s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~ 92 (98)
T cd05758 64 STLTISNTQESDFQTSYNCTAWNSFGSGT 92 (98)
T ss_pred EEEEECCccccccceeEEEEEEcCCCccc
Confidence 389999999955 9999999999999863
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0039 Score=51.04 Aligned_cols=37 Identities=19% Similarity=0.470 Sum_probs=29.0
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQ 48 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~ 48 (558)
.+.+|.|.+++.+|+|.|+|.+.+.....+ ...|.|.
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 467999999999999999999998765543 4455443
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0035 Score=43.86 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=33.1
Q ss_pred cCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEe
Q psy10160 181 ESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218 (558)
Q Consensus 181 ~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 218 (558)
....|.|-++..+|+|.|.|...|..-....++.|.|.
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 34579999999999999999999988888888888884
|
|
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0027 Score=48.69 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=27.6
Q ss_pred ecCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEE
Q psy10160 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47 (558)
Q Consensus 11 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V 47 (558)
...+.|.|.++ .|+|.|+|.|+|..|...+..++|
T Consensus 46 ~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 46 PSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV 80 (81)
T ss_pred CCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence 34678999887 589999999999999876544443
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0054 Score=48.57 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=29.8
Q ss_pred CceEe-----cCCeEEEcCCCCCCCEEEEEEEEe-CCcceEEEEEEE
Q psy10160 7 ENYEL-----NKNMLTIKRVEPERLGAYTCQAYN-GLGRAVSWTVTL 47 (558)
Q Consensus 7 ~r~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n-~~g~~~s~~l~V 47 (558)
+|..+ .+.+|.|.+|+.+|+|.|+|...+ +.|.. +..+.|
T Consensus 48 ~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~-~~~i~~ 93 (96)
T cd05889 48 GRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVTYPQGSW-EKVIEV 93 (96)
T ss_pred CeEEEecCCCCccEEEEcCCCcccCEEEEEEEEeCCCCCe-EEEEEE
Confidence 45554 358999999999999999999987 45543 444444
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0032 Score=51.36 Aligned_cols=36 Identities=17% Similarity=0.378 Sum_probs=27.1
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTL 47 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V 47 (558)
.+.+|.|.+++.+|+|.|.|.......... ...|.|
T Consensus 70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V 106 (110)
T cd05902 70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEV 106 (110)
T ss_pred ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEE
Confidence 356999999999999999999998553322 444444
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0027 Score=45.32 Aligned_cols=28 Identities=46% Similarity=0.609 Sum_probs=24.7
Q ss_pred ecCCeEEEcCCCCCCCEEEEEEEEeCCc
Q psy10160 11 LNKNMLTIKRVEPERLGAYTCQAYNGLG 38 (558)
Q Consensus 11 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 38 (558)
..+..|.|.+++.+|+|.|+|.+.|..|
T Consensus 36 ~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 36 ASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 4567999999999999999999998764
|
|
| >cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0085 Score=47.57 Aligned_cols=69 Identities=10% Similarity=0.214 Sum_probs=39.7
Q ss_pred ceEeeCCCcEEEEeEeecc--CCC-eEEEEECCEEec-cCCceEEEccCCe------EEEccCCCCCCeEEEEEEEeCC
Q psy10160 138 TQVFGVGSDISIPCDVDGY--PIP-QVFWYKDGQVIE-NDGVHYRITESNR------LHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~--P~p-~i~W~~~g~~l~-~~~~~~~~~~~~s------L~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
...+..|+.++|.|.+.|. |.. .++|.|+++... ..........+++ |.+..-..++.-.|+|.+....
T Consensus 8 ~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 8 PKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred HHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence 3335568999999999998 432 489999874332 1110111122333 4343322233458999987653
|
IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.012 Score=47.66 Aligned_cols=68 Identities=10% Similarity=0.163 Sum_probs=45.0
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCC---eEEEEECCE-Eec-------------cCCceEEEccC-----CeEEEccCCC
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIP---QVFWYKDGQ-VIE-------------NDGVHYRITES-----NRLHINQANA 192 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p---~i~W~~~g~-~l~-------------~~~~~~~~~~~-----~sL~I~~v~~ 192 (558)
++....+..|+.++|.|.++|.-.. .+.|.|... .+. ....++.+..+ -+|.|.+++.
T Consensus 4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a 83 (115)
T cd05721 4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA 83 (115)
T ss_pred ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH
Confidence 3456677889999999999886544 477887321 110 01123322221 1699999999
Q ss_pred CCCeEEEEEE
Q psy10160 193 TDSGEYRCVA 202 (558)
Q Consensus 193 ~D~G~Y~C~a 202 (558)
+|.+.|.|..
T Consensus 84 ~DTa~Y~Ca~ 93 (115)
T cd05721 84 NQTDIYFCKI 93 (115)
T ss_pred HHCeEEEEEe
Confidence 9999999974
|
IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased |
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0033 Score=48.57 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=24.8
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcce
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRA 40 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 40 (558)
..|.|.+++.+|+|.|+|.+.|..|..
T Consensus 51 ~~l~i~~~~~~d~g~Y~C~~~n~~g~~ 77 (85)
T cd05729 51 WTLILESVVPSDSGKYTCIVENKYGSI 77 (85)
T ss_pred EEEEEeECCcccCEEEEEEEEECCceE
Confidence 479999999999999999999999875
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0016 Score=49.57 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.9
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
.+++|.|.++ .+|+|.|+|.|.|.
T Consensus 45 ~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 45 TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred cCCeEEEeec-ccCCEEeEEECCCC
Confidence 6679999999 99999999999875
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0018 Score=51.09 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=23.3
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcc
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGR 39 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~ 39 (558)
.+|+|.+++.+|+|+|.|.+.|..+.
T Consensus 65 ~~L~I~~l~~sDsgtY~C~v~~~~~~ 90 (94)
T cd07690 65 FPLIIKNLKIEDSDTYICEVEDKKEE 90 (94)
T ss_pred EEEEECCCCHHHCEEEEEEECCccce
Confidence 46999999999999999999987654
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.007 Score=48.28 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=24.2
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEe-CCcce
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYN-GLGRA 40 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n-~~g~~ 40 (558)
.+.+|.|.+++.+|+|.|.|...+ +.|..
T Consensus 59 ~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~ 88 (97)
T cd05846 59 NSTSITIWNVTLEDEGCYKCIFNTFPDGSK 88 (97)
T ss_pred CccEEEEeCCceeeeEEEEEEEEeCCCCCe
Confidence 467899999999999999999876 44543
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.007 Score=48.11 Aligned_cols=28 Identities=29% Similarity=0.573 Sum_probs=25.1
Q ss_pred CeEEEcCCCCCC-CEEEEEEEEeCCcceE
Q psy10160 14 NMLTIKRVEPER-LGAYTCQAYNGLGRAV 41 (558)
Q Consensus 14 ~~L~I~~v~~~D-~G~Y~C~a~n~~g~~~ 41 (558)
..|.|.++..+| .|.|.|.|.|..|...
T Consensus 64 S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~ 92 (98)
T cd05898 64 STLTINNIMEADFQTHYNCTAWNSFGSGT 92 (98)
T ss_pred EEEEECCCccccCCcEEEEEEEeCCccce
Confidence 589999998877 8999999999999874
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.018 Score=44.35 Aligned_cols=62 Identities=21% Similarity=0.489 Sum_probs=41.1
Q ss_pred CCCcEEEEeEeecc-CCC-eEEEEECCEEeccCCce--EEEccCC------eEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 143 VGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGVH--YRITESN------RLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 143 ~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~~--~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
.++.+.|.|.+.|. |.. .|.|+++|..+...... .....++ .|.+. .++...|+|.+.....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 48899999999995 544 48999999887643211 1112333 35554 5566689999987543
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A .... |
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0049 Score=50.95 Aligned_cols=27 Identities=30% Similarity=0.467 Sum_probs=24.1
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcc
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGR 39 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 39 (558)
+.+|.|.+++.+|+|.|+|.+.|..+.
T Consensus 78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 78 DASILIWQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred ceEEEEeeCChhhCEEEEEEEEeCCCC
Confidence 568999999999999999999986653
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0096 Score=45.89 Aligned_cols=30 Identities=27% Similarity=0.476 Sum_probs=25.3
Q ss_pred CCceEecCCeEEEcCCCCCCCEEEEEEEEe
Q psy10160 6 SENYELNKNMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 6 ~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
+.|+......|.|.+++.+|+|.|+|.+.-
T Consensus 39 ~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 39 QFSYRVGTDGLLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred CcceEEeCCCCEEEECCHhhCEEEEEEEec
Confidence 356777777788999999999999999873
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0076 Score=49.90 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.8
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcc
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGR 39 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 39 (558)
+.+|+|.+++.+|+|.|.|.+.|..+.
T Consensus 79 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 79 DASIVIHNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeEEEEeeCCcccCEEEEEEEEeCCCC
Confidence 368999999999999999999986654
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.018 Score=45.53 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=24.2
Q ss_pred eeCCCcEEEEeEeecc-CCC-eEEEEECCEEecc
Q psy10160 141 FGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIEN 172 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~ 172 (558)
+..+..++|.|.+.|. |.. .++|.++|..+..
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~ 46 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSIL 46 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence 3446779999999994 543 4799999988643
|
IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. |
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0032 Score=49.64 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=29.3
Q ss_pred CCceEe-cCCeEEEcCCCCCCCE-EEEEEEEeCCcce
Q psy10160 6 SENYEL-NKNMLTIKRVEPERLG-AYTCQAYNGLGRA 40 (558)
Q Consensus 6 ~~r~~~-~~~~L~I~~v~~~D~G-~Y~C~a~n~~g~~ 40 (558)
++|+.. .+|.|.|.+|+.+|+| .|.|.|.|.....
T Consensus 49 ~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 49 DERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred cccEEECCCceEEEEEEehhhCCCCeEEEEEcccccc
Confidence 456665 5799999999999999 8999999976543
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.025 Score=46.47 Aligned_cols=75 Identities=13% Similarity=0.304 Sum_probs=45.4
Q ss_pred CCceEeeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCCc--eEEEccC-C------eEEEccCCCCC-CeEEEEEEE
Q psy10160 136 LETQVFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGV--HYRITES-N------RLHINQANATD-SGEYRCVAS 203 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~--~~~~~~~-~------sL~I~~v~~~D-~G~Y~C~a~ 203 (558)
+....+..++.++|.|.+.|. |.. .+.|.|||..+..... ......+ + .|.+..-...| ...|+|.+.
T Consensus 10 ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~ 89 (115)
T cd05769 10 PSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQ 89 (115)
T ss_pred cChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEE
Confidence 333334467789999999995 543 6899999988764211 0111221 2 35555443333 568999998
Q ss_pred eCCceee
Q psy10160 204 NSYTSDE 210 (558)
Q Consensus 204 N~~G~~~ 210 (558)
-......
T Consensus 90 H~g~~~~ 96 (115)
T cd05769 90 FYGGTDT 96 (115)
T ss_pred EeCCccc
Confidence 7644443
|
IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs. |
| >cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.016 Score=45.78 Aligned_cols=67 Identities=15% Similarity=0.271 Sum_probs=43.1
Q ss_pred eEeeCCCcEEE-EeE-eeccCCCeEEEEECCEEeccCCceEEEccCC------eEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 139 QVFGVGSDISI-PCD-VDGYPIPQVFWYKDGQVIENDGVHYRITESN------RLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 139 ~~v~~G~~v~L-~C~-~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
..+.+|+.+.+ .|. +.|.|.+.|+|+.+...... ..-....++ ++.+..-..+|.-.++|.+....-
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~--~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE--SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc--eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 44678888888 887 57889999999986332211 011111222 466655555666799999988743
|
Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect |
| >PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0074 Score=55.64 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=40.5
Q ss_pred CCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 157 PIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 157 P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
.-|.+.|...+...-.+.++..+.+.|.|.+.+...+++|.|+|..+-..
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 46889999765444344558889999999999999999999999987654
|
These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region |
| >PHA03273 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.42 Score=47.93 Aligned_cols=76 Identities=17% Similarity=0.069 Sum_probs=50.0
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCCcce-EEEEEEEEe-CCCCccCCCCccccC-ceeEEeccCCC-CC--CcEEEEeCCcc
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQA-LPSEKVADPNAIDYG-TILSSAFPSES-AS--PVVTQTTTTTT 88 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~g~~-~s~~l~V~~-~p~~~~~~~~~v~~~-~~~~~~~~~~~-p~--p~v~W~~~~~~ 88 (558)
.|.|..+...++|.|+=...+..+.. ....++|.. .++.....+..+.+| ..--.|.+... |+ ..+.|+.|+..
T Consensus 199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~ 278 (486)
T PHA03273 199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKE 278 (486)
T ss_pred ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCccccCCCceEEEEeeeecCCCceEEEEEeCCee
Confidence 49999999999999997766655443 355666643 334444555555555 44456666554 33 24889999987
Q ss_pred cC
Q psy10160 89 EA 90 (558)
Q Consensus 89 ~~ 90 (558)
+.
T Consensus 279 V~ 280 (486)
T PHA03273 279 VD 280 (486)
T ss_pred cc
Confidence 77
|
|
| >cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.055 Score=42.81 Aligned_cols=63 Identities=11% Similarity=0.328 Sum_probs=36.9
Q ss_pred CCCcEEEEeEeecc-CCC-eEEEEECCEEeccCCc--eEEEccCC------eEEEccCCCCCCeEEEEEEEeCC
Q psy10160 143 VGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGV--HYRITESN------RLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 143 ~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~--~~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
.++.++|.|.+.|. |.. .++|.|+|.. ..... ......++ .|.+..-.-...-.|+|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46679999999995 443 4899999987 32110 01111123 24443322222557999988754
|
IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.012 Score=44.69 Aligned_cols=34 Identities=44% Similarity=0.636 Sum_probs=27.9
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEE
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~ 48 (558)
.|.|.+++.+|+|.|+|.+.+..+...+..+.|.
T Consensus 46 ~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~ 79 (80)
T PF13895_consen 46 GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVT 79 (80)
T ss_dssp EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEE
T ss_pred eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEee
Confidence 4889999999999999999997776556666554
|
... |
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.0063 Score=44.10 Aligned_cols=18 Identities=56% Similarity=0.936 Sum_probs=17.5
Q ss_pred EEEcCCCCCCCEEEEEEE
Q psy10160 16 LTIKRVEPERLGAYTCQA 33 (558)
Q Consensus 16 L~I~~v~~~D~G~Y~C~a 33 (558)
|.|.+++.+|+|.|+|.|
T Consensus 47 L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 47 LTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEESSCTGGGTEEEEEEE
T ss_pred EEEccCCHHHCEEEEEEC
Confidence 999999999999999986
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >KOG1480|consensus | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.0035 Score=65.72 Aligned_cols=87 Identities=29% Similarity=0.484 Sum_probs=67.5
Q ss_pred EEecCCceEeeCCCcEEEEeE-eeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceee
Q psy10160 132 VNITLETQVFGVGSDISIPCD-VDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDE 210 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~-~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~ 210 (558)
+...+.-..|.++..+.+.|. ..+.|...+.|+|++..+.++ ..........|++..+...|.|+|+|.|.|.++...
T Consensus 132 f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd-~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~ 210 (909)
T KOG1480|consen 132 FEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPD-ANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRK 210 (909)
T ss_pred hccChhhheecccccccccccCcccchhhhhhccccCCCCCcc-ccchhhhcCCccccchhhhhcccceeeeehhhcccc
Confidence 334555667788888999987 578888899999999888773 344555667899999999999999999999988763
Q ss_pred ---EEEEEEEec
Q psy10160 211 ---NAVTIRVEG 219 (558)
Q Consensus 211 ---~~~~l~V~~ 219 (558)
..+.+.|.+
T Consensus 211 ~~~~~v~vyv~g 222 (909)
T KOG1480|consen 211 SDPATVQVYVNG 222 (909)
T ss_pred ccceEEEEEEcC
Confidence 445555543
|
|
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.017 Score=43.94 Aligned_cols=34 Identities=50% Similarity=0.664 Sum_probs=27.5
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEE
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~ 48 (558)
.+|.|.+++.+|+|.|+|.+.+..+..... +.|.
T Consensus 51 ~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~-~~l~ 84 (86)
T smart00410 51 STLTISNVTPEDSGTYTCAATNSSGSASST-TTLT 84 (86)
T ss_pred eEEEEEeeccccCeEEEEEEEcCCCeEEEE-EEEE
Confidence 689999999999999999999877765432 4443
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.017 Score=43.94 Aligned_cols=34 Identities=50% Similarity=0.664 Sum_probs=27.5
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEE
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~ 48 (558)
.+|.|.+++.+|+|.|+|.+.+..+..... +.|.
T Consensus 51 ~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~-~~l~ 84 (86)
T smart00409 51 STLTISNVTPEDSGTYTCAATNSSGSASST-TTLT 84 (86)
T ss_pred eEEEEEeeccccCeEEEEEEEcCCCeEEEE-EEEE
Confidence 689999999999999999999877765432 4443
|
|
| >PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.02 Score=47.49 Aligned_cols=75 Identities=21% Similarity=0.414 Sum_probs=46.0
Q ss_pred CCCcEEEEeEeecc-----CCCeEEEEECCEEecc-CCc--eEE--------E----ccCCeEEEccCCCCCCeEEEEEE
Q psy10160 143 VGSDISIPCDVDGY-----PIPQVFWYKDGQVIEN-DGV--HYR--------I----TESNRLHINQANATDSGEYRCVA 202 (558)
Q Consensus 143 ~G~~v~L~C~~~g~-----P~p~i~W~~~g~~l~~-~~~--~~~--------~----~~~~sL~I~~v~~~D~G~Y~C~a 202 (558)
=+++|.|+|.+... +.-.|.|.+++..+-. ++. +.. + .++.+|.+...+.- .|+|+|.+
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV 104 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV 104 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence 47889999998752 2234899999876632 111 110 1 11235877764433 79999999
Q ss_pred EeCCceeeEEEEEEEe
Q psy10160 203 SNSYTSDENAVTIRVE 218 (558)
Q Consensus 203 ~N~~G~~~~~~~l~V~ 218 (558)
.+.....+..+.|.+.
T Consensus 105 t~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 105 TELSREGETTIELKYR 120 (130)
T ss_dssp EETTEEEEEEEEEEE-
T ss_pred EecCCCceEEEEEEEE
Confidence 9999988888888874
|
; PDB: 2VSC_B 2JJS_D 2JJT_C. |
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.018 Score=45.62 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=28.5
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEE
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTL 47 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V 47 (558)
+.|.|.+++.+|+|.|+|.|.|...... ++.|.|
T Consensus 65 S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v 99 (101)
T cd05860 65 SELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYV 99 (101)
T ss_pred EEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEE
Confidence 6899999999999999999999887663 555554
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.03 Score=44.45 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=37.8
Q ss_pred eeCCCcEEEEeEeecc--CCC-eEEEEECCEEeccCCceEEEccCC------eEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 141 FGVGSDISIPCDVDGY--PIP-QVFWYKDGQVIENDGVHYRITESN------RLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~--P~p-~i~W~~~g~~l~~~~~~~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
...++.++|.|.+.|. |.+ .+.|.++|.. ...........++ .|.+..-.-.-...|+|.+.....
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 4468899999999994 433 4899999865 1100000112233 344432222333479999987543
|
IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.01 Score=44.31 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=22.2
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEe
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
.+++|.|.++..+|.|.|+|.|.|
T Consensus 52 ~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 52 SNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSCCGGGTEEEEEEEEE
T ss_pred eeeEEEEccCCHHhCcEEEEEEEC
Confidence 557899999999999999999987
|
... |
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.014 Score=45.97 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.9
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
.+.+.|.+|+.+|+|.|+|...|.
T Consensus 52 ~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 52 KAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred eEEEEccCCChhHCEEEEEEEECC
Confidence 457999999999999999999986
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.021 Score=46.66 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=22.0
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGL 37 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~ 37 (558)
.+|.|.+++.+|+|.|.|.+....
T Consensus 79 ~sL~i~~l~~~DsG~Y~C~v~~~~ 102 (114)
T PF07686_consen 79 FSLTIKNLQPSDSGTYFCQVSTSN 102 (114)
T ss_dssp EEEEESSESGGGEEEEEEEEEESS
T ss_pred EEEEECCCCcCcCEEEEEEEEECC
Confidence 479999999999999999999873
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.018 Score=46.53 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=23.0
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCc
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLG 38 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g 38 (558)
.+|.|.+++.+|+|.|.|.+.+..+
T Consensus 67 ~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 67 FTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred EEEEECCCCHHHCEEEEEEEecCCC
Confidence 4899999999999999999998775
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >PHA03270 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=1.5 Score=43.78 Aligned_cols=78 Identities=9% Similarity=-0.007 Sum_probs=51.7
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcce-EEEEEEEEeC-CCCccCCCCccccC-ceeEEeccCCCCCC---cEEEEeCCc
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQAL-PSEKVADPNAIDYG-TILSSAFPSESASP---VVTQTTTTT 87 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~s~~l~V~~~-p~~~~~~~~~v~~~-~~~~~~~~~~~p~p---~v~W~~~~~ 87 (558)
..|.|..+....+|.|+=...+..+.. +...++|..+ ++.....+..+.+| ..--.|.+...-+| .+.|+.|+.
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~ 261 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHAVLEGEPFGATCVAANYYPGDRAAFRWFEGGD 261 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCccccCCCceEEEEeeeecCCCceEEEEEeCCc
Confidence 469999999999999999987766543 3445666533 33344445555444 44456666554333 478999998
Q ss_pred ccCC
Q psy10160 88 TEAT 91 (558)
Q Consensus 88 ~~~~ 91 (558)
.+..
T Consensus 262 ~V~~ 265 (466)
T PHA03270 262 EVFA 265 (466)
T ss_pred cccC
Confidence 7754
|
|
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.025 Score=46.14 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=26.4
Q ss_pred cCCceEe------cCCeEEEcCCCCCCCEEEEEEEEeCC
Q psy10160 5 RSENYEL------NKNMLTIKRVEPERLGAYTCQAYNGL 37 (558)
Q Consensus 5 ~~~r~~~------~~~~L~I~~v~~~D~G~Y~C~a~n~~ 37 (558)
..+|+.+ ...+|.|.+++.+|+|.|.|.+.+..
T Consensus 55 ~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~ 93 (109)
T cd04983 55 EKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSESG 93 (109)
T ss_pred cCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 3466654 23489999999999999999999754
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.049 Score=47.92 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=32.0
Q ss_pred CCceEe-----cCCeEEEcCCCCCCCEEEEEEEEe-CCcceE--EEEEEEE
Q psy10160 6 SENYEL-----NKNMLTIKRVEPERLGAYTCQAYN-GLGRAV--SWTVTLQ 48 (558)
Q Consensus 6 ~~r~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n-~~g~~~--s~~l~V~ 48 (558)
.+|+.+ .+.+|.|.+|+.+|+|.|+|.... +.|... ...|+|.
T Consensus 72 k~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt 122 (189)
T PHA02987 72 KNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVT 122 (189)
T ss_pred cCeEEEeccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEE
Confidence 357775 778999999999999999999875 455233 4455554
|
|
| >KOG4597|consensus | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.029 Score=55.80 Aligned_cols=83 Identities=18% Similarity=0.115 Sum_probs=62.9
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCeEEEEE---CCEEeccCC----ceEEEccCCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYK---DGQVIENDG----VHYRITESNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~---~g~~l~~~~----~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
+....+..+++.+++|-+.|.|.|.|+|.+ |...+.... .+..+.+...|+|-+....|+|-|+|.+.|..|.
T Consensus 203 pa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~ 282 (560)
T KOG4597|consen 203 PAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGF 282 (560)
T ss_pred cchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccce
Confidence 344556789999999999999999999976 332221111 1122233347999999999999999999999999
Q ss_pred eeEEEEEEEe
Q psy10160 209 DENAVTIRVE 218 (558)
Q Consensus 209 ~~~~~~l~V~ 218 (558)
..+.+.+.+.
T Consensus 283 ~~rdv~c~s~ 292 (560)
T KOG4597|consen 283 LRRDVPCSSV 292 (560)
T ss_pred eeccceeeee
Confidence 9999888774
|
|
| >cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.12 Score=40.67 Aligned_cols=61 Identities=20% Similarity=0.398 Sum_probs=40.1
Q ss_pred eeCCCcEEEEeEeec-cCC--CeEEEEECCEEeccCCceEEE--------ccCCeEEEccCCCCCCe-EEEEEEEe
Q psy10160 141 FGVGSDISIPCDVDG-YPI--PQVFWYKDGQVIENDGVHYRI--------TESNRLHINQANATDSG-EYRCVASN 204 (558)
Q Consensus 141 v~~G~~v~L~C~~~g-~P~--p~i~W~~~g~~l~~~~~~~~~--------~~~~sL~I~~v~~~D~G-~Y~C~a~N 204 (558)
+.+|+.+++.|.+.+ +|. ..+.|++....+.... +.- .....+.|.. +++|.| .|+|.|.=
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~--f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L 84 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKS--FLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKL 84 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccc--cccccccCCCCCcceeEEEec-chhhCCcEEEEEEEE
Confidence 368999999999865 555 4689998776655321 110 1123466655 477777 99999853
|
Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains. |
| >PHA03269 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=4.5 Score=41.10 Aligned_cols=77 Identities=10% Similarity=0.087 Sum_probs=48.8
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCC-cce-EEEEEEEEeC-CCCccCCCCccccC-ceeEEeccCCC-CC--CcEEEEeCCc
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGL-GRA-VSWTVTLQAL-PSEKVADPNAIDYG-TILSSAFPSES-AS--PVVTQTTTTT 87 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~-g~~-~s~~l~V~~~-p~~~~~~~~~v~~~-~~~~~~~~~~~-p~--p~v~W~~~~~ 87 (558)
.|.|.++...++|.|+=...+.. +.. .+..++|... ++.....+..+.+| ..--.|.+... |+ ..+.|+.|+.
T Consensus 290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~ 369 (566)
T PHA03269 290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFG 369 (566)
T ss_pred ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCccccCCCceEEEEeeeecCCCceEEEEEeCCc
Confidence 69999999999999987765433 222 3556666543 23444445555555 44456666554 33 2478999987
Q ss_pred ccCC
Q psy10160 88 TEAT 91 (558)
Q Consensus 88 ~~~~ 91 (558)
.+..
T Consensus 370 ~V~~ 373 (566)
T PHA03269 370 NIGK 373 (566)
T ss_pred ccCc
Confidence 7764
|
|
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.063 Score=42.77 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.5
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGL 37 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~ 37 (558)
.+|.|.+++.+|+|.|.|.+.+..
T Consensus 64 ~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 64 FTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred EEEEEcCCCHHHCEEEEEEcccCC
Confidence 379999999999999999998754
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.1 Score=43.28 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=25.2
Q ss_pred CCceEec------CCeEEEcCCCCCCCEEEEEEEEeCC
Q psy10160 6 SENYELN------KNMLTIKRVEPERLGAYTCQAYNGL 37 (558)
Q Consensus 6 ~~r~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~ 37 (558)
.+|+.+. +.+|.|.+++.+|+|.|.|......
T Consensus 66 ~gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~~ 103 (119)
T cd05712 66 RGRFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVELGD 103 (119)
T ss_pred cccEEEecCCCCCEEEEEEccCChhhCeEEEEEEEcCC
Confidence 4566651 2489999999999999999987643
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.21 Score=39.56 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=31.6
Q ss_pred ecCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEe
Q psy10160 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQA 49 (558)
Q Consensus 11 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~ 49 (558)
..+-+|.|+.+++.|+|.|.-.+++..|...+....|.+
T Consensus 68 ~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 68 SENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred ccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 467799999999999999999999999998766666654
|
It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A. |
| >PHA03042 CD47-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.31 Score=45.39 Aligned_cols=70 Identities=23% Similarity=0.400 Sum_probs=47.9
Q ss_pred CCcEEEEeEeecc-----CCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEe
Q psy10160 144 GSDISIPCDVDGY-----PIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218 (558)
Q Consensus 144 G~~v~L~C~~~g~-----P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 218 (558)
++++.++|.+..- -.-.+.|.++++.+-..+. .+..+|++.. +..=.|+|+|+|.+..-+..+.+.|+-.
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~----tn~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~IeLk~~ 105 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNN----TNTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIELQYV 105 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecC----CcceEEEEec-cccCCCceeEEEeecccCccEEEEEEEE
Confidence 6789999998763 2345899999987654321 1223576643 3344899999999987767777776654
|
|
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.094 Score=42.83 Aligned_cols=24 Identities=42% Similarity=0.588 Sum_probs=21.7
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGL 37 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~ 37 (558)
.+|.|.+++.+|+|.|.|.+.+..
T Consensus 72 ~~L~I~~~~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 72 SSLTIKSAEPEDSAVYLCASSLGG 95 (110)
T ss_pred cEEEECCCChhhCEEEEEEeeCCC
Confidence 589999999999999999998754
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.16 Score=38.61 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=24.8
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcce
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRA 40 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 40 (558)
.++|.|...+.+|.+.|+|.|.|..+..
T Consensus 42 ~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 42 SNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 4579999999999999999999988754
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.096 Score=41.70 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.6
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
.+|.|.+++.+|+|.|.|.+.+.
T Consensus 63 ~~L~I~~~~~~Dsg~Y~C~~~~~ 85 (98)
T cd04984 63 ASLTISGAQTEDEADYYCQVWDS 85 (98)
T ss_pred EEEEECCCChhhCEEEEEEEccC
Confidence 47999999999999999998753
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.059 Score=40.86 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=18.2
Q ss_pred CeEEEcCCCCCCCEEEEEEE
Q psy10160 14 NMLTIKRVEPERLGAYTCQA 33 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a 33 (558)
.+|.|.+++.+|+|.|.|.+
T Consensus 62 ~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 62 VSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred EEEEEcCCCHHHCEEEEEcC
Confidence 47999999999999999963
|
|
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.095 Score=42.45 Aligned_cols=23 Identities=52% Similarity=0.810 Sum_probs=20.6
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
..|.|.+++.+|+|.|.|.+.+.
T Consensus 71 ~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 71 FTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred EEEEECCCChHHCEEEEEEEeCC
Confidence 37999999999999999999754
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.46 Score=37.66 Aligned_cols=39 Identities=26% Similarity=0.242 Sum_probs=31.1
Q ss_pred ccCCeEEEccCCCCCCeEEEEEEEeCCcee-eEEEEEEEe
Q psy10160 180 TESNRLHINQANATDSGEYRCVASNSYTSD-ENAVTIRVE 218 (558)
Q Consensus 180 ~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~ 218 (558)
.++.+|.|+.++..|+|.|.-+++|..|.. .+.+++.|.
T Consensus 68 ~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 68 SENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp TTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred ccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 456799999999999999999999999988 366677663
|
It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A. |
| >PHA03271 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=91.51 E-value=15 Score=36.63 Aligned_cols=80 Identities=11% Similarity=0.053 Sum_probs=49.4
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcce---EEEEEEEEeCCCCccCCCCccccC-ceeEEeccCCCCCC---cEEEEeCC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRA---VSWTVTLQALPSEKVADPNAIDYG-TILSSAFPSESASP---VVTQTTTT 86 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~---~s~~l~V~~~p~~~~~~~~~v~~~-~~~~~~~~~~~p~p---~v~W~~~~ 86 (558)
=.|.|.+|...|+|.|+-...+...+. +...+.+-..|+.....+..+..| ..--.|.+...-+| .++|+.++
T Consensus 207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG 286 (490)
T PHA03271 207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPPVLSGENYKASCIVRHFYPPGSVYVSWRQNG 286 (490)
T ss_pred eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 379999999999997755555544333 233444445566555555555555 44456666554333 47899998
Q ss_pred cccCCCC
Q psy10160 87 TTEATSP 93 (558)
Q Consensus 87 ~~~~~~~ 93 (558)
.......
T Consensus 287 ~~V~~~~ 293 (490)
T PHA03271 287 NIATPRK 293 (490)
T ss_pred ccccCcc
Confidence 7665443
|
|
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.16 Score=41.95 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=25.0
Q ss_pred cCCceEec------CCeEEEcCCCCCCCEEEEEEEEe
Q psy10160 5 RSENYELN------KNMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 5 ~~~r~~~~------~~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
.++|+.+. +.+|.|.+++.+|+|.|.|.+..
T Consensus 57 ~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 57 TKGRYSVNFQKAQKSISLTISALQLEDSAKYFCALST 93 (116)
T ss_pred cCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEEC
Confidence 34677652 23799999999999999999985
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.63 Score=35.72 Aligned_cols=37 Identities=14% Similarity=0.386 Sum_probs=27.3
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEe
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQA 49 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~ 49 (558)
++.+|.+.+++..|+|.++|.+.-. ++...+.+.|.+
T Consensus 49 ~~ktL~~~qv~~qdSG~WtC~V~~~-~k~~~~~~~V~V 85 (88)
T cd07694 49 DKKTLNLVQLGPNDSGTWDCIVSVN-SSEKTLKLDIKV 85 (88)
T ss_pred CccEEEeceeCcccCCEEEEEEEEC-ceEEEEEeeEEE
Confidence 5569999999999999999999754 333344444444
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=91.09 E-value=1.8 Score=32.84 Aligned_cols=52 Identities=23% Similarity=0.382 Sum_probs=33.8
Q ss_pred CCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEE-EeCCceeeEEEEEEE
Q psy10160 158 IPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVA-SNSYTSDENAVTIRV 217 (558)
Q Consensus 158 ~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a-~N~~G~~~~~~~l~V 217 (558)
.|.+.|.-.+... ......+.......+|+|...|.| .|..-.....+.|.|
T Consensus 26 ~~~~~l~~~~~k~--------~~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 26 KPSLFLENPGKKS--------LETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp CEEEEEECSSCEE--------EEESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred ChhheeeccCccc--------cccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 4567776554332 123345667788899999999999 665555556566555
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G .... |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.2 Score=41.34 Aligned_cols=30 Identities=27% Similarity=0.556 Sum_probs=24.1
Q ss_pred CCceEe------cCCeEEEcCCCCCCCEEEEEEEEe
Q psy10160 6 SENYEL------NKNMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 6 ~~r~~~------~~~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
..|+.. ...+|.|.+++.+|+|.|.|.+..
T Consensus 63 ~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 63 KNKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred CCCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence 456664 124799999999999999999875
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.32 Score=37.09 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=21.2
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcc
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGR 39 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~ 39 (558)
+.|.|.....+|.|.|+|.|.|....
T Consensus 46 s~L~i~~~~~~~~~~y~C~a~n~~l~ 71 (82)
T cd05759 46 STLPITPSDHDTGRTFTCRARNEALP 71 (82)
T ss_pred EEEEEeCceecCCCEEEEEEcCccCC
Confidence 46888888888999999999986543
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.18 Score=40.64 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.9
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
.+|.|.+++.+|+|.|.|...+
T Consensus 69 ~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 69 FVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred EEEEECCCCHHHCEEEEEEEcc
Confidence 3799999999999999998864
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=89.93 E-value=0.3 Score=39.61 Aligned_cols=21 Identities=43% Similarity=0.763 Sum_probs=19.4
Q ss_pred eEEEcCCCCCCCEEEEEEEEe
Q psy10160 15 MLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n 35 (558)
.|.|.+++.+|+|.|.|...+
T Consensus 73 ~L~I~~~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 73 RLHINRVKPEDSGTYFCMTVG 93 (107)
T ss_pred EEEECCCCHHHCEEEEEeEcC
Confidence 699999999999999999864
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.85 E-value=0.62 Score=41.51 Aligned_cols=75 Identities=19% Similarity=0.284 Sum_probs=46.6
Q ss_pred ecCCeEEEcCCCCCCCEEEEEEEEeCCcceE--EEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEEeCCcc
Q psy10160 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAV--SWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQTTTTTT 88 (558)
Q Consensus 11 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~--s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~~~~~~ 88 (558)
.+.++|+|.+++.+..|.|+|++....+... ...+.|+.-.-...- .. ...+....|.+...-.+...|..+|..
T Consensus 97 g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~~W--~e-~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 97 GNSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKEDILYVV--EE-HNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred ccceeEEeccCCcccCCceEEEEecCCCchheeheeeeEecceEEEEE--Ee-cCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 3678999999999999999999998776553 334444211000000 00 112445677777765555588877653
|
|
| >PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) [] | Back alignment and domain information |
|---|
Probab=89.13 E-value=1.6 Score=33.86 Aligned_cols=65 Identities=20% Similarity=0.486 Sum_probs=40.8
Q ss_pred cCCceEeeCCCcEEEEeEeecc-----CCCeEEEEECCEEeccCCceEEEccCC--eEEEccCCCCCCeEEEEE
Q psy10160 135 TLETQVFGVGSDISIPCDVDGY-----PIPQVFWYKDGQVIENDGVHYRITESN--RLHINQANATDSGEYRCV 201 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~-----P~p~i~W~~~g~~l~~~~~~~~~~~~~--sL~I~~v~~~D~G~Y~C~ 201 (558)
.++..++..|+.++..|...-. +...|.|..++..++.+ +|....++ ++++.+......-.|-|.
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~--qy~~in~~~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGS--QYRVINDTVSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCG--CEEEESTTEEEEEESS--SSEEEEEEEE
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChh--HcceeCCeEEEEEEccCCCCCceEEEEE
Confidence 4556678899999999997532 44569999998876653 55544544 466666555444455554
|
The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B. |
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=88.68 E-value=0.49 Score=33.69 Aligned_cols=27 Identities=41% Similarity=0.529 Sum_probs=23.5
Q ss_pred ecCCeEEEcCCCCCCCEEEEEEEEeCC
Q psy10160 11 LNKNMLTIKRVEPERLGAYTCQAYNGL 37 (558)
Q Consensus 11 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 37 (558)
.....|.|.+++.+|+|.|.|.+.+..
T Consensus 40 ~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 40 SGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred eeEEEEEECccCcccCcEEEEEEecCc
Confidence 345689999999999999999998865
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein | Back alignment and domain information |
|---|
Probab=88.07 E-value=0.7 Score=47.58 Aligned_cols=43 Identities=26% Similarity=0.233 Sum_probs=0.0
Q ss_pred ceEecCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEeC
Q psy10160 8 NYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQAL 50 (558)
Q Consensus 8 r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~~ 50 (558)
++..+.+.|.|.+++.+|+|.|+-..++..+......+.|.+.
T Consensus 83 ~~~~~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~ 125 (439)
T PF02480_consen 83 RLTFNKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVK 125 (439)
T ss_dssp -------------------------------------------
T ss_pred ceeecCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEc
Confidence 3334668899999999999999999998777664333444443
|
gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B. |
| >PHA03283 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=87.37 E-value=5.2 Score=41.10 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=28.9
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEe
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQA 49 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~ 49 (558)
+.+.|.|.+++.+|+|.|+-..++..+..+ .+.|+|+.
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 457899999999999999999998777433 33444443
|
|
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=86.14 E-value=0.83 Score=35.99 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=19.6
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
..+.|.+++.+|+|.|.|....
T Consensus 55 a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 55 ASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred EEEEecCCCcccCEEEEEEEEC
Confidence 4789999999999999999853
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=83.91 E-value=0.74 Score=38.00 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=19.5
Q ss_pred eEEEcCCCCCCCEEEEEEEEe
Q psy10160 15 MLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n 35 (558)
.|.|.+++.+|+|.|.|.+..
T Consensus 77 ~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 77 YLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred EEEECCCCHHHCEEEEEEEEc
Confidence 699999999999999998865
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.32 E-value=2.6 Score=37.78 Aligned_cols=73 Identities=15% Similarity=0.369 Sum_probs=47.2
Q ss_pred ceEeeCCCcEEEEeEee-ccCCCeEEEEECCE-Eec----------c-------CCceEEEc--c-CCeEEEccCCCCCC
Q psy10160 138 TQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQ-VIE----------N-------DGVHYRIT--E-SNRLHINQANATDS 195 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~-g~P~p~i~W~~~g~-~l~----------~-------~~~~~~~~--~-~~sL~I~~v~~~D~ 195 (558)
+.....+++|.|.|... +...-+..|.+++. .+. . ....+.++ . .++|+|+++..+..
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 34456799999999842 22233478987542 221 0 01122222 2 34899999999999
Q ss_pred eEEEEEEEeCCceee
Q psy10160 196 GEYRCVASNSYTSDE 210 (558)
Q Consensus 196 G~Y~C~a~N~~G~~~ 210 (558)
|=|+|++....+..+
T Consensus 113 GCYtc~~ks~~~k~E 127 (251)
T PHA02982 113 GCFTCEAKDAEGKEE 127 (251)
T ss_pred CceEEEEecCCCchh
Confidence 999999998776654
|
|
| >PHA02865 MHC-like TNF binding protein; Provisional | Back alignment and domain information |
|---|
Probab=82.91 E-value=4.7 Score=39.54 Aligned_cols=21 Identities=19% Similarity=0.496 Sum_probs=16.9
Q ss_pred cEEEEeEeeccCCC--eEEEEEC
Q psy10160 146 DISIPCDVDGYPIP--QVFWYKD 166 (558)
Q Consensus 146 ~v~L~C~~~g~P~p--~i~W~~~ 166 (558)
.++|+|.|.|.=+. .+.|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 58999999996333 4789999
|
|
| >PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs) | Back alignment and domain information |
|---|
Probab=82.66 E-value=20 Score=27.67 Aligned_cols=73 Identities=15% Similarity=0.347 Sum_probs=45.5
Q ss_pred CcEEEecCCceEeeC--C--CcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEe
Q psy10160 129 PVKVNITLETQVFGV--G--SDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 129 p~~~~~~~~~~~v~~--G--~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N 204 (558)
++.+..+....++.. + +...|.+.+.+. .+.+.|+.||..+.... ....+.+. ....|.|+-.+..
T Consensus 10 ~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~------~~~~~~~~---~~~~G~h~l~vvD 79 (89)
T PF06832_consen 10 PLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQ------PGHQLFWQ---PDRPGEHTLTVVD 79 (89)
T ss_pred CCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCC------CCCeEEeC---CCCCeeEEEEEEc
Confidence 445554444444322 2 356677777776 55899999999884322 22234443 2457999999988
Q ss_pred CCceeeE
Q psy10160 205 SYTSDEN 211 (558)
Q Consensus 205 ~~G~~~~ 211 (558)
..|....
T Consensus 80 ~~G~~~~ 86 (89)
T PF06832_consen 80 AQGRSAS 86 (89)
T ss_pred CCCCEEE
Confidence 8887654
|
A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold. |
| >KOG0613|consensus | Back alignment and domain information |
|---|
Probab=81.50 E-value=2.9 Score=47.68 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=58.8
Q ss_pred ceEeeCCCcEEEEeEeeccCCCe-EEEEECCEEeccCCceE-EE---ccCCeEEEccCCCCCCeEEEEEEEeCCceeeEE
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIPQ-VFWYKDGQVIENDGVHY-RI---TESNRLHINQANATDSGEYRCVASNSYTSDENA 212 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p~-i~W~~~g~~l~~~~~~~-~~---~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 212 (558)
...++.+..+.+.|...+.+.|. +.|++++.....+.+.. .. .....+.|..+...+.+.|.|.|.|..|.....
T Consensus 343 ~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~ 422 (1205)
T KOG0613|consen 343 SVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTI 422 (1205)
T ss_pred eeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCccccc
Confidence 44557788899999999999998 99999876554432111 11 112368899999999999999999999988655
Q ss_pred EEEEE
Q psy10160 213 VTIRV 217 (558)
Q Consensus 213 ~~l~V 217 (558)
....|
T Consensus 423 ~~~~v 427 (1205)
T KOG0613|consen 423 AESTV 427 (1205)
T ss_pred chhhc
Confidence 44444
|
|
| >PHA03052 Hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.48 E-value=4.6 Score=29.05 Aligned_cols=35 Identities=37% Similarity=0.703 Sum_probs=27.1
Q ss_pred CceEeeCCCcEEEEeEee-ccC--CCeEEEEECCEEec
Q psy10160 137 ETQVFGVGSDISIPCDVD-GYP--IPQVFWYKDGQVIE 171 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~-g~P--~p~i~W~~~g~~l~ 171 (558)
....+..|+.+++.|++. |.| .+.+.|.-|+..+.
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 556678899999999984 333 34689999998883
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 558 | ||||
| 3e04_A | 490 | Crystal Structure Of Human Fumarate Hydratase Lengt | 5e-98 | ||
| 3gtd_A | 482 | 2.4 Angstrom Crystal Structure Of Fumarate Hydratas | 3e-87 | ||
| 3tv2_A | 459 | Structure Of A Class Ii Fumarate Hydratase From Bur | 2e-86 | ||
| 1yfm_A | 488 | Recombinant Yeast Fumarase Length = 488 | 1e-85 | ||
| 1fur_A | 467 | Fumarase Mutant H188n With Bound Substrate L-Malate | 2e-78 | ||
| 1fuo_A | 467 | Fumarase C With Bound Citrate Length = 467 | 2e-78 | ||
| 2fus_A | 467 | Mutations Of Fumarase That Distinguish Between The | 2e-78 | ||
| 4hgv_A | 495 | Crystal Structure Of A Fumarate Hydratase Length = | 2e-78 | ||
| 1fup_A | 472 | Fumarase With Bound Pyromellitic Acid Length = 472 | 2e-78 | ||
| 1kq7_A | 467 | E315q Mutant Form Of Fumarase C From E.Coli Length | 4e-78 | ||
| 1vdk_A | 466 | Crystal Structure Of Fumarase From Thermus Thermoph | 3e-65 | ||
| 3qbp_A | 478 | Crystal Structure Of Fumarase Fum From Mycobacteriu | 7e-52 | ||
| 4adl_A | 495 | Crystal Structures Of Rv1098c In Complex With Malat | 1e-51 | ||
| 3no9_A | 475 | Crystal Structure Of Apo Fumarate Hydratase From My | 2e-51 | ||
| 4apa_A | 474 | Crystal Structure Of Mycobacterium Tuberculosis Fum | 4e-51 | ||
| 4apb_A | 474 | Crystal Structure Of Mycobacterium Tuberculosis Fum | 8e-51 | ||
| 3rd8_A | 489 | Crystal Structure Of Fumarate Hydratase Class Ii My | 3e-50 | ||
| 1j3u_A | 468 | Crystal Structure Of Aspartase From Bacillus Sp. Ym | 2e-49 | ||
| 3rrp_A | 471 | Crystal Structure Of Fumarate Hydratase Fum From My | 4e-49 | ||
| 3ocf_A | 478 | Crystal Structure Of Fumarate Lyase:delta Crystalli | 8e-43 | ||
| 3oce_A | 474 | Crystal Structure Of Fumarate Lyase:delta Crystalli | 1e-42 | ||
| 1jsw_A | 478 | Native L-Aspartate Ammonia Lyase Length = 478 | 1e-34 | ||
| 3r6y_A | 401 | Crystal Structure Of Chymotrypsin-Treated Aspartase | 1e-33 | ||
| 1qz1_A | 291 | Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam | 1e-07 | ||
| 3p3y_A | 404 | Crystal Structure Of Neurofascin Homophilic Adhesio | 6e-07 | ||
| 3b43_A | 570 | I-band Fragment I65-i70 From Titin Length = 570 | 7e-07 | ||
| 2rjm_A | 284 | 3ig Structure Of Titin Domains I67-I69 E-To-A Mutat | 5e-06 | ||
| 2rik_A | 284 | I-Band Fragment I67-I69 From Titin Length = 284 | 5e-06 | ||
| 1ie5_A | 107 | Nmr Structure Of The Third Immunoglobulin Domain Fr | 6e-06 | ||
| 1tnm_A | 100 | Tertiary Structure Of An Immunoglobulin-Like Domain | 8e-06 | ||
| 1nct_A | 106 | Titin Module M5, N-Terminally Extended, Nmr Length | 8e-06 | ||
| 3v2a_R | 772 | Vegfr-2VEGF-A Complex Structure Length = 772 | 2e-05 | ||
| 3kvq_A | 108 | Crystal Structure Of Vegfr2 Extracellular Domain D7 | 3e-05 | ||
| 2iep_A | 192 | Crystal Structure Of Immunoglobulin-Like Domains 1 | 4e-05 | ||
| 2yd9_A | 304 | Crystal Structure Of The N-Terminal Ig1-3 Module Of | 5e-05 | ||
| 3dmk_A | 816 | Crystal Structure Of Down Syndrome Cell Adhesion Mo | 5e-05 | ||
| 2kdg_A | 100 | Solution Structure Of The 1st Ig Domain Of Myotilin | 7e-05 | ||
| 2a38_A | 194 | Crystal Structure Of The N-Terminus Of Titin Length | 8e-05 | ||
| 1ya5_A | 201 | Crystal Structure Of The Titin Domains Z1z2 In Comp | 8e-05 | ||
| 2lqr_A | 108 | Nmr Structure Of Ig3 Domain Of Palladin Length = 10 | 8e-05 | ||
| 2e7c_A | 118 | Solution Structure Of The 6th Ig-Like Domain From H | 9e-05 | ||
| 2eo9_A | 118 | Solution Structure Of The Fifth Ig-Like Domain From | 1e-04 | ||
| 2dm2_A | 110 | Solution Structure Of The First Ig Domain Of Human | 1e-04 | ||
| 2yd4_A | 210 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 1e-04 | ||
| 2yd2_A | 214 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 2e-04 | ||
| 2yd3_A | 202 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 2e-04 | ||
| 2xy1_A | 192 | Crystal Structure Of Ncam2 Ig3-4 Length = 192 | 2e-04 | ||
| 3pxh_A | 201 | Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt | 2e-04 | ||
| 2yd1_A | 212 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 2e-04 | ||
| 3pxj_A | 210 | Tandem Ig Repeats Of Dlar Length = 210 | 2e-04 | ||
| 2j8h_A | 197 | Structure Of The Immunoglobulin Tandem Repeat A168- | 2e-04 | ||
| 2ill_A | 195 | Anomalous Substructure Of Titin-A168169 Length = 19 | 2e-04 | ||
| 3laf_A | 403 | Structure Of Dcc, A Netrin-1 Receptor Length = 403 | 2e-04 | ||
| 2dm3_A | 110 | Solution Structure Of The Second Ig Domain Of Human | 3e-04 | ||
| 2nzi_A | 305 | Crystal Structure Of Domains A168-A170 From Titin L | 4e-04 | ||
| 2v5t_A | 189 | Crystal Structure Of Ncam2 Ig2-3 Length = 189 | 4e-04 | ||
| 1rhf_A | 182 | Crystal Structure Of Human Tyro3-D1d2 Length = 182 | 4e-04 | ||
| 2wim_A | 291 | Crystal Structure Of Ncam2 Ig1-3 Length = 291 | 5e-04 | ||
| 1fhg_A | 154 | High Resolution Refinement Of Telokin Length = 154 | 5e-04 | ||
| 1cs6_A | 382 | N-terminal Fragment Of Axonin-1 From Chicken Length | 6e-04 | ||
| 3c8t_A | 451 | Crystal Structure Of Fumarate Lyase From Mesorhizob | 6e-04 | ||
| 1tlk_A | 154 | X-Ray Structure Determination Of Telokin, The C-Ter | 7e-04 | ||
| 2yd5_A | 214 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 8e-04 |
| >pdb|3E04|A Chain A, Crystal Structure Of Human Fumarate Hydratase Length = 490 | Back alignment and structure |
|
| >pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From Rickettsia Prowazekii Length = 482 | Back alignment and structure |
|
| >pdb|3TV2|A Chain A, Structure Of A Class Ii Fumarate Hydratase From Burkholderia Pseudomallei Length = 459 | Back alignment and structure |
|
| >pdb|1YFM|A Chain A, Recombinant Yeast Fumarase Length = 488 | Back alignment and structure |
|
| >pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At Putative Activator Site Length = 467 | Back alignment and structure |
|
| >pdb|1FUO|A Chain A, Fumarase C With Bound Citrate Length = 467 | Back alignment and structure |
|
| >pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active Site And A Nearby Dicarboxylic Acid Binding Site Length = 467 | Back alignment and structure |
|
| >pdb|4HGV|A Chain A, Crystal Structure Of A Fumarate Hydratase Length = 495 | Back alignment and structure |
|
| >pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid Length = 472 | Back alignment and structure |
|
| >pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli Length = 467 | Back alignment and structure |
|
| >pdb|1VDK|A Chain A, Crystal Structure Of Fumarase From Thermus Thermophilus Hb8 Length = 466 | Back alignment and structure |
|
| >pdb|3QBP|A Chain A, Crystal Structure Of Fumarase Fum From Mycobacterium Marinum Length = 478 | Back alignment and structure |
|
| >pdb|4ADL|A Chain A, Crystal Structures Of Rv1098c In Complex With Malate Length = 495 | Back alignment and structure |
|
| >pdb|3NO9|A Chain A, Crystal Structure Of Apo Fumarate Hydratase From Mycobacterium Tuberculosis Length = 475 | Back alignment and structure |
|
| >pdb|4APA|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (Rv1098c) S318a In Apo Form Length = 474 | Back alignment and structure |
|
| >pdb|4APB|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase ( Rv1098c) S318c In Complex With Fumarate Length = 474 | Back alignment and structure |
|
| >pdb|3RD8|A Chain A, Crystal Structure Of Fumarate Hydratase Class Ii Mycobacterium Smegmatis Length = 489 | Back alignment and structure |
|
| >pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1 Length = 468 | Back alignment and structure |
|
| >pdb|3RRP|A Chain A, Crystal Structure Of Fumarate Hydratase Fum From Mycobacterium Abscessus With Malate Bound Length = 471 | Back alignment and structure |
|
| >pdb|3OCF|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From Brucella Melitensis In Native Form Length = 478 | Back alignment and structure |
|
| >pdb|3OCE|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From Brucella Melitensis Bound To Cobalt Length = 474 | Back alignment and structure |
|
| >pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase Length = 478 | Back alignment and structure |
|
| >pdb|3R6Y|A Chain A, Crystal Structure Of Chymotrypsin-Treated Aspartase From Bacillus Sp. Ym55-1 Length = 401 | Back alignment and structure |
|
| >pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291 | Back alignment and structure |
|
| >pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404 | Back alignment and structure |
|
| >pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570 | Back alignment and structure |
|
| >pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284 | Back alignment and structure |
|
| >pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284 | Back alignment and structure |
|
| >pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107 | Back alignment and structure |
|
| >pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100 | Back alignment and structure |
|
| >pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106 | Back alignment and structure |
|
| >pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772 | Back alignment and structure |
|
| >pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108 | Back alignment and structure |
|
| >pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192 | Back alignment and structure |
|
| >pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304 | Back alignment and structure |
|
| >pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816 | Back alignment and structure |
|
| >pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100 | Back alignment and structure |
|
| >pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194 | Back alignment and structure |
|
| >pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201 | Back alignment and structure |
|
| >pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin Length = 108 | Back alignment and structure |
|
| >pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human Myosin-Binding Protein C, Fast-Type Length = 118 | Back alignment and structure |
|
| >pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homo1 Length = 118 | Back alignment and structure |
|
| >pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human Palladin Length = 110 | Back alignment and structure |
|
| >pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210 | Back alignment and structure |
|
| >pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214 | Back alignment and structure |
|
| >pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202 | Back alignment and structure |
|
| >pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192 | Back alignment and structure |
|
| >pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201 | Back alignment and structure |
|
| >pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212 | Back alignment and structure |
|
| >pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210 | Back alignment and structure |
|
| >pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197 | Back alignment and structure |
|
| >pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195 | Back alignment and structure |
|
| >pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403 | Back alignment and structure |
|
| >pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110 | Back alignment and structure |
|
| >pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305 | Back alignment and structure |
|
| >pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189 | Back alignment and structure |
|
| >pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182 | Back alignment and structure |
|
| >pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291 | Back alignment and structure |
|
| >pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154 | Back alignment and structure |
|
| >pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382 | Back alignment and structure |
|
| >pdb|3C8T|A Chain A, Crystal Structure Of Fumarate Lyase From Mesorhizobium Sp. Bnc1 Length = 451 | Back alignment and structure |
|
| >pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154 | Back alignment and structure |
|
| >pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A Length = 467 | Back alignment and structure |
|---|
Score = 488 bits (1260), Expect = e-170
Identities = 144/219 (65%), Positives = 177/219 (80%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
+ A ++A +T PF +APNKFEALA DALV+ GAL +A SLMKIAND+R+LASGPRC
Sbjct: 245 RVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRC 304
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
G+GE+S+PENEPGSSIMPGKVNPTQCEALTM+ QVMGN VA+ +GG++G+FELNVF+P+
Sbjct: 305 GIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPM 364
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
++ N L+S+RL+AD +F C GI N E I++LL+ESLMLVTALN HIGYDKAA+I
Sbjct: 365 VIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEI 424
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AK AHKEG TLK AAL LGYL+E EF+ WV PE M+G
Sbjct: 425 AKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVGSM 463
|
| >3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens} Length = 490 | Back alignment and structure |
|---|
Score = 489 bits (1262), Expect = e-170
Identities = 171/219 (78%), Positives = 196/219 (89%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K AAK+A LTGLPF +APNKFEALAAHDALVE+SGA+NT A SLMKIANDIRFL SGPR
Sbjct: 272 KVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRS 331
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGEL LPENEPGSSIMPGKVNPTQCEA+TMVAAQVMGNHVAVT+GGSNGHFELNVFKP+
Sbjct: 332 GLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVFKPM 391
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
++ NVL S RL+ D++ +FT+ CV GI AN E I++L++ESLMLVTALNPHIGYDKAAKI
Sbjct: 392 MIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKI 451
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AKTAHK G+TLK A++LGYLT E+F++WV P+DMLGPK
Sbjct: 452 AKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGPK 490
|
| >1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1 Length = 488 | Back alignment and structure |
|---|
Score = 489 bits (1260), Expect = e-169
Identities = 152/219 (69%), Positives = 179/219 (81%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K A +I++ TGL F++APN+FEALAAHDA+VE SGALNT+A SL KIA DIR+L SGPRC
Sbjct: 270 KIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRC 329
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
G EL LPENEPGSSIMPGKVNPTQ EALT V QVMGN+ A+T GS G FELNVFKP+
Sbjct: 330 GYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFKPV 389
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
+++N+L SIRLI D+A +F CV GI ANE IH LL +SLMLVTALNP IGYD A+K+
Sbjct: 390 MIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAASKV 449
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AK AHK+G TLK +AL+LG LTE+EF++WVVPE MLGPK
Sbjct: 450 AKNAHKKGITLKESALELGVLTEKEFDEWVVPEHMLGPK 488
|
| >1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1 Length = 466 | Back alignment and structure |
|---|
Score = 487 bits (1256), Expect = e-169
Identities = 125/219 (57%), Positives = 154/219 (70%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
A +AE TGLPF+ A N+F ALAAHD LV V GA+ T+A +LMKI ND+R+LASGP
Sbjct: 245 LVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYA 304
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
G+GE+++P NEPGSSIMPGKVNPTQ EALTMV +V GN V GS G+F+LNV+KP+
Sbjct: 305 GIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKPV 364
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
+ + L SI L+AD+ +F GI N E I L ++ ML TALN IGYDKAA+I
Sbjct: 365 MAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNKAIGYDKAAEI 424
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
K A KE TLK AAL+LGYLTEEEF++ VVP + P
Sbjct: 425 VKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLAKPH 463
|
| >3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii} Length = 482 | Back alignment and structure |
|---|
Score = 481 bits (1241), Expect = e-167
Identities = 156/216 (72%), Positives = 174/216 (80%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K A K+AE T PFK+APNKFE+LAAHDALVE SG LNT+AVSLMKIANDIR L SGPRC
Sbjct: 266 KFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGSGPRC 325
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGEL LPENEPGSSIMPGKVNPTQ EALTMV QVMGNHV VTI GSNGH ELNVFKP+
Sbjct: 326 GLGELHLPENEPGSSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGSNGHLELNVFKPV 385
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
I+ N+L+SI L++DS +F CV G+ N I+ L +SLMLVT LNPHIGYD AAKI
Sbjct: 386 IIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINTLRDKSLMLVTVLNPHIGYDNAAKI 445
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDML 555
AK AHK G TLK AA KL +L+EEEF+K VVPE M+
Sbjct: 446 AKEAHKYGITLKEAAKKLNFLSEEEFDKIVVPEKMI 481
|
| >4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A Length = 495 | Back alignment and structure |
|---|
Score = 471 bits (1214), Expect = e-162
Identities = 104/224 (46%), Positives = 145/224 (64%), Gaps = 5/224 (2%)
Query: 340 KCAAKIAELTGLP-FKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPR 398
+ A + TGL ++A N FEA AA D LVE SGAL T+AVSL KIANDIR++ SGP
Sbjct: 266 RVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPL 325
Query: 399 CGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKP 458
GL E+ LP+ +PGSSIMPGKVNP EA+T VAAQV+GN A+ GG+NG FELNV+ P
Sbjct: 326 TGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNVYIP 385
Query: 459 LIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAK 518
++ N+L S +L+ + + F +C++G+ AN E++ RL S +VT LN IGY++AA
Sbjct: 386 MMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEAAA 445
Query: 519 IAKTAHKEGTTLKVAALKLGY----LTEEEFNKWVVPEDMLGPK 558
+AK A KE T++ + G L+ E+ ++ + M +
Sbjct: 446 VAKQALKERKTIRQTVIDRGLIGDRLSIEDLDRRLDVLAMAKAE 489
|
| >3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} PDB: 1j3u_A 3r6v_A 3r6y_A Length = 468 | Back alignment and structure |
|---|
Score = 452 bits (1165), Expect = e-155
Identities = 91/219 (41%), Positives = 140/219 (63%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
+A+ +G P +SA + +A D EVS AL +++ KIAND+R +ASGPR
Sbjct: 245 IVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRA 304
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GL E+ LP +PGSSIMPGKVNP E + VA QV GN + +T G FELNV +P+
Sbjct: 305 GLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPV 364
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
+ N+++SI ++ + +FT+ C+ GI ANEE + + +S+ ++TA+NPH+GY+ AAK+
Sbjct: 365 LFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYETAAKL 424
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
A+ A+ G +++ +K G LTEE+ N+ + P +M+ P
Sbjct: 425 AREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHPG 463
|
| >1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1 Length = 478 | Back alignment and structure |
|---|
Score = 443 bits (1143), Expect = e-152
Identities = 81/219 (36%), Positives = 125/219 (57%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
K+AE+TG P A + EA + A V V GAL +AV + KI ND+R L+SGPR
Sbjct: 248 LAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRA 307
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GL E++LPE + GSSIMP KVNP E + V +V+GN VT+ G +LNV +P+
Sbjct: 308 GLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPV 367
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
I + S+ ++ ++ +KC++GI AN+E ++ S+ +VT LNP IG+ +
Sbjct: 368 IGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIV 427
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
K + G +++ L+ G LTE E + ++++ P
Sbjct: 428 GKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHPA 466
|
| >3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A Length = 478 | Back alignment and structure |
|---|
Score = 433 bits (1116), Expect = e-148
Identities = 93/215 (43%), Positives = 128/215 (59%), Gaps = 1/215 (0%)
Query: 340 KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRC 399
+ ++++++G+ K+ N EA A V SG L +AV L KIAND+R L+SGPR
Sbjct: 265 QAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRS 324
Query: 400 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPL 459
GLGE+ LP +PGSSIMPGKVNP E++ V QV+GN + VT+ +G +LN F+PL
Sbjct: 325 GLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEPL 384
Query: 460 IVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKI 519
IV N+L S+RL+ + T ++CV GI AN E ES+ L TAL P +GY +AA+I
Sbjct: 385 IVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVVGYARAAEI 444
Query: 520 AKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDM 554
AK A G T+ A+ G L + P M
Sbjct: 445 AKQALASGQTVMEVAISKG-LDASALTIMLDPLRM 478
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 96.2 bits (239), Expect = 6e-22
Identities = 36/237 (15%), Positives = 64/237 (27%), Gaps = 56/237 (23%)
Query: 6 SENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGT 65
SE + L + E GAY+C+ ++V + PS + G
Sbjct: 53 SERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDED-----GE 107
Query: 66 ILSSAFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGG 125
+ ++ +P T+
Sbjct: 108 DEAEDTGVDTGAPYWTRPE----------------------------------------- 126
Query: 126 YLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT---ES 182
+ + + + C G P P + W K+G+ + I +
Sbjct: 127 -------RMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ 179
Query: 183 NRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIV 239
L + +D G Y CV N + S T+ V H L AN ++
Sbjct: 180 WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL 236
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 76.2 bits (187), Expect = 3e-15
Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 3/102 (2%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESNRLH 186
VP E VFG G + + C G P+ W KDG + + L
Sbjct: 7 VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSE-RVLVGPQR-LQ 64
Query: 187 INQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRD 228
+ A+ DSG Y C + + +
Sbjct: 65 VLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDG 106
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 69.3 bits (169), Expect = 5e-13
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 15/105 (14%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG---------------QVIEN 172
P+ Q +GSD+ C V P + W K V++
Sbjct: 221 RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKT 280
Query: 173 DGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
G + E L ++ D+GEY C+A NS ++ + V
Sbjct: 281 AGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV 325
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 8e-22
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN-RLHINQANATDS 195
+T + VG +++ G P PQV W K G ++ VH R ++ + + QA +DS
Sbjct: 32 QTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDS 91
Query: 196 GEYRCVASNSYTSDENAVTIRV 217
GEY D + IRV
Sbjct: 92 GEYELSVQIENMKDTATIRIRV 113
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 2e-21
Identities = 22/85 (25%), Positives = 33/85 (38%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATD 194
Q V + C G P+P + W KDG ++ + E+ L I A D
Sbjct: 14 GPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGD 73
Query: 195 SGEYRCVASNSYTSDENAVTIRVEG 219
+G Y C+AS + I V+
Sbjct: 74 TGRYTCIASTPSGEATWSAYIEVQE 98
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 3e-21
Identities = 43/265 (16%), Positives = 72/265 (27%), Gaps = 53/265 (20%)
Query: 5 RSENYELNKN--MLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPS--EKVADPN 59
E ++ L I + G Y + G+ + +A +V
Sbjct: 50 VDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKI 109
Query: 60 AIDY----------GTILSSAFPSESASPVVT--------------QTTTT--------- 86
A+ G L S V +T T
Sbjct: 110 ALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQIN 169
Query: 87 ----------TTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITL 136
E T + A LK+ +
Sbjct: 170 EPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLP 229
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN----RLHINQANA 192
+ G +++ C+V G P P+V W K+ + + +D H + IN +
Sbjct: 230 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDD-HCNLKFEAGRTAYFTINGVST 288
Query: 193 TDSGEYRCVASNSYTSDENAVTIRV 217
DSG+Y V N Y S+ + T+ V
Sbjct: 289 ADSGKYGLVVKNKYGSETSDFTVSV 313
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 4e-15
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 136 LETQVFGVGSDISIPCDVDGY-PIPQVFWYKDGQVIENDGVHYRITESN-RLHINQANAT 193
L +V ++ + C V + WYKD + I D + + L I + +
Sbjct: 14 LSWEVT-GECNVLLKCKVANIKKETHIVWYKDEREISVDE-KHDFKDGICTLLITEFSKK 71
Query: 194 DSGEYRCVASNSYTSDENAVTIRVEG 219
D+G Y + + D++ + + E
Sbjct: 72 DAGIYEVILKDDRGKDKSRLKLVDEA 97
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 8e-14
Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 14/105 (13%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDG----------YPIPQVFWYKDGQVIENDGVHY 177
++ + + ++ +D+ I +G +V W +G I
Sbjct: 97 AFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD-RV 155
Query: 178 RITESNR---LHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
+ + L IN+ D G+Y + T + V + +
Sbjct: 156 KTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA 200
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 90.7 bits (225), Expect = 3e-21
Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 1/93 (1%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ-VIENDGVHYRITESNRL 185
+ Q F G D I CDV P + W G+ VI V + + +N L
Sbjct: 98 FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL 157
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
I TD G YRC + N I+V
Sbjct: 158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 5e-15
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYP-IPQVFWYK-DGQVIENDGVHYRIT----ES 182
++V+I VG C V G + W+ +G+ + + + +S
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 183 NRLHINQANATDSGEYRCVASNSYTSDENA-VTIRV 217
+ L I AN D+G Y+CV + + A V +++
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 97
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 4e-21
Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 4/93 (4%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANA 192
E Q G + + V G W K + I+ H ++ S +L I A
Sbjct: 14 PEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESE-HMKVENSENGSKLTILAARQ 72
Query: 193 TDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
G Y + N S + V + V P+
Sbjct: 73 EHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPA 105
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 7e-21
Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 4/94 (4%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---R 184
+ K+ G ++ D G P P W + +
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAP-ELLVDAKSSTTS 59
Query: 185 LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ A DSG Y+ N DE + V+
Sbjct: 60 IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 1e-20
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYR 199
G D+ + V G P P V W ++ Q + D + RL I A D+G Y
Sbjct: 19 EGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYT 78
Query: 200 CVASNSYTSDENAVTIRVEG 219
C A N Y + + + V G
Sbjct: 79 CKAVNEYGARQCEARLEVRG 98
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 1e-20
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR-LHINQANATD 194
LE Q +G I + C G P PQ+ W+KD + + D + + NR L I + D
Sbjct: 17 LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS-GIVLKDGNRNLTIRRVRKED 75
Query: 195 SGEYRCVASNSYTSDENAVTIRVEG 219
G Y C A + + +EG
Sbjct: 76 EGLYTCQACSVLGCAKVEAFFIIEG 100
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 4e-20
Identities = 21/84 (25%), Positives = 31/84 (36%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDS 195
Q V + C G P+P + W K+G I E L I +D+
Sbjct: 15 PANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDT 74
Query: 196 GEYRCVASNSYTSDENAVTIRVEG 219
G Y CVA++S + + V
Sbjct: 75 GTYTCVATSSSGETSWSAVLDVTE 98
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 93.5 bits (232), Expect = 5e-20
Identities = 49/250 (19%), Positives = 87/250 (34%), Gaps = 42/250 (16%)
Query: 4 VRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNA-I 61
V ++ + L IK E G Y C N +G V +T+ A S K+ P +
Sbjct: 296 VLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTV 355
Query: 62 DYGTILS-----SAFPSES------ASPVVTQTTTTTTEATSPH---VYAALTHCVPWSN 107
D+G + P ++ + + E+ +Y
Sbjct: 356 DFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMY----------- 404
Query: 108 VCLFGARSGYLKETQN-----GGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVF 162
C R+ + GG P + + + G + + C G P P++
Sbjct: 405 QCF--VRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEIS 462
Query: 163 WYKDGQVIENDG-------VHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTI 215
W DG+ I N+ V + L+I +A D G Y+C+A + E++ +
Sbjct: 463 WELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKL 522
Query: 216 RVEGI-FIHP 224
V G+ +I
Sbjct: 523 NVYGLPYIRQ 532
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 87.7 bits (217), Expect = 3e-18
Identities = 47/243 (19%), Positives = 74/243 (30%), Gaps = 45/243 (18%)
Query: 16 LTIKRVEPER-LGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAFPSE 74
L I+ V PE +Y C+ + L + T L + +P + ++S A
Sbjct: 201 LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRL---VITEPISSAVPKVVSLAKFDM 257
Query: 75 SASPVVTQTTTTTTEAT---SPHVY-------AALTHCVPWSNVCLFGARSGYLKETQ-- 122
+ T A P V ++ + + +K+
Sbjct: 258 KT-YSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 316
Query: 123 -NGGY-------------------LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVF 162
+G Y P+ I TQ G C G PI V
Sbjct: 317 DSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS 376
Query: 163 WYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFI 222
W KDG+ I + + L I D G Y+C N S E + +++ G F
Sbjct: 377 WMKDGKAIGHS--------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFD 428
Query: 223 HPS 225
P
Sbjct: 429 PPV 431
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 85.0 bits (210), Expect = 2e-17
Identities = 47/259 (18%), Positives = 76/259 (29%), Gaps = 43/259 (16%)
Query: 3 QVRSENYELNKNMLTIKRVEPERL------GAYTCQAYNGLGRAVSWTVTLQA----LPS 52
V + L E Y C A N G +S V ++A
Sbjct: 83 DVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYE 142
Query: 53 EKVADPNAIDYGT-ILSSAFPSESASPVVT-------QTTTTTTEATSPHVYAALT---- 100
V + I + ++ PS A V + +
Sbjct: 143 ADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELH 202
Query: 101 -------------HCV---PWSNVCLFGARSGYLKETQNGGYLVPVKVNIT-LETQVFGV 143
C + A G L T+ VP V++ + + +
Sbjct: 203 IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSG 262
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHY---RITESNR-LHINQANATDSGEYR 199
S +++ C GYP+P WYK + R+ + + L I A DSG+Y
Sbjct: 263 SSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYL 322
Query: 200 CVASNSYTSDENAVTIRVE 218
CV +NS + + V
Sbjct: 323 CVVNNSVGGESVETVLTVT 341
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 2e-16
Identities = 46/235 (19%), Positives = 70/235 (29%), Gaps = 46/235 (19%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL--QALPSEKVADPNAIDYGTILS----- 68
L I V G Y C A + +G A + L LP + + AI G L
Sbjct: 492 LNITSVHANDGGLYKCIAKSKVGVA-EHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPV 550
Query: 69 SAFPSESAS--------------PVVTQTTTTTTEATSPH---VYAALTHCVPWSNVCLF 111
+ +P +S V T Y CV
Sbjct: 551 AGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATY----TCV-------- 598
Query: 112 GARSGYLKETQNGGYLV----PVKVNITLETQVFGVGSDISIPCDVDGYPIP-QVFWYKD 166
A++ + + P + E VG +++ C V G +P + W D
Sbjct: 599 -AKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLD 657
Query: 167 GQVIENDG---VHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
GQ I D + L I A+ +G + C A N + + V
Sbjct: 658 GQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY 712
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 2e-15
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQAN-A 192
+E + G + + C V GYPI + W +D + + + ++ + L I
Sbjct: 531 RQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINR-KQKVFPNGTLIIENVERN 589
Query: 193 TDSGEYRCVASNSYTSDENA---VTIRVEGIFIHPSCRDLPL 231
+D Y CVA N V + V I + + P
Sbjct: 590 SDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPA 631
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 9e-15
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT-----ES 182
VP + + + F GSD + C DG+P PQV W K + + + E
Sbjct: 713 VPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEE 772
Query: 183 NRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
LH++ T+ G Y C A N S +AV +
Sbjct: 773 GTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMIS 807
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 2e-12
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYK-DGQVIENDGVHYRITESNRLHI 187
PV + F + I C G P+P++ W + DG + + +I+ +L
Sbjct: 39 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVF 98
Query: 188 NQANATD------SGEYRCVASNSY-TSDENAVTIRV 217
A D + Y C+A N + + V +R
Sbjct: 99 PPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA 135
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 5e-11
Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 8/111 (7%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDV---DGYPIPQVFWYKDGQVIENDGVH----YRIT 180
V + + G+ I C + + V W+ D + G Y +
Sbjct: 137 VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL 196
Query: 181 ESNRLHINQANATDS-GEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLP 230
S LHI + D Y+C + T + + + P +P
Sbjct: 197 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVP 247
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 7e-04
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 5 RSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+S+N + + L + ++ G Y C+A NG+G +S + +
Sbjct: 764 KSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMIS 807
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 5e-20
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH-YRITESNRLHINQANAT 193
+ Q F G D + C V P P V W + + + + + +N L I N +
Sbjct: 8 VVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKS 67
Query: 194 DSGEYRCVASNSYTSDENAVTIRVE 218
D G YRC + + I V
Sbjct: 68 DEGIYRCEGRVEARGEIDFRDIIVI 92
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 3e-19
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
Query: 113 ARSGYLKETQNGGYLVPVKV------NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD 166
R E +V V V G +++ C G P P + W+++
Sbjct: 76 GRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRN 135
Query: 167 GQVIENDGVHYRITESNR-LHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
G++IE + Y + SN L + +D G Y C A+N DE ++V
Sbjct: 136 GKLIEENE-KYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 90.7 bits (225), Expect = 7e-20
Identities = 42/229 (18%), Positives = 65/229 (28%), Gaps = 33/229 (14%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAFPSES 75
L I +VE +G YTC N + V P D +Y + FP E+
Sbjct: 159 LYIAKVEKSDVGNYTCVVTNTVTNH---KVLGPPTPLILRNDGVMGEYEPKIEVQFP-ET 214
Query: 76 ASPVVTQTTTTTTEAT---SPHV--YAALTHCVPWSNVCLFGARSGYLKETQ---NGGY- 126
T A P + A + + Q G Y
Sbjct: 215 VPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYE 274
Query: 127 ------------------LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ 168
+ + + C +G P P W K+G
Sbjct: 275 CVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGD 334
Query: 169 VIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ E L+I N +D+G Y+CVA N + ++ + V
Sbjct: 335 PLLTRD--RIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 6e-19
Identities = 47/243 (19%), Positives = 69/243 (28%), Gaps = 31/243 (12%)
Query: 5 RSENYELNKNMLTIKRV-EPERLGAYTCQAYNGLGRAVSWTVTLQA--LPSEKVADPNAI 61
Y + L I + + G Y C A N G VS LQ L + K + +
Sbjct: 53 MDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTV 112
Query: 62 D----YGTILSSAFPSESASPVVTQTTTTTTEATSPHVYAALT----------------- 100
G +L P S + +
Sbjct: 113 SVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNY 172
Query: 101 HCVPWSNVCLFGARSGY----LKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGY 156
CV + V L+ G P ET G+ + + C G
Sbjct: 173 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGN 232
Query: 157 PIPQVFWYK-DGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTI 215
P+P + W + DG+ I R + L I D+G Y CVA NS + +
Sbjct: 233 PVPTILWRRADGKPIARKA--RRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290
Query: 216 RVE 218
Sbjct: 291 TFY 293
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 6e-13
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHI-NQANATDSGEYRCVA 202
+ + C+V G P P + W +G ++ L I N D+G Y+C+A
Sbjct: 23 EKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIA 82
Query: 203 SNSYTSDE-NAVTIRVEGI 220
+NS+ + ++ +
Sbjct: 83 TNSFGTIVSREAKLQFAYL 101
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 8e-20
Identities = 38/213 (17%), Positives = 66/213 (30%), Gaps = 60/213 (28%)
Query: 9 YELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILS 68
+ L I P G Y + ++G TV L S + D ++ +
Sbjct: 54 VTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQK-TVDL----SGQAYDEAYAEFQRLKQ 108
Query: 69 SAFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLV 128
+A ++ + V+ G
Sbjct: 109 AAIAEKNRARVLG-------------------------------------------GLPD 125
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR---L 185
V + G +++ C+V G P P+V W K+ + + E+ R
Sbjct: 126 VVTIQ---------EGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYF 176
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
IN + DSG+Y V N Y S+ + T+ V
Sbjct: 177 TINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 73.8 bits (181), Expect = 3e-15
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 5/81 (6%)
Query: 143 VGSDISIPCDVDGY-PIPQVFWYKDGQVIENDGVHYRITESNR---LHINQANATDSGEY 198
I + V Y +V W +G I + + L IN+ D G+Y
Sbjct: 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD-RVKTGVTGEQIWLQINEPTPNDKGKY 74
Query: 199 RCVASNSYTSDENAVTIRVEG 219
+ T + V + +
Sbjct: 75 VMELFDGKTGHQKTVDLSGQA 95
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 9e-20
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 10/100 (10%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR-- 184
+ IP V G P P + W+ +G ++
Sbjct: 2 HFAPTITFLESPTS---DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHT 58
Query: 185 -----LHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
L ++ ++G+Y +A N Y DE ++ G
Sbjct: 59 EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 1e-19
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQAN 191
L+ S G P P W KDG+ I G Y+++E L I++ +
Sbjct: 12 GLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGG-KYKLSEDKGGFFLEIHKTD 70
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRVEGI 220
+DSG Y C NS S ++ + ++ I
Sbjct: 71 TSDSGLYTCTVKNSAGSVSSSCKLTIKAI 99
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 1e-19
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANA 192
+ + G + +V P +V WY +G ++ T ++ L I +
Sbjct: 15 MRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESS-KIHYTNTSGVLTLEILDCHT 73
Query: 193 TDSGEYRCVASNSYTSDENAVTIRVEG 219
DSG YR V +N + T+ V G
Sbjct: 74 DDSGTYRAVCTNYKGEASDYATLDVTG 100
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 90.0 bits (223), Expect = 1e-19
Identities = 33/261 (12%), Positives = 65/261 (24%), Gaps = 48/261 (18%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ-ALPSEKVADPNA 60
Q + ++ L R + G Y C A G A S ++ + A +
Sbjct: 50 WQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHE 109
Query: 61 I---------------------------DYGTILSSAFPSESASPVVTQTT-------TT 86
+A ++ + T
Sbjct: 110 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVT 169
Query: 87 TTEATSPHVYAALTHCVPWSNV----CLFGARSGYLKETQNGGYLVPVKVNITLETQVFG 142
+ + + Y C + + N GY + +
Sbjct: 170 KEDVSDIYKY----VCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAK 225
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDG----VHYRITESNRLHINQANATDSGEY 198
G I C P+ ++K+G+ + + + T RL D G Y
Sbjct: 226 AGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVY 285
Query: 199 RCVASNSYTSDE-NAVTIRVE 218
C N + +++ + V
Sbjct: 286 TCEVDNGVGKPQKHSLKLTVV 306
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 83.8 bits (207), Expect = 1e-17
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVA 202
G D++IPC V G P P V W + + + +T+S L I D G Y C A
Sbjct: 323 QGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG--RATVTDSG-LVIKGVKNGDKGYYGCRA 379
Query: 203 SNSYTSDENAVTIRV 217
+N + ++V
Sbjct: 380 TNEHGDKYFETLVQV 394
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 6e-14
Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 3/88 (3%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIENDGVHYRITESN-RLHINQANAT 193
+F + + C ++G + W KDG+ + + + L + A+
Sbjct: 13 PAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQAS 72
Query: 194 DSGEYRCVASNSY-TSDENAVTIRVEGI 220
D G Y+C A + ++ R +
Sbjct: 73 DEGHYQCFAETPAGVASSRVISFRKTYL 100
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 91.7 bits (227), Expect = 1e-19
Identities = 41/250 (16%), Positives = 65/250 (26%), Gaps = 46/250 (18%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNAIDYGTILS-- 68
NK + T+ Y C+A N +GR + + P + +S
Sbjct: 511 NKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLW 570
Query: 69 ---SAFPSESASPVVT-----QTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGY--- 117
+T P + N +F +
Sbjct: 571 CTADRSTF----ENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILI 626
Query: 118 -----LKETQNGGY-----------------------LVPVKVNITLETQVFGVGSDISI 149
G Y V + LE Q +G I +
Sbjct: 627 MELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEV 686
Query: 150 PCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD 209
C G P PQ+ W+KD + + D + L I + D G Y C A +
Sbjct: 687 SCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCA 746
Query: 210 ENAVTIRVEG 219
+ +EG
Sbjct: 747 KVEAFFIIEG 756
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 84.0 bits (207), Expect = 3e-17
Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVA 202
VG + IP GYP P++ WYK+G +E++ + I + L I + + D+G Y +
Sbjct: 344 VGERVRIPAKYLGYPPPEIKWYKNGIPLESN---HTIKAGHVLTIMEVSERDTGNYTVIL 400
Query: 203 SNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEG 241
+N + ++ + + + +++ P + L + G
Sbjct: 401 TNPISKEKQSHVVSLV-VYVPPQIGEKSLISPVDSYQYG 438
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 71.3 bits (174), Expect = 3e-13
Identities = 34/256 (13%), Positives = 65/256 (25%), Gaps = 41/256 (16%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAI 61
++V + L LTI +V GAY C + V +Q S +A +
Sbjct: 74 VEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLAS-VIYVYVQDYRSPFIASVSDQ 132
Query: 62 DYGTILSSA------FPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSN-------- 107
++ P + + +
Sbjct: 133 HGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMI 192
Query: 108 ------VCLFGARSGYLKETQNGGYLVPVKVNIT------LETQVFGVGSDISIPCDVDG 155
C A+ +V V I VG + + C
Sbjct: 193 SYAGMVFCE--AKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTART 250
Query: 156 YPIPQVFWYKDGQVIENDGVHYRITE------------SNRLHINQANATDSGEYRCVAS 203
+ + + ++ + + L I+ +D G Y C AS
Sbjct: 251 ELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS 310
Query: 204 NSYTSDENAVTIRVEG 219
+ + +N+ +RV
Sbjct: 311 SGLMTKKNSTFVRVHE 326
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 65.9 bits (160), Expect = 2e-11
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 7/95 (7%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN--- 183
L +++I + + + I C G W + E V
Sbjct: 29 LDLPRLSIQKDILTIKANTTLQITCR--GQRDLDWLWPNNQSGSEQR-VEVTECSDGLFC 85
Query: 184 -RLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
L I + D+G Y+C + + V ++
Sbjct: 86 KTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQD 120
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 63.2 bits (153), Expect = 1e-10
Identities = 24/225 (10%), Positives = 52/225 (23%), Gaps = 31/225 (13%)
Query: 18 IKRVEPERLGAYTCQAYNGLGRAVSWTVTLQA-----LPSEKVADPNA------------ 60
++ + + C + +V+L N
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLP-SVSLDLPRLSIQKDILTIKANTTLQITCRGQRDL 59
Query: 61 ----IDYGTILSSAFPSESASPVVTQTTTTTTEATSPH--VYAALTHCVPWSNVCLFGAR 114
+ + S + T T + Y C L
Sbjct: 60 DWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAY----KCFY-RETDLASVI 114
Query: 115 SGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWY-KDGQVIEND 173
Y+++ ++ ++ V + + IPC + + D
Sbjct: 115 YVYVQDYRSP-FIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPD 173
Query: 174 GVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
G I + +G C A + S ++ + I V
Sbjct: 174 GNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 218
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 4e-09
Identities = 42/278 (15%), Positives = 72/278 (25%), Gaps = 80/278 (28%)
Query: 8 NYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPS----EKVADPNAID 62
+ + LTI V G YTC A +GL S V + P +
Sbjct: 284 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEAT 343
Query: 63 YGTILS-----SAFPSES-----------ASPVVTQTTT-TTTEATSPH--VYAALTHCV 103
G + +P ++ + T E + Y +
Sbjct: 344 VGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNY----TVI 399
Query: 104 PWSNVCLFGARSGYLKETQNGGYLVPVKV-------NITLETQVFGVGSDISIPCDVDGY 156
+ KE Q+ + V V ++ + G+ ++ C V
Sbjct: 400 ---------LTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAI 450
Query: 157 PIP-QVFWYKDGQ--------------------------------VIENDGVHYRITESN 183
P P + WY + IE + + + E
Sbjct: 451 PPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGK 510
Query: 184 R---LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ A S Y+C A N E ++ V
Sbjct: 511 NKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVT 548
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 2e-19
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANA 192
+++Q G GSD V G P P+ WYK+G IE Y + L I
Sbjct: 12 IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTG 71
Query: 193 TDSGEYRCVASNSYTSDENAVTIRVEG 219
DS A N + + V+
Sbjct: 72 EDSASIMVKAINIAGETSSHAFLLVQA 98
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 2e-19
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---R 184
+ ++ + G CD DG P+P V W + GQV+ +++T +
Sbjct: 13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA-RHQVTTTKYKST 71
Query: 185 LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
I+ A+D G Y V NS E T+ ++
Sbjct: 72 FEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 89.5 bits (222), Expect = 2e-19
Identities = 43/244 (17%), Positives = 73/244 (29%), Gaps = 41/244 (16%)
Query: 9 YELNKNMLTIKRVEPERL-----GAYTCQA-YNGLGRAVSWTVTLQALPSEKVADPNAID 62
+L L I+ + R G Y C+A G +S T + VA P
Sbjct: 72 QQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVM------VAGPLRFL 125
Query: 63 YGTILSSAFPSESAS----------PVVT-----QTTTTTTEATSPHVY----------- 96
T +AF ++ P + Q + V
Sbjct: 126 SQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQ 185
Query: 97 ---AALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDV 153
+ + C + ++ + G + + G D + C V
Sbjct: 186 PGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCV 245
Query: 154 DGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAV 213
GYP P W + +VI+ Y + + L I+ DSG Y CV + + +
Sbjct: 246 SGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASA 305
Query: 214 TIRV 217
+ V
Sbjct: 306 ELTV 309
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 2e-18
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH 186
LVP DI C V G P+P V W K+G V+ +++I + L
Sbjct: 310 LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSD-YFQIVGGSNLR 368
Query: 187 INQANATDSGEYRCVASNSYTSDENAVTIRVE 218
I +D G Y+CVA N + +++ + V
Sbjct: 369 ILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 9e-12
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDG-YPIPQVFWYKDGQVIENDGVHYRITESN--- 183
+ V G ++ + C + +P + W KDG ++ + N
Sbjct: 20 RSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSL 79
Query: 184 ---RLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ ++ + D G Y+C AS + + T +V
Sbjct: 80 LIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKV 116
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 3e-19
Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 1/93 (1%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ-VIENDGVHYRITESNRL 185
+ Q F G D I CDV P + W G+ VI V + + +N L
Sbjct: 98 FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL 157
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
I TD G YRC + N I+V
Sbjct: 158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 1e-16
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG----VHYRITESNRLHINQA 190
++ +G +++ CD DG+P P + W KDG+ IEN+ H +S+ L I
Sbjct: 202 SIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNV 261
Query: 191 NATDSGEYRCVASNSYTSDENAVTIRV 217
+ D EY C+A N + ++ ++V
Sbjct: 262 DKNDEAEYVCIAENKAGEQDASIHLKV 288
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 9e-14
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYP-IPQVFWYK-DGQVIENDGVHYRITESN----R 184
+V+I VG C V G + W+ +G+ + + + ++
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 63
Query: 185 LHINQANATDSGEYRCVASNSYTSDENA-VTIRV 217
L I AN D+G Y+CV + + A V +++
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 97
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 3e-19
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR----LHINQAN 191
+ G +SI G P P + W K +I+N+G HY++ + + N
Sbjct: 111 MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG-HYQVIVTRSFTSLVFPNGVE 169
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRVE 218
D+G Y A N + D+ V + V
Sbjct: 170 RKDAGFYVVCAKNRFGIDQKTVELDVA 196
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 4e-19
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN----RLHINQA 190
L S+ ++ C V G+P P V WY+ G+ I DG+ YRI E +L I
Sbjct: 10 ELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASV 69
Query: 191 NATDSGEYRCVASNSYTSDENAVTIRVE 218
D+ Y+ A+N S ++ VE
Sbjct: 70 TDDDATVYQVRATNQGGSVSGTASLEVE 97
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 4e-19
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN----RLHINQ 189
+++ G + + C + P P++FW ++ ++++ + + + N L I
Sbjct: 20 YKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKD 79
Query: 190 ANATDSGEYRCVASNSYTSDENAVTIRVEGI--FIHP 224
N D+G Y A N + V P
Sbjct: 80 VNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 90.0 bits (223), Expect = 5e-19
Identities = 38/236 (16%), Positives = 69/236 (29%), Gaps = 45/236 (19%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQ-----ALPSEKVADPNAIDYGTILSS 69
L I + G+YTCQA+N + T+ P + N ++ ++
Sbjct: 250 LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVAL 309
Query: 70 AFPSESASPVVT-----QTTTTTTEATSPHVYAALT------------HCVPWSNVCLFG 112
E + Q+ + + LT C
Sbjct: 310 TCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECG--------- 360
Query: 113 ARSGYLKETQNGGYLV----PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ 168
++ + + L P I+ + G ++S+ C P Q W DG
Sbjct: 361 IQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGN 420
Query: 169 VIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHP 224
+ ++ L I+ +SG Y C A+NS + + P
Sbjct: 421 IQQHTQ---------ELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELP 467
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 88.9 bits (220), Expect = 1e-18
Identities = 38/228 (16%), Positives = 71/228 (31%), Gaps = 43/228 (18%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRA---VSWTVTLQALPSEKVADPN---AIDYGTILSS 69
L I + + G YTCQA N T+T+ A + N ++ ++
Sbjct: 428 LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAF 487
Query: 70 AFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSN----------------VCLFGA 113
E+ + + SP + + N VC
Sbjct: 488 TCEPEAQNTTYLWWVNGQSLPVSPRLQ------LSNGNRTLTLFNVTRNDARAYVCG--I 539
Query: 114 RSGYLKETQNGGYLV----PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQV 169
++ + L P I+ + G+++++ C P PQ W +G
Sbjct: 540 QNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIP 599
Query: 170 IENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
++ L I + ++G Y C SN T N++ +
Sbjct: 600 QQHTQ---------VLFIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 83.5 bits (206), Expect = 5e-17
Identities = 38/222 (17%), Positives = 71/222 (31%), Gaps = 22/222 (9%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQAL--PSEKVADPNAIDY--GTIL 67
+ LT+ V +G Y C N L S V L L P + P+ Y G L
Sbjct: 340 DNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNL 399
Query: 68 S-----SAFPSES------ASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSG 116
S ++ P + + T + + L C ++ S
Sbjct: 400 SLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKN--SGLYTCQANNSA---SGHSR 454
Query: 117 YLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH 176
+T +P + ++ ++ C+ + W+ +GQ +
Sbjct: 455 TTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSPRL 513
Query: 177 YRITESNRLHINQANATDSGEYRCVASNSYTSDE-NAVTIRV 217
+ L + D+ Y C NS +++ + VT+ V
Sbjct: 514 QLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDV 555
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 78.5 bits (193), Expect = 2e-15
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHIN 188
P I+ + G ++++ C P Q W+ +G ++ L I
Sbjct: 203 PDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQ---------ELFIP 253
Query: 189 QANATDSGEYRCVASNSYTSDENAVTIRVE 218
+SG Y C A NS T +
Sbjct: 254 NITVNNSGSYTCQAHNSDTGLNRTTVTTIT 283
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 75.0 bits (184), Expect = 2e-14
Identities = 34/226 (15%), Positives = 65/226 (28%), Gaps = 38/226 (16%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILS-SAFPSE 74
LT+ V +Y C+ N + S +V L V + L+ S E
Sbjct: 166 LTLFNVTRNDTASYKCETQNPVSARRSDSVILN------VLYGPDAPTISPLNTSYRSGE 219
Query: 75 SAS----------PVVT-----QTTTTTTEATSPHV-------YAALTHCVPWSNVCLFG 112
+ + + +T E P++ Y C N
Sbjct: 220 NLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNNSGSYT----CQA-HNSDTGL 274
Query: 113 ARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN 172
R+ T P + + +++ C+ + + W+ + Q +
Sbjct: 275 NRTTVTTITVYAEPPKPFITS--NNSNPVEDEDAVALTCEPEIQNTTYL-WWVNNQSLPV 331
Query: 173 DGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDE-NAVTIRV 217
++ L + D G Y C N + D + V + V
Sbjct: 332 SPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNV 377
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 7e-13
Identities = 11/92 (11%), Positives = 31/92 (33%), Gaps = 2/92 (2%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH 186
+P + ++ ++ C+ + W+ + Q + + L
Sbjct: 109 ELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRTLT 167
Query: 187 INQANATDSGEYRCVASNSYTSDE-NAVTIRV 217
+ D+ Y+C N ++ ++V + V
Sbjct: 168 LFNVTRNDTASYKCETQNPVSARRSDSVILNV 199
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 9e-10
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 20/99 (20%)
Query: 134 ITLETQVFGV--GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH--------------- 176
+T+E+ F V G ++ + + WYK +V N +
Sbjct: 2 LTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAY 61
Query: 177 ---YRITESNRLHINQANATDSGEYRCVASNSYTSDENA 212
I + L I D+G Y S +E A
Sbjct: 62 SGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEA 100
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 6e-19
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH 186
+ +GSD+ C G P P V W +DGQ + + L
Sbjct: 292 HAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQN--RIEVSGGELR 349
Query: 187 INQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
++ DSG Y+CVA N + + + + V+
Sbjct: 350 FSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 6e-18
Identities = 39/238 (16%), Positives = 72/238 (30%), Gaps = 36/238 (15%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQA--LPSEKVADPNAID----YGT 65
+++ V+ + G+Y C A N G VS +L+ L + + + +G
Sbjct: 60 AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGV 119
Query: 66 ILSSAFPSESASPVVT--QTTTTTTEATSPHVYAALT-----------------HCVPWS 106
+ + + P + + + T C +
Sbjct: 120 MFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFA-T 178
Query: 107 NVCLFGARSGYLKETQ------NGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQ 160
+ F +S + K +Q + P G +++ C G P+PQ
Sbjct: 179 SHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQ 238
Query: 161 VFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ W K ++ LHI + D G Y C A N D I +
Sbjct: 239 IKWRKLD----GSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 292
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 6e-13
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 3/94 (3%)
Query: 135 TLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQ--VIENDGVHYRITESNRLHINQAN 191
+ G + C YP W + I DG + + L+I +
Sbjct: 107 ERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTE 166
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
A+D G Y C A++ +V + + +
Sbjct: 167 ASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAE 200
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 7e-13
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 141 FGVGSDISIPCDVDGYPIPQVFWYKDGQVIE-NDGVHYRITESNRLHINQANATDSGEYR 199
+++ C P W +G ++ YR+ + + N A D+G Y+
Sbjct: 19 GSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQ 78
Query: 200 CVASNSY-TSDENAVTIRVEGI 220
CVA+N+ T ++R +
Sbjct: 79 CVATNARGTVVSREASLRFGFL 100
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 6e-19
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIENDGVHYRITESN---RLHINQAN 191
+ V G + C ++ Y QV WY + +EN Y IT + L++
Sbjct: 8 IMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSE-KYEITYEDGVAILYVKDIT 66
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRVEGI 220
D G YRC N Y D + + V+G+
Sbjct: 67 KLDDGTYRCKVVNDYGEDSSYAELFVKGV 95
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 88.1 bits (218), Expect = 6e-19
Identities = 46/258 (17%), Positives = 72/258 (27%), Gaps = 42/258 (16%)
Query: 3 QVRSENYELNKNMLTIKRVEPERL------GAYTCQAYNGLGRAVSWTVTLQAL----PS 52
V + L E Y C A N G +S V ++A+
Sbjct: 48 DVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYE 107
Query: 53 EKVADPNAIDYGTI-LSSAFPSESASPVVT-------QTTTTTTEATSPHVYAALT---- 100
V + I + + PS A V + +
Sbjct: 108 ADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELH 167
Query: 101 -------------HCV---PWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVG 144
C + A G L T+ P + + V
Sbjct: 168 IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVA 227
Query: 145 SDISIPCDVDGYPIPQVFWYKDGQVIEND---GVHYRITESNR-LHINQANATDSGEYRC 200
IS+ C G+P P WYK + ++ R+ + + L I A DSG+Y C
Sbjct: 228 HTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLC 287
Query: 201 VASNSYTSDENAVTIRVE 218
V +NS + + V
Sbjct: 288 VVNNSVGGESVETVLTVT 305
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 83.5 bits (206), Expect = 2e-17
Identities = 43/235 (18%), Positives = 72/235 (30%), Gaps = 46/235 (19%)
Query: 16 LTIKRVEPE-RLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAFPSE 74
L I+ V PE +Y C+ + L + T L + +P + + +
Sbjct: 166 LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLV---ITEPISSSAPRTPA--LVQK 220
Query: 75 SASPVVTQTTTTTTEAT---SPHVY-------AALTHCVPWSNVCLFGARSGYLKETQ-- 122
+V T + A +P V ++ + + +K+
Sbjct: 221 PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 280
Query: 123 -NGGY-------------------LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVF 162
+G Y P+ I TQ G C G PI V
Sbjct: 281 DSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS 340
Query: 163 WYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
W KDG+ I + + L I D G Y+C N S E + +++
Sbjct: 341 WMKDGKAIGHSE--------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 9e-12
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 10/96 (10%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYK-DGQVIENDGVHYRITESNRLHINQANATD- 194
F + I C G P+P++ W + DG + + +I+ +L A D
Sbjct: 12 NRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDY 71
Query: 195 -----SGEYRCVASNSY---TSDENAVTIRVEGIFI 222
+ Y C+A N + S + V V +
Sbjct: 72 RQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYE 107
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 6e-19
Identities = 34/241 (14%), Positives = 66/241 (27%), Gaps = 51/241 (21%)
Query: 16 LTIKRVEPE-RLGAYTCQAYNGLGRAV--SWTVTLQALPSEKVADPNAIDYGTILSSAFP 72
L V + Y+C A + TL+ L + VA+ + +
Sbjct: 173 LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTP----SFMYPQGT 228
Query: 73 SESASPVVTQTTTTTTEAT---SPHVYAALTHCVPW--------SNVCLFGARSGYL--- 118
+ S + A+ +P + W S+ F + L
Sbjct: 229 ASSQMVLRGMDLLLECIASGVPTPDIA--------WYKKGGDLPSDKAKFENFNKALRIT 280
Query: 119 --KETQNGGY-------------------LVPVKVNITLETQVFGVGSDISIPCDVDGYP 157
E +G Y + + G D + C +G P
Sbjct: 281 NVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNP 340
Query: 158 IPQVFWYKDGQVIENDGVHYRITESNR-LHINQANATDSGEYRCVASNSYTSDENAVTIR 216
P V W +G+ +++ + + + + Y+C SN + +
Sbjct: 341 KPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVS 400
Query: 217 V 217
V
Sbjct: 401 V 401
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 83.8 bits (207), Expect = 2e-17
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATD 194
T +Q+ G D+ + C G P P + WYK G + +D + L I + D
Sbjct: 228 TASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKA-LRITNVSEED 286
Query: 195 SGEYRCVASNSYTSDENAVTIRVE 218
SGEY C+ASN S + +++RV+
Sbjct: 287 SGEYFCLASNKMGSIRHTISVRVK 310
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 4e-13
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESNRLH 186
P+ L+ V G+ +++ C+ G P P +FW + L+
Sbjct: 115 SPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLY 174
Query: 187 INQANATDS-GEYRCVASNSYTSD---ENAVTIRV 217
+ D +Y C A +T +N T++V
Sbjct: 175 FSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKV 209
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 2e-12
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIE-NDGVHYRITESNR-LHINQANA- 192
+ + +I I C+ G P P W ++ + + + L I+ +
Sbjct: 24 AKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGG 83
Query: 193 ---TDSGEYRCVASNSY-TSDENAVTIRVEGI 220
GEY+C A N + T+ N + ++V
Sbjct: 84 RPEEYEGEYQCFARNKFGTALSNRIRLQVSKS 115
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 7e-19
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH-YRITESN---RLHINQA 190
L++ V GS + + G+P+P+V W++DGQVI + +I+ S+ +L I
Sbjct: 11 PLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAV 70
Query: 191 NATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
+SG Y A+N + + V+ P+
Sbjct: 71 TKANSGRYSLKATNGSGQATSTAELLVKAETAPPN 105
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 9e-19
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANA 192
L++ GS + + V G P P V +Y+DG I++ ++I++ L I +A
Sbjct: 110 LQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSL-DFQISQEGDLYSLLIAEAYP 168
Query: 193 TDSGEYRCVASNSYTSDENAVTIRVE 218
DSG Y A+NS + + V+
Sbjct: 169 EDSGTYSVNATNSVGRATSTAELLVQ 194
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 84.2 bits (208), Expect = 7e-19
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHI 187
P + + + +G ++++ C G P+P + W K + + + T L I
Sbjct: 112 YPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPST--AEISTSGAVLKI 169
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
D G Y C A N D++ I V+
Sbjct: 170 FNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 3e-12
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 5/97 (5%)
Query: 125 GYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIP--QVFWYKDGQ--VIENDGVHYRIT 180
GYL P E +V G + + CD + W + I D +
Sbjct: 5 GYLDPFPPEERPEVRVK-EGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQ 63
Query: 181 ESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ L+I A+D G Y C S+ +
Sbjct: 64 TNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIP 100
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 1e-18
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHIN 188
P V + +E+ + G + + C + + W +DG + RIT + +
Sbjct: 9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESN-RTRITGE-EVEVR 65
Query: 189 QANATDSGEYRCVASNSYTSDENAVTIRV 217
+ DSG Y CV S+ SD ++ V
Sbjct: 66 DSIPADSGLYACVTSSPSGSDTTYFSVNV 94
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 2e-04
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 6 SENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
S + + ++ P G Y C + G + ++
Sbjct: 52 SNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSD-TTYFSVN 93
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 1e-18
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN--- 183
P G+D+ + C++ G P QV W+KD + + + Y+I N
Sbjct: 190 KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGK-KYKIMSENFLT 248
Query: 184 RLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
+HI ++ D GEY+C ASN S +I ++
Sbjct: 249 SIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 2e-18
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 125 GYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN- 183
G + P ++ + +G + C V G ++ W KD + I G +Y++T
Sbjct: 1 GAMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGG-NYKMTLVEN 59
Query: 184 --RLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
L + + D+G+Y C ASN D + + V+
Sbjct: 60 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 96
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 3e-18
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT---ESNRLHINQANAT 193
+++ C + G P +V WYKD I+ +R++ L + +
Sbjct: 107 PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESS-KFRMSFVESVAVLEMYNLSVE 165
Query: 194 DSGEYRCVASNSYTSDENAVTIRVE 218
DSG+Y C A N+ S ++ +++V+
Sbjct: 166 DSGDYTCEAHNAAGSASSSTSLKVK 190
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 1e-18
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 1/93 (1%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH-YRITESNRL 185
+ + Q F G D + C V P P V W + + + + + +N L
Sbjct: 96 YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 155
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
I N +D G YRC + + I V
Sbjct: 156 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 188
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 5e-17
Identities = 19/82 (23%), Positives = 36/82 (43%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDS 195
G +++ C G P P + W+++G++IE + + + L + +D
Sbjct: 201 SFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDG 260
Query: 196 GEYRCVASNSYTSDENAVTIRV 217
G Y C A+N DE ++V
Sbjct: 261 GPYVCRATNKAGEDEKQAFLQV 282
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 9e-16
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN--- 183
+ ++V I+L VG C G P ++ G+ I + + +
Sbjct: 2 MALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQ-RVVVQKEGVRS 60
Query: 184 RLHINQANATDSGEYRCVASNSYTSDENA-VTIRVE 218
RL I AN D+G YRC A+++ + A V + +
Sbjct: 61 RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY 96
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 2e-18
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN----RLHINQANATDSGEY 198
G ++ C V G P P+++W+KDG+ I HY I LH + D G Y
Sbjct: 22 EGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNY 81
Query: 199 RCVASNSYTSDENAVTIRVEGIFIHPS 225
+A+N + V+ + PS
Sbjct: 82 TIMAANPQGRISCTGRLMVQAVNSGPS 108
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 2e-18
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQA 190
+ +E+ + G + + C + + W +DG + RIT + + +
Sbjct: 5 SSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESN-RTRITGE-EVEVQDS 61
Query: 191 NATDSGEYRCVASNSYTSDENAVTIRVE 218
DSG Y CV S+ SD ++ V
Sbjct: 62 VPADSGLYACVTSSPSGSDTTYFSVNVS 89
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 38.5 bits (90), Expect = 5e-04
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 6 SENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPS 52
S + + ++ P G Y C + G ++V +
Sbjct: 46 SNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 2e-18
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH 186
+ K+ G +PC G P P V W K + + + ES L
Sbjct: 98 KMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENS-RIAVLESGSLR 156
Query: 187 INQANATDSGEYRCVASNSYTSDE-NAVTIRVE 218
I+ D+G+YRCVA NS + V + VE
Sbjct: 157 IHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 2e-17
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 128 VPVKVNIT--LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES-NR 184
+P IT LET V + C V+ YP P++ W ++ +I+ Y I E+
Sbjct: 4 LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL 63
Query: 185 LHINQANATDSGEYRCVASNSY-TSDENAVTIRV 217
L I +D G Y C A+N + E+ ++V
Sbjct: 64 LTILSVEDSDDGIYCCTANNGVGGAVESCGALQV 97
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 16/38 (42%), Positives = 18/38 (47%)
Query: 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
L L I V+ E G Y C A N LG A S V L+
Sbjct: 150 LESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLE 187
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 5e-18
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQAN 191
E G + V G P P V WY +G+ +++D +H I L
Sbjct: 11 VPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVR 70
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRVEG 219
A+D+G Y CVA N V + V
Sbjct: 71 ASDAGAYACVAKNRAGEATFTVQLDVLA 98
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 5e-18
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYR 199
G + C V G P P + W DG+ + D H + N L I + D+G Y
Sbjct: 23 EGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYT 82
Query: 200 CVASNSYTSDENAVTIRVEG 219
C+A+N + ++ + V
Sbjct: 83 CIATNRAGQNSFSLELVVAA 102
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 5e-18
Identities = 30/217 (13%), Positives = 48/217 (22%), Gaps = 72/217 (33%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAF 71
N + L V + G Y C+ N S L V D
Sbjct: 63 NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLD------VCDI------------- 103
Query: 72 PSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVK 131
P Q + + + T +
Sbjct: 104 ------PESFQRSVDGVSESKLQICVEPTSQK------------------------LMPG 133
Query: 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQAN 191
+ L+ C G PIP W+K+ + ++ + +
Sbjct: 134 STLVLQ-------------CVAVGSPIPHYQWFKNELPLTHET-------KKLYMVPYVD 173
Query: 192 ATDSGEYRCVASNSY---TSDENAVTIRVEGIFIHPS 225
G Y C N S + + I HP
Sbjct: 174 LEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPD 210
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 3e-15
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 127 LVPVKVNITL--ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR 184
LVP IT+ E++ G + + C G+P Q W+K + I N ++
Sbjct: 14 LVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG-------NTSE 66
Query: 185 LHINQANATDSGEYRCVASNSYTSDE-NAVTIRV 217
L N + D+G Y C +N++T + + V
Sbjct: 67 LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDV 100
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 6e-18
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN--RL 185
VP ++ + +G + C V G ++ W KD + I G + N L
Sbjct: 196 VPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 255
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVEG--IFIHP 224
+ + D+G+Y C ASN D + + V+ FI
Sbjct: 256 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKK 296
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 9e-18
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 125 GYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR 184
+P L+ +G ++ C ++G QV WYKDG+++++D + + + +
Sbjct: 97 ERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDA-NLQTSFIHN 155
Query: 185 ---LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
L I Q + + G+Y C ASN + ++ + + + P
Sbjct: 156 VATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPF 199
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 6e-17
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR-- 184
P G+D+ + C++ G P QV W+KD + + + Y+I N
Sbjct: 382 KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGK-KYKIMSENFLT 440
Query: 185 -LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+HI ++ D GEY+C ASN SD +I ++
Sbjct: 441 SIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK 475
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 2e-16
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVI-ENDGVHYRITESNR-LH 186
P + +++ C + G P +V WYKD I E+ ES L
Sbjct: 291 PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLE 350
Query: 187 INQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ + DSG+Y C A N+ S ++ +++V+
Sbjct: 351 MYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK 382
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 81.4 bits (201), Expect = 2e-16
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RL 185
P LE +G I++ C VDG P ++ WYK+ + + Y++ N L
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAP-AYKMQFKNNVASL 63
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLP 230
IN+ + +D GEY C A NS + ++ + ++ + PS
Sbjct: 64 VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKL 108
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 9e-16
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR-- 184
P + L VG ++ + ++G V W+KD I + + I+ S
Sbjct: 475 KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIA 534
Query: 185 -LHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
L ++A ++G+Y C N + E T+ V
Sbjct: 535 TLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 1e-17
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN-----RLHINQAN 191
G+ ++I C+V YP + W++DGQ++ + + I N L + +
Sbjct: 26 VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSN-YSNIKIYNTPSASYLEVTPDS 84
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRV 217
D G Y C A N + +
Sbjct: 85 ENDFGNYNCTAVNRIGQESLEFILVQ 110
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 1e-17
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN----RLHINQAN 191
L S+ ++ C V G+P P V WY+ G+ I DG+ YRI E +L I
Sbjct: 11 LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVT 70
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRVE 218
D+ Y+ A+N S ++ VE
Sbjct: 71 DDDATVYQVRATNQGGSVSGTASLEVE 97
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 4e-17
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR----LHINQAN 191
+ G +SI G P P + W K +I+N+G HY++ + + N
Sbjct: 111 MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG-HYQVIVTRSFTSLVFPNGVE 169
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRVEG 219
D+G Y A N + D+ V + V
Sbjct: 170 RKDAGFYVVCAKNRFGIDQKTVELDVAD 197
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 1e-17
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 3/87 (3%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQA 190
+ + + C G P+P + W K+G+ + + N L +
Sbjct: 13 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 72
Query: 191 NATDSGEYRCVASNSYTSDENAVTIRV 217
+D G Y CV N Y S + + V
Sbjct: 73 VPSDKGNYTCVVENEYGSINHTYHLDV 99
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 1e-17
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH 186
L V++ + E G +++ C+V P PQ+ W KDG + + S L
Sbjct: 8 LEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLP-------LPPSPVLI 60
Query: 187 INQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + D G Y CVA++S + + + +
Sbjct: 61 LPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 1e-17
Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH--- 186
E VGS + + G P+P + W+ ++++N + I +
Sbjct: 104 HPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSE-NITIENTEHYTHLV 162
Query: 187 -INQANATDSGEYRCVASNSYTSDENAVTIRVE 218
N T +G+Y+ SN + + + + + ++
Sbjct: 163 MKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 5e-17
Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR---LHINQAN 191
++ +G + C + G P+P + WY+ G+ + Y+++ R L +
Sbjct: 13 EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSR-KYKMSSDGRTHTLTVMTEE 71
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRVE 218
D G Y C+A+N E + + ++
Sbjct: 72 QEDEGVYTCIATNEVGEVETSSKLLLQ 98
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 84.0 bits (207), Expect = 2e-17
Identities = 37/242 (15%), Positives = 68/242 (28%), Gaps = 27/242 (11%)
Query: 5 RSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNAIDY 63
+ + I ++ + G Y + + +TV+++ + P
Sbjct: 94 HFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKM 153
Query: 64 GTILSSAFPSESAS---PVVT--------QTTTTTTEATSPHVYAALTHCVPWSNVCLFG 112
A S S P+V ++ + A L C
Sbjct: 154 EN--QDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCC-- 209
Query: 113 ARSGYLKETQNGGYL-VPVKVNITLETQVFGVGSDISIPCD-VDGYPIPQVFWYKDGQVI 170
AR+ +E + + TL VG + I C V + W + + +
Sbjct: 210 ARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKAL 269
Query: 171 ENDGVHYRITESNR--------LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFI 222
E T S ++ D+G Y C +S + VTI +G
Sbjct: 270 EEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL-VTIVEKGFIN 328
Query: 223 HP 224
Sbjct: 329 AT 330
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 78.2 bits (192), Expect = 1e-15
Identities = 12/90 (13%), Positives = 24/90 (26%), Gaps = 1/90 (1%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ-VIENDGVHYRITESNRLHINQ 189
V + I++ VD W + + + I +
Sbjct: 50 GTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILK 109
Query: 190 ANATDSGEYRCVASNSYTSDENAVTIRVEG 219
T +GEY + T+ T+ +
Sbjct: 110 MTETQAGEYLLFIQSEATNYTILFTVSIRN 139
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 2e-15
Identities = 26/230 (11%), Positives = 58/230 (25%), Gaps = 27/230 (11%)
Query: 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAVS--WTVTLQALPSEKVADPNAIDYGTI-L 67
+ K + + C A N LGR + +T+ L P + + +
Sbjct: 191 VKKEEKVLHELFGTD---IRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWI 247
Query: 68 SSAFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGY- 126
+ +T + + T+ + + + A + G Y
Sbjct: 248 RCKAVHVNHGFGLTWELENK-ALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYT 306
Query: 127 ---------------LVPVKVNITLETQVF--GVGSDISIPCDVDGYPIPQVFWYKDGQV 169
+ +N T ++ + + YP + W +
Sbjct: 307 CSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKS 366
Query: 170 IENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
+ + + + GEY A N T+ +
Sbjct: 367 FPCE--QKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRS 414
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 2e-17
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHIN 188
+++ + +Q GS + + C G PIP W+K+ + ++ +
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-------TKKLYMVP 55
Query: 189 QANATDSGEYRCVASNSYTSDE-NAVTIRVE 218
+ G Y C N S + V I ++
Sbjct: 56 YVDLEHQGTYWCHVYNDRDSQDSKKVEIIID 86
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-05
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPN 59
K + + V+ E G Y C YN S V + + + N
Sbjct: 48 TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII------IDELN 89
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 3e-17
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR-----LHINQA 190
+ +V ++ C G P P++ W+KD ++ + RI + L I Q+
Sbjct: 115 PQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQS 174
Query: 191 NATDSGEYRCVASNSYTSDENA-VTIRVEG 219
+D G+Y CVA+NS + +A + V G
Sbjct: 175 EESDQGKYECVATNSAGTRYSAPANLYVRG 204
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 3e-16
Identities = 23/102 (22%), Positives = 32/102 (31%), Gaps = 6/102 (5%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHI----NQA 190
T Q G S C G P P++ W K G+ + N + +
Sbjct: 12 TPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLR 71
Query: 191 NATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLF 232
D Y CVASN+ + + V P R P
Sbjct: 72 TPRDEAIYECVASNNVGEISVSTRLTVLREDQIP--RGFPTI 111
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 4e-17
Identities = 16/98 (16%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIENDGVHYRITESNRLHI 187
+ + + ++VF G +++ C + V +Y++G+ + ++ L I
Sbjct: 82 RGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF------HWNSNLTI 135
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
+ N + +G Y C + +++ V+ +F P
Sbjct: 136 LKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPV 173
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 9e-12
Identities = 32/225 (14%), Positives = 60/225 (26%), Gaps = 33/225 (14%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYG--TILSSAFPS 73
I G Y CQ GR+ + + G L
Sbjct: 50 YRITSASVNDSGEYRCQRGLS-GRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWK 108
Query: 74 ESASPVVT--------QTTTTTTEATSPHVYAALT---HCVPWSNVCLFGARSGYLKETQ 122
+ V + + T + HC S + T
Sbjct: 109 DKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKH---RYTSAGISVTV 165
Query: 123 NGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIP-----QVFWYKDGQVIENDGVHY 177
+ PV +N ++ + + G+ +++ C+ +Y + +
Sbjct: 166 KELFPAPV-LNASVTSPLL-EGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRN--- 220
Query: 178 RITESNRLHINQANATDSGEYRCVASN---SYTSDENAVTIRVEG 219
S+ I A DSG Y C A+ + + ++V G
Sbjct: 221 ---TSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 2e-11
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 13/96 (13%)
Query: 134 ITLE---TQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIENDGVHYRITESNRLHINQ 189
ITL+ VF +++ C+V P W+ +G + T + I
Sbjct: 4 ITLQPPWVSVF-QEETVTLHCEVLHLPGSSSTQWFLNGTATQ--------TSTPSYRITS 54
Query: 190 ANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
A+ DSGEYRC S SD + I + + S
Sbjct: 55 ASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVS 90
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 4e-17
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 8/128 (6%)
Query: 97 AALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGY 156
++ T + N +L+E V T+ GS C V+GY
Sbjct: 12 SSPTSPI---NANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGY 68
Query: 157 PIPQVFWYKDGQVIENDGVHYRITESN----RLHINQANATDSGEYRCVASNSYTSDENA 212
P P+V W+KD ++ H++I L I++ D +Y C A NS
Sbjct: 69 PDPEVMWFKDDNPVKESR-HFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCT 127
Query: 213 VTIRVEGI 220
+ VE +
Sbjct: 128 AELLVETM 135
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 80.8 bits (199), Expect = 4e-17
Identities = 34/249 (13%), Positives = 65/249 (26%), Gaps = 30/249 (12%)
Query: 3 QVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSW-TVTLQALPSEKVADPNAI 61
+ + E + LT + + G Y C + + ++ +
Sbjct: 40 PYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEV 99
Query: 62 DYG----TILSSAFPSESASPVVTQTTTTTTEATSPHVYAALTH---------------- 101
+L + V+ + VY
Sbjct: 100 TVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTY 159
Query: 102 -CVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQ 160
C N + S + N + P ++ + V G I C +
Sbjct: 160 VCKTMVNGR--ESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGF 217
Query: 161 VFWYKDGQVIENDGVHYRITESNR-----LHINQANATDSGEYRCVASNSYTSDENAVTI 215
K G ++ ++ L +N + D+G Y CVASN + +
Sbjct: 218 NVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNF 277
Query: 216 RV-EGIFIH 223
+V E H
Sbjct: 278 QVVESHHHH 286
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 69.6 bits (170), Expect = 3e-13
Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 2/98 (2%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPI-PQVFWYKDGQVIENDGVHYRITESNRLHI 187
N+ + G + +PC + + V ++G Y + I
Sbjct: 89 AHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFII 148
Query: 188 NQANATDSGEYRCVASNS-YTSDENAVTIRVEGIFIHP 224
+A DS Y C + S + ++V + P
Sbjct: 149 RKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEP 186
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 3e-10
Identities = 13/100 (13%), Positives = 29/100 (29%), Gaps = 10/100 (10%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHIN 188
+ + V G +++ C +G V W + + L
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPE---SPGSTLTTR 56
Query: 189 QANATDSGEYRCVASNSYTSDENAVTIRVEG---IFIHPS 225
A ++G YRC + + + V+ + +
Sbjct: 57 NATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLA 96
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 80.9 bits (199), Expect = 4e-17
Identities = 43/247 (17%), Positives = 71/247 (28%), Gaps = 49/247 (19%)
Query: 14 NMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAFPS 73
++LT+ + G Y C + G L V DP P+
Sbjct: 51 SVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYI----FVPDPT--------VGFLPN 98
Query: 74 ESASPVVTQTTTTTT----EATSPHVYAALTHCVPWSNV-CLFGARSGYLKETQNGGYL- 127
++ + T T T P + L + + + G+ ++ Y+
Sbjct: 99 DAEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYIC 158
Query: 128 ---------------------VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD 166
+ V++ V G +I++ C V G + W
Sbjct: 159 KTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYP 218
Query: 167 GQVIENDGVHY-------RITESNRLHINQANATDSGEYRCVASNSY--TSDENAVTIRV 217
+ + LHI A DSG Y C + S DE A+ I V
Sbjct: 219 RKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278
Query: 218 -EGIFIH 223
E H
Sbjct: 279 VESGHHH 285
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 3e-08
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 11/93 (11%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE-SNRL 185
+ P + L V S + C V W + Q + + S+ L
Sbjct: 3 VTPPGPELVLN-----VSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVL 53
Query: 186 HINQANATDSGEYRCVASNSYTSD-ENAVTIRV 217
+ D+GEY C ++S + + + +
Sbjct: 54 TLTNLTGLDTGEYFCTHNDSRGLETDERKRLYI 86
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 6e-17
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESNR- 184
LVP +G+ + C DG P + W+KDG V+ + R ++
Sbjct: 105 LVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY 164
Query: 185 --------LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGI 220
L + +A+D+GEY C A N Y + + +R+E +
Sbjct: 165 VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 208
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 3e-13
Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 10/100 (10%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN----------DGVHYR 178
V V+ + + + + C G+ P+V W D
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 179 ITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ D+G Y C+ S + V +++
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 7e-17
Identities = 30/218 (13%), Positives = 60/218 (27%), Gaps = 62/218 (28%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAI 61
+ + + + +++++ E G YT Q +G S TV L +K+
Sbjct: 52 MHIDRNTGIIE---MFMEKLQDEDEGTYTFQLQDGKATNHS-TVVLVGDVFKKLQKEAEF 107
Query: 62 DYGTILSSAFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKET 121
P + +
Sbjct: 108 ------QRQEWIRKQGPHFVEYLSWE---------------------------------- 127
Query: 122 QNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE 181
V + N+ L+ +V + + WYKD + I D H
Sbjct: 128 ------VTGECNVLLKCKVANI------------KKETHIVWYKDEREISVDEKHDFKDG 169
Query: 182 SNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
L I + + D+G Y + + D++ + + E
Sbjct: 170 ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 207
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 4e-13
Identities = 7/73 (9%), Positives = 22/73 (30%), Gaps = 6/73 (8%)
Query: 151 CDVDGYPIPQVFWYKDGQVIENDGVHYRITESN-----RLHINQANATDSGEYRCVASNS 205
+V + + + I Y++ + + + D G Y +
Sbjct: 25 QAEKLSGNAKVNYIFNEKEIFEGP-KYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDG 83
Query: 206 YTSDENAVTIRVE 218
++ + V + +
Sbjct: 84 KATNHSTVVLVGD 96
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 7e-17
Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 3/100 (3%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYR 199
+ + C G P+P + W K+G+ + + N L + +D G Y
Sbjct: 33 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92
Query: 200 CVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIV 239
CV N Y S + + V H L AN +V
Sbjct: 93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVV 132
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 7e-13
Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 13/103 (12%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQV----IENDGVHY------ 177
P+ VG D+ C V P + W K + DG+ Y
Sbjct: 117 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKH 176
Query: 178 ---RITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + L + D+GEY C SN + + V
Sbjct: 177 SGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 82.0 bits (202), Expect = 1e-16
Identities = 38/242 (15%), Positives = 72/242 (29%), Gaps = 28/242 (11%)
Query: 3 QVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTV----TLQALPSE----- 53
++ E E +N ++ E G YTC +GL ++ V L +
Sbjct: 69 EILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKE 128
Query: 54 --------KVADPNAIDYGTILSSAFPSESASPVVTQTTTTTTEATSPHVYAALT-HCVP 104
+ DP +Y P + + Y L HC
Sbjct: 129 DNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSV 188
Query: 105 WSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIP-QVFW 163
+ LK V+++ + + G + ++ C + W
Sbjct: 189 DQEGKSVLSEKFILKVRPAFK--AVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTW 246
Query: 164 YKDGQVIENDGVHYRITESNR-------LHINQANATDSGEYRCVASNSYTSDENAVTIR 216
++ + + + L I+ A DSG + C A+N++ S T+
Sbjct: 247 KRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLE 306
Query: 217 VE 218
V
Sbjct: 307 VV 308
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 3e-14
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 143 VGSDISIPCDVDGYPIPQ-VFWYKDGQVIENDGVHYRITESNR-------LHINQANATD 194
G ++ + + + +P P+ W + + Y +E+ LH+ + T+
Sbjct: 327 DGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTE 386
Query: 195 SGEYRCVASNSYTSDENAVTIRVE 218
G Y + SNS + A + V
Sbjct: 387 GGTYTFLVSNSDVNAAIAFNVYVN 410
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 72.4 bits (177), Expect = 1e-13
Identities = 41/249 (16%), Positives = 60/249 (24%), Gaps = 45/249 (18%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNAIDYGTIL------- 67
LTI G + C A N G A V+ T+ + +
Sbjct: 275 LTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLI 334
Query: 68 --SSAFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGG 125
AFP T + L R LK T+ G
Sbjct: 335 VEYEAFPKPEH--QQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTR---LKGTEGGT 389
Query: 126 YL-------------VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN 172
Y V VN E + + + C G+P P + WY +
Sbjct: 390 YTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQR 449
Query: 173 DGVHYRITESN--------------RLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ + I+ + +G C A N +
Sbjct: 450 CSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFK 509
Query: 219 G---IFIHP 224
G IHP
Sbjct: 510 GNNKEQIHP 518
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 62.4 bits (151), Expect = 2e-10
Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 16/121 (13%)
Query: 108 VCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG 167
+ L ++G + + + G P ++ + VG +I + C G V W +
Sbjct: 15 LLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEI 70
Query: 168 QVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG---IFIHP 224
N+ + N +A AT++G+Y C + ++ ++ + V +F+
Sbjct: 71 LDETNEN------KQNEWITEKAEATNTGKYTCTNKHGLSN---SIYVFVRDPAKLFLVD 121
Query: 225 S 225
Sbjct: 122 R 122
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 2e-08
Identities = 10/99 (10%), Positives = 23/99 (23%), Gaps = 2/99 (2%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHI 187
P K+ + + +D + C + + + + + I
Sbjct: 113 DPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMI 172
Query: 188 -NQANATDSGEYRCVASNSYTSDE-NAVTIRVEGIFIHP 224
+ A C S ++V F
Sbjct: 173 KSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAV 211
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 1e-16
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVI-ENDGVHYRITESNR-----LHINQANATDSG 196
+ + I V G P P + W +GQ + E+ +H + L N+ ++G
Sbjct: 19 LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNG 78
Query: 197 EYRCVASNSYTSDENAVTIRV 217
Y +A N + +
Sbjct: 79 NYTLIAKNPLGTANQTINGHF 99
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 2e-16
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 3/100 (3%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR---LHINQANATDSGEYR 199
+ + C G P P + W K+G+ + I ++ L + +D G Y
Sbjct: 29 AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT 88
Query: 200 CVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIV 239
CV N + S T+ V H L AN ++
Sbjct: 89 CVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL 128
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 2e-13
Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 14/106 (13%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYK----DGQVIENDGVHYR----- 178
P+ Q +GSD+ C V P + W K +G + DG Y
Sbjct: 113 RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKS 172
Query: 179 -----ITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
+ RL + + D GEY C A+N E A + V G
Sbjct: 173 WISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHG 218
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 2e-16
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT--ESNRLHINQAN 191
+ + +V ++ C G P P++ W+KD ++ + RI S L I +
Sbjct: 113 MGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSE 172
Query: 192 ATDSGEYRCVASNSYTSDENA-VTIRVEGIFIHPS 225
TD G+Y CVA+NS ++ + V + P
Sbjct: 173 ETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPR 207
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 3e-15
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHI 187
V + +I + G +++I C G P+P V W + + + + + R +
Sbjct: 204 VAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPED-DMPV---GRNVL 259
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
+ DS Y CVA +S E I V+
Sbjct: 260 ELTDVKDSANYTCVAMSSLGVIEAVAQITVKS 291
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 3e-14
Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 4/96 (4%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR-- 184
P + + Q+ G S C G P P+V W K G+ + + + +
Sbjct: 4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63
Query: 185 -LHINQANAT-DSGEYRCVASNSYTSDENAVTIRVE 218
L I D Y CVA NS + V
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVL 99
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 74.6 bits (183), Expect = 3e-16
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 146 DISIPCDVDGYPIPQVFWYKDGQVI-ENDGVHYRITESNR--------LHINQANATDSG 196
IP VDG P P + W +G V+ E + E L +NQ ++G
Sbjct: 17 HWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 76
Query: 197 EYRCVASNSYTSDENAVTIRV 217
Y +A+N + ++
Sbjct: 77 NYTLLAANPFGQASASIMAAF 97
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 3e-16
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 15/102 (14%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH---------------YR 178
+Q VG + + C+ G P+P++ W+ +GQ + Y
Sbjct: 26 QAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYH 85
Query: 179 ITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGI 220
++ + I+ D+G Y C ASN + RV+ +
Sbjct: 86 QHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWV 127
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 3e-16
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDS 195
T+V VG + + C G P P ++W K+ ++ Y + L I + D
Sbjct: 117 PGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY-SLKDGFLQIENSREEDQ 175
Query: 196 GEYRCVASNSY---TSDENAVTIRVEGIFIHP 224
G+Y CVA NS S + ++V +
Sbjct: 176 GKYECVAENSMGTEHSKATNLYVKVRRVGTKH 207
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 70.6 bits (173), Expect = 5e-14
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN-RLHINQANAT 193
+ Q VG S C G P P + W K+G+ + Y + E + I +
Sbjct: 12 KPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPV 71
Query: 194 ----DSGEYRCVASNSY-TSDENAVTIRV 217
D Y CVA N + T+ +
Sbjct: 72 RAGRDDAPYECVAENGVGDAVSADATLTI 100
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 13/47 (27%), Positives = 18/47 (38%)
Query: 1 MIQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47
+ + + Y L L I+ E G Y C A N +G S L
Sbjct: 150 KVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNL 196
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 4e-16
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RL 185
P + LE Q G D+ + C++ P V W KD + I Y + L
Sbjct: 8 PAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQ-KYDVVCEGTMAML 65
Query: 186 HINQANATDSGEYRCVASNSYTS 208
I A+ D+GEY C S ++
Sbjct: 66 VIRGASLKDAGEYTCEVEASKST 88
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 5e-16
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG-VHYRITESNR- 184
K G+ I+I CDV P + W +D V+ + + + R
Sbjct: 98 EYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK 157
Query: 185 --LHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
L I + D G Y C A+N + + +
Sbjct: 158 MILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALAD 194
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 2e-14
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV------HYRITESNR--- 184
I L+ + +++ CD +G PIP++ W + + +
Sbjct: 5 IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 64
Query: 185 LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
LHI +DSG Y C A++ + ++ + +E
Sbjct: 65 LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 6e-16
Identities = 29/204 (14%), Positives = 54/204 (26%), Gaps = 59/204 (28%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAFPSES 75
+ +++++ E G YT Q +G S TV L +
Sbjct: 168 MFMEKLQDEDEGTYTFQLQDGKATNHS-TVVL------VGDVFKKLQKEAEFQRQEWIRK 220
Query: 76 ASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNIT 135
P + + V + N+
Sbjct: 221 QGPHFVEYLSWE----------------------------------------VTGECNVL 240
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDS 195
L+ +V + WYKD + I D H L I + + D+
Sbjct: 241 LKCKVAN------------IKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDA 288
Query: 196 GEYRCVASNSYTSDENAVTIRVEG 219
G Y + + D++ + + E
Sbjct: 289 GIYEVILKDDRGKDKSRLKLVDEA 312
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 73.9 bits (181), Expect = 1e-14
Identities = 11/96 (11%), Positives = 28/96 (29%), Gaps = 6/96 (6%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---- 183
V V L ++ G +V + + + I Y++
Sbjct: 107 PTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGP-KYKMHIDRNTGI 165
Query: 184 -RLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ + + D G Y + ++ + V + +
Sbjct: 166 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGD 201
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 71.2 bits (174), Expect = 1e-13
Identities = 12/94 (12%), Positives = 26/94 (27%), Gaps = 5/94 (5%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---R 184
+ + ++ CD P + W KD E+ + +
Sbjct: 2 IDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSP-RLEVESKGNKTK 59
Query: 185 LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ D G Y C +++ + + E
Sbjct: 60 MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEE 93
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 9e-16
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDS 195
L+ G D + C V G P+P++ W +GQ I+ LHI A D
Sbjct: 18 LKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC-EAGVAELHIQDALPEDH 76
Query: 196 GEYRCVASNSYTSDENAVTIRV 217
G Y C+A N+ + + V
Sbjct: 77 GTYTCLAENALGQVSCSAWVTV 98
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 76.6 bits (188), Expect = 9e-16
Identities = 38/232 (16%), Positives = 60/232 (25%), Gaps = 34/232 (14%)
Query: 4 VRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNAI- 61
V N + E E TC G TVT+ + P+ V
Sbjct: 51 VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEV 110
Query: 62 ---DYGTILSSAFP---------SESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVC 109
T+ A P Q T + ++ C V
Sbjct: 111 SEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFS----CSATLEV- 165
Query: 110 LFGARSGYLKETQNGGYLVP--VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG 167
+ + +T+ L + + S + C G P+P++ KDG
Sbjct: 166 --AGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDG 223
Query: 168 QVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
G +T G Y C A ++ VT+ V
Sbjct: 224 TFPLPIGESVTVTRD-----------LEGTYLCRARSTQGEVTREVTVNVLS 264
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 76.9 bits (189), Expect = 9e-16
Identities = 33/250 (13%), Positives = 61/250 (24%), Gaps = 32/250 (12%)
Query: 5 RSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSW---TVTLQALPSEKVADPNAI 61
+ + + ++L+ + G Y C + V A P +A +
Sbjct: 42 WTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVV 101
Query: 62 DYG--TILSSAFPSESASPVVTQTTTTTTEATSPHVYAALTH-----------------C 102
+L V+ Y+ C
Sbjct: 102 FEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQC 161
Query: 103 VPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVF 162
+ S LK + P + + V G I C +
Sbjct: 162 SALMGGRKVMSISIRLKVQKVIPG--PPALTLVPAELVRIRGEAAQIVCSASSVDVNFDV 219
Query: 163 WYKDGQVIENDGVHYRITESNR-----LHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + + L+++Q + +G Y CVASN ++ RV
Sbjct: 220 FLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRV 279
Query: 218 E---GIFIHP 224
G H
Sbjct: 280 VESAGNSHHH 289
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 6e-09
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 7/88 (7%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQA 190
+ ++ V G+ +++ C +G V W Y S+ L N A
Sbjct: 6 VIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSP---HWTLYSDGSSSILSTNNA 58
Query: 191 NATDSGEYRCVASNSYTSDENAVTIRVE 218
++G YRC A+ + V+
Sbjct: 59 TFQNTGTYRCTEPGDPLGGSAAIHLYVK 86
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 9e-16
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR---- 184
+K+ G + + C V+G P + W KDG V++N Y
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 185 LHINQANATDSGEYRCVASNSY-TSDENAVTIRVEG 219
L + +D+G Y C + T V + VEG
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG 97
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 1e-13
Identities = 13/93 (13%), Positives = 28/93 (30%), Gaps = 9/93 (9%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIENDGVHYRITESNRLH 186
+ + + + C+ G P P + W++ I +
Sbjct: 97 GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP-------APSPSV 149
Query: 187 INQANATDSGEYRCVASNSY-TSDENAVTIRVE 218
+N T S + C A N + T+ ++
Sbjct: 150 LNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
L++K VE G Y CQ +G +S V L
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLT 94
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 1e-15
Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 6/110 (5%)
Query: 129 PVKVNITLETQVFGVGSDISIPC-----DVDGYPIPQVFWYKDGQVIENDGVHY-RITES 182
+ Q+ + + + C ++ WYKD +++ D + + +
Sbjct: 120 DAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGT 179
Query: 183 NRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLF 232
L ++ D+G YRCV + ++ + +T +E +P+
Sbjct: 180 THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVI 229
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 70.1 bits (171), Expect = 3e-13
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 9/92 (9%)
Query: 136 LETQVFGVGSDISIPC-------DVDGYPIPQVFWYKDGQVIE--NDGVHYRITESNRLH 186
+ + G +++ C P + W+K+ + + L
Sbjct: 25 YKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALW 84
Query: 187 INQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ A DSG Y C N+ D+ ++ +RV
Sbjct: 85 LLPALQEDSGTYVCTTRNASYCDKMSIELRVF 116
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 6e-13
Identities = 43/268 (16%), Positives = 77/268 (28%), Gaps = 59/268 (22%)
Query: 5 RSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPS---EKVADPNA 60
L + E G Y C N +S + + ++ P
Sbjct: 72 EETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQI 131
Query: 61 IDYGTILS------SAFPSESASPVVT--------------------QTTTTTTEATSPH 94
+ T S F + + T +
Sbjct: 132 LTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALED 191
Query: 95 --VY---AALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISI 149
Y H N+ RS L+ + +PV ++ L+T +GS ++I
Sbjct: 192 AGYYRCVLTFAHEGQQYNI----TRSIELRIKKKKEETIPVIIS-PLKTISASLGSRLTI 246
Query: 150 PCDV---DGYPIPQVFWYK-DGQVIENDGVHYRITESNR--------------LHINQAN 191
PC V G P+ + W+ + IE+ R+TE R L +
Sbjct: 247 PCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVT 306
Query: 192 ATDSG-EYRCVASNSYTSDENAVTIRVE 218
D +++CV N+ + T++
Sbjct: 307 REDLHMDFKCVVHNTLSFQTLRTTVKEH 334
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 79.0 bits (194), Expect = 1e-15
Identities = 30/251 (11%), Positives = 63/251 (25%), Gaps = 39/251 (15%)
Query: 3 QVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNAI 61
Q + + I ++ + G Y + + +TV+++ + P
Sbjct: 92 QPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFR 151
Query: 62 DYGTILSSAFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKET 121
E+ +V + + + + + + L E
Sbjct: 152 ----------KMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHEL 201
Query: 122 QNGGY------------------LVPVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVF 162
+ TL VG + I C +
Sbjct: 202 FGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLT 261
Query: 163 WYKDGQVIENDGVHYRITESNR--------LHINQANATDSGEYRCVASNSYTSDENAVT 214
W + + +E T S ++ D+G Y C +S + VT
Sbjct: 262 WELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL-VT 320
Query: 215 IRVEGIFIHPS 225
I +G +
Sbjct: 321 IVEKGFINATN 331
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 78.6 bits (193), Expect = 1e-15
Identities = 10/88 (11%), Positives = 21/88 (23%), Gaps = 2/88 (2%)
Query: 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQ 189
+ + E + YP + W + + + +
Sbjct: 327 INATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE--QKGLDNGYSISKFC 384
Query: 190 ANATDSGEYRCVASNSYTSDENAVTIRV 217
+ GEY A N T+ +
Sbjct: 385 NHKHQPGEYIFHAENDDAQFTKMFTLNI 412
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 75.1 bits (184), Expect = 2e-14
Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 4/99 (4%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ-VIENDGVHYRITESNRLHINQ 189
V + I++ VD W + + + I +
Sbjct: 50 GTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILK 109
Query: 190 ANATDSGEYRCVASNSYTSDENAVTIRVEG---IFIHPS 225
T +GEY + T+ T+ + +
Sbjct: 110 MTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRP 148
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 71.7 bits (175), Expect = 2e-13
Identities = 39/246 (15%), Positives = 70/246 (28%), Gaps = 39/246 (15%)
Query: 1 MIQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTV----TLQALPSEKVA 56
M + + + V G YTC + ++ T+ + A S +
Sbjct: 277 MSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDY 336
Query: 57 DPNAIDYGTI--LSSAFPSESASPVVT----QTTTTTTEATSPHVYAALTHCVPWSN--- 107
+ + + A+P T + + + + Y+ C
Sbjct: 337 EIDQYEEFCFSVRFKAYPQ----IRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGE 392
Query: 108 -VCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD 166
+ A + + T+ +NI + QV S C DGYP+P W K
Sbjct: 393 YIFH--AENDDAQFTKM------FTLNIRRKPQVLAEASASQASCFSDGYPLPSWTWKKC 444
Query: 167 GQVIENDGVHYRITESNR-------------LHINQANATDSGEYRCVASNSYTSDENAV 213
N NR +N + A +C A NS + +
Sbjct: 445 SDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETI 504
Query: 214 TIRVEG 219
+ G
Sbjct: 505 LLNSPG 510
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 2e-15
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 136 LETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATD 194
+ VG + C G+P P + W KDG +++ +L I +D
Sbjct: 118 PSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERI-TIRGGKLMITYTRKSD 176
Query: 195 SGEYRCVASNSYTSDENAV 213
+G+Y CV +N E+ V
Sbjct: 177 AGKYVCVGTNMVGERESEV 195
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 70.6 bits (173), Expect = 4e-14
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV----HYRITESNRLHI-- 187
+ G ++ C +G P P + WYK G+ +E D H + S L
Sbjct: 14 EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLR 73
Query: 188 ---NQANATDSGEYRCVASNSY-TSDENAVTIRVEGI 220
+ + D G Y CVA N + + ++ V +
Sbjct: 74 IVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL 110
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 76.3 bits (187), Expect = 2e-15
Identities = 36/232 (15%), Positives = 73/232 (31%), Gaps = 40/232 (17%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ--------ALPSEKV------------ 55
L + + E G YTC + S + L+ A +
Sbjct: 81 LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCV 140
Query: 56 ---ADPNAI-----DYGTILSSAFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSN 107
P A D G + +++ S VT T+ +S +T C
Sbjct: 141 STGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVT-CKVEHE 199
Query: 108 VCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGV-GSDISIPCDVDGYPIP-QVFWYK 165
+ T N P +V+I+ + + ++ ++ CD P P W
Sbjct: 200 -----SFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWST 254
Query: 166 DGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + + + +L I + + C +N+ + + +T++V
Sbjct: 255 TMGPLPP----FAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 3e-10
Identities = 12/98 (12%), Positives = 28/98 (28%), Gaps = 6/98 (6%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHY-----RIT 180
L + ++ C G P Q+ W+ D + N +T
Sbjct: 115 LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVT 174
Query: 181 ESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
++ + ++ D C + +T+ +
Sbjct: 175 VTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLT 212
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 8e-07
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 26/101 (25%)
Query: 143 VGSDISIPCDVDGYPIP-----QVFWYKDGQVIENDGVHYR----ITESNR--------- 184
+G +++PC + + Q+ W + G+ H +ES R
Sbjct: 14 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG 73
Query: 185 -------LHINQANATDSGEYRC-VASNSYTSDENAVTIRV 217
L + D G Y C + S + +RV
Sbjct: 74 AELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 2e-15
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV----HYRITES 182
+ ++ G D + C GYP P+ W K + + + I
Sbjct: 90 KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINK 149
Query: 183 NR---LHI-NQANATDSGEYRCVASNSYTSDENAVTIRV 217
L+I N D GEY C A+NS S + +RV
Sbjct: 150 ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 5e-15
Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQV--FWYKDGQVIENDGVHYRITESNRL 185
++ + E + +++ C++ + +W K+G + + +
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR---KNASNMEY 58
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
IN+ A DSGEY CV + ++ + TI V+
Sbjct: 59 RINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA 91
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 76.3 bits (187), Expect = 2e-15
Identities = 39/264 (14%), Positives = 70/264 (26%), Gaps = 55/264 (20%)
Query: 5 RSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNAIDY 63
++ +K L + E G Y C N + + + AI
Sbjct: 53 QASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFK 112
Query: 64 GTILSSA------------------------------FPSESASPVVTQTTTTTTEATSP 93
+ + ++ +
Sbjct: 113 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEK 172
Query: 94 H--VY---AALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDIS 148
H Y A+ T+ + R + PV V+ ET +GS I
Sbjct: 173 HRGNYTCHASYTYLGKQYPI----TRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQ 228
Query: 149 IPCDVDGYPIPQVFWYKDGQVI--------------ENDGVHYRITESNRLHINQANATD 194
+ C+V G +W +G VI EN R T L+I++ +
Sbjct: 229 LICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF 288
Query: 195 -SGEYRCVASNSYTSDENAVTIRV 217
+ C A N++ D + +
Sbjct: 289 YKHPFTCFAKNTHGIDAAYIQLIY 312
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 71.7 bits (175), Expect = 8e-14
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 136 LETQVFGVGSDISIPC------DVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQ 189
+ Q V D + C + +P++ WYKD + + D +H+ +RL +
Sbjct: 110 IFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG-VKDRLIVMN 168
Query: 190 ANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLF 232
G Y C AS +Y + +T +E I + + P+
Sbjct: 169 VAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVI 211
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 4e-11
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 149 IPCDVDGYP-IPQVFWYKDGQVIE-NDGVHYRITESNR-LHINQANATDSGEYRCVASNS 205
PC ++ + WYKD + RI + L A DSG Y CV NS
Sbjct: 25 RPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNS 84
Query: 206 YTSDENAVTIRV 217
++ +
Sbjct: 85 SYCLRIKISAKF 96
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 3e-15
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEND---GVHYRITESN-- 183
PV + LE Q VG + + +V QV W K+G + + YR +
Sbjct: 8 PVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKR 66
Query: 184 -RLHINQANATDSGEYRCVASNSYTS 208
L + D G Y+ + +
Sbjct: 67 HILIFSDVVQEDRGRYQVITNGGQCE 92
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 3e-15
Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 10/99 (10%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIE-NDGVHYRITESNR-------LHI 187
+TQ G I C + P P ++ W V+E Y + + L I
Sbjct: 21 QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTI 80
Query: 188 NQANATD-SGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
+ D Y C A NS+ SD + ++ +G +
Sbjct: 81 SNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGP 119
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 3e-15
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRC 200
G I + ++ +V W K+GQ I+ G Y L I+Q + D Y+C
Sbjct: 31 GHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQC 89
Query: 201 VASNSYTS 208
V S
Sbjct: 90 VVGGEKCS 97
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 73.5 bits (180), Expect = 4e-15
Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 11/103 (10%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESNR- 184
LVP +G+ + C DG P + W+KDG + N
Sbjct: 102 LVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSS 161
Query: 185 ---------LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
L + A DSGEY C A N Y + + ++
Sbjct: 162 FTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 204
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 6e-12
Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 10/98 (10%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG----------QVIENDGVHYRIT 180
V I + C G+ P+V W I
Sbjct: 3 SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF 62
Query: 181 ESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
S+ + + D+GEY C+ S + V+I +
Sbjct: 63 SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 4e-15
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESNR--- 184
V + L+T G S C + W G+ + + ++ T R
Sbjct: 8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSS-RFQATRQGRKYI 66
Query: 185 LHINQANATDSGEYRCVASNSYTS 208
L + +A +D+GE +
Sbjct: 67 LVVREAAPSDAGEVVFSVRGLTSK 90
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 70.8 bits (173), Expect = 5e-15
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 14/99 (14%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPI---PQVFWYKDG--QVIENDGVHYRITES------- 182
+ VG DI+ V + P + W+K + G H ++ E+
Sbjct: 13 KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRV 72
Query: 183 --NRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
+ I +A +G YRC + D + + V
Sbjct: 73 YTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE 111
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 75.6 bits (185), Expect = 5e-15
Identities = 32/252 (12%), Positives = 47/252 (18%), Gaps = 36/252 (14%)
Query: 3 QVRSENYELNKNMLTIKRVEPERLGA-YTCQAYNGLGRAVSWTVTLQALPSEKVADPN-- 59
R N + L I Y C G V V
Sbjct: 78 TRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYE 137
Query: 60 ---AIDYGTILSSAFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNV-------- 108
YG L +T Y+ + N
Sbjct: 138 LGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRY 197
Query: 109 -CLFGARSGYLKETQNGGYLVPVKVN---------ITLETQVFGVGSDISIPCDVDGYPI 158
C +K + V I +G +I C +
Sbjct: 198 DCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSL 257
Query: 159 PQ----VFWYKDGQVIENDGVHYRITESNR-------LHINQANATDSGE-YRCVASNSY 206
+ W I ++ L+ G Y C N Y
Sbjct: 258 LVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYY 317
Query: 207 TSDENAVTIRVE 218
T+ +E
Sbjct: 318 FDKTLTTTVVLE 329
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 1e-05
Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 14/85 (16%)
Query: 144 GSDISIPCDVDGYPI---------PQVFWYKDGQVIENDGVHYRITESNRLHINQANATD 194
G S C + V W K G+ ++ L I + D
Sbjct: 44 GEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR---VKNGDLWIANYTSND 100
Query: 195 SGE-YRCVASNS-YTSDENAVTIRV 217
S Y C + + V +
Sbjct: 101 SHRRYLCTVTTKNGDCVQGIVRSHI 125
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 8e-04
Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 1/68 (1%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAI 61
+ + Y + L I E E G Y C + + + + V
Sbjct: 170 LIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDV-RIKNDIVVSRCKILTVIPSQDH 228
Query: 62 DYGTILSS 69
+ IL
Sbjct: 229 RFKLILDP 236
|
| >1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1 Length = 454 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 6e-15
Identities = 50/221 (22%), Positives = 83/221 (37%), Gaps = 44/221 (19%)
Query: 364 AAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVN 421
D +VE++ L + ++ K+A D + + + E+ P + GSS MP K N
Sbjct: 232 GERDRIVEIASVLGIITGNVGKMARDWSLMM---QTEIAEVFEPTAKGRGGSSTMPHKRN 288
Query: 422 PTQCEALTMVAAQVMGNHVAVT----------IGGSNGHFELNVFKPLIVSNVLRSIRLI 471
P ++ A +V ++ +G H E L I +
Sbjct: 289 PVAAASVLAAANRVPALMSSIYQSMVQEHERSLGAW--HAEW---------LSLPEIFQL 337
Query: 472 ADSATAFTDKCVSGIVANEENIHR-------LLH-ESLMLVTALNPHIG----YDKAAKI 519
A T + G+ N EN+H+ L+ E++M+ AL PH+G +
Sbjct: 338 TAGALERTLDVLKGMEVNAENMHQNIECTHGLIMAEAVMM--ALAPHMGRLNAHHVVEAA 395
Query: 520 AKTAHKEGTTLKVAALK----LGYLTEEEFNKWVVPEDMLG 556
KTA E LK + Y + ++ PE LG
Sbjct: 396 CKTAVAEQKHLKDIISQVDEVKQYFNPSQLDEIFKPESYLG 436
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 7e-15
Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 5/84 (5%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN----R 184
V + LE GS + C + V W+ D + + I
Sbjct: 13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANE-LNEIDAQPGGYHV 71
Query: 185 LHINQANATDSGEYRCVASNSYTS 208
L + Q DSG A + S
Sbjct: 72 LTLRQLALKDSGTIYFEAGDQRAS 95
|
| >1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1 Length = 450 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 7e-15
Identities = 54/243 (22%), Positives = 78/243 (32%), Gaps = 48/243 (19%)
Query: 342 AAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGL 401
A +AE L P D LVE + L VA SL K DI L +
Sbjct: 210 AEALAEQLKLTLPEQPWH----TQRDRLVEFASVLGLVAGSLGKFGRDISLLM---QTEA 262
Query: 402 GELSLP--ENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVT----------IGGSNG 449
GE+ P + GSS MP K NP L A +V G + +G
Sbjct: 263 GEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLSTLFAAMPQEHERSLGLW-- 320
Query: 450 HFELNVFKPLIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLH--------ESL 501
H E L I + A G+ + + R L E++
Sbjct: 321 HAEW---------ETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAV 371
Query: 502 MLVTALNPHIG----YDKAAKIAKTAHKEGTTLKVAALK----LGYLTEEEFNKWVVPED 553
+ L +G + + + A E L+ L+ EE ++ + P
Sbjct: 372 SI--VLAQRLGRDRAHHLLEQCCQRAVAEQRHLRAVLGDEPQVSAELSGEELDRLLDPAH 429
Query: 554 MLG 556
LG
Sbjct: 430 YLG 432
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 74.4 bits (182), Expect = 8e-15
Identities = 37/241 (15%), Positives = 67/241 (27%), Gaps = 32/241 (13%)
Query: 6 SENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGT 65
+E E KN ++ E R G YTC NGL ++ V A +
Sbjct: 49 NEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSD 108
Query: 66 IL-------------------SSAFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWS 106
L + P++ + T + + C
Sbjct: 109 ALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVR-CAAQR 167
Query: 107 NVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIP-QVFWYK 165
+ S V++ + + G ++ C + W K
Sbjct: 168 DG--TWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLK 225
Query: 166 DGQVIENDGVH---------YRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216
++ + L I+ A DSG + C A+N++ S T++
Sbjct: 226 MNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLK 285
Query: 217 V 217
V
Sbjct: 286 V 286
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 5e-11
Identities = 15/99 (15%), Positives = 27/99 (27%), Gaps = 2/99 (2%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHI 187
P K+ + SD + C + + Q + + + + I
Sbjct: 90 DPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITI 149
Query: 188 -NQANATDSGEYRCVASNSYTSDE-NAVTIRVEGIFIHP 224
N A RC A T + T++V
Sbjct: 150 KNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAI 188
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 2e-07
Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 15/104 (14%)
Query: 125 GYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR 184
G P ++ + G +S+ C V W E + N
Sbjct: 8 GEPSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNE-----MVENKKNE 58
Query: 185 LHINQANATDSGEYRCVASNSYTSDENAVTIRVEG---IFIHPS 225
+A AT +G Y C SN TS ++ + V +F+
Sbjct: 59 WIQEKAEATRTGTYTCSNSNGLTS---SIYVFVRDPAKLFLVGL 99
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 9e-15
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN--- 183
+V K G+ ++ C+V +V WYKDG+ + + R+
Sbjct: 9 VVFAKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSS-KVRVEAVGCTR 66
Query: 184 RLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
RL + QA ++GEY C A S ++V G
Sbjct: 67 RLVVQQAGQAEAGEYSCEAGGQQLS----FRLQVAG 98
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 1e-14
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 9/100 (9%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RL 185
L C +P V W K + G ++ ++ RL
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASG-KHQPSQEGLTLRL 65
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
I+ DS Y C + + + V+G PS
Sbjct: 66 TISALEKADSDTYTCDIGQAQSR----AQLLVQGRRSGPS 101
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 69.3 bits (169), Expect = 1e-14
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 14/96 (14%)
Query: 136 LETQVFGVGSDISIPCDVDGYPI---PQVFWYKDGQ--VIENDGVHYRITES-------- 182
+ VG I+ V G + P V W+K + G H ++ +S
Sbjct: 11 PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVY 70
Query: 183 -NRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
LHI A +G YRC S D + + V
Sbjct: 71 LFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 1e-14
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 137 ETQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDS 195
+Q G+D++ C P + W + + L I +D+
Sbjct: 18 RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF---NGILTIRNVQPSDA 74
Query: 196 GEYRCVASNSYTSDENAVTIRVE 218
G Y C SN + D+ T+ V+
Sbjct: 75 GTYVCTGSNMFAMDQGTATLHVQ 97
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 1e-14
Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 11/103 (10%)
Query: 134 ITLETQVFGVGSDISIPCD-VDGYPIPQVFWYKDGQVIENDGVH-------YRITESNRL 185
+ + G + C G P P + W KDG +++ RI + L
Sbjct: 113 VEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNL 172
Query: 186 HINQANATDSGEYRCVASNSY---TSDENAVTIRVEGIFIHPS 225
I+ D G Y+C+A N S + ++V+ H
Sbjct: 173 LISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 3e-13
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ-VIENDGVHYRITESN-----RLHI 187
V ++ C V+G P P + W+KDG+ V N+ +R+ + +
Sbjct: 14 EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTM 73
Query: 188 NQANATDSGEYRCVASNSY-TSDENAVTIRV 217
D GEY CVA N + ++++
Sbjct: 74 QGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 2e-14
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 9/100 (9%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH-- 186
PV+ L+ G ++ C + P V W V+ Y + + +
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGD-KYSLRQEGAMLEL 65
Query: 187 -INQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
+ DSG Y C + TS T+ V + PS
Sbjct: 66 VVRNLRPQDSGRYSCSFGDQTTS----ATLTVTALPSGPS 101
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 2e-14
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 5/83 (6%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH-- 186
++V L VG ++ P W GQ + I E + H
Sbjct: 5 LIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASP-DCEIIEDGKKHIL 62
Query: 187 -INQANATDSGEYRCVASNSYTS 208
++ +GE A+N+ ++
Sbjct: 63 ILHNCQLGMTGEVSFQAANTKSA 85
|
| >3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP} Length = 451 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 49/218 (22%), Positives = 76/218 (34%), Gaps = 44/218 (20%)
Query: 367 DALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQ 424
DA+ E L V+ SL K+A DI + LGE++ P + SS MP K NP
Sbjct: 229 DAVAETVQFLALVSGSLGKLAMDISIMM---TTELGEVAEPFVRHRGASSTMPQKQNPVS 285
Query: 425 CEALTMVAAQVMGNHVAVT----------IGGSNGHFELNVFKPLIVSNVLRSIRLIADS 474
CE + A V + ++ G H E + + +A
Sbjct: 286 CELILAGARIVRNHATSMLDAMIHDFERATGPW--HLE---------WSAVPEGFAVASG 334
Query: 475 ATAFTDKCVSGIVANEENIHRLLH--------ESLMLVTALNPHIG----YDKAAKIAKT 522
+ + G+ + + L E++M+ AL PH G +D +
Sbjct: 335 ILYQAEFMLGGLQVFPDRMRENLDHSRGLIVAEAVMM--ALAPHTGRKEAHDIVYLGCRR 392
Query: 523 AHKEGTTLKVAALK----LGYLTEEEFNKWVVPEDMLG 556
A ++ T L L EE P + LG
Sbjct: 393 AVEDKTGLFEVLRTMPEVAKPLGEEALRDLTDPRNYLG 430
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 3e-14
Identities = 16/100 (16%), Positives = 28/100 (28%), Gaps = 13/100 (13%)
Query: 120 ETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI 179
E Q + + + L G +++ + P V I
Sbjct: 93 EVQLLVFGLTANSDTHLL-----QGQSLTLTLESPPGSSPSVQCRSPRGKN--------I 139
Query: 180 TESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
L ++Q DSG + C + E + I V
Sbjct: 140 QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA 179
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 2e-08
Identities = 15/102 (14%), Positives = 25/102 (24%), Gaps = 23/102 (22%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE-------------------SN 183
G + + C Q W Q+ +T+ +
Sbjct: 9 KGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 68
Query: 184 RLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
L I DS Y C + V + V G+ +
Sbjct: 69 PLIIKNLKIEDSDTYICEVEDQKEE----VQLLVFGLTANSD 106
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 70.5 bits (172), Expect = 5e-14
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 6/98 (6%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESNRLHI 187
P ++ +G+D + C+ +G Q W K S + +
Sbjct: 122 PSGTRCFVDGSEE-IGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISV 180
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
A++ SG Y C N SD+ + + V + PS
Sbjct: 181 KNASSEYSGTYSCTVQNRVGSDQCMLRLDV----VPPS 214
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 8e-06
Identities = 12/127 (9%), Positives = 28/127 (22%), Gaps = 30/127 (23%)
Query: 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQ----VFWYKDGQVIENDGVHYRITESNR- 184
+ + + G +PC P Q + W + + ++
Sbjct: 1 LSITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKI 60
Query: 185 -------------------------LHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
+++ +D G Y+C + + V
Sbjct: 61 YDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV 120
Query: 220 IFIHPSC 226
C
Sbjct: 121 KPSGTRC 127
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 6e-14
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHI 187
+ + G G + C V P V W+KD + ++ V Y + L I
Sbjct: 484 RFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS-VKYMKRYNGNDYGLTI 542
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRV 217
N+ D GEY A NSY + E V + V
Sbjct: 543 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 6e-14
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG----VHYRITESNRLHI-----NQ 189
+ G ++ C +G P P + WYK G+ +E D H + S L +
Sbjct: 19 LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 78
Query: 190 ANATDSGEYRCVASNSY-TSDENAVTIRVEG 219
+ D G Y CVA N + + ++ V
Sbjct: 79 KSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 6e-14
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 129 PVKVNITLETQVFGV--GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN--- 183
PV + + + + C++ WYKDGQ +E +
Sbjct: 8 PVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESE-LLVVKMDGRKH 65
Query: 184 RLHINQANATDSGEYRCVASNSYTS 208
RL + +A DSGE+ C
Sbjct: 66 RLILPEAKVQDSGEFECRTEGVSAF 90
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 6e-14
Identities = 42/257 (16%), Positives = 79/257 (30%), Gaps = 49/257 (19%)
Query: 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNAIDYGTILS- 68
K++L + G YTC N + V++ + + S + + +
Sbjct: 76 KEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEY 135
Query: 69 ----------SAFPSESASPVVT---------QTTTTTTEATSPHVYAALTH------CV 103
+ S P +T E + AL CV
Sbjct: 136 GIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCV 195
Query: 104 ---PWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGV--GSDISIPCDV----D 154
P + R+ +K + VP ++ + V+ G ++ IPC V
Sbjct: 196 VTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFL 255
Query: 155 GYPIPQVFWYKDGQVIENDGVHYRITESNR------------LHINQANATD-SGEYRCV 201
+V+W DG+ ++ + I ES L I + + D Y C
Sbjct: 256 MDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCH 315
Query: 202 ASNSYTSDENAVTIRVE 218
A ++ A ++ +
Sbjct: 316 ARSAKGEVAKAAKVKQK 332
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 5e-12
Identities = 18/140 (12%), Positives = 35/140 (25%), Gaps = 9/140 (6%)
Query: 137 ETQVFGVGSDISIPCD-----VDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQAN 191
+++ I C P + WY I+N + I E L A
Sbjct: 128 VHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNF--NNVIPEGMNLSFLIAL 185
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQ 251
+++G Y CV + +T + + +P + +
Sbjct: 186 ISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELL 245
Query: 252 FCCESCTRAGQLPSYGPHIK 271
C +
Sbjct: 246 IPCTVYFSFLMDSR--NEVW 263
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 2e-10
Identities = 15/82 (18%), Positives = 24/82 (29%), Gaps = 7/82 (8%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQ------VIENDGVHYRIT-ESNRLHINQANATDS 195
+ + WY Q I RI+ E + L D+
Sbjct: 32 FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDT 91
Query: 196 GEYRCVASNSYTSDENAVTIRV 217
G Y C+ N+ + A + V
Sbjct: 92 GNYTCMLRNTTYCSKVAFPLEV 113
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 6e-14
Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANAT 193
QV G + ++ P +V WYK+GQ I Y L IN T
Sbjct: 17 AYQVD-KGGRVRFVVEL-ADPKLEVKWYKNGQEIRPST-KYIFEHKGCQRILFINNCQMT 73
Query: 194 DSGEYRCVASNSYTS 208
D EY A + S
Sbjct: 74 DDSEYYVTAGDEKCS 88
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 7e-14
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RL 185
P + L+T+ G+ ++ C++ + V W K + + + G Y + + L
Sbjct: 8 PARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGG-RYSLKQDGTRCEL 64
Query: 186 HINQANATDSGEYRCVASNSYTS 208
I+ + D+GEY C+ TS
Sbjct: 65 QIHDLSVADAGEYSCMCGQERTS 87
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 7e-14
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN-RLHINQANATDSGEYRCV 201
+G ++I CD + +V+ + + + G + ++ N L + D G Y C
Sbjct: 260 LGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCY 319
Query: 202 ASNSYTSDENAVTIRVEGIFIHPS 225
A ++ +V ++V +H
Sbjct: 320 AMGETFNETLSVELKVYNFTLHGH 343
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 7e-14
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN-DGVHYRITESN---R 184
+ V LE G + + C+V V W+K+G+ I YRI
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65
Query: 185 LHINQANATDSGEYRCVASNSYTS 208
L I A D+ EY + + +S
Sbjct: 66 LIIEGATKADAAEYSVMTTGGQSS 89
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 8e-14
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 5/83 (6%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RL 185
+ + GS + + +V W + G I Y + L
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASN-KYGLATEGTRHTL 65
Query: 186 HINQANATDSGEYRCVASNSYTS 208
+ + D G Y +A +S
Sbjct: 66 TVREVGPADQGSYAVIAGSSKVK 88
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 1e-13
Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 15/107 (14%)
Query: 120 ETQNGGYLVPVKVNITLE-------TQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIE 171
+T PV + + E F G I + C P+ +V ++++G+ +
Sbjct: 69 QTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQK 128
Query: 172 NDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDE-NAVTIRV 217
I QAN + SG+Y C + YT VTI V
Sbjct: 129 FSH------LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 1e-12
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 129 PVKVNITLE---TQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIENDGVHYRITESNR 184
P K + LE V +++ C P + W+ +G +I T +
Sbjct: 2 PPKAVLKLEPPWINVL-QEDSVTLTCQGARSPESDSIQWFHNGNLIP--------THTQP 52
Query: 185 LHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ +AN DSGEY C + SD V + V
Sbjct: 53 SYRFKANNNDSGEYTCQTGQTSLSD--PVHLTV 83
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 1e-13
Identities = 30/229 (13%), Positives = 57/229 (24%), Gaps = 29/229 (12%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL----------QALPSEKVADPNAIDYGT 65
+ + R+E E G Y C+ + L + + A D
Sbjct: 94 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVL 153
Query: 66 ILSSAFPSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGAR---SGYLK-ET 121
+ + + VV+ T EA + S L +R L
Sbjct: 154 VATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIV 213
Query: 122 QNGGYLVPVKVNIT-----------LETQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQV 169
+ + + + D+ + C D P + W
Sbjct: 214 NYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGS 273
Query: 170 IENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ N + +G Y C A+N + V + +
Sbjct: 274 LPK---GVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT 319
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 2e-06
Identities = 22/122 (18%), Positives = 37/122 (30%), Gaps = 26/122 (21%)
Query: 121 TQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYP----IPQVFWYKDGQVI------ 170
Q G V + F +G+D+ + C I QV W K
Sbjct: 7 GQQMGRDPSQVVQVNDSMYGF-IGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAI 65
Query: 171 --ENDGVHYRITESNR------------LHINQANATDSGEYRC-VASNSYTSDENAVTI 215
+ GV R + +++ D G Y C A+ + E+ + +
Sbjct: 66 YNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNL 125
Query: 216 RV 217
V
Sbjct: 126 TV 127
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 2e-13
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---R 184
+P+K L + G+ + C++ V W+K + + + + + +
Sbjct: 18 LPIKFTEGLRNEEATEGATAVLRCELSKMA--PVEWWKGHETLRDGD-RHSLRQDGARCE 74
Query: 185 LHINQANATDSGEYRCVASNSYTS 208
L I A D+GEY C+ TS
Sbjct: 75 LQIRGLVAEDAGEYLCMCGKERTS 98
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 2e-13
Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 15/120 (12%)
Query: 120 ETQNGGYLVPVKVNIT-------LETQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIE 171
+TQ PV++ + VF I + C + +V + ++G+ +
Sbjct: 72 QTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRK 131
Query: 172 NDGVHYRITESNRLHINQANATDSGEYRCVASNSYTS-DENAVTIRVEGIFIHPSCRDLP 230
++ +I +A DSG Y C + V I + +
Sbjct: 132 YFH------HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVSTISSFF 185
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 1e-10
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 129 PVKVNITLE---TQVFGVGSDISIPCDVDGYPIPQ-VFWYKDGQVIENDGVHYRITESNR 184
K + LE +V +++ C P Q W+ + +I ++++
Sbjct: 5 LPKAVVFLEPQWYRVL-EKDSVTLKCQGAYSPEDQSTQWFHNESLIS--------SQASS 55
Query: 185 LHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
I+ A DSGEYRC S SD V + V
Sbjct: 56 YFIDAATVDDSGEYRCQTQLSTLSD--PVQLEV 86
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 2e-13
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 15/107 (14%)
Query: 120 ETQNGGYLVPVKVN-------ITLETQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIE 171
+ Q PV + + +V G + + C + + +V +YKDG+ ++
Sbjct: 69 QHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK 128
Query: 172 NDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDE-NAVTIRV 217
E++ + I A DSG Y C E + I V
Sbjct: 129 YWY------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITV 169
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 4e-13
Identities = 21/102 (20%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 128 VPVKVNITLE---TQVFGVGSDISIPCDVDG-YPIPQVFWYKDGQVIENDGVHYRITESN 183
VP K ++L ++F G ++++ C+ + + + W+ +G + E ++
Sbjct: 1 VPQKPKVSLNPPWNRIF-KGENVTLTCNGNNFFEVSSTKWFHNGSLSE--------ETNS 51
Query: 184 RLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
L+I A DSGEY+C S+ + + + + + S
Sbjct: 52 SLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQAS 93
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 3e-13
Identities = 12/81 (14%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEY 198
++ + ++ C+V P++ Y+DG+ + S R+ ++ + S ++
Sbjct: 110 KISWTCINTTLTCEVMNGTDPELNLYQDGKHL---------KLSQRVITHKWTTSLSAKF 160
Query: 199 RCVASNSYTSDENAVTIRVEG 219
+C A N + + + +
Sbjct: 161 KCTAGNKVSKESSVEPVSCPE 181
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 6e-09
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 139 QVFG-VGSDI--SIPCDVDGYPIPQVFWYKDGQVIE-----------NDGVHYRITESNR 184
+ +G +G DI IP I + W K + + Y++ ++
Sbjct: 8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT 67
Query: 185 LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
L I D Y+ ++ + ++ I S
Sbjct: 68 LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLK-IQERVS 107
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 3e-13
Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 6/100 (6%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH-- 186
++V + C+V WYK+G + I+ R H
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSK-RITISHVGRFHKL 65
Query: 187 -INQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
I+ D G+Y V S + E PS
Sbjct: 66 VIDDVRPEDEGDYTFVPDGYALSLSAKLNFL-EIKVSGPS 104
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 4e-13
Identities = 39/229 (17%), Positives = 64/229 (27%), Gaps = 28/229 (12%)
Query: 4 VRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNA-I 61
V N + E E TC G TVT+ + P+ V +
Sbjct: 236 VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEV 295
Query: 62 DYG---TILSSAFPSESAS------PVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFG 112
G T+ A P + + +AT + + C V
Sbjct: 296 SEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFS-CSATLEV---A 351
Query: 113 ARSGYLKETQNGGYLVP--VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVI 170
+ + +T+ L + + S + C G P+P++ KDG
Sbjct: 352 GQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 411
Query: 171 ENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
G +T G Y C A ++ VT+ V
Sbjct: 412 LPIGESVTVTRD-----------LEGTYLCRARSTQGEVTREVTVNVLS 449
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 5e-08
Identities = 11/92 (11%), Positives = 26/92 (28%), Gaps = 4/92 (4%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDG-YPIPQ--VFWYKDGQVIENDGVHYRITESNRL 185
P +V + VG ++++ C V+G P V + + ++ + E
Sbjct: 86 PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVT-T 144
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + C +
Sbjct: 145 TVLVRRDHHGANFSCRTELDLRPQGLELFENT 176
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 4e-06
Identities = 19/217 (8%), Positives = 47/217 (21%), Gaps = 38/217 (17%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLG-RAVSWTVTLQALPSEKVADPNAIDYGTILSSAFPSE 74
T+ ++C+ L + + A + A + +
Sbjct: 144 TTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVD 203
Query: 75 SASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGAR-----SGYLKETQNGGY--- 126
+ V + + V+ AL V S + G
Sbjct: 204 TQGT-VVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLT 262
Query: 127 ------------------LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ 168
N+ L G+++++ C+ +
Sbjct: 263 CAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQP 322
Query: 169 VIENDGVHYRITESNRLHINQANATDSGEYRCVASNS 205
+ +L + + + C A+
Sbjct: 323 LG----------PRAQLLLKATPEDNGRSFSCSATLE 349
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 1e-04
Identities = 7/87 (8%), Positives = 23/87 (26%), Gaps = 5/87 (5%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQA 190
+ +++ + G + + C + + +NR +
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPMLLGIET-----PLPKKELLLPGNNRKVYELS 55
Query: 191 NATDSGEYRCVASNSYTSDENAVTIRV 217
N + + C ++ + V
Sbjct: 56 NVQEDSQPMCYSNCPDGQSTAKTFLTV 82
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 69.8 bits (170), Expect = 5e-13
Identities = 16/100 (16%), Positives = 29/100 (29%), Gaps = 9/100 (9%)
Query: 126 YLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRL 185
L+ + +T + G +++ + P V I L
Sbjct: 94 QLLVFGLTANSDTHLL-QGQSLTLTLESPPGSSPSVQCRSPRGKN--------IQGGKTL 144
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
++Q DSG + C + E + I V S
Sbjct: 145 SVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASS 184
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 3e-10
Identities = 27/221 (12%), Positives = 64/221 (28%), Gaps = 37/221 (16%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAF 71
L++ ++E + G +TC + V + + + L +K + G + +F
Sbjct: 140 GGKTLSVSQLELQDSGTWTCTVLQNQKK-VEFKIDIVVLAFQKASSIVYKKEGEQVEFSF 198
Query: 72 PSESASPVVTQTTTTTTEAT-SPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPV 130
P +T + +A + + +T + V + + L
Sbjct: 199 PLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLT 258
Query: 131 KVNITLETQVFGV------------------------GSDISIPCDVDGYPIPQVF--WY 164
+ G ++ C+V G P++
Sbjct: 259 LPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLK 318
Query: 165 KDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNS 205
+ + S R ++G ++C+ S+S
Sbjct: 319 LENK---------EAKVSKREKAVWVLNPEAGMWQCLLSDS 350
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 1e-07
Identities = 15/102 (14%), Positives = 26/102 (25%), Gaps = 23/102 (22%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE-------------------SN 183
G + + C Q W Q+ +T+ +
Sbjct: 8 KGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 67
Query: 184 RLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
L I DS Y C + + V + V G+ +
Sbjct: 68 PLIIKNLKIEDSDTYICEVEDQ----KEEVQLLVFGLTANSD 105
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 6e-07
Identities = 18/250 (7%), Positives = 48/250 (19%), Gaps = 31/250 (12%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKV------ 55
R ++ L IK ++ E Y C+ + L A +
Sbjct: 55 ADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSL 114
Query: 56 -----ADPNAIDYGTILSSAFPSESASPVVTQTTTTTT-------EATSPHVYAALTHCV 103
+ P + S + ++ +
Sbjct: 115 TLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK--- 171
Query: 104 PWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQV-- 161
++ + + + G V + + ++ + +
Sbjct: 172 --IDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITF 229
Query: 162 FWYKDGQVIENDGVHYRITESNR------LHINQANATDSGEYRCVASNSYTSDENAVTI 215
++ ++ + L SG V +
Sbjct: 230 DLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL 289
Query: 216 RVEGIFIHPS 225
V
Sbjct: 290 VVMRATQLQK 299
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 6e-13
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFW-YKDGQVIENDGVHYRIT--ESN 183
+ P+ +++ E F S +++ C V+ +P P V W +G + + +
Sbjct: 102 VKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG 161
Query: 184 RLHINQANA---TDSGEYRCVASNS 205
L + + CV N
Sbjct: 162 SLSVAVDLSLPKPWHLPVTCVGKND 186
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-07
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 22/97 (22%)
Query: 143 VGSDISIPC---DVDGYPIPQVFWYKDG---QVIENDGVH----------------YRIT 180
+G +++ V P +V W+K G + + +H +R
Sbjct: 5 LGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA 64
Query: 181 ESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ L + AN + G Y C T + V
Sbjct: 65 NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV 101
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-12
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH-- 186
+K+ L Q +G +I + C++ + W K+G ++ ++ + R+H
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESD-RLKVVQKGRIHKL 63
Query: 187 -INQANATDSGEYRCVASNSYTS 208
I A D G+Y +
Sbjct: 64 VIANALTEDEGDYVFAPDAYNVT 86
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 1e-12
Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 15/107 (14%)
Query: 120 ETQNGGYLVPVKVN-------ITLETQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIE 171
+T PV++ + VF I + C + +V + ++G+ +
Sbjct: 72 QTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK 131
Query: 172 NDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDE-NAVTIRV 217
++ HI +A DSG Y C + V I +
Sbjct: 132 YFH------HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 5e-11
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 129 PVKVNITLE---TQVFGVGSDISIPCDVDGYPIPQ-VFWYKDGQVIENDGVHYRITESNR 184
K + LE V +++ C P W+ + +I ++++
Sbjct: 5 LPKAVVFLEPQWYSVL-EKDSVTLKCQGAYSPEDNSTQWFHNESLIS--------SQASS 55
Query: 185 LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
I+ A DSGEYRC + S SD + + + + +
Sbjct: 56 YFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAP 96
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 2e-12
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 128 VPVKVNIT--LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN-- 183
V + + + C++ P +V W KDG+ + + + +
Sbjct: 10 VSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESP-ALLLQKEDTV 67
Query: 184 -RLHINQANATDSGEYRCVASNSYTS 208
RL + DSGEY C + S
Sbjct: 68 RRLVLPAVQLEDSGEYLCEIDDESAS 93
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 2e-12
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 7/93 (7%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIENDGVHYRITESNRLH 186
E + + ++ C G P P + W +D + H LH
Sbjct: 105 GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGP---QRSLH 161
Query: 187 INQANATDSGEYRCVASNSY-TSDENAVTIRVE 218
+ + + C A N+ + TI V
Sbjct: 162 V--PGLNKTSSFSCEAHNAKGVTTSRTATITVL 192
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 6e-11
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 134 ITLETQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIEN-----------DGVHYRITE 181
G ++ C + P+V W +DGQ++E +
Sbjct: 7 GNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIV 66
Query: 182 SNRLHINQANATDSGEYRCVASNSY-TSDENAVTIRVEG 219
++L I +D+G+Y+C+ + T + +EG
Sbjct: 67 VSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG 105
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 3e-12
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 10/102 (9%)
Query: 126 YLVPVKVNITLETQVFGVGSDISIPCDVDGYP-IPQVFWYKDG-----QVIENDGVHYRI 179
P +V ++ G + C + P + WYK ++ + +
Sbjct: 80 LHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFV 139
Query: 180 TES---NRLHINQAN-ATDSGEYRCVASNSYTSDENAVTIRV 217
+ S + LHI N D G+YRC ++S SD+ +T+RV
Sbjct: 140 SSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 4e-12
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 10/87 (11%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIP--QVFWYKDGQVIENDGVHYRITESNRLHINQANA 192
T+ T V +GS I + C ++ W K G V++ D + +
Sbjct: 4 TVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA-----LPGQKTEFKVDSD 58
Query: 193 TDSGEYRCVASNSYTSDENAVTIRVEG 219
GEY CV I++ G
Sbjct: 59 DQWGEYSCVFLPEPMGT---ANIQLHG 82
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 61.7 bits (149), Expect = 7e-12
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 14/91 (15%)
Query: 143 VGSDISIPCDVDGYPI---PQVFWYKD--GQVIENDGVHYRITESN---------RLHIN 188
G D + V+G + P + W+K ++ G + ES+ LHI
Sbjct: 26 TGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIG 85
Query: 189 QANATDSGEYRCVASNSYTSDENAVTIRVEG 219
+ D G YR T D I VE
Sbjct: 86 KVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116
|
| >3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 9e-12
Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 14/129 (10%)
Query: 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG-QVIENDGVHYR---------ITE 181
V E VGS +S+ CD D ++ + Q +END +
Sbjct: 5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPL 64
Query: 182 SNR-LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVE 240
HI DSG+YRC+ D +T++V+ ++ R L + ++ +
Sbjct: 65 GKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLT 124
Query: 241 GRYCQHHYY 249
CQ Y
Sbjct: 125 ---CQARGY 130
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 64.8 bits (157), Expect = 2e-11
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 11/101 (10%)
Query: 128 VPVKVNITLETQVFGVGS--DISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR- 184
V V V+ Q+ IP VDG P P + W +G V+ +
Sbjct: 243 VQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAA 302
Query: 185 --------LHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
L +NQ ++G Y +A+N + ++
Sbjct: 303 NETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 343
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 64.0 bits (155), Expect = 3e-11
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 1/88 (1%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHI-NQ 189
+ + + VG D+ + C V+G + Q W + S L + N
Sbjct: 160 TLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANV 219
Query: 190 ANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + C A N E +V + V
Sbjct: 220 TSDLNRKNVTCWAENDVGRAEVSVQVNV 247
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 3e-11
Identities = 27/209 (12%), Positives = 52/209 (24%), Gaps = 56/209 (26%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAF 71
+K + + G Y C+ + + + SA
Sbjct: 47 DKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQ--------------------VYYRMGSAD 86
Query: 72 PSESASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVK 131
++ + + + P K
Sbjct: 87 DAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQ-----------------------TPYK 123
Query: 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR-LHI-NQ 189
V+I+ G+ + + C YP ++ W + + I D I L +
Sbjct: 124 VSIS--------GTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEF 173
Query: 190 ANATDSGEYRCVASNSYTSDENA-VTIRV 217
+ SG Y C S D N + +R
Sbjct: 174 SELEQSGYYVCYPRGSKPEDANFYLYLRA 202
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 53.4 bits (127), Expect = 2e-08
Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 16/100 (16%)
Query: 120 ETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI 179
++ G +LV V + + CD + W+KDG++I +
Sbjct: 2 QSIKGNHLVKVYDY--------QEDGSVLLTCDA---EAKNITWFKDGKMIGFLTEDKKK 50
Query: 180 TESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
++ G Y+C S + +
Sbjct: 51 -----WNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSA 85
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 8e-11
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYK-DGQVIENDGVHYRIT--ESNRLHINQANAT 193
G + C + V W +G V+ + RI L+
Sbjct: 349 ADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQ 407
Query: 194 DSGEYRCVASNSYTSDENAVTIRVEGIFIHP 224
D+G Y C+ SNS + + T+ V G H
Sbjct: 408 DTGMYTCMVSNSVGNTTASATLNVTGTHHHH 438
|
| >2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A* Length = 444 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 8e-11
Identities = 46/220 (20%), Positives = 74/220 (33%), Gaps = 41/220 (18%)
Query: 364 AAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVN 421
D L +A S+ K+A +IR L + E+ + + GSS MP K N
Sbjct: 225 LQRDRHAHYMSTLALIATSIEKMAVEIRGLQ---KSETREVEEAFAKGQKGSSAMPHKRN 281
Query: 422 PTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVF----KPLIVSNVLRSIR----LIAD 473
P E +T +A + G + +E NV + + S+ R I + +
Sbjct: 282 PIGSENMTGLARVIRGYMMTA--------YE-NVPLWHERDISHSSAERVILPDATIALN 332
Query: 474 SATAFTDKCVSGIVANEENIHR--------LLHESLMLVTALNPH-IG----YDKAAKIA 520
V + EN+ R + + +ML L + YD A
Sbjct: 333 YMLNRFGNIVKNLTVYPENMKRNMTRTYGLIYSQRVML--TLIDKGMVREEAYDIVQPKA 390
Query: 521 KTAHKEGTTLKVAALK----LGYLTEEEFNKWVVPEDMLG 556
A + K LT+EE N+ E +
Sbjct: 391 MEAWETQVQFKELVEADERITSKLTQEEINECFNYEHHMQ 430
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKD-GQVIENDGVHYRIT--ESNRLHINQANATDSGEYR 199
G + C P+ V W G V+ + H RI+ L+ + +D+G Y
Sbjct: 366 EGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYT 423
Query: 200 CVASNSYTSDENAVTIRVEGIFIHPS 225
C+ +N + + + V H
Sbjct: 424 CMVTNVAGNSNASAYLNVSTAGTHHH 449
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKD-GQVIEND-GVHYRITESNRLHINQANATDSGEYRCV 201
G + C DG P P + W ++ + L + A D+G Y C+
Sbjct: 400 GHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCI 459
Query: 202 ASNSYTSDENAVTIRV 217
A+N+ +D + V
Sbjct: 460 AANAGGNDSMPAHLHV 475
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 57.1 bits (137), Expect = 3e-10
Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 13/108 (12%)
Query: 124 GGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVF--WYKDGQVIENDGVHYRITE 181
G + V ++ + ++ VG + + C + W ++ + R +
Sbjct: 4 GYRIYDVVLSPSHGIELS-VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 62
Query: 182 SNR----------LHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
+ L I+ +D G Y C AS+ + +N+ +RV
Sbjct: 63 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 110
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 4e-10
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 12/89 (13%)
Query: 143 VGSDISIPCDVDGYPIPQV--FWYKDGQVIENDGVHYRITE----------SNRLHINQA 190
VG + + C + W ++ + R + + L I+
Sbjct: 119 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 178
Query: 191 NATDSGEYRCVASNSYTSDENAVTIRVEG 219
+D G Y C AS+ + +N+ +RV
Sbjct: 179 TRSDQGLYTCAASSGLMTKKNSTFVRVHE 207
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 2e-04
Identities = 13/79 (16%), Positives = 21/79 (26%), Gaps = 3/79 (3%)
Query: 142 GVGSDISIPCDVDGYPIPQVFWYK--DGQVIENDGVHYRITESNRLHINQANATDSGEYR 199
+ IPC V + DG I + +G
Sbjct: 22 NKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVF 80
Query: 200 CVASNSYTSDENAVTIRVE 218
C A + S ++ + I V
Sbjct: 81 CEAKINDESYQSIMYIVVV 99
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 5e-10
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 2/96 (2%)
Query: 131 KVNITLETQVF-GVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQ 189
K+ T E++ +G +S+ C G P W N G ++ L +N
Sbjct: 2 KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN-GKVTNEGTTSTLTMNP 60
Query: 190 ANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
+ + Y C A+ E + + + P
Sbjct: 61 VSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPE 96
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 2e-05
Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 19/119 (15%)
Query: 117 YLKETQNGGYLVPVKVNITL----------ETQVFGVGSDISIPCDVDG-YPIP--QVFW 163
YL + + + + + G I++ C V YP ++
Sbjct: 69 YLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDL 128
Query: 164 YKDGQVIENDGVHYRI------TESNRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216
K ++++ T+S + C A ++ T+R
Sbjct: 129 LKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVR 187
|
| >1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A Length = 429 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 6e-10
Identities = 43/217 (19%), Positives = 71/217 (32%), Gaps = 41/217 (18%)
Query: 367 DALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQ 424
D L VA + +IA +IR L R + E+ P + + GSS MP K NP
Sbjct: 216 DRHAFYLSTLAIVAAGIERIAVEIRHLQ---RTEVLEVEEPFRKGQRGSSAMPHKKNPIT 272
Query: 425 CEALTMVAAQVMGNHVAVTIGGSNGHFELNVF----KPLIVSNVLRSIR----LIADSAT 476
CE LT ++ + E N+ + + S+V R +
Sbjct: 273 CERLTGLSRMMRAYVDPS--------LE-NIALWHERDISHSSVERYVFPDATQTLYYMI 323
Query: 477 AFTDKCVSGIVANEENIHRLLH--------ESLMLVTALNPH-IG----YDKAAKIAKTA 523
V + NEE + + + + ++L L + YD + A
Sbjct: 324 VTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLL--KLIEKGLTRKEAYDIVQRNALKT 381
Query: 524 HKEGTTLKVAALK----LGYLTEEEFNKWVVPEDMLG 556
L+ +T+EE + L
Sbjct: 382 WNSEKHFLEYLLEDEEVKKLVTKEELEELFDISYYLK 418
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 6e-10
Identities = 7/74 (9%), Positives = 24/74 (32%), Gaps = 9/74 (12%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVAS 203
S+ ++ C+V ++ Y+ + + + ++ ++C A
Sbjct: 110 CSNATLTCEVLEGTDVELKLYQGKEH---------LRSLRQKTMSYQWTNLRAPFKCKAV 160
Query: 204 NSYTSDENAVTIRV 217
N + + +
Sbjct: 161 NRVSQESEMEVVNC 174
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 8e-08
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 12/91 (13%)
Query: 140 VFG-VGSDI--SIPCDVDGYPIPQVFWYKDGQVIE---------NDGVHYRITESNRLHI 187
V+G +G I +IP I +V W + ++ + I + L I
Sbjct: 6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKI 65
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRVE 218
DSG Y ++ + + +
Sbjct: 66 KNLTRDDSGTYNVTVYSTNGTRILNKALDLR 96
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 1e-09
Identities = 81/643 (12%), Positives = 168/643 (26%), Gaps = 225/643 (34%)
Query: 10 ELNKNMLTIKRV-----EPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVA----DPNA 60
++ K++L+ + + + + +G + WT+ + E V +
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAV--------SGT-LRLFWTLLSK--QEEMVQKFVEEVLR 88
Query: 61 IDYGTILSSAFPSESASPVVTQTTTTTTEA---TSPHVYAALTHCVPWSNVC---LFGAR 114
I+Y L S +E P + V+A NV +
Sbjct: 89 INYK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-------NVSRLQPYLKL 140
Query: 115 SGYLKETQNGGYLVPVKVNITLETQVFGVG------------SDISIPCDVDGYPIPQVF 162
L E + ++ + GV + C +D ++F
Sbjct: 141 RQALLELRPAKNVL-----------IDGVLGSGKTWVALDVCLSYKVQCKMDF----KIF 185
Query: 163 WYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFI 222
W + V + +L + R S++ +++ + +
Sbjct: 186 WLNLKNCNSPETV---LEMLQKLL---YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 223 ---HPSC----RD------LPLFA-NCKLIVEGRYCQ----------HHYYSQFCCESCT 258
+ +C + F +CK+++ R+ Q H + T
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 259 --------------RAGQLPSYGPHIKRAVEAEA---------AAADKKRRSRRS-LSVV 294
R LP E A + + + V
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPR---------EVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 295 NKWSLRQAFTTCYPVNLDPNDRQAL-----------NI----VSIFYFTYLVKLSELLET 339
N L + L+P + + + +I +S+ +F + ++
Sbjct: 351 NCDKLTTIIESSLN-VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 340 KCAAK----------IAELTGLPFKSAPNKFEALAAHDALVE------------------ 371
K + + + A H ++V+
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 372 -----------VSGALNTVAVSLM-KIANDIRFLASGPRCGLGELSLPENEPGSSIMPGK 419
+ + ++L + D RFL R S N GS
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR----HDSTAWNASGS------ 519
Query: 420 VNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIRLIADSATAFT 479
+ T L +L +KP I N + RL+ F
Sbjct: 520 ILNT----LQ----------------------QLKFYKPYICDNDPKYERLVNAILD-FL 552
Query: 480 DKCVSGIVANEENIHRLLHESLMLVTALNPHIG-YDKAAKIAK 521
K EEN+ + L+ + + +++A K +
Sbjct: 553 PKI-------EENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 1e-09
Identities = 14/94 (14%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 126 YLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR- 184
+ + + + +++ C + + W + Q ++ ++++N
Sbjct: 107 HQPVTQPFLQVTNTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTE-RMTLSQNNSI 164
Query: 185 LHINQANATDSGEYRCVASNSYTSDE-NAVTIRV 217
L I+ D+GEY+C SN + N++ + +
Sbjct: 165 LRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI 198
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 5e-06
Identities = 14/114 (12%), Positives = 26/114 (22%), Gaps = 19/114 (16%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV--------------- 175
+V I +++ + + WYK + +
Sbjct: 1 EVTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQA 60
Query: 176 ---HYRITESNRLHINQANATDSGEYRCVASNS-YTSDENAVTIRVEGIFIHPS 225
I + L D G Y ++ Y + V V P
Sbjct: 61 YSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPF 114
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 9e-04
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
N ++L I ++ E G Y C+ N + S ++ L
Sbjct: 161 NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLD 197
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 2e-09
Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 12/85 (14%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQV--FWYKDGQVIENDGVHYRITESNR---------- 184
ETQ GSD+S C + W D + +++ + +
Sbjct: 18 ETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTI 77
Query: 185 LHINQANATDSGEYRCVASNSYTSD 209
L + T G Y+CV SN + S
Sbjct: 78 LRLRNVEFTSEGXYQCVISNHFGSS 102
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 3e-09
Identities = 18/112 (16%), Positives = 28/112 (25%), Gaps = 23/112 (20%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH------------ 176
T E G+DI++ C V WY EN
Sbjct: 136 NNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFG 195
Query: 177 -----------YRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + L I A TD+G C + + + +
Sbjct: 196 ITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 5e-06
Identities = 14/115 (12%), Positives = 23/115 (20%), Gaps = 34/115 (29%)
Query: 130 VKVNITLETQVFGVGSDISIPCDVD---GYPIPQVFWYKDGQVIENDG------------ 174
+ V T G + +PC P + W K +
Sbjct: 3 MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62
Query: 175 -------------------VHYRITESNRLHINQANATDSGEYRCVASNSYTSDE 210
+ L + + D G Y C + E
Sbjct: 63 LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTE 117
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 1e-08
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 12/102 (11%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDG-YPIPQVF---WYKDGQVIENDGVHYRITESN 183
+ V+I + F G ++ V G P+P W KD Q EN+ +
Sbjct: 1 MAFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN--------TA 52
Query: 184 RLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
L + A + ++G Y+ ++ T + +
Sbjct: 53 TLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIV 94
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 3e-07
Identities = 24/200 (12%), Positives = 54/200 (27%), Gaps = 56/200 (28%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAFPSES 75
+TI+ ++ G YT + + + + T L + V +
Sbjct: 147 ITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVES-----KTVALGNE 201
Query: 76 ASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNIT 135
S + +++ N+T
Sbjct: 202 ISLNYVVSEDIVGDSSGM--------------------------------------PNLT 223
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDS 195
++ + +G P + + G+ +E + IT L A D+
Sbjct: 224 IKYNWY---------LQREGQLSPTLIGSEVGEALEG----FSITPDGHLFKESATYDDT 270
Query: 196 GEYRCVASNSYTSDENAVTI 215
++ CVA ++ V +
Sbjct: 271 AKFWCVAKLYQQIEDETVEV 290
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 9e-05
Identities = 11/100 (11%), Positives = 26/100 (26%), Gaps = 17/100 (17%)
Query: 126 YLVPVKVNITLETQVFGVGSDISIPCDVD---GYPIPQVF-----WYKDGQVIENDGVHY 177
+ + +D+ + V G + W K VI+
Sbjct: 89 EAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT----- 143
Query: 178 RITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + I + A +G Y + + ++
Sbjct: 144 ----TQDITIQEFTADKNGVYTVKVWGESEDSAASASTKI 179
|
| >1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 Length = 403 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 41/186 (22%), Positives = 63/186 (33%), Gaps = 37/186 (19%)
Query: 367 DALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCE 426
++ ++ AL +A ++A +IR L+ R +GE+ E GSS MP K NPT E
Sbjct: 221 ESFAVLASALALMAAVFERLAVEIRELS---RPEIGEVV--EGGGGSSAMPHKANPTASE 275
Query: 427 ALTMVAAQVMGNHVAVTIGGSNGHFELNVF----KPLIVSNVLRSIR----LIADSATAF 478
+ +A V FE NV + L S R L D
Sbjct: 276 RIVSLARYVRALTHVA--------FE-NVALWHERDLTNSANERVWIPEALLALDEILTS 326
Query: 479 TDKCVSGIVANEENIHRLLH--------ESLMLVTALNPHIG-----YDKAAKIAKTAHK 525
+ + + +EE I L E M + Y KA ++ +
Sbjct: 327 ALRVLKNVYIDEERITENLQKALPYILTEFHMN--RMIKEGASRAEAYKKAKEVKALTFE 384
Query: 526 EGTTLK 531
Sbjct: 385 YQKWPV 390
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 55.4 bits (132), Expect = 3e-08
Identities = 13/107 (12%), Positives = 28/107 (26%), Gaps = 6/107 (5%)
Query: 126 YLVPVKVNITLETQV-FGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR 184
++ ++T + V + C V G+ + ++
Sbjct: 227 VYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDK 286
Query: 185 -----LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSC 226
+ I D+G Y C A + E + + S
Sbjct: 287 DGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEEST 333
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 51.5 bits (122), Expect = 5e-07
Identities = 31/281 (11%), Positives = 68/281 (24%), Gaps = 52/281 (18%)
Query: 2 IQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAI 61
I++ + + I ++ G Y CQA + P ++ +
Sbjct: 173 IRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLR 232
Query: 62 DYGTILSSAFPSES--------ASPVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLF-- 111
T + P + S T + P F
Sbjct: 233 GSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSV 292
Query: 112 ---------------GARSGY------LKETQNGGYLVPVKVNITLETQVFGVGSDISIP 150
GA S + + + GS +++
Sbjct: 293 VITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVL 352
Query: 151 CDVDGYPIPQV-FWYKDG--------QVIENDGV-------HYRITESNR-----LHINQ 189
C + + +W +++++G + E + +NQ
Sbjct: 353 CPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQ 412
Query: 190 ANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLP 230
+ D+G Y C+ + +EG ++
Sbjct: 413 LTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVT 453
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 49.2 bits (116), Expect = 2e-06
Identities = 35/256 (13%), Positives = 59/256 (23%), Gaps = 55/256 (21%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGR---AVSWTVTLQALPSEKVADPNAIDYGTILSSAF- 71
+ I + E G Y C A++ + L + + G SS
Sbjct: 292 VVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAV 351
Query: 72 --------------------PSESASPVVTQTTTTTTEATSPHV-----YAALTHCVPWS 106
P++ + + T V +
Sbjct: 352 LCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILN 411
Query: 107 NV---------CLFGARSGYLKETQNGGYLVPVKVNITLETQVFG-VGSDISIPCDVD-- 154
+ C L T ++ + N+ + V +G + +PC
Sbjct: 412 QLTSRDAGFYWC--LTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCK 469
Query: 155 --GYPIPQVFWYKDGQVIENDGVHYRITESNR---------LHINQANATDSGEYRCVAS 203
Y W G L +N D G Y C
Sbjct: 470 FSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVK 529
Query: 204 NSYTSDEN-AVTIRVE 218
+ E AV + VE
Sbjct: 530 QGHFYGETAAVYVAVE 545
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 46.5 bits (109), Expect = 2e-05
Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 19/128 (14%)
Query: 109 CLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQV-FWYKDG 167
C G S L + + + +G ++I C + YK
Sbjct: 92 CGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQI 151
Query: 168 -----QVIENDG---------VHYRITESNR----LHINQANATDSGEYRCVASNSYTSD 209
VI++ G + I + + + INQ +D+G+Y C A + S+
Sbjct: 152 GLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSN 211
Query: 210 ENAVTIRV 217
+ ++V
Sbjct: 212 KKNADLQV 219
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 44.6 bits (104), Expect = 7e-05
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 21/93 (22%)
Query: 143 VGSDISIPCDVD---GYPIPQVFWYKDG-----QVIENDGVHYRITESNR---------- 184
G+ +SI C + +W + G + + + + R
Sbjct: 14 EGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENG 73
Query: 185 ---LHINQANATDSGEYRCVASNSYTSDENAVT 214
++I Q + DSG Y+C + V+
Sbjct: 74 TFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVS 106
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 5e-08
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK-DGQVIENDGVHYRITESNRL-HINQA---NATDSGE 197
V S+ + C +GYP +V W D QV+ +L ++ N T +
Sbjct: 130 VTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEI 189
Query: 198 YRCVASNSYTSDENAVTIRVEG 219
+ C + + + +
Sbjct: 190 FYCTFRRLDPEENHTAELVIPE 211
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 7e-06
Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 26/121 (21%)
Query: 132 VNITLETQVFGVGSDISIPCDVDGYPIPQ-----VFWYKDGQVI------ENDGVHYRIT 180
V + + V GS+++I C V+W + + I E D +
Sbjct: 4 VTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSS 63
Query: 181 ESNR--------------LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSC 226
R L I D+G YRC+ S +D +T++V + +
Sbjct: 64 YRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQ 122
Query: 227 R 227
R
Sbjct: 123 R 123
|
| >2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A Length = 359 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 7e-08
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 17/82 (20%)
Query: 367 DALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEP------GSSIMPGKV 420
D + E + L+ V +L K DI +A +E GSS MP K
Sbjct: 232 DGIAEFANLLSLVTGTLGKFGQDIALMAE-----------IGSEIRLSGGGGSSAMPHKQ 280
Query: 421 NPTQCEALTMVAAQVMGNHVAV 442
NP E L +A A+
Sbjct: 281 NPVNAETLVTLARFNAVQISAL 302
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 1e-07
Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 2/73 (2%)
Query: 137 ETQVFGVGSDISIPCD-VDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDS 195
G +++ C V+ V W + + RL + DS
Sbjct: 14 GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGR-RLLLRSVQLHDS 72
Query: 196 GEYRCVASNSYTS 208
G Y C +
Sbjct: 73 GNYSCYRAGRPAG 85
|
| >2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Length = 503 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 38/140 (27%), Positives = 55/140 (39%), Gaps = 15/140 (10%)
Query: 371 EVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQCEAL 428
EV L ++ S+ KI DIR LA L E+ P + + GSS MP K NP + E
Sbjct: 272 EVLSVLASLGASVHKICTDIRLLA-----NLKEMEEPFEKQQIGSSAMPYKRNPMRSERC 326
Query: 429 TMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIR----LIADSATAFTDKCVS 484
+A +M + S FE + S R L AD+
Sbjct: 327 CSLARHLMTLVMDPLQTASVQWFERTLDD----SANRRICLAEAFLTADTILNTLQNISE 382
Query: 485 GIVANEENIHRLLHESLMLV 504
G+V + I R + + L +
Sbjct: 383 GLVVYPKVIERRIRQELPFM 402
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 3e-07
Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 15/76 (19%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK-DGQVIENDGVHYRITESNR------------LHINQ 189
G +++ C + W G I + Y + ++++ + +
Sbjct: 15 EGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNE--YPVLKNSKYQLLHHSANQLSITVPN 72
Query: 190 ANATDSGEYRCVASNS 205
D G Y+C+ +
Sbjct: 73 VTLQDEGVYKCLHYSD 88
|
| >1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} Length = 478 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 23/144 (15%)
Query: 371 EVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEP------GSSIMPGKVNPTQ 424
++ +L+ + + K+ DIR L GEL EP GSS MP K NP +
Sbjct: 246 QLVFSLSLLGAAAKKVCTDIRVLQ-----AFGELL----EPFEKDQIGSSAMPYKKNPMK 296
Query: 425 CEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIR----LIADSATAFTD 480
E ++ +++ ++ E + S R + L A++
Sbjct: 297 SERCCALSRKLINAPQEALTILADQGLERTLDD----SAGRRMLIPDVLLTAEALLTTLQ 352
Query: 481 KCVSGIVANEENIHRLLHESLMLV 504
G+ +N+ +++ + + +
Sbjct: 353 NIFEGLSVQTDNVKKIVEDEIAFL 376
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 4e-07
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 18/88 (20%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR--- 184
P+ N+T+ G + C VD + W Q + NR
Sbjct: 10 FPLTQNVTVV-----EGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDK-KALRDNRIEL 63
Query: 185 ---------LHINQANATDSGEYRCVAS 203
+ ++ + +D G+Y C
Sbjct: 64 VRASWHELSISVSDVSLSDEGQYTCSLF 91
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 4e-07
Identities = 11/92 (11%), Positives = 30/92 (32%), Gaps = 15/92 (16%)
Query: 126 YLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRL 185
Y + K I E S+ ++ C+V ++ Y+ + + + +
Sbjct: 103 YEMVSKPMIYWEC------SNATLTCEVLEGTDVELKLYQGKEHLRS---------LRQK 147
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRV 217
++ ++C A N + + +
Sbjct: 148 TMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 179
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 50.3 bits (119), Expect = 5e-07
Identities = 20/169 (11%), Positives = 38/169 (22%), Gaps = 35/169 (20%)
Query: 113 ARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYP---IPQVFWYKDGQV 169
R + V + +V VG + C + + +V W
Sbjct: 103 IRLKNESMVMKKPVELWVLPEEPRDLRVR-VGDTTQMRCSIQSTEEKRVTKVNWMFSSGS 161
Query: 170 IENDGVHYRITESNR--------------------------LHINQANATDSGEYRCVAS 203
+ + R + + +D G Y C
Sbjct: 162 HTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIY 221
Query: 204 NSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKL---IVEGRYCQHHYY 249
+ + V + P K I+ G HH++
Sbjct: 222 VGKLESRKTIVLHV--VQDEFQRTISPTPPTDKGQQGILNGNQHHHHHH 268
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 6e-06
Identities = 15/109 (13%), Positives = 25/109 (22%), Gaps = 25/109 (22%)
Query: 143 VGSDISIPCDV---DGYPIPQVFW---------------YKDGQVIENDGVHYRITESNR 184
VG + + C V + + +V W Y + R
Sbjct: 19 VGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGD 78
Query: 185 -------LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSC 226
L + D G Y C S + + + P
Sbjct: 79 TFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRD 127
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 6e-07
Identities = 7/79 (8%), Positives = 26/79 (32%), Gaps = 9/79 (11%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEY 198
++ S+ ++ C+V ++ Y+ + + + ++ +
Sbjct: 100 MIYWECSNATLTCEVLEGTDVELKLYQGKEHL---------RSLRQKTMSYQWTNLRAPF 150
Query: 199 RCVASNSYTSDENAVTIRV 217
+C A N + + +
Sbjct: 151 KCKAVNRVSQESEMEVVNC 169
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 9e-06
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 16/92 (17%)
Query: 139 QVFG-VGSDISIPCDVDGYPIPQVFWYKDGQVI---ENDGVHYRITESNRLHINQANAT- 193
Q++G V +++ + P+ +V W K + EN + NR++++ + +
Sbjct: 4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62
Query: 194 --------DSGEYRCVASNSYTSDENAVTIRV 217
D EY + N + + + V
Sbjct: 63 TIYNLTSSDEDEYEMESPNITDTMK--FFLYV 92
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 8e-07
Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 8/91 (8%)
Query: 134 ITLETQVFGVGSDISIPC-------DVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH 186
I+ E+ V + S+ + C D + W + I + + I +
Sbjct: 8 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQ-YTIINRTASSV 66
Query: 187 INQANATDSGEYRCVASNSYTSDENAVTIRV 217
A+ + + C ++N I +
Sbjct: 67 TFTDIASLNIQLTCNILTFGQLEQNVYGITI 97
|
| >4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp} Length = 438 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 36/221 (16%), Positives = 67/221 (30%), Gaps = 42/221 (19%)
Query: 364 AAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--ENEPGSSIMPGKVN 421
D + ++ +A ++ ++A +IR L R + E+ + + GSS MP K N
Sbjct: 214 IPRDRIAKLISIHGLIASAIERLAVEIRHLH---RSDVFEVYEGFSKGQKGSSTMPHKKN 270
Query: 422 PTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVF----KPLIVSNVLRSIR----LIAD 473
P E LT +A + + E N + + S+ R I
Sbjct: 271 PISTENLTGMARMLRSHVSIA--------LE-NCVLWHERDISHSSAERFYLPDNFGIMV 321
Query: 474 SATAFTDKCVSGIVANEENIHR--------LLHESLMLVTALNPH-IG----YDKAAKIA 520
A + +V + I L L + Y ++A
Sbjct: 322 YALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHF--LVANTPFMREDCYKIVQQVA 379
Query: 521 KTAHKEGTTLK-----VAALKLGYLTEEEFNKWVVPEDMLG 556
+ + K + L E + + + L
Sbjct: 380 FDLKQGESFSKKLQKVMHDEHNIILDIPEMDFEGIKKTYLK 420
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 1e-06
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVAS 203
G+ + + C +D + W K+GQ + + + + + + DSG Y C
Sbjct: 14 GTSVELTCPLD--SDENLKWEKNGQELPQKHDKHLVLQ------DFSEVEDSGYYVCYTP 65
Query: 204 NSYTSDENAVTIRV 217
S + + RV
Sbjct: 66 ASNKNTYLYLKARV 79
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 3e-04
Identities = 14/124 (11%), Positives = 32/124 (25%), Gaps = 8/124 (6%)
Query: 85 TTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVG 144
T + ++Y + K+ K ++
Sbjct: 63 YTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGD 122
Query: 145 SDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASN 204
+ + C + + W KDG +I N ++ G Y+C +
Sbjct: 123 GSVLLTCGL---TDKTIKWLKDGSIISPLNAT-----KNTWNLGNNAKDPRGTYQCQGAK 174
Query: 205 SYTS 208
++
Sbjct: 175 ETSN 178
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 2e-06
Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 5/80 (6%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIEN-DGVHYRITESNR----LHINQANATDSGE 197
G + C G + + G + + ++T S R ++ D+G+
Sbjct: 178 AGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGK 237
Query: 198 YRCVASNSYTSDENAVTIRV 217
YRC+ + V
Sbjct: 238 YRCMIRTEGGVGISNYAELV 257
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 3e-06
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEY 198
V G +IS+ C P + K+G++ H + + SG Y
Sbjct: 115 LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--HQSGEHPANFSLGPVDLNVSGIY 172
Query: 199 RCVASNSYTSDE-----NAVTIRVEG 219
RC + + NA+ + V
Sbjct: 173 RCYGWYNRSPYLWSFPSNALELVVTD 198
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 1e-04
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 144 GSDISIPCDVD-GYPIPQVFWYKDGQVIENDGVHYRITES-NRLHINQANATDSGEYRCV 201
+ I C + Q+ K+ E E+ I+ +A +G Y+C
Sbjct: 23 DGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQ 82
Query: 202 ASNSYTSDE--NAVTIRVEGIFIHPS 225
+ + + + V G++ P
Sbjct: 83 YRIGHYRFRYSDTLELVVTGLYGKPF 108
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 5e-06
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 15/93 (16%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEND---------GVHYRI 179
++ LE G D D+ I Q W+ +G+ ++++ + YRI
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRI 65
Query: 180 TESNRLH---INQANATDSG-EYRCVASNSYTS 208
+ H ++ DSG S
Sbjct: 66 EQKGLQHRLILHAVKHQDSGALVGFSCPGVQDS 98
|
| >1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663 | Back alignment and structure |
|---|
Score = 47.8 bits (112), Expect = 7e-06
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 145 SDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVA 202
+ C + +VFW V++ + Y + L I + DSG Y+C++
Sbjct: 549 GTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLS 605
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 8e-06
Identities = 12/95 (12%), Positives = 27/95 (28%), Gaps = 4/95 (4%)
Query: 126 YLVPVKVNITLETQVFGVGSDISIPCDVDG-YPIPQ--VFWYKDGQVIENDGVHYRITES 182
Y P +V + VG ++++ C V+G P V + + ++ + E
Sbjct: 83 YWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEV 142
Query: 183 NRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + C +
Sbjct: 143 T-TTVLVRRDHHGANFSCRTELDLRPQGLELFENT 176
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 5e-04
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 4/96 (4%)
Query: 126 YLVPVKVNITLETQVFGVGSDISIPCDVDGYP---IPQVFWYKDGQVIENDGV-HYRITE 181
+++P + +V V + ++ C +DG QV Q +
Sbjct: 185 FVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFS 244
Query: 182 SNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ A + C S E T+ +
Sbjct: 245 AKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 280
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 8e-06
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 9/95 (9%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDS 195
+ G + + C D F +K+G + + +I + I +
Sbjct: 128 PLVKSGERVILQCWSDIMFE-HFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALA 186
Query: 196 GEYRCVASNSYTSDE-----NAVTIRVEGIFIHPS 225
G YRC S ++T + + + I V G + PS
Sbjct: 187 GTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPS 221
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 9e-06
Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 10/105 (9%)
Query: 115 SGYLKETQNGGYLVPVKVNITLETQVFGVGSD-ISIPCDV-DGYPIPQVFWYKDGQVIEN 172
S L + +T +Q+F + + + C V D W G + +
Sbjct: 94 SAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS 153
Query: 173 DGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ ++ R+ +Y C+A N+ ++ +V+ +
Sbjct: 154 QP-NLTVSWDPRIS-------SEQDYTCIAENAVSNLSFSVSAQK 190
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 2e-05
Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 14/129 (10%)
Query: 101 HCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLET-QVFGVGSDISIPCDVDGYPIP 159
C S+ S L+ G Y+ P ++ + V G ++++ CD
Sbjct: 74 RCYYGSDTAGRSESSDPLELVVTGAYIKPT---LSAQPSPVVNSGGNVTLQCDSQVAF-D 129
Query: 160 QVFWYKDGQVIENDGVHYRITESN----RLHINQANATDSGEYRCVASNSYTSDE----- 210
K+G+ ++ + + + + YRC A +S + E
Sbjct: 130 GFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPS 189
Query: 211 NAVTIRVEG 219
+ + + V G
Sbjct: 190 DLLELLVLG 198
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210 | Back alignment and structure |
|---|
Score = 44.9 bits (105), Expect = 2e-05
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDG-YPIPQVFWYKDGQVIENDGVHYRITESNRLHI 187
P++V +G+ + C + V W + G T + L +
Sbjct: 7 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLD---TSLGAVQSDTGRSVLTV 63
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRV 217
A+ + +G CV S + ++ V + V
Sbjct: 64 RNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 3e-05
Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 11/115 (9%)
Query: 113 ARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN 172
S L+ G Y P L + + G +++ C K+
Sbjct: 85 QPSDPLELVMTGAYSKPTL--SALPSPLVTSGKSVTLLCQSRSPM-DTFLLCKERAAHPL 141
Query: 173 ---DGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDE-----NAVTIRVEG 219
H ++ + G YRC +S+ ++ + + + V G
Sbjct: 142 LCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVSG 196
|
| >3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-05
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 15/90 (16%)
Query: 143 VGSDISIPCDV--DGYPIPQVFWYKDGQVI----ENDGVHYRITESNR--------LHIN 188
G I + C + + QV W + Q++ + G H + +R L +
Sbjct: 17 KGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQ 76
Query: 189 QANATDSGEYRC-VASNSYTSDENAVTIRV 217
D+GEY C + + + + V
Sbjct: 77 SLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 106
|
| >1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 5e-05
Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 11/74 (14%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH-------YRITESN----RLHINQAN 191
G + + C V + + W Q G ++ S + I+
Sbjct: 52 AGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVA 111
Query: 192 ATDSGEYRCVASNS 205
D GEY C
Sbjct: 112 LADEGEYTCSIFTM 125
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 5e-05
Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 5/91 (5%)
Query: 144 GSDISIPCDVDG-YPIPQVFWYKD-GQVIENDGVHYRITESNRLHIN---QANATDSGEY 198
I + C G YP PQ+ W + G+ I + +
Sbjct: 133 DGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGV 192
Query: 199 RCVASNSYTSDENAVTIRVEGIFIHPSCRDL 229
C +S E +I + F +
Sbjct: 193 SCTIRSSLLGLEKTASISIADPFFRSAQHHH 223
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 1e-04
Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 25/110 (22%)
Query: 143 VGSDISIPCDVDGYPIPQ--------------VFWYKDGQ-VIENDGVHYR--------- 178
VG D +PC + + V Y DG+ V + YR
Sbjct: 18 VGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDG 77
Query: 179 ITESN-RLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCR 227
IT L I+ A+DSG+Y C + ++ V ++V +
Sbjct: 78 ITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVD 127
|
| >1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 8e-05
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 12/85 (14%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEND-GVHYRITESNRLHI 187
P KV+I+ G+ + + C P ++ W + + I D ++ + L +
Sbjct: 14 PYKVSIS--------GTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSL 63
Query: 188 NQANAT-DSGEYRCVASNSYTSDEN 211
+ + SG Y C S D N
Sbjct: 64 KEFSELEQSGYYVCYPRGSKPEDAN 88
|
| >1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 1e-04
Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 25/108 (23%)
Query: 143 VGSDISIPC------DVDGYPI--------PQVFWYKDGQ-VIENDGVHY--RITESNR- 184
VG + +PC + G + V Y++G+ Y R
Sbjct: 20 VGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKES 79
Query: 185 -------LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
L I +D G Y C + +E AV ++VE F +
Sbjct: 80 IGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWIN 127
|
| >3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 1e-04
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 26/95 (27%)
Query: 132 VNITLETQVFG-VGSDISIPCDV-----DGYPIPQVFWYKDGQVIE------NDGVHYRI 179
V + TQV G +G +++PC + + + Q+ W + G+ G Y
Sbjct: 2 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61
Query: 180 TESNR--------------LHINQANATDSGEYRC 200
++ L + D G Y C
Sbjct: 62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTC 96
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 10/92 (10%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEY 198
G ++ C +D K+G+ + G Y
Sbjct: 111 PEVISGEKVTFYCRLDTAT-SMFLLLKEGRSSHVQ--RGYGKVQAEFPLGPVTTAHRGTY 167
Query: 199 RCVASN-----SYTSDENAVTIRVEGIFIHPS 225
RC S S+ S+ V + V G + S
Sbjct: 168 RCFGSYNNHAWSFPSE--PVKLLVTGDIENTS 197
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 2e-04
Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 22/109 (20%)
Query: 143 VGSDISIPCD----VDGYPIPQVFWYKDGQVI-------ENDGVHYR----ITESNR--L 185
V ++ C V+ +++W K+ +++ N Y+ +N +
Sbjct: 8 VKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSI 67
Query: 186 HINQANATDSGEYRCVASN-----SYTSDENAVTIRVEGIFIHPSCRDL 229
I +D G Y CV VT+ V+ F PS D
Sbjct: 68 VILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF 116
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 3e-04
Identities = 14/123 (11%), Positives = 34/123 (27%), Gaps = 21/123 (17%)
Query: 109 CLFGARSGYLKETQNGGYLVPVKVN-----ITLETQVFGVGSDISIPCDVDG-YPIPQVF 162
C+ + V + V ++ + I C G +P P +
Sbjct: 82 CVVLKYEKD-AFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLS 140
Query: 163 WYKDGQVI---------ENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAV 213
W ++G+ + + + Y ++ N T + + C+ +
Sbjct: 141 WLENGEELNAINTTVSQDPETELYAVSSKLDF-----NMTTNHSFMCLIKYGHLRVNQTF 195
Query: 214 TIR 216
Sbjct: 196 NWN 198
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 2e-04
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 16/99 (16%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHY--------- 177
V + C+ +G P P++ WY++GQ +E
Sbjct: 118 ATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRT 177
Query: 178 ------RITESNRLHINQANATDSGEYRCVASNSYTSDE 210
++ ++ L++ + C A S
Sbjct: 178 VREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGR 216
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 5e-04
Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 24/99 (24%)
Query: 143 VGSDISIPCDVDGYPIP-QVFWYK-------------DGQVIENDGVHYRITESN----- 183
G + + C G + W+ + Q E + +
Sbjct: 14 RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73
Query: 184 ----RLHINQANATDSGEYRC-VASNSYTSDENAVTIRV 217
RL + +A D +Y C V + + + E + V
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV 112
|
| >2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 2e-04
Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 11/94 (11%)
Query: 133 NITLETQVFGVGSDISIPCDVD-----GYPIPQVFWYKDGQVIENDGVHYRITESNR--- 184
+I++ + +G I+ C + P PQ+ W ++ G +
Sbjct: 4 HISVSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQ--PGGRQQRLSDGTQES 61
Query: 185 -LHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + N T + + + + V +R
Sbjct: 62 IITLPHLNHTQAFLSCSLNWGNSLQILDQVELRA 95
|
| >3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306 | Back alignment and structure |
|---|
Score = 42.0 bits (97), Expect = 3e-04
Identities = 14/82 (17%), Positives = 22/82 (26%), Gaps = 9/82 (10%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH 186
L + L+ G + + CD + W D + L
Sbjct: 4 LKKDVYVVELDWYPDAPGEMVVLTCD--TPEEDGITWTLDQSSE-------VLGSGKTLT 54
Query: 187 INQANATDSGEYRCVASNSYTS 208
I D+G+Y C S
Sbjct: 55 IQVKEFGDAGQYTCHKGGEVLS 76
|
| >3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 4e-04
Identities = 14/88 (15%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 122 QNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE 181
+ ++ + + + +V VGSDI+ C + + + + +I DG + I
Sbjct: 191 KQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAIKI 250
Query: 182 SNRLHINQANATDSGEYRCVASNSYTSD 209
N I+ + ++ + N + +
Sbjct: 251 RN---ISVSASSGTNVVFTTEDNIFGTV 275
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 4e-04
Identities = 20/116 (17%), Positives = 34/116 (29%), Gaps = 32/116 (27%)
Query: 143 VGSDISIPCDVDGY-------PIPQVFWYKDGQVIE--------NDGVHYRITESNR--- 184
G + +PC P V+W++DG++ N + R
Sbjct: 14 EGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRL 73
Query: 185 ----------LHINQANATDSGEYRCVASNS----YTSDENAVTIRVEGIFIHPSC 226
L I A D+G Y Y+ +N + + V + P
Sbjct: 74 LGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDI 129
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 4e-04
Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES-NRLHINQANATDSGEYRCVA 202
++I C + Y + + +G + D + + +I N+ +G+Y C+
Sbjct: 18 EKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIY 76
Query: 203 SNSYTSDE--NAVTIRVEGIFIHPS 225
E N + + V ++ P+
Sbjct: 77 RVGELWSEPSNLLDLVVTEMYDTPT 101
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 8e-04
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 10/86 (11%)
Query: 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEY 198
G ++ C +D K+G+ + G Y
Sbjct: 108 PEVISGEKVTFYCRLDTATSM-FLLLKEGRSSHVQ--RGYGKVQAEFPLGPVTTAHRGTY 164
Query: 199 RCVASN-----SYTSDENAVTIRVEG 219
RC S S+ S+ V + V G
Sbjct: 165 RCFGSYNNHAWSFPSE--PVKLLVTG 188
|
| >2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A Length = 465 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 4e-04
Identities = 40/182 (21%), Positives = 68/182 (37%), Gaps = 22/182 (12%)
Query: 363 LAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNP 422
+ HD + E+ L +L+ + DI S L +L + E E GSS MP KVNP
Sbjct: 248 IQDHDYICELCDGLARANGTLIDLCVDIWLYISN---NLLKLKVKEKEVGSSTMPHKVNP 304
Query: 423 TQCEALTMVA--AQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIRL-IADSATAF- 478
E A + + S + + L S VLR+I +A A+
Sbjct: 305 IDFENAEGNLHIANAFFKLFSSKLPTS--RLQ----RDLSDSTVLRNIGSSLAYCLIAYK 358
Query: 479 -TDKCVSGIVANEENIHR-------LLHESLMLV-TALNPHIGYDKAAKIAKTAHKEGTT 529
K ++ I + N+ L E + +V N Y++ + + +
Sbjct: 359 SVLKGLNKIDIDRRNLEEELNQNWSTLAEPIQIVMKRHNYVDAYEELKQFTRGKVIDQKI 418
Query: 530 LK 531
++
Sbjct: 419 MQ 420
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 5e-04
Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 14/115 (12%)
Query: 113 ARSGYLKETQNGGYLVPVKVNITLE-TQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIE 171
S L+ G Y K ++ + V G ++++ C ++G
Sbjct: 85 EPSDPLELVVTGFY---NKPTLSALPSPVVTSGENVTLQCGSRLRFDR-FILTEEGDHKL 140
Query: 172 NDGVHYRITESNR----LHINQANATDSGEYRCVASNSYTSDE-----NAVTIRV 217
+ + ++T S + + + RC S + + + I V
Sbjct: 141 SWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHILQVWSEPSDLLEIPV 195
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 6e-04
Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRC 200
+ + C D +++G+ + + + I +G YRC
Sbjct: 21 EETVILQCWSD-VRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRC 79
Query: 201 VASNSYTSDE-----NAVTIRVEGIFIHPS 225
S +++ + + + I + G++ PS
Sbjct: 80 YGSVTHSPYQLSAPSDPLDIVITGLYEKPS 109
|
| >2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus} Length = 116 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 7e-04
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 23/105 (21%)
Query: 137 ETQVFG-VGSDISIPCDVDG-YPIPQVFWYKDG--------QVIENDGVHYRITESNR-- 184
+V G VG +++PC I W + +I +G +S+R
Sbjct: 4 YVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYN 63
Query: 185 -----------LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
L I + +DSG Y C ++ VT ++
Sbjct: 64 LKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQ 108
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 558 | |||
| 3gtd_A | 482 | Fumarase C, fumarate hydratase class II; structura | 100.0 | |
| 3e04_A | 490 | Fumarase, fumarate hydratase; TCA cycle, structura | 100.0 | |
| 4adm_A | 495 | Fumarase C, fumarate hydratase class II; lyase, tr | 100.0 | |
| 1yfm_A | 488 | Fumarase, YFUM; lyase, krebs cycle, active site wa | 100.0 | |
| 3ocf_A | 478 | Fumarate lyase:delta crystallin; fumarase, brucell | 100.0 | |
| 3r6q_A | 468 | Aspartase; aspartate ammonia lyase, lyase; 2.40A { | 100.0 | |
| 1fur_A | 467 | Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, | 100.0 | |
| 4hgv_A | 495 | Fumarase C, fumarate hydratase class II; nysgrc, P | 100.0 | |
| 1jsw_A | 478 | L-aspartase, L-aspartate ammonia-lyase; amino acid | 100.0 | |
| 1vdk_A | 466 | Fumarase C, fumarate hydratase class II; TCA cycle | 100.0 | |
| 2pfm_A | 444 | Adenylosuccinate lyase; PURB, purine biosynthesis, | 100.0 | |
| 1q5n_A | 454 | 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a | 100.0 | |
| 1c3c_A | 429 | Protein (adenylosuccinate lyase); purine biosynthe | 100.0 | |
| 1re5_A | 450 | 3-carboxy-CIS,CIS-muconate cycloisomerase; homotet | 100.0 | |
| 3c8t_A | 451 | Fumarate lyase; structural genomics, PSI-2, protei | 100.0 | |
| 2j91_A | 503 | Adenylosuccinate lyase; disease mutation, adenylos | 100.0 | |
| 1dof_A | 403 | Adenylosuccinate lyase; purine biosynthesis; 2.10A | 100.0 | |
| 1yis_A | 478 | Adenylosuccinate lyase; structural genomics, PSI, | 100.0 | |
| 4eei_A | 438 | Adenylosuccinate lyase; structural genomics, niaid | 100.0 | |
| 2e9f_A | 462 | Argininosuccinate lyase; alpha helix bundle; HET: | 100.0 | |
| 2ptr_A | 462 | Adenylosuccinate lyase; mutant-substrate complex; | 100.0 | |
| 1tj7_A | 457 | Argininosuccinate lyase; crystallin, E. coli, fuma | 100.0 | |
| 1k7w_A | 468 | Delta 2 crystallin; eye lens protein, argininosucc | 100.0 | |
| 2qga_B | 465 | Adenylosuccinate lyase; malaria, PV003765, SGC, st | 100.0 | |
| 3bhg_A | 459 | Adenylosuccinate lyase; structural G PSI-2, protei | 100.0 | |
| 2fel_A | 359 | 3-carboxy-CIS,CIS-muconate lactonizing enzyme; bio | 100.0 | |
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 99.94 | |
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 99.92 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 99.92 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 99.92 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 99.92 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 99.91 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 99.91 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 99.9 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 99.9 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 99.9 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 99.89 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 99.89 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 99.89 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 99.89 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 99.89 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 99.89 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 99.89 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 99.88 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 99.88 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 99.88 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 99.88 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 99.88 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 99.88 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 99.87 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 99.87 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.87 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 99.87 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 99.87 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 99.87 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 99.87 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 99.87 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 99.87 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 99.87 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.86 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 99.86 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 99.86 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 99.86 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 99.86 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 99.86 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 99.85 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 99.85 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 99.84 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 99.84 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 99.83 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 99.83 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 99.82 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 99.82 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 99.81 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 99.81 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 99.8 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 99.8 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 99.79 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 99.78 | |
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 99.78 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 99.78 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 99.77 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 99.77 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 99.76 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.76 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 99.76 | |
| 1epf_A | 191 | NCAM, protein (neural cell adhesion molecule); imm | 99.75 | |
| 2v5t_A | 189 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; p | 99.75 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 99.75 | |
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.75 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 99.75 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 99.74 | |
| 3r4d_A | 208 | CEA-related cell adhesion molecule 1, isoform 1/2; | 99.74 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 99.74 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 99.73 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 99.73 | |
| 3knb_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, AT | 99.73 | |
| 3s97_C | 201 | Contactin-1; carbonic anhdyrase like immunoglobuli | 99.73 | |
| 3ojm_B | 231 | Fibroblast growth factor receptor 2; beta trefoil | 99.73 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 99.73 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 99.73 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.72 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 99.72 | |
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 99.72 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 99.71 | |
| 2c5d_C | 195 | AXL oncogene, tyrosine-protein kinase receptor UFO | 99.71 | |
| 1f97_A | 212 | Junction adhesion molecule; immunoglobulin superfa | 99.71 | |
| 2fbo_J | 250 | V1V2;, variable region-containing chitin-binding p | 99.7 | |
| 3knb_A | 100 | Titin; IG-like, titin, OBSL1, ATP-binding, calmodu | 99.7 | |
| 2x1w_L | 213 | Vascular endothelial growth factor receptor 2; hor | 99.7 | |
| 2vr9_A | 217 | Roundabout 1, ROBO; immunoglobulin-like domain, AX | 99.7 | |
| 2v9r_A | 212 | Roundabout homolog 1; proto-oncogene, differentiat | 99.69 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 99.69 | |
| 1rhf_A | 182 | Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 | 99.69 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 99.69 | |
| 3k0w_A | 218 | Mucosa-associated lymphoid tissue lymphoma translo | 99.68 | |
| 1hng_A | 176 | CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra | 99.68 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.68 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 99.68 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 99.67 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 99.67 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.67 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 99.67 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 99.66 | |
| 1nbq_A | 209 | JAM, junctional adhesion molecule 1, PAM-1; reovir | 99.66 | |
| 1ugn_A | 198 | LIR1, leukocyte immunoglobulin-like receptor 1; im | 99.66 | |
| 3bp6_B | 202 | Programmed cell death 1 ligand 2; PD-1, PD-L2, com | 99.66 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.66 | |
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 99.65 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 99.65 | |
| 2cqv_A | 114 | MLCK, myosin light chain kinase, smooth muscle and | 99.65 | |
| 3p2t_A | 196 | Leukocyte immunoglobulin-like receptor subfamily 4 | 99.65 | |
| 2edj_A | 100 | Roundabout homolog 2; KIAA1568 protein, beta sandw | 99.65 | |
| 4f80_A | 226 | Butyrophilin subfamily 3 member A1; B7 superfamily | 99.65 | |
| 3sgj_C | 204 | Human FCG3A receptor; receptor complex, FC recepto | 99.64 | |
| 2d3v_A | 196 | Leukocyte immunoglobulin-like receptor subfamily A | 99.64 | |
| 1u2h_A | 99 | APEG-1, aortic preferentially expressed protein 1; | 99.64 | |
| 1uct_A | 218 | Immunoglobulin alpha FC receptor; beta stands, imm | 99.64 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 99.64 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 99.63 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 99.63 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 99.63 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 99.63 | |
| 1dr9_A | 201 | B7-1 (CD80), T lymphocyte activation antigen; IG s | 99.63 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 99.62 | |
| 2c1o_A | 254 | IGK-C protein; FAB fragment, enantioselective, fin | 99.62 | |
| 1fnl_A | 175 | Low affinity immunoglobulin gamma FC region recept | 99.62 | |
| 1oll_A | 188 | NK receptor; immune system/receptor, NK cell trigg | 99.62 | |
| 2kkq_A | 116 | Myotilin; unknown function, actin-binding, cell me | 99.62 | |
| 3sbw_C | 222 | Programmed cell death 1 ligand 1; PD-1, PD-L1, B7- | 99.62 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 99.62 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 99.62 | |
| 1g1c_A | 99 | Immunoglobulin-like domain I1 from titin; immunogl | 99.61 | |
| 4i0k_A | 222 | CD276 antigen; immunoglobulin domain, glycoprotein | 99.61 | |
| 3irg_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, co | 99.61 | |
| 1wit_A | 93 | Twitchin 18TH IGSF module; immunoglobulin superfam | 99.61 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.61 | |
| 1vca_A | 202 | VCAM-D1,2, human vascular cell adhesion molecule-1 | 99.61 | |
| 3qp3_A | 103 | Titin; I-SET IG-like, sarcomere, M-BAND, transfera | 99.61 | |
| 2gi7_A | 184 | GPVI protein; IG-like domains, blood clotting, cel | 99.61 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.6 | |
| 2eo9_A | 118 | Roundabout homolog 1; beta-sandwich, IG-fold, H-RO | 99.6 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 99.6 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 99.6 | |
| 2pet_A | 231 | Lutheran blood group glycoprotein; immunoglobulin | 99.6 | |
| 1jbj_A | 186 | CD3 epsilon and gamma ectodomain fragment complex; | 99.6 | |
| 4frw_A | 218 | Poliovirus receptor-related protein 4; immunoglobu | 99.59 | |
| 3kvq_A | 108 | Vascular endothelial growth factor receptor 2; veg | 99.59 | |
| 3puc_A | 99 | Titin; I-SET IG-like domain, M-BAND, transferase; | 99.59 | |
| 2kdg_A | 100 | Myotilin; immonoglobulin domain, actin-binding, st | 99.59 | |
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.59 | |
| 3mj8_L | 213 | Stimulatory hamster antibody HL4E10 FAB light CHA; | 99.59 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 99.59 | |
| 2if7_A | 193 | SLAM family member 6; NTB-A, homophilic receptor, | 99.59 | |
| 2yr3_A | 99 | Myosin light chain kinase, smooth muscle; IG domai | 99.59 | |
| 2dm2_A | 110 | Palladin; beta-sandwich, KIAA0992, actin-associate | 99.59 | |
| 1f2q_A | 176 | High affinity immunoglobulin epsilon receptor ALP | 99.58 | |
| 1hnf_A | 182 | CD2; T lymphocyte adhesion glycoprotein; HET: NAG; | 99.58 | |
| 2dm3_A | 110 | KIAA0992 protein, palladin; beta-sandwich, myopall | 99.57 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.56 | |
| 2ghw_B | 247 | Anti-SARS SCFV antibody, 80R; S protein, neutraliz | 99.56 | |
| 3irg_A | 100 | Titin; IG-like, titin, OBSL1, complex, alternative | 99.56 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.56 | |
| 2e7c_A | 118 | Myosin-binding protein C, fast-type; IG-like domai | 99.55 | |
| 1fhg_A | 154 | Telokin; immunoglobulin fold, beta barrel, contrac | 99.55 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 99.55 | |
| 2ckn_A | 95 | Basic fibroblast growth factor receptor 1; kinase, | 99.55 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.55 | |
| 3d9a_L | 213 | Light chain of hyhel10 antibody fragment (FAB); ly | 99.54 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 99.54 | |
| 2zg1_A | 214 | Sialic acid-binding IG-like lectin 5; siglec-5 inh | 99.54 | |
| 1p6f_A | 242 | NKP46, natural cytotoxicity triggering receptor 1; | 99.54 | |
| 2yuz_A | 100 | Myosin-binding protein C, SLOW-type; immunoglobuli | 99.54 | |
| 1f3r_B | 257 | FV antibody fragment; IG-fold, immuno complex, ant | 99.54 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.54 | |
| 3ry4_A | 170 | Low affinity immunoglobulin gamma FC region recep; | 99.53 | |
| 2bk8_A | 97 | Connectin, M1, titin heart isoform N2-B; IG domain | 99.53 | |
| 2dru_A | 180 | Chimera of CD48 antigen and T-cell surface antige; | 99.53 | |
| 1ccz_A | 171 | Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8 | 99.53 | |
| 1q0x_L | 212 | FAB 9B1, light chain; anti-morphine antibody, FAB | 99.53 | |
| 1epf_A | 191 | NCAM, protein (neural cell adhesion molecule); imm | 99.53 | |
| 1waa_A | 93 | Titin; metal binding protein, calmodulin-binding, | 99.52 | |
| 1gxe_A | 139 | Myosin binding protein C, cardiac-type; cytoskelet | 99.52 | |
| 1lk3_L | 210 | 9D7 light chain; antigen-antibody complex, immune | 99.52 | |
| 3nl4_L | 213 | Antigen binding fragment, immunoglobulin IGG - LI; | 99.52 | |
| 1wwb_X | 103 | Protein (brain derived neurotrophic factor recepto | 99.52 | |
| 3pv7_A | 248 | B7-H6, IG-like domain-containing protein DKFZP686O | 99.52 | |
| 1nct_A | 106 | Titin; cell adhesion, glycoprotein, transmembrane, | 99.52 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 99.52 | |
| 2dav_A | 126 | SLOW MYBP-C, myosin-binding protein C, SLOW-type; | 99.52 | |
| 1qok_A | 282 | MFE-23 recombinant antibody fragment; immunoglobul | 99.51 | |
| 2xzc_L | 216 | FAB A.17 light chain; immune system; HET: XOP; 1.3 | 99.51 | |
| 1q9r_B | 222 | S25-2 FAB (IGG1K) heavy chain; antigen-binding fra | 99.51 | |
| 1nqb_A | 256 | Single-chain antibody fragment; multivalent antibo | 99.51 | |
| 3tv3_L | 211 | PGT128 light chain, IG lambda-2 chain C regions; F | 99.51 | |
| 3caf_A | 100 | Fibroblast growth factor receptor 2; FGFR2, D2, AT | 99.5 | |
| 1c1e_H | 219 | Catalytic antibody 1E9 (heavy chain); diels-alder, | 99.5 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 99.5 | |
| 1nkr_A | 201 | P58-CL42 KIR; inhibitory receptor, natural killer | 99.5 | |
| 1he7_A | 126 | High affinity nerve growth factor receptor; transf | 99.5 | |
| 3ojm_B | 231 | Fibroblast growth factor receptor 2; beta trefoil | 99.5 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 99.5 | |
| 3s96_B | 218 | 3B5H10 FAB light chain; huntingtin, immune system; | 99.5 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 99.5 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 99.5 | |
| 2p1y_A | 238 | Bispecific alpha/beta TCR; autoimmunity, immunoglo | 99.5 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 99.5 | |
| 2c5d_C | 195 | AXL oncogene, tyrosine-protein kinase receptor UFO | 99.49 | |
| 1b6u_A | 257 | KIR2DL3, P58 killer cell inhibitory receptor; natu | 99.49 | |
| 3uzq_A | 253 | Anti-dengue MAB 4E11; dengue antibody neutralizati | 99.49 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 99.49 | |
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 99.49 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 99.49 | |
| 2lu7_A | 84 | Obscurin-like protein 1; structural genomics, nort | 99.49 | |
| 3cx2_A | 108 | Myosin-binding protein C, cardiac-type; protonatio | 99.48 | |
| 1nfd_E | 212 | H57 FAB; complex (immunoreceptor-immunoglobulin), | 99.48 | |
| 3bfo_A | 91 | Mucosa-associated lymphoid tissue lymphoma translo | 99.48 | |
| 3sob_L | 237 | Antibody light chain; beta propeller, protein bind | 99.48 | |
| 3r06_A | 213 | Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; | 99.48 | |
| 4fmk_A | 225 | Poliovirus receptor-related protein 2; immunoglobu | 99.47 | |
| 3umt_A | 256 | SCFV heavy chain and light chain; stability engine | 99.47 | |
| 1mju_H | 227 | Immunoglobulin MS6-12; catalytic antibody, ester h | 99.47 | |
| 3auv_A | 276 | SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid | 99.47 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 99.47 | |
| 2cr3_A | 99 | Basic fibroblast growth factor receptor 1; IG fold | 99.47 | |
| 3bp6_B | 202 | Programmed cell death 1 ligand 2; PD-1, PD-L2, com | 99.47 | |
| 3juy_B | 256 | 3B3 single chain variant HIV-1 antibody; envelope | 99.46 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 99.46 | |
| 1x44_A | 103 | Myosin-binding protein C, SLOW-type; IG-like domai | 99.46 | |
| 1pz5_B | 220 | Heavy chain of FAB (SYA/J6); antibody-antigen stru | 99.46 | |
| 1sy6_A | 204 | T-cell surface glycoprotein CD3 gamma/epsilon chai | 99.46 | |
| 1hng_A | 176 | CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra | 99.46 | |
| 1rhf_A | 182 | Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 | 99.46 | |
| 1f97_A | 212 | Junction adhesion molecule; immunoglobulin superfa | 99.46 | |
| 2edn_A | 118 | Myosin-binding protein C, fast-type; beta-sandwich | 99.46 | |
| 2edf_A | 103 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.46 | |
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 99.45 | |
| 2fbj_H | 220 | IGA-kappa J539 FAB (heavy chain); immunoglobulin; | 99.45 | |
| 3d9a_H | 210 | Heavy chain of hyhel10 antibody fragment (FAB); ly | 99.45 | |
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 99.45 | |
| 3k0w_A | 218 | Mucosa-associated lymphoid tissue lymphoma translo | 99.44 | |
| 2v5t_A | 189 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; p | 99.44 | |
| 1dee_B | 223 | IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin | 99.44 | |
| 3bkj_L | 252 | WO2 IGG2A FAB fragment light chain kappa; abeta, F | 99.44 | |
| 2v9t_A | 117 | Roundabout homolog 1; structural protein-receptor | 99.44 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.44 | |
| 3gkz_A | 257 | Anti-methamphetamine single chain FV; therapeutic | 99.44 | |
| 2j6e_L | 234 | IGM, FAB light chain; autoimmune complex human IGM | 99.43 | |
| 3esu_F | 250 | Antibody 14B7* light chain and antibody 14B7* heav | 99.43 | |
| 1gl4_B | 98 | Basement membrane-specific heparan sulfate proteog | 99.43 | |
| 3eow_R | 221 | Poliovirus receptor; immunoglobulin super family, | 99.42 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 99.42 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 99.42 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 99.42 | |
| 2e6p_A | 104 | Obscurin-like protein 1; IG-like domain, structura | 99.42 | |
| 1vca_A | 202 | VCAM-D1,2, human vascular cell adhesion molecule-1 | 99.42 | |
| 2v9r_A | 212 | Roundabout homolog 1; proto-oncogene, differentiat | 99.42 | |
| 2lvc_A | 91 | Obscurin-like protein 1; structural genomics, nort | 99.42 | |
| 1moe_A | 240 | Anti-CEA MAB T84.66; anti carcinoembryonic antigen | 99.42 | |
| 2cry_A | 122 | KIN of IRRE-like protein 3; IG fold, KIN of irregu | 99.41 | |
| 2dlt_A | 106 | Myosin binding protein C, fast-type; IG-like domai | 99.41 | |
| 3nl4_H | 215 | Antigen binding fragment,immunoglobulin IGG - HEA; | 99.41 | |
| 4hwu_A | 95 | Fibroblast growth factor receptor 2; FGFR2, KGFR, | 99.41 | |
| 2znx_A | 242 | SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s | 99.4 | |
| 2eny_A | 104 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.4 | |
| 2dku_A | 103 | KIAA1556 protein; beta-sandwich, IG-fold, obscurin | 99.4 | |
| 3m45_A | 108 | Cell adhesion molecule 2; IG fold, dimer, disulfid | 99.4 | |
| 3tf7_C | 256 | 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; | 99.4 | |
| 1dn0_B | 232 | IGM-kappa cold agglutinin (heavy chain); FAB, anti | 99.4 | |
| 1op3_H | 225 | FAB 2G12, heavy chain; domain-swapped FAB 2G12, an | 99.39 | |
| 1wwc_A | 118 | Protein (NT-3 growth factor receptor TRKC); TRK re | 99.39 | |
| 1nbq_A | 209 | JAM, junctional adhesion molecule 1, PAM-1; reovir | 99.39 | |
| 2edh_A | 113 | Obscurin; structural genomics, NPPSFA, national pr | 99.39 | |
| 2vr9_A | 217 | Roundabout 1, ROBO; immunoglobulin-like domain, AX | 99.39 | |
| 1svz_A | 247 | Immunoglobulin;, single-chain FV fragment 1696; an | 99.38 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 99.38 | |
| 3bae_H | 228 | WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO | 99.38 | |
| 3ux9_B | 256 | SCFV antibody; five helices, long loop connecting | 99.38 | |
| 2gi7_A | 184 | GPVI protein; IG-like domains, blood clotting, cel | 99.38 | |
| 2yuv_A | 100 | Myosin-binding protein C, SLOW-type; SLOW-type myo | 99.37 | |
| 2ens_A | 96 | Advanced glycosylation END product-specific recept | 99.37 | |
| 1uct_A | 218 | Immunoglobulin alpha FC receptor; beta stands, imm | 99.37 | |
| 2d3v_A | 196 | Leukocyte immunoglobulin-like receptor subfamily A | 99.36 | |
| 2edk_A | 101 | Myosin-binding protein C, fast-type; IG fold, fast | 99.36 | |
| 1pd6_A | 104 | Cardiac MYBP-C;, myosin-binding protein C, cardiac | 99.36 | |
| 3p2t_A | 196 | Leukocyte immunoglobulin-like receptor subfamily 4 | 99.36 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 99.36 | |
| 3mtr_A | 215 | N-CAM-1, NCAM-1, neural cell adhesion molecule 1; | 99.36 | |
| 3qr2_A | 137 | Basigin; CD147, EMMPRIN, immunoglobulin-like domai | 99.35 | |
| 3s97_C | 201 | Contactin-1; carbonic anhdyrase like immunoglobuli | 99.35 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.35 | |
| 3bqu_C | 233 | 3H6 FAB light chain; beta sheet, immune system; 3. | 99.35 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 99.35 | |
| 2k1m_A | 95 | Myosin-binding protein C, cardiac-type; IG-I domai | 99.35 | |
| 3so5_A | 112 | LIG-3, leucine-rich repeats and immunoglobulin-lik | 99.35 | |
| 2e6q_A | 112 | Obscurin-like protein 1; IG-like domain, structura | 99.35 | |
| 3s35_X | 122 | Vascular endothelial growth factor receptor 2; ant | 99.35 | |
| 3liz_H | 253 | 4C3 monoclonal antibody heavy chain; hydrolase-imm | 99.35 | |
| 1ugn_A | 198 | LIR1, leukocyte immunoglobulin-like receptor 1; im | 99.35 | |
| 1gsm_A | 210 | Madcam-1, mucosal addressin cell adhesion molecule | 99.35 | |
| 2fbo_J | 250 | V1V2;, variable region-containing chitin-binding p | 99.35 | |
| 2gki_A | 291 | Nuclease; anti-DNA antibody, catalytic antibody, i | 99.34 | |
| 2e7b_A | 103 | Obscurin; IG-like domain, structural genomics, NPP | 99.34 | |
| 3rbg_A | 124 | Cytotoxic and regulatory T-cell molecule; IGV, crt | 99.34 | |
| 2v5y_A | 731 | Receptor-type tyrosine-protein phosphatase MU; mem | 99.34 | |
| 2gjj_A | 264 | A21 single-chain antibody fragment against ERBB2; | 99.33 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 99.33 | |
| 3m8o_H | 221 | Immunoglobulin A1 heavy chain; immunoglobulin fold | 99.33 | |
| 3fku_X | 280 | Neutralizing antibody F10; influenza, hemagglutini | 99.33 | |
| 1x9q_A | 268 | SCFV, 4M5.3 anti-fluorescein single chain antibody | 99.32 | |
| 2cr6_A | 115 | KIAA1556 protein, obscurin; IG-fold, immunoglobuli | 99.32 | |
| 3nl4_L | 213 | Antigen binding fragment, immunoglobulin IGG - LI; | 99.32 | |
| 3r4d_A | 208 | CEA-related cell adhesion molecule 1, isoform 1/2; | 99.32 | |
| 4dzb_B | 246 | Vbeta2 (MAIT T cell receptor); immune system; 1.70 | 99.31 | |
| 1hnf_A | 182 | CD2; T lymphocyte adhesion glycoprotein; HET: NAG; | 99.31 | |
| 3omz_A | 259 | Human vdelta1 gamma delta T cell receptor delta1A; | 99.31 | |
| 3pl6_D | 268 | MBP peptide / T-cell receptor beta chain chimera; | 99.31 | |
| 1oll_A | 188 | NK receptor; immune system/receptor, NK cell trigg | 99.3 | |
| 1fnl_A | 175 | Low affinity immunoglobulin gamma FC region recept | 99.3 | |
| 2cpc_A | 113 | KIAA0657 protein; immunoglobulin domain, IG domain | 99.3 | |
| 2if7_A | 193 | SLAM family member 6; NTB-A, homophilic receptor, | 99.3 | |
| 3o3u_N | 581 | Maltose-binding periplasmic protein, advanced Gly | 99.29 | |
| 1ccz_A | 171 | Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8 | 99.29 | |
| 4ei6_B | 245 | Vbeta16 XV19 type II natural killer T cell recept | 99.28 | |
| 3bn9_D | 257 | E2 FAB heavy chain; antibody-protease complex, pro | 99.28 | |
| 1jbj_A | 186 | CD3 epsilon and gamma ectodomain fragment complex; | 99.28 | |
| 1dr9_A | 201 | B7-1 (CD80), T lymphocyte activation antigen; IG s | 99.27 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.27 | |
| 3sgj_C | 204 | Human FCG3A receptor; receptor complex, FC recepto | 99.27 | |
| 1c5d_H | 215 | Monoclonal antibody against the main immunogenic t | 99.27 | |
| 2dm7_A | 108 | KIAA1556 protein; beta-sandwich, IG-fold, obscurin | 99.27 | |
| 3qib_D | 270 | 2B4 beta chain; IG domain, immune system; HET: NAG | 99.27 | |
| 2pet_A | 231 | Lutheran blood group glycoprotein; immunoglobulin | 99.27 | |
| 2xqy_G | 261 | A13-D6.3 monoclonal antibody, envelope glycoprotei | 99.27 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.26 | |
| 3q5y_A | 240 | TCR N15 beta; IG, T cell receptor, antigen peptide | 99.26 | |
| 1hxm_B | 242 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.26 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.25 | |
| 3nfj_J | 245 | T cell receptor beta chain; immunoglobulin family, | 99.25 | |
| 1z9m_A | 145 | GAPA225; nectin-like, IG-like domain, V domain, ce | 99.25 | |
| 1gsm_A | 210 | Madcam-1, mucosal addressin cell adhesion molecule | 99.24 | |
| 3mj8_L | 213 | Stimulatory hamster antibody HL4E10 FAB light CHA; | 99.24 | |
| 2c1o_A | 254 | IGK-C protein; FAB fragment, enantioselective, fin | 99.24 | |
| 2vol_A | 207 | Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, | 99.24 | |
| 3sbw_C | 222 | Programmed cell death 1 ligand 1; PD-1, PD-L1, B7- | 99.24 | |
| 3qhz_H | 232 | Human monoclonal antibody DEL2D1, FAB heavy chain; | 99.23 | |
| 1mq8_A | 291 | ICAM-1, intercellular adhesion molecule-1, CD54 an | 99.23 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.23 | |
| 1f2q_A | 176 | High affinity immunoglobulin epsilon receptor ALP | 99.22 | |
| 4f80_A | 226 | Butyrophilin subfamily 3 member A1; B7 superfamily | 99.22 | |
| 3r06_A | 213 | Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; | 99.22 | |
| 2eo1_A | 102 | OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024 | 99.22 | |
| 3d9a_L | 213 | Light chain of hyhel10 antibody fragment (FAB); ly | 99.22 | |
| 2wbj_D | 279 | OB TCR; transmembrane, immune response, T cell rec | 99.21 | |
| 1nkr_A | 201 | P58-CL42 KIR; inhibitory receptor, natural killer | 99.2 | |
| 2zg1_A | 214 | Sialic acid-binding IG-like lectin 5; siglec-5 inh | 99.19 | |
| 2rgs_A | 218 | I, IG gamma-2B heavy chain; FC-fragment, immunoglo | 99.19 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 99.19 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.19 | |
| 3sob_L | 237 | Antibody light chain; beta propeller, protein bind | 99.18 | |
| 1lk3_L | 210 | 9D7 light chain; antigen-antibody complex, immune | 99.18 | |
| 3s96_B | 218 | 3B5H10 FAB light chain; huntingtin, immune system; | 99.18 | |
| 3tv3_H | 239 | PGT128 heavy chain, IG gamma-1 chain C region; FAB | 99.18 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.18 | |
| 3ry4_A | 170 | Low affinity immunoglobulin gamma FC region recep; | 99.17 | |
| 2qsq_A | 111 | Carcinoembryonic antigen-related cell adhesion MO; | 99.17 | |
| 1oga_E | 252 | TRBC1, T-cell receptor beta chain C region; immune | 99.16 | |
| 3to4_D | 253 | NKT vbeta2 (mouse variable domain, human constant; | 99.16 | |
| 2x1w_L | 213 | Vascular endothelial growth factor receptor 2; hor | 99.15 | |
| 1bec_A | 238 | 14.3.D T cell antigen receptor; T cell receptor; 1 | 99.15 | |
| 2dru_A | 180 | Chimera of CD48 antigen and T-cell surface antige; | 99.15 | |
| 1moe_A | 240 | Anti-CEA MAB T84.66; anti carcinoembryonic antigen | 99.14 | |
| 4dzb_B | 246 | Vbeta2 (MAIT T cell receptor); immune system; 1.70 | 99.14 | |
| 1f3r_B | 257 | FV antibody fragment; IG-fold, immuno complex, ant | 99.13 | |
| 4acp_A | 240 | IG gamma-1 chain C region; immune system, antibody | 99.13 | |
| 3pv7_A | 248 | B7-H6, IG-like domain-containing protein DKFZP686O | 99.13 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 99.13 | |
| 1c1e_H | 219 | Catalytic antibody 1E9 (heavy chain); diels-alder, | 99.13 | |
| 2ghw_B | 247 | Anti-SARS SCFV antibody, 80R; S protein, neutraliz | 99.12 | |
| 3o3u_N | 581 | Maltose-binding periplasmic protein, advanced Gly | 99.12 | |
| 3n9g_H | 230 | FAB fragment of MAB CR4354, heavy chain; human neu | 99.12 | |
| 3u2s_H | 248 | PG9 heavy chain; greek KEY, immunoglobulin, immune | 99.12 | |
| 3bkj_L | 252 | WO2 IGG2A FAB fragment light chain kappa; abeta, F | 99.11 | |
| 1p6f_A | 242 | NKP46, natural cytotoxicity triggering receptor 1; | 99.1 | |
| 3q0h_A | 117 | T cell immunoreceptor with IG and ITIM domains; im | 99.1 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 99.1 | |
| 4frw_A | 218 | Poliovirus receptor-related protein 4; immunoglobu | 99.1 | |
| 3r08_E | 82 | T-cell surface glycoprotein CD3 epsilon chain; ant | 99.09 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 99.09 | |
| 3esu_F | 250 | Antibody 14B7* light chain and antibody 14B7* heav | 99.09 | |
| 1q0x_L | 212 | FAB 9B1, light chain; anti-morphine antibody, FAB | 99.08 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.08 | |
| 3auv_A | 276 | SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid | 99.08 | |
| 3sob_H | 256 | Antibody heavy chain, low-density lipoprotein rece | 99.07 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 99.07 | |
| 2znx_A | 242 | SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s | 99.07 | |
| 1eaj_A | 126 | Coxsackie virus and adenovirus receptor; virus/vir | 99.06 | |
| 3tv3_L | 211 | PGT128 light chain, IG lambda-2 chain C regions; F | 99.05 | |
| 1pko_A | 139 | Myelin oligodendrocyte glycoprotein; IGV-domain, i | 99.05 | |
| 1sy6_A | 204 | T-cell surface glycoprotein CD3 gamma/epsilon chai | 99.05 | |
| 3tf7_C | 256 | 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; | 99.05 | |
| 2rgs_A | 218 | I, IG gamma-2B heavy chain; FC-fragment, immunoglo | 99.05 | |
| 2xzc_L | 216 | FAB A.17 light chain; immune system; HET: XOP; 1.3 | 99.04 | |
| 3omz_A | 259 | Human vdelta1 gamma delta T cell receptor delta1A; | 99.04 | |
| 2p1y_A | 238 | Bispecific alpha/beta TCR; autoimmunity, immunoglo | 99.04 | |
| 4fmk_A | 225 | Poliovirus receptor-related protein 2; immunoglobu | 99.04 | |
| 1qok_A | 282 | MFE-23 recombinant antibody fragment; immunoglobul | 99.03 | |
| 2w59_A | 231 | IGY FCU3-4; immunoglobulin, avian, immune system; | 99.03 | |
| 4i0k_A | 222 | CD276 antigen; immunoglobulin domain, glycoprotein | 99.03 | |
| 3udw_C | 118 | Poliovirus receptor; PVR tigit IGSF signal transdu | 99.03 | |
| 3d9a_H | 210 | Heavy chain of hyhel10 antibody fragment (FAB); ly | 99.03 | |
| 3bqu_C | 233 | 3H6 FAB light chain; beta sheet, immune system; 3. | 99.03 | |
| 3nfj_J | 245 | T cell receptor beta chain; immunoglobulin family, | 99.03 | |
| 3juy_B | 256 | 3B3 single chain variant HIV-1 antibody; envelope | 99.02 | |
| 1nfd_E | 212 | H57 FAB; complex (immunoreceptor-immunoglobulin), | 99.02 | |
| 2vol_A | 207 | Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, | 99.02 | |
| 1ypz_E | 207 | T cell receptor delta, beta-2-microglobulin; H2-T2 | 99.02 | |
| 1b6u_A | 257 | KIR2DL3, P58 killer cell inhibitory receptor; natu | 99.02 | |
| 3pl6_D | 268 | MBP peptide / T-cell receptor beta chain chimera; | 99.02 | |
| 1op3_H | 225 | FAB 2G12, heavy chain; domain-swapped FAB 2G12, an | 99.01 | |
| 1xau_A | 122 | B- and T-lymphocyte attenuator; IG domain, beta sa | 99.0 | |
| 3gkz_A | 257 | Anti-methamphetamine single chain FV; therapeutic | 99.0 | |
| 4ei6_B | 245 | Vbeta16 XV19 type II natural killer T cell recept | 99.0 | |
| 3eow_R | 221 | Poliovirus receptor; immunoglobulin super family, | 99.0 | |
| 3khq_A | 133 | B-cell antigen receptor complex-associated protei | 99.0 | |
| 4hwn_A | 108 | FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG | 99.0 | |
| 1q9r_B | 222 | S25-2 FAB (IGG1K) heavy chain; antigen-binding fra | 98.99 | |
| 1l6x_A | 207 | Immunoglobulin gamma-1 heavy chain constant regio; | 98.99 | |
| 3uzq_A | 253 | Anti-dengue MAB 4E11; dengue antibody neutralizati | 98.98 | |
| 1ypz_F | 230 | T-cell receptor gamma chain, beta-2-microglobulin; | 98.97 | |
| 1jhl_L | 108 | IGG1-kappa D11.15 FV (light chain); complex(antibo | 98.97 | |
| 3mlr_H | 226 | Human monoclonal anti-HIV-1 GP120 V3 antibody 255 | 98.97 | |
| 1svz_A | 247 | Immunoglobulin;, single-chain FV fragment 1696; an | 98.97 | |
| 2j6e_L | 234 | IGM, FAB light chain; autoimmune complex human IGM | 98.96 | |
| 1iam_A | 185 | ICAM-1, CD54, intercellular adhesion molecule-1; r | 98.96 | |
| 3iu4_H | 263 | CHP3 FAB heavy chain; antibody, ganglioside, idiot | 98.95 | |
| 1nqb_A | 256 | Single-chain antibody fragment; multivalent antibo | 98.95 | |
| 3f8u_B | 401 | Tapasin; endoplasmic reticulum, glycoprotein, immu | 98.95 | |
| 3umt_A | 256 | SCFV heavy chain and light chain; stability engine | 98.94 | |
| 1pz5_B | 220 | Heavy chain of FAB (SYA/J6); antibody-antigen stru | 98.94 | |
| 3bae_H | 228 | WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO | 98.94 | |
| 4gos_A | 125 | V-SET domain-containing T-cell activation inhibit; | 98.93 | |
| 3ux9_B | 256 | SCFV antibody; five helices, long loop connecting | 98.93 | |
| 2vsd_A | 105 | CHIR AB1; immune system receptor, FC receptor; HET | 98.92 | |
| 1hxm_B | 242 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 98.92 | |
| 1mju_H | 227 | Immunoglobulin MS6-12; catalytic antibody, ester h | 98.92 | |
| 2gjj_A | 264 | A21 single-chain antibody fragment against ERBB2; | 98.92 | |
| 1dee_B | 223 | IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin | 98.92 | |
| 1xt5_A | 135 | Variable region-containing chitin-binding protein | 98.91 | |
| 1ow0_A | 214 | IG alpha-1 chain C region; IGA1, fcari, CD89, anti | 98.91 | |
| 3q5y_A | 240 | TCR N15 beta; IG, T cell receptor, antigen peptide | 98.91 | |
| 1c5d_H | 215 | Monoclonal antibody against the main immunogenic t | 98.91 | |
| 2wbj_D | 279 | OB TCR; transmembrane, immune response, T cell rec | 98.91 | |
| 3mtr_A | 215 | N-CAM-1, NCAM-1, neural cell adhesion molecule 1; | 98.9 | |
| 3nl4_H | 215 | Antigen binding fragment,immunoglobulin IGG - HEA; | 98.9 | |
| 2w59_A | 231 | IGY FCU3-4; immunoglobulin, avian, immune system; | 98.9 | |
| 3qib_D | 270 | 2B4 beta chain; IG domain, immune system; HET: NAG | 98.89 | |
| 2xqy_G | 261 | A13-D6.3 monoclonal antibody, envelope glycoprotei | 98.89 | |
| 2fbj_H | 220 | IGA-kappa J539 FAB (heavy chain); immunoglobulin; | 98.89 | |
| 1i1c_A | 239 | IGG2A, IG gamma-2A chain C region; FC, immune syst | 98.87 | |
| 3to4_D | 253 | NKT vbeta2 (mouse variable domain, human constant; | 98.87 | |
| 3bn9_D | 257 | E2 FAB heavy chain; antibody-protease complex, pro | 98.86 | |
| 1x9q_A | 268 | SCFV, 4M5.3 anti-fluorescein single chain antibody | 98.84 | |
| 1l6x_A | 207 | Immunoglobulin gamma-1 heavy chain constant regio; | 98.84 | |
| 2ptt_A | 110 | CD48 antigen; CD244, CD48, NK cell receptor, X-RAY | 98.84 | |
| 1h5b_A | 113 | Murine T cell receptor (TCR) valpha domain; immune | 98.83 | |
| 2aty_A | 376 | Complement receptor chimeric conjugate CR2-IG; imm | 98.83 | |
| 1mqk_L | 120 | Antibody 7E2 FV fragment, light chain; membrane pr | 98.83 | |
| 2d9c_A | 136 | Signal-regulatory protein beta-1; beta-sandwich, S | 98.83 | |
| 1mq8_A | 291 | ICAM-1, intercellular adhesion molecule-1, CD54 an | 98.83 | |
| 1bec_A | 238 | 14.3.D T cell antigen receptor; T cell receptor; 1 | 98.82 | |
| 1i1c_A | 239 | IGG2A, IG gamma-2A chain C region; FC, immune syst | 98.82 | |
| 2edo_A | 121 | CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte | 98.8 | |
| 3m8o_H | 221 | Immunoglobulin A1 heavy chain; immunoglobulin fold | 98.8 | |
| 2aw2_A | 120 | B and T lymphocyte attenuator; IGI domain, IGG dom | 98.8 | |
| 2or8_A | 116 | Hepatitis A virus cellular receptor 1 homolog; bet | 98.8 | |
| 2q20_A | 109 | VK1 O18/O8 germline light chain variable domain; A | 98.79 | |
| 2oyp_A | 109 | Hepatitis A virus cellular receptor 2; TIM-3, T-ce | 98.79 | |
| 1qfw_M | 108 | FV, antibody (anti beta subunit) (light chain); gl | 98.79 | |
| 3u1s_H | 267 | FAB PGT145 heavy chain; IGG, broadly neutralizing | 98.79 |
| >3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-61 Score=488.18 Aligned_cols=313 Identities=53% Similarity=0.745 Sum_probs=274.7
Q ss_pred eeecccceeEEEEeccCC-------CCCCCcccccchhhhhhhhh-hhhhhcccccchhhhhhhHHHhhcccccccccch
Q psy10160 243 YCQHHYYSQFCCESCTRA-------GQLPSYGPHIKRAVEAEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDPN 314 (558)
Q Consensus 243 ~~~~g~~~~~~c~~~~~~-------g~~~~~~~w~~~~l~~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~~~ 314 (558)
+++.|.++.|+..++... ....+.+.-+.+.+.....+ ++++|.||||+|+|+|+|+||++++ |++.|.|+
T Consensus 154 hVn~gqSsND~~~Ta~~l~~~~~~~~~L~~~L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~P~TlG~~~~~-~~~~l~rd 232 (482)
T 3gtd_A 154 HVNKGQSSNDSFPTAMHIATVLATKQQLIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSG-YITQIEYA 232 (482)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTGGGCEEEEEETTEEEEEEEHHHHHHH-HHHHHHHH
T ss_pred cCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEeeccccCccCCCCcHHHHHHH-HHHHHHHH
Confidence 345566666665554320 01222333333333334444 8999999999999999999999998 99999999
Q ss_pred HHHHHhHhhhh---hhhc-CCCCC----hhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHH
Q psy10160 315 DRQALNIVSIF---YFTY-LVKLS----ELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKI 386 (558)
Q Consensus 315 ~~~l~~~~~~~---~~~g-~~g~~----~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~ 386 (558)
++||+++..++ +++| ++||. .+|++.+.+++++.|||+..+.+|++|++++||+++|++++|+.++.+|+||
T Consensus 233 ~~RL~~~~~~l~~~~lGgtAvGT~~~~~~~~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~Ki 312 (482)
T 3gtd_A 233 LERIEDALKKVYLLAQGGTAVGTGINSKIGFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKI 312 (482)
T ss_dssp HHHHHHHHTTTTEECTTCTTTSSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccccCCCcCCchhHHHHHHHHHHHhCCCCccccchhhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999877655 5566 45873 4577788999999999998789999999999999999999999999999999
Q ss_pred hhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHH
Q psy10160 387 ANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLR 466 (558)
Q Consensus 387 a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (558)
|+||++|+||||+||||+.+|++++|||||||||||+.+|.++++|++++|++.++++....++||+|++.|++.|++|+
T Consensus 313 a~DlrllsSgpr~g~gEi~lp~~~~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~~~pl~~~~~l~ 392 (482)
T 3gtd_A 313 ANDIRLLGSGPRCGLGELHLPENEPGSSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGSNGHLELNVFKPVIIYNILQ 392 (482)
T ss_dssp HHHHHHHTCCSSSSCCCEECCCCSCCCSSSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCBTTBCCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCccCeeEEECCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHh
Q psy10160 467 SIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEEEFN 546 (558)
Q Consensus 467 ~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~ 546 (558)
++.++.++++.++.+|+++|+||++||+++++++++++|+|++++||+.|++++++|.++|++++|++.+.+.|++++++
T Consensus 393 s~~ll~~~~~~~~~~~v~gl~vn~erm~~~l~~s~~lvTaLa~~iGy~~a~~ia~~A~~~g~~l~e~~~~~~~ls~eeld 472 (482)
T 3gtd_A 393 SIELLSDSVNSFVTHCVKGLEPNIARINTLRDKSLMLVTVLNPHIGYDNAAKIAKEAHKYGITLKEAAKKLNFLSEEEFD 472 (482)
T ss_dssp HHHHHHHHHHHHHHHTTTTCEECHHHHHHHHHHCGGGHHHHHHHHCHHHHHHHHHHHHHHTCCHHHHHHHTTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCEECHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccccC
Q psy10160 547 KWVVPEDMLG 556 (558)
Q Consensus 547 ~~~~p~~~~~ 556 (558)
++|||+.|+|
T Consensus 473 ~~ldP~~~~g 482 (482)
T 3gtd_A 473 KIVVPEKMIS 482 (482)
T ss_dssp HHHSCC----
T ss_pred HHcCHHHhcC
Confidence 9999999986
|
| >3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-61 Score=488.65 Aligned_cols=315 Identities=58% Similarity=0.833 Sum_probs=273.9
Q ss_pred eeecccceeEEEEeccCC-------CCCCCcccccchhhhhhhhh-hhhhhcccccchhhhhhhHHHhhcccccccccch
Q psy10160 243 YCQHHYYSQFCCESCTRA-------GQLPSYGPHIKRAVEAEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDPN 314 (558)
Q Consensus 243 ~~~~g~~~~~~c~~~~~~-------g~~~~~~~w~~~~l~~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~~~ 314 (558)
+++.|.++.|+..++... ....+.+.-+.+.+.....+ ++++|.||||+|+|+|+|+||++++ |++.|.|+
T Consensus 160 hVn~gqSsND~~~Ta~~l~~~~~~~~~L~~~L~~L~~aL~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~~~~-~a~~l~rd 238 (490)
T 3e04_A 160 HVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSG-YVQQVKYA 238 (490)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHHHHH
T ss_pred ccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCceeeccccCccCCCCcHHHHHHH-HHHHHHHH
Confidence 344555666555554320 01222333333333334444 8899999999999999999999998 99999999
Q ss_pred HHHHHhHhhhh---hhhc-CCCCC----hhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHH
Q psy10160 315 DRQALNIVSIF---YFTY-LVKLS----ELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKI 386 (558)
Q Consensus 315 ~~~l~~~~~~~---~~~g-~~g~~----~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~ 386 (558)
++||+++..++ +++| ++||+ .+|++.+.+++++.|||+..+.+|++||+++||+++|++++|+.++.+|+||
T Consensus 239 ~~RL~~~~~~l~~~~lGgtAvGTg~~~~~~~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~ve~~~~L~~la~~L~Ki 318 (490)
T 3e04_A 239 MTRIKAAMPRIYELAAGGTAVGTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKI 318 (490)
T ss_dssp HHHHHHTCTTTSEECTTCTTTSSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccccCCCcCChhHHHHHHHHHHHHhCCCCcCCCCHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999877555 5566 45873 4677789999999999998789999999999999999999999999999999
Q ss_pred hhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHH
Q psy10160 387 ANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLR 466 (558)
Q Consensus 387 a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (558)
|+||++|+||||+||||+.+|+.++|||||||||||+.+|.+++.|++++|++.++.+....++||++++.|++.+++|+
T Consensus 319 a~DlrllsSgpr~g~gEi~lp~~~~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~ai~~a~~~g~~eln~~~p~~~~~ll~ 398 (490)
T 3e04_A 319 ANDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVFKPMMIKNVLH 398 (490)
T ss_dssp HHHHHHHTCCSSSSCCCEECCCCSCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCeeEEECCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHh
Q psy10160 467 SIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEEEFN 546 (558)
Q Consensus 467 ~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~ 546 (558)
++.++.++++.++.+|+++|+||++||+++++++++++|+|++++||+.|++++++|.++|++++|++.+.+.|++++++
T Consensus 399 s~~ll~~~~~~~~~~~v~gl~vn~erm~~~l~~s~~lvTaLa~~iGy~~a~~iak~A~~~g~~l~e~~~~~~~ls~eeld 478 (490)
T 3e04_A 399 SARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFD 478 (490)
T ss_dssp HHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSGGGGGGHHHHCHHHHHHHHHHHHHHTCCHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCEECHHHHHHHHhhchHHHHHhhhHHHHHHHHHHHHHHHHHCCCHHHHHHHcCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccccCCC
Q psy10160 547 KWVVPEDMLGPK 558 (558)
Q Consensus 547 ~~~~p~~~~~~~ 558 (558)
++|||+.|+|++
T Consensus 479 ~~ldP~~~~g~~ 490 (490)
T 3e04_A 479 EWVKPKDMLGPK 490 (490)
T ss_dssp HHCCGGGSSCC-
T ss_pred HHcCHHHhcCCC
Confidence 999999999974
|
| >4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-60 Score=482.91 Aligned_cols=310 Identities=37% Similarity=0.549 Sum_probs=266.6
Q ss_pred ccceeEEEEeccCCCCCCCcc--------cccchhhhhhhhh-hhhhhcccccchhhhhhhHHHhhcccccccccchHHH
Q psy10160 247 HYYSQFCCESCTRAGQLPSYG--------PHIKRAVEAEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDPNDRQ 317 (558)
Q Consensus 247 g~~~~~~c~~~~~~g~~~~~~--------~w~~~~l~~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~~~~~~ 317 (558)
|.+++|+..++.. ......+ .-+.+.+.....+ ++++|.||||+|+|+|+|+||++++ |++.|.|+++|
T Consensus 158 g~SsNDv~~Ta~~-L~lr~~l~~~l~~~L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~PiT~G~~~~~-~a~~l~rd~~R 235 (495)
T 4adm_A 158 SQSSNDTFPTATH-IAATEAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSG-YARQIEAGIER 235 (495)
T ss_dssp TCCHHHHHHHHHH-HHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHHHHHHHH
T ss_pred CCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCcccccchHHHHHHH-HHHHHHHHHHH
Confidence 6677777666544 2222222 2222222233334 8899999999999999999999998 99999999999
Q ss_pred HHhHhhh---hhhhc-CCCCCh----hHHHHHHHHHHhHhCC-CcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhh
Q psy10160 318 ALNIVSI---FYFTY-LVKLSE----LLETKCAAKIAELTGL-PFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAN 388 (558)
Q Consensus 318 l~~~~~~---~~~~g-~~g~~~----~~~~~~~~~~a~~lg~-~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~ 388 (558)
|+++..+ +++|| |+||+. .|+..+.+++++.||| +..+.+|++||+++||+++|++++|+.++.+|+|||+
T Consensus 236 L~~~~~~l~~~~LGgtAvGT~~~~~~~~~~~v~~~la~~lG~~~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~ 315 (495)
T 4adm_A 236 VRACLPRLGELAIGGTAVGTGLNAPDDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIAN 315 (495)
T ss_dssp HHHHHHHHTEECTTCTTTSSCTTSCTTHHHHHHHHHHHHHCCTTCEECSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeeecCCccCChhHHHHHHHHHHHHhCCCCCccccchHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9877654 45666 678853 5666788999999999 6788999999999999999999999999999999999
Q ss_pred hhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHHH
Q psy10160 389 DIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSI 468 (558)
Q Consensus 389 d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (558)
||++|+||||+|||||.+|+.++|||||||||||+.+|.++++|++++|++.+++..+.+++|+++.+.+.+.+++++++
T Consensus 316 DlrllsSgpr~e~gei~lp~~q~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~~~p~i~~~l~~s~ 395 (495)
T 4adm_A 316 DIRWMGSGPLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNVYIPMMARNILESF 395 (495)
T ss_dssp HHHHHTCBSTTSCCCEECCCC---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcceEECCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHcChHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888999999999998899999999
Q ss_pred HHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCC----CCHHH
Q psy10160 469 RLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGY----LTEEE 544 (558)
Q Consensus 469 ~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~----l~~~~ 544 (558)
..+.+++..++..|+++|+||++||+++++.+++++|+|++++||+.|+++|++|.++|++++|++.+.+. |+++|
T Consensus 396 ~~l~~~l~~~~~~~l~gl~vn~erm~~~l~~s~~l~t~La~~igy~~a~~ia~~a~~~g~~l~e~~~~~~~~~~~ls~ee 475 (495)
T 4adm_A 396 KLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDRGLIGDRLSIED 475 (495)
T ss_dssp HHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCGGGGGGGHHHHCHHHHHHHHHHHHHHTCCHHHHHHHTTCCBTTBCHHH
T ss_pred HHHHHHHHHHHHHHHccCEECHHHHHHHHhccccHHHHhhhhhhHHHHHHHHHHHHHhCCCHHHHHHhCcccccCCCHHH
Confidence 99999999988889999999999999999999999999999999999999999999999999999998765 99999
Q ss_pred HhhhcCcccccCCC
Q psy10160 545 FNKWVVPEDMLGPK 558 (558)
Q Consensus 545 ~~~~~~p~~~~~~~ 558 (558)
++++|||+.|+|+.
T Consensus 476 l~~~ldp~~~~~~~ 489 (495)
T 4adm_A 476 LDRRLDVLAMAKAE 489 (495)
T ss_dssp HHHHTCHHHHTTCC
T ss_pred HHHHcCHHHhcCCc
Confidence 99999999999873
|
| >1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-59 Score=475.58 Aligned_cols=315 Identities=52% Similarity=0.765 Sum_probs=278.0
Q ss_pred eeeecccceeEEEEeccCCCCCCCccc-ccc-------hhhhhhhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 242 RYCQHHYYSQFCCESCTRAGQLPSYGP-HIK-------RAVEAEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 242 ~~~~~g~~~~~~c~~~~~~g~~~~~~~-w~~-------~~l~~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
.++|.|.+++|+..++.. ......+. .+. +.+.....+ ++++|.||||+|+|+|+|+||++++ |++.|.
T Consensus 157 d~Vn~g~SsNDv~~Ta~~-L~lr~~l~~~l~~~L~~L~~~L~~~A~e~~~~v~~GrTHlQ~A~PiT~G~~~~~-~~~~l~ 234 (488)
T 1yfm_A 157 NHCNQSQSSNDTFPTVMH-IAASLQIQNELIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSG-YVQQVE 234 (488)
T ss_dssp CCCTTTCCHHHHHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHHH
T ss_pred cCcCCCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeceecCccceEeeHHHHHHH-HHHHHH
Confidence 344577778777776654 33333332 222 222223334 8899999999999999999999998 999999
Q ss_pred chHHHHHhHhhh---hhhhc-CCCCChh----HHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHH
Q psy10160 313 PNDRQALNIVSI---FYFTY-LVKLSEL----LETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLM 384 (558)
Q Consensus 313 ~~~~~l~~~~~~---~~~~g-~~g~~~~----~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~ 384 (558)
|+++||+++..+ +++|| |+||+.. |++.+.+++|+.|||++.+.+|++|++++||+++|++++|+.++.+|+
T Consensus 235 rd~~RL~~~~~~l~~~~lGgtAvGT~~~~~~~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~ 314 (488)
T 1yfm_A 235 NGIQRVAHSLKTLSFLAQGGTAVGTGLNTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLF 314 (488)
T ss_dssp HHHHHHHHHHHHHTEECTTCTTTSSCTTSCTTHHHHHHHHHHHHHSSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCccccCCccCChhHHHHHHHHHHHHhCCCCccCccHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 999999877655 45566 6787654 455788999999999988899999999999999999999999999999
Q ss_pred HHhhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHH
Q psy10160 385 KIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNV 464 (558)
Q Consensus 385 k~a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (558)
|||+||++|+||||+|||||.+|++++|||||||||||+.+|.++++|++++|++.+++..+.++++|++...+.+.+++
T Consensus 315 Kia~DlrllsS~pr~g~gei~lp~~~~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~~~p~~~~~l 394 (488)
T 1yfm_A 315 KIAQDIRYLGSGPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFKPVMIANL 394 (488)
T ss_dssp HHHHHHHHHTCCSSSSCCCEECCCCSCCCTTSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCCceeEECCCCCCcCCCcccccCcHHHHHHHHHHHHHHhHHHHHHHHHhcccchhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888889999999999988999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHH
Q psy10160 465 LRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEEE 544 (558)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~~ 544 (558)
++++..+.+++..+..+++++|+||++||+++++.+++++|+|++++||+.|++++++|.++|++++|++.+.+.|+++|
T Consensus 395 ~~s~~~l~~~l~~~~~~~i~gl~vn~erm~~~l~~s~~l~t~La~~lg~~~a~~i~~~a~~~g~~l~e~~~~~~~l~~ee 474 (488)
T 1yfm_A 395 LNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAASKVAKNAHKKGITLKESALELGVLTEKE 474 (488)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSGGGTTTGGGTCHHHHHHHHHHHHHHTCCHHHHHHHTTSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHccCchHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHhcCCCCHHH
Confidence 99999999999888788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCcccccCCC
Q psy10160 545 FNKWVVPEDMLGPK 558 (558)
Q Consensus 545 ~~~~~~p~~~~~~~ 558 (558)
++++|||+.|+|++
T Consensus 475 l~~~ldp~~~~~~~ 488 (488)
T 1yfm_A 475 FDEWVVPEHMLGPK 488 (488)
T ss_dssp HHHHCCGGGCC---
T ss_pred HHHhcCHHHhcCCC
Confidence 99999999999874
|
| >3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-59 Score=474.22 Aligned_cols=307 Identities=34% Similarity=0.506 Sum_probs=267.8
Q ss_pred ecccceeEEEEeccCCCCCCCccc-------ccchhhhhhhhh-hhhhhcccccchhhhhhhHHHhhcccccccccchHH
Q psy10160 245 QHHYYSQFCCESCTRAGQLPSYGP-------HIKRAVEAEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDPNDR 316 (558)
Q Consensus 245 ~~g~~~~~~c~~~~~~g~~~~~~~-------w~~~~l~~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~~~~~ 316 (558)
+.|.+++|+..++.. ......+. -+.+.+.....+ ++++|.||||+|+|+|+|+||++++ |++.|.|+++
T Consensus 156 n~g~SsNDv~~Ta~~-L~~~~~l~~L~~~L~~L~~~L~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~~~~-~a~~l~rd~~ 233 (478)
T 3ocf_A 156 NMSQSTNDVYPTAVR-LALLLSQNQVQTALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEA-FAATLREDTA 233 (478)
T ss_dssp TTTCCHHHHHHHHHH-HHHHHTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHHHHHHH
T ss_pred CCCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEeecccccccceeecHHHHHHH-HHHHHHHHHH
Confidence 366667766665543 22222222 222223333334 8899999999999999999999998 9999999999
Q ss_pred HHHhHhhhh---hhhc-CCCCCh----hHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhh
Q psy10160 317 QALNIVSIF---YFTY-LVKLSE----LLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAN 388 (558)
Q Consensus 317 ~l~~~~~~~---~~~g-~~g~~~----~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~ 388 (558)
||+++..++ +++| |+||+. .|+..+.+++++.|||++.+.+|++|++++||+++|++++|+.++.+|+|||+
T Consensus 234 RL~~~~~~l~~~~lGgtAvGTg~~~~~~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~ 313 (478)
T 3ocf_A 234 RLEEVAALFREVNLGGTAIGTRINASHAYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIAN 313 (478)
T ss_dssp HHHHHHHGGGEECTTC-----------CHHHHHHHHHHHHHTSCCEECSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhCCCCeeeCCCcCCChhHHHHHHHHHHHhcCCCCccCCChhhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877555 5666 677743 34457889999999999888999999999999999999999999999999999
Q ss_pred hhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHHH
Q psy10160 389 DIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSI 468 (558)
Q Consensus 389 d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (558)
||++|+||||+|||||.+|+.++|||||||||||+.+|.++++|++++|++.+++..+.+++||++.+.+.+.+++++++
T Consensus 314 DlrllsSgpr~g~gEi~lp~~q~GSSiMP~K~NPv~~E~i~~~a~~V~G~~~~i~~a~~~g~leln~~~p~i~~~l~~s~ 393 (478)
T 3ocf_A 314 DLRLLSSGPRSGLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEPLIVYNILSSM 393 (478)
T ss_dssp HHHHHTCBSSSSCCCEECCCCSCCBTTBTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCceeEEECCCCCCcCCCCCcccCcHHHHHHHHHHHHHHhHHHHHHHHHhcCcchhcccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888999999999998899999999
Q ss_pred HHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhh
Q psy10160 469 RLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEEEFNKW 548 (558)
Q Consensus 469 ~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~ 548 (558)
.++.+++..+...|+++|+||+|||+++++.+++++|+|++++||+.|++++++|.++|++++|++.+.+. ++++++++
T Consensus 394 ~ll~~~~~~~~~~~v~gl~vn~erm~~~l~~s~~lvtaLa~~igy~~a~~ia~~A~~~g~~l~e~~~~~~~-s~eel~~~ 472 (478)
T 3ocf_A 394 RLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVVGYARAAEIAKQALASGQTVMEVAISKGL-DASALTIM 472 (478)
T ss_dssp HHHHHHHHHHHHHTGGGCEECHHHHHHHHHTCGGGGGGGHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTC-CCHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCEECHHHHHHHHHhCccHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCC-CHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999886 99999999
Q ss_pred cCcccc
Q psy10160 549 VVPEDM 554 (558)
Q Consensus 549 ~~p~~~ 554 (558)
|||+++
T Consensus 473 ldp~~m 478 (478)
T 3ocf_A 473 LDPLRM 478 (478)
T ss_dssp TCSCC-
T ss_pred cCcccC
Confidence 999874
|
| >3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-59 Score=476.17 Aligned_cols=313 Identities=33% Similarity=0.513 Sum_probs=275.9
Q ss_pred eeecccceeEEEEeccCCCCCCCcccccch-------hhhhhhhh-hhhhhcccccchhhhhhhHHHhhcccccccccch
Q psy10160 243 YCQHHYYSQFCCESCTRAGQLPSYGPHIKR-------AVEAEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDPN 314 (558)
Q Consensus 243 ~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~-------~l~~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~~~ 314 (558)
++++|.+++|+..++.. ......+..+.. .+.....+ ++++|.||||+|+|+|+|+||++++ |++.|.|+
T Consensus 134 hVn~g~SsnDv~~Ta~~-L~~r~~l~~l~~~L~~L~~~L~~~A~~~~~~v~~GrTHlQ~A~PiT~G~~~~~-~~~~l~rd 211 (468)
T 3r6q_A 134 HVNMSQSTNDAFPTATH-IAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEA-YARVIARD 211 (468)
T ss_dssp CCTTTCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHHHHH
T ss_pred CCCCCCChHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEEecCcCCccceeccHHHHHHH-HHHHHHHH
Confidence 34467777777776654 233333222222 22223333 8899999999999999999999998 99999999
Q ss_pred HHHHHhHhhh---hhhhc-CCCCCh----hHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHH
Q psy10160 315 DRQALNIVSI---FYFTY-LVKLSE----LLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKI 386 (558)
Q Consensus 315 ~~~l~~~~~~---~~~~g-~~g~~~----~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~ 386 (558)
++||+++..+ ++++| |+||+. .|+..+.+++++.|||+..+.+|++||+++||+++|++++|+.++.+|+||
T Consensus 212 ~~RL~~~~~~l~~~~lGgtAvGT~~~~~~~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~Ki 291 (468)
T 3r6q_A 212 IERIANTRNNLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKI 291 (468)
T ss_dssp HHHHHHTHHHHTEECTTCTTTSSCTTCCHHHHHHHHHHHHHHHCSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCeecCCCCCCChHHHHHHHHHHHHHhCCCCccccchHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 9999877644 56666 678754 345578899999999998788999999999999999999999999999999
Q ss_pred hhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHH
Q psy10160 387 ANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLR 466 (558)
Q Consensus 387 a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (558)
|+||++|+||||+|||||.+|+.++|||||||||||+.+|.++++|++++|++.+++..+..++||++.+.+.+..++++
T Consensus 292 a~DlrllsS~pr~g~gei~lp~~~~GSSiMP~K~NP~~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~~~p~i~~~l~~ 371 (468)
T 3r6q_A 292 ANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQ 371 (468)
T ss_dssp HHHHHHHHCBSSSSCCCEECCCCSCCCTTSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCeeEEECCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHcCchhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888999999998888888999
Q ss_pred HHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHh
Q psy10160 467 SIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEEEFN 546 (558)
Q Consensus 467 ~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~ 546 (558)
++..+.+++..+.++|+++|+||++||+++++.+++++|+|++++||+.|++++++|.++|++++|++.+.+.|++++++
T Consensus 372 s~~~l~~~l~~~~~~~i~gl~vn~erm~~~l~~s~~l~t~La~~lgy~~a~~ia~~a~~~g~~l~e~~~~~~~ls~eel~ 451 (468)
T 3r6q_A 372 SISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQLN 451 (468)
T ss_dssp HHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCCchHHhcchhhHHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHH
Confidence 99999999988887899999999999999999999999999999999999999999999999999999998899999999
Q ss_pred hhcCcccccCC
Q psy10160 547 KWVVPEDMLGP 557 (558)
Q Consensus 547 ~~~~p~~~~~~ 557 (558)
++|||+.|+++
T Consensus 452 ~~ldp~~~~~~ 462 (468)
T 3r6q_A 452 EILNPYEMIHP 462 (468)
T ss_dssp HHSCHHHHTSC
T ss_pred HHcCHHHhcCC
Confidence 99999999986
|
| >1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-58 Score=472.04 Aligned_cols=315 Identities=49% Similarity=0.744 Sum_probs=278.5
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccc-cch-------hhhhhhhh-hhhhhcccccchhhhhhhHHHhhcccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPH-IKR-------AVEAEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNL 311 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w-~~~-------~l~~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l 311 (558)
..++|.|.+++|+..++.. ...+..+.. +.. .+.....+ ++++|.||||+|+|+|+|+||++++ |++.|
T Consensus 131 ~~~Vn~g~SsnD~~~Ta~~-L~lr~~l~~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~-~~~~l 208 (467)
T 1fur_A 131 NDDVNKSQSSNDVFPTAMH-VAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTNLQDATPLTLGQEISG-WVAML 208 (467)
T ss_dssp CCCCTTTCCHHHHHHHHHH-HHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHH
T ss_pred hhhcccCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeccccCccceeeeHHHHHHH-HHHHH
Confidence 3445688888888777755 333333322 222 22223333 8899999999999999999999998 99999
Q ss_pred cchHHHHHhHhhhh---hhhc-CCCCChh----HHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHH
Q psy10160 312 DPNDRQALNIVSIF---YFTY-LVKLSEL----LETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSL 383 (558)
Q Consensus 312 ~~~~~~l~~~~~~~---~~~g-~~g~~~~----~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l 383 (558)
.|+++||+++..++ ++|| |+||+.. |++.+.+++|+.|||+..+.+|++||+++||+++|++++|+.++++|
T Consensus 209 ~r~~~rL~~~~~~l~~~~lGgtAvGT~~~~~~~~~~~v~~~la~~LGl~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L 288 (467)
T 1fur_A 209 EHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASL 288 (467)
T ss_dssp HHHHHHHHHHHHHHTEECTTCTTTSSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCcCcchhcCCccCChhHHHHHHHHHHHHhCCCCccCCCHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 99999999877554 5556 7888643 55688999999999998899999999999999999999999999999
Q ss_pred HHHhhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHH
Q psy10160 384 MKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSN 463 (558)
Q Consensus 384 ~k~a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (558)
+|||+||++|+||||+||||+.+|++++|||||||||||+.+|.++++|++++|++.+++...+.+++|++.+.|...+.
T Consensus 289 ~kia~Dl~ll~S~~r~~~gei~lp~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ 368 (467)
T 1fur_A 289 MKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPMVIHN 368 (467)
T ss_dssp HHHHHHHHHHTCCSSSSCCSEECCCCSCCCTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCccCceeEECCCCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHH
Q psy10160 464 VLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEE 543 (558)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~ 543 (558)
+++++..+.+++..+..+++++|+||++||+++++.+++++|+|++++||+.|++++++|.++|++++|++.+...|+++
T Consensus 369 l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~l~~~~~l~t~La~~lg~~~a~~~~~~a~~~g~~l~e~~~~~~~l~~~ 448 (467)
T 1fur_A 369 FLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEA 448 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSTTHHHHHTTSCHHHHHHHHHHHHHHTCCHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCeeCHHHHHHHHHhCccHHHHhHhhccHHHHHHHHHHHHHcCCCHHHHHHhcCCCCHH
Confidence 99999999999988878899999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHhhhcCcccccCC
Q psy10160 544 EFNKWVVPEDMLGP 557 (558)
Q Consensus 544 ~~~~~~~p~~~~~~ 557 (558)
+++++|||+.|+++
T Consensus 449 e~~~~ldp~~~~~~ 462 (467)
T 1fur_A 449 EFDSWVRPEQMVGS 462 (467)
T ss_dssp HHHHHCCGGGC---
T ss_pred HHHHhcCHHHHhCc
Confidence 99999999999986
|
| >4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-58 Score=471.62 Aligned_cols=316 Identities=50% Similarity=0.713 Sum_probs=277.4
Q ss_pred ceeeecccceeEEEEeccCCCCC--------CCcccccchhhhhhhhh-hhhhhcccccchhhhhhhHHHhhcccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQL--------PSYGPHIKRAVEAEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNL 311 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~--------~~~~~w~~~~l~~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l 311 (558)
..++|.|.+++|+..++.. ... .+.+.-+.+.+.....+ ++++|.||||+|+|+|+|+||++++ |++.|
T Consensus 163 nd~Vh~gqSsnDv~~TA~~-l~~~~~~~~~L~~~L~~L~~~L~~kA~~~~~~~~~GRTHlQ~A~P~TlG~~~~~-~~~~l 240 (495)
T 4hgv_A 163 NDHVNMSQSSNDTYPTAMH-IACAERVIHDLLPALKHLHKALEEKVKAFDHIIKIGRTHTQDATPLTLGQEFSG-YAAQV 240 (495)
T ss_dssp CCCCTTTCCHHHHHHHHHH-HHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEHHHHHHH-HHHHH
T ss_pred HHhccCCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecccCCCCceeecHHHHHHH-HHHHH
Confidence 4567888888888877743 111 12222223333333344 8999999999999999999999998 99999
Q ss_pred cchHHHHHhHhhhh---hhhc-CCCCCh----hHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHH
Q psy10160 312 DPNDRQALNIVSIF---YFTY-LVKLSE----LLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSL 383 (558)
Q Consensus 312 ~~~~~~l~~~~~~~---~~~g-~~g~~~----~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l 383 (558)
.|+++||+++..++ .++| ++|++. ++...+.+++++.+||.+.+.+|+++|+++||+++|++++|+.++.+|
T Consensus 241 ~r~~~RL~~~~~~~~~~~lGgtAvGtg~~~~~~~~~~v~~~la~~~gl~f~~a~n~~~~~~~rD~~~e~~~~L~~la~~L 320 (495)
T 4hgv_A 241 ASSIKRIEMTLPGLCELAQGGTAVGTGLNAPVGFAEKVAEEIAAITGIGFTSAPNKFEALAAHDSMVFSHGAINATAAAL 320 (495)
T ss_dssp HHHHHHHHHTHHHHTEECTTCTTTSSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCcchhhhcccCchhHHHHHHHHHHHHhCCCccccCCHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 99999998776554 4455 566543 455577889999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHH
Q psy10160 384 MKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSN 463 (558)
Q Consensus 384 ~k~a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (558)
+|||+||++|+|||+.||+|+.+|++++|||||||||||+.+|.++++|++++|+..++......+++|+|.+.|.++|.
T Consensus 321 ~Kia~Dirll~S~~~~g~~Ei~~p~~q~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~~~~e~n~~~~~~~~~ 400 (495)
T 4hgv_A 321 FKIANDIRFLGSGPRSGLGELSLPENEPGSSIMPGKVNPTQCEALTQVCVQVFGNHAALTFAGSQGHFELNVYNPLMAYN 400 (495)
T ss_dssp HHHHHHHHHHTCCSSSSCCCEECCCCSCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCcceeeeEEecCcCCcccccCccccChHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHH
Q psy10160 464 VLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEE 543 (558)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~ 543 (558)
+|+++.++.++++.++.+|+++|+||++||+++++.+++++|+|++.+||+.|++++++|.++|++++|++.+.+.|+++
T Consensus 401 ll~s~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~lvtaL~~~iGy~~A~~iak~A~~~g~~lre~~~~~~~ls~e 480 (495)
T 4hgv_A 401 FLQSVQLLADAAISFTDNCVVGIEAREDNIKAALDRSLMLVTALAPKIGYDNAAKIAKTAHKNGTTLREEAVGGGYVTDE 480 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSGGGGGTHHHHCHHHHHHHHHHHHHHTCCHHHHHHTTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCEECHHHHHHHHhcChhHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCcccccCCC
Q psy10160 544 EFNKWVVPEDMLGPK 558 (558)
Q Consensus 544 ~~~~~~~p~~~~~~~ 558 (558)
|++++|||++|+|++
T Consensus 481 eld~lldP~~~~gpA 495 (495)
T 4hgv_A 481 EFDAVVRPETMIGPA 495 (495)
T ss_dssp HHHHHCCGGGSSSCC
T ss_pred HHHHhCCHHHhcCCC
Confidence 999999999999984
|
| >1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-58 Score=472.03 Aligned_cols=314 Identities=29% Similarity=0.446 Sum_probs=273.9
Q ss_pred eeeecccceeEEEEeccCCCCCCCcccccchhhh-------hhhhh-hhhhhcccccchhhhhhhHHHhhcccccccccc
Q psy10160 242 RYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVE-------AEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDP 313 (558)
Q Consensus 242 ~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~-------~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~~ 313 (558)
.++|.|.+++|+..++.. ...+..+..+...+. ....+ ++++|.||||+|+|+|+|+||++++ |++.|.|
T Consensus 136 d~Vn~g~SsnDv~~Ta~~-L~lr~~l~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~-~~~~l~r 213 (478)
T 1jsw_A 136 DHVNKCQSTNDAYPTGFR-IAVYSSLIKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRA-FSILLKE 213 (478)
T ss_dssp CCCSCSCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCEEECCGGGSCCCEEEHHHHHHH-HHHHHHH
T ss_pred ccccCCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeeeccccCccceeehHHHHHHH-HHHHHHH
Confidence 355678888888777755 333333332332222 22233 8899999999999999999999998 9999999
Q ss_pred hHHHHHhHhhh---hhhhc-CCCCChhH----HHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHH
Q psy10160 314 NDRQALNIVSI---FYFTY-LVKLSELL----ETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMK 385 (558)
Q Consensus 314 ~~~~l~~~~~~---~~~~g-~~g~~~~~----~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k 385 (558)
+++||+++..+ ++++| |+||+..+ ++.+.+++++.|||++.+.+|++|++++||+++|++++|+.++++|+|
T Consensus 214 d~~RL~~~~~~~~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~k 293 (478)
T 1jsw_A 214 EVKNIQRTAELLLEVNLGATAIGTGLNTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSK 293 (478)
T ss_dssp HHHHHHHHHHHTTEECCSCCSSSSCSSCTTTHHHHHHHHHHHHHCCCCEECSCSSSBTTBCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCccccCCccCCcchHHHHHHHHHHHcCCCCCcCCCHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 99999987754 45566 66887544 457889999999999889999999999999999999999999999999
Q ss_pred HhhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHH
Q psy10160 386 IANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVL 465 (558)
Q Consensus 386 ~a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (558)
||+||++|+||||+|||||.+|++++|||||||||||+.+|+++++|++++|++.+++..++++++|++...+...++++
T Consensus 294 ia~Dl~ll~S~pr~e~gei~lp~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~e~~~~~p~~~~~l~ 373 (478)
T 1jsw_A 294 ICNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMF 373 (478)
T ss_dssp HHHHHHHHHCSTTTSCCCEECCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCccCceeEECCCCCCCCCCCCcccCCHHHHHHHHHHHHHHhHHHHHHHHHhccchhhcccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999888889999
Q ss_pred HHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHH
Q psy10160 466 RSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEEEF 545 (558)
Q Consensus 466 ~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~~~ 545 (558)
+++..+..++..+..+++++|+||++||+++++.+++++|+|++++||+.|+++++.|.++|++++|++.+.+.|+++++
T Consensus 374 ~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~l~~~~~l~t~La~~lg~~~a~~~v~~a~~~g~~l~e~~~~~~~l~~~~~ 453 (478)
T 1jsw_A 374 ESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEAEL 453 (478)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTCTTCGGGTHHHHCHHHHHHHHHHHHTTCCCHHHHHHHHTSSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCeecHHHHHHHHHhCchHHHHHHHhhhHHHHHHHHHHHHHhCCCHHHHHHhcCCCCHHHH
Confidence 99999999988877789999999999999999999999999999999999999999999999999999998888999999
Q ss_pred hhhcCcccccCC
Q psy10160 546 NKWVVPEDMLGP 557 (558)
Q Consensus 546 ~~~~~p~~~~~~ 557 (558)
+++|||+.|+++
T Consensus 454 ~~~ldp~~~~~~ 465 (478)
T 1jsw_A 454 DDIFSVQNLMHP 465 (478)
T ss_dssp HTSCCC------
T ss_pred HHhCCHHHHhCC
Confidence 999999999986
|
| >1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-58 Score=467.80 Aligned_cols=316 Identities=44% Similarity=0.588 Sum_probs=278.0
Q ss_pred ceeeecccceeEEEEeccCCCCCCCccc-ccchhhh-------hhhhh-hhhhhcccccchhhhhhhHHHhhcccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGP-HIKRAVE-------AEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNL 311 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~-w~~~~l~-------~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l 311 (558)
..++|.|.+++|+..++.. ...+..+. .+...+. ....+ ++++|.||||+|+|+|+|+||++++ |++.|
T Consensus 131 ~~~Vn~g~SsnD~~~Ta~~-L~lr~~l~~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~-~~~~l 208 (466)
T 1vdk_A 131 NDHVNRGQSSNDTFPTAMY-VAVALALHQRLYPAVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGS-WAAQL 208 (466)
T ss_dssp CCCCTTTCCHHHHHHHHHH-HHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHH
T ss_pred ccCcCCCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCccCCcccHHHHHHH-HHHHH
Confidence 3445588888888877765 34444443 3333222 22233 8899999999999999999999998 99999
Q ss_pred cchHHHHHhHhhhh---hhhc-CCCCChhH----HHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHH
Q psy10160 312 DPNDRQALNIVSIF---YFTY-LVKLSELL----ETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSL 383 (558)
Q Consensus 312 ~~~~~~l~~~~~~~---~~~g-~~g~~~~~----~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l 383 (558)
.|+++||++++.++ +++| |+||+..+ ++.+.+++|+.|||+..+.+|++|++++||+++|++++|+.++++|
T Consensus 209 ~r~~~RL~~~~~~~~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LG~~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L 288 (466)
T 1vdk_A 209 KTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHPRFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGAL 288 (466)
T ss_dssp HHHHHHHHHHHGGGGEECTTCTTTSSCTTSCTTHHHHHHHHHHHHHSSCCEECSCTTHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCccccCCCccCCchHHHHHHHHHHHHcCCCCCCCcchHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999999876655 4556 67886654 4578899999999998889999999999999999999999999999
Q ss_pred HHHhhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHH
Q psy10160 384 MKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSN 463 (558)
Q Consensus 384 ~k~a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (558)
+|||+||++|+||||+|||||.+|++++|||||||||||+.+|+++++|++++|++.+++..+.++++|++...+...++
T Consensus 289 ~kia~Dl~ll~S~~r~~~gei~lp~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ 368 (466)
T 1vdk_A 289 MKIGNDVRWLASGPYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKPVMAYS 368 (466)
T ss_dssp HHHHHHHHHHTCBSSSSCCSEECCCCSCCSSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCBTTBCSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCceeEECCCCCCcCCCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHccchhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHH
Q psy10160 464 VLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEE 543 (558)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~ 543 (558)
+++++..+.+++..+..+++++|+||++||+++++.+++++|+|++++||+.|++++++|.++|++++|++.+.+.|+++
T Consensus 369 l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~l~~~~~l~t~La~~lg~~~a~~~v~~a~~~g~~l~e~~~~~~~l~~~ 448 (466)
T 1vdk_A 369 TLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNKAIGYDKAAEIVKKALKEKKTLKQAALELGYLTEE 448 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTCGGGGHHHHHHHCSHHHHTTTTTSCC--CCHHHHHHHTSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCEEcHHHHHHHHHhcchHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHhcCCCCHH
Confidence 99999888888887767899999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHhhhcCcccccCCC
Q psy10160 544 EFNKWVVPEDMLGPK 558 (558)
Q Consensus 544 ~~~~~~~p~~~~~~~ 558 (558)
+++++|||+.|+++.
T Consensus 449 ~~~~~ldp~~~~~~~ 463 (466)
T 1vdk_A 449 EFDRIVVPMRLAKPH 463 (466)
T ss_dssp HHHHHCCHHHHHCCC
T ss_pred HHHHHcCHHHhcCCC
Confidence 999999999999863
|
| >2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-53 Score=432.60 Aligned_cols=308 Identities=17% Similarity=0.108 Sum_probs=266.4
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhh-------hhhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVE-------AEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~-------~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|.|.+++|+..++.. ...+..+..+...+. ....+ ++++|.||||+|+|+|+|+||++++ |++.|.
T Consensus 96 g~~vH~g~SsnDv~~Ta~~-L~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~-~~~~l~ 173 (444)
T 2pfm_A 96 RKWVHYGLTSTDVVDTALS-YILKQANEIILKDLENFVSILANKAKEHKYTIMMGRTHGVHAEPTTFGLKLGL-WYEEMK 173 (444)
T ss_dssp GGGTTTTCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHHH
T ss_pred cccccCCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecccCCccceeccHHHHHHH-HHHHHH
Confidence 4678888888888877755 333333332332222 22233 8899999999999999999999998 999999
Q ss_pred chHHHHHhHhh---hhhhhcCCCCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhhh
Q psy10160 313 PNDRQALNIVS---IFYFTYLVKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAND 389 (558)
Q Consensus 313 ~~~~~l~~~~~---~~~~~g~~g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~d 389 (558)
|+++||+++.. .+++||++||+.++++.+++++++.|||+.+... |++.+||+++|++++|+.++++|+|||+|
T Consensus 174 r~~~rL~~~~~~~~~~~lGgAvGt~~~~~~~~~~~~a~~LGl~~~~~~---d~~~~rD~~~e~~~~l~~la~~L~kia~D 250 (444)
T 2pfm_A 174 RNVERFKQAANTVRVGKLSGAVGTYANIDPFVEKYVCENLGLEAAPIS---TQTLQRDRHAHYMSTLALIATSIEKMAVE 250 (444)
T ss_dssp HHHHHHHHHHHHTCEECCCCTTSSCTTSCHHHHHHHHHHTTCEECSSC---SSSCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhccCCcCCHHHHHHHHHHhCCCCCCCC---cCccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997774 5567789999999987899999999999966655 45789999999999999999999999999
Q ss_pred hhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHH
Q psy10160 390 IRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRS 467 (558)
Q Consensus 390 ~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (558)
|++|+ ++||||+.+|+ +|+|||||||||||+.+|+++++|++++|++.+++... .+++++|...|.++|.++++
T Consensus 251 l~ll~---~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~-~~~~erd~~~~~~~~~~l~~ 326 (444)
T 2pfm_A 251 IRGLQ---KSETREVEEAFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGYMMTAYENV-PLWHERDISHSSAERVILPD 326 (444)
T ss_dssp HHHHT---STTTCSEECCCCTTCCSCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHTS-CCCTTCCSHHHHHHHHHHHH
T ss_pred HHHHh---cccccccccccccCCCcCccCCcccCCHHHHHHHHHHHHHHHHHHHHHHhC-cccccccccchHHHHHHHHH
Confidence 99999 59999999997 79999999999999999999999999999999887654 68999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhh------hhcccc-cChHHHHHH----HHHHHHcCCCHHHHHHH
Q psy10160 468 IRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLV------TALNPH-IGYDKAAKI----AKTAHKEGTTLKVAALK 536 (558)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~------~~la~~-l~~~~a~~~----~~~a~~~~~~~~~~~~~ 536 (558)
+..+...++.++.+++++|+||++||+++++.+++++ +.|++. +||++||++ ++.|.++|++++|++.+
T Consensus 327 ~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~ae~la~~L~~~gig~~~A~~iv~~~~~~a~~~g~~l~e~~~~ 406 (444)
T 2pfm_A 327 ATIALNYMLNRFGNIVKNLTVYPENMKRNMTRTYGLIYSQRVMLTLIDKGMVREEAYDIVQPKAMEAWETQVQFKELVEA 406 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTCEECHHHHHHHHTTTTTGGGHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHCCCHHHHHhc
Confidence 9999999999999999999999999999998555443 677776 999999965 77888999999999998
Q ss_pred c----CCCCHHHHhhhcCcccccCC
Q psy10160 537 L----GYLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 537 ~----~~l~~~~~~~~~~p~~~~~~ 557 (558)
. +.|++++++++|||++|+|.
T Consensus 407 ~~~~~~~l~~~~l~~~ldp~~~~~~ 431 (444)
T 2pfm_A 407 DERITSKLTQEEINECFNYEHHMQH 431 (444)
T ss_dssp CHHHHTTSCHHHHHHHTCGGGGGTT
T ss_pred chhhhccCCHHHHHHhCCHHHHHhH
Confidence 7 78999999999999999986
|
| >1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-53 Score=434.74 Aligned_cols=307 Identities=20% Similarity=0.191 Sum_probs=254.5
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhh-------hhhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVE-------AEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~-------~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|.|.+++|+..++.. ...+..+..+...+. ....+ ++++|.||||+|+|+|+|+||++++ |++.|.
T Consensus 101 ~~~vH~g~SsnD~~~Ta~~-L~~r~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~-~~~~l~ 178 (454)
T 1q5n_A 101 ARYVHWGATSQDILDTACI-LQCRDALAIVQNQVQQCYETALSQAQTYRHQVMMGRTWLQQALPITLGHKLAR-WASAFK 178 (454)
T ss_dssp GGGTTTTCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHHH
T ss_pred cccccCCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccccCCcCcccHHHHHHHH-HHHHHH
Confidence 5678888888888877755 333333332322222 22233 7899999999999999999999998 999999
Q ss_pred chHHHHHhHhh---hhhhhcCCCCChhH---HHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHH
Q psy10160 313 PNDRQALNIVS---IFYFTYLVKLSELL---ETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKI 386 (558)
Q Consensus 313 ~~~~~l~~~~~---~~~~~g~~g~~~~~---~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~ 386 (558)
|+++||+++.. .+++||++||+.++ ++.+++++++.|||+.+...| +.+||+++|++++|+.++++|+||
T Consensus 179 r~~~rL~~~~~~~~~~~lGgAvGT~~~~~~~~~~~~~~~a~~LG~~~~~~~~----~~~rD~~~e~~~~l~~la~~L~ki 254 (454)
T 1q5n_A 179 RDLDRINAIKARVLVAQLGGAVGSLASLQDQGSIVVEAYAKQLKLGQTACTW----HGERDRIVEIASVLGIITGNVGKM 254 (454)
T ss_dssp HHHHHHHHHHHHHSBCCCCCTTSSCGGGTTCHHHHHHHHHHHHTCBCCSSCC----SSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCchHhhcCcccccccHHHHHHHHHHhCcCCCCCCC----ccCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999987764 56667899999998 678999999999999877766 679999999999999999999999
Q ss_pred hhhhhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHH
Q psy10160 387 ANDIRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNV 464 (558)
Q Consensus 387 a~d~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (558)
|+||++|+ ++||||+.+|+ +++|||||||||||+.+|+++++|++++|++.+++.. ..+++++|...|...|.+
T Consensus 255 a~Dl~ll~---~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~-~~~~~erd~~~~~~~~~~ 330 (454)
T 1q5n_A 255 ARDWSLMM---QTEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAAANRVPALMSSIYQS-MVQEHERSLGAWHAEWLS 330 (454)
T ss_dssp HHHHHHHT---STTTCCEECCC-------------CCCHHHHHHHHHHHHHHHHHHHHHHT-TCCCTTSCSSHHHHHHHH
T ss_pred HHHHHHHh---ccccchhccccccCCCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh-ccchhcccccchHHHHHH
Confidence 99999999 49999999997 7999999999999999999999999999999998754 567899999999988999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhh------hhcccccChHHHHHHH----HHHHHcCCCHHHHH
Q psy10160 465 LRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLV------TALNPHIGYDKAAKIA----KTAHKEGTTLKVAA 534 (558)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~------~~la~~l~~~~a~~~~----~~a~~~~~~~~~~~ 534 (558)
++++..+...++.++.+++++|+||++||+++++.+.+++ +.|++.+||++||++| +.|.++|++++|++
T Consensus 331 l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~ae~l~~~L~~~ig~~~A~~iv~~~~~~a~~~g~~l~e~~ 410 (454)
T 1q5n_A 331 LPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECTHGLIMAEAVMMALAPHMGRLNAHHVVEAACKTAVAEQKHLKDII 410 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHTTTTGGGHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHhCcChhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999899999999999999999999999998554443 6677779999999854 78889999999999
Q ss_pred HHc----CCCCHHHHhhhcCcccccCC
Q psy10160 535 LKL----GYLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 535 ~~~----~~l~~~~~~~~~~p~~~~~~ 557 (558)
.+. ..|+++++++++||++|+|+
T Consensus 411 ~~~~~~~~~l~~~~l~~~ldp~~~~g~ 437 (454)
T 1q5n_A 411 SQVDEVKQYFNPSQLDEIFKPESYLGN 437 (454)
T ss_dssp TTCHHHHTTCCHHHHHHHTCGGGGCTT
T ss_pred hcchhhhcCCCHHHHHHhCCHHHHcCc
Confidence 876 78999999999999999986
|
| >1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-53 Score=432.57 Aligned_cols=308 Identities=17% Similarity=0.112 Sum_probs=261.6
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhh-------hhhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVE-------AEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~-------~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|.|.+++|+..++.. ...+..+..+...+. ....+ ++++|.||||+|+|+|+|+||++++ |++.|.
T Consensus 84 g~~vH~g~SsnD~~~Ta~~-l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~-~~~~l~ 161 (429)
T 1c3c_A 84 SRFFHYGLTSSDVLDTANS-LALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLG-WYSEMK 161 (429)
T ss_dssp GGGTTTTCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHHH
T ss_pred cccccCCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCcCCCcCcCCcHHHHHHH-HHHHHH
Confidence 4678888888888877755 333333333332222 22233 8899999999999999999999998 999999
Q ss_pred chHHHHHhHhh---hhhhhcCCCCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhhh
Q psy10160 313 PNDRQALNIVS---IFYFTYLVKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAND 389 (558)
Q Consensus 313 ~~~~~l~~~~~---~~~~~g~~g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~d 389 (558)
|+++||+++.. .+++||++||+.++++.+++++++.|||+.+... |++.+||+++|++++|+.++++|+|||+|
T Consensus 162 r~~~rL~~~~~~~~~~~lGgAvGt~~~~~~~~~~~~a~~LGl~~~~~~---d~~~~rD~~~e~~~~l~~~a~~L~kia~D 238 (429)
T 1c3c_A 162 RNVQRLERAIEEVSYGKISGAVGNYANVPPEVEEKALSYLGLKPEPVS---TQVVPRDRHAFYLSTLAIVAAGIERIAVE 238 (429)
T ss_dssp HHHHHHHHHHHHTCEECCCCTTSSCSSSCHHHHHHHHHHTTCEECSSC---SSSCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCchhhcCCccCCHHHHHHHHHHcCCCCCCCC---cCccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987774 5667789999999987899999999999966555 45789999999999999999999999999
Q ss_pred hhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHH
Q psy10160 390 IRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRS 467 (558)
Q Consensus 390 ~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (558)
|++|+ ++||||+.+|+ +++|||||||||||+.+|++++++++++|++.+++... .+++++|...|..++.++++
T Consensus 239 l~ll~---~~e~~El~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~-~~~~erd~~~~~~~~~~l~~ 314 (429)
T 1c3c_A 239 IRHLQ---RTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSLENI-ALWHERDISHSSVERYVFPD 314 (429)
T ss_dssp HHHHT---STTTCSEECCCCC-----CCCTTCCCCHHHHHHHHHHHHHHHTHHHHHHTT-CCSTTCCSHHHHHHHHHHHH
T ss_pred HHHHh---ccccchhccccccCCCcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcC-CccccccccccHHHHHHHHH
Confidence 99999 49999999997 78999999999999999999999999999999887654 68999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhh------hhcccc-cChHHHHHH----HHHHHHcCCCHHHHHHH
Q psy10160 468 IRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLV------TALNPH-IGYDKAAKI----AKTAHKEGTTLKVAALK 536 (558)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~------~~la~~-l~~~~a~~~----~~~a~~~~~~~~~~~~~ 536 (558)
+..+...++.++.+++++|+||++||+++++.+++++ +.|++. +||++||++ ++.|.++|++++|++.+
T Consensus 315 ~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~s~~~~~a~~la~~L~~~gig~~~A~~iv~~~~~~a~~~g~~l~e~~~~ 394 (429)
T 1c3c_A 315 ATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNSEKHFLEYLLE 394 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTTTTGGGHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSSCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCcCeeCHHHHHHHHHhccChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCHHHHHhC
Confidence 9999999999999999999999999999998555443 667776 999999965 77888999999999998
Q ss_pred c----CCCCHHHHhhhcCcccccCC
Q psy10160 537 L----GYLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 537 ~----~~l~~~~~~~~~~p~~~~~~ 557 (558)
. ..|+++++++++||+.|+|.
T Consensus 395 ~~~~~~~l~~~~l~~~ldp~~~~~~ 419 (429)
T 1c3c_A 395 DEEVKKLVTKEELEELFDISYYLKH 419 (429)
T ss_dssp CHHHHTTCCHHHHHHTTCTHHHHTT
T ss_pred ChhhhccCCHHHHHHhCCHHHHhhh
Confidence 7 78999999999999999985
|
| >1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-53 Score=433.93 Aligned_cols=307 Identities=23% Similarity=0.199 Sum_probs=257.1
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhh-------hhhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVE-------AEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~-------~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|.|.+++|+..++.. ...+..+..+...+. ....+ ++++|.||||+|+|+|+|+||++++ |++.|.
T Consensus 97 ~~~vh~g~SsnD~~~Ta~~-l~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~-~~~~l~ 174 (450)
T 1re5_A 97 ERYVHLGATSQDAMDTGLV-LQLRDALDLIEADLGKLADTLSQQALKHADTPLVGRTWLQHATPVTLGMKLAG-VLGALT 174 (450)
T ss_dssp GGGTTTTCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHHH
T ss_pred cccccCCCChhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCccCccCcHHHHHHH-HHHHHH
Confidence 6778888888888877755 333333332332222 22233 7899999999999999999999998 999999
Q ss_pred chHHHHHhHh---hhhhhhcCCCCChhHHH---HHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHH
Q psy10160 313 PNDRQALNIV---SIFYFTYLVKLSELLET---KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKI 386 (558)
Q Consensus 313 ~~~~~l~~~~---~~~~~~g~~g~~~~~~~---~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~ 386 (558)
|+++||+++. ..+++||++||+.++++ .+++++++.|||+.+..+ ++++||+++|++++|+.++++|+||
T Consensus 175 r~~~rL~~~~~~~~~~~lGGAvGt~~~~~~~~~~~~~~la~~LG~~~~~~~----~~~~rD~~~e~~~~l~~la~~L~ki 250 (450)
T 1re5_A 175 RHRQRLQELRPRLLVLQFGGASGSLAALGSKAMPVAEALAEQLKLTLPEQP----WHTQRDRLVEFASVLGLVAGSLGKF 250 (450)
T ss_dssp HHHHHHHHHHHHHSBCCCCCTTSSCGGGGGGHHHHHHHHHHHHTCBCCSSC----CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcCCcchhcCCcccCcchHHHHHHHHHHhCcCCCCcc----cccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999998776 45667789999999886 899999999999977665 4999999999999999999999999
Q ss_pred hhhhhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHH
Q psy10160 387 ANDIRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNV 464 (558)
Q Consensus 387 a~d~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (558)
|+||++|+ ++||||+.+|+ +++|||||||||||+.+|++++++++++|++.+++..+ ..++++|...|...|..
T Consensus 251 a~Dl~ll~---~~e~~El~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~-~~~~erd~~~~~~~~~~ 326 (450)
T 1re5_A 251 GRDISLLM---QTEAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLSTLFAAM-PQEHERSLGLWHAEWET 326 (450)
T ss_dssp HHHHHHHT---STTTCCEECCCCC----------CCCCHHHHHHHHHHHHHHHHHHHHHHTC-CCCTTBCSSTTTTHHHH
T ss_pred HHHHHHHh---ccCcceeecccccCCCccccCCCCcCCHHHHHHHHHHHHHHHHHHHHHHhC-hhhccccccchHHHHHH
Confidence 99999999 59999999997 69999999999999999999999999999999997655 46899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhh------hhcccccChHHHHH----HHHHHHHcCCCHHHHH
Q psy10160 465 LRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLV------TALNPHIGYDKAAK----IAKTAHKEGTTLKVAA 534 (558)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~------~~la~~l~~~~a~~----~~~~a~~~~~~~~~~~ 534 (558)
++++..+.++++.++.+++++|+||++||+++++.+++++ +.|++.+||++||+ ++++|.++|++++|++
T Consensus 327 l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~s~~~~~Ae~l~~~L~~gig~~~A~~~v~~~~~~a~~~g~~l~e~~ 406 (450)
T 1re5_A 327 LPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSIVLAQRLGRDRAHHLLEQCCQRAVAEQRHLRAVL 406 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTSTTGGGHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHHHhCcChhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999999999999999999998555444 67777899999995 5678889999999999
Q ss_pred HHc----CCCCHHHHhhhcCcccccCC
Q psy10160 535 LKL----GYLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 535 ~~~----~~l~~~~~~~~~~p~~~~~~ 557 (558)
.+. +.|++++++++|||++|+|+
T Consensus 407 ~~~~~~~~~l~~~~l~~~ldp~~~~~~ 433 (450)
T 1re5_A 407 GDEPQVSAELSGEELDRLLDPAHYLGQ 433 (450)
T ss_dssp HTCHHHHHHSCHHHHHHHTCGGGCCTT
T ss_pred HhChhhccCCCHHHHHHhcCHHHHhhh
Confidence 876 67999999999999999986
|
| >3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-53 Score=434.46 Aligned_cols=307 Identities=22% Similarity=0.195 Sum_probs=251.9
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchh-------hhhhhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRA-------VEAEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~-------l~~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|.|.+++|+..++.. ...+..+..+... +.....+ ++++|.||||+|+|+|+|+||++++ |++.|.
T Consensus 95 g~~vH~g~SsnDv~~Ta~~-L~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~-~~~~l~ 172 (451)
T 3c8t_A 95 GKYLHWGATTQDIMDTATV-LQIRDGLALISRRIESVRKALAALARNHRDTPMAGRTHLQHALPVTFGYKAAV-WLSAFD 172 (451)
T ss_dssp GGGSSSSCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHHH
T ss_pred cccccCCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCceeecccCCCCceeehHHHHHHH-HHHHHH
Confidence 4678888888888877755 3333333222222 2223233 8899999999999999999999998 999999
Q ss_pred chHHHHHhHhh---hhhhhcCCCCChhH---HHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHH
Q psy10160 313 PNDRQALNIVS---IFYFTYLVKLSELL---ETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKI 386 (558)
Q Consensus 313 ~~~~~l~~~~~---~~~~~g~~g~~~~~---~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~ 386 (558)
|+++||+++.. .+++||++||+.++ ++.+++++++.|||+.....| +.+||+++|++++|+.++++|+||
T Consensus 173 r~~~rL~~~~~~~~~~~lGgAvGT~~~~~~~~~~~~~~~a~~LGl~~~~~~~----~~~rD~~~e~~~~l~~la~~L~ki 248 (451)
T 3c8t_A 173 RHAARLEEISPRVLVVEFSGASGTLASLGTRGLDVQRELARELNLGVPSITW----HSARDAVAETVQFLALVSGSLGKL 248 (451)
T ss_dssp HHHHHHHHHHHHHCBCCCCCTTSSCGGGTTCHHHHHHHHHHHHTCBCCSSCC----SSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCchhhhcCcccccccHHHHHHHHHHhCCCCCCCCC----ccCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999987764 55667899999999 678999999999999877766 679999999999999999999999
Q ss_pred hhhhhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHH
Q psy10160 387 ANDIRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNV 464 (558)
Q Consensus 387 a~d~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (558)
|+||++|+ ++||||+.+|+ +++|||||||||||+.+|+++++|++++|++.+++.. ..+++++|...|...|.+
T Consensus 249 a~Dl~ll~---~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~-~~~~~erd~~~~~~~~~~ 324 (451)
T 3c8t_A 249 AMDISIMM---TTELGEVAEPFVRHRGASSTMPQKQNPVSCELILAGARIVRNHATSMLDA-MIHDFERATGPWHLEWSA 324 (451)
T ss_dssp HHHHHHHT---STTTCCEECC---------------CCHHHHHHHHHHHHHHHHHHHHHHH-TCCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHh---CccccccccccccCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHhc-CchhhcccccchHHHHHH
Confidence 99999999 49999999997 7999999999999999999999999999999998754 567899999999888899
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhh------hhcccccChHHHHHHH----HHHHHcCCCHHHHH
Q psy10160 465 LRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLV------TALNPHIGYDKAAKIA----KTAHKEGTTLKVAA 534 (558)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~------~~la~~l~~~~a~~~~----~~a~~~~~~~~~~~ 534 (558)
++++..+...++.++.+++++|+||++||+++++.+.+++ +.|++.+||++||++| +.|.++|++++|++
T Consensus 325 l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~ae~l~~~L~~~ig~~~A~~iv~~~~~~a~~~g~~l~e~~ 404 (451)
T 3c8t_A 325 VPEGFAVASGILYQAEFMLGGLQVFPDRMRENLDHSRGLIVAEAVMMALAPHTGRKEAHDIVYLGCRRAVEDKTGLFEVL 404 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCEECHHHHHHHHTTTTTGGGHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHHHhccChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999899999999999999999999999998554443 6667779999999854 78889999999998
Q ss_pred HHc----CCCCHHHHhhhcCcccccCC
Q psy10160 535 LKL----GYLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 535 ~~~----~~l~~~~~~~~~~p~~~~~~ 557 (558)
.+. ..|++++++++|||+.|+|+
T Consensus 405 ~~~~~~~~~l~~~~l~~~ldp~~~~~~ 431 (451)
T 3c8t_A 405 RTMPEVAKPLGEEALRDLTDPRNYLGS 431 (451)
T ss_dssp TTCHHHHHHHCHHHHHHHTCGGGCCTT
T ss_pred hcChhhhccCCHHHHHHhCCHHHHhch
Confidence 876 56899999999999999986
|
| >2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-50 Score=415.06 Aligned_cols=308 Identities=16% Similarity=0.097 Sum_probs=247.5
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|+|.|++++.+++.. ...+..+..+...+.. ...+ ++++|.||||+|+|+|+|+||++++ |++.|.
T Consensus 125 ~~~iH~G~TS~Di~dta~~-L~lr~al~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~-~~~~l~ 202 (503)
T 2j91_A 125 AGIIHLGATSCYVGDNTDL-IILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCL-WIQDLC 202 (503)
T ss_dssp GGGTTTTCCTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHHH
T ss_pred cccccCCCCHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeccccCccceecchHHHHHH-HHHHHH
Confidence 6789999999988887765 4444444333333222 2233 7899999999999999999999998 999999
Q ss_pred chHHHHHhHhhhhh---hhcCCCCChhHHH----------HHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHH
Q psy10160 313 PNDRQALNIVSIFY---FTYLVKLSELLET----------KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTV 379 (558)
Q Consensus 313 ~~~~~l~~~~~~~~---~~g~~g~~~~~~~----------~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~ 379 (558)
|+++||+++..++. .+|++||++++++ .+.+++++.|||+. ...++. |+++||+++|++++|+.+
T Consensus 203 rd~~RL~~~~~~l~~lg~gG~~GT~a~~~~~f~~D~~~~~~v~~~~a~~LGl~~-~~~~s~-~~~~rd~~~e~~~~la~l 280 (503)
T 2j91_A 203 MDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKR-AFIITG-QTYTRKVDIEVLSVLASL 280 (503)
T ss_dssp HHHHHHHHHHHHCCBCCSCCTTSSCHHHHHHTTTCHHHHHHHHHHHHHHTTCSC-BCSCCS-SSCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccccchhhhccccCCchHHHHHHHHHHHHHhCCCC-CCCccc-ccccChHHHHHHHHHHHH
Confidence 99999997776554 5678999988853 45599999999993 333443 799999999999999999
Q ss_pred HHHHHHHhhhhhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccch
Q psy10160 380 AVSLMKIANDIRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFK 457 (558)
Q Consensus 380 ~~~l~k~a~d~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (558)
+++|+|||+||++|+| +||+.+|+ +++|||||||||||+.+|+++++|++++|++++++...+..++|+|...
T Consensus 281 a~~L~kia~Dirll~s-----~~ei~ep~~~~q~GSSiMP~K~NPv~~E~i~~~a~~v~g~~~~~~~~~~~~~~erd~~~ 355 (503)
T 2j91_A 281 GASVHKICTDIRLLAN-----LKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDD 355 (503)
T ss_dssp HHHHHHHHHHHHHHHH-----HTSEECCC-----------CCCCCHHHHHHHHHHHHHHHTTHHHHHHHHTCCTTCCGGG
T ss_pred HHHHHHHHHHHHHHhc-----cceeeccccCCCCCCCCCccccCcHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccc
Confidence 9999999999999995 99999995 6899999999999999999999999999999988888888899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhh-hhh-----ccc-ccChHHHHHHHHH-HHHc---
Q psy10160 458 PLIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLML-VTA-----LNP-HIGYDKAAKIAKT-AHKE--- 526 (558)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~-~~~-----la~-~l~~~~a~~~~~~-a~~~--- 526 (558)
+..++..++++..+.++++.++..++++|+||++||+++++.++++ +|+ |.. .++|++||+++++ |.+.
T Consensus 356 s~~~~~~l~~~~~~~~~~l~~~~~~l~gL~vn~erm~~~l~~s~~~~ate~v~~~lv~~G~~~~~Ah~~v~~~a~~~g~~ 435 (503)
T 2j91_A 356 SANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASV 435 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHHHHHHHHHHHHHHHSHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhH
Confidence 9999999999999999999999999999999999999999987654 444 333 4788999997643 3322
Q ss_pred ------CCCHHHHHHHcCC--CCHHHHhhhcCcccccCC
Q psy10160 527 ------GTTLKVAALKLGY--LTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 527 ------~~~~~~~~~~~~~--l~~~~~~~~~~p~~~~~~ 557 (558)
...+.|.+..... +++++++++|||+.|+|.
T Consensus 436 V~~~~~~~~l~e~l~~~~~~~l~~eel~~~ldp~~~~g~ 474 (503)
T 2j91_A 436 VKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGR 474 (503)
T ss_dssp HHHSCCCCCHHHHHHHCGGGHHHHTTHHHHTCGGGGSTT
T ss_pred HHHHHhcccHHHHHhcCcccCCCHHHHHHhcCHHHhCCc
Confidence 2367776665544 568899999999999986
|
| >1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=400.24 Aligned_cols=284 Identities=18% Similarity=0.125 Sum_probs=234.5
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchh-------hhhhhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRA-------VEAEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~-------l~~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|.|.+++|+..++.. ...+..+..+... +.....+ ++++|.||||+|+|+|+|+||++++ |++.|.
T Consensus 87 g~~vH~g~SsnD~~~Ta~~-l~~r~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~-~~~~l~ 164 (403)
T 1dof_A 87 CRYVHYGATSNDIIDTAWA-LLIRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWAEPITLGFKFAN-YYYELY 164 (403)
T ss_dssp CSCTTTTCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHHH
T ss_pred CCcccCCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccCcccccCcHHHHHHH-HHHHHH
Confidence 5678888888888877754 3333333222222 2223333 8899999999999999999999998 999999
Q ss_pred chHHHHHhHh---hhhhhhcCCCCChhH---HHHHHHHHHhHhCCCcccCCChhHHhh-cCcHHHHHHHHHHHHHHHHHH
Q psy10160 313 PNDRQALNIV---SIFYFTYLVKLSELL---ETKCAAKIAELTGLPFKSAPNKFEALA-AHDALVEVSGALNTVAVSLMK 385 (558)
Q Consensus 313 ~~~~~l~~~~---~~~~~~g~~g~~~~~---~~~~~~~~a~~lg~~~~~~~~~~~~~~-~~d~~~~~~~~l~~~~~~l~k 385 (558)
|+ +||+++. ..+++||++||+.++ ++.+++++++.|||+.+..+| +. +||+++|++++|+.++++|+|
T Consensus 165 r~-~rL~~~~~~~~~~~lGgAvGt~~~~~~~~~~~~~~~a~~lGl~~~~~~~----~~~~rD~~~e~~~~l~~~a~~L~k 239 (403)
T 1dof_A 165 IA-CRQLALAEEFIRAKIGGAVGTMASWGELGLEVRRRVAERLGLPHHVITT----QVAPRESFAVLASALALMAAVFER 239 (403)
T ss_dssp HH-HHHHHHHHHHCCBCCCCTTSSCGGGGGGHHHHHHHHHHHTTCCBCSSCS----SSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHhcccCccHHHhhCcccccccHHHHHHHHHHhCcCCCCCcc----hhhccHHHHHHHHHHHHHHHHHHH
Confidence 99 9998776 456677899999988 678999999999999877665 67 999999999999999999999
Q ss_pred HhhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHH
Q psy10160 386 IANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVL 465 (558)
Q Consensus 386 ~a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (558)
||+||++|+ ++||||+.+| + +|||||||||||+.+|++++++++++|++.+++.. ..+++++|...|...|..+
T Consensus 240 ia~Dl~ll~---~~e~~ei~lp-~-~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~-~~~~~erd~~~~~~~~~~l 313 (403)
T 1dof_A 240 LAVEIRELS---RPEIGEVVEG-G-GGSSAMPHKANPTASERIVSLARYVRALTHVAFEN-VALWHERDLTNSANERVWI 313 (403)
T ss_dssp HHHHHHHHT---STTTCSEESC-C----------CCCHHHHHHHHHHHHHHHHHHHHHHT-TCCCTTCCGGGHHHHHHHH
T ss_pred HHHHHHHHh---CCccCeEeCC-C-CccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHc-CcccccccccchHHHHHHH
Confidence 999999999 5999999999 8 99999999999999999999999999999988654 4578999999998888899
Q ss_pred HHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhh------hhcccc-cChHHHHHHHH----HHHHcCC-CHHHH
Q psy10160 466 RSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLV------TALNPH-IGYDKAAKIAK----TAHKEGT-TLKVA 533 (558)
Q Consensus 466 ~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~------~~la~~-l~~~~a~~~~~----~a~~~~~-~~~~~ 533 (558)
+++..+...++.++.+++++|+||++||+++++.+.+++ +.|++. +||++||++++ +|.++|+ +++|+
T Consensus 314 ~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~a~~l~~~L~~~gig~~~A~~iv~~~~~~a~~~g~~~l~e~ 393 (403)
T 1dof_A 314 PEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAYKKAKEVKALTFEYQKWPVERL 393 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHCHHHHHHHHHHTTCCHHHHHHHHTTCCCCCCGGGGCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHhccCHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCcCHHHH
Confidence 899888888889999999999999999999998666554 777776 99999999865 7778998 99998
Q ss_pred HHHc
Q psy10160 534 ALKL 537 (558)
Q Consensus 534 ~~~~ 537 (558)
+.+.
T Consensus 394 ~~~~ 397 (403)
T 1dof_A 394 IEDA 397 (403)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
|
| >1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=409.78 Aligned_cols=308 Identities=12% Similarity=0.094 Sum_probs=231.0
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|.|.|+++..+++.. ...+..+..+...+.. ...+ ++++|.||||+|+|+|+|+||++++ |++.|.
T Consensus 99 ~~~iH~G~TS~Di~~ta~~-L~lr~~l~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~-~~~~l~ 176 (478)
T 1yis_A 99 AGIIHLGATSCFVQDNADL-IAYRDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVL-WAQELL 176 (478)
T ss_dssp GGGTTTTCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHHH
T ss_pred hhheeCCCchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeecccCCccceeccHHHHHHH-HHHHHH
Confidence 6788999999988887765 4444444333333222 2233 7899999999999999999999998 999999
Q ss_pred chHHHHHhHhhhhh---hhcCCCCChhHHH----------HHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHH
Q psy10160 313 PNDRQALNIVSIFY---FTYLVKLSELLET----------KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTV 379 (558)
Q Consensus 313 ~~~~~l~~~~~~~~---~~g~~g~~~~~~~----------~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~ 379 (558)
|+++||+++..++. ++|++||++++++ .+.+++++.|||+. ...++. |+++||+++|++++|+.+
T Consensus 177 rd~~rL~~~~~~l~~lg~gg~~GT~a~~~~~f~~d~~~~~~v~~~~a~~LG~~~-~~~~s~-~~~~rd~~~e~~~~l~~~ 254 (478)
T 1yis_A 177 MAFQSLSEFRDKMRFRGIKGATGTQDSFLTLFAGDESKVEALDELVTKKANFSN-RFLITG-QTYSRQQDSQLVFSLSLL 254 (478)
T ss_dssp HHHHHHHHHHHHCCBCCSCTTTSSCHHHHHHTTTCHHHHHHHHHHHHHHTTCSC-BCSSCS-SSCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccchhccchhhhcccCcchhhHHHHHHHHHHHhCcCC-CCCccc-cccCChHHHHHHHHHHHH
Confidence 99999997776554 5678999988753 45599999999993 334443 799999999999999999
Q ss_pred HHHHHHHhhhhhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccch
Q psy10160 380 AVSLMKIANDIRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFK 457 (558)
Q Consensus 380 ~~~l~k~a~d~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (558)
+++|+|||+||++|+| +||+.+|+ +++|||||||||||+.+|+++++|++++|++++++..++..++|+|...
T Consensus 255 a~~L~kia~Di~ll~s-----~~el~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~er~~~~ 329 (478)
T 1yis_A 255 GAAAKKVCTDIRVLQA-----FGELLEPFEKDQIGSSAMPYKKNPMKSERCCALSRKLINAPQEALTILADQGLERTLDD 329 (478)
T ss_dssp HHHHHHHHHHHHHHHH-----TTSEECC-------------CCCCHHHHHHHHHHHHHHTSHHHHHHHHHTCCTTCCGGG
T ss_pred HHHHHHHHHHHHHHhh-----hhheeccccCCCCccccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHhccCCcccCcch
Confidence 9999999999999995 99999994 6899999999999999999999999999999988888888899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhh-hhh-----ccc-ccChHHHHHHHHH--------
Q psy10160 458 PLIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLML-VTA-----LNP-HIGYDKAAKIAKT-------- 522 (558)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~-~~~-----la~-~l~~~~a~~~~~~-------- 522 (558)
+..++..++++..+.++++.++..|+++|+||++||+++++.++++ +|+ |.. .++|++||+++++
T Consensus 330 ~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~~~~~~~te~v~~~l~~~G~~~~~Ah~~v~~~a~~~~~~ 409 (478)
T 1yis_A 330 SAGRRMLIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAMMMLTEEGVDRQQAHAVIRKTALEAKQL 409 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhCCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987644 444 333 3677999997643
Q ss_pred HHHcCCCHHHHHHHcCC-CCHHHHhhhc-CcccccCC
Q psy10160 523 AHKEGTTLKVAALKLGY-LTEEEFNKWV-VPEDMLGP 557 (558)
Q Consensus 523 a~~~~~~~~~~~~~~~~-l~~~~~~~~~-~p~~~~~~ 557 (558)
+.++|++++++..+... +++++++++| ||..|+|.
T Consensus 410 v~~~g~~~~~l~~~~~~~l~~~el~~~l~dp~~~~g~ 446 (478)
T 1yis_A 410 QATQKVDIRQTMADPFFDSVRDRVVGLVNNPINFTGR 446 (478)
T ss_dssp ---------CCCTTTTSTTTHHHHHHHHHCGGGGSTT
T ss_pred HHHcCCCHHHHhcCCCCCCCHHHHHHHHhCHHHHcCc
Confidence 22567775444333333 7899999999 99999986
|
| >4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-49 Score=401.49 Aligned_cols=305 Identities=18% Similarity=0.137 Sum_probs=238.6
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhh-------hhhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVE-------AEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~-------~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|.|.+++|+..++.. ...+.....+...+. ....+ ++++|.||||+|+|+|+|+||++++ |++.|.
T Consensus 85 ~~~iH~G~SsnDv~~Ta~~-L~lr~~~~~l~~~L~~l~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~-~~~~l~ 162 (438)
T 4eei_A 85 GKFFHFGVTSSDIIDSALS-LQIRDSMSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSFGQKFLG-AYVEFK 162 (438)
T ss_dssp TTTTTCSCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEETHHHHHH-HHHHHH
T ss_pred hcccCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccCccCCchhHHHHHHH-HHHHHH
Confidence 6688999999988887765 333333322322222 22233 7899999999999999999999998 999999
Q ss_pred chHHHHHhHhhhh---hhhcCCCCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhhh
Q psy10160 313 PNDRQALNIVSIF---YFTYLVKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAND 389 (558)
Q Consensus 313 ~~~~~l~~~~~~~---~~~g~~g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~d 389 (558)
|+++||+++..++ +++|++||+..+++.+++++++.|||+..+.. +++++||+++|++++|+.++++|+|||+|
T Consensus 163 r~~~rL~~~~~~~~~~~lgGAvGT~~~~~~~~~~~~a~~LG~~~~~~~---~~v~~rD~~~e~~~~l~~~a~~L~kia~D 239 (438)
T 4eei_A 163 RRLKDLKDFQKDGLTVQFSGAVGNYCILTTEDEKKAADILGLPVEEVS---TQVIPRDRIAKLISIHGLIASAIERLAVE 239 (438)
T ss_dssp HHHHHHHHHHHTTCCBCCCCTTSCCSSSCHHHHHHHHHHHTCCBCSSC---SSSCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhcCccHhhCcccccHHHHHHHHHHcCCCCCCcc---ccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887554 55678999999888889999999999854333 47899999999999999999999999999
Q ss_pred hhhhccCCCccccceecC--CCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHH
Q psy10160 390 IRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRS 467 (558)
Q Consensus 390 ~~~~~s~~~~e~~e~~~~--~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (558)
|++|+ ++||||+.+| ++++|||||||||||+.+|+++++|++++|++.+++ .....+++++...+..+|..+++
T Consensus 240 i~ll~---~~e~gel~~~f~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~-~~~~~~~erdl~~~~~er~~l~~ 315 (438)
T 4eei_A 240 IRHLH---RSDVFEVYEGFSKGQKGSSTMPHKKNPISTENLTGMARMLRSHVSIAL-ENCVLWHERDISHSSAERFYLPD 315 (438)
T ss_dssp HHHHH---STTTCSEECCC------------CCCCHHHHHHHHHHHHHHHHHHHHH-HTTCCCTTCCSHHHHHHHHHHHH
T ss_pred HHHHh---ccccceeccccccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-hccchhcCccchhhHHHHHHHHH
Confidence 99999 5999999998 469999999999999999999999999999986553 34455689998888888999999
Q ss_pred HHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhH--hhhhhcccc-----cChHHHHHH----HHHHHHcCCCHHHHHHH
Q psy10160 468 IRLIADSATAFTDKCVSGIVANEENIHRLLHESL--MLVTALNPH-----IGYDKAAKI----AKTAHKEGTTLKVAALK 536 (558)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~--~~~~~la~~-----l~~~~a~~~----~~~a~~~~~~~~~~~~~ 536 (558)
+..+.++++.++.+++++|+||+++|+++++.++ +++++++.. ++|++||++ +++|.+ |++++|++.+
T Consensus 316 ~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~~~~~~~a~~~a~~Lv~~g~~~~~Ah~~v~~~~~~a~~-g~~l~e~~~~ 394 (438)
T 4eei_A 316 NFGIMVYALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHFLVANTPFMREDCYKIVQQVAFDLKQ-GESFSKKLQK 394 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHCCTTHHHHHHHHHHHHSSCCHHHHHHHHHHC--------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CCCHHHHHHH
Confidence 9999999999999999999999999999998644 455566543 699999986 456777 9999999886
Q ss_pred c------C--CCCHHHHhhhcCcccccCC
Q psy10160 537 L------G--YLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 537 ~------~--~l~~~~~~~~~~p~~~~~~ 557 (558)
. . .++++++++++| .+.|.
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~d--~~gG~ 421 (438)
T 4eei_A 395 VMHDEHNIILDIPEMDFEGIKK--TYLKE 421 (438)
T ss_dssp HHHHTTCCCCCCCCCSHHHHHH--HHTTT
T ss_pred HHhhhhccccCCCHHHHHHHHH--hcCCc
Confidence 2 2 467888999998 66654
|
| >2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=406.21 Aligned_cols=305 Identities=19% Similarity=0.165 Sum_probs=243.3
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhh-------hhhhh-hhh--hhcccccchhhhhhhHHHhhccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVE-------AEAAA-ADK--KRRSRRSLSVVNKWSLRQAFTTCYPVN 310 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~-------~~~~~-~~~--~~~grth~q~a~~~t~g~~~~~~~~~~ 310 (558)
+.++|.|.+++|+..++.. ...+..+..+...+. ....+ +++ +|.||||+|+|+|+|+||++++ |++.
T Consensus 101 g~~vH~g~SsnDv~~Ta~~-l~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~~~GrTHlQ~A~P~T~G~~~~~-~~~~ 178 (462)
T 2e9f_A 101 GGKLHTARSRNDQVATDLR-LYLRGAIDELLALLLALRRVLVREAEKHLDPLYVLPGYTHLQRAQPVLLAHWFLA-YYEM 178 (462)
T ss_dssp HHHHTTTCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCEEEEEETTEEEEEEEHHHHHHH-HHHH
T ss_pred ccceecCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCccccCcccCccCeeccHHHHHHH-HHHH
Confidence 4668888888888777655 333333333332222 22233 789 9999999999999999999998 9999
Q ss_pred ccchHHHHHhHhhhhhh---hcCCCCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHh
Q psy10160 311 LDPNDRQALNIVSIFYF---TYLVKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIA 387 (558)
Q Consensus 311 l~~~~~~l~~~~~~~~~---~g~~g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a 387 (558)
|.|+++||+++..+++. ||++.++.++ +.+++++++.|||+ .+..|++||+++||+++|++++|+.++++|+|||
T Consensus 179 l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~-~~~~~~~a~~LG~~-~~~~n~~~~~~~rD~~~e~~~~l~~~a~~L~kia 256 (462)
T 2e9f_A 179 LKRDAGRLEDAKERLNESPLGAAALAGTGF-PIDRHFTARELGFK-APMRNSLDAVASRDFALEVLSALNIGMLHLSRMA 256 (462)
T ss_dssp HHHHHHHHHHHHHHHCEECTTCCSSSCCSS-CCCHHHHHHHTTCS-EECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCccccccccCCC-CCCHHHHHHHhCCC-CCCCCcHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988766544 4442122223 24678999999999 7889999999999999999999999999999999
Q ss_pred hhhhhhccCCCccccceecCCCC-CCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccc--cccccccchhhHHHHH
Q psy10160 388 NDIRFLASGPRCGLGELSLPENE-PGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSN--GHFELNVFKPLIVSNV 464 (558)
Q Consensus 388 ~d~~~~~s~~~~e~~e~~~~~~~-~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 464 (558)
+||++|+| .|||||.+|+.+ +|||||||||||+.+|++++++++++|++.+++..+.+ .+++++...+ ...+
T Consensus 257 ~Dl~ll~s---~e~g~iel~e~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~~rDl~~~--~~~l 331 (462)
T 2e9f_A 257 EELILYST---EEFGFVEVPDAFATGSSIMPQKKNPDILELIRAKAGRVLGAFVGLSAVVKGLPLAYNKDLQED--KEPL 331 (462)
T ss_dssp HHHHHHTS---TTTCCEECCGGGCEECSSSSSCEECHHHHHHHHTHHHHHHHHHHHHHHHTTCCSSBCGGGGGG--HHHH
T ss_pred HHHHHHhC---CCCCcEEecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCchHhhhchhhh--HhHH
Confidence 99999998 669999999875 59999999999999999999999999999999765554 3344444333 2345
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhccccc-----ChHHHHH----HHHHHHHcCCCHHHHHH
Q psy10160 465 LRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHI-----GYDKAAK----IAKTAHKEGTTLKVAAL 535 (558)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l-----~~~~a~~----~~~~a~~~~~~~~~~~~ 535 (558)
++++..+..++ ..+..++++|+||++||+++++.+++++|+|++.| ||++||+ ++++|.++|++++|++.
T Consensus 332 ~~s~~~~~~~l-~~~~~~l~gl~vn~e~m~~~l~~~~~~at~l~~~Lv~~G~~~r~ay~~v~~~~~~a~~~g~~l~e~~~ 410 (462)
T 2e9f_A 332 LDALATYRDSL-RLLAALLPGLKWRRERMWRAAEGGYTLATELADYLAEKGLPFREAHHVVGRLVRRLVEEGRALKDLTL 410 (462)
T ss_dssp HHHHHHHHHHH-HHHHHHGGGCEECHHHHHHHHSCSSTTHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHTTCCGGGCCH
T ss_pred HHHHHHHHHHH-HHHHHHhCcCEECHHHHHHHHhcCccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 55555555555 55556999999999999999999999999999876 6777765 56788899999999776
Q ss_pred Hc-----CCCCHHHHhhhcCcccccC
Q psy10160 536 KL-----GYLTEEEFNKWVVPEDMLG 556 (558)
Q Consensus 536 ~~-----~~l~~~~~~~~~~p~~~~~ 556 (558)
+. +.|+ +++++++||+.|++
T Consensus 411 ~~~~~~~~~l~-~~l~~~ldp~~~~~ 435 (462)
T 2e9f_A 411 EELQAHHPLFA-EDALPLLRLETAIH 435 (462)
T ss_dssp HHHHHHCTTCC-GGGGGGGSHHHHTT
T ss_pred HHHHHhhhhhH-HHHHHhCCHHHHHh
Confidence 65 7787 68999999999984
|
| >2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-49 Score=404.84 Aligned_cols=305 Identities=14% Similarity=0.095 Sum_probs=255.7
Q ss_pred ceeeecccceeEEEEeccCCCCCCCccc-ccchhhh-------hhhhh-hhhhhcccccchhhhhhhHHHhhcccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGP-HIKRAVE-------AEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNL 311 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~-w~~~~l~-------~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l 311 (558)
+.++|.|.+++|+..++.. ...+..+. .+...+. ....+ ++++|.||||+|+|+|+|+||++++ |++.|
T Consensus 114 ~~~vH~g~SsnDv~~Ta~~-L~lr~~l~~~l~~~L~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~-~~~~l 191 (462)
T 2ptr_A 114 SEFIHFACTSEDINNLSHA-LMLKTARDEVILPYWRQLIDGLKDLAVQYRDIPLLSRTAGQPATPSTIGKEMAN-VAYRM 191 (462)
T ss_dssp GGGTTTTCCHHHHHHHHHH-HHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHH
T ss_pred hhhccCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeeccccCeeceechHHHHHHH-HHHHH
Confidence 5678999998888887765 33343333 2332222 23233 8899999999999999999999998 99999
Q ss_pred cchHHHHHhHhhhhhhhcCCCCChhHH--------HHHHHHHHhHhCCCcccCCChhH-HhhcCcHHHHHHHHHHHHHHH
Q psy10160 312 DPNDRQALNIVSIFYFTYLVKLSELLE--------TKCAAKIAELTGLPFKSAPNKFE-ALAAHDALVEVSGALNTVAVS 382 (558)
Q Consensus 312 ~~~~~~l~~~~~~~~~~g~~g~~~~~~--------~~~~~~~a~~lg~~~~~~~~~~~-~~~~~d~~~~~~~~l~~~~~~ 382 (558)
.|+++||+++...++++|++||+.++. +.+.+.+++.|||. .|++| ++++||+++|++++|+.++++
T Consensus 192 ~r~~~rL~~~~~~~~~~GAvGT~~~~~~~~~~~~~~~v~~~~~~~LGl~----~n~~~~~~~~rD~~~e~~~~l~~~a~~ 267 (462)
T 2ptr_A 192 ERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQ----WNPYTTQIEPHDYIAELFDCVARFNTI 267 (462)
T ss_dssp HHHHHHHHHCCCEECCCCTTSSCHHHHHHCTTSCHHHHHHHHHHHTTCE----ECCCCSSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhcchhhcccccCcccHHHHHHHHHHHhCCC----CCchhhhhcCCHHHHHHHHHHHHHHHH
Confidence 999999998877778889999998543 45778888889995 56677 699999999999999999999
Q ss_pred HHHHhhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHH
Q psy10160 383 LMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVS 462 (558)
Q Consensus 383 l~k~a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (558)
|+|||+||++|+|+|+ |+| ..|++++|||||||||||+.+|++++.+++++|++..++..+..+++++|...|..++
T Consensus 268 L~kia~Dl~ll~s~~~--~~E-~~~~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~erd~~~~~~~~ 344 (462)
T 2ptr_A 268 LIDFDRDVWGYIALNH--FKQ-KTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDSTVLR 344 (462)
T ss_dssp HHHHHHHHHHHHHTTS--EEE-CCCTTCCSCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCTHHHHHGG
T ss_pred HHHHHHHHHHHhCCcc--hhc-cCCCCCCcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccHHHH
Confidence 9999999999999766 666 4566899999999999999999999999999999998877666678999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhh-----hcccccChHHHHHHHHHHHH----cCCCHHHH
Q psy10160 463 NVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVT-----ALNPHIGYDKAAKIAKTAHK----EGTTLKVA 533 (558)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~-----~la~~l~~~~a~~~~~~a~~----~~~~~~~~ 533 (558)
.++.++..+..++..+. .++++|+||++||+++++.+++++| .|++. ||++||++++++.. +|++++|+
T Consensus 345 ~l~~~~~~~~~~l~~~~-~~l~gl~vn~e~m~~~l~~~~~~~te~~~~~l~~~-G~~~A~~iv~~~~~~~~~~~~~l~e~ 422 (462)
T 2ptr_A 345 NLGVGIGYALIAYQSTL-KGVSKLEVNRDHLLDELDHNWEVLAEPIQTVMRRY-GIEKPYEKLKELTRGKRVDAEGMKQF 422 (462)
T ss_dssp GHHHHHHHHHHHHHHHH-HHHHHEEECHHHHHHHHTTCGGGGHHHHHHHHHHT-TCSSHHHHHHHC-----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHCcCEECHHHHHHHHHcCCchHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 88888888888877666 6999999999999999999999888 55564 99999999988766 88899999
Q ss_pred HHHcCCC--CHHHHhhhcCcccccCC
Q psy10160 534 ALKLGYL--TEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 534 ~~~~~~l--~~~~~~~~~~p~~~~~~ 557 (558)
+.+.+.. .+++++ +|||++|+|.
T Consensus 423 ~~~~~~~~~~~~~l~-~ldp~~~~~~ 447 (462)
T 2ptr_A 423 IDGLALPEEEKARLK-AMTPANYIGR 447 (462)
T ss_dssp HHTSSSCHHHHHHHH-TCCGGGCCTT
T ss_pred HHhcCCCcccHHHHH-hCCHHHHhCh
Confidence 9876622 367899 9999999986
|
| >1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-49 Score=403.07 Aligned_cols=303 Identities=15% Similarity=0.132 Sum_probs=240.6
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhh-------hhhhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAV-------EAEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l-------~~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|.|.+++|+..++.. ...+..+..+...+ .....+ ++++|.||||+|+|+|+|+||++++ |++.|.
T Consensus 100 g~~vH~g~SsnD~~~Ta~~-l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~-~~~~l~ 177 (457)
T 1tj7_A 100 GKKLHTGRSRNDQVATDLK-LWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLA-YVEMLA 177 (457)
T ss_dssp GGGTTTTCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHHH
T ss_pred ccceecCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCcCCeechHHHHHHH-HHHHHH
Confidence 5678888888888777654 33333333333222 223333 8899999999999999999999998 999999
Q ss_pred chHHHHHhHhhhhhh---hcC--CCCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHh
Q psy10160 313 PNDRQALNIVSIFYF---TYL--VKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIA 387 (558)
Q Consensus 313 ~~~~~l~~~~~~~~~---~g~--~g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a 387 (558)
|+++||+++..+++. ||+ +|++ + +.+++++++.|||+ .+..|++||+++||+++|++++|+.++++|+|||
T Consensus 178 r~~~rL~~~~~~~~~~~lGgaA~aGt~--~-~~~~~~la~~LGl~-~~~~n~~~~~~~rD~~~e~~~~l~~~a~~L~kia 253 (457)
T 1tj7_A 178 RDESRLQDALKRLDVSPLGCGALAGTA--Y-EIDREQLAGWLGFA-SATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFA 253 (457)
T ss_dssp HHHHHHHHHHHHHCCBCTTCTTTTCCS--S-CCCHHHHHHHHTCS-SBCSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCccccccCCCC--C-CCCHHHHHHHcCCC-CCCCChHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988866655 444 2333 2 24578999999999 6889999999999999999999999999999999
Q ss_pred hhhhhhccCCCccccceecCCCC-CCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccc--cccccccchhhHHHHH
Q psy10160 388 NDIRFLASGPRCGLGELSLPENE-PGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSN--GHFELNVFKPLIVSNV 464 (558)
Q Consensus 388 ~d~~~~~s~~~~e~~e~~~~~~~-~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 464 (558)
+||++|+| .|||||++|+.+ +|||||||||||+.+|++++++++++|++.+++..+.+ .+++++... .+..
T Consensus 254 ~Di~ll~s---~e~g~iel~e~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~~RDl~~---~~~~ 327 (457)
T 1tj7_A 254 EDLIFFNT---GEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQE---DKEG 327 (457)
T ss_dssp HHHHHHTS---TTTCCEECCGGGCBCCTTCTTCCBCHHHHHHHHTHHHHHHHHHHHHHHHTTCCSSCCGGGGG---HHHH
T ss_pred HHHHHHhC---CCCCceeccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHhhcchhh---HHhH
Confidence 99999998 679999999875 79999999999999999999999999999999766655 234444332 3344
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhccccc---C--hHHHHH----HHHHHHHcCCCHHHHHH
Q psy10160 465 LRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHI---G--YDKAAK----IAKTAHKEGTTLKVAAL 535 (558)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l---~--~~~a~~----~~~~a~~~~~~~~~~~~ 535 (558)
+++...+...++..+..++++|+||++||++++..+++++|+|++.| | |++||+ ++++|.++|++++|++.
T Consensus 328 l~~s~~~~~~~l~~~~~~l~gl~vn~~~m~~~l~~~~~~at~l~~~Lv~~G~~~r~Ay~~v~~~~~~a~~~g~~l~e~~~ 407 (457)
T 1tj7_A 328 LFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPL 407 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHTSTTTTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhcCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 44554444555555666999999999999999999999999998766 4 777776 56778889999999776
Q ss_pred Hc-C---CCCHHHHhhhcCccccc
Q psy10160 536 KL-G---YLTEEEFNKWVVPEDML 555 (558)
Q Consensus 536 ~~-~---~l~~~~~~~~~~p~~~~ 555 (558)
+. . .+.++++++++||+.++
T Consensus 408 ~~~~~~~~~~~~~l~~~ldp~~~v 431 (457)
T 1tj7_A 408 SELQKFSQVIDEDVYPILSLQSCL 431 (457)
T ss_dssp HHHTTTCTTCCTTHHHHTSHHHHH
T ss_pred HHHHHHhhhcHHHHHHhCCHHHHH
Confidence 54 2 13467899999999887
|
| >1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-49 Score=403.24 Aligned_cols=304 Identities=15% Similarity=0.144 Sum_probs=241.8
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhh-------hhhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVE-------AEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~-------~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|.|.+++|+..++.. ...+..+..+...+. ....+ ++++|.||||+|+|+|+|+||++++ |++.|.
T Consensus 106 g~~vH~g~SsnDv~~Ta~~-l~lr~~l~~l~~~L~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~-~~~~l~ 183 (468)
T 1k7w_A 106 AGKLHTGRSRNDQVVTDLK-LFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLS-HAVALT 183 (468)
T ss_dssp GGGGGTTCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHHH
T ss_pred ccceecCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeeccccCcCCccchHHHHHHH-HHHHHH
Confidence 5678998888888887755 333333333333222 22233 7899999999999999999999998 999999
Q ss_pred chHHHHHhHhhhhhh---hcCCCCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhhh
Q psy10160 313 PNDRQALNIVSIFYF---TYLVKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAND 389 (558)
Q Consensus 313 ~~~~~l~~~~~~~~~---~g~~g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~d 389 (558)
|+++||+++..+++. ||++.++.++ +.+++++++.|||+ .+..|++||+++||+++|++++|+.++++|+|||+|
T Consensus 184 r~~~rL~~~~~~~~~~~lGgaA~aGt~~-~~~~~~la~~LG~~-~~~~n~~~~~~~rD~~~e~~~~l~~la~~L~kia~D 261 (468)
T 1k7w_A 184 RDSERLGEVKKRINVLPLGSGALAGNPL-DIDREMLRSELEFA-SISLNSMDAISERDFVVEFLSFATLLMIHLSKMAED 261 (468)
T ss_dssp HHHHHHHHHHHHHSEECTTCTTTTCCTT-CCCHHHHHHHHTCS-EECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcccccccCCCC-CCChHHHHHHcCCC-CCCCChHHHHHccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988766554 4442122222 25679999999999 788999999999999999999999999999999999
Q ss_pred hhhhccCCCccccceecCCCC-CCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccc--cccccccchhhHHHHHHH
Q psy10160 390 IRFLASGPRCGLGELSLPENE-PGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSN--GHFELNVFKPLIVSNVLR 466 (558)
Q Consensus 390 ~~~~~s~~~~e~~e~~~~~~~-~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 466 (558)
|++|+| .|||||++|+.+ +|||||||||||+.+|++++++++++|++.+++..+.+ .+++++...+ ...+++
T Consensus 262 l~ll~s---~e~g~iel~e~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~~rDl~~~--~~~l~~ 336 (468)
T 1k7w_A 262 LIIYST---SEFGFLTLSDAFSTGASLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDLQED--KEAVFD 336 (468)
T ss_dssp HHHHTS---TTTCCEECCGGGCEEETTEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCGGGGGH--HHHHHH
T ss_pred HHHHhC---CCCCceeccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCCchHhhhhhhhh--HhHHHH
Confidence 999998 669999999875 59999999999999999999999999999999766554 2344444332 234555
Q ss_pred HHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhccccc-----ChHHHHH----HHHHHHHcCCCHHHHHHHc
Q psy10160 467 SIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHI-----GYDKAAK----IAKTAHKEGTTLKVAALKL 537 (558)
Q Consensus 467 ~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l-----~~~~a~~----~~~~a~~~~~~~~~~~~~~ 537 (558)
++..+..++ ..+..++++|+||++||+++++.+ +++|+|++.| +|++||+ ++++|.++|++++|++.+.
T Consensus 337 s~~~~~~~l-~~~~~~l~gl~vn~e~m~~~l~~~-~~at~l~~~Lv~~G~~~r~ay~~v~~~~~~a~~~g~~l~e~~~~~ 414 (468)
T 1k7w_A 337 VVDTLTAVL-QVATGVISTLQISKENMEKALTPE-MLATDLALYLVRKGVPFRQAHTASGKAVHLAETKGITINKLSLED 414 (468)
T ss_dssp HHHHHHHHH-HHHHHHHHHCEECHHHHHHTCCGG-GGHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHTTTCCGGGCCHHH
T ss_pred HHHHHHHHH-HHHHHHhCCCEECHHHHHHHhhCC-ChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 555555555 555569999999999999999999 9999998765 6677765 5677888999999987665
Q ss_pred -----CCCCHHHHhhhcCcccccC
Q psy10160 538 -----GYLTEEEFNKWVVPEDMLG 556 (558)
Q Consensus 538 -----~~l~~~~~~~~~~p~~~~~ 556 (558)
+.|+ +++++++||+.|+.
T Consensus 415 ~~~~~~~l~-~~~~~~ldp~~~~~ 437 (468)
T 1k7w_A 415 LKSISPQFS-SDVSQVFNFVNSVE 437 (468)
T ss_dssp HHHHCTTCC-GGGGGGSCHHHHHT
T ss_pred HHHHHHhhH-HHHHHhCCHHHHHh
Confidence 7776 68999999999884
|
| >2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-47 Score=389.37 Aligned_cols=305 Identities=15% Similarity=0.115 Sum_probs=236.3
Q ss_pred ceeeecccceeEEEEeccCCCCCCCccc-ccchhhh-------hhhhh-hhhhhcccccchhhhhhhHHHhhcccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGP-HIKRAVE-------AEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNL 311 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~-w~~~~l~-------~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l 311 (558)
+.++|.|.+++|+..++.. ...+..+. .+...+. ....+ ++++|.||||+|+|+|+|+||++++ |++.|
T Consensus 113 ~~~iH~g~SsnDv~~Ta~~-L~lr~~l~~~l~~~L~~l~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~-~~~~l 190 (465)
T 2qga_B 113 KEYVHYLCTSEDINNVAYA-TCLKACLNDVVIPCLEKIMLKLKDLAVEYSHVPLLSRTHGQPASSTTFGKEMAN-FYARI 190 (465)
T ss_dssp GGGTTTTCCHHHHHHHHHH-HHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHH
T ss_pred hhhccCCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEeeccccCcccccchHHHHHHH-HHHHH
Confidence 6789999999998888765 44444443 2332222 22233 8899999999999999999999998 99999
Q ss_pred cchHHHHHhHhhhhhhhcCCCCChhHH---H------HHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHH
Q psy10160 312 DPNDRQALNIVSIFYFTYLVKLSELLE---T------KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVS 382 (558)
Q Consensus 312 ~~~~~~l~~~~~~~~~~g~~g~~~~~~---~------~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 382 (558)
.|+++||+++.....++|++||++++. + ..++.+++.|||+..+.. +++++||+++|++++|+.++++
T Consensus 191 ~r~~~rL~~~~~~~~~~GAvGT~~a~~~~~p~~d~~~~~~~~~~~~LGl~~~~~~---~~~~~rD~~~e~~~~l~~~a~~ 267 (465)
T 2qga_B 191 HHHVGVIRRVKVCAKFNGAVGNFNAHKVASKDTDWVNTIGLFLKKHFNLTYSIYC---TQIQDHDYICELCDGLARANGT 267 (465)
T ss_dssp HHHHHHHHHSCCEECCCCTTSSCHHHHHHCTTCCHHHHHHHHHHHHHCCEECCCC---SSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccchhcCccccccccCcccHHHHHHHHHHHHhCCCCCCCc---cchhccHHHHHHHHHHHHHHHH
Confidence 999999998886667788999987554 2 345555556999866544 5799999999999999999999
Q ss_pred HHHHhhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHH
Q psy10160 383 LMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVS 462 (558)
Q Consensus 383 l~k~a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (558)
|+|||+||++|+| .|+.+...+++++|||||||||||+.+|++++.++.+.+....++..+..++++++...+..++
T Consensus 268 L~kia~Di~ll~s---~~~~~e~~~~~~~GSSiMP~K~NP~~~e~~~g~~~~~~~~~~~~~~~l~~~~~erdl~~s~~~r 344 (465)
T 2qga_B 268 LIDLCVDIWLYIS---NNLLKLKVKEKEVGSSTMPHKVNPIDFENAEGNLHIANAFFKLFSSKLPTSRLQRDLSDSTVLR 344 (465)
T ss_dssp HHHHHHHHHHHHH---TTSEEEC-------CCSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTBCTHHHHHHT
T ss_pred HHHHHHHHHHHhC---CcceeeeCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhh
Confidence 9999999999997 5665555566899999999999999999999999999999887776665567888877776566
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhh-----hhcccccChHHHHHHHHHHHHcCC-----CHHH
Q psy10160 463 NVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLV-----TALNPHIGYDKAAKIAKTAHKEGT-----TLKV 532 (558)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~-----~~la~~l~~~~a~~~~~~a~~~~~-----~~~~ 532 (558)
.++..+..+..++ ..+.+++++|+||+++|+++++.+++++ +.|++. ||++||++++++.. +. ++.+
T Consensus 345 ~l~~~~~~~~~~l-~~~~~~l~~l~vn~~~m~~~l~~~~~~~ae~v~~~L~~~-G~~~A~~iv~~~~~-~~~~~~~~l~~ 421 (465)
T 2qga_B 345 NIGSSLAYCLIAY-KSVLKGLNKIDIDRRNLEEELNQNWSTLAEPIQIVMKRH-NYVDAYEELKQFTR-GKVIDQKIMQE 421 (465)
T ss_dssp THHHHHHHHHHHH-HHHHHHHHHEEECHHHHHHHHHTCGGGGHHHHHHHHHHT-TCSCHHHHHHHHHT-TSCCCHHHHHH
T ss_pred hHHHHHHHHHHHH-HHHHHHHccCEECHHHHHHHHHcCCChHHHHHHHHHHHh-ChHHHHHHHHHHHh-hhhhccCCHHH
Confidence 6555554444444 4446799999999999999999988775 667766 99999999998775 33 3455
Q ss_pred HHHHcC-CCCH---HHHhhhcCcccccCC
Q psy10160 533 AALKLG-YLTE---EEFNKWVVPEDMLGP 557 (558)
Q Consensus 533 ~~~~~~-~l~~---~~~~~~~~p~~~~~~ 557 (558)
++.+.. .+++ ++|+ +|||.+|+|.
T Consensus 422 ~~~~~~~~~~~~~~~~l~-~ldp~~y~G~ 449 (465)
T 2qga_B 422 FIKTKCAFLPQDVVDQLL-ELTPATYTGY 449 (465)
T ss_dssp HHHHHSTTSCHHHHHHHH-HCCGGGCCTT
T ss_pred HHHhchhcCCcchHHHHH-hcCHHHhCCc
Confidence 555543 4777 7898 9999999986
|
| >3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-45 Score=372.80 Aligned_cols=304 Identities=17% Similarity=0.132 Sum_probs=236.0
Q ss_pred ceeeecccceeEEEEeccCCCCCCCccc-ccchhhh-------hhhhh-hhhhhcccccchhhhhhhHHHhhcccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGP-HIKRAVE-------AEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNL 311 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~-w~~~~l~-------~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l 311 (558)
+.++|.|.+++|+..++.. ...+..+. .+...+. ....+ ++++|.||||+|+|+|+|+||++++ |++.|
T Consensus 117 ~~~iH~g~SsnDv~~Ta~~-L~lr~~l~~~l~~~L~~l~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~-~~~~l 194 (459)
T 3bhg_A 117 VAFIHFACTSEDINNLAYA-LMIKQAIAQVIQPTIAEIMGSITLLGKQHADVAMLSRTHGQPATPTTMGKELVN-FVARL 194 (459)
T ss_dssp GGGTTTTCCHHHHHHHHHH-HHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHH
T ss_pred hhhhcCCCCHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeeccccCccceechHHHHHHH-HHHHH
Confidence 6788999999998887765 34444443 2332222 22233 8899999999999999999999998 99999
Q ss_pred cchHHHHHhHhhhhhhhcCCCCChhHH--------HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHH
Q psy10160 312 DPNDRQALNIVSIFYFTYLVKLSELLE--------TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSL 383 (558)
Q Consensus 312 ~~~~~~l~~~~~~~~~~g~~g~~~~~~--------~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l 383 (558)
.|+++||+++.....++|++||++++. +.+.+++++.|||...+.+| ++++||+++|++++|+.++++|
T Consensus 195 ~r~~~rL~~~~~~~~~~GAvGT~~a~~~~~~~~~~~~~~~~~~~~LGl~~~~~~~---~~~~rD~~~e~~~~l~~~a~~L 271 (459)
T 3bhg_A 195 KRPQQQLAEVLIPAKFNGAVGNYNAHVAAYPEVDWRKHCANFVTSLGLSFNAYTT---QIEPHDGIAEVSQIMVRINNIL 271 (459)
T ss_dssp HHHHHHHHHCCCEECCCCSSSSCHHHHHHCTTSCHHHHHHHHHHHTTCEECSSCS---SSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccccccccccCcccHHHHHHHHHHHhCCCCCcccc---chhcCHHHHHHHHHHHHHHHHH
Confidence 999999998886777788999988654 45777788889998655554 6899999999999999999999
Q ss_pred HHHhhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHH
Q psy10160 384 MKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSN 463 (558)
Q Consensus 384 ~k~a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (558)
+|||+||++|+| .|+.+...+++++|||||||||||+.+|++++.++.+.+....++..+..++++++...+..++.
T Consensus 272 ~kia~Di~ll~s---~~~~~e~~~~~~~GSSiMP~K~NP~~~e~~~g~~~l~~~~~~~~~~~l~~~~~~rdl~~s~~~r~ 348 (459)
T 3bhg_A 272 LDYTQDIWSYIS---LGYFKQKTIAEEVGSSTMPHKVNPIDFENAEGNLGLSNALFIHFANKLTQSRMQRDLSDSTVLRN 348 (459)
T ss_dssp HHHHHHHHHHHH---TTSEEECC------CCSSCCCCCTHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCTHHHHHHTT
T ss_pred HHHHHHHHHHhC---CcceehccCCCCCCCCCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhh
Confidence 999999999998 46644445567999999999999999999999999999988777665545667888776655555
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhh-----hhcccccChHHHHHHHHHHHHcCC-----CHHHH
Q psy10160 464 VLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLV-----TALNPHIGYDKAAKIAKTAHKEGT-----TLKVA 533 (558)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~-----~~la~~l~~~~a~~~~~~a~~~~~-----~~~~~ 533 (558)
++..+..+..++ ..+.+++++|+||++||+++++.+++++ +.|++. ||++||++++++.. |. +++++
T Consensus 349 l~~~~~~~~~~l-~~~~~~l~gl~vn~e~m~~~l~~~~~~~te~~~~~L~~~-G~~~A~~iv~~~~~-~~~~~~~~l~~~ 425 (459)
T 3bhg_A 349 LGVAFSYSLIAY-HSVAKGNDKLQINKSALQKDLSENWEVLAEAIQTVMRRY-NEPNAYEQLKELTR-GQMIDAENLKKF 425 (459)
T ss_dssp HHHHHHHHHHHH-HHHHHHHTTEEECHHHHHHHHHTCGGGGHHHHHHHHHHT-TCTTHHHHHHHHHT-TSCCCHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHCcCEECHHHHHHHHHcCCchHHHHHHHHHHHh-ChHHHHHHHHHHHh-hcccccccHHHH
Confidence 555554454443 4456799999999999999999999888 455555 99999999999877 43 46777
Q ss_pred HHHcCCCC---HHHHhhhcCcccccCC
Q psy10160 534 ALKLGYLT---EEEFNKWVVPEDMLGP 557 (558)
Q Consensus 534 ~~~~~~l~---~~~~~~~~~p~~~~~~ 557 (558)
+.+.. ++ .++|+ +|||..|+|.
T Consensus 426 l~~l~-~~~~~~~~l~-~~dp~~y~g~ 450 (459)
T 3bhg_A 426 IKTLS-IPEEAKAELM-KLTPETYTGL 450 (459)
T ss_dssp HHTSC-SCHHHHHHHH-HCCGGGCCTT
T ss_pred HHhcC-CCchhHHHHH-hCCHHHHhCc
Confidence 76643 33 36787 8999999986
|
| >2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-43 Score=345.75 Aligned_cols=243 Identities=17% Similarity=0.099 Sum_probs=196.7
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|.|.+++|+..++.. ...+..+..+...+.. ...+ ++++|.||||+|+|+|+|+||++++ |++.|.
T Consensus 99 ~~~vH~G~SsnDv~~Ta~~-l~lr~~l~~l~~~L~~l~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~-~~~~l~ 176 (359)
T 2fel_A 99 ADKVHFGATSQDVIDTSLM-LRLKMAAEIIATRLGHLIDTLGDLASRDGHKPLTGYTRMQAAIGITVADRAAG-WIAPLE 176 (359)
T ss_dssp GGGTTTTCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEHHHHHHH-HHHHHH
T ss_pred cchhcCCCCHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeccccCcccccchHHHHHHH-HHHHHH
Confidence 6788999999988887765 3444443333333222 2233 8899999999999999999999998 999999
Q ss_pred chHHHHHhHh---hhhhhhcCCCCChhHH---HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHH
Q psy10160 313 PNDRQALNIV---SIFYFTYLVKLSELLE---TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKI 386 (558)
Q Consensus 313 ~~~~~l~~~~---~~~~~~g~~g~~~~~~---~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~ 386 (558)
|+++||+++. ..++++|++||++.++ +.+++++++.|||+... +++++||+++|++++|+.++++|+||
T Consensus 177 r~~~rL~~~~~~~~~~~lGgavGT~~~~~~~~~~~~~~~a~~LG~~~~~-----~~~~~RD~~~e~~~~l~~~a~~L~ki 251 (359)
T 2fel_A 177 RHLLRLETFAQNGFALQFGGAAGTLEKLGDNAGAVRADLAKRLGLADRP-----QWHNQRDGIAEFANLLSLVTGTLGKF 251 (359)
T ss_dssp HHHHHHHHHHHHCSBCCCCCTTSSCTTTGGGHHHHHHHHHHHHTCBCCC-----CCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCcHHhccCccCcchHHHHHHHHHHHhCcCCCc-----hHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999877 5567788999988874 68999999999999654 36899999999999999999999999
Q ss_pred hhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHH
Q psy10160 387 ANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLR 466 (558)
Q Consensus 387 a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (558)
|+||++|+| +| ||+.+|+ ++|||||||||||+.+|+++++++++.|++.+++ ....+|+|+++..|..+|..+|
T Consensus 252 a~Dirll~s---~e-~Ei~~~~-~~GSS~MP~K~NP~~~E~i~~~a~~v~~~~~~~~-~~~~~~~er~~~~~~~e~~~lp 325 (359)
T 2fel_A 252 GQDIALMAE---IG-SEIRLSG-GGGSSAMPHKQNPVNAETLVTLARFNAVQISALH-QSLVQEQERSGAGWMLEWLTLP 325 (359)
T ss_dssp HHHHHHHHH---HC-TTEEEC-------------CCHHHHHHHHHHHHHHHHHHHHH-HTTCCCSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHhC---CC-CeecCCC-CCCCccCCcccCCHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCCcccHHHHHHHH
Confidence 999999997 89 9999996 5999999999999999999999999999999886 4556789999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCcccCHHHHHHH
Q psy10160 467 SIRLIADSATAFTDKCVSGIVANEENIHRL 496 (558)
Q Consensus 467 ~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~ 496 (558)
+++.+.++++..+..++++|+||++||..+
T Consensus 326 ~~~~~~~~~L~~~~~v~~~l~v~~~~m~~~ 355 (359)
T 2fel_A 326 QMVTATGTSLLVAERLAAQIDRLGADESHH 355 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHEEEECC-----
T ss_pred HHHHHHHHHHHHHHHHHccCEECHHHhCcc
Confidence 999999999999999999999999999865
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=241.09 Aligned_cols=276 Identities=19% Similarity=0.182 Sum_probs=199.2
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCC-C-CccccC-ceeEEeccCCCCCCcEEEEeCCcc
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVAD-P-NAIDYG-TILSSAFPSESASPVVTQTTTTTT 88 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~-~-~~v~~~-~~~~~~~~~~~p~p~v~W~~~~~~ 88 (558)
.++|.|.+++.+|+|.|+|.|.|..|... ++.|.|..+|.+.... + ..+.+| ...+.|...+.|.|.+.|++++..
T Consensus 252 ~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~ 331 (570)
T 3b43_A 252 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETE 331 (570)
T ss_dssp EEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEE
T ss_pred EEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEE
Confidence 36899999999999999999999999764 6667666666543322 2 224444 566899999999999999999988
Q ss_pred cCCCCceeecc---ccce---------eeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeecc
Q psy10160 89 EATSPHVYAAL---THCV---------PWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGY 156 (558)
Q Consensus 89 ~~~~~~~~~g~---~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~ 156 (558)
+..+.+..... ...+ .-.|.|.+.|..+.......+.+..||.+...+....+.+|+.+.|.|.+.|.
T Consensus 332 l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~ 411 (570)
T 3b43_A 332 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGT 411 (570)
T ss_dssp CCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESS
T ss_pred CCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecC
Confidence 77665432111 1111 23567888888887777777788889999888888889999999999999999
Q ss_pred CCCeEEEEECCEEeccCCceEEEccC---CeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccCCCCCCCCCCccc
Q psy10160 157 PIPQVFWYKDGQVIENDGVHYRITES---NRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFA 233 (558)
Q Consensus 157 P~p~i~W~~~g~~l~~~~~~~~~~~~---~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~ 233 (558)
|.|.+.|+|++..+..+. ++.+..+ ++|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+ |.+...+.
T Consensus 412 P~p~v~W~k~g~~l~~~~-~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~---P~~~~~~~-- 485 (570)
T 3b43_A 412 PPFQVSWHKDKRELRSGK-KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAP---PRFVKKLS-- 485 (570)
T ss_dssp SSCCCEEEETTEECCSSS-SEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCC---CEEEECCC--
T ss_pred CCCEEEEEECCEECcCCC-CEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccC---CcccccCC--
Confidence 999999999999987654 5544333 37999999999999999999999999999999999644 33322111
Q ss_pred cceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhhhh--h---hcccccchhhhhhhHHHhhc
Q psy10160 234 NCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAADK--K---RRSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 234 ~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~~~--~---~~grth~q~a~~~t~g~~~~ 304 (558)
+ ..+.. +......|.+.|.|++.+.|++++.......... . ..+..++..+.+...|.|..
T Consensus 486 ~-------~~~~~---g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 551 (570)
T 3b43_A 486 D-------ISTVV---GEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTC 551 (570)
T ss_dssp C-------BCCBT---TCCEEEEEEEESCSSCCCEEEETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEEEE
T ss_pred C-------ceecC---CCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEEEE
Confidence 1 11122 2333345566699999999999974433222111 1 12345566677777777665
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=230.41 Aligned_cols=276 Identities=19% Similarity=0.234 Sum_probs=193.7
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeC--CCCccCCCCc--ccc-CceeEEeccCCCCCCcEEEEeCC
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQAL--PSEKVADPNA--IDY-GTILSSAFPSESASPVVTQTTTT 86 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~--p~~~~~~~~~--v~~-~~~~~~~~~~~~p~p~v~W~~~~ 86 (558)
.++|.|.+++.+|+|.|+|.|.|..|... +..+.|... |+.....+.. +.. ..+.+.|...+.|+|.++|++++
T Consensus 156 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g 235 (570)
T 3b43_A 156 VATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDN 235 (570)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETT
T ss_pred EEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECC
Confidence 46899999999999999999999998764 566766543 3333333332 334 46678999999999999999999
Q ss_pred cccCCCCceeec---cccce---------eeceeEEeeccceeeEEeeeceeeeCcEEEecCC-ceEeeCCCcEEEEeEe
Q psy10160 87 TTEATSPHVYAA---LTHCV---------PWSNVCLFGARSGYLKETQNGGYLVPVKVNITLE-TQVFGVGSDISIPCDV 153 (558)
Q Consensus 87 ~~~~~~~~~~~g---~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~v~~G~~v~L~C~~ 153 (558)
..+..+.+.... ....+ .-.|.|.+.|..+.......+.+..||.+..... ...+.+|+.+.|.|.+
T Consensus 236 ~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~ 315 (570)
T 3b43_A 236 REIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI 315 (570)
T ss_dssp EECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEE
T ss_pred EECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEE
Confidence 887665443211 11111 2246788888877777777777777887765543 4457899999999999
Q ss_pred eccCCCeEEEEECCEEeccCCceEEEc---cCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccCCCCCCCCCC
Q psy10160 154 DGYPIPQVFWYKDGQVIENDGVHYRIT---ESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLP 230 (558)
Q Consensus 154 ~g~P~p~i~W~~~g~~l~~~~~~~~~~---~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~ 230 (558)
.|.|.|.+.|+|++..+..+. ++.+. ..+.|.|.+++.+|+|.|+|.|.|..|....++.|.|..+| .+...+
T Consensus 316 ~g~P~p~v~W~k~~~~l~~~~-~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P---~~~~~~ 391 (570)
T 3b43_A 316 GGSPEIKVLWYKDETEIQESS-KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPP---VFRKKP 391 (570)
T ss_dssp ESSSSCEEEEEETTEECCCSS-SEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCC---EECSCC
T ss_pred eeCCCCEEEEeECCEECCCCC-cEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCC---eeecCC
Confidence 999999999999999987654 33322 23579999999999999999999999999999999997543 333222
Q ss_pred ccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhh-hhhhhc---ccccchhhhhhhHHHhhc
Q psy10160 231 LFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAA-ADKKRR---SRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 231 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~-~~~~~~---grth~q~a~~~t~g~~~~ 304 (558)
. . ... .. +......|.+.|.|+|.+.|++++....... ..+... +..++..+.....|.|..
T Consensus 392 ~--~-~~~------~~---G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 457 (570)
T 3b43_A 392 H--P-VET------LK---GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQC 457 (570)
T ss_dssp C--C-EEE------CT---TCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred C--c-eee------cC---CCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEE
Confidence 1 1 111 12 2333355666699999999999986654332 111111 234566677777776655
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-24 Score=219.58 Aligned_cols=283 Identities=17% Similarity=0.170 Sum_probs=183.1
Q ss_pred CceE-ecCCeEEEcCC-----CCCCCEEEEEEEEeCC-cceEE--EEEEEEeCCCCccCCC-CccccC-ceeEEeccCCC
Q psy10160 7 ENYE-LNKNMLTIKRV-----EPERLGAYTCQAYNGL-GRAVS--WTVTLQALPSEKVADP-NAIDYG-TILSSAFPSES 75 (558)
Q Consensus 7 ~r~~-~~~~~L~I~~v-----~~~D~G~Y~C~a~n~~-g~~~s--~~l~V~~~p~~~~~~~-~~v~~~-~~~~~~~~~~~ 75 (558)
.++. ..+++|.|.++ +.+|+|.|+|.+.|.. +...+ ..+.|..++.....+. ..+..| .+.+.|...+.
T Consensus 69 ~~~~~~~~~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~ 148 (403)
T 3laf_A 69 DRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGD 148 (403)
T ss_dssp TTEEECTTSCEEECSCCCBTTBCSSCEEEEEEEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEECS
T ss_pred ccEEEecCCcEEEeeeeccCCCCCcceEEEEEEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEccc
Confidence 3443 46789999988 6789999999999754 33333 3444433333222222 223444 56688888889
Q ss_pred CCCcEEEEeCCcccCCC---Cce----------------eeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecC
Q psy10160 76 ASPVVTQTTTTTTEATS---PHV----------------YAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITL 136 (558)
Q Consensus 76 p~p~v~W~~~~~~~~~~---~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 136 (558)
|.|.+.|++++..+... .+. ..|.|.|.+.+...........+..........++.+...+
T Consensus 149 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~ 228 (403)
T 3laf_A 149 PMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRP 228 (403)
T ss_dssp SCCEEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECC
T ss_pred CCCeEEEEECCEeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCC
Confidence 99999999998766321 111 14455555443322111111122222211112233455667
Q ss_pred CceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 216 (558)
....+.+|+.+.|.|.+.|.|.|.+.|++++..+.....++....+++|.|.+++.+|+|.|+|.|.|..|..+..+.|.
T Consensus 229 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 308 (403)
T 3laf_A 229 SNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELT 308 (403)
T ss_dssp CCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred CceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEE
Confidence 77888999999999999999999999999999987766677777788999999999999999999999999999999999
Q ss_pred EeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhh-hhhhhcccccchhhh
Q psy10160 217 VEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAA-ADKKRRSRRSLSVVN 295 (558)
Q Consensus 217 V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~-~~~~~~grth~q~a~ 295 (558)
|..++ .+...+ .. ..+.. +......|.+.|.|+|.+.|++++....... ......+..++..+.
T Consensus 309 V~~~p---~~~~~~--~~-------~~~~~---g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~ 373 (403)
T 3laf_A 309 VLVPP---WFLNHP--SN-------LYAYE---SMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVV 373 (403)
T ss_dssp EEEEE---EEEECC--CC-------EECCT---TCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCC
T ss_pred EECCC---cEeecC--cc-------eEEec---CCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccc
Confidence 97543 211111 00 01112 3334466777789999999999986654333 222223445555566
Q ss_pred hhhHHHhhc
Q psy10160 296 KWSLRQAFT 304 (558)
Q Consensus 296 ~~t~g~~~~ 304 (558)
....|.|..
T Consensus 374 ~~d~G~Y~C 382 (403)
T 3laf_A 374 KSDEGFYQC 382 (403)
T ss_dssp GGGCEEEEE
T ss_pred cccCEEEEE
Confidence 666665554
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-23 Score=202.07 Aligned_cols=205 Identities=21% Similarity=0.236 Sum_probs=159.8
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCCC--ccccC-ceeEEeccCCCCCCcEEEEeCCcc
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPN--AIDYG-TILSSAFPSESASPVVTQTTTTTT 88 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~~--~v~~~-~~~~~~~~~~~p~p~v~W~~~~~~ 88 (558)
+++|.|.+++.+|+|.|+|.+.|..|... +..+.|..+|......+. .+..| .+.+.|...+.|.|.+.|++++..
T Consensus 60 ~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~ 139 (284)
T 2rik_A 60 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETE 139 (284)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEE
T ss_pred EEEEEEecCCcccCEEEEEEEEECCceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEE
Confidence 46899999999999999999999988764 667777776655443332 24444 566899999999999999999887
Q ss_pred cCCCCceeecc---cc---------ceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeecc
Q psy10160 89 EATSPHVYAAL---TH---------CVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGY 156 (558)
Q Consensus 89 ~~~~~~~~~g~---~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~ 156 (558)
+.......... .. ...-.|.|.+.+..+.......+.+..||.+...+....+.+|+.+.|.|.+.|.
T Consensus 140 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~ 219 (284)
T 2rik_A 140 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGT 219 (284)
T ss_dssp CCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSS
T ss_pred CcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEec
Confidence 76654432110 00 1122456777777766666666777788888888888889999999999999999
Q ss_pred CCCeEEEEECCEEeccCCceEEEccC---CeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEe
Q psy10160 157 PIPQVFWYKDGQVIENDGVHYRITES---NRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218 (558)
Q Consensus 157 P~p~i~W~~~g~~l~~~~~~~~~~~~---~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 218 (558)
|.|.+.|++++..+.... ++.+..+ .+|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 220 p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 220 PPFQVSWHKDKRELRSGK-KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp SCCEEEEEETTEEECBTT-TEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCEEEEEECCEECcCCC-CEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence 999999999999987654 4443333 379999999999999999999999999999999885
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7e-24 Score=215.99 Aligned_cols=282 Identities=16% Similarity=0.145 Sum_probs=174.8
Q ss_pred CCceEecCCeEEEcCC-CCCCCEEEEEEEEeCCcceE--EEEEEEEeCCCCccCCC--CccccC-ceeEEeccC-CCCCC
Q psy10160 6 SENYELNKNMLTIKRV-EPERLGAYTCQAYNGLGRAV--SWTVTLQALPSEKVADP--NAIDYG-TILSSAFPS-ESASP 78 (558)
Q Consensus 6 ~~r~~~~~~~L~I~~v-~~~D~G~Y~C~a~n~~g~~~--s~~l~V~~~p~~~~~~~--~~v~~~-~~~~~~~~~-~~p~p 78 (558)
+.++...+++|.|.++ +.+|+|.|+|.|.|..|... ...+.+...+......+ ..+..| ...+.|... +.|.+
T Consensus 54 ~~~~~~~~g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~ 133 (384)
T 3kld_A 54 DFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGEL 133 (384)
T ss_dssp --CEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCE
T ss_pred CccEEEECCEEEEcCCCCcccCEEEEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCe
Confidence 3466777888988887 78999999999999999764 45566655554433332 234444 455667543 45778
Q ss_pred cEEEEeCCcccCCCCce-----------------eeccccceeeceeEEee--ccceeeEEeee-ceeeeCcEE-EecCC
Q psy10160 79 VVTQTTTTTTEATSPHV-----------------YAALTHCVPWSNVCLFG--ARSGYLKETQN-GGYLVPVKV-NITLE 137 (558)
Q Consensus 79 ~v~W~~~~~~~~~~~~~-----------------~~g~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~p~~~-~~~~~ 137 (558)
.+.|++++.......+. ..|.|.|.+.+...... .....+..... .....+|.+ ...+.
T Consensus 134 ~~~W~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~ 213 (384)
T 3kld_A 134 SYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPE 213 (384)
T ss_dssp EEEEEETTEECCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCS
T ss_pred EEEEEECCCCCEeeccEEEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCC
Confidence 99999987655433222 14455555443211100 00001111100 011123333 33455
Q ss_pred ceEeeCCCcEEEEeEeeccCCCeEEEEECC-EEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIPQVFWYKDG-QVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g-~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 216 (558)
...+.+|+.+.|.|.+.|+|.|.+.|+|++ ..+... ......+++|.|.+++.+|+|.|+|.|.|..|.......|.
T Consensus 214 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 291 (384)
T 3kld_A 214 TVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARK--ARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLT 291 (384)
T ss_dssp EEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTT--CEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred ceEecCCCcEEEEEEEeecCCCcEEEEeCCCcccccc--ceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEE
Confidence 677899999999999999999999999954 444432 22234567899999999999999999999999999889999
Q ss_pred EeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhhhhhhcccccchhhhh
Q psy10160 217 VEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAADKKRRSRRSLSVVNK 296 (558)
Q Consensus 217 V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~~~~~~grth~q~a~~ 296 (558)
|..+| .+...+ .+ ..+..|. .....|.+.|.|+|.+.|++++..+.....-....+...+..+..
T Consensus 292 v~~~P---~~~~~~--~~-------~~v~~g~---~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~ 356 (384)
T 3kld_A 292 FYAQP---NWVQII--ND-------IHVAMEE---SVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNL 356 (384)
T ss_dssp EEEEE---EEEECC--CC-------EEECTTC---CEEEECEEEEESCCEEEEEETTEECCCBTTEEEETTEEEESSCCG
T ss_pred EecCC---ccccCC--Cc-------eEecCCC---CEEEEeECCccCCCeEEEEECCEECCCCccEEEeCCEEEEeecCh
Confidence 86543 222111 11 1122222 333556667999999999999866543322222334556666666
Q ss_pred hhHHHhhc
Q psy10160 297 WSLRQAFT 304 (558)
Q Consensus 297 ~t~g~~~~ 304 (558)
...|.|..
T Consensus 357 ~D~G~Y~C 364 (384)
T 3kld_A 357 SDAGMYQC 364 (384)
T ss_dssp GGCEEEEE
T ss_pred hhCEEEEE
Confidence 66666554
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-24 Score=222.16 Aligned_cols=244 Identities=11% Similarity=0.023 Sum_probs=148.7
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCCCcc-ccCceeEEeccCCCCCCcEEEEeCCcccCCC
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPNAI-DYGTILSSAFPSESASPVVTQTTTTTTEATS 92 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~~~v-~~~~~~~~~~~~~~p~p~v~W~~~~~~~~~~ 92 (558)
+|.|.+++.+|+|.|+|.|.|..|... .+.|.|...|......|..+ .++...+.|.+.|.|.|.|+|++++......
T Consensus 104 sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~ 183 (423)
T 3qs7_E 104 SMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESC 183 (423)
T ss_dssp EEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-----CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------
T ss_pred EEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEecCccccccCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCccc
Confidence 699999999999999999999988763 44555543333221223222 3445678999999999999999987644221
Q ss_pred Cc-----eee---ccccceeeceeEEeeccceeeEEe-eeceeeeCcEEEecCCceEeeCCCcEEEEeEeec-cCCCeEE
Q psy10160 93 PH-----VYA---ALTHCVPWSNVCLFGARSGYLKET-QNGGYLVPVKVNITLETQVFGVGSDISIPCDVDG-YPIPQVF 162 (558)
Q Consensus 93 ~~-----~~~---g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g-~P~p~i~ 162 (558)
.. ... .......-.|.|.+.|..+..... ..+.+..+|.+ .+....+.+|+.+.|.|.+.| .|.|.|.
T Consensus 184 ~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~ 261 (423)
T 3qs7_E 184 KEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLT 261 (423)
T ss_dssp ------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCS--STTEEEEETTSCEEEEEEEEESSSCCCEE
T ss_pred cccccccccccceEEecccCeEEEEEEEcCCCCcceeeEEEEEecCCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEE
Confidence 00 000 000001113455666655543321 22223233332 445677899999999999999 7789999
Q ss_pred EEECCEEeccCCceE---E------EccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccCCCCCCCCCCccc
Q psy10160 163 WYKDGQVIENDGVHY---R------ITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFA 233 (558)
Q Consensus 163 W~~~g~~l~~~~~~~---~------~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~ 233 (558)
|+|++..+.... .+ . ...+++|.|.+++.+|+|.|+|.|.|. .+..+.|.|..++ .+...+...
T Consensus 262 W~k~g~~l~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p---~i~~~~~~~ 334 (423)
T 3qs7_E 262 WELENKALEEGN-YFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKG---FINATNSSE 334 (423)
T ss_dssp EEESSSBCCGGG-EEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSC---EEEEC---C
T ss_pred EEECCEEccccc-eeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCC---cceEcCCCc
Confidence 999998775431 11 0 122347999999999999999999998 6778888886543 111111100
Q ss_pred cceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhh
Q psy10160 234 NCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAE 277 (558)
Q Consensus 234 ~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~ 277 (558)
. ..+..|.... ..|.+.|.|+|.+.|++++..+.
T Consensus 335 --~-----~~v~~G~~v~---l~C~~~g~P~p~i~W~k~g~~l~ 368 (423)
T 3qs7_E 335 --D-----YEIDQYEEFC---FSVRFKAYPQIRCTWTFSRKSFP 368 (423)
T ss_dssp --E-----ECCCTTCCCC---EEEEEEEESCCEEEEEETTEEEE
T ss_pred --c-----EEecCCCeEE---EEEEEEEcCCCeEEEEECCEECC
Confidence 1 1122333344 44556689999999999986653
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-23 Score=209.08 Aligned_cols=205 Identities=20% Similarity=0.280 Sum_probs=152.1
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE----EEEEEEE-------eCCCCccCCCCc--cccC-ceeEEeccCCCCC
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV----SWTVTLQ-------ALPSEKVADPNA--IDYG-TILSSAFPSESAS 77 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~----s~~l~V~-------~~p~~~~~~~~~--v~~~-~~~~~~~~~~~p~ 77 (558)
.+++|.|.+++.+|+|.|+|.|.|..+... ...+.+. ..|......+.. +..| .+.+.|.+.+.|.
T Consensus 155 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~ 234 (384)
T 3kld_A 155 ETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPV 234 (384)
T ss_dssp TTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESC
T ss_pred CCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCC
Confidence 567899999999999999999999887642 1222222 112222222322 3344 6678999999999
Q ss_pred CcEEEEeCCc-ccCCCCceee--------ccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEE
Q psy10160 78 PVVTQTTTTT-TEATSPHVYA--------ALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDIS 148 (558)
Q Consensus 78 p~v~W~~~~~-~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~ 148 (558)
|.+.|++++. .+....+... .......-.|.|.+.|..+.......+.+..+|.+...+....+.+|+.+.
T Consensus 235 p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~ 314 (384)
T 3kld_A 235 PTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVF 314 (384)
T ss_dssp CEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEE
T ss_pred CcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceEecCCCCEE
Confidence 9999999654 3332211110 001111224577777777777666677777888888888888999999999
Q ss_pred EEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEe
Q psy10160 149 IPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218 (558)
Q Consensus 149 L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 218 (558)
|.|.+.|.|.|.|.|+|+|..+..+. ++.+ .+++|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 315 l~C~~~g~P~p~i~W~k~g~~l~~~~-~~~~-~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~ 382 (384)
T 3kld_A 315 WECKANGRPKPTYRWLKNGDPLLTRD-RIQI-EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382 (384)
T ss_dssp EECEEEEESCCEEEEEETTEECCCBT-TEEE-ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EEeECCccCCCeEEEEECCEECCCCc-cEEE-eCCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence 99999999999999999999987644 5554 46799999999999999999999999999999999985
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-23 Score=211.57 Aligned_cols=280 Identities=15% Similarity=0.131 Sum_probs=180.7
Q ss_pred CCceEecCCeEEEcCCCC-CCCEEEEEEEEeCCcceE--EEEEEEEeCCCCccCCC--CccccC-ceeEEecc-CCCCCC
Q psy10160 6 SENYELNKNMLTIKRVEP-ERLGAYTCQAYNGLGRAV--SWTVTLQALPSEKVADP--NAIDYG-TILSSAFP-SESASP 78 (558)
Q Consensus 6 ~~r~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~g~~~--s~~l~V~~~p~~~~~~~--~~v~~~-~~~~~~~~-~~~p~p 78 (558)
..++.+.+++|.|.++.. +|+|.|+|.+.|..|... ...+.|...+......+ ..+..| .+.+.|.. .+.|.+
T Consensus 53 ~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~ 132 (382)
T 1cs6_A 53 DSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPAL 132 (382)
T ss_dssp TSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCC
T ss_pred CccEEeeCCeEEEecccccccCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCc
Confidence 457788889999999997 999999999999988764 46667766655443332 234444 55677874 456889
Q ss_pred cEEEEeCCcccC--CCCce-----------------eeccccceeecee----EEeeccceeeEEeeeceeeeCcEEEe-
Q psy10160 79 VVTQTTTTTTEA--TSPHV-----------------YAALTHCVPWSNV----CLFGARSGYLKETQNGGYLVPVKVNI- 134 (558)
Q Consensus 79 ~v~W~~~~~~~~--~~~~~-----------------~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~~~- 134 (558)
.+.|++++.... ...+. ..|.|.|.+.+.. .........+..........+|.+..
T Consensus 133 ~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~ 212 (382)
T 1cs6_A 133 SYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK 212 (382)
T ss_dssp EEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEEC
T ss_pred EEEEEECCCccccccCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceecc
Confidence 999999986542 11111 1455666555443 11111111111111111223454444
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEE
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVT 214 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 214 (558)
.+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.... ...+++|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus 213 ~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 288 (382)
T 1cs6_A 213 FPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW----LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGR 288 (382)
T ss_dssp CCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC----SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred CCCceEEeCCCeEEEEEEEccCCCCEEEEEECCcccccEE----ecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEE
Confidence 4567778999999999999999999999999887764311 134568999999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhhhhhhcccccchhh
Q psy10160 215 IRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAADKKRRSRRSLSVV 294 (558)
Q Consensus 215 l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~~~~~~grth~q~a 294 (558)
|.|..++ .+...+ .. . .+.. +......|.+.|.|+|.+.|++++.......+-....+..++..+
T Consensus 289 l~V~~~p---~~~~~~--~~-~------~~~~---g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~L~i~~v 353 (382)
T 1cs6_A 289 IIIHAQP---DWLDVI--TD-T------EADI---GSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKL 353 (382)
T ss_dssp EEEEEEE---EEEECC--CC-E------EEET---TCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSC
T ss_pred EEEecCC---CcccCC--Cc-c------EEcC---CCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEECCEEEECcC
Confidence 9997543 221111 11 1 1122 333445666678999999999997654433221122344555555
Q ss_pred hhhhHHHhhc
Q psy10160 295 NKWSLRQAFT 304 (558)
Q Consensus 295 ~~~t~g~~~~ 304 (558)
.....|.|..
T Consensus 354 ~~~d~G~Y~C 363 (382)
T 1cs6_A 354 VLEDSGMYQC 363 (382)
T ss_dssp CGGGCEEEEE
T ss_pred CcccCEEEEE
Confidence 5555555443
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-22 Score=194.06 Aligned_cols=206 Identities=20% Similarity=0.284 Sum_probs=143.1
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEe--CCCCccCC-CCccccC-ceeEEeccCCCCCCcEEEEeCCcc
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQA--LPSEKVAD-PNAIDYG-TILSSAFPSESASPVVTQTTTTTT 88 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~--~p~~~~~~-~~~v~~~-~~~~~~~~~~~p~p~v~W~~~~~~ 88 (558)
+++|.|.+++.+|+|.|+|.+.|..|...+..+.|.+ .|.....+ +..+..| .+.+.|...+.|.|.+.|++++..
T Consensus 61 ~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~ 140 (291)
T 1qz1_A 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRD 140 (291)
T ss_dssp EEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSC
T ss_pred eEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEE
Confidence 4689999999999999999999998765544444444 33322222 2234444 566889998999999999999876
Q ss_pred cCCCC--ceeeccccce---------eeceeEEeeccce-e-eEEeeeceeeeCcEEEecCC--ceEeeCCCcEEEEeEe
Q psy10160 89 EATSP--HVYAALTHCV---------PWSNVCLFGARSG-Y-LKETQNGGYLVPVKVNITLE--TQVFGVGSDISIPCDV 153 (558)
Q Consensus 89 ~~~~~--~~~~g~~~~~---------~~~~~~~~~~~~~-~-~~~~~~~~~~~p~~~~~~~~--~~~v~~G~~v~L~C~~ 153 (558)
+.... +........+ .-.|.|.+.+... . ........+..+|.+...+. ...+.+|+.+.|.|.+
T Consensus 141 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~ 220 (291)
T 1qz1_A 141 VILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDA 220 (291)
T ss_dssp SSTTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEE
T ss_pred cccCCCceEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEE
Confidence 64322 1110000011 1134455554321 1 11222334445666665443 4567899999999999
Q ss_pred eccCCCeEEEEECCEEeccCC---ceEEEccC-CeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEe
Q psy10160 154 DGYPIPQVFWYKDGQVIENDG---VHYRITES-NRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218 (558)
Q Consensus 154 ~g~P~p~i~W~~~g~~l~~~~---~~~~~~~~-~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 218 (558)
.|.|.|.+.|+++|..+.... .++....+ .+|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 221 ~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 289 (291)
T 1qz1_A 221 DGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289 (291)
T ss_dssp EEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEE
Confidence 999999999999999987653 25555443 479999999999999999999999999999999985
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-22 Score=205.46 Aligned_cols=209 Identities=21% Similarity=0.288 Sum_probs=161.9
Q ss_pred ecCCeEEEcCCCCCCCEEEEEEEEeCCcceE--EEEEEEEeCCCCc-----cCCCC--cccc-CceeEEeccCCCCCCcE
Q psy10160 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAV--SWTVTLQALPSEK-----VADPN--AIDY-GTILSSAFPSESASPVV 80 (558)
Q Consensus 11 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~--s~~l~V~~~p~~~-----~~~~~--~v~~-~~~~~~~~~~~~p~p~v 80 (558)
..+++|.|.+++.+|+|.|+|.+.|..|... ...+.|...|... ...+. .+.. ..+.+.|...+.|.|.+
T Consensus 174 ~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~ 253 (403)
T 3laf_A 174 LPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSF 253 (403)
T ss_dssp CTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEE
T ss_pred cCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeE
Confidence 4577999999999999999999999877643 4566666555321 11222 2333 46668899999999999
Q ss_pred EEEeCCcccCCCCceee-ccccce---------eeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEE
Q psy10160 81 TQTTTTTTEATSPHVYA-ALTHCV---------PWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIP 150 (558)
Q Consensus 81 ~W~~~~~~~~~~~~~~~-g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~ 150 (558)
.|++++..+........ .....+ .-.|.|.+.+..+.......+.+..||.+...+....+.+|+.+.|.
T Consensus 254 ~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~ 333 (403)
T 3laf_A 254 TWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFE 333 (403)
T ss_dssp EEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEEC
T ss_pred EEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceEEecCCeEEEE
Confidence 99999877654432211 000111 12456777777777777777777788988888888889999999999
Q ss_pred eEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEecc
Q psy10160 151 CDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGI 220 (558)
Q Consensus 151 C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 220 (558)
|.+.|.|.|.+.|+++|..+.... ++.+..+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|.+|
T Consensus 334 C~~~g~p~p~v~W~~~g~~~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P 402 (403)
T 3laf_A 334 CAVSGKPVPTVNWMKNGDVVIPSD-YFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402 (403)
T ss_dssp CEEEEESCCEEEEEETTEECCCSS-SEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred EEEeeccCCEEEEEECCEECCCCC-cEEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCC
Confidence 999999999999999999987654 566667789999999999999999999999999999999999755
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.2e-24 Score=224.16 Aligned_cols=271 Identities=10% Similarity=-0.017 Sum_probs=162.8
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEeCCCCccCC--CCc-cccCceeEEeccCCCCCCcEEEEeCCcccCC
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVAD--PNA-IDYGTILSSAFPSESASPVVTQTTTTTTEAT 91 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~~p~~~~~~--~~~-v~~~~~~~~~~~~~~p~p~v~W~~~~~~~~~ 91 (558)
+|.|.+|+.+|+|.|+|.+.|..|.. +..+.|.+.|...... |.. ..++...+.|.+.|.|.|.++|++++.....
T Consensus 104 SL~I~~v~~~D~G~Y~C~~~n~~~~~-~~~~~v~v~~~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~ 182 (527)
T 3qs9_E 104 SMVILKMTETQAGEYLLFIQSEATNY-TILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGES 182 (527)
T ss_dssp EEEESSCCSSSCSEEEEEEEC--CEE-EEEEEEEEC-----CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC------
T ss_pred EEEECcCChhhCeeEEEEEEeccccE-EEEEEEEECCceeeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCcc
Confidence 59999999999999999999988764 3445555554332211 111 2244566899999999999999998765432
Q ss_pred CCceee--------ccccceeeceeEEeeccceeeEEe-eeceeeeCcEEEecCCceEeeCCCcEEEEeEee-ccCCCeE
Q psy10160 92 SPHVYA--------ALTHCVPWSNVCLFGARSGYLKET-QNGGYLVPVKVNITLETQVFGVGSDISIPCDVD-GYPIPQV 161 (558)
Q Consensus 92 ~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~-g~P~p~i 161 (558)
...... .......-.|.|.+.|..+..... ..+.+..+|.+ .+....+.+|+.+.|.|.+. |.|.|.|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i 260 (527)
T 3qs9_E 183 CKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGL 260 (527)
T ss_dssp -------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCE
T ss_pred ccccCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEEEEEEeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEE
Confidence 110000 000001123455566555443332 22333334433 55677889999999999996 9999999
Q ss_pred EEEECCEEeccCCceEE---------EccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccCCCCCCCCCCcc
Q psy10160 162 FWYKDGQVIENDGVHYR---------ITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLF 232 (558)
Q Consensus 162 ~W~~~g~~l~~~~~~~~---------~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~ 232 (558)
.|+|++..+.... .+. ....++|.|.+++.+|+|.|+|.|.|. .+..+.|.|..++ .+...+..
T Consensus 261 ~W~k~g~~l~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p---~i~~~~~~ 333 (527)
T 3qs9_E 261 TWELENKALEEGN-YFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKG---FINATNSS 333 (527)
T ss_dssp EEECSSSCCCGGG-EEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--C---EEECCCSC
T ss_pred EEEECCEECCCCc-eeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccC---ccccccCc
Confidence 9999998775432 111 112346999999999999999999998 6677888886443 21111111
Q ss_pred ccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhhhhhhcccccchhhhhhhHHHhhcc
Q psy10160 233 ANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAADKKRRSRRSLSVVNKWSLRQAFTT 305 (558)
Q Consensus 233 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~~~~~~grth~q~a~~~t~g~~~~~ 305 (558)
. .+ .+..|.... ..|.+.|.|+|.+.|++++..+..........+...+..+.....|.|...
T Consensus 334 ~--~~-----~v~~G~~v~---L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~ 396 (527)
T 3qs9_E 334 E--DY-----EIDQYEEFC---FSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFH 396 (527)
T ss_dssp C--EE-----CCCTTCCCC---EEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEE
T ss_pred c--cE-----EEcCCCeEE---EEEEEEecCCCEEEEEECCEECcCCcccccCCcEEEEecCCcccCEEEEEE
Confidence 1 11 112233334 445566899999999999766543332222334455666777777777653
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.3e-22 Score=191.87 Aligned_cols=207 Identities=20% Similarity=0.290 Sum_probs=140.1
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEE--EEeCCCCccCC-CCccccC-ceeEEeccCCCCCCcEEEEeCCccc
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVT--LQALPSEKVAD-PNAIDYG-TILSSAFPSESASPVVTQTTTTTTE 89 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~--V~~~p~~~~~~-~~~v~~~-~~~~~~~~~~~p~p~v~W~~~~~~~ 89 (558)
.+|.|.+++.+|+|.|+|.+.|..|...+..+. |...|.....+ +..+..| .+.+.|...+.|.|.+.|++++..+
T Consensus 60 ~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~ 139 (291)
T 2wim_A 60 SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEV 139 (291)
T ss_dssp EEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----
T ss_pred EEEEEccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccc
Confidence 489999999999999999999998877544444 44444333222 2234444 5668899999999999999998665
Q ss_pred CC--CCceeeccccce---------eeceeEEeeccce-ee-EEeeeceeeeCcEEEecCC--ceEeeCCCcEEEEeEee
Q psy10160 90 AT--SPHVYAALTHCV---------PWSNVCLFGARSG-YL-KETQNGGYLVPVKVNITLE--TQVFGVGSDISIPCDVD 154 (558)
Q Consensus 90 ~~--~~~~~~g~~~~~---------~~~~~~~~~~~~~-~~-~~~~~~~~~~p~~~~~~~~--~~~v~~G~~v~L~C~~~ 154 (558)
.. ..+........+ .-.|.|.+.+..+ .. .......+..||.+...+. ...+.+|+.+.|.|.+.
T Consensus 140 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~ 219 (291)
T 2wim_A 140 TTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS 219 (291)
T ss_dssp CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCC
T ss_pred cccCCceEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEee
Confidence 43 111111000111 1134555554432 11 1222334445666655444 34567899999999999
Q ss_pred ccCCCeEEEEECCEEeccCCceEEEc-cCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccC
Q psy10160 155 GYPIPQVFWYKDGQVIENDGVHYRIT-ESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIF 221 (558)
Q Consensus 155 g~P~p~i~W~~~g~~l~~~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 221 (558)
|.|.|.+.|+++|..+..+. ++.+. .+++|.|.+++.+|+|.|+|.|.|..|....++.|.|..++
T Consensus 220 g~p~p~v~W~~~g~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~ 286 (291)
T 2wim_A 220 GSPEPAISWFRNGKLIEENE-KYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQH 286 (291)
T ss_dssp CBSCCEEEEEETTEECCCTT-TEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC----
T ss_pred cCCCCeEEEEECCEECcCCc-cEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEec
Confidence 99999999999999987655 44443 35689999999999999999999999999999999996554
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.6e-23 Score=209.01 Aligned_cols=277 Identities=20% Similarity=0.206 Sum_probs=172.2
Q ss_pred cCCeEEEc----CCCCCCCEEEEEEEEeCCcceEEE--EEEEEeCCCCccCC--CCccccC-ceeEEecc-CCCCCCcEE
Q psy10160 12 NKNMLTIK----RVEPERLGAYTCQAYNGLGRAVSW--TVTLQALPSEKVAD--PNAIDYG-TILSSAFP-SESASPVVT 81 (558)
Q Consensus 12 ~~~~L~I~----~v~~~D~G~Y~C~a~n~~g~~~s~--~l~V~~~p~~~~~~--~~~v~~~-~~~~~~~~-~~~p~p~v~ 81 (558)
.+++|.|. +++.+|+|.|+|.+.|..|...+. .+.|...|...... +..+.+| .+.+.|.. .+.|.|.+.
T Consensus 71 ~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~ 150 (404)
T 3p3y_A 71 RSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIF 150 (404)
T ss_dssp SSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEE
T ss_pred CCceEEEEeccCCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEE
Confidence 56778775 899999999999999999887544 44444444433322 2334445 55678877 788999999
Q ss_pred EEeCCcccCC-CCcee-----------------eccccceeeceeEEeecc--ceeeEEeee-ceeeeCcEEEecC---C
Q psy10160 82 QTTTTTTEAT-SPHVY-----------------AALTHCVPWSNVCLFGAR--SGYLKETQN-GGYLVPVKVNITL---E 137 (558)
Q Consensus 82 W~~~~~~~~~-~~~~~-----------------~g~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~p~~~~~~~---~ 137 (558)
|++++..... ..+.. .|.|.|.+.+........ ...+..... .....+|.+.... .
T Consensus 151 W~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~ 230 (404)
T 3p3y_A 151 WMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTAS 230 (404)
T ss_dssp EECTTSCBCCCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEE
T ss_pred EeCCCccccCCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCC
Confidence 9998744322 22221 244555444321111000 011111110 0111233333222 3
Q ss_pred ceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
...+.+|+.+.|.|.+.|+|.|.+.|++++..+.....+ ....+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 231 ~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 309 (404)
T 3p3y_A 231 SQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAK-FENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRV 309 (404)
T ss_dssp EEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEE-EEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred CceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCccc-ccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEE
Confidence 456789999999999999999999999999988765533 3345679999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhh---hhhhcccccchhh
Q psy10160 218 EGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAA---DKKRRSRRSLSVV 294 (558)
Q Consensus 218 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~---~~~~~grth~q~a 294 (558)
..++ .+...+ ... .+..|. .....|.+.|.|+|.+.|++++........ .....+...+..+
T Consensus 310 ~~~p---~~~~~~---~~~------~v~~g~---~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v 374 (404)
T 3p3y_A 310 KAAP---YWLDEP---KNL------ILAPGE---DGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDT 374 (404)
T ss_dssp EEEE---EEEECC---CCE------EECTTC---CEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSC
T ss_pred eCCC---eeeccC---Ccc------eeecCC---cEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeec
Confidence 7643 211111 101 122223 333556666899999999998766543321 1111233445555
Q ss_pred hhhhHHHhhc
Q psy10160 295 NKWSLRQAFT 304 (558)
Q Consensus 295 ~~~t~g~~~~ 304 (558)
.....|.|..
T Consensus 375 ~~~d~G~Y~C 384 (404)
T 3p3y_A 375 QISSRAVYQC 384 (404)
T ss_dssp CSSCCCEEEE
T ss_pred CHHHCEEEEE
Confidence 5555555443
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-22 Score=196.88 Aligned_cols=205 Identities=14% Similarity=0.127 Sum_probs=140.4
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceEEE--EEEEEeCCCCccCC-CCccccC-ceeEEec-cCCCCCCcEEEEeCCc
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAVSW--TVTLQALPSEKVAD-PNAIDYG-TILSSAF-PSESASPVVTQTTTTT 87 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~--~l~V~~~p~~~~~~-~~~v~~~-~~~~~~~-~~~~p~p~v~W~~~~~ 87 (558)
+++|.|.+++.+|+|.|+|.+.+..+...+. .|.+...|...... ...+..+ ...+.|. ..+.|.|.+.|++++.
T Consensus 78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~ 157 (313)
T 4fqp_A 78 NASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLG 157 (313)
T ss_dssp BCCEEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTC
T ss_pred ceEEEECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCc
Confidence 4689999999999999999987644433333 44444444332222 2223333 4445555 4578999999999987
Q ss_pred ccCCCCceee---cccc---ce---------eeceeEEeeccce--eeEEeeeceeeeCcEEEec-CCceEeeCCCcEEE
Q psy10160 88 TEATSPHVYA---ALTH---CV---------PWSNVCLFGARSG--YLKETQNGGYLVPVKVNIT-LETQVFGVGSDISI 149 (558)
Q Consensus 88 ~~~~~~~~~~---g~~~---~~---------~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~-~~~~~v~~G~~v~L 149 (558)
.+........ +.+. .+ ...+.|.+.+..+ .......+.+..||.+.+. .....+.+|+.+.|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l 237 (313)
T 4fqp_A 158 GMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATL 237 (313)
T ss_dssp CEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEE
T ss_pred cccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEE
Confidence 6643322211 1000 01 1135677776533 2334445556677877654 44555677899999
Q ss_pred EeEeeccCCC-eEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccC
Q psy10160 150 PCDVDGYPIP-QVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIF 221 (558)
Q Consensus 150 ~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 221 (558)
.|.+.|+|.| .|.|+|+|..+.... ...+++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.+.|
T Consensus 238 ~C~~~g~P~p~~v~W~~~~~~l~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 306 (313)
T 4fqp_A 238 TCDARSNPEPTGYNWSTTMGPLPPFA----VAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGP 306 (313)
T ss_dssp EEEEEEESCCCEEEEEETTBSCCTTE----EEETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred EEEecCCCCCcEEEEEECCEECCCce----EEeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCC
Confidence 9999999999 699999998886532 2346789999999999999999999999999999999997543
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=224.93 Aligned_cols=274 Identities=19% Similarity=0.273 Sum_probs=186.9
Q ss_pred CceEecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCC-Ccccc-CceeEEeccCCCCCCcEEEE
Q psy10160 7 ENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADP-NAIDY-GTILSSAFPSESASPVVTQT 83 (558)
Q Consensus 7 ~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~-~~v~~-~~~~~~~~~~~~p~p~v~W~ 83 (558)
.++...+++|.|.+++.+|+|.|+|.+.|..|... ...+.|..++.....++ ..+.. ..+.+.|...+.|.|.+.|+
T Consensus 299 ~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~ 378 (816)
T 3dmk_A 299 DRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM 378 (816)
T ss_dssp SSEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEE
T ss_pred CceEeccceEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcCCCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEE
Confidence 45556778999999999999999999999988763 45566654443333222 22444 46678999999999999999
Q ss_pred eCCcccCCCCce---------eeccccceeeceeEEeeccceeeEEeeecee---eeCcEEEecCCceEeeCCCcEEEEe
Q psy10160 84 TTTTTEATSPHV---------YAALTHCVPWSNVCLFGARSGYLKETQNGGY---LVPVKVNITLETQVFGVGSDISIPC 151 (558)
Q Consensus 84 ~~~~~~~~~~~~---------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~v~~G~~v~L~C 151 (558)
+++..+..+... ..|.|.|. +.+..+.........+ ..||.+...+....+.+|+.+.|.|
T Consensus 379 k~g~~~~~~~~~L~i~~v~~~d~G~Y~C~-------a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C 451 (816)
T 3dmk_A 379 KDGKAIGHSESVLRIESVKKEDKGMYQCF-------VRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKC 451 (816)
T ss_dssp ETTEECSCCSSEEEESSCCGGGCEEEEEE-------EECSSCEEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEE
T ss_pred ECCEECCCCCCEEEEcCCCHHHCEEEEEE-------EECCCCcEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEE
Confidence 998877654332 24555554 4444443333333222 3577777778888899999999999
Q ss_pred EeeccCCCeEEEEECCEEeccCCceEEE----ccCC----eEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccCCC
Q psy10160 152 DVDGYPIPQVFWYKDGQVIENDGVHYRI----TESN----RLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIH 223 (558)
Q Consensus 152 ~~~g~P~p~i~W~~~g~~l~~~~~~~~~----~~~~----sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 223 (558)
.+.|+|.|.+.|+++|..+.... ++.. ..++ +|.|.+++.+|+|.|+|.|.|..|....++.|.|..++
T Consensus 452 ~~~g~p~p~v~W~~~g~~l~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p-- 528 (816)
T 3dmk_A 452 VAGGNPTPEISWELDGKKIANND-RYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP-- 528 (816)
T ss_dssp EEECSSCCEEEEEETTEECCSCT-TEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSC--
T ss_pred EEecCCCCEEEEEECCEECCCCC-CcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCC--
Confidence 99999999999999999987654 3332 2222 59999999999999999999999999999999997543
Q ss_pred CCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhh-hhhhhcccccchhhh-hhhHHH
Q psy10160 224 PSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAA-ADKKRRSRRSLSVVN-KWSLRQ 301 (558)
Q Consensus 224 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~-~~~~~~grth~q~a~-~~t~g~ 301 (558)
.+... .. ..+. . +......|.+.+.|.+.+.|++++....... ......|...+..+. ....|.
T Consensus 529 -~~~~~---~~-~~v~------~---G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~~~~d~G~ 594 (816)
T 3dmk_A 529 -YIRQM---EK-KAIV------A---GETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQAT 594 (816)
T ss_dssp -EECCC---CC-EEEE------T---TCCEEEECCEECSSEEEEEEEETTEESCCSTTEEECTTSEEEESSCCHHHHCEE
T ss_pred -eeEcc---CC-eEEe------c---CCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEecCCeEEEEecCccccCEE
Confidence 21111 11 1121 2 3334466777789999999999876543322 222223444444443 344554
Q ss_pred hhc
Q psy10160 302 AFT 304 (558)
Q Consensus 302 ~~~ 304 (558)
|..
T Consensus 595 Y~C 597 (816)
T 3dmk_A 595 YTC 597 (816)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-22 Score=210.53 Aligned_cols=275 Identities=13% Similarity=0.077 Sum_probs=179.5
Q ss_pred eEecCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEeCCCCccCCC-CccccC-ceeEEeccCCCCCCcEEEEe-C
Q psy10160 9 YELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADP-NAIDYG-TILSSAFPSESASPVVTQTT-T 85 (558)
Q Consensus 9 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~~p~~~~~~~-~~v~~~-~~~~~~~~~~~p~p~v~W~~-~ 85 (558)
....+++|.|.+++.+|+|.|+|.+.| |...+..|.|..+|.....++ ..+..| .+.+.|...+.|.|.+.|++ +
T Consensus 75 ~~~~~~~L~I~~~~~~D~G~Y~C~a~n--g~~~~~~l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~ 152 (524)
T 2ec8_A 75 NENKQNEWITEKAEATNTGKYTCTNKH--GLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQ 152 (524)
T ss_dssp EEECSSEEEESSCCSTTCEEEEEEETT--SCEEEEEEECCCSSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSS
T ss_pred ccCccceEEEcccchhhCEEEEEeecC--CcceEEEEEECCCCcccccccceEEEcCCeEEEECcCCCCccceEEEEccC
Confidence 345678999999999999999999999 654466666655554442222 234444 66688888887779999988 6
Q ss_pred CcccCCCCcee----------------ec-cccceeeceeEEeeccceeeEE-eeecee----eeCcEEEecCCceEeeC
Q psy10160 86 TTTEATSPHVY----------------AA-LTHCVPWSNVCLFGARSGYLKE-TQNGGY----LVPVKVNITLETQVFGV 143 (558)
Q Consensus 86 ~~~~~~~~~~~----------------~g-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~p~~~~~~~~~~~v~~ 143 (558)
+..+..+.+.. .| .|.|.+.+. .+.... ...+.+ ..||.+...+....+.+
T Consensus 153 g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~-------~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~ 225 (524)
T 2ec8_A 153 GKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQE-------GKSVLSEKFILKVRPAFKAVPVVSVSKASYLLRE 225 (524)
T ss_dssp SCCCCSSCEEEEETTTEEEEESCCGGGTTCEEEEEEC-----------CCCCCCEECCEECCCCSCCEEECSCSEEEEET
T ss_pred CcCcCCCCceeECCCccEEEeccchhhCCceEEEEEEEC-------CceEEEEEEEEEEEeCCCCCCcEEecCCcceEEc
Confidence 66554433321 34 555554433 221111 122222 36788888888888999
Q ss_pred CCcEEEEeEeeccCCCe-EEEEECCEEe--ccCCceEEE------ccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEE
Q psy10160 144 GSDISIPCDVDGYPIPQ-VFWYKDGQVI--ENDGVHYRI------TESNRLHINQANATDSGEYRCVASNSYTSDENAVT 214 (558)
Q Consensus 144 G~~v~L~C~~~g~P~p~-i~W~~~g~~l--~~~~~~~~~------~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 214 (558)
|+.+.|.|.+.|.|.|. +.|++++..+ .... +... ..+++|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus 226 G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 304 (524)
T 2ec8_A 226 GEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKY-NSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTT 304 (524)
T ss_dssp TSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEE-EEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEE
T ss_pred CCcEEEEEEEecCCCcEEEEEEeCCCCCcccccc-ccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEE
Confidence 99999999999999997 9999999873 2211 2222 23458999999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCc-ccccchhhhhhhhhhhhh---------
Q psy10160 215 IRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSY-GPHIKRAVEAEAAAADKK--------- 284 (558)
Q Consensus 215 l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~-~~w~~~~l~~~~~~~~~~--------- 284 (558)
|.|..++ .+...+..... ..+..|.... ..|.+.|.|+|. +.|++++...........
T Consensus 305 l~V~~~p---~~~~~~~~~~~------~~v~~G~~v~---l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~ 372 (524)
T 2ec8_A 305 LEVVDKG---FINIFPMINTT------VFVNDGENVD---LIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIR 372 (524)
T ss_dssp EEEESSC---EEEEEESSCSE------EEECTTCCEE---EEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCE
T ss_pred EEEeccC---ceEeecCCCce------EEEcCCCcEE---EEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCce
Confidence 9997543 22211111011 1123333344 455566899999 999999766543321111
Q ss_pred hcccccchhhhhhhHHHhhcc
Q psy10160 285 RRSRRSLSVVNKWSLRQAFTT 305 (558)
Q Consensus 285 ~~grth~q~a~~~t~g~~~~~ 305 (558)
..+..++..+.....|.|...
T Consensus 373 ~~~~L~i~~v~~~d~G~Y~C~ 393 (524)
T 2ec8_A 373 YVSELHLTRLKGTEGGTYTFL 393 (524)
T ss_dssp EEEEEEECSCCGGGCEEEEEE
T ss_pred eEEEEEEeecCcccCeEEEEE
Confidence 123456666667777766553
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-21 Score=198.75 Aligned_cols=212 Identities=13% Similarity=0.193 Sum_probs=157.0
Q ss_pred ceEe-cCCeEEEcCCCCCC-CEEEEEEEEeCCcceE----EEEEEEEeCCCCc------cCCC-----Ccccc-CceeEE
Q psy10160 8 NYEL-NKNMLTIKRVEPER-LGAYTCQAYNGLGRAV----SWTVTLQALPSEK------VADP-----NAIDY-GTILSS 69 (558)
Q Consensus 8 r~~~-~~~~L~I~~v~~~D-~G~Y~C~a~n~~g~~~----s~~l~V~~~p~~~------~~~~-----~~v~~-~~~~~~ 69 (558)
++.. .+++|.|.+++.+| +|.|+|.+.|..|... ...+.|...+... ..++ ..+.. ..+.+.
T Consensus 164 ~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~ 243 (404)
T 3p3y_A 164 RVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLE 243 (404)
T ss_dssp SEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEE
T ss_pred cEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEE
Confidence 4443 57899999999999 5999999999887643 2344444322111 1111 11333 456689
Q ss_pred eccCCCCCCcEEEEeCCcccCCCCceeeccccce---------eeceeEEeeccceeeEEeeeceeeeCcEEEecCCceE
Q psy10160 70 AFPSESASPVVTQTTTTTTEATSPHVYAALTHCV---------PWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQV 140 (558)
Q Consensus 70 ~~~~~~p~p~v~W~~~~~~~~~~~~~~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 140 (558)
|...+.|.|.+.|++++..+.............+ .-.|.|.+.+..+.......+.+..+|.+...+....
T Consensus 244 C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~ 323 (404)
T 3p3y_A 244 CIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLI 323 (404)
T ss_dssp CCBCCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEECCCCEE
T ss_pred EEECCCCCCcEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeeccCCcce
Confidence 9999999999999999988765543322111112 2245677777777666666677778888888888899
Q ss_pred eeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCc-eEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEec
Q psy10160 141 FGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV-HYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~-~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 219 (558)
+.+|+.+.|.|.+.|+|.|.+.|+++|..+..... ......+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|.+
T Consensus 324 v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~d 403 (404)
T 3p3y_A 324 LAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403 (404)
T ss_dssp ECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred eecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 99999999999999999999999999999876431 11223456899999999999999999999999999999999853
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.4e-22 Score=193.14 Aligned_cols=205 Identities=16% Similarity=0.191 Sum_probs=141.0
Q ss_pred ecCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEeCCCCccCCCC-ccccC-ceeEEeccCCCCC-CcEEEE-eCC
Q psy10160 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPN-AIDYG-TILSSAFPSESAS-PVVTQT-TTT 86 (558)
Q Consensus 11 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~~p~~~~~~~~-~v~~~-~~~~~~~~~~~p~-p~v~W~-~~~ 86 (558)
..+++|.|.+++.+|+|.|+|.+.| |...++.|.|..+|......+. .+..| .+.+.|...+ |. |.+.|+ +++
T Consensus 54 ~~~~~L~i~~~~~~d~G~Y~C~~~n--g~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g 130 (290)
T 2o26_X 54 NKKNEWIQEKAEATRTGTYTCSNSN--GLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDG 130 (290)
T ss_dssp ECSSEEEETTCCGGGCEEEEEEESS--SCEEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTS
T ss_pred CCCceEEEeccCHHhCeEEEEEeeC--CccEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCC
Confidence 3458999999999999999999999 6556778888876665533322 23444 5667888774 77 999995 566
Q ss_pred cccCCCCcee----------------ec-cccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEE
Q psy10160 87 TTEATSPHVY----------------AA-LTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISI 149 (558)
Q Consensus 87 ~~~~~~~~~~----------------~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L 149 (558)
..+....+.. .| .|.|.+.+......... ...........+|.+...+....+.+|+.+.|
T Consensus 131 ~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~--~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l 208 (290)
T 2o26_X 131 KSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDK--FTLKVREAIKAIPVVSVPETSHLLKKGDTFTV 208 (290)
T ss_dssp CCCCTTCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCC--EEEEEECCCCSCCEEECSCSBCCCCTTCCEEE
T ss_pred cCCCCCCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEE--EEEEEEeCCCCCCccccCCCcceEecCCcEEE
Confidence 6655433321 34 45544443321111111 11111111236788888877788999999999
Q ss_pred EeEeeccCCCe-EEEEECCEEe----ccCC-ceE----EEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEec
Q psy10160 150 PCDVDGYPIPQ-VFWYKDGQVI----ENDG-VHY----RITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219 (558)
Q Consensus 150 ~C~~~g~P~p~-i~W~~~g~~l----~~~~-~~~----~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 219 (558)
.|.+.|.|.|. +.|++++..+ .... ..+ .....++|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.+
T Consensus 209 ~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 288 (290)
T 2o26_X 209 VCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVE 288 (290)
T ss_dssp EEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred EEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEe
Confidence 99999999997 9999998763 2211 111 122345899999999999999999999999999999998865
Q ss_pred c
Q psy10160 220 I 220 (558)
Q Consensus 220 ~ 220 (558)
+
T Consensus 289 ~ 289 (290)
T 2o26_X 289 K 289 (290)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-22 Score=212.35 Aligned_cols=248 Identities=13% Similarity=0.125 Sum_probs=168.7
Q ss_pred ceEe-cCCeEEEcCCCCCCCE-EEEEEEEeCCcceE--EEEEEEEe---CCCCccCCCCc--ccc-CceeEEeccCCCCC
Q psy10160 8 NYEL-NKNMLTIKRVEPERLG-AYTCQAYNGLGRAV--SWTVTLQA---LPSEKVADPNA--IDY-GTILSSAFPSESAS 77 (558)
Q Consensus 8 r~~~-~~~~L~I~~v~~~D~G-~Y~C~a~n~~g~~~--s~~l~V~~---~p~~~~~~~~~--v~~-~~~~~~~~~~~~p~ 77 (558)
++.. .++.|.|.+++.+|+| .|+|.+.|..|... .+.|.|.. .++.....+.. +.. ..+.+.|...+.|.
T Consensus 161 ~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~ 240 (524)
T 2ec8_A 161 RFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSS 240 (524)
T ss_dssp EEEEETTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESST
T ss_pred ceeECCCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCC
Confidence 4443 5779999999999999 99999999876653 45566652 22322233322 334 46668999989998
Q ss_pred Cc-EEEEeCCccc--CCCCcee------eccccce---------eeceeEEeeccceeeEEeeeceeeeCcEEEecCC--
Q psy10160 78 PV-VTQTTTTTTE--ATSPHVY------AALTHCV---------PWSNVCLFGARSGYLKETQNGGYLVPVKVNITLE-- 137 (558)
Q Consensus 78 p~-v~W~~~~~~~--~~~~~~~------~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-- 137 (558)
|. +.|++++..+ ....... ......+ .-.|.|.+.+..+.......+.+..+|.+...+.
T Consensus 241 p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~ 320 (524)
T 2ec8_A 241 SVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMIN 320 (524)
T ss_dssp TCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSC
T ss_pred cEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCC
Confidence 88 9999998773 2111100 0000111 1245677777776666666666777777766543
Q ss_pred -ceEeeCCCcEEEEeEeeccCCCe-EEEEECCEEeccCCceEEEccC-------CeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 138 -TQVFGVGSDISIPCDVDGYPIPQ-VFWYKDGQVIENDGVHYRITES-------NRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 138 -~~~v~~G~~v~L~C~~~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~-------~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
...+.+|+.+.|.|.+.|+|.|. +.|+|+|..+.....++....+ ++|.|.+++.+|+|.|+|.|.|..|.
T Consensus 321 ~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~ 400 (524)
T 2ec8_A 321 TTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVN 400 (524)
T ss_dssp SEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred ceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCce
Confidence 67789999999999999999999 9999999988765434443332 37999999999999999999999999
Q ss_pred eeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhh
Q psy10160 209 DENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA 276 (558)
Q Consensus 209 ~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~ 276 (558)
.+.++.|.|..+| .+...+. ... + ...|.+.|.|+|.+.|++++...
T Consensus 401 ~~~~~~l~V~~~P---~i~~~~~------------~~~---g---~l~C~~~g~P~p~i~W~~~~~~~ 447 (524)
T 2ec8_A 401 AAIAFNVYVNTKP---EILTYDR------------LVN---G---MLQCVAAGFPEPTIDWYFCPGTE 447 (524)
T ss_dssp EEEEEEEEECEEE---EEEEEEC------------CSS---S---CEEEEEEEESCCEEECCCC----
T ss_pred EEEEEEEEEecCC---eEeeccc------------CcC---c---EEEEEEEeecCCEEEEEECCCcc
Confidence 9999999996543 2111110 111 2 35566669999999999996544
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=99.88 E-value=8e-22 Score=194.80 Aligned_cols=213 Identities=14% Similarity=0.131 Sum_probs=144.8
Q ss_pred CCceEecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCC-----Ccccc-CceeEEecc------
Q psy10160 6 SENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADP-----NAIDY-GTILSSAFP------ 72 (558)
Q Consensus 6 ~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~-----~~v~~-~~~~~~~~~------ 72 (558)
..|+...+++|.|.+++.+|+|.|+|.+.|..|... +..+.+...++.....+ ..+.. ..+.+.|..
T Consensus 54 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~ 133 (315)
T 1itb_B 54 ASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKN 133 (315)
T ss_dssp TSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCCCEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCT
T ss_pred CCcEeccCCeEEECCCChhhCEEEEEEEeCCceEEEEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEeccccccc
Confidence 456777788999999999999999999999887653 34444433333322222 22333 466688877
Q ss_pred CCCCCCcEEEEeCCcccCCCCceeecccccee---------eceeEEee-ccceeeE---Eeeecee-----eeCcEEEe
Q psy10160 73 SESASPVVTQTTTTTTEATSPHVYAALTHCVP---------WSNVCLFG-ARSGYLK---ETQNGGY-----LVPVKVNI 134 (558)
Q Consensus 73 ~~~p~p~v~W~~~~~~~~~~~~~~~g~~~~~~---------~~~~~~~~-~~~~~~~---~~~~~~~-----~~p~~~~~ 134 (558)
.+.|.|.+.|++++..+.............+. -.|.|.+. +..+... ......+ ..+|.+..
T Consensus 134 ~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~ 213 (315)
T 1itb_B 134 ENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVS 213 (315)
T ss_dssp TTTCCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECS
T ss_pred CCCCCCEEEEEECCEECCCccceEeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEec
Confidence 78899999999999877543322111111111 12344444 3322221 1111111 25666665
Q ss_pred cCCc-eEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCc-----eEEEcc---------CCeEEEccCCCCC-CeEE
Q psy10160 135 TLET-QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV-----HYRITE---------SNRLHINQANATD-SGEY 198 (558)
Q Consensus 135 ~~~~-~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~-----~~~~~~---------~~sL~I~~v~~~D-~G~Y 198 (558)
.+.. ..+.+|+.+.|.|.+.|.|.|.+.|+++|..+..... ++.+.. .++|.|.+++.+| +|.|
T Consensus 214 ~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y 293 (315)
T 1itb_B 214 PANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPF 293 (315)
T ss_dssp CCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCE
T ss_pred CCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCce
Confidence 5554 4688999999999999999999999999999876541 222211 2379999999999 9999
Q ss_pred EEEEEeCCceeeEEEEEEEe
Q psy10160 199 RCVASNSYTSDENAVTIRVE 218 (558)
Q Consensus 199 ~C~a~N~~G~~~~~~~l~V~ 218 (558)
+|.|.|..|....++.|.|.
T Consensus 294 ~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 294 TCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp EEEEECTTCCEEEEEEEECC
T ss_pred EEEEecCCCceeEEEEEEec
Confidence 99999999999999999884
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-21 Score=210.42 Aligned_cols=267 Identities=13% Similarity=0.164 Sum_probs=176.5
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE--EEEEEEEeCCCCccCCCC--ccccC-ceeEEeccCCCCCCcEEEEeCC
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV--SWTVTLQALPSEKVADPN--AIDYG-TILSSAFPSESASPVVTQTTTT 86 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~--s~~l~V~~~p~~~~~~~~--~v~~~-~~~~~~~~~~~p~p~v~W~~~~ 86 (558)
.+++|.|.+++.+|+|.|+|.|.|..|... ...+.|...|......+. .+..| .+.+.|...+.|.|.+.|++++
T Consensus 340 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g 419 (642)
T 1e07_A 340 DNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDG 419 (642)
T ss_pred CCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECC
Confidence 467999999999999999999999988754 456666666654333332 23444 5668999999999999999999
Q ss_pred cccCCCCce--------eeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCC
Q psy10160 87 TTEATSPHV--------YAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPI 158 (558)
Q Consensus 87 ~~~~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~ 158 (558)
..+...... ..|.|.|.+.+....... ...+...... ...+|.+.. .....+.+|+.+.|.|.+.+ |.
T Consensus 420 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-s~~~~v~v~~-~~~~p~i~~-~~~~~v~~g~~v~l~C~~~~-~~ 495 (642)
T 1e07_A 420 NIQQHTQELFISNITEKNSGLYTCQANNSASGHSR-TTVKTITVSA-ELPKPSISS-NNSKPVEDKDAVAFTCEPEA-QN 495 (642)
T ss_pred EEcCCCceEEEccCChhhCeEEEEEEEcCCCCCcc-cceEEEEEec-cCCCceEec-CCceeecCCCeEEEEEECCC-CC
Confidence 777554432 245666555544321111 0111111110 012344433 44566789999999999995 88
Q ss_pred CeEEEEECCEEeccCCceEEEcc-CCeEEEccCCCCCCeEEEEEEEeCCceee-EEEEEEEeccCCCCCCCCCCccccce
Q psy10160 159 PQVFWYKDGQVIENDGVHYRITE-SNRLHINQANATDSGEYRCVASNSYTSDE-NAVTIRVEGIFIHPSCRDLPLFANCK 236 (558)
Q Consensus 159 p~i~W~~~g~~l~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~~~~~~p~~~~~~~~~~~~ 236 (558)
|.+.|+|+|..+..+. ++.+.. +++|.|.+++.+|+|.|+|.|.|..|... ..+.|.|..++..+... + .+ .
T Consensus 496 ~~i~W~~~g~~l~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~--~--~~-~ 569 (642)
T 1e07_A 496 TTYLWWVNGQSLPVSP-RLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIIS--P--PD-S 569 (642)
T ss_pred cEEEEEECCEeCCCCC-cEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceec--C--Cc-e
Confidence 9999999999987654 555543 56899999999999999999999999864 46888887543222111 1 11 1
Q ss_pred eEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhhhhhhcccccchhhhhhhHHHhhc
Q psy10160 237 LIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAADKKRRSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 237 ~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~~~~~~grth~q~a~~~t~g~~~~ 304 (558)
. +.. +......|.+.|.|+|.+.|++++..+.. .+...+..+.+...|.|..
T Consensus 570 ~------v~~---g~~~~l~C~~~g~p~p~v~W~~~g~~i~~-------~~~L~i~~~~~~d~G~Y~C 621 (642)
T 1e07_A 570 S------YLS---GANLNLSCHSASNPSPQYSWRINGIPQQH-------TQVLFIAKITPNNNGTYAC 621 (642)
T ss_pred e------EEc---CCcEEEEEEeccCCCCeEEEEECCEECcc-------CceEEECcccccCCeEEEE
Confidence 1 122 33444566677999999999998754321 1234444555555665554
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-21 Score=189.34 Aligned_cols=204 Identities=19% Similarity=0.257 Sum_probs=137.7
Q ss_pred CeEEEcCCCC-CCCEEEEEEEEeCCcceE-EEEEEEEeCCC------CccCCCC--ccccC-ceeEEeccCCCCCCcEEE
Q psy10160 14 NMLTIKRVEP-ERLGAYTCQAYNGLGRAV-SWTVTLQALPS------EKVADPN--AIDYG-TILSSAFPSESASPVVTQ 82 (558)
Q Consensus 14 ~~L~I~~v~~-~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~------~~~~~~~--~v~~~-~~~~~~~~~~~p~p~v~W 82 (558)
.+|.|.+++. +|+|.|+|.+.|..|... +..|.|...+. .....+. .+..| .+.+.|...+.|.|.+.|
T Consensus 63 ~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W 142 (304)
T 2yd9_A 63 AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITW 142 (304)
T ss_dssp EEEEECSCCTTTTCSEEEEEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEE
T ss_pred eEEEEecccccCCCeEEEEEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEE
Confidence 5799999998 999999999999988753 66777765421 1122222 23444 667889999999999999
Q ss_pred EeCCcccCCCC---ceeeccccce---------eeceeEEeeccceeeEEe-eecee---eeCcEEEecCCceEeeCCCc
Q psy10160 83 TTTTTTEATSP---HVYAALTHCV---------PWSNVCLFGARSGYLKET-QNGGY---LVPVKVNITLETQVFGVGSD 146 (558)
Q Consensus 83 ~~~~~~~~~~~---~~~~g~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~---~~p~~~~~~~~~~~v~~G~~ 146 (558)
++++..+.... +........+ .-.|.|.+.+..+..... ....+ ..+|.+...+....+.+|+.
T Consensus 143 ~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~ 222 (304)
T 2yd9_A 143 FKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGN 222 (304)
T ss_dssp EETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCC
T ss_pred EECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCe
Confidence 99986654331 1110001111 113455555554433211 11122 25777777777788899999
Q ss_pred EEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccC
Q psy10160 147 ISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIF 221 (558)
Q Consensus 147 v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 221 (558)
+.|.|.+.|.|.|.+.|++++..+.... ++. .....|.|.++ +|+|.|+|.|.|..|.....+.|.|.+++
T Consensus 223 v~l~C~~~g~p~p~v~W~~~~~~l~~~~-~~~-~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 293 (304)
T 2yd9_A 223 VNITCVAVGSPMPYVKWMQGAEDLTPED-DMP-VGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLP 293 (304)
T ss_dssp EEEEEEEEEESCCEEEEEETTEECSCSS-SCC-BSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC-----
T ss_pred EEEEEEEeeeCCCEEEEEECCEECCCcc-ccc-CCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCc
Confidence 9999999999999999999999987643 211 11224666655 69999999999999999999999997554
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-22 Score=209.57 Aligned_cols=228 Identities=14% Similarity=0.052 Sum_probs=149.5
Q ss_pred cCCCCCCCEEEEEEEEeCCcceEEEEEEEEeCCCCccCCC-CccccC-ceeEEeccC-CCCCCcEEEEeCCcccCCCCce
Q psy10160 19 KRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADP-NAIDYG-TILSSAFPS-ESASPVVTQTTTTTTEATSPHV 95 (558)
Q Consensus 19 ~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~~p~~~~~~~-~~v~~~-~~~~~~~~~-~~p~p~v~W~~~~~~~~~~~~~ 95 (558)
..++.+|+|.|+|.|.|..|...+..+.|.+.......++ ..+..| .+.+.|.+. +.|.|.++|++++..+......
T Consensus 196 ~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~ 275 (527)
T 3qs9_E 196 KVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYF 275 (527)
T ss_dssp SEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCCSCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEE
T ss_pred eeccccCCEEEEEEEEeCCCcccceEEEEEEeccCccCCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCcee
Confidence 3456899999999999999987653344444322222222 224444 566888886 8999999999998776543211
Q ss_pred ee---------ccccce---------eeceeEEeeccceeeEEeeeceeeeCcEEEecC--CceEeeCCCcEEEEeEeec
Q psy10160 96 YA---------ALTHCV---------PWSNVCLFGARSGYLKETQNGGYLVPVKVNITL--ETQVFGVGSDISIPCDVDG 155 (558)
Q Consensus 96 ~~---------g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~v~~G~~v~L~C~~~g 155 (558)
.. .....+ .-.|.|.+.|. ......+.+..+|.+...+ ....+.+|+.+.|.|.+.|
T Consensus 276 ~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g 352 (527)
T 3qs9_E 276 EMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKA 352 (527)
T ss_dssp EEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEE
T ss_pred eeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEe
Confidence 00 000001 11345555554 2233334444566555443 3456788999999999999
Q ss_pred cCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccCCCCCCCCCCccccc
Q psy10160 156 YPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANC 235 (558)
Q Consensus 156 ~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~ 235 (558)
+|.|.+.|+|+|..+..... + ...+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+ |.+...+
T Consensus 353 ~P~p~i~W~k~g~~l~~~~~-~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~---P~i~~~~----- 422 (527)
T 3qs9_E 353 YPQIRCTWTFSRKSFPCEQK-G-LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRK---PQVLAEA----- 422 (527)
T ss_dssp ESCCEEEEEETTEEEECBCC-B-CSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CC---CEEEECC-----
T ss_pred cCCCEEEEEECCEECcCCcc-c-ccCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecC---CeEEEeC-----
Confidence 99999999999999876442 2 235568999999999999999999999999999999999643 3322111
Q ss_pred eeEEeceeeecccceeEEEEeccCCCCCCCcccccchhh
Q psy10160 236 KLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAV 274 (558)
Q Consensus 236 ~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l 274 (558)
..++ ..|.+.|.|+|.+.|+++..
T Consensus 423 ------------~~~~---l~C~a~g~P~p~i~W~~~~~ 446 (527)
T 3qs9_E 423 ------------SASQ---ASCFSDGYPLPSWTWKKCSD 446 (527)
T ss_dssp ------------CCE------EEEECSSCCEEEEECCC-
T ss_pred ------------CCCE---EEEEEEEEcCCeEEEEECCC
Confidence 0122 36667799999999998743
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=196.77 Aligned_cols=241 Identities=12% Similarity=0.040 Sum_probs=163.4
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEeCCCCccCCCCccccC-ceeEEeccCCCCCCcEEEEeCCcccCC
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYG-TILSSAFPSESASPVVTQTTTTTTEAT 91 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~~p~~~~~~~~~v~~~-~~~~~~~~~~~p~p~v~W~~~~~~~~~ 91 (558)
+.+|.|.+++.+|+|.|+|.+.|..+ +..+.|...+ ..+...+.+| .+.+.|...+.|.|.+.|++++.....
T Consensus 66 ~~~L~I~~v~~~D~G~Y~C~~~n~~~---~~~l~V~~~~---~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~ 139 (363)
T 1wio_A 66 NFPLIIKNLKIEDSDTYICEVEDQKE---EVQLLVFGLT---ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ 139 (363)
T ss_dssp CCCEEECSCCGGGCEEEEEEETTEEE---EEEEEEEEEE---ESSCSSEESBSCEEEEEECCTTCCCCEEEECSSSCEEE
T ss_pred eEEEEECCCCHHHCEEEEEEEEECCC---cEEEEEEeCC---CCCceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcccc
Confidence 56899999999999999999998643 4445554321 2222344444 667899988899999999998755422
Q ss_pred CC---------ceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeec-----cC
Q psy10160 92 SP---------HVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDG-----YP 157 (558)
Q Consensus 92 ~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g-----~P 157 (558)
.. ....|.|.|.+. +............+..+|.. +....+.+|+.+.|.|.+.| +|
T Consensus 140 ~~~~L~i~~v~~~d~G~Y~C~a~-------~~~~~~~~~~~l~v~~~p~~---~~~~~~~~G~~v~l~C~~~~~~~~~~P 209 (363)
T 1wio_A 140 GGKTLSVSQLELQDSGTWTCTVL-------QNQKKVEFKIDIVVLAFQKA---SSIVYKKEGEQVEFSFPLAFTVEKLTG 209 (363)
T ss_dssp ESSEEEECSBCGGGCEECEEEEE-------ETTEEEEECCEECEECCSCS---EEEEEEETBCCEEEECCCCCCCCSSCE
T ss_pred cceEEEEeeCChhcCCEEEEEEe-------cCCCeEEEEEEEEEecCCCC---CCceEEecCCEEEEEEEEecccccCCC
Confidence 11 122556666554 33333333333333333321 24556789999999998888 88
Q ss_pred CCeEEEEECCEEeccC-------CceEEEc-----------c--CCeEEEccCCCCCCeEEEEEEEeC--CceeeEEEEE
Q psy10160 158 IPQVFWYKDGQVIEND-------GVHYRIT-----------E--SNRLHINQANATDSGEYRCVASNS--YTSDENAVTI 215 (558)
Q Consensus 158 ~p~i~W~~~g~~l~~~-------~~~~~~~-----------~--~~sL~I~~v~~~D~G~Y~C~a~N~--~G~~~~~~~l 215 (558)
.|.+.|+++|..+... +.++.+. . ..+|.|.+++.+|+|.|+|.|.|. .|.....+.|
T Consensus 210 ~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l 289 (363)
T 1wio_A 210 SGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL 289 (363)
T ss_dssp EEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEE
T ss_pred ceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeE
Confidence 9999999999887652 3355442 2 348999999999999999999999 9998999999
Q ss_pred EEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCc--ccccchhhhhhhhhhhhhhcccccchh
Q psy10160 216 RVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSY--GPHIKRAVEAEAAAADKKRRSRRSLSV 293 (558)
Q Consensus 216 ~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~--~~w~~~~l~~~~~~~~~~~~grth~q~ 293 (558)
.|.... |.... ..|.+.|.|+|. +.|++++..... .++..+..
T Consensus 290 ~V~~v~-------------------------g~~~~---l~C~~~g~p~p~~~i~W~~~~~~~~~-------~~~l~i~~ 334 (363)
T 1wio_A 290 VVMRAT-------------------------QLQKN---LTCEVWGPTSPKLMLSLKLENKEAKV-------SKREKAVW 334 (363)
T ss_dssp EEEEEC-------------------------CCSSS---EEEEEESSCCTTCCEEEECSSSSCSE-------EESSSEEE
T ss_pred EEEEec-------------------------CCCee---EEEEEccccCCCccEEEEeCCCceee-------eeeeeeee
Confidence 986211 12233 445556889998 999999754432 23344555
Q ss_pred hhhhhHHHhhc
Q psy10160 294 VNKWSLRQAFT 304 (558)
Q Consensus 294 a~~~t~g~~~~ 304 (558)
+.+...|.|..
T Consensus 335 v~~~d~G~Y~C 345 (363)
T 1wio_A 335 VLNPEAGMWQC 345 (363)
T ss_dssp ESSCCSEEEEE
T ss_pred eccccceeEEE
Confidence 66666665554
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-21 Score=187.13 Aligned_cols=203 Identities=17% Similarity=0.168 Sum_probs=133.4
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE--EEEEEEEeC-CCC-ccCCC-----CccccC-ceeEEeccCCCCCCcEEEE
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV--SWTVTLQAL-PSE-KVADP-----NAIDYG-TILSSAFPSESASPVVTQT 83 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~--s~~l~V~~~-p~~-~~~~~-----~~v~~~-~~~~~~~~~~~p~p~v~W~ 83 (558)
++|.|.+++.+|+|.|+|.|.|..|... +..+.|.+. |.. ..... ..+.+| .+.+.|.+. .|.|.++|+
T Consensus 51 ~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~ 129 (289)
T 3mjg_X 51 SVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLH 129 (289)
T ss_dssp EEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEE
T ss_pred EEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEE
Confidence 5899999999999999999999887632 345555554 222 22111 124444 556788777 788999999
Q ss_pred eCCcccCCCCc----------eeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEe
Q psy10160 84 TTTTTEATSPH----------VYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDV 153 (558)
Q Consensus 84 ~~~~~~~~~~~----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~ 153 (558)
+.+........ ...|.|.|.+.+...........+.... ..+|.+...+....+.+|+.+.|.|.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~----~~~p~i~~~~~~~~v~~G~~v~L~C~~ 205 (289)
T 3mjg_X 130 EKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQ----VSSINVSVNAVQTVVRQGENITLMCIV 205 (289)
T ss_dssp ESSCCSCCCCCEETTTEEEECCCSSEEEEEEEETTEEEECCCEEEEECC----CCCCCCEEEESCSEEETTSCEEEEEEE
T ss_pred eCCCCCccceeecCCcCeeeeccCcEEEEEEEeCCceeeeeeEEEEecC----CCCCCcEEeCCcceeEcCCCEEEEEEE
Confidence 97633322211 1246666665543322222211111111 146666676667788999999999999
Q ss_pred eccCCCeEEEEECCEEeccCCc-eEEEc------cCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccC
Q psy10160 154 DGYPIPQVFWYKDGQVIENDGV-HYRIT------ESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIF 221 (558)
Q Consensus 154 ~g~P~p~i~W~~~g~~l~~~~~-~~~~~------~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 221 (558)
.|+|.|.+.|++++........ ..... ..++|.|.+++.+|+|.|+|.|.|..|....++.|+|.+.+
T Consensus 206 ~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~ 280 (289)
T 3mjg_X 206 IGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVE 280 (289)
T ss_dssp ESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC
T ss_pred CCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEe
Confidence 9999999999987754332111 11111 22589999999999999999999999999999999997655
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.4e-22 Score=195.01 Aligned_cols=206 Identities=17% Similarity=0.172 Sum_probs=140.7
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEe--CCCCccCC-CCcccc-CceeEEeccCC----------CCC
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQA--LPSEKVAD-PNAIDY-GTILSSAFPSE----------SAS 77 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~--~p~~~~~~-~~~v~~-~~~~~~~~~~~----------~p~ 77 (558)
.+.+|.|.+++.+|+|.|+|.+.|..|... ..+.|.+ .|...... ...+.. ....+.|...+ .|.
T Consensus 59 ~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~-~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~ 137 (317)
T 2y25_A 59 GICTLLITEFSKKDAGIYEVILKDDRGKDK-SRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVED 137 (317)
T ss_dssp CCEEEEETTCCSTTCSCEEEEEESSSCEEE-EEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSS
T ss_pred CeEEEEEccCCcccCeEEEEEEECCCCcEE-EEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCC
Confidence 345999999999999999999999888653 2333322 22111000 111122 23334554444 689
Q ss_pred CcEEEEeCCcccCCCCceeeccccc---e---------eeceeEEeeccceeeEEeeeceee------------------
Q psy10160 78 PVVTQTTTTTTEATSPHVYAALTHC---V---------PWSNVCLFGARSGYLKETQNGGYL------------------ 127 (558)
Q Consensus 78 p~v~W~~~~~~~~~~~~~~~g~~~~---~---------~~~~~~~~~~~~~~~~~~~~~~~~------------------ 127 (558)
|.+.|++++..+..+.+........ + .-.|.|.+.+..+.........+.
T Consensus 138 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~ 217 (317)
T 2y25_A 138 LKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIA 217 (317)
T ss_dssp CEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccC
Confidence 9999999998887655443211111 1 124566666665544433322211
Q ss_pred --eCcEE-EecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccC-C---eEEEccCCCCCCeEEEE
Q psy10160 128 --VPVKV-NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES-N---RLHINQANATDSGEYRC 200 (558)
Q Consensus 128 --~p~~~-~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~-~---sL~I~~v~~~D~G~Y~C 200 (558)
.+|.+ ...+....+.+|+.+.|.|.+.|+|.|.+.|++++..+..+. ++.+... + +|.|.+++.+|+|.|+|
T Consensus 218 ~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 296 (317)
T 2y25_A 218 EKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDD-HCNLKFEAGRTAYFTINGVSTADSGKYGL 296 (317)
T ss_dssp TTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCS-SEEECCBTTTEEEEEEBSCCSTTCEEEEE
T ss_pred cCCCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCC-cEEEEEcCCCEEEEEECCCCHHHCEEEEE
Confidence 12333 334556788999999999999999999999999999987654 5555443 4 89999999999999999
Q ss_pred EEEeCCceeeEEEEEEEec
Q psy10160 201 VASNSYTSDENAVTIRVEG 219 (558)
Q Consensus 201 ~a~N~~G~~~~~~~l~V~~ 219 (558)
.|.|..|..+..+.|.|..
T Consensus 297 ~a~N~~g~~~~~~~l~V~~ 315 (317)
T 2y25_A 297 VVKNKYGSETSDFTVSVFI 315 (317)
T ss_dssp EEEETTEEEEEEEEEEEEC
T ss_pred EEEeCCCeEEEEEEEEEEc
Confidence 9999999999999999964
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-21 Score=196.79 Aligned_cols=277 Identities=14% Similarity=0.109 Sum_probs=167.3
Q ss_pred ecCCeEEEcCCCCCCCEEEEEEEEeCCcceEE--EEEEEEeCCCCccC-CCCccccC-ceeEEecc-CCCCCCcEEEEeC
Q psy10160 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAVS--WTVTLQALPSEKVA-DPNAIDYG-TILSSAFP-SESASPVVTQTTT 85 (558)
Q Consensus 11 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s--~~l~V~~~p~~~~~-~~~~v~~~-~~~~~~~~-~~~p~p~v~W~~~ 85 (558)
..+++|.|.+++.+|+|.|+|.+.|..|...+ ..+.|.+.+.+... ....+..| .+.+.|.. .+.|.|.+.|+++
T Consensus 59 ~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~ 138 (395)
T 1bih_A 59 KDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKR 138 (395)
T ss_dssp TTSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCEEESCCEEEEEEE
T ss_pred cCCceEEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCCCCCCCeEEEEec
Confidence 35679999999999999999999998887643 45555443222221 12234445 55577874 6789999999998
Q ss_pred Cc---ccCC----CCceeeccccce---------ee---ceeEEeeccceeeEEee----ecee---------eeCcEEE
Q psy10160 86 TT---TEAT----SPHVYAALTHCV---------PW---SNVCLFGARSGYLKETQ----NGGY---------LVPVKVN 133 (558)
Q Consensus 86 ~~---~~~~----~~~~~~g~~~~~---------~~---~~~~~~~~~~~~~~~~~----~~~~---------~~p~~~~ 133 (558)
+. .... ..+......+.+ .- .+.|.+.+..+...... ...+ ..+|.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~- 217 (395)
T 1bih_A 139 LSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY- 217 (395)
T ss_dssp ETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE-
T ss_pred CCCcCcccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee-
Confidence 61 1110 111110000011 11 34455544433211100 0000 012333
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCC-ceEEEc---cCCeEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG-VHYRIT---ESNRLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~-~~~~~~---~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
.+....+.+|+.+.|.|.+.|+|.|.+.|+|++..+.... .++... ...+|.|.+++.+|+|.|+|.|.|..|..
T Consensus 218 -~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 296 (395)
T 1bih_A 218 -VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP 296 (395)
T ss_dssp -ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSC
T ss_pred -cCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCc
Confidence 3567788999999999999999999999999999886532 233221 12379999999999999999999999997
Q ss_pred eE-EEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhhhhhhccc
Q psy10160 210 EN-AVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAADKKRRSR 288 (558)
Q Consensus 210 ~~-~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~~~~~~gr 288 (558)
.. .+.|.|..+| .+...+ .... .+.. +......|.+.|.|+|.+.|++++....... -....+.
T Consensus 297 ~~~~~~l~V~~~P---~~~~~~---~~~~-----~~~~---g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~-~~~~~~~ 361 (395)
T 1bih_A 297 QKHSLKLTVVSAP---KYEQKP---EKVI-----VVKQ---GQDVTIPCKVTGLPAPNVVWSHNAKPLSGGR-ATVTDSG 361 (395)
T ss_dssp EEEEEEEEEEEEE---EEEECC---CSEE-----EECT---TSCEEEECEEEEESCCCCEEEETTEECCSSS-EEEETTE
T ss_pred eEEEEEEEEEcCC---ccccCC---Ccce-----EecC---CCeEEEEEEECcccCCeeEEEECCEECCCCc-eEEECCE
Confidence 65 8899997543 222111 1001 1222 3334456666689999999999976543221 1111234
Q ss_pred ccchhhhhhhHHHhhc
Q psy10160 289 RSLSVVNKWSLRQAFT 304 (558)
Q Consensus 289 th~q~a~~~t~g~~~~ 304 (558)
..+..+.....|.|..
T Consensus 362 L~i~~~~~~d~G~Y~C 377 (395)
T 1bih_A 362 LVIKGVKNGDKGYYGC 377 (395)
T ss_dssp EEESSCCSTTCEEEEE
T ss_pred EEEeeCCcccCEEEEE
Confidence 4445555555555443
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-22 Score=195.99 Aligned_cols=206 Identities=14% Similarity=0.170 Sum_probs=141.6
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceE--EEEEEEEeCCCCcc-CCCCcc--ccC-ceeEEec-cCCCCCCcEEEEeC
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAV--SWTVTLQALPSEKV-ADPNAI--DYG-TILSSAF-PSESASPVVTQTTT 85 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~--s~~l~V~~~p~~~~-~~~~~v--~~~-~~~~~~~-~~~~p~p~v~W~~~ 85 (558)
+++|.|.+++.+|+|.|+|.|.|..+... +..+.+.+.|.... ..+..+ ..+ .+.+.|. ..+.|.|.++|+++
T Consensus 73 ~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~ 152 (308)
T 4fom_A 73 DATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGD 152 (308)
T ss_dssp BCCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCC
T ss_pred ceEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEEC
Confidence 46899999999999999999998644332 45666666554332 222222 223 4456665 56789999999999
Q ss_pred CcccCCCCceeec-c---ccce---------eeceeEEeeccce--eeEEeeeceeeeCcEEEecC-CceEeeCCCcEEE
Q psy10160 86 TTTEATSPHVYAA-L---THCV---------PWSNVCLFGARSG--YLKETQNGGYLVPVKVNITL-ETQVFGVGSDISI 149 (558)
Q Consensus 86 ~~~~~~~~~~~~g-~---~~~~---------~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~-~~~~v~~G~~v~L 149 (558)
+..+......... . ...+ .-.+.|.+.+..+ .......+.+..+|.+...+ ....+.+|+.+.|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l 232 (308)
T 4fom_A 153 LGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNL 232 (308)
T ss_dssp SSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEE
T ss_pred CcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEE
Confidence 8776543221100 0 0001 1135677766543 23334445556677765544 4455678899999
Q ss_pred EeEeeccCCC-eEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccC
Q psy10160 150 PCDVDGYPIP-QVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIF 221 (558)
Q Consensus 150 ~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 221 (558)
.|.+.|+|.| .+.|+|++..+.... ....+..|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.++|
T Consensus 233 ~C~~~g~P~p~~v~W~k~~~~~~~~~---~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P 302 (308)
T 4fom_A 233 KCNADANPPPFKSVWSRLDGQWPDGL---LASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPP 302 (308)
T ss_dssp ECCEEEESCEEEEECCBSSSCCCSSC---BCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC
T ss_pred EEEEecCCCCcEEEEEECCeECCCcE---EEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCC
Confidence 9999999999 599999998876532 12333457788999999999999999999999999999998765
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.8e-21 Score=193.03 Aligned_cols=274 Identities=17% Similarity=0.153 Sum_probs=167.7
Q ss_pred eEecCCeEEEcCCCCCC------CEEEEEEEEeCCcceE--EEEEEEEeCCCCccCC-CCccccC-ceeEEeccCCCCC-
Q psy10160 9 YELNKNMLTIKRVEPER------LGAYTCQAYNGLGRAV--SWTVTLQALPSEKVAD-PNAIDYG-TILSSAFPSESAS- 77 (558)
Q Consensus 9 ~~~~~~~L~I~~v~~~D------~G~Y~C~a~n~~g~~~--s~~l~V~~~p~~~~~~-~~~v~~~-~~~~~~~~~~~p~- 77 (558)
....+++|.|.+++.+| +|.|+|.|.|..|... .+.+.+.+.|...... +..+..| .+.+.|...+.+.
T Consensus 54 ~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~ 133 (388)
T 2v5m_A 54 QISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVAD 133 (388)
T ss_dssp EECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTT
T ss_pred EEcCCceEEecccChhhccccccCceEEEEEEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCC
Confidence 34578899999999998 9999999999998764 4555555555443332 2234444 6668888877643
Q ss_pred --CcEEEEeCCcccCCC-----Cce----------------ee-ccccceeeceeEE-eec--cceeeEEeeeceeeeCc
Q psy10160 78 --PVVTQTTTTTTEATS-----PHV----------------YA-ALTHCVPWSNVCL-FGA--RSGYLKETQNGGYLVPV 130 (558)
Q Consensus 78 --p~v~W~~~~~~~~~~-----~~~----------------~~-g~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~p~ 130 (558)
+.+.|++++..+... .+. .. |.|.|.+.+.... ... ....+..........|.
T Consensus 134 ~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~ 213 (388)
T 2v5m_A 134 FVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPR 213 (388)
T ss_dssp TEEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEE
T ss_pred CcceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCc
Confidence 789999997655321 111 12 5555554432110 000 00111111100001111
Q ss_pred EEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEec-----cCCceEEEccCCeEEEccCCCCCCeEEEEEEEeC
Q psy10160 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIE-----NDGVHYRITESNRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 131 ~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~-----~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
..........+.+|+.+.|.|.+.|+|.|.+.|+|++..+. ....++. ..+++|.|.+++.+|+|.|+|.|.|.
T Consensus 214 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~ 292 (388)
T 2v5m_A 214 TPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVK-QVSGTLIIKDAVVEDSGKYLCVVNNS 292 (388)
T ss_dssp CCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEE-EETTEEEESSCCGGGCEEEEEEEECS
T ss_pred CccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCcee-cccCEEEECcCCHHHCeEEEEEEecC
Confidence 11223345567899999999999999999999999753221 1112333 24578999999999999999999999
Q ss_pred CceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhhhhhh
Q psy10160 206 YTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAADKKR 285 (558)
Q Consensus 206 ~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~~~~~ 285 (558)
.|..+..+.|.|..++. +...+ . ...+..|.... ..|.+.|.|+|.+.|++++......
T Consensus 293 ~g~~~~~~~l~V~~~p~---~~~~~---~------~~~v~~g~~~~---l~C~~~g~p~p~i~W~~~g~~i~~~------ 351 (388)
T 2v5m_A 293 VGGESVETVLTVTAPLS---AKIDP---P------TQTVDFGRPAV---FTCQYTGNPIKTVSWMKDGKAIGHS------ 351 (388)
T ss_dssp SCEEEEEEEEEEEEEEE---EEEES---S------EEEECTTSCEE---EEEEEEEECCCEEEEEETTEECSCC------
T ss_pred CCceeEEEEEEEeCCCc---cccCC---C------cEEecCCCCEE---EEEEeccccCCeEEEEECCEECccC------
Confidence 99999999999976541 11100 0 11223333344 4555568999999999997654321
Q ss_pred cccccchhhhhhhHHHhhc
Q psy10160 286 RSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 286 ~grth~q~a~~~t~g~~~~ 304 (558)
.+..++..+.....|.|..
T Consensus 352 ~~~L~i~~v~~~d~G~Y~C 370 (388)
T 2v5m_A 352 ESVLRIESVKKEDKGMYQC 370 (388)
T ss_dssp SSEEEESSCCGGGCEEEEE
T ss_pred CCEEEEecCChhhCEEEEE
Confidence 1334444555555555543
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-21 Score=187.78 Aligned_cols=207 Identities=14% Similarity=0.087 Sum_probs=139.0
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcce-EEEEEEEEeCCCCccCCCCc--cccC-ceeEEeccCCCCCCc-EEEEeC-
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNA--IDYG-TILSSAFPSESASPV-VTQTTT- 85 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~s~~l~V~~~p~~~~~~~~~--v~~~-~~~~~~~~~~~p~p~-v~W~~~- 85 (558)
.+++|.|.+++.+|+|.|+|.+.|..|.. .+..|.|..+|......+.. +..| .+.+.|...+.+.+. +.|++.
T Consensus 49 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~ 128 (289)
T 3ejj_X 49 PGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREG 128 (289)
T ss_dssp SCCEEEESSCCGGGCEEEEEECCC-----CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGG
T ss_pred CccEEEEeeeccccCEEEEEEEeccCCcceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecC
Confidence 56799999999999999999999877654 35666666655543333332 3444 566889888877766 999874
Q ss_pred CcccCCCCce----------------eeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEE
Q psy10160 86 TTTEATSPHV----------------YAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISI 149 (558)
Q Consensus 86 ~~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L 149 (558)
+..+....+. ..|.|.|.+.++....... ............+|.+...+....+.+|+.+.|
T Consensus 129 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~--~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l 206 (289)
T 3ejj_X 129 GRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTST--GIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQI 206 (289)
T ss_dssp GEECCTTCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECC--CEEEEEESSCCCCCEEEEESSSEECCSSSCEEE
T ss_pred CeecCCCccEEECCCCCEEEeecccccCEEEEEEEEeCCCccccc--cEEEEEEECCCCCCeEEecCCceEEEeCCcEEE
Confidence 4444333222 1355555544221111111 111111111225788888888888889999999
Q ss_pred EeEeec-cCCCeEEEEECCEEeccCCceE----EEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEecc
Q psy10160 150 PCDVDG-YPIPQVFWYKDGQVIENDGVHY----RITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGI 220 (558)
Q Consensus 150 ~C~~~g-~P~p~i~W~~~g~~l~~~~~~~----~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 220 (558)
.|.+.| .|.|.+.|++++..+....... ....+++|.|.+++.+|+|.|+|.|.|..|....++.|.+...
T Consensus 207 ~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~ 282 (289)
T 3ejj_X 207 VCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVES 282 (289)
T ss_dssp EEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC--
T ss_pred EEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEec
Confidence 999999 7999999999999886532110 0112458999999999999999999999999999999998543
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.5e-21 Score=193.18 Aligned_cols=205 Identities=20% Similarity=0.246 Sum_probs=150.3
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE------EEEEEEEe------CCCCccCCCC--ccccC-ceeEEeccCCCC
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV------SWTVTLQA------LPSEKVADPN--AIDYG-TILSSAFPSESA 76 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~------s~~l~V~~------~p~~~~~~~~--~v~~~-~~~~~~~~~~~p 76 (558)
.+++|.|.+++.+|+|.|+|.+.|..|... ...+.|.. .|......+. .+..| .+.+.|...+.|
T Consensus 156 ~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p 235 (382)
T 1cs6_A 156 TTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNP 235 (382)
T ss_dssp TTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEES
T ss_pred CceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCC
Confidence 447999999999999999999999775331 12333321 1222222222 23344 566889988999
Q ss_pred CCcEEEEeCCcccCCCCcee------eccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEE
Q psy10160 77 SPVVTQTTTTTTEATSPHVY------AALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIP 150 (558)
Q Consensus 77 ~p~v~W~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~ 150 (558)
.|.+.|++++..+....... ........-.|.|.+.+..+.......+.+..+|.+...+....+.+|+.+.|.
T Consensus 236 ~~~i~W~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~ 315 (382)
T 1cs6_A 236 VPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWS 315 (382)
T ss_dssp CCEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEE
T ss_pred CCEEEEEECCcccccEEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCeEEEE
Confidence 99999999887654311100 000011122456666666666666666667778888888888889999999999
Q ss_pred eEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEe
Q psy10160 151 CDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218 (558)
Q Consensus 151 C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 218 (558)
|.+.|.|.|.+.|+|+|..+.... ++.+ .+++|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 316 C~~~g~p~p~v~W~~~g~~~~~~~-~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 381 (382)
T 1cs6_A 316 CVASGKPRPAVRWLRDGQPLASQN-RIEV-SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381 (382)
T ss_dssp CEEEEESCCEEEEEETTEECCCCS-SEEE-ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEeeeecCCEEEEEECCEECCCCc-eEEE-ECCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence 999999999999999999987654 5554 45789999999999999999999999999999999985
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.6e-22 Score=198.02 Aligned_cols=214 Identities=16% Similarity=0.144 Sum_probs=114.8
Q ss_pred CCceEecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCC---CC--ccccC-ceeEEecc-----C
Q psy10160 6 SENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVAD---PN--AIDYG-TILSSAFP-----S 73 (558)
Q Consensus 6 ~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~---~~--~v~~~-~~~~~~~~-----~ 73 (558)
..|+...+++|.|.+++.+|+|.|+|.|.|..|... +..|.|...+...... +. .+..| .+.+.|.. .
T Consensus 71 ~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~ 150 (349)
T 4dep_C 71 ENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFP 150 (349)
T ss_dssp GGCEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSC
T ss_pred CceEeecCCEEEEccCChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCccccc
Confidence 456667788999999999999999999999887664 5667776654332211 11 23445 46677864 7
Q ss_pred CCCCCcEEEEeCCcccCCCCceeecc--------ccceeeceeEEeeccc-eee---EEeeeceeee------CcEEEec
Q psy10160 74 ESASPVVTQTTTTTTEATSPHVYAAL--------THCVPWSNVCLFGARS-GYL---KETQNGGYLV------PVKVNIT 135 (558)
Q Consensus 74 ~~p~p~v~W~~~~~~~~~~~~~~~g~--------~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~------p~~~~~~ 135 (558)
+.|.|.+.|++++..+.......... .....-.|.|.+.+.. +.. .......+.. +|.+..+
T Consensus 151 g~p~~~v~W~k~~~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~ 230 (349)
T 4dep_C 151 SSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSP 230 (349)
T ss_dssp TTSCCEEEEEETTEECCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC--
T ss_pred CCCCceEEEeeCCEECCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecC
Confidence 78999999999988775533221100 0001113445555443 111 1222222222 5666555
Q ss_pred CCce--EeeCCCcEEEEeEee----ccCCCeEEEEECCEEeccCCceEEEc------------cCCeEEEccCCCCCC-e
Q psy10160 136 LETQ--VFGVGSDISIPCDVD----GYPIPQVFWYKDGQVIENDGVHYRIT------------ESNRLHINQANATDS-G 196 (558)
Q Consensus 136 ~~~~--~v~~G~~v~L~C~~~----g~P~p~i~W~~~g~~l~~~~~~~~~~------------~~~sL~I~~v~~~D~-G 196 (558)
+... .+.+|+.+.|.|.+. |.|.|.+.|+++|..+.....++... ..++|.|.+++.+|+ |
T Consensus 231 ~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G 310 (349)
T 4dep_C 231 NDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKR 310 (349)
T ss_dssp --------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC------------
T ss_pred CCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCC
Confidence 4433 678999999999999 67999999999998876522222221 123599999999999 9
Q ss_pred EEEEEEEeCCceeeEEEEEEEec
Q psy10160 197 EYRCVASNSYTSDENAVTIRVEG 219 (558)
Q Consensus 197 ~Y~C~a~N~~G~~~~~~~l~V~~ 219 (558)
.|+|.|.|..|.....+.|.|..
T Consensus 311 ~Y~C~a~N~~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 311 SYVCHARSAKGEVAKAAKVKQKV 333 (349)
T ss_dssp -CEEEEECSSCEEEEECC-----
T ss_pred cEEEEEEcCCCcEEEEEEEeeec
Confidence 99999999999999999999854
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.6e-21 Score=193.51 Aligned_cols=202 Identities=21% Similarity=0.306 Sum_probs=149.6
Q ss_pred CceE-ecCCeEEEcCCCCCCC-EEEEEEEEeCCcceEE-----EEEEEEeCC-----C--CccCCCCccccC-ceeEEec
Q psy10160 7 ENYE-LNKNMLTIKRVEPERL-GAYTCQAYNGLGRAVS-----WTVTLQALP-----S--EKVADPNAIDYG-TILSSAF 71 (558)
Q Consensus 7 ~r~~-~~~~~L~I~~v~~~D~-G~Y~C~a~n~~g~~~s-----~~l~V~~~p-----~--~~~~~~~~v~~~-~~~~~~~ 71 (558)
.++. ..+++|.|.+++.+|+ |.|+|.+.|..+.... ..+.|..+. . .....+..+..| .+.+.|.
T Consensus 156 ~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~ 235 (388)
T 2v5m_A 156 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCP 235 (388)
T ss_dssp TTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCC
T ss_pred CcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEE
Confidence 4554 3568999999999999 9999999997654321 245555431 1 112233344444 5668898
Q ss_pred cCCCCCCcEEEEeCCcccCC------CCceeeccccce---------eeceeEEeeccceeeEEeeeceeeeCcEEEecC
Q psy10160 72 PSESASPVVTQTTTTTTEAT------SPHVYAALTHCV---------PWSNVCLFGARSGYLKETQNGGYLVPVKVNITL 136 (558)
Q Consensus 72 ~~~~p~p~v~W~~~~~~~~~------~~~~~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 136 (558)
..+.|.|.+.|++++..... ..+... ....+ .-.|.|.+.|..+.......+.+..||.+...+
T Consensus 236 ~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~ 314 (388)
T 2v5m_A 236 AQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQ-VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDP 314 (388)
T ss_dssp CEEESCCEEEEEEECTTSSCEEECCCSSSEEE-ETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEES
T ss_pred CCCCCCCEEEEEecCCCCcccccccccCceec-ccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCC
Confidence 88899999999998543321 111110 01111 224567777777766666667777888888888
Q ss_pred CceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 216 (558)
....+.+|+.+.|.|.+.|+|.|.+.|+|+|..+..+ +++|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 315 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~--------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 386 (388)
T 2v5m_A 315 PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS--------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELK 386 (388)
T ss_dssp SEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCC--------SSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred CcEEecCCCCEEEEEEeccccCCeEEEEECCEECccC--------CCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEE
Confidence 8888999999999999999999999999999987542 46899999999999999999999999999999988
Q ss_pred E
Q psy10160 217 V 217 (558)
Q Consensus 217 V 217 (558)
|
T Consensus 387 V 387 (388)
T 2v5m_A 387 L 387 (388)
T ss_dssp E
T ss_pred e
Confidence 7
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=191.18 Aligned_cols=203 Identities=16% Similarity=0.153 Sum_probs=138.7
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEe------------CCCCccCCC--CccccC-ceeEEeccC-CCCC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQA------------LPSEKVADP--NAIDYG-TILSSAFPS-ESAS 77 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~------------~p~~~~~~~--~~v~~~-~~~~~~~~~-~~p~ 77 (558)
.+|.|.+++.+|+|.|+|.+.|..|...+..+.|.. .|......+ ..+..| .+.+.|... +.|.
T Consensus 58 ~~L~I~~~~~~D~G~Y~C~~~n~~g~~~s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~ 137 (312)
T 2y23_A 58 TKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGN 137 (312)
T ss_dssp EEEEESSCCGGGCEEEEEEESSSCCCCEEEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSS
T ss_pred EEEEECcCCccCCEEEEEEEEeCCCcEEEEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCC
Confidence 599999999999999999999998876666655542 444333222 223344 566888888 8899
Q ss_pred CcEEEEeCCcccCCCCceeecc-----cccee---------eceeEEeeccceeeEEeeec-------------------
Q psy10160 78 PVVTQTTTTTTEATSPHVYAAL-----THCVP---------WSNVCLFGARSGYLKETQNG------------------- 124 (558)
Q Consensus 78 p~v~W~~~~~~~~~~~~~~~g~-----~~~~~---------~~~~~~~~~~~~~~~~~~~~------------------- 124 (558)
|.+.|++++..+..+.+..... ...+. -.|.|.+.+...........
T Consensus 138 ~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (312)
T 2y23_A 138 AKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEW 217 (312)
T ss_dssp CEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccch
Confidence 9999999988776654332110 00011 13455554432222111110
Q ss_pred eeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCC-eEEEEECCEEeccCCceEEEccC-CeEEEccCCCCCCeEEEEEE
Q psy10160 125 GYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIENDGVHYRITES-NRLHINQANATDSGEYRCVA 202 (558)
Q Consensus 125 ~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~-~sL~I~~v~~~D~G~Y~C~a 202 (558)
....+|.+.... ...+.+|+.+.|.|.+.|.|.| .+.|+|++..+..+. ++.+..+ ++|.|.+++.+|+|.|+|.|
T Consensus 218 ~~~~~p~~~~~~-~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~-~~~~~~~~~~L~I~~v~~~d~G~Y~C~a 295 (312)
T 2y23_A 218 IRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE-KHDFKDGICTLLITEFSKKDAGIYEVIL 295 (312)
T ss_dssp HHHHSSEEEEEE-EEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEEC-CC----CEEEEEECSCSGGGCEEEEEEE
T ss_pred hhccCCceeecc-eEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCC-cEEEECCEEEEEECcCCHHHCEEEEEEE
Confidence 001234444333 3678899999999999999998 999999999987543 4444333 58999999999999999999
Q ss_pred EeCCceeeEEEEEEEe
Q psy10160 203 SNSYTSDENAVTIRVE 218 (558)
Q Consensus 203 ~N~~G~~~~~~~l~V~ 218 (558)
.|..|....++.|.|+
T Consensus 296 ~N~~G~~~~~~~l~i~ 311 (312)
T 2y23_A 296 KDDRGKDKSRLKLVDE 311 (312)
T ss_dssp ESTTCCEEEEEEECSC
T ss_pred EcCCCceeeeeEEEec
Confidence 9999999999888764
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-20 Score=201.85 Aligned_cols=262 Identities=13% Similarity=0.173 Sum_probs=172.7
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE--EEEEEEEeCCCCccCCCC--ccccC-ceeEEeccCCCCCCcEEEEeCC
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV--SWTVTLQALPSEKVADPN--AIDYG-TILSSAFPSESASPVVTQTTTT 86 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~--s~~l~V~~~p~~~~~~~~--~v~~~-~~~~~~~~~~~p~p~v~W~~~~ 86 (558)
.+++|.|.+++.+|+|.|+|.+.|..|... .+.|.|...|......+. .+..| .+.+.|...+.|.|.+.|++++
T Consensus 162 ~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g 241 (642)
T 1e07_A 162 GNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNG 241 (642)
T ss_pred CCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccccCCEEEEEEEcCCCCCcEEEEEECC
Confidence 467999999999999999999999888653 456666665554333332 23444 5668999989999999999998
Q ss_pred cccCCCCce--------eeccccceeeceeEEeeccceeeEEe--eeceeee---CcEEEecCCceEeeCCCcEEEEeEe
Q psy10160 87 TTEATSPHV--------YAALTHCVPWSNVCLFGARSGYLKET--QNGGYLV---PVKVNITLETQVFGVGSDISIPCDV 153 (558)
Q Consensus 87 ~~~~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---p~~~~~~~~~~~v~~G~~v~L~C~~ 153 (558)
..+...... ..|.|.|.+.+. .+..... ....+.. +|.+. .+....+..|+.+.|.|.+
T Consensus 242 ~~i~~~~~L~i~~~~~~d~G~Y~C~a~n~-------~g~~~~s~~~~v~v~~~~~~p~i~-~~~~~~~~~g~~v~l~C~~ 313 (642)
T 1e07_A 242 TFQQSTQELFIPNITVNNSGSYTCQAHNS-------DTGLNRTTVTTITVYAEPPKPFIT-SNNSNPVEDEDAVALTCEP 313 (642)
T ss_pred eEcccCCceEEecccccCCeEEEEEEEeC-------CCceEEeeeEEEEEEccCCCCEEE-cCCceeEecCCcEEEEEEC
Confidence 776543322 245666555543 3221111 1111211 23332 2334455668889999999
Q ss_pred eccCCCeEEEEECCEEeccCCceEEEc-cCCeEEEccCCCCCCeEEEEEEEeCCcee-eEEEEEEEeccCCCCCCCCCCc
Q psy10160 154 DGYPIPQVFWYKDGQVIENDGVHYRIT-ESNRLHINQANATDSGEYRCVASNSYTSD-ENAVTIRVEGIFIHPSCRDLPL 231 (558)
Q Consensus 154 ~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~~~~p~~~~~~~ 231 (558)
.|.| |.+.|+++|..+..+. ++.+. .+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..++..+... +
T Consensus 314 ~~~p-~~v~W~~~g~~l~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~--~- 388 (642)
T 1e07_A 314 EIQN-TTYLWWVNNQSLPVSP-RLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTIS--P- 388 (642)
T ss_pred CCCC-ccEEEEECCccCCCcC-CEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeec--C-
Confidence 9987 7999999999887654 44443 45789999999999999999999999875 466888887544322211 1
Q ss_pred cccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhhhhhhcccccchhhhhhhHHHhhc
Q psy10160 232 FANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAADKKRRSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 232 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~~~~~~grth~q~a~~~t~g~~~~ 304 (558)
.. .. +.. +......|.+.|.|+|.+.|++++..... .+...+..+.+...|.|..
T Consensus 389 -~~-~~------~~~---g~~~~l~C~~~g~p~~~i~W~~~g~~~~~-------~~~L~i~~~~~~d~G~Y~C 443 (642)
T 1e07_A 389 -SY-TY------YRP---GVNLSLSCHAASNPPAQYSWLIDGNIQQH-------TQELFISNITEKNSGLYTC 443 (642)
T ss_pred -Cc-eE------ecC---CCcEEEEEEcCccCCCeEEEEECCEEcCC-------CceEEEccCChhhCeEEEE
Confidence 11 11 122 34445667777999999999998754321 1234444555555555543
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=187.40 Aligned_cols=212 Identities=18% Similarity=0.271 Sum_probs=148.5
Q ss_pred CCceEe-----cCCeEEEcCCCCCCCEEEEEE-EEeCCcceE-EEEEEEEeCCCCccC-CC--CccccC---c-eeEEec
Q psy10160 6 SENYEL-----NKNMLTIKRVEPERLGAYTCQ-AYNGLGRAV-SWTVTLQALPSEKVA-DP--NAIDYG---T-ILSSAF 71 (558)
Q Consensus 6 ~~r~~~-----~~~~L~I~~v~~~D~G~Y~C~-a~n~~g~~~-s~~l~V~~~p~~~~~-~~--~~v~~~---~-~~~~~~ 71 (558)
.+|+.+ .+++|.|.+++.+|+|.|+|. +.|..|... +..+.|...|..... .+ ..+..| + +.+.|.
T Consensus 79 ~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~ 158 (331)
T 3u83_A 79 RERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCT 158 (331)
T ss_dssp TTTEEESSCSSSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEE
T ss_pred CCceEecccCCCCceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEE
Confidence 456665 357899999999999999998 455556443 567777766654222 12 223444 3 567886
Q ss_pred -cCCCCCCcEEEEeCCcccCC-------CCcee-ecc------ccceeeceeEEeeccceeeEEeeeceeeeCcEEEec-
Q psy10160 72 -PSESASPVVTQTTTTTTEAT-------SPHVY-AAL------THCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNIT- 135 (558)
Q Consensus 72 -~~~~p~p~v~W~~~~~~~~~-------~~~~~-~g~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~- 135 (558)
..+.|.|.+.|++++..... ..... ... .....-.+.|.+.+..+.......+.+..+|.+...
T Consensus 159 ~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~ 238 (331)
T 3u83_A 159 SANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEG 238 (331)
T ss_dssp EEEEBSCCEEEEEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEEC
T ss_pred ecCCcCCceEEEEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEec
Confidence 88889999999996332211 11110 000 001112456777777666666666677777777644
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCe-EEEEECCEEeccCCceEEEccCCeEEEc-cCCCCCCeEEEEEEEeCCceeeEEE
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQ-VFWYKDGQVIENDGVHYRITESNRLHIN-QANATDSGEYRCVASNSYTSDENAV 213 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~sL~I~-~v~~~D~G~Y~C~a~N~~G~~~~~~ 213 (558)
+....+.+|+.+.|.|.+.|+|.|. +.|++++..+.... ...+++|.|. +++.+|+|.|+|.|.|..|..+..+
T Consensus 239 ~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~----~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~ 314 (331)
T 3u83_A 239 FDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV----EAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQV 314 (331)
T ss_dssp CCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE----EEETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred CCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccc----eecCcEEEEeCCCccccCeEEEEEEEeccccceEEE
Confidence 4455688999999999999999998 99999998876431 2256789999 9999999999999999999999999
Q ss_pred EEEEeccC
Q psy10160 214 TIRVEGIF 221 (558)
Q Consensus 214 ~l~V~~~~ 221 (558)
.|.|.+..
T Consensus 315 ~l~V~~~~ 322 (331)
T 3u83_A 315 EVNITEAA 322 (331)
T ss_dssp EECCBC--
T ss_pred EEEEeccc
Confidence 99997543
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-21 Score=203.02 Aligned_cols=256 Identities=13% Similarity=0.123 Sum_probs=154.4
Q ss_pred CceEec----CCeEEEcCCCCCCCEEEEEEEEeCCcce----EEEEEEEEe----CCCCccCCCC-c-cccCceeEEecc
Q psy10160 7 ENYELN----KNMLTIKRVEPERLGAYTCQAYNGLGRA----VSWTVTLQA----LPSEKVADPN-A-IDYGTILSSAFP 72 (558)
Q Consensus 7 ~r~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~g~~----~s~~l~V~~----~p~~~~~~~~-~-v~~~~~~~~~~~ 72 (558)
+|+... ..+|.|.+++.+|+|.|+|.+.|..|.. ....+.|.. +|.....++. . ..++.+.+.|.+
T Consensus 59 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~ 138 (523)
T 2rcj_C 59 TRFSGSKSGTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLI 138 (523)
T ss_pred CcEEEecCCCEEEEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEe
Confidence 566532 2489999999999999999999987632 234555532 2322222222 1 234567789999
Q ss_pred CCCCCC--cEEEEeCCcccCCCCcee------ecccc---ce---------eeceeEEeeccceeeEEeeec----eeee
Q psy10160 73 SESASP--VVTQTTTTTTEATSPHVY------AALTH---CV---------PWSNVCLFGARSGYLKETQNG----GYLV 128 (558)
Q Consensus 73 ~~~p~p--~v~W~~~~~~~~~~~~~~------~g~~~---~~---------~~~~~~~~~~~~~~~~~~~~~----~~~~ 128 (558)
.+.|+| .++|++++..+..+.... .+.|. .+ .-.|.|.+.+..+........ ....
T Consensus 139 ~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~ 218 (523)
T 2rcj_C 139 SDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTK 218 (523)
T ss_pred ccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCc
Confidence 888765 899999987765432211 11111 01 113456666554432222111 1234
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCCceEEEcc------CCeEEEccCCCCCCeEEEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGVHYRITE------SNRLHINQANATDSGEYRC 200 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~------~~sL~I~~v~~~D~G~Y~C 200 (558)
+|.+........+.+|+.+.|.|.+.|. |.| .|.|+|++..+........... .++|.|.++..+| |.|+|
T Consensus 219 ~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C 297 (523)
T 2rcj_C 219 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYIC 297 (523)
T ss_pred CCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEE
Confidence 5555544444556899999999999987 888 8999999977542110001112 2379999999999 99999
Q ss_pred EEEeCCceeeEEEEEEEeccCCCCCC-CCCCccccceeEEeceeeecccceeEEEEeccCCCCCC----Ccccccchhhh
Q psy10160 201 VASNSYTSDENAVTIRVEGIFIHPSC-RDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLP----SYGPHIKRAVE 275 (558)
Q Consensus 201 ~a~N~~G~~~~~~~l~V~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~----~~~~w~~~~l~ 275 (558)
.|.|..|.......|.|... |.. ...+. .... +..|.... ..|.+.|.++ +.+.|++++..
T Consensus 298 ~a~n~~g~~~~~~~l~v~~~---P~~~~~~p~--~~~~------v~~g~~~~---l~C~~~g~~p~~~~~~v~W~k~g~~ 363 (523)
T 2rcj_C 298 NVNHKPSNTKVDKRVEPLSL---PSVFLFPPK--PKDT------LMISRTPE---VTCVVVDVSHEDPQVKFNWYVDGVQ 363 (523)
T ss_pred EEEeCCCCcceEEecCCCcC---ceEEecCCC--chhh------cccCCceE---EEEEEecccCCCCceEEEEEECCeE
Confidence 99999999877777666422 221 11110 0000 12223334 4555556543 48999999866
Q ss_pred hh
Q psy10160 276 AE 277 (558)
Q Consensus 276 ~~ 277 (558)
..
T Consensus 364 l~ 365 (523)
T 2rcj_C 364 VH 365 (523)
T ss_pred cc
Confidence 54
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-21 Score=191.79 Aligned_cols=214 Identities=19% Similarity=0.262 Sum_probs=111.8
Q ss_pred CceEecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCC---------------------CccCCC------
Q psy10160 7 ENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPS---------------------EKVADP------ 58 (558)
Q Consensus 7 ~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~---------------------~~~~~~------ 58 (558)
.|+.+.+++|.|.+++.+|+|.|+|.+.|. |... +..|.|...+. ....+.
T Consensus 54 ~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~ 132 (334)
T 1ry7_B 54 ERVLVGPQRLQVLNASHEDSGAYSCRQRLT-QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKL 132 (334)
T ss_dssp ------------------------------------------------------------------CCCCSCCTTCCCCE
T ss_pred ccEEeccceEEEeecccccCEEEEEEEEeC-CeEEEEEEEEEeccCccccccccccccccccccCCCCEEecccccccee
Confidence 455667789999999999999999999998 5442 45555543321 111111
Q ss_pred CccccC-ceeEEeccCCCCCCcEEEEeCCcccCCCCcee----eccccce---------eeceeEEeeccceeeEEeeec
Q psy10160 59 NAIDYG-TILSSAFPSESASPVVTQTTTTTTEATSPHVY----AALTHCV---------PWSNVCLFGARSGYLKETQNG 124 (558)
Q Consensus 59 ~~v~~~-~~~~~~~~~~~p~p~v~W~~~~~~~~~~~~~~----~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 124 (558)
..+..| .+.+.|...+.|.|.+.|++++..+....+.. ......+ .-.|.|.+.+..+.......+
T Consensus 133 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 212 (334)
T 1ry7_B 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTL 212 (334)
T ss_dssp EEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEE
T ss_pred EEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEE
Confidence 123334 56789999999999999999987765543221 0000111 113456666655544444333
Q ss_pred eeee----CcEEEe-cCCceEeeCCCcEEEEeEeeccCCCeEEEEE----CCEEeccCCce-EEEcc----------CCe
Q psy10160 125 GYLV----PVKVNI-TLETQVFGVGSDISIPCDVDGYPIPQVFWYK----DGQVIENDGVH-YRITE----------SNR 184 (558)
Q Consensus 125 ~~~~----p~~~~~-~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~----~g~~l~~~~~~-~~~~~----------~~s 184 (558)
.+.. +|.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|+| +|..+..++.. +.+.. ..+
T Consensus 213 ~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (334)
T 1ry7_B 213 DVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEV 292 (334)
T ss_dssp EEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCC
T ss_pred EEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccE
Confidence 3332 233332 3467778999999999999999999999999 67666544321 11111 137
Q ss_pred EEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccC
Q psy10160 185 LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIF 221 (558)
Q Consensus 185 L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 221 (558)
|.|.+++.+|+|.|+|.|.|..|....++.|.|...+
T Consensus 293 L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 329 (334)
T 1ry7_B 293 LSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAE 329 (334)
T ss_dssp EEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSC
T ss_pred EEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECC
Confidence 9999999999999999999999999999999997544
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-20 Score=185.94 Aligned_cols=206 Identities=12% Similarity=0.036 Sum_probs=138.2
Q ss_pred ecCCeEEEcCCCCCCCE-EEEEEEEeCCcceEEEE-EEEEeCCCCccCCCC--ccc-cCceeEEeccCCCC-CCcEEEEe
Q psy10160 11 LNKNMLTIKRVEPERLG-AYTCQAYNGLGRAVSWT-VTLQALPSEKVADPN--AID-YGTILSSAFPSESA-SPVVTQTT 84 (558)
Q Consensus 11 ~~~~~L~I~~v~~~D~G-~Y~C~a~n~~g~~~s~~-l~V~~~p~~~~~~~~--~v~-~~~~~~~~~~~~~p-~p~v~W~~ 84 (558)
..+++|.|.+++.+|+| .|+|.+.|..|...... ..+...|+....++. .+. +..+.+.|...+.| .|.+.|++
T Consensus 86 ~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k 165 (329)
T 3oq3_B 86 VKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYK 165 (329)
T ss_dssp EETTEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEE
T ss_pred eecceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEE
Confidence 45789999999999999 99999999987654322 233333332222221 123 34677899999999 99999999
Q ss_pred CCcccCCCCceeecccccee---------eceeEEeecc--ce----eeEEeeeceeeeCc----EEEecCCceEeeCCC
Q psy10160 85 TTTTEATSPHVYAALTHCVP---------WSNVCLFGAR--SG----YLKETQNGGYLVPV----KVNITLETQVFGVGS 145 (558)
Q Consensus 85 ~~~~~~~~~~~~~g~~~~~~---------~~~~~~~~~~--~~----~~~~~~~~~~~~p~----~~~~~~~~~~v~~G~ 145 (558)
++..+.............+. -.|.|.+.|. .+ .......+.+..++ .+. .+....+.+|+
T Consensus 166 ~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~ 244 (329)
T 3oq3_B 166 NNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGE 244 (329)
T ss_dssp TTEECCCSSSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTS
T ss_pred CCccCCCCCceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCC
Confidence 98877533222111111111 1345555543 11 11111233333333 233 66677889999
Q ss_pred cEEEEeEeeccC---CC-eEEEEECCEEeccCCceEEEc-------cCCeEEEccCCCCCCe-EEEEEEEeCCceeeEEE
Q psy10160 146 DISIPCDVDGYP---IP-QVFWYKDGQVIENDGVHYRIT-------ESNRLHINQANATDSG-EYRCVASNSYTSDENAV 213 (558)
Q Consensus 146 ~v~L~C~~~g~P---~p-~i~W~~~g~~l~~~~~~~~~~-------~~~sL~I~~v~~~D~G-~Y~C~a~N~~G~~~~~~ 213 (558)
.+.|.|.+.|.| .| .+.|++++..+...+.+.... ..++|.|.+++.+|+| .|+|.|.|..|.....+
T Consensus 245 ~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~ 324 (329)
T 3oq3_B 245 PANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTT 324 (329)
T ss_dssp CEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEE
T ss_pred CEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEE
Confidence 999999999998 77 889999998753322222111 2457999999999999 99999999999999988
Q ss_pred EEEE
Q psy10160 214 TIRV 217 (558)
Q Consensus 214 ~l~V 217 (558)
.|.|
T Consensus 325 ~l~v 328 (329)
T 3oq3_B 325 TVVL 328 (329)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8877
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-20 Score=189.85 Aligned_cols=209 Identities=17% Similarity=0.242 Sum_probs=150.4
Q ss_pred CCceEe-cCCeEEEcCCCCCCCE---EEEEEEEeCCcceE-EEEE-EEEeC--CCC---------ccCCCCccccC-cee
Q psy10160 6 SENYEL-NKNMLTIKRVEPERLG---AYTCQAYNGLGRAV-SWTV-TLQAL--PSE---------KVADPNAIDYG-TIL 67 (558)
Q Consensus 6 ~~r~~~-~~~~L~I~~v~~~D~G---~Y~C~a~n~~g~~~-s~~l-~V~~~--p~~---------~~~~~~~v~~~-~~~ 67 (558)
..++.. .+++|.|.+++.+|+| .|+|.+.|..|... .... .+... +.. .......+..| .+.
T Consensus 152 ~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~ 231 (395)
T 1bih_A 152 DRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTM 231 (395)
T ss_dssp CTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEE
T ss_pred cccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCceecCCceEEECCCcEE
Confidence 445553 6779999999999999 99999999888742 2111 11111 100 01112223344 566
Q ss_pred EEeccCCCCCCcEEEEeCCcccCCCCc--eee--cccc-ce---------eeceeEEeeccceeeEE-eeeceeeeCcEE
Q psy10160 68 SSAFPSESASPVVTQTTTTTTEATSPH--VYA--ALTH-CV---------PWSNVCLFGARSGYLKE-TQNGGYLVPVKV 132 (558)
Q Consensus 68 ~~~~~~~~p~p~v~W~~~~~~~~~~~~--~~~--g~~~-~~---------~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~ 132 (558)
+.|...+.|.|.+.|++++..+..... ... .... .+ .-.|.|.+.+..+.... ...+.+..+|.+
T Consensus 232 l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~ 311 (395)
T 1bih_A 232 IYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKY 311 (395)
T ss_dssp EEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEE
T ss_pred EEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCcc
Confidence 899999999999999999877654321 110 0000 11 12456777776665443 556666778888
Q ss_pred EecCCc-eEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeE
Q psy10160 133 NITLET-QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDEN 211 (558)
Q Consensus 133 ~~~~~~-~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~ 211 (558)
...+.. ..+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+ ++.+. +++|.|.+++.+|+|.|+|.|.|..|....
T Consensus 312 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~--~~~~~-~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~ 388 (395)
T 1bih_A 312 EQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG--RATVT-DSGLVIKGVKNGDKGYYGCRATNEHGDKYF 388 (395)
T ss_dssp EECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS--SEEEE-TTEEEESSCCSTTCEEEEEEEEETTEEEEE
T ss_pred ccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC--ceEEE-CCEEEEeeCCcccCEEEEEEEEccCCCceE
Confidence 887777 77899999999999999999999999999998653 55543 459999999999999999999999999999
Q ss_pred EEEEEE
Q psy10160 212 AVTIRV 217 (558)
Q Consensus 212 ~~~l~V 217 (558)
.+.|.|
T Consensus 389 ~~~l~V 394 (395)
T 1bih_A 389 ETLVQV 394 (395)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 998887
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-20 Score=208.69 Aligned_cols=275 Identities=17% Similarity=0.190 Sum_probs=177.1
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCCCccccC-ceeEEeccCCCCCCcEEEEeCCcccCCC
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPNAIDYG-TILSSAFPSESASPVVTQTTTTTTEATS 92 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~~~v~~~-~~~~~~~~~~~p~p~v~W~~~~~~~~~~ 92 (558)
.|.|.+++.+|+|.|+|.|.|..|... +..+.|...|.....+...+..| .+.+.|...+.|.|.+.|++++..+...
T Consensus 491 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~ 570 (816)
T 3dmk_A 491 YLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPIN 570 (816)
T ss_dssp EEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEECCCCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCS
T ss_pred EEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCeeEccCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccC
Confidence 699999999999999999999998764 56666665554333333334444 6668999999999999999998877654
Q ss_pred Cceeecccc----------ceeeceeEEeeccceee-EEeeeceeeeCcEEE-ecCCceEeeCCCcEEEEeEeeccCCC-
Q psy10160 93 PHVYAALTH----------CVPWSNVCLFGARSGYL-KETQNGGYLVPVKVN-ITLETQVFGVGSDISIPCDVDGYPIP- 159 (558)
Q Consensus 93 ~~~~~g~~~----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~-~~~~~~~v~~G~~v~L~C~~~g~P~p- 159 (558)
.+......+ ...-.|.|.+.+..+.. .......+..+|.+. ..+....+.+|+.+.|.|.+.+.|.|
T Consensus 571 ~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~ 650 (816)
T 3dmk_A 571 RKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPL 650 (816)
T ss_dssp TTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCC
T ss_pred CceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCC
Confidence 432211000 11223456666654422 222233333444433 33455668899999999999877665
Q ss_pred eEEEEECCEEeccCCceEE--Ec-cCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccCCCCCCCCCCccccce
Q psy10160 160 QVFWYKDGQVIENDGVHYR--IT-ESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCK 236 (558)
Q Consensus 160 ~i~W~~~g~~l~~~~~~~~--~~-~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~ 236 (558)
.+.|+++|..+..+..... .. ..++|.|.+++.+|+|.|+|.|.|..|....++.|.|..+| .+...+ .+ .
T Consensus 651 ~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P---~~~~~~--~~-~ 724 (816)
T 3dmk_A 651 NIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPP---RWILEP--TD-K 724 (816)
T ss_dssp EEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEE---EEEECC--CC-E
T ss_pred EEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCC---ceeeec--cc-c
Confidence 8999999988864322111 11 23479999999999999999999999999999999997553 222111 11 1
Q ss_pred eEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhh-------hhhhhcccccchhhhhhhHHHhhc
Q psy10160 237 LIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAA-------ADKKRRSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 237 ~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~-------~~~~~~grth~q~a~~~t~g~~~~ 304 (558)
. +.. +......|.+.|.|+|.+.|++++....... ......+..++..+.+...|.|..
T Consensus 725 ~------v~~---G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 790 (816)
T 3dmk_A 725 A------FAQ---GSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLC 790 (816)
T ss_dssp E------EET---TCCEEEECEEEEESCCEEECCEECSSSTTCCBCCCCBTTEEEETTEEEECSCCGGGCEEEEE
T ss_pred e------ecC---CCcEEEEEEEecCCCCeEEEEecCCCCCccccccccCCCEEecCCEEEECcCChhhCeEEEE
Confidence 1 122 3333455666799999999999864322110 111122345566666666666554
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.7e-21 Score=190.80 Aligned_cols=213 Identities=15% Similarity=0.212 Sum_probs=148.7
Q ss_pred CCceEecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCc---cCCCCccccC-ceeEEec-----cCCC
Q psy10160 6 SENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEK---VADPNAIDYG-TILSSAF-----PSES 75 (558)
Q Consensus 6 ~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~---~~~~~~v~~~-~~~~~~~-----~~~~ 75 (558)
..|+...+++|.|.+++.+|+|.|+|.+.|..|... +..|.|...+... ...+..+..| .+.+.|. ..+.
T Consensus 73 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~ 152 (339)
T 3o4o_C 73 ETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDK 152 (339)
T ss_dssp SSCEEEETTEEEESSBCTTCCEEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSS
T ss_pred cccEEeeCCeEEECCCCcccCEEEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCC
Confidence 457777889999999999999999999999888653 5666666655432 1223334444 5668888 7888
Q ss_pred CCCcEEEEeCCcccCCCCceeecc--ccce---------eeceeEEeeccce----eeEEeeeceee-----eCcEEEec
Q psy10160 76 ASPVVTQTTTTTTEATSPHVYAAL--THCV---------PWSNVCLFGARSG----YLKETQNGGYL-----VPVKVNIT 135 (558)
Q Consensus 76 p~p~v~W~~~~~~~~~~~~~~~g~--~~~~---------~~~~~~~~~~~~~----~~~~~~~~~~~-----~p~~~~~~ 135 (558)
|.|.+.|++++..+.......... ...+ .-.|.|.+.+..+ .......+.+. .+|.+...
T Consensus 153 p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~ 232 (339)
T 3o4o_C 153 TDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISP 232 (339)
T ss_dssp SCCCBCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCC
T ss_pred CCceEEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecC
Confidence 999999999988776542211100 0011 1234566655443 22222333332 35666666
Q ss_pred CCceEeeCCCcEEEEeEe---eccC-CCeEEEEECCEEeccC--------CceEEEccCC------eEEEccCCCCCC-e
Q psy10160 136 LETQVFGVGSDISIPCDV---DGYP-IPQVFWYKDGQVIEND--------GVHYRITESN------RLHINQANATDS-G 196 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~---~g~P-~p~i~W~~~g~~l~~~--------~~~~~~~~~~------sL~I~~v~~~D~-G 196 (558)
+....+.+|+.+.|.|.+ .|.| .|.+.|++++..+... +.++....++ +|.|.+++.+|. |
T Consensus 233 ~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G 312 (339)
T 3o4o_C 233 LKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHM 312 (339)
T ss_dssp SCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCC
T ss_pred CceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCc
Confidence 777788999999999999 9999 8889999999776421 2234444445 799999999997 9
Q ss_pred EEEEEEEeCCceeeEEEEEEEe
Q psy10160 197 EYRCVASNSYTSDENAVTIRVE 218 (558)
Q Consensus 197 ~Y~C~a~N~~G~~~~~~~l~V~ 218 (558)
.|+|.|.|..|..+..+.+.+.
T Consensus 313 ~Y~C~a~N~~G~~~~~~~~~~~ 334 (339)
T 3o4o_C 313 DFKCVVHNTLSFQTLRTTVKEH 334 (339)
T ss_dssp CCEEEEEETTEEECCBCCCCC-
T ss_pred cEEEEEEeccCceEEEEEhhHh
Confidence 9999999999999887776653
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=7e-21 Score=197.13 Aligned_cols=259 Identities=13% Similarity=0.161 Sum_probs=152.7
Q ss_pred CCceEec----CCeEEEcCCCCCCCEEEEEEEEeCCcceE--EEEEEEEe---CCCCccCCCC--ccccCceeEEeccCC
Q psy10160 6 SENYELN----KNMLTIKRVEPERLGAYTCQAYNGLGRAV--SWTVTLQA---LPSEKVADPN--AIDYGTILSSAFPSE 74 (558)
Q Consensus 6 ~~r~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~--s~~l~V~~---~p~~~~~~~~--~v~~~~~~~~~~~~~ 74 (558)
++|+... ..+|.|.+++.+|+|.|+|.+.|..+... ...+.|.. +|......+. .+.++.+.+.|.+.+
T Consensus 63 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g 142 (438)
T 1qgc_4 63 PDRFSGSGSRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNN 142 (438)
T ss_dssp CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEE
T ss_pred cCcEEEEccCCcEEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEcc
Confidence 3566542 34899999999999999999999876432 34555543 2222222222 234567778998877
Q ss_pred -CCCC-cEEEEeCCcccCCCCce-------eecccc---ce---------eeceeEEeeccceeeEEeeeceeeeCcEEE
Q psy10160 75 -SASP-VVTQTTTTTTEATSPHV-------YAALTH---CV---------PWSNVCLFGARSGYLKETQNGGYLVPVKVN 133 (558)
Q Consensus 75 -~p~p-~v~W~~~~~~~~~~~~~-------~~g~~~---~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 133 (558)
.|.| .++|++++..+...... ..+.|. .+ .-.|.|.+.+..+............++...
T Consensus 143 ~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~ 222 (438)
T 1qgc_4 143 FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECEVML 222 (438)
T ss_dssp EBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC-CCEE
T ss_pred ccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecccccccceeEE
Confidence 6777 89999998776554100 001110 01 113456666654432111111111122223
Q ss_pred ecCCceEeeCCCcEEEEeEeeccC--CCeEEEEEC--CEEecc----------------CCceEEEcc-----CCeEEEc
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYP--IPQVFWYKD--GQVIEN----------------DGVHYRITE-----SNRLHIN 188 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~--g~~l~~----------------~~~~~~~~~-----~~sL~I~ 188 (558)
..+....+.+|+.+.|.|.+.|.| .|.+.|+|+ +..+.. ...++.+.. ..+|.|.
T Consensus 223 ~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 302 (438)
T 1qgc_4 223 VESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMS 302 (438)
T ss_dssp EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEEC
T ss_pred ecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEEC
Confidence 345567789999999999999998 678999996 433320 123454433 2379999
Q ss_pred cCCCCCCeEEEEEEEeCCc-----eeeEEEEEEEeccC-CCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCC
Q psy10160 189 QANATDSGEYRCVASNSYT-----SDENAVTIRVEGIF-IHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQ 262 (558)
Q Consensus 189 ~v~~~D~G~Y~C~a~N~~G-----~~~~~~~l~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~ 262 (558)
+++.+|+|.|+|.|.|..+ .......|.|...+ .+|.+...+ .. ..+.. +......|.+.|.
T Consensus 303 ~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~--~~-------~~~~~---g~~v~L~C~~~g~ 370 (438)
T 1qgc_4 303 SLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLA--PG-------SAAAA---ASMVTLGCLVKGY 370 (438)
T ss_dssp SCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEEC--CC-------GGGCC---SSEEEEEEEEESC
T ss_pred CCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcC--cc-------ccccc---CCcEEEEEEeccc
Confidence 9999999999999999544 22344567775321 222221111 00 01112 3334455556576
Q ss_pred -CCC-cccccchhhhh
Q psy10160 263 -LPS-YGPHIKRAVEA 276 (558)
Q Consensus 263 -~~~-~~~w~~~~l~~ 276 (558)
|.| .+.|++++...
T Consensus 371 ~P~~~~v~W~~~g~~~ 386 (438)
T 1qgc_4 371 FPEPVTVTWNSGSLSS 386 (438)
T ss_dssp BSSCCEEEEGGGTCCS
T ss_pred cCCCcEEEEecCCCCC
Confidence 777 89999987554
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.7e-20 Score=188.12 Aligned_cols=198 Identities=12% Similarity=0.053 Sum_probs=128.2
Q ss_pred CCCCCEEEEEEEEeCCcceEEEEEEEEeCCCCccCCC-CccccC-ceeEEeccCC-CCCCcEEEEeCCcccCCCCceee-
Q psy10160 22 EPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADP-NAIDYG-TILSSAFPSE-SASPVVTQTTTTTTEATSPHVYA- 97 (558)
Q Consensus 22 ~~~D~G~Y~C~a~n~~g~~~s~~l~V~~~p~~~~~~~-~~v~~~-~~~~~~~~~~-~p~p~v~W~~~~~~~~~~~~~~~- 97 (558)
+.+|+|.|+|.|.|..|...+..+.|.+.......++ ..+.+| .+.+.|.+.+ .|.|.++|++++..+........
T Consensus 199 ~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~ 278 (423)
T 3qs7_E 199 HELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMS 278 (423)
T ss_dssp CCCCSSCEEEEEECSSCEEEEECEEEESSSCCCSSTTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEE
T ss_pred ecccCeEEEEEEEcCCCCcceeeEEEEEecCCccCCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecc
Confidence 6789999999999999987654455555433222222 224444 5668899888 67799999999887654321100
Q ss_pred --------ccccce---------eeceeEEeeccceeeEEeeeceeeeCcEEEecC--CceEeeCCCcEEEEeEeeccCC
Q psy10160 98 --------ALTHCV---------PWSNVCLFGARSGYLKETQNGGYLVPVKVNITL--ETQVFGVGSDISIPCDVDGYPI 158 (558)
Q Consensus 98 --------g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~v~~G~~v~L~C~~~g~P~ 158 (558)
.....+ .-.|.|.+.|. ......+.+..+|.+...+ ....+.+|+.+.|.|.+.|+|.
T Consensus 279 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~ 355 (423)
T 3qs7_E 279 TYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQ 355 (423)
T ss_dssp EEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESC
T ss_pred cccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCC
Confidence 000011 11346666665 3333444555666665544 3456788999999999999999
Q ss_pred CeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccCCCC
Q psy10160 159 PQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHP 224 (558)
Q Consensus 159 p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~p 224 (558)
|.|.|+|+|..+...... ......+.+.....+|+|.|+|.|.|..|..+.++.|.|.+.+.+|
T Consensus 356 p~i~W~k~g~~l~~~~~~--~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~~~ 419 (423)
T 3qs7_E 356 IRCTWTFSRKSFPCEQKG--LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHH 419 (423)
T ss_dssp CEEEEEETTEEEECBCCB--CSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--------
T ss_pred CeEEEEECCEECCCcccc--ccCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCCccc
Confidence 999999999998654210 0112233336677899999999999999999999999998766443
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-20 Score=194.11 Aligned_cols=236 Identities=11% Similarity=0.086 Sum_probs=142.2
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcce-------E--EEEEEEEeCCC--CccCCCCccccC-ceeEEeccCCC-C--CC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRA-------V--SWTVTLQALPS--EKVADPNAIDYG-TILSSAFPSES-A--SP 78 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~-------~--s~~l~V~~~p~--~~~~~~~~v~~~-~~~~~~~~~~~-p--~p 78 (558)
++|.|.+++.+|+|.|+|.|.|..|.. . ...+.|...+. .....+..+..| .+.+.|...+. | .|
T Consensus 142 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~~~ 221 (450)
T 1z7z_I 142 VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEA 221 (450)
T ss_dssp EEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEESCTTGGGC
T ss_pred eEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEeeCCCCCCce
Confidence 589999999999999999999987642 1 12333332211 111122344445 56688998888 7 78
Q ss_pred cEEEEeCCcccCCCCceeecc---------cccee--eceeEEeeccceeeEEeeeceeee--CcEEEecCCceEeeCCC
Q psy10160 79 VVTQTTTTTTEATSPHVYAAL---------THCVP--WSNVCLFGARSGYLKETQNGGYLV--PVKVNITLETQVFGVGS 145 (558)
Q Consensus 79 ~v~W~~~~~~~~~~~~~~~g~---------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~~~v~~G~ 145 (558)
.+.|++++..+.......... ..... ..+.|.+.+..+.......+.+.. +|.+.. ....+.+|+
T Consensus 222 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~--~~~~v~~G~ 299 (450)
T 1z7z_I 222 QVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVIL--TKPEVSEGT 299 (450)
T ss_dssp EEEEEETTEECCCEEEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEE--SCSEEETTC
T ss_pred EEEEeCCCEeCCceEEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEec--CCeeEeCCC
Confidence 999999987765421110000 01111 256777777766555554444444 454443 345789999
Q ss_pred cEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCc-e---eeEEEEEEEeccC
Q psy10160 146 DISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYT-S---DENAVTIRVEGIF 221 (558)
Q Consensus 146 ~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G-~---~~~~~~l~V~~~~ 221 (558)
.+.|.|.+. |.|.+.| +|..+...+ ...+|.|.++..+|+|.|+|.|.|..+ . ....+.|.|..+|
T Consensus 300 ~v~l~C~~~--p~p~i~W--~g~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P 369 (450)
T 1z7z_I 300 EVTVKCEAH--PRAKVTL--NGVPAQPLG------PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP 369 (450)
T ss_dssp EEEEEEEC--------------------C------CCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEE
T ss_pred cEEEEEecC--CCCEeEE--CCEEcCCCC------ceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCC
Confidence 999999998 9999999 777663222 234799999999999999999997665 3 3477888886554
Q ss_pred CCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhh
Q psy10160 222 IHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAV 274 (558)
Q Consensus 222 ~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l 274 (558)
.+...+.+.+ ..+.. +......|.+.|.|+|.+.|++++.
T Consensus 370 ---~~~~~~~p~~-~~~~~---------g~~~~l~C~~~g~P~p~i~W~~~g~ 409 (450)
T 1z7z_I 370 ---RLDERDCPGN-WTWPE---------NSQQTPMCQAWGNPLPELKCLKDGT 409 (450)
T ss_dssp ---ECCSTTSCSE-EEEET---------TCEECCCCCCEEESCCEEEEEETTT
T ss_pred ---ceeeccCCCc-eeEcC---------CCeEEEEEecccCCCCcEEEEECCc
Confidence 2222211111 11221 4455578888899999999999976
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-20 Score=179.73 Aligned_cols=200 Identities=13% Similarity=0.121 Sum_probs=132.8
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcce-EEEEEEEEeCCCCccCCCCc--cccC-ceeEEeccCCCCC--CcEEEEeCC-
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNA--IDYG-TILSSAFPSESAS--PVVTQTTTT- 86 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~s~~l~V~~~p~~~~~~~~~--v~~~-~~~~~~~~~~~p~--p~v~W~~~~- 86 (558)
++|.|.+++.+|+|.|+|.+.|..|.. .++.|.|..++......+.. +..| .+.+.|...+ |. |.+.|++++
T Consensus 51 ~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~ 129 (292)
T 4dkd_C 51 SILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRG 129 (292)
T ss_dssp EEEEESSCCGGGCSCEEECCCC----CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGG
T ss_pred EEEEEcccccccCEEEEEEEccCCCCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCC
Confidence 599999999999999999999977655 35566666555433333322 3444 5567787776 54 789999974
Q ss_pred cccCCCCce----------------eeccccceeeceeEEeeccceeeEE-eeeceee----eCcEEEecCCceEeeCCC
Q psy10160 87 TTEATSPHV----------------YAALTHCVPWSNVCLFGARSGYLKE-TQNGGYL----VPVKVNITLETQVFGVGS 145 (558)
Q Consensus 87 ~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~p~~~~~~~~~~~v~~G~ 145 (558)
..+....+. ..|.| .|.+.+..+.... ...+.+. .+|.+...+....+.+|+
T Consensus 130 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y-------~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~ 202 (292)
T 4dkd_C 130 RPLMRHTNYSFSPWHGFTIHRAKFIQSQDY-------QCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGE 202 (292)
T ss_dssp CCCCSSCCEECCSSSCCEETTCCGGGCSEE-------EEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSS
T ss_pred CccccCCcccccCCceEEECCCCHHHCeEE-------EEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCC
Confidence 333332222 13444 4555444332211 2222333 388888888888888999
Q ss_pred cEEEEeEeeccCC-CeEEEEECCEEeccCCc-eEE---EccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEecc
Q psy10160 146 DISIPCDVDGYPI-PQVFWYKDGQVIENDGV-HYR---ITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGI 220 (558)
Q Consensus 146 ~v~L~C~~~g~P~-p~i~W~~~g~~l~~~~~-~~~---~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 220 (558)
.+.|.|.+.|.|. +.+.|++++..+..... ++. ....++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.+.
T Consensus 203 ~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~ 282 (292)
T 4dkd_C 203 AAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVES 282 (292)
T ss_dssp CEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC---
T ss_pred CEEEEEEecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeC
Confidence 9999999999775 45888898876654321 111 012347999999999999999999999999999999999765
Q ss_pred C
Q psy10160 221 F 221 (558)
Q Consensus 221 ~ 221 (558)
.
T Consensus 283 ~ 283 (292)
T 4dkd_C 283 A 283 (292)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-19 Score=191.73 Aligned_cols=272 Identities=12% Similarity=0.091 Sum_probs=169.8
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCCCcccc-CceeEEeccCCCCC---CcEEEE-eCCcc
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPNAIDY-GTILSSAFPSESAS---PVVTQT-TTTTT 88 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~~~v~~-~~~~~~~~~~~~p~---p~v~W~-~~~~~ 88 (558)
+|.|.+++.+|+|.|+|.+.|..|... ++.|.|..+++.. ..+.. ..+.+.|.. +.+. +.+.|+ +++..
T Consensus 186 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~----~~~~~G~~v~l~C~~-~~~~~~~~~~~w~~~~g~~ 260 (585)
T 2ocw_A 186 SVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPEL----VYEDLRGSVTFHCAL-GPEVANVAKFLCRQSSGEN 260 (585)
T ss_pred EEEEccCChhHCeEEEEEeccCCccccceEEEEEccCCCce----eEEcCCCcEEEEEEc-CCCCCCceEEEEEeCCCCC
Confidence 799999999999999999999888753 5566665443221 12333 456677875 5544 567776 55521
Q ss_pred ---cCC---------CCcee------eccccce---------eeceeEEeeccceee----EEeeeceeeeCcEEEecCC
Q psy10160 89 ---EAT---------SPHVY------AALTHCV---------PWSNVCLFGARSGYL----KETQNGGYLVPVKVNITLE 137 (558)
Q Consensus 89 ---~~~---------~~~~~------~g~~~~~---------~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~~~~~ 137 (558)
+.. ..+.. .|.+ .+ .-.|.|.+.+..... .....+.+..+|.+...+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~~~p~~~~~~~ 339 (585)
T 2ocw_A 261 CDVVVNTLGKRAPAFEGRILLNPQDKDGSF-SVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPT 339 (585)
T ss_pred cceEEeCCCcCCcccCCceEeeccCCCcEE-EEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEecccccccCCc
Confidence 100 11110 0000 11 113456555532211 1334455566777777788
Q ss_pred ceEeeCCCcEEEEeEeeccCCCeE----EEEE--CCE--Eecc--------CCceEEEc---cCCe--EEEccCCCCCCe
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIPQV----FWYK--DGQ--VIEN--------DGVHYRIT---ESNR--LHINQANATDSG 196 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p~i----~W~~--~g~--~l~~--------~~~~~~~~---~~~s--L~I~~v~~~D~G 196 (558)
...+.+|+.+.|.|.+.|.|.|.+ .|++ +|. .+.. ...++.+. .+++ |.|.+++.+|+|
T Consensus 340 ~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G 419 (585)
T 2ocw_A 340 VVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAG 419 (585)
T ss_pred ceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCE
Confidence 888999999999999999999987 7999 886 4432 12244443 2344 999999999999
Q ss_pred EEEEEEEeCCceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEec-cCCCCCCCcccccchhhh
Q psy10160 197 EYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESC-TRAGQLPSYGPHIKRAVE 275 (558)
Q Consensus 197 ~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~-~~~g~~~~~~~w~~~~l~ 275 (558)
.|+|.| |..|.....+.|.|...+ |.... + ... .+..|....+.|... ...|.|.+.+.|++++..
T Consensus 420 ~Y~C~a-n~~g~~~~~~~l~V~~~~--p~~~~-~--~~~-------~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~ 486 (585)
T 2ocw_A 420 FYWCLT-NGDTLWRTTVEIKIIEGE--PNLKV-P--GNV-------TAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQ 486 (585)
T ss_pred EEEEcc-cCCCccceeEEEEEecCc--ccccc-C--Cce-------eEecCCcEEEEEEecCCCCCCccEEEEEeecCce
Confidence 999999 999999999999996532 22221 1 111 122333344444432 223788999999999866
Q ss_pred hhhhh-hh----hhh------cccccchhhhhhhHHHhhcc
Q psy10160 276 AEAAA-AD----KKR------RSRRSLSVVNKWSLRQAFTT 305 (558)
Q Consensus 276 ~~~~~-~~----~~~------~grth~q~a~~~t~g~~~~~ 305 (558)
..... .. ... .+...+..+.....|.|...
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 527 (585)
T 2ocw_A 487 ALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCG 527 (585)
T ss_pred eeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEE
Confidence 54322 10 111 13566777778888877764
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-19 Score=171.13 Aligned_cols=192 Identities=14% Similarity=0.113 Sum_probs=131.4
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEeCCCCccCCCCccccC-ceeEEecc-CCCCCCcEEEEeCCccc
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYG-TILSSAFP-SESASPVVTQTTTTTTE 89 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~~p~~~~~~~~~v~~~-~~~~~~~~-~~~p~p~v~W~~~~~~~ 89 (558)
.+++|.|.+++.+|+|.|+|.+.|..+.. ...+.|...+.........+.+| .+.+.|.. .+.|.|.+.|++++..+
T Consensus 46 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~s~-~~~l~v~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~ 124 (262)
T 3rjd_A 46 STPSYRITSASVNDSGEYRCQRGLSGRSD-PIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAF 124 (262)
T ss_dssp CSSEEEESSCCGGGCEEEEEEESSSCCCC-CEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEE
T ss_pred cCCeEEEecCCcccCeEEEEEEecCCccc-cEEEEEeccceEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccc
Confidence 45789999999999999999999876653 45566655443333333344444 56678887 67888999999988665
Q ss_pred CCCC-----------ceeeccccceeeceeEEeeccceeeEEeeeceee---eCcEEEecCCceEeeCCCcEEEEeEeec
Q psy10160 90 ATSP-----------HVYAALTHCVPWSNVCLFGARSGYLKETQNGGYL---VPVKVNITLETQVFGVGSDISIPCDVDG 155 (558)
Q Consensus 90 ~~~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~~~~~~~~~~v~~G~~v~L~C~~~g 155 (558)
.... ....|.|.|. +.+..+.......+.+. .+|.+...+ ...+.+|+.+.|.|.+.|
T Consensus 125 ~~~~~~~~l~i~~~~~~d~G~Y~C~-------~~n~~~~~~~~~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l~C~~~~ 196 (262)
T 3rjd_A 125 KFFHWNSNLTILKTNISHNGTYHCS-------GMGKHRYTSAGISVTVKELFPAPVLNASV-TSPLLEGNLVTLSCETKL 196 (262)
T ss_dssp EEEEECCCEEESSCCGGGCEEEEEE-------EESSSEEEEECEEEEEECSSCCCEEEESS-CSSEETTCCEEEEEECCC
T ss_pred cccCCCCeEEEEECChhhCEEEEEE-------EeCCCCccccceEEEeccCCCCCeEeecC-ceeecCCCeEEEEeEccc
Confidence 4321 1124455554 44444333333333333 345555555 556889999999999999
Q ss_pred cCC-Ce----EEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee---eEEEEEEEe
Q psy10160 156 YPI-PQ----VFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD---ENAVTIRVE 218 (558)
Q Consensus 156 ~P~-p~----i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~---~~~~~l~V~ 218 (558)
.|. |. +.|++++..+... ...++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus 197 ~p~~p~~~~~~~w~~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~s~~~~l~V~ 261 (262)
T 3rjd_A 197 LLQRPGLQLYFSFYMGSKTLRGR------NTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVL 261 (262)
T ss_dssp CCC-----EEEEEEETTEEEEEE------ESCCEEEESSCCGGGCEEEEEEEEETTSSCEEECCCEEECEE
T ss_pred CCCCCCccEEEEEEeCCcEeccc------CCCceEEEEEechhhCeEEEEEEEcccCceEEecCCeEEEEe
Confidence 987 64 6799999877532 245689999999999999999999999975 334555553
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.7e-19 Score=168.20 Aligned_cols=196 Identities=18% Similarity=0.168 Sum_probs=129.6
Q ss_pred eEecCCeEEEcCC---CCCCCEE--EEEEEEeCCcceE-EEEEEEEeCCCCc-cCCCCccccC-ceeEEeccCCCCCCcE
Q psy10160 9 YELNKNMLTIKRV---EPERLGA--YTCQAYNGLGRAV-SWTVTLQALPSEK-VADPNAIDYG-TILSSAFPSESASPVV 80 (558)
Q Consensus 9 ~~~~~~~L~I~~v---~~~D~G~--Y~C~a~n~~g~~~-s~~l~V~~~p~~~-~~~~~~v~~~-~~~~~~~~~~~p~p~v 80 (558)
+...++.|.|..+ +.+|+|. |+|.+.|..|... +..|.|...|... ......+.+| .+.+.|... |.|.+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~--p~~~i 128 (265)
T 2oz4_A 51 VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH--PRAKV 128 (265)
T ss_dssp EEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEECC--TTSEE
T ss_pred EeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcEEEEEEEEeCCCCceeecCCceecCCCcEEEEEEcc--CCCEE
Confidence 3345667888777 7888885 9999999988764 6677776654432 2233344555 555778776 99999
Q ss_pred EEEeCCcccCCCCcee----eccccceeeceeEEeeccc-eeeE---EeeeceeeeCcEEEec--CCceEeeCCCcEEEE
Q psy10160 81 TQTTTTTTEATSPHVY----AALTHCVPWSNVCLFGARS-GYLK---ETQNGGYLVPVKVNIT--LETQVFGVGSDISIP 150 (558)
Q Consensus 81 ~W~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~p~~~~~~--~~~~~v~~G~~v~L~ 150 (558)
+| ++..+....... ..........|.|.+.+.. +... ....+.+..+|.+... +....+.+|+.+.|.
T Consensus 129 ~W--~g~~~~~~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~ 206 (265)
T 2oz4_A 129 TL--NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPM 206 (265)
T ss_dssp EE--SSCSSSCCSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCC
T ss_pred EE--CCEEccCCCCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEE
Confidence 99 665553322111 0000000112445544322 2221 2333445566666544 446678999999999
Q ss_pred eEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEec
Q psy10160 151 CDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219 (558)
Q Consensus 151 C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 219 (558)
|.+.|+|.|.+.|+|++..+. .++.+. .++.+|+|.|+|.|.|..|..+..+.|.|..
T Consensus 207 C~~~g~P~p~i~W~~~~~~~~---------~~g~~~--~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 207 CQAWGNPLPELKCLKDGTFPL---------PIGESV--TVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp CCCEEESCCEEEEEETTTEEC---------CTTSCE--ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred eECccCCCCeEEEEECCcccC---------CCCcEE--EeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence 999999999999999987322 233343 4888999999999999999999999999964
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=173.32 Aligned_cols=204 Identities=14% Similarity=0.219 Sum_probs=128.0
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE------EEEEEEEeCCCCc-cCCC-CccccC-ceeEEeccCCCCCC--cE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV------SWTVTLQALPSEK-VADP-NAIDYG-TILSSAFPSESASP--VV 80 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~------s~~l~V~~~p~~~-~~~~-~~v~~~-~~~~~~~~~~~p~p--~v 80 (558)
.+.+|.|.+++.+|+|.|+|.+.|..+... ...|.|.+.|... +..+ ..+..| .+.+.|.+.+.|+| .+
T Consensus 72 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v 151 (327)
T 2wng_A 72 MDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITL 151 (327)
T ss_dssp CBCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEE
T ss_pred ceeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEE
Confidence 346899999999999999999999876421 3467776665432 2222 234444 56689998888776 89
Q ss_pred EEEeCCcccCCCCcee-----eccccc------------eeeceeEEeecccee---eEEee--eceeeeCcEEEecCCc
Q psy10160 81 TQTTTTTTEATSPHVY-----AALTHC------------VPWSNVCLFGARSGY---LKETQ--NGGYLVPVKVNITLET 138 (558)
Q Consensus 81 ~W~~~~~~~~~~~~~~-----~g~~~~------------~~~~~~~~~~~~~~~---~~~~~--~~~~~~p~~~~~~~~~ 138 (558)
.|++++..+....... .+.|.. ..-.+.|.+.+..+. ..... ...+..||.+...+..
T Consensus 152 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~ 231 (327)
T 2wng_A 152 KWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP 231 (327)
T ss_dssp EEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC
T ss_pred EEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC
Confidence 9999987776433110 011110 012456777665432 22222 2234567777765554
Q ss_pred eEeeCCCcEEEEeEeeccCCC--eEEEEECCEEeccCC-ceEEEccCC------eEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 139 QVFGVGSDISIPCDVDGYPIP--QVFWYKDGQVIENDG-VHYRITESN------RLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~P~p--~i~W~~~g~~l~~~~-~~~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
+.+|+.+.|.|.+.|.|+| .+.|+|+|..+.... ..+....++ .|.|.++..+|+|.|+|.|.|..|..
T Consensus 232 --~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~ 309 (327)
T 2wng_A 232 --VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPA 309 (327)
T ss_dssp --CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCC
T ss_pred --cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCC
Confidence 7899999999999996544 799999999876421 112222333 48899999999999999999999876
Q ss_pred -eEEEEEEE
Q psy10160 210 -ENAVTIRV 217 (558)
Q Consensus 210 -~~~~~l~V 217 (558)
+.++.+.+
T Consensus 310 ~s~~~~~~~ 318 (327)
T 2wng_A 310 VSKSHDLKV 318 (327)
T ss_dssp EEEEEECC-
T ss_pred chhheEEEe
Confidence 45554443
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-18 Score=184.36 Aligned_cols=205 Identities=15% Similarity=0.119 Sum_probs=136.4
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCCcce-----EEEEEEEEeCCCCccCCCC-ccc-cCceeEEeccCCCCCCcE----EEE
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGLGRA-----VSWTVTLQALPSEKVADPN-AID-YGTILSSAFPSESASPVV----TQT 83 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~g~~-----~s~~l~V~~~p~~~~~~~~-~v~-~~~~~~~~~~~~~p~p~v----~W~ 83 (558)
+|.|.+++.+|+|.|+|.|.|..+.. .+..|.|...|.....+.. .+. +..+.+.|...+.|.|.+ .|+
T Consensus 291 ~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~ 370 (585)
T 2ocw_A 291 SVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWE 370 (585)
T ss_pred EEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEE
Confidence 79999999999999999999964433 4556677666554433222 233 446678999999999988 788
Q ss_pred e--CCc--ccCC---------CCceeec---cccc--e---------eeceeEEeeccceeeEEeeeceeee-CcEEEec
Q psy10160 84 T--TTT--TEAT---------SPHVYAA---LTHC--V---------PWSNVCLFGARSGYLKETQNGGYLV-PVKVNIT 135 (558)
Q Consensus 84 ~--~~~--~~~~---------~~~~~~g---~~~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~ 135 (558)
+ ++. .+.. ..++... ..+. + .-.|.|.+ +..+.......+.+.. ||.+. .
T Consensus 371 ~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~-~ 448 (585)
T 2ocw_A 371 GAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLK-V 448 (585)
T ss_pred ccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCccccc-c
Confidence 8 665 2221 1111000 0000 1 11345555 4444333333444433 34443 3
Q ss_pred CCceEeeCCCcEEEEeEee----ccCCCeEEEEECCEEeccCCc-----eEE-EccC---CeEEEccCCCCCCeEEEEEE
Q psy10160 136 LETQVFGVGSDISIPCDVD----GYPIPQVFWYKDGQVIENDGV-----HYR-ITES---NRLHINQANATDSGEYRCVA 202 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~----g~P~p~i~W~~~g~~l~~~~~-----~~~-~~~~---~sL~I~~v~~~D~G~Y~C~a 202 (558)
+....+.+|+.+.|.|.+. |.|.|.+.|+|+|..+..... .+. ...+ ++|.|.+++.+|+|.|+|.|
T Consensus 449 ~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 528 (585)
T 2ocw_A 449 PGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGV 528 (585)
T ss_pred CCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEe
Confidence 6677889999999999997 778899999999987754321 122 2222 48999999999999999999
Q ss_pred EeCCceee-EEEEEEEeccC
Q psy10160 203 SNSYTSDE-NAVTIRVEGIF 221 (558)
Q Consensus 203 ~N~~G~~~-~~~~l~V~~~~ 221 (558)
.|..|... ..+.|.|.+++
T Consensus 529 ~N~~G~~~~~~~~l~V~~~p 548 (585)
T 2ocw_A 529 KQGHFYGETAAVYVAVEERK 548 (585)
T ss_pred EeCCCccEEEEEEEEEEeee
Confidence 99999776 44899998765
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-18 Score=185.28 Aligned_cols=251 Identities=18% Similarity=0.186 Sum_probs=148.9
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEE----EeCCCCccCCC-Cccc-cCceeEEeccCCC-CCC-cEEEEeC
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTL----QALPSEKVADP-NAID-YGTILSSAFPSES-ASP-VVTQTTT 85 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V----~~~p~~~~~~~-~~v~-~~~~~~~~~~~~~-p~p-~v~W~~~ 85 (558)
.|.|.+++.+|+|.|+|.|.|..|... +..+.+ ...|......+ ..+. +..+.+.|.+.+. |.| .++|+++
T Consensus 179 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~ 258 (523)
T 2rcj_C 179 YLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSG 258 (523)
T ss_pred EEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecC
Confidence 699999999999999999999887653 222211 11222221222 2233 4466788998886 878 7999999
Q ss_pred CcccCCCC--ce--eeccc---ccee--------eceeEEeeccceeeEEeeeceeeeCcEE-EecCCceE-eeCCCcEE
Q psy10160 86 TTTEATSP--HV--YAALT---HCVP--------WSNVCLFGARSGYLKETQNGGYLVPVKV-NITLETQV-FGVGSDIS 148 (558)
Q Consensus 86 ~~~~~~~~--~~--~~g~~---~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~-v~~G~~v~ 148 (558)
+..+.... .. ..+.| ..+. -.|.|.+.|..+.........+..+|.+ ...+.... +.+|+.+.
T Consensus 259 g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~dG~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~ 338 (523)
T 2rcj_C 259 ALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPE 338 (523)
T ss_pred CcccceEeCCcEecCCCcEEEEEEEEechhhcCCceEEEEEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCceE
Confidence 86543210 00 00100 0011 3456667766655433333333333443 33444343 78899999
Q ss_pred EEeEeeccCC----CeEEEEECCEEeccCCceE-EEccC------CeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 149 IPCDVDGYPI----PQVFWYKDGQVIENDGVHY-RITES------NRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 149 L~C~~~g~P~----p~i~W~~~g~~l~~~~~~~-~~~~~------~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
|.|.+.|.|+ |.|.|+|+|..+....... ....+ +.|.|.++..+|+|.|+|.|.|..+.......+.+
T Consensus 339 l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~ 418 (523)
T 2rcj_C 339 VTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISK 418 (523)
T ss_pred EEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEc
Confidence 9999999754 4899999999886543111 11122 25899999999999999999998877755544443
Q ss_pred e-ccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCC--cccccchhhhhh
Q psy10160 218 E-GIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPS--YGPHIKRAVEAE 277 (558)
Q Consensus 218 ~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~--~~~w~~~~l~~~ 277 (558)
. ....+|.+...+... . .+. + +. ....|.+.|.++| .+.|++++....
T Consensus 419 ~~~~~~~P~v~~~~~~~--~-~~~------~--~~-~~l~C~~~g~~p~~~~v~W~k~g~~~~ 469 (523)
T 2rcj_C 419 AKGQPREPQVYTLPPSR--E-EMT------K--NQ-VSLTCLVKGFYPSDIAVEWESNGQPEN 469 (523)
T ss_pred ccCCCCCCEEEEeCCCh--H-Hcc------C--Cc-eEEEEEEEeeECCCCEEEEEECCEECC
Confidence 1 122233322111100 0 000 1 22 4466777687776 889999976543
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-20 Score=210.40 Aligned_cols=198 Identities=19% Similarity=0.257 Sum_probs=0.0
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCCCccccC-ceeEEeccCCCCCCcEEEEeCCcccCC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPNAIDYG-TILSSAFPSESASPVVTQTTTTTTEAT 91 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~~~v~~~-~~~~~~~~~~~p~p~v~W~~~~~~~~~ 91 (558)
.+|.|.++ +|+|.|+|.|.|..|... +..+.|...|.....+...+.+| .+.+.|...+.|.|.+.|++++..+..
T Consensus 515 ~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~~~p~~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~ 592 (772)
T 3v2a_R 515 STLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLP 592 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeec--ccCeEEEEEEEccccccceeEEEEEECCceeeccCCcccccCCceEEEEeccCCCCCCcEEEEcCCcccc
Confidence 57888877 799999999999998764 55666665554443333334444 566899999999999999998754322
Q ss_pred CC---------------------------------------ceeeccccceeeceeEEeeccceeeE--Eeee--ceeee
Q psy10160 92 SP---------------------------------------HVYAALTHCVPWSNVCLFGARSGYLK--ETQN--GGYLV 128 (558)
Q Consensus 92 ~~---------------------------------------~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~ 128 (558)
.. ....|.|.|.+. |..+... .... .....
T Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~-------n~~~~~~~s~~~~l~v~~~~ 665 (772)
T 3v2a_R 593 IHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQ-------DRKTKKRHCVVRQLTVLERV 665 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEE-------eCCCCeEEEEEEeecccccC
Confidence 11 011455555544 4221111 1111 11246
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEc-cCCeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT-ESNRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
+|.+...+....+.+|+.+.|.|.+.|.|.|.|.|+|+|..+..+. ++.+. .+++|.|.++..+|+|.|+|.|.|..|
T Consensus 666 ~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 744 (772)
T 3v2a_R 666 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS-GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLG 744 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCC-CeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCc
Confidence 7778777778889999999999999999999999999999887654 33333 356899999999999999999999999
Q ss_pred eeeEEEEEEEeccC
Q psy10160 208 SDENAVTIRVEGIF 221 (558)
Q Consensus 208 ~~~~~~~l~V~~~~ 221 (558)
..+.++.|.|.+++
T Consensus 745 ~~~~~~~l~V~~~p 758 (772)
T 3v2a_R 745 CAKVEAFFIIEGAQ 758 (772)
T ss_dssp --------------
T ss_pred ceeEEEEEEEECCC
Confidence 99999999998765
|
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.7e-19 Score=161.46 Aligned_cols=121 Identities=17% Similarity=0.250 Sum_probs=90.5
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEEeCCcccCC
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQTTTTTTEAT 91 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~~~~~~~~~ 91 (558)
..+|.|.+++.+|+|.|+|.|.|..|... +..|.|..
T Consensus 68 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~------------------------------------------ 105 (203)
T 4fa8_A 68 TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVK------------------------------------------ 105 (203)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE------------------------------------------
T ss_pred EEEEEEccCCHHHCeEEEEEEEcCCCcEEEEEEEEecC------------------------------------------
Confidence 35799999999999999999999988763 34444432
Q ss_pred CCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEec
Q psy10160 92 SPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIE 171 (558)
Q Consensus 92 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~ 171 (558)
||.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.
T Consensus 106 -------------------------------------p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~ 148 (203)
T 4fa8_A 106 -------------------------------------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEP 148 (203)
T ss_dssp -------------------------------------EEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC-----
T ss_pred -------------------------------------CceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeec
Confidence 3334444455667899999999999999999999998776553
Q ss_pred c---CCceEEEccCCeEEE---ccCCCCCCeEEEEEEEeCCceeeEE
Q psy10160 172 N---DGVHYRITESNRLHI---NQANATDSGEYRCVASNSYTSDENA 212 (558)
Q Consensus 172 ~---~~~~~~~~~~~sL~I---~~v~~~D~G~Y~C~a~N~~G~~~~~ 212 (558)
. .+.++.+..+++|.| .+++.+|+|.|+|.|.|..|.....
T Consensus 149 ~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v 195 (203)
T 4fa8_A 149 APTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV 195 (203)
T ss_dssp -------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred CcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence 2 234667777776544 6899999999999999999998753
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.8e-18 Score=154.51 Aligned_cols=135 Identities=31% Similarity=0.524 Sum_probs=107.3
Q ss_pred CCceEe--cCCeEEEcCCCCCCCEEEEEEEEeCCcceEE--EEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEE
Q psy10160 6 SENYEL--NKNMLTIKRVEPERLGAYTCQAYNGLGRAVS--WTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVT 81 (558)
Q Consensus 6 ~~r~~~--~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s--~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~ 81 (558)
+.++.+ ++.+|.|.+++.+|+|.|+|.+.|..|...+ ..+.|..
T Consensus 52 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-------------------------------- 99 (192)
T 2iep_A 52 DTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM-------------------------------- 99 (192)
T ss_dssp CTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEEE--------------------------------
T ss_pred CccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEEe--------------------------------
Confidence 445554 4457999999999999999999998877433 3344332
Q ss_pred EEeCCcccCCCCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeE
Q psy10160 82 QTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQV 161 (558)
Q Consensus 82 W~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i 161 (558)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+
T Consensus 100 -----------------------------------------------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v 132 (192)
T 2iep_A 100 -----------------------------------------------KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSV 132 (192)
T ss_dssp -----------------------------------------------EEEEEECCCCEEEETTSCEEECCEEEEESCCEE
T ss_pred -----------------------------------------------CCccccCCcceEEeCCCcEEEEEEEeccCCceE
Confidence 233333445667889999999999999999999
Q ss_pred EEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee-eEEEEEEEecc
Q psy10160 162 FWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD-ENAVTIRVEGI 220 (558)
Q Consensus 162 ~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~ 220 (558)
.|++++..+.... ++....+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+
T Consensus 133 ~W~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~p 191 (192)
T 2iep_A 133 SWIKGDSALRENS-RIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF 191 (192)
T ss_dssp EEEETTEECCCCS-SEEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred EEEeCCEEccCCC-cEEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeC
Confidence 9999999887654 6666778899999999999999999999999988 45688888644
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-17 Score=158.11 Aligned_cols=199 Identities=18% Similarity=0.216 Sum_probs=141.1
Q ss_pred cCceeEEeccCCCCCCcEEEEeCCcccCCCCceeec---cccce---------eeceeEEeeccceeeEEeeeceeeeCc
Q psy10160 63 YGTILSSAFPSESASPVVTQTTTTTTEATSPHVYAA---LTHCV---------PWSNVCLFGARSGYLKETQNGGYLVPV 130 (558)
Q Consensus 63 ~~~~~~~~~~~~~p~p~v~W~~~~~~~~~~~~~~~g---~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p~ 130 (558)
+..+.+.|...+.|.|.+.|++++..+....+.... ....+ .-.|.|.+.+..+.......+.+..+|
T Consensus 20 G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p 99 (284)
T 2rik_A 20 GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP 99 (284)
T ss_dssp TCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred CCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCceEEEEEEEEccCCC
Confidence 346678999989999999999998877665443211 00111 124567777766665555666666777
Q ss_pred EEEecCC-ceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEE---ccCCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 131 KVNITLE-TQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI---TESNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 131 ~~~~~~~-~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~---~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
.+...+. ...+.+|+.+.|.|.+.|.|.|.+.|++++..+.... ++.. .....|.|.+++.+|+|.|+|.+.|..
T Consensus 100 ~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 178 (284)
T 2rik_A 100 RFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESS-KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 178 (284)
T ss_dssp EEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSS-SEEEEEETTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred cccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCC-cEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCC
Confidence 7665544 4568899999999999999999999999999887654 3322 223579999999999999999999999
Q ss_pred ceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhh
Q psy10160 207 TSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAE 277 (558)
Q Consensus 207 G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~ 277 (558)
|.....+.|.|..++ .+...+. ...+ .. +......|.+.|.|++.+.|++++....
T Consensus 179 g~~~~~~~l~V~~~p---~~~~~~~---~~~~------~~---g~~v~l~C~~~g~p~~~v~W~~~~~~~~ 234 (284)
T 2rik_A 179 GSASSSTSLKVKEPP---VFRKKPH---PVET------LK---GADVHLECELQGTPPFQVSWHKDKRELR 234 (284)
T ss_dssp CEEEEEEEEEEECCC---BCCSCCC---CEEE------CT---TCCEEEEEECBSSSCCEEEEEETTEEEC
T ss_pred CceeEEEEEEEecCC---cceeCCC---ccee------cC---CCeEEEEEEEEecCCCEEEEEECCEECc
Confidence 999999999997543 3322221 1111 22 3334456667799999999999976544
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=180.35 Aligned_cols=259 Identities=16% Similarity=0.172 Sum_probs=149.9
Q ss_pred CCceEec------CCeEEEcCCCCCCCEEEEEEEEeCCcce--E--EEEEEEEe----CCCCccCCC-Ccc-ccCceeEE
Q psy10160 6 SENYELN------KNMLTIKRVEPERLGAYTCQAYNGLGRA--V--SWTVTLQA----LPSEKVADP-NAI-DYGTILSS 69 (558)
Q Consensus 6 ~~r~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~g~~--~--s~~l~V~~----~p~~~~~~~-~~v-~~~~~~~~ 69 (558)
.+|+.+. +.+|.|.+++.+|+|.|+|.+.|..+.. . ...+.|.. .|......+ ..+ .+..+.+.
T Consensus 65 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~ 144 (444)
T 1igt_B 65 KGRFTISRDNAKNTLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLG 144 (444)
T ss_dssp TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEE
Confidence 4577652 3589999999999999999999976542 1 23455542 122222222 223 34466788
Q ss_pred eccCCC-CCC-cEEEEeCCcccCC--CCce-eeccccc---ee--------eceeEEeeccceeeEEeeec---------
Q psy10160 70 AFPSES-ASP-VVTQTTTTTTEAT--SPHV-YAALTHC---VP--------WSNVCLFGARSGYLKETQNG--------- 124 (558)
Q Consensus 70 ~~~~~~-p~p-~v~W~~~~~~~~~--~~~~-~~g~~~~---~~--------~~~~~~~~~~~~~~~~~~~~--------- 124 (558)
|.+.+. |.| .+.|++++..... .... ..+.|.. +. -.+.|.+.+..+........
T Consensus 145 C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~dg~Y~C~a~n~~~~~~~~~~i~~~~~~~~~ 224 (444)
T 1igt_B 145 CLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIKP 224 (444)
T ss_dssp EEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTTSCCEEEEEETTTTEEEEEECCCCCCSCCC
T ss_pred EEEcceeCCCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCCCeEEEEEEeCCCCcceEEEeccCCCCccc
Confidence 988775 777 9999998765311 0000 0011111 00 24567666665543222211
Q ss_pred ---------eeeeCcEE-EecCCceE-eeCCCcEEEEeEeeccC----CCeEEEEECCEEeccCCce-EEEc------cC
Q psy10160 125 ---------GYLVPVKV-NITLETQV-FGVGSDISIPCDVDGYP----IPQVFWYKDGQVIENDGVH-YRIT------ES 182 (558)
Q Consensus 125 ---------~~~~p~~~-~~~~~~~~-v~~G~~v~L~C~~~g~P----~p~i~W~~~g~~l~~~~~~-~~~~------~~ 182 (558)
....+|.+ ..++.... +.+|+.+.|.|.+.|.| .+.+.|+|++..+...... .... ..
T Consensus 225 ~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~ 304 (444)
T 1igt_B 225 CPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVV 304 (444)
T ss_dssp CCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEE
T ss_pred CCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEE
Confidence 11224554 33333333 58899999999999984 3589999999887543211 1111 12
Q ss_pred CeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE-eccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCC
Q psy10160 183 NRLHINQANATDSGEYRCVASNSYTSDENAVTIRV-EGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAG 261 (558)
Q Consensus 183 ~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g 261 (558)
++|.|.+++.+|+|.|+|.|.|..|.......+.+ .....+|.+...+... .....+. ..+.|.+.|
T Consensus 305 ~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~-----------~~~~~~~-~~L~C~~~g 372 (444)
T 1igt_B 305 SALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPE-----------EEMTKKQ-VTLTCMVTD 372 (444)
T ss_dssp EEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCG-----------GGTTSSE-EEEEEEEEE
T ss_pred EEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCCh-----------HHccCCe-EEEEEEEEe
Confidence 47999999999999999999999987743333322 1122233322111000 0001122 446666667
Q ss_pred C-CCC-cccccchhhhh
Q psy10160 262 Q-LPS-YGPHIKRAVEA 276 (558)
Q Consensus 262 ~-~~~-~~~w~~~~l~~ 276 (558)
. |++ .+.|++++...
T Consensus 373 ~~P~~~~v~W~k~g~~l 389 (444)
T 1igt_B 373 FMPEDIYVEWTNNGKTE 389 (444)
T ss_dssp EBSSCCEEEEEETTEEC
T ss_pred eeCCCCEEEEEECCEEc
Confidence 4 555 78999997654
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-17 Score=153.30 Aligned_cols=137 Identities=26% Similarity=0.454 Sum_probs=107.0
Q ss_pred CeEEEcCCCC-CCCEEEEEEEEeCCcceE--EEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEEeCCcccC
Q psy10160 14 NMLTIKRVEP-ERLGAYTCQAYNGLGRAV--SWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQTTTTTTEA 90 (558)
Q Consensus 14 ~~L~I~~v~~-~D~G~Y~C~a~n~~g~~~--s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~~~~~~~~ 90 (558)
.+|.|.+++. +|+|.|+|.+.|..|... +..|.|...+....
T Consensus 64 ~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~----------------------------------- 108 (212)
T 2yd1_A 64 SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPA----------------------------------- 108 (212)
T ss_dssp EEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCT-----------------------------------
T ss_pred EEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCC-----------------------------------
Confidence 4899999999 999999999999998743 44555543321100
Q ss_pred CCCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEe
Q psy10160 91 TSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVI 170 (558)
Q Consensus 91 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l 170 (558)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+
T Consensus 109 -------------------------------------~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~ 151 (212)
T 2yd1_A 109 -------------------------------------GFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKV 151 (212)
T ss_dssp -------------------------------------TCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEEC
T ss_pred -------------------------------------CCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEc
Confidence 1244445556677889999999999999999999999999998
Q ss_pred ccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEE-EEEEEeccCCC
Q psy10160 171 ENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENA-VTIRVEGIFIH 223 (558)
Q Consensus 171 ~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~-~~l~V~~~~~~ 223 (558)
.....++.. .+++|.|.+++.+|+|.|+|.|.|..|..... +.|.|.+....
T Consensus 152 ~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~~ 204 (212)
T 2yd1_A 152 DMSNPRYSL-KDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVG 204 (212)
T ss_dssp CTTSTTEEE-ETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---C
T ss_pred ccCCCeEEc-cCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecccc
Confidence 875555544 45799999999999999999999999999754 89999866533
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-17 Score=151.08 Aligned_cols=128 Identities=29% Similarity=0.445 Sum_probs=104.0
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEEeCCcccCCC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQTTTTTTEATS 92 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~~~~~~~~~~ 92 (558)
.+|.|.+++.+|+|.|+|.+.|..|... +..+.|...+
T Consensus 63 ~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~~----------------------------------------- 101 (194)
T 2a38_A 63 AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAET----------------------------------------- 101 (194)
T ss_dssp EEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC-----------------------------------------
T ss_pred EEEEECCCCcccCEEEEEEEEcCCceEeEEEEEEEccCC-----------------------------------------
Confidence 4899999999999999999999888653 3444443210
Q ss_pred CceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEecc
Q psy10160 93 PHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN 172 (558)
Q Consensus 93 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~ 172 (558)
.||.+...+....+.+|+.+.|.|.+.|+|.|.+.|++++..+..
T Consensus 102 -----------------------------------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~ 146 (194)
T 2a38_A 102 -----------------------------------APPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQS 146 (194)
T ss_dssp -----------------------------------EEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCC
T ss_pred -----------------------------------CCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCC
Confidence 244445556667788999999999999999999999999999876
Q ss_pred CCceEEEccCC---eEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEe
Q psy10160 173 DGVHYRITESN---RLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218 (558)
Q Consensus 173 ~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 218 (558)
.. ++.+..++ +|.|.+++.+|+|.|+|.|.|..|.....+.|.|+
T Consensus 147 ~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 194 (194)
T 2a38_A 147 SL-DFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194 (194)
T ss_dssp SS-SEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CC-cEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence 54 45444433 79999999999999999999999999999988873
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-17 Score=149.46 Aligned_cols=128 Identities=26% Similarity=0.381 Sum_probs=102.1
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEEeCCcccCCC
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQTTTTTTEATS 92 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~~~~~~~~~~ 92 (558)
+++|.|.+++.+|+|.|+|.+.|..|...+..+.|.+.
T Consensus 61 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~------------------------------------------ 98 (191)
T 1epf_A 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF------------------------------------------ 98 (191)
T ss_dssp EEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEE------------------------------------------
T ss_pred ceEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEEee------------------------------------------
Confidence 46899999999999999999999886544555555442
Q ss_pred CceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEecc
Q psy10160 93 PHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN 172 (558)
Q Consensus 93 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~ 172 (558)
.+|.+...+....+.+|+.+.|.|.+.|+|.|.+.|++++..+..
T Consensus 99 -----------------------------------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~ 143 (191)
T 1epf_A 99 -----------------------------------QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVIL 143 (191)
T ss_dssp -----------------------------------CCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGG
T ss_pred -----------------------------------cCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeec
Confidence 133334445566788999999999999999999999999998864
Q ss_pred C-CceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 173 D-GVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 173 ~-~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
. +.++....+++|.|.+++.+|+|.|+|.|.|..|.......+.|
T Consensus 144 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v 189 (191)
T 1epf_A 144 KKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189 (191)
T ss_dssp GCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred cCCceEEEecCCeEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence 3 34677777889999999999999999999999876655555444
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-17 Score=147.43 Aligned_cols=79 Identities=25% Similarity=0.595 Sum_probs=68.7
Q ss_pred eEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEc-cCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT-ESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
..+.+|+.+.|.|.+.|.|.|.+.|+++|..+.... ++... .+++|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 108 ~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 186 (189)
T 2v5t_A 108 ATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE-KYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186 (189)
T ss_dssp EETTSCCCEEEECEEEEESCCEEEEEETTEECCCSS-SEEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred ccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCC-cEEEecCCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEE
Confidence 456789999999999999999999999999987655 44433 4568999999999999999999999999998888887
Q ss_pred e
Q psy10160 218 E 218 (558)
Q Consensus 218 ~ 218 (558)
.
T Consensus 187 ~ 187 (189)
T 2v5t_A 187 F 187 (189)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.2e-18 Score=165.52 Aligned_cols=202 Identities=17% Similarity=0.221 Sum_probs=128.9
Q ss_pred cCceeEEeccCCCCCCcEEEEeCCcccCCCCcee----ecc---------cc-ceeeceeEEeeccceeeEEeeeceeee
Q psy10160 63 YGTILSSAFPSESASPVVTQTTTTTTEATSPHVY----AAL---------TH-CVPWSNVCLFGARSGYLKETQNGGYLV 128 (558)
Q Consensus 63 ~~~~~~~~~~~~~p~p~v~W~~~~~~~~~~~~~~----~g~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (558)
+..+.+.|...+.|.|.+.|++++..+....... .+. .. ...-.|.|.+.+..+.......+.+..
T Consensus 21 G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 100 (304)
T 2yd9_A 21 GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLR 100 (304)
T ss_dssp TSCEEEEEEEECSSCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCEEEEEEEC
T ss_pred CCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCeEEEEEEEEEec
Confidence 3466789999999999999999987664332110 000 00 112234566666555433333333333
Q ss_pred C-------cEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCC--ceEEEccCCeEEEccCCCCCCeEEE
Q psy10160 129 P-------VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG--VHYRITESNRLHINQANATDSGEYR 199 (558)
Q Consensus 129 p-------~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~--~~~~~~~~~sL~I~~v~~~D~G~Y~ 199 (558)
+ |.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.... .++....+++|.|.+++.+|+|.|+
T Consensus 101 ~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 180 (304)
T 2yd9_A 101 EDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYE 180 (304)
T ss_dssp GGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEE
T ss_pred cccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEE
Confidence 2 677777888889999999999999999999999999999886542 2455566779999999999999999
Q ss_pred EEEEeCCceeeEE-EEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhh
Q psy10160 200 CVASNSYTSDENA-VTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA 276 (558)
Q Consensus 200 C~a~N~~G~~~~~-~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~ 276 (558)
|.|.|..|..... ..+.|.....+|.+...+. ...+..| ......|.+.|.|+|.+.|++++...
T Consensus 181 C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~---------~~~v~~G---~~v~l~C~~~g~p~p~v~W~~~~~~l 246 (304)
T 2yd9_A 181 CVATNSAGVRYSSPANLYVRVQNVAPRFSILPM---------SHEIMPG---GNVNITCVAVGSPMPYVKWMQGAEDL 246 (304)
T ss_dssp EEEEETTEEEECCCEEEEEECCCEEEEEEECCC---------CBCCCTT---CCEEEEEEEEEESCCEEEEEETTEEC
T ss_pred EEEEeCCCCEEeccEEEEEEeeccCCcEEecCC---------ceEEcCC---CeEEEEEEEeeeCCCEEEEEECCEEC
Confidence 9999999987532 4555543222233221111 0112223 33335555668999999999997554
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=152.52 Aligned_cols=129 Identities=23% Similarity=0.331 Sum_probs=101.0
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEEeCCcccCCCC
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQTTTTTTEATSP 93 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~~~~~~~~~~~ 93 (558)
+|.|.+++.+|+|.|+|.+.|..|... +..+.|..+|...
T Consensus 63 ~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~--------------------------------------- 103 (197)
T 2j8h_A 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIH--------------------------------------- 103 (197)
T ss_dssp EEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEEEEEEC---------------------------------------
T ss_pred EEEECcCCHHhCEEEEEEEEECCCceeEEEEEEEcCCCcCC---------------------------------------
Confidence 999999999999999999999988753 4555555432210
Q ss_pred ceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccC
Q psy10160 94 HVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEND 173 (558)
Q Consensus 94 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~ 173 (558)
.+.+...+....+.+|+.+.|.|.+.|+|.|.+.|++++..+...
T Consensus 104 -----------------------------------~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~ 148 (197)
T 2j8h_A 104 -----------------------------------LPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN 148 (197)
T ss_dssp -----------------------------------CSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSS
T ss_pred -----------------------------------CCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecC
Confidence 011111223456788999999999999999999999999988754
Q ss_pred CceEEEc---cCCeEEEcc-CCCCCCeEEEEEEEeCCceeeEEEEEEEe
Q psy10160 174 GVHYRIT---ESNRLHINQ-ANATDSGEYRCVASNSYTSDENAVTIRVE 218 (558)
Q Consensus 174 ~~~~~~~---~~~sL~I~~-v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 218 (558)
. ++.+. .+++|.|.+ ++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 149 ~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 149 G-HYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp S-SCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred C-CEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence 4 44443 235899999 99999999999999999999999999885
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-17 Score=170.18 Aligned_cols=258 Identities=15% Similarity=0.122 Sum_probs=148.0
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCCC--ccccC-ceeEEeccCCCCCC---cEEEEeCC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPN--AIDYG-TILSSAFPSESASP---VVTQTTTT 86 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~~--~v~~~-~~~~~~~~~~~p~p---~v~W~~~~ 86 (558)
.+|.|.+++. |+| |+|.+.|..+... +..|.|..+|......+. .+.+| .+.+.|...+.|+| .++|++++
T Consensus 50 ~~l~i~~v~~-d~g-Y~C~a~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g 127 (450)
T 1z7z_I 50 KVYELSNVQE-DSQ-PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGE 127 (450)
T ss_dssp EEEEEEEECS-CBC-CEEEEEETTEEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETT
T ss_pred eEEEEEeccc-CCe-eEEEEeCCCCcceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCC
Confidence 4899999987 999 9999987655443 567777777766544433 34444 56689999999888 89999998
Q ss_pred cccCCCCce----------------eeccccceeeceeEEeeccceeeEEe--eecee----eeCcEEEecCCceEeeCC
Q psy10160 87 TTEATSPHV----------------YAALTHCVPWSNVCLFGARSGYLKET--QNGGY----LVPVKVNITLETQVFGVG 144 (558)
Q Consensus 87 ~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~p~~~~~~~~~~~v~~G 144 (558)
..+...... ..|.|.|.+.+........ ...... ....+ ..+|.+.. ...+.+|
T Consensus 128 ~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~~~~s~~~~l~v~~~~~~~p~~~~---~~~v~~G 203 (450)
T 1z7z_I 128 KELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLE-LFENTSAPYQLQTFVLPATPPQLVS---PRVLEVD 203 (450)
T ss_dssp EEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSC-EEEEECCCEECEECCCCSSCCEEEC---CSEEETT
T ss_pred EEeecccccccccceEEEEEeeccccCceEEEEEEcccCCCCce-EEeeccCccceeeeccCCCCCEecC---ceeEEeC
Confidence 766433211 1445555544332111000 000000 01111 12233322 1578899
Q ss_pred CcEEEEeEeecc-C--CCeEEEEECCEEeccCCceEEEccCCeEEEc---cCCCCCCe--EEEEEEEeCCceeeEEEEEE
Q psy10160 145 SDISIPCDVDGY-P--IPQVFWYKDGQVIENDGVHYRITESNRLHIN---QANATDSG--EYRCVASNSYTSDENAVTIR 216 (558)
Q Consensus 145 ~~v~L~C~~~g~-P--~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~---~v~~~D~G--~Y~C~a~N~~G~~~~~~~l~ 216 (558)
+.+.|.|.+.|. | .|.+.|++++..+.. ++....++ +.+. +++.+|+| .|+|.|.|..|.....+.|.
T Consensus 204 ~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~---~~~~~~~~-~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~ 279 (450)
T 1z7z_I 204 TQGTVVCSLDGLFPVSEAQVHLALGDQRLNP---TVTYGNDS-FSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVT 279 (450)
T ss_dssp SEEEEEEEEESCTTGGGCEEEEEETTEECCC---EEEEETTE-EEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CcEEEEEEeeCCCCCCceEEEEeCCCEeCCc---eEEecCCc-eeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEE
Confidence 999999999999 7 789999999998765 23322322 2222 78999999 99999999999999899999
Q ss_pred EeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhhhhhhcccccchhhhh
Q psy10160 217 VEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAADKKRRSRRSLSVVNK 296 (558)
Q Consensus 217 V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~~~~~~grth~q~a~~ 296 (558)
|...+. |.+. .....+.. +......|.+. |.|.+.| ++....... .....++..+..
T Consensus 280 V~~~~~-p~i~-----------~~~~~v~~---G~~v~l~C~~~--p~p~i~W--~g~~~~~~~----~~~~L~i~~~~~ 336 (450)
T 1z7z_I 280 IYSFPA-PNVI-----------LTKPEVSE---GTEVTVKCEAH--PRAKVTL--NGVPAQPLG----PRAQLLLKATPE 336 (450)
T ss_dssp EECCCC-CEEE-----------ESCSEEET---TCEEEEEEEC--------------------C----CCCCEEEECCGG
T ss_pred EecCCC-CeEe-----------cCCeeEeC---CCcEEEEEecC--CCCEeEE--CCEEcCCCC----ceEEEEEecCcc
Confidence 976432 2221 11112222 33444566663 8999999 543331111 112344555555
Q ss_pred hhHHHhhc
Q psy10160 297 WSLRQAFT 304 (558)
Q Consensus 297 ~t~g~~~~ 304 (558)
...|.|..
T Consensus 337 ~d~G~Y~C 344 (450)
T 1z7z_I 337 DNGRSFSC 344 (450)
T ss_dssp GTTCEEEE
T ss_pred cCCceEEE
Confidence 55665544
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-18 Score=168.82 Aligned_cols=204 Identities=13% Similarity=0.172 Sum_probs=116.0
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcc----e--EEEEEEEEeCC--C-CccCCCCccccC-ceeEEeccCCCCCCcEE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGR----A--VSWTVTLQALP--S-EKVADPNAIDYG-TILSSAFPSESASPVVT 81 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~----~--~s~~l~V~~~p--~-~~~~~~~~v~~~-~~~~~~~~~~~p~p~v~ 81 (558)
.+++|.|.+++.+|+|.|+|.|.|..+. . ....+.|...+ + ....+...+..| .+.+.|.. ..+++.+.
T Consensus 72 ~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~ 150 (316)
T 3vh8_G 72 FQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWS-DIMFEHFF 150 (316)
T ss_dssp BSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEE-SSCCSEEE
T ss_pred ceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcC-CCCCcEEE
Confidence 4679999999999999999999864321 1 13455555432 1 112222234445 55678877 45678899
Q ss_pred EEeCCcccCCCCc--------------------eeeccccceeeceeEEe--eccceeeEEeeeceeeeCcEEEecCCce
Q psy10160 82 QTTTTTTEATSPH--------------------VYAALTHCVPWSNVCLF--GARSGYLKETQNGGYLVPVKVNITLETQ 139 (558)
Q Consensus 82 W~~~~~~~~~~~~--------------------~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 139 (558)
|++++..+..... ...|.|.|.+.+..... ......+...... ...+|.+...+..
T Consensus 151 w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~-~~~~p~i~~~~~~- 228 (316)
T 3vh8_G 151 LHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTG-PYEKPSLSAQPGP- 228 (316)
T ss_dssp EEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEEC-SSCCCEEEEESCS-
T ss_pred EEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecC-CCCCCeEEeCCCC-
Confidence 9999876643211 01344444443322110 0001111221111 1134555555543
Q ss_pred EeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEcc---CCeEEEccCCCCCCeEEEEEEEeCCce-----eeE
Q psy10160 140 VFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE---SNRLHINQANATDSGEYRCVASNSYTS-----DEN 211 (558)
Q Consensus 140 ~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~---~~sL~I~~v~~~D~G~Y~C~a~N~~G~-----~~~ 211 (558)
.+.+|+.++|.|.+.+ |.+.+.|+|+|..+........... .++|.|.+++ |+|.|+|.|.|..+. .+.
T Consensus 229 ~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~ 305 (316)
T 3vh8_G 229 KVQAGESVTLSCSSRS-SYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSD 305 (316)
T ss_dssp CCCTTSCCEEEEEESS-CCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCC
T ss_pred eecCCCcEEEEEECCC-CCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCC
Confidence 5789999999999984 7889999999977653221111111 1479999999 999999999997763 356
Q ss_pred EEEEEEeccC
Q psy10160 212 AVTIRVEGIF 221 (558)
Q Consensus 212 ~~~l~V~~~~ 221 (558)
.+.|.|.++|
T Consensus 306 ~~~l~V~g~p 315 (316)
T 3vh8_G 306 PLLVSVTGNP 315 (316)
T ss_dssp CEEC------
T ss_pred cEEEEEeCCC
Confidence 6777776543
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-17 Score=150.72 Aligned_cols=138 Identities=17% Similarity=0.250 Sum_probs=100.5
Q ss_pred CCceEe-cCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEEe
Q psy10160 6 SENYEL-NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQTT 84 (558)
Q Consensus 6 ~~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~~ 84 (558)
.+|+.+ .+++|.|.+++.+|+|.|+|.+.|..+...+..+.|.+....
T Consensus 62 ~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~------------------------------- 110 (208)
T 3r4d_A 62 SGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPV------------------------------- 110 (208)
T ss_dssp CSSEEECTTSCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCC-------------------------------
T ss_pred cceeEEecCCeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCC-------------------------------
Confidence 345553 457999999999999999999999865444444444332110
Q ss_pred CCcccCCCCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEE
Q psy10160 85 TTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWY 164 (558)
Q Consensus 85 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~ 164 (558)
..|.+...... +.+|+.+.|.|.+.+.| |.+.|+
T Consensus 111 -------------------------------------------~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~ 144 (208)
T 3r4d_A 111 -------------------------------------------TQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWL 144 (208)
T ss_dssp -------------------------------------------CCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEE
T ss_pred -------------------------------------------CCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEE
Confidence 01222222223 77899999999999976 899999
Q ss_pred ECCEEeccCCceEEEcc-CCeEEEccCCCCCCeEEEEEEEeCCceee-EEEEEEEeccC
Q psy10160 165 KDGQVIENDGVHYRITE-SNRLHINQANATDSGEYRCVASNSYTSDE-NAVTIRVEGIF 221 (558)
Q Consensus 165 ~~g~~l~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~~~~ 221 (558)
+++..+..+. ++.+.. +++|.|.+++.+|+|.|+|.|.|..|... ..++|.|..++
T Consensus 145 ~~g~~l~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~ 202 (208)
T 3r4d_A 145 FNSQSLQLTE-RMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 202 (208)
T ss_dssp ETTEECCCCS-SEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC---
T ss_pred ECCEeCCCCC-CeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCC
Confidence 9999987654 454444 47899999999999999999999999874 66788886554
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=99.74 E-value=8.5e-18 Score=155.47 Aligned_cols=135 Identities=19% Similarity=0.304 Sum_probs=100.1
Q ss_pred CCceEec-------CCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCCCccccCceeEEeccCCCCC
Q psy10160 6 SENYELN-------KNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPNAIDYGTILSSAFPSESAS 77 (558)
Q Consensus 6 ~~r~~~~-------~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~ 77 (558)
.+|+.+. +.+|.|.+++.+|+|.|+|.+.|..|... +..|.|.+.|....
T Consensus 69 ~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~---------------------- 126 (214)
T 3jz7_A 69 KGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTR---------------------- 126 (214)
T ss_dssp TTTEEESCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCE----------------------
T ss_pred ccceEEeccCccCCcccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCce----------------------
Confidence 4566653 47899999999999999999999887653 45555554432210
Q ss_pred CcEEEEeCCcccCCCCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEe-ecc
Q psy10160 78 PVVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDV-DGY 156 (558)
Q Consensus 78 p~v~W~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~-~g~ 156 (558)
.+....+.+|+.+.|.|.+ .|.
T Consensus 127 ---------------------------------------------------------~~~~~~~~~g~~v~l~C~~~~g~ 149 (214)
T 3jz7_A 127 ---------------------------------------------------------CFVDGSEEIGNDFKLKCEPKEGS 149 (214)
T ss_dssp ---------------------------------------------------------EEEESCCBTTCCEEEEEECSBCC
T ss_pred ---------------------------------------------------------eeeecceecCCcEEEEecCCCCC
Confidence 0011125689999999999 899
Q ss_pred CCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEec
Q psy10160 157 PIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219 (558)
Q Consensus 157 P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 219 (558)
|.|.+.|++++..............+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus 150 p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 212 (214)
T 3jz7_A 150 LPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212 (214)
T ss_dssp SSCEEEEEECSTTCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBC
T ss_pred CCCEEEEEECCCCCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeC
Confidence 999999999543222221122223456999999999999999999999999999999999863
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-17 Score=154.53 Aligned_cols=141 Identities=26% Similarity=0.416 Sum_probs=102.5
Q ss_pred ecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEEeCCccc
Q psy10160 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQTTTTTTE 89 (558)
Q Consensus 11 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~~~~~~~ 89 (558)
..+++|.|.+++.+|+|.|+|.+.|..|... +..+.|...+..
T Consensus 69 ~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~------------------------------------ 112 (241)
T 3grw_A 69 HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPH------------------------------------ 112 (241)
T ss_dssp GGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCC------------------------------------
T ss_pred ccceEEEEEeCCcccCEEEEEEEeecCCceEEEEEEEEeccCCC------------------------------------
Confidence 3556899999999999999999999887653 445555432111
Q ss_pred CCCCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEE----
Q psy10160 90 ATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYK---- 165 (558)
Q Consensus 90 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~---- 165 (558)
.|..+...+....+.+|+.+.|.|.+.|.|.|.+.|++
T Consensus 113 --------------------------------------~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~ 154 (241)
T 3grw_A 113 --------------------------------------RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEV 154 (241)
T ss_dssp --------------------------------------CCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCS
T ss_pred --------------------------------------CceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccC
Confidence 12222234456677899999999999999999999999
Q ss_pred CCEEeccCCceEEE----------ccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccCCCCC
Q psy10160 166 DGQVIENDGVHYRI----------TESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225 (558)
Q Consensus 166 ~g~~l~~~~~~~~~----------~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~ 225 (558)
++..+..++..+.. ..+++|.|.+++.+|+|.|+|.|.|..|....++.|.|.+++.+|.
T Consensus 155 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~ 224 (241)
T 3grw_A 155 NGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEE 224 (241)
T ss_dssp SSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC--------
T ss_pred CCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCCc
Confidence 88777654432211 1234799999999999999999999999999999999987764443
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=171.90 Aligned_cols=259 Identities=14% Similarity=0.116 Sum_probs=142.6
Q ss_pred CCceEec------CCeEEEcCCCCCCCEEEEEEEEeCCcc-----e--EEEEEEEEeC----CCCccCCCCcccc-Ccee
Q psy10160 6 SENYELN------KNMLTIKRVEPERLGAYTCQAYNGLGR-----A--VSWTVTLQAL----PSEKVADPNAIDY-GTIL 67 (558)
Q Consensus 6 ~~r~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~g~-----~--~s~~l~V~~~----p~~~~~~~~~v~~-~~~~ 67 (558)
.+|+.+. +.+|.|.+++.+|+|.|+|.+.|..|. . ....|.|... |......+..+.. +.+.
T Consensus 66 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~g~~v~ 145 (475)
T 1iga_A 66 RGRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVV 145 (475)
T ss_pred CCceEEEEcCCCCeEEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCccccCCCCeEE
Confidence 4566642 248999999999999999999997652 1 2345555531 2222222222333 4667
Q ss_pred EEeccCCC-CC-C-cEEEEeCCcccCCC--Cce---eeccccc------------eeeceeEEeeccceee-EEeeecee
Q psy10160 68 SSAFPSES-AS-P-VVTQTTTTTTEATS--PHV---YAALTHC------------VPWSNVCLFGARSGYL-KETQNGGY 126 (558)
Q Consensus 68 ~~~~~~~~-p~-p-~v~W~~~~~~~~~~--~~~---~~g~~~~------------~~~~~~~~~~~~~~~~-~~~~~~~~ 126 (558)
+.|.+.+. |. | .|.|++++...... ... ..+.|.. ..-.+.|.+.+..+.. .......+
T Consensus 146 L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V 225 (475)
T 1iga_A 146 IACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPV 225 (475)
T ss_pred EEEEEeeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEeccc
Confidence 88988886 65 5 89999877432110 000 0011100 0123455555543211 00000000
Q ss_pred ------------------eeCcEE-EecCCceEeeCCCcEEEEeEeeccCC---CeEEEEECCEEeccCC-ceEEE----
Q psy10160 127 ------------------LVPVKV-NITLETQVFGVGSDISIPCDVDGYPI---PQVFWYKDGQVIENDG-VHYRI---- 179 (558)
Q Consensus 127 ------------------~~p~~~-~~~~~~~~v~~G~~v~L~C~~~g~P~---p~i~W~~~g~~l~~~~-~~~~~---- 179 (558)
..+|.+ ...+....+.+|+.+.|.|.+.|.|+ +.|.| ++..+.... .....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g 303 (475)
T 1iga_A 226 PSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCG 303 (475)
T ss_pred ccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCC
Confidence 024444 33333444689999999999999754 68999 443332211 00000
Q ss_pred --ccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEec
Q psy10160 180 --TESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESC 257 (558)
Q Consensus 180 --~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~ 257 (558)
...++|.|.+++.+|+|.|+|.|.|..|.......|.+.....+|.+...+... . .+.. +......|
T Consensus 304 ~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~--~------~v~~---g~~~~L~C 372 (475)
T 1iga_A 304 CYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPS--E------ELAL---NELVTLTC 372 (475)
T ss_pred CEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCCh--H------Hhcc---CCceEEEE
Confidence 123469999999999999999999999986554455432223333332111100 0 0111 33334556
Q ss_pred cCCCCCC--Ccccccchhhhhh
Q psy10160 258 TRAGQLP--SYGPHIKRAVEAE 277 (558)
Q Consensus 258 ~~~g~~~--~~~~w~~~~l~~~ 277 (558)
.+.|.++ +.+.|++++..+.
T Consensus 373 ~~~g~~P~~~~v~W~k~g~~l~ 394 (475)
T 1iga_A 373 LARGFSPKDVLVRWLQGSQELP 394 (475)
T ss_pred EEeeeECCCCEEEEEECCEECC
Confidence 6667644 4899999976543
|
| >3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-17 Score=134.57 Aligned_cols=92 Identities=25% Similarity=0.316 Sum_probs=81.7
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCC---eEEEccCCCCCCeEEEEEEEe
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~N 204 (558)
.||.|...+.+..+.+|+.+.|.|.+.|.|.|.|.|+|+|..+..+. ++.+..++ +|.|.+++.+|+|.|+|.|.|
T Consensus 12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 90 (107)
T 3knb_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASE-RLSFPADGAEHGLLLTAALPTDAGVYVCRARN 90 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCS-SEECCEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECccccccee-eEEEeecCceEEEEEecCChhhCEEEEEEEEE
Confidence 57888888999999999999999999999999999999999997654 56554433 799999999999999999999
Q ss_pred CCceeeEEEEEEEecc
Q psy10160 205 SYTSDENAVTIRVEGI 220 (558)
Q Consensus 205 ~~G~~~~~~~l~V~~~ 220 (558)
..|..+.++.|.|.++
T Consensus 91 ~~G~~~~~~~l~V~~p 106 (107)
T 3knb_B 91 AAGEAYAAAAVTVLEP 106 (107)
T ss_dssp TTEEEEEEEEEEEEC-
T ss_pred CCCEEEEEEEEEEEcC
Confidence 9999999999999754
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.3e-17 Score=147.26 Aligned_cols=135 Identities=21% Similarity=0.334 Sum_probs=104.0
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceEE--EEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEEeCCccc
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVS--WTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQTTTTTTE 89 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s--~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~~~~~~~ 89 (558)
.+++|.|.+++.+|+|.|+|.+.|..+.... ..+.+.+.+...
T Consensus 64 ~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 108 (201)
T 3s97_C 64 TNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERT----------------------------------- 108 (201)
T ss_dssp TTCCEEESSCCGGGCEEEEEEEEEGGGTEEEECCCEEEEEECCSS-----------------------------------
T ss_pred CCCeEEECcCCcccCeEEEEEEEecCCCcchhhcccceeeccccc-----------------------------------
Confidence 5679999999999999999999997765532 222222211100
Q ss_pred CCCCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEE
Q psy10160 90 ATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQV 169 (558)
Q Consensus 90 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~ 169 (558)
....+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..
T Consensus 109 -----------------------------------~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~ 153 (201)
T 3s97_C 109 -----------------------------------TKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEP 153 (201)
T ss_dssp -----------------------------------CCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBC
T ss_pred -----------------------------------cCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCc
Confidence 001245555555577789999999999999999999999999987
Q ss_pred eccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEe
Q psy10160 170 IENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218 (558)
Q Consensus 170 l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 218 (558)
+.... + ....+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|+
T Consensus 154 ~~~~~-~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 154 MPSTA-E-ISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp CCTTC-E-EETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCCce-e-ecCCCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence 76432 2 23456799999999999999999999999999999999885
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C | Back alignment and structure |
|---|
Probab=99.73 E-value=5.7e-17 Score=151.90 Aligned_cols=140 Identities=23% Similarity=0.363 Sum_probs=103.9
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEEeCCcccC
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQTTTTTTEA 90 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~~~~~~~~ 90 (558)
.+.+|.|.+++.+|+|.|+|.+.|..|... +..+.|...+..
T Consensus 74 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~------------------------------------- 116 (231)
T 3ojm_B 74 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRH------------------------------------- 116 (231)
T ss_dssp GGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCC-------------------------------------
T ss_pred CcceEEEecCCcccCEEEEEEEecccCcccccEEEEEEcCCCC-------------------------------------
Confidence 456899999999999999999999888653 455555443211
Q ss_pred CCCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEE----C
Q psy10160 91 TSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYK----D 166 (558)
Q Consensus 91 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~----~ 166 (558)
.|......+....+.+|+.+.|.|.+.|+|.|.+.|++ +
T Consensus 117 -------------------------------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~ 159 (231)
T 3ojm_B 117 -------------------------------------RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKN 159 (231)
T ss_dssp -------------------------------------CCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBT
T ss_pred -------------------------------------CCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCC
Confidence 01111122445667899999999999999999999999 7
Q ss_pred CEEeccCCceEE---------EccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccCCCCC
Q psy10160 167 GQVIENDGVHYR---------ITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225 (558)
Q Consensus 167 g~~l~~~~~~~~---------~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~ 225 (558)
|..+..++..+. ...+++|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..++.+|.
T Consensus 160 g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p~ 227 (231)
T 3ojm_B 160 GSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPG 227 (231)
T ss_dssp TBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC----
T ss_pred CccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCCCc
Confidence 777654432211 11234799999999999999999999999999999999987765554
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-17 Score=149.64 Aligned_cols=134 Identities=23% Similarity=0.395 Sum_probs=99.8
Q ss_pred CeEEEcCC-CCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEEeCCcccCC
Q psy10160 14 NMLTIKRV-EPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQTTTTTTEAT 91 (558)
Q Consensus 14 ~~L~I~~v-~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~~~~~~~~~ 91 (558)
.+|.|.++ +.+|+|.|+|.+.|..|... +..|.|...+...
T Consensus 63 ~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~------------------------------------- 105 (212)
T 2yd6_A 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIP------------------------------------- 105 (212)
T ss_dssp EEEEECSCCTTTTCEEEEEEEEETTEEEEEEEEEEEECGGGCC-------------------------------------
T ss_pred eEEEEeccCCCCCCeEEEEEEEcCCCcEEEEEEEEEeccCccC-------------------------------------
Confidence 47999999 59999999999999988753 4455554322110
Q ss_pred CCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEec
Q psy10160 92 SPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIE 171 (558)
Q Consensus 92 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~ 171 (558)
...|.+...+....+.+|+.+.|.|.+.|+|.|.+.|++++..+.
T Consensus 106 -----------------------------------~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~ 150 (212)
T 2yd6_A 106 -----------------------------------RGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVD 150 (212)
T ss_dssp -----------------------------------TTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC-
T ss_pred -----------------------------------CCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCcccc
Confidence 012344445566778899999999999999999999999999887
Q ss_pred cC--CceEEEcc---CCeEEEccCCCCCCeEEEEEEEeCCceee-EEEEEEEec
Q psy10160 172 ND--GVHYRITE---SNRLHINQANATDSGEYRCVASNSYTSDE-NAVTIRVEG 219 (558)
Q Consensus 172 ~~--~~~~~~~~---~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~~ 219 (558)
.. ..++.... .+.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|..
T Consensus 151 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~ 204 (212)
T 2yd6_A 151 TSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRG 204 (212)
T ss_dssp -----CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred CcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEe
Confidence 54 22443322 36899999999999999999999999885 556777753
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-17 Score=182.80 Aligned_cols=271 Identities=15% Similarity=0.093 Sum_probs=93.2
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEeCCCCccC----CC--CccccC---ceeEEeccCCCCCCcEEEE
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVA----DP--NAIDYG---TILSSAFPSESASPVVTQT 83 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~~p~~~~~----~~--~~v~~~---~~~~~~~~~~~p~p~v~W~ 83 (558)
..+|.|.+++.+|+|.|+|.+.+.. ...+..+.|..+...... .+ ..+.+| .+.+.|...+ |.+.+.|+
T Consensus 85 ~~~l~I~~~~~~d~G~Y~C~~~~~~-~~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~G~~~~v~L~C~~~~-p~~~v~w~ 162 (772)
T 3v2a_R 85 CKTLTIPKVIGNDTGAYKCFYRETD-LASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSI-SNLNVSLC 162 (772)
T ss_dssp ------------------------------------------------CEEEEEEESSCCCEEEECCCCSC-SSCCEEEE
T ss_pred EEEEEECCCcHhhCEeEEEEEcCCC-EEEEEEEEECCCCCCceEcCcccceeEEEecCCCCeEEEEccCCC-CCcEEEEE
Confidence 4589999999999999999998321 122445555433322221 11 223434 4567777765 88899999
Q ss_pred eC--CcccCCCCc-e----------------eeccccceeeceeEEeeccceeeEEe-eecee--eeCcEEEecCC-ceE
Q psy10160 84 TT--TTTEATSPH-V----------------YAALTHCVPWSNVCLFGARSGYLKET-QNGGY--LVPVKVNITLE-TQV 140 (558)
Q Consensus 84 ~~--~~~~~~~~~-~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~p~~~~~~~~-~~~ 140 (558)
++ +........ . ..|.|.|.+ .+........ ....+ ..++.+.+.+. ...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~-------~~~~~~~~s~~~~~~v~~~~~~~v~~~~~~~~~ 235 (772)
T 3v2a_R 163 ARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEA-------KINDESYQSIMYIVVVVGYRIYDVVLSPSHGIE 235 (772)
T ss_dssp EETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEE-------EETTEEEECCEEEEEEECCCEEEEEEECCSCEE
T ss_pred ecCCCccccCCCceeecCCCCCeEecCCChhhCeEEEEEE-------EECCceEEEEEEEEEEecCccceeeeCCCCceE
Confidence 97 443332211 1 134444444 3322211110 00111 12334444444 468
Q ss_pred eeCCCcEEEEeEeecc--CCCeEEEEECCEEeccCCceE----------EEccCCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 141 FGVGSDISIPCDVDGY--PIPQVFWYKDGQVIENDGVHY----------RITESNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~--P~p~i~W~~~g~~l~~~~~~~----------~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
+.+|+.+.|.|.+.+. |.+.+.|++++..+....... .....++|.|.+++.+|+|.|+|.+.|..|.
T Consensus 236 v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~ 315 (772)
T 3v2a_R 236 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT 315 (772)
T ss_dssp EETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCE
T ss_pred EecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcc
Confidence 8999999999999984 556799999988754422110 0112347999999999999999999999999
Q ss_pred eeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhhhhhhccc
Q psy10160 209 DENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAADKKRRSR 288 (558)
Q Consensus 209 ~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~~~~~~gr 288 (558)
.+..+.|.|..++ .....+.......+. .+......|.+.|.|++.+.|++++....... .....+.
T Consensus 316 ~~~~~~l~V~~~p---~~~~~~~~~~~~~v~---------~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~-~~~~~~~ 382 (772)
T 3v2a_R 316 KKNSTFVRVHEKP---FVAFGSGMESLVEAT---------VGERVRIPAKYLGYPPPEIKWYKNGIPLESNH-TIKAGHV 382 (772)
T ss_dssp EEEEEEEEEECCC---C---------------------------------------------------------------
T ss_pred eeEEEEEEEeCCC---eeEeccCCCCcEEEc---------CCCcEEEEEEEeeeCCCeEEEEECCEeCCCCc-eEcccee
Confidence 8889999997543 222111111111111 13344566777789999999999876554322 1112245
Q ss_pred ccchhhhhhhHHHhhcc
Q psy10160 289 RSLSVVNKWSLRQAFTT 305 (558)
Q Consensus 289 th~q~a~~~t~g~~~~~ 305 (558)
.++..+.....|.|...
T Consensus 383 L~i~~v~~~d~G~Y~C~ 399 (772)
T 3v2a_R 383 LTIMEVSERDTGNYTVI 399 (772)
T ss_dssp -----------------
T ss_pred EEEecCChhcCceEEEE
Confidence 56666777777777653
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-16 Score=142.31 Aligned_cols=155 Identities=19% Similarity=0.210 Sum_probs=115.7
Q ss_pred cCceeEEeccCCCCC--CcEEEEeCCcccCCCCceee-------ccccceeeceeEEeeccceeeEEeeeceeeeCcEEE
Q psy10160 63 YGTILSSAFPSESAS--PVVTQTTTTTTEATSPHVYA-------ALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVN 133 (558)
Q Consensus 63 ~~~~~~~~~~~~~p~--p~v~W~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 133 (558)
+..+.+.|...+.|. |.+.|++++..+........ .......-.|.|.+.+. +.......+.+..+|.+.
T Consensus 18 G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~~~~~l~V~~~p~~~ 96 (190)
T 2wv3_A 18 LLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFV-SAPKANATIEVKAAPDIT 96 (190)
T ss_dssp SSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCCSEEEEEESSCCGGGCEEEEEEEEET-TEEEEEEEEEEECCCEEE
T ss_pred CceEEEEEEeccCCCCceEEEEEECCEECcccceEeccEEEEEecCCcccCEEEEEEEEeC-CcccccEEEEEecCCccc
Confidence 346678898888876 88999999877765533210 00011112345555555 445555566667788888
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCCCeEEEEE--CCEEecc--CCceEEEccC---CeEEEccCC-CCCCeEEEEEEEeC
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYK--DGQVIEN--DGVHYRITES---NRLHINQAN-ATDSGEYRCVASNS 205 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~--~g~~l~~--~~~~~~~~~~---~sL~I~~v~-~~D~G~Y~C~a~N~ 205 (558)
..+....+.+|+.+.|.|.+.|+|.|.+.|++ ++..+.. ...++.+..+ ++|.|.+++ .+|+|.|+|.|.|.
T Consensus 97 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~ 176 (190)
T 2wv3_A 97 GHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNS 176 (190)
T ss_dssp EECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECS
T ss_pred ccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEec
Confidence 88888889999999999999999999999999 7777642 2345555443 279999999 79999999999999
Q ss_pred CceeeEEEEEEEe
Q psy10160 206 YTSDENAVTIRVE 218 (558)
Q Consensus 206 ~G~~~~~~~l~V~ 218 (558)
.|....++.|.|.
T Consensus 177 ~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 177 IGSASVSTVLRVR 189 (190)
T ss_dssp SCEEEEEEEEEEE
T ss_pred CCcceeEEEEEEE
Confidence 9999999998884
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-17 Score=173.04 Aligned_cols=259 Identities=16% Similarity=0.177 Sum_probs=142.5
Q ss_pred CCceEec------CCeEEEcCCCCCCCEEEEEEEEeCCc------------ce-EEEEEEEEe----CCCCccCCC-Ccc
Q psy10160 6 SENYELN------KNMLTIKRVEPERLGAYTCQAYNGLG------------RA-VSWTVTLQA----LPSEKVADP-NAI 61 (558)
Q Consensus 6 ~~r~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~g------------~~-~s~~l~V~~----~p~~~~~~~-~~v 61 (558)
.+|+.+. ..+|.|.+++.+|+|.|+|.+.|..| .. ....+.|.. .|......+ ..+
T Consensus 65 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~ 144 (457)
T 1hzh_H 65 QDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKS 144 (457)
T ss_dssp TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCC
T ss_pred cCceEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccc
Confidence 4577642 14899999999999999999999765 11 234555544 222222222 223
Q ss_pred c-cCceeEEeccCCC-CC-CcEEEEeCCcccCCCC--ce--eecccc---cee--------eceeEEeeccceeeEEeee
Q psy10160 62 D-YGTILSSAFPSES-AS-PVVTQTTTTTTEATSP--HV--YAALTH---CVP--------WSNVCLFGARSGYLKETQN 123 (558)
Q Consensus 62 ~-~~~~~~~~~~~~~-p~-p~v~W~~~~~~~~~~~--~~--~~g~~~---~~~--------~~~~~~~~~~~~~~~~~~~ 123 (558)
. ++.+.+.|.+.+. |. |.+.|++++..+.... .. ..+.|. .+. -.|.|.+.+..+.......
T Consensus 145 ~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~dG~Y~C~a~n~~~~~~~~~~ 224 (457)
T 1hzh_H 145 TSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKK 224 (457)
T ss_dssp CTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGTSCCEEEEEEGGGTEEEEEE
T ss_pred cCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCCceEEEEEEeCCCCcceeEE
Confidence 3 3466788988876 64 7899999885432100 00 000000 000 2345666655433222111
Q ss_pred ce-----------------eeeCcEE-EecCCceE-eeCCCcEEEEeEeeccCCC----eEEEEECCEEeccCCc-eEEE
Q psy10160 124 GG-----------------YLVPVKV-NITLETQV-FGVGSDISIPCDVDGYPIP----QVFWYKDGQVIENDGV-HYRI 179 (558)
Q Consensus 124 ~~-----------------~~~p~~~-~~~~~~~~-v~~G~~v~L~C~~~g~P~p----~i~W~~~g~~l~~~~~-~~~~ 179 (558)
.. +..+|.+ ...+.... +.+|+.+.|.|.+.|.|++ .|.|+|++..+..... ....
T Consensus 225 v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~ 304 (457)
T 1hzh_H 225 AEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREE 304 (457)
T ss_dssp CCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEE
T ss_pred ecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCcccccccccccee
Confidence 11 1124444 33333333 6789999999999998653 8999999988754321 1122
Q ss_pred ccCCeEEEcc---CCCCC---CeEEEEEEEeCCceeeEEEEEEEe-ccCCCCCCCCCCccccceeEEeceeeecccceeE
Q psy10160 180 TESNRLHINQ---ANATD---SGEYRCVASNSYTSDENAVTIRVE-GIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQF 252 (558)
Q Consensus 180 ~~~~sL~I~~---v~~~D---~G~Y~C~a~N~~G~~~~~~~l~V~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 252 (558)
..++++.+.. +...| +|.|+|.|.|..+.......+.+. ....+|.+...+... .....+.
T Consensus 305 ~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~-----------~~~~~~~- 372 (457)
T 1hzh_H 305 QYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSR-----------DELTKNQ- 372 (457)
T ss_dssp CTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCCG-----------GGGGSSE-
T ss_pred cCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCCc-----------cccCCCc-
Confidence 3455555553 33555 999999999986655433333220 112222222111000 0001123
Q ss_pred EEEeccCCCCCCC--cccccchhhhh
Q psy10160 253 CCESCTRAGQLPS--YGPHIKRAVEA 276 (558)
Q Consensus 253 ~c~~~~~~g~~~~--~~~w~~~~l~~ 276 (558)
....|.+.|.+++ .+.|++++..+
T Consensus 373 ~~l~C~~~g~~p~~~~v~W~k~g~~l 398 (457)
T 1hzh_H 373 VSLTCLVKGFYPSDIAVEWESNGQPE 398 (457)
T ss_dssp EEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred EEEEEEEEeEECCCCEEEEEECCEEC
Confidence 4566666676554 78999997654
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=147.59 Aligned_cols=153 Identities=13% Similarity=0.115 Sum_probs=103.8
Q ss_pred cCceeEEeccC-CCCCCcEEEEeCCcccCCCCceeeccc---c--ceee---------ceeEEeeccceeeEEeeec---
Q psy10160 63 YGTILSSAFPS-ESASPVVTQTTTTTTEATSPHVYAALT---H--CVPW---------SNVCLFGARSGYLKETQNG--- 124 (558)
Q Consensus 63 ~~~~~~~~~~~-~~p~p~v~W~~~~~~~~~~~~~~~g~~---~--~~~~---------~~~~~~~~~~~~~~~~~~~--- 124 (558)
++.+.+.|... +.|.|.++|++++..+..+.+...... + .+.+ .|.|.+.|...........
T Consensus 17 g~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng~a~~~~~~~~~~~ 96 (207)
T 3rbs_A 17 KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGD 96 (207)
T ss_dssp GGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEETTEEEEEEEEECTH
T ss_pred CCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEECCCeEEEEEEEEEcc
Confidence 34555656554 579999999999988866544321100 0 1111 3456555532221111000
Q ss_pred ---------ee-------eeCcEEEecCCceEeeCCCcEEEEeEeecc-CCCeEEEEECCEEeccCCceEEEcc-CCeEE
Q psy10160 125 ---------GY-------LVPVKVNITLETQVFGVGSDISIPCDVDGY-PIPQVFWYKDGQVIENDGVHYRITE-SNRLH 186 (558)
Q Consensus 125 ---------~~-------~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P~p~i~W~~~g~~l~~~~~~~~~~~-~~sL~ 186 (558)
.. ..+|.+...+ ...+.+|+.+.|.|.+.|. |.|.+.|+|+|.++..+. ++.... ..+|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~-~~~~~~~~~~L~ 174 (207)
T 3rbs_A 97 VFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE-KHDFKDGICTLL 174 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCC-CCCCSSEEEEEE
T ss_pred chhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCC-ceEcCCCEEEEE
Confidence 00 0256665554 4778899999999999999 999999999999997654 333222 23699
Q ss_pred EccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 187 INQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 187 I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
|.+++.+|+|.|+|.|.|..|....++.|.+
T Consensus 175 I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~ 205 (207)
T 3rbs_A 175 ITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205 (207)
T ss_dssp ETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred ECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence 9999999999999999999999999888875
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-17 Score=166.13 Aligned_cols=185 Identities=15% Similarity=0.130 Sum_probs=126.1
Q ss_pred ceEecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCCCccccC-ceeEEeccCC-----CCCCcE
Q psy10160 8 NYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPNAIDYG-TILSSAFPSE-----SASPVV 80 (558)
Q Consensus 8 r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~~~v~~~-~~~~~~~~~~-----~p~p~v 80 (558)
+....+++|.|.+++.+|+|.|+|.+.|..+... +..+.|..+|... ....+.+| .+.+.|...+ .|.|.+
T Consensus 136 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~--~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i 213 (363)
T 1wio_A 136 KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS--SIVYKKEGEQVEFSFPLAFTVEKLTGSGEL 213 (363)
T ss_dssp CEEEESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSE--EEEEEETBCCEEEECCCCCCCCSSCEEEEE
T ss_pred cccccceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCC--CceEEecCCEEEEEEEEecccccCCCceeE
Confidence 3445678999999999999999999999765442 3455555444322 22234444 5668897777 788999
Q ss_pred EEEeCCcccCCC--------Cceeec-----------c--ccce---------eeceeEEeecc--ceeeEEeeeceeee
Q psy10160 81 TQTTTTTTEATS--------PHVYAA-----------L--THCV---------PWSNVCLFGAR--SGYLKETQNGGYLV 128 (558)
Q Consensus 81 ~W~~~~~~~~~~--------~~~~~g-----------~--~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~ 128 (558)
.|++++..+... .+.... . ...+ .-.|.|.+.|. .+.......+.+.
T Consensus 214 ~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~- 292 (363)
T 1wio_A 214 WWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVM- 292 (363)
T ss_dssp EEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEE-
T ss_pred EEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEE-
Confidence 999998776652 221110 0 0111 22456777777 6654444333222
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCe--EEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQ--VFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~--i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
-..|+.+.|.|.+.|.|.|. +.|+|++..+.. +++|.|.+++.+|+|.|+|.|.|.
T Consensus 293 ------------~v~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~---------~~~l~i~~v~~~d~G~Y~C~a~~~- 350 (363)
T 1wio_A 293 ------------RATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV---------SKREKAVWVLNPEAGMWQCLLSDS- 350 (363)
T ss_dssp ------------EECCCSSSEEEEEESSCCTTCCEEEECSSSSCSE---------EESSSEEEESSCCSEEEEEEECSS-
T ss_pred ------------EecCCCeeEEEEEccccCCCccEEEEeCCCceee---------eeeeeeeeeccccceeEEEEEecC-
Confidence 12389999999999999999 999999976643 235788999999999999999964
Q ss_pred ceeeEEEEEEE
Q psy10160 207 TSDENAVTIRV 217 (558)
Q Consensus 207 G~~~~~~~l~V 217 (558)
|....+..+.|
T Consensus 351 ~~~~~~~~~~V 361 (363)
T 1wio_A 351 GQVLLESNIKV 361 (363)
T ss_dssp SSCCEEEEEEE
T ss_pred CeEEEecceEe
Confidence 55556666666
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-16 Score=146.17 Aligned_cols=123 Identities=20% Similarity=0.330 Sum_probs=98.0
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEEeCCcccCCC
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQTTTTTTEATS 92 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~~~~~~~~~~ 92 (558)
+++|.|.+++.+|+|.|+|.+.|..|...+..+.|.+.
T Consensus 67 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~------------------------------------------ 104 (195)
T 2c5d_C 67 VSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE------------------------------------------ 104 (195)
T ss_dssp EEEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC------------------------------------------
T ss_pred ccEEEEEeccccCCcEEEEEEEeCCCceecccEEEEEe------------------------------------------
Confidence 46899999999999999999999877654322333321
Q ss_pred CceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCC-eEEEEECCEEec
Q psy10160 93 PHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIE 171 (558)
Q Consensus 93 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p-~i~W~~~g~~l~ 171 (558)
.+|.+...+....+.+|+.+.|.|.+.|.|.| .+.|++++..+.
T Consensus 105 -----------------------------------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~ 149 (195)
T 2c5d_C 105 -----------------------------------GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLA 149 (195)
T ss_dssp -----------------------------------CSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSS
T ss_pred -----------------------------------cCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEecc
Confidence 23344445556778899999999999999999 999999999887
Q ss_pred cCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceee-EEEEEEE
Q psy10160 172 NDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDE-NAVTIRV 217 (558)
Q Consensus 172 ~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 217 (558)
..... ..+++|.|.+++ |+|.|+|.|.|..|... ..+.|.|
T Consensus 150 ~~~~~---~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 150 TAPGH---GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp SSTTS---SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCCCc---CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 65422 455689999987 89999999999999985 7888888
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-16 Score=148.03 Aligned_cols=136 Identities=26% Similarity=0.476 Sum_probs=102.9
Q ss_pred CCceEecCCeEEEcCCCCCCCEEEEEEEEeCCcce---EEEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEE
Q psy10160 6 SENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA---VSWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQ 82 (558)
Q Consensus 6 ~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~---~s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W 82 (558)
..|+.+.+++|.|.+++.+|+|.|+|.+.|..|.. .+..+.|..+|...
T Consensus 57 ~~r~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~---------------------------- 108 (212)
T 1f97_A 57 ADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKP---------------------------- 108 (212)
T ss_dssp TTTEEEETTEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCC----------------------------
T ss_pred cCcEEeeceeEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCc----------------------------
Confidence 56788888999999999999999999999987632 24455554433221
Q ss_pred EeCCcccCCCCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeE-eeccCCCeE
Q psy10160 83 TTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCD-VDGYPIPQV 161 (558)
Q Consensus 83 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~-~~g~P~p~i 161 (558)
..+....+.+|+.+.|.|. +.|.|.|.+
T Consensus 109 ---------------------------------------------------~~~~~~~~~~g~~~~l~C~~~~~~p~~~i 137 (212)
T 1f97_A 109 ---------------------------------------------------TISVPSSVTIGNRAVLTCSEHDGSPPSEY 137 (212)
T ss_dssp ---------------------------------------------------EEECCSEEETTSCEEEEEECSCCBSCCEE
T ss_pred ---------------------------------------------------ccCCccccCCCCeEEEEEEcccCcCCCEE
Confidence 0011235678999999999 799999999
Q ss_pred EEEECCE-EeccCC--------ceEEE-ccCCeEEEccCCCCCCeEEEEEEEeCCcee--eEEEEEEEecc
Q psy10160 162 FWYKDGQ-VIENDG--------VHYRI-TESNRLHINQANATDSGEYRCVASNSYTSD--ENAVTIRVEGI 220 (558)
Q Consensus 162 ~W~~~g~-~l~~~~--------~~~~~-~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~--~~~~~l~V~~~ 220 (558)
.|++++. .+.... .++.. ..+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.+.
T Consensus 138 ~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~~ 208 (212)
T 1f97_A 138 SWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVEL 208 (212)
T ss_dssp EEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEESS
T ss_pred EEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEEe
Confidence 9999999 776532 12333 335689999999999999999999999998 56778887643
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.1e-17 Score=152.60 Aligned_cols=81 Identities=23% Similarity=0.406 Sum_probs=61.8
Q ss_pred CceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCC-----------------------ceEEEccCCeEEEccCCCC
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG-----------------------VHYRITESNRLHINQANAT 193 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~-----------------------~~~~~~~~~sL~I~~v~~~ 193 (558)
....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.... .+......++|.|.+++.+
T Consensus 144 ~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 223 (250)
T 2fbo_J 144 EVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKIT 223 (250)
T ss_dssp SEEECCTTCCEEECCCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGG
T ss_pred ceEEecCCCcEEEEEEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcc
Confidence 34566789999999999999999999999988775421 1122223468999999999
Q ss_pred CCeEEEEEEEeCCc---eeeEEEEEEE
Q psy10160 194 DSGEYRCVASNSYT---SDENAVTIRV 217 (558)
Q Consensus 194 D~G~Y~C~a~N~~G---~~~~~~~l~V 217 (558)
|+|.|+|.|.|..| ....++.|.|
T Consensus 224 D~G~Y~C~a~N~~g~~g~~~~~~~l~V 250 (250)
T 2fbo_J 224 DAGRVWCELATGQGELDADRSSTILKV 250 (250)
T ss_dssp GCEEEEEEEESSSSGGGEEEEEEEEEC
T ss_pred cCEEEEEEecCCccccCccceeEEEeC
Confidence 99999999999555 5555555543
|
| >3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.7e-17 Score=129.25 Aligned_cols=92 Identities=24% Similarity=0.469 Sum_probs=80.5
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCC-ceEEEccC---CeEEEccCCCCCCeEEEEEEE
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG-VHYRITES---NRLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~-~~~~~~~~---~sL~I~~v~~~D~G~Y~C~a~ 203 (558)
.||.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+.... .++.+... .+|.|.+++.+|+|.|+|.|.
T Consensus 4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 83 (100)
T 3knb_A 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG 83 (100)
T ss_dssp EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEE
Confidence 57888888889999999999999999999999999999999987643 35554433 379999999999999999999
Q ss_pred eCCceeeEEEEEEEec
Q psy10160 204 NSYTSDENAVTIRVEG 219 (558)
Q Consensus 204 N~~G~~~~~~~l~V~~ 219 (558)
|..|..+.++.|.|++
T Consensus 84 N~~G~~~~~~~l~V~~ 99 (100)
T 3knb_A 84 NEFGSDSATVNIHIRS 99 (100)
T ss_dssp ETTEEEEEEEEEEEEC
T ss_pred ECCCEEEEEEEEEEEE
Confidence 9999999999999964
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=148.29 Aligned_cols=85 Identities=18% Similarity=0.268 Sum_probs=64.5
Q ss_pred CceEeeCCCcEEEEeEeeccCC--CeEEEEECCEEeccCCc---eEE-------EccCCeEEEccCCCCCCeEEEEEEEe
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPI--PQVFWYKDGQVIENDGV---HYR-------ITESNRLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~--p~i~W~~~g~~l~~~~~---~~~-------~~~~~sL~I~~v~~~D~G~Y~C~a~N 204 (558)
....+.+|+.++|.|.+.|.|. +.+.|++++..+..... +.. ....++|.|.+++.+|+|.|+|.|.|
T Consensus 113 ~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 192 (213)
T 2x1w_L 113 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS 192 (213)
T ss_dssp SCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEEC
T ss_pred CCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEec
Confidence 3447889999999999999664 47999999876432110 000 01124699999999999999999999
Q ss_pred CCceeeEEEEEEEeccC
Q psy10160 205 SYTSDENAVTIRVEGIF 221 (558)
Q Consensus 205 ~~G~~~~~~~l~V~~~~ 221 (558)
..|..+..+.|.|.+.+
T Consensus 193 ~~g~~~~~~~l~V~~~p 209 (213)
T 2x1w_L 193 GLMTKKNSTFVRVHEDP 209 (213)
T ss_dssp SSCEEEEEEEEEEEC--
T ss_pred CCCcEEEEEEEEEeccc
Confidence 99999999999997544
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=147.79 Aligned_cols=155 Identities=17% Similarity=0.279 Sum_probs=107.8
Q ss_pred CceeEEeccCCCCCCcEEEEeCCcccCCCCc----ee--ec-c---------ccceeeceeEEeeccceeeEE-eeecee
Q psy10160 64 GTILSSAFPSESASPVVTQTTTTTTEATSPH----VY--AA-L---------THCVPWSNVCLFGARSGYLKE-TQNGGY 126 (558)
Q Consensus 64 ~~~~~~~~~~~~p~p~v~W~~~~~~~~~~~~----~~--~g-~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 126 (558)
..+.+.|...+.|.|.+.|++++..+..... .. .+ . .....-.|.|.+.+..+.... .....+
T Consensus 25 ~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v 104 (217)
T 2vr9_A 25 EPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104 (217)
T ss_dssp SCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEEEecCCCccccccceEEE
Confidence 4667889888899999999999876654311 10 00 0 001112345555554443211 111222
Q ss_pred e-eCcEEEecCCceEeeCCCcEEEEeEe-eccCCCeEEEEECCEEecc-------CCceEEEccCCeEEEccCCCCCCeE
Q psy10160 127 L-VPVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIEN-------DGVHYRITESNRLHINQANATDSGE 197 (558)
Q Consensus 127 ~-~p~~~~~~~~~~~v~~G~~v~L~C~~-~g~P~p~i~W~~~g~~l~~-------~~~~~~~~~~~sL~I~~v~~~D~G~ 197 (558)
. .++.+...+....+.+|+.+.|.|.+ .|.|.|.+.|++++..+.. ...++....+++|.|.+++.+|+|.
T Consensus 105 ~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 184 (217)
T 2vr9_A 105 AVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGN 184 (217)
T ss_dssp CEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEETTTEEEESSCCSTTCEE
T ss_pred EEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEecCCCcEEEeeCCHHHCeE
Confidence 2 35556666777888999999999999 9999999999999998873 2335555667899999999999999
Q ss_pred EEEEEEeCCceeeEEEEEEEe
Q psy10160 198 YRCVASNSYTSDENAVTIRVE 218 (558)
Q Consensus 198 Y~C~a~N~~G~~~~~~~l~V~ 218 (558)
|+|.|.|..|....+..+.|.
T Consensus 185 Y~C~a~N~~G~~~~~~~~lv~ 205 (217)
T 2vr9_A 185 YKCIAQNLVGTRESSYAKLIV 205 (217)
T ss_dssp EEEEEEETTEEEECCCEEEEE
T ss_pred EEEEEEcccceeccccEEEEE
Confidence 999999999998766555543
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=147.92 Aligned_cols=151 Identities=17% Similarity=0.249 Sum_probs=108.2
Q ss_pred cCceeEEeccCCCCCCcEEEEeCCcccCCCCc--------------------------eeeccccceeeceeEEeeccce
Q psy10160 63 YGTILSSAFPSESASPVVTQTTTTTTEATSPH--------------------------VYAALTHCVPWSNVCLFGARSG 116 (558)
Q Consensus 63 ~~~~~~~~~~~~~p~p~v~W~~~~~~~~~~~~--------------------------~~~g~~~~~~~~~~~~~~~~~~ 116 (558)
+..+.+.|...+.|.|.+.|++++..+..... ...|. |.|.+.+..+
T Consensus 24 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~-------Y~C~~~n~~g 96 (212)
T 2v9r_A 24 GEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV-------YVCVARNYLG 96 (212)
T ss_dssp TCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEE-------EEEEEEETTE
T ss_pred CCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeE-------EEEEEECCCC
Confidence 34666889888889999999999866543221 11233 4455554433
Q ss_pred eeE-Eeeeceee-eCcEEEecCCceEeeCCCcEEEEeEe-eccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCC
Q psy10160 117 YLK-ETQNGGYL-VPVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANAT 193 (558)
Q Consensus 117 ~~~-~~~~~~~~-~p~~~~~~~~~~~v~~G~~v~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~ 193 (558)
... ....+.+. .++.+...+....+.+|+.+.|.|.+ .|.|.|.+.|++++..+.....++.. .+++|.|.+++.+
T Consensus 97 ~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~-~~~~L~i~~~~~~ 175 (212)
T 2v9r_A 97 EAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITI-RGGKLMITYTRKS 175 (212)
T ss_dssp EEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEE-ETTEEEESSCCGG
T ss_pred ceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEc-cCCeEEEeeCCHh
Confidence 221 11111221 34555566677788999999999998 99999999999999999876545543 4679999999999
Q ss_pred CCeEEEEEEEeCCceeeE-EEEEEEeccC
Q psy10160 194 DSGEYRCVASNSYTSDEN-AVTIRVEGIF 221 (558)
Q Consensus 194 D~G~Y~C~a~N~~G~~~~-~~~l~V~~~~ 221 (558)
|+|.|+|.|.|..|.... .+.|.|.++|
T Consensus 176 d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P 204 (212)
T 2v9r_A 176 DAGKYVCVGTNMVGERESEVAELTVLERP 204 (212)
T ss_dssp GCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred hCeeEEEEEecccCceecceEEEEEEeCc
Confidence 999999999999998754 4889997544
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-16 Score=153.58 Aligned_cols=231 Identities=16% Similarity=0.173 Sum_probs=145.9
Q ss_pred cccC-ceeEEeccCCCC-CCcEEEEe-CCcccCCCC-ceee----ccccce---------eeceeEEeeccce-eeEEee
Q psy10160 61 IDYG-TILSSAFPSESA-SPVVTQTT-TTTTEATSP-HVYA----ALTHCV---------PWSNVCLFGARSG-YLKETQ 122 (558)
Q Consensus 61 v~~~-~~~~~~~~~~~p-~p~v~W~~-~~~~~~~~~-~~~~----g~~~~~---------~~~~~~~~~~~~~-~~~~~~ 122 (558)
+..| .+.+.|...+.| .+.+.|++ ++..+.... +... +....+ .-.|.|.+.+..+ ......
T Consensus 14 v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~ 93 (291)
T 1qz1_A 14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATV 93 (291)
T ss_dssp EETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEE
T ss_pred EeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEE
Confidence 4444 566889888876 69999999 665554322 1110 001111 1235666666653 223344
Q ss_pred eceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccC-CceEEEccCCeEEEccCCCCCCeEEEEE
Q psy10160 123 NGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEND-GVHYRITESNRLHINQANATDSGEYRCV 201 (558)
Q Consensus 123 ~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 201 (558)
.+.+..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... ..++....+++|.|.+++.+|+|.|+|.
T Consensus 94 ~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 173 (291)
T 1qz1_A 94 NVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE 173 (291)
T ss_dssp EEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEEE
T ss_pred EEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEEccCccccCeEEEEE
Confidence 455567888888888888999999999999999999999999999887542 3466667778999999999999999999
Q ss_pred EEeCCcee--eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhh
Q psy10160 202 ASNSYTSD--ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAA 279 (558)
Q Consensus 202 a~N~~G~~--~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~ 279 (558)
|.|..+.. ...+.|.|..++ .+...+... ...+.. +......|.+.|.|+|.+.|++++......
T Consensus 174 a~n~~~~~~~~~~~~l~v~~~p---~~~~~~~~~-------~~~~~~---g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~ 240 (291)
T 1qz1_A 174 GRILARGEINFKDIQVIVNVPP---TVQARQSIV-------NATANL---GQSVTLVCDADGFPEPTMSWTKDGEPIENE 240 (291)
T ss_dssp EEEGGGTEEEEEEEEEEEEEEE---EEEESCSEE-------EEETTS---CCCEEEEEEEEEESCCEEEEEETTEECCCC
T ss_pred EEecCCCceeeEEEEEEEecCC---ccccccccc-------cccccc---CceEEEEEEEEEeCCCcEEEEECCEECcCC
Confidence 99986443 355677775433 111110000 011222 333445555668999999999997654332
Q ss_pred hh---hh---hhcccccchhhhhhhHHHhhc
Q psy10160 280 AA---DK---KRRSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 280 ~~---~~---~~~grth~q~a~~~t~g~~~~ 304 (558)
.. .. ......++..+.....|.|..
T Consensus 241 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 271 (291)
T 1qz1_A 241 EEDDEKHIFSDDSSELTIRNVDKNDEAEYVC 271 (291)
T ss_dssp --CCSSEEECTTSCEEEECSCCGGGCEEEEE
T ss_pred CCCCcceEEcCCCcEEEEEecChhcCEEEEE
Confidence 20 10 111234555555565665544
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-16 Score=141.86 Aligned_cols=118 Identities=19% Similarity=0.367 Sum_probs=94.9
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE--EEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEEeCCcccCC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV--SWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQTTTTTTEAT 91 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~--s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~~~~~~~~~ 91 (558)
++|.|.+++.+|+|.|+|.+.|..|... ...+.|..
T Consensus 60 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~------------------------------------------ 97 (182)
T 1rhf_A 60 GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG------------------------------------------ 97 (182)
T ss_dssp EEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEEC------------------------------------------
T ss_pred EEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEEEEec------------------------------------------
Confidence 6899999999999999999999877544 33444432
Q ss_pred CCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCC-eEEEEECCEEe
Q psy10160 92 SPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVI 170 (558)
Q Consensus 92 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p-~i~W~~~g~~l 170 (558)
+|.+...+....+.+|+.+.|.|.+.|.|.| .+.|++++..+
T Consensus 98 -------------------------------------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~ 140 (182)
T 1rhf_A 98 -------------------------------------VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKI 140 (182)
T ss_dssp -------------------------------------SCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEEC
T ss_pred -------------------------------------CCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeEC
Confidence 3334445556778899999999999999999 99999999988
Q ss_pred ccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceee-EEEEEEE
Q psy10160 171 ENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDE-NAVTIRV 217 (558)
Q Consensus 171 ~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 217 (558)
.... ..+++|.|.++ +|+|.|+|.|.|..|... ..+.|.|
T Consensus 141 ~~~~-----~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V 181 (182)
T 1rhf_A 141 GGPA-----PSPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL 181 (182)
T ss_dssp SCSE-----ESSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCCC-----CCceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence 6532 15568999988 599999999999999885 4778777
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-15 Score=149.34 Aligned_cols=209 Identities=15% Similarity=0.148 Sum_probs=139.1
Q ss_pred cccC-ceeEEeccCCCCCCcEEEEeCCcccCCCCc-eee----cccccee---------eceeEEeeccceeeEEeeece
Q psy10160 61 IDYG-TILSSAFPSESASPVVTQTTTTTTEATSPH-VYA----ALTHCVP---------WSNVCLFGARSGYLKETQNGG 125 (558)
Q Consensus 61 v~~~-~~~~~~~~~~~p~p~v~W~~~~~~~~~~~~-~~~----g~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 125 (558)
+..| .+.+.|...+.|.|.+.|++++..+..... ... +....+. -.|.|.+.+..+.......+.
T Consensus 16 v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 95 (305)
T 2nzi_A 16 VRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLE 95 (305)
T ss_dssp ECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEE
T ss_pred EeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCCccceEEEE
Confidence 3444 566889999999999999999877764422 110 1111121 145677777766655555555
Q ss_pred eeeCcEEEec-----CCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEc---cCCeEEEcc-CCCCCCe
Q psy10160 126 YLVPVKVNIT-----LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT---ESNRLHINQ-ANATDSG 196 (558)
Q Consensus 126 ~~~p~~~~~~-----~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~---~~~sL~I~~-v~~~D~G 196 (558)
+..++.+..+ +....+.+|+.+.|.|.+.|.|.|.+.|++++..+.... ++.+. ...+|.|.+ +..+|+|
T Consensus 96 V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~~d~G 174 (305)
T 2nzi_A 96 VEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG-HYQVIVTRSFTSLVFPNGVERKDAG 174 (305)
T ss_dssp ECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSS-SCEEEECSSEEEEEETTCCCSTTCE
T ss_pred EecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCC-cEEEEEcCCceEEEEecCCccCccE
Confidence 6566655432 245678899999999999999999999999998886544 44333 235799999 9999999
Q ss_pred EEEEEEEeCCceeeEEEEEEEeccCCCCCCCCCCccccceeEEecee-eecccceeEEEEeccCCCCCCCcccccchh
Q psy10160 197 EYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRY-CQHHYYSQFCCESCTRAGQLPSYGPHIKRA 273 (558)
Q Consensus 197 ~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~ 273 (558)
.|+|.|.|..|.....+.|.|.+++.+|....+.......+.+.+.. ...+..... .|.....+.+...|.+..
T Consensus 175 ~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~---~y~v~~~~~~~~~w~~~~ 249 (305)
T 2nzi_A 175 FYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKIT---NYIVEKCATTAERWLRVG 249 (305)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEE---EEEEEEEETTSCCEEEEE
T ss_pred EEEEEEEeCCCceeeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCcee---EEEEEEecCCCCccEECc
Confidence 99999999999999999999988777666543333333334433321 111221222 233334556667787654
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.7e-16 Score=143.66 Aligned_cols=138 Identities=20% Similarity=0.369 Sum_probs=104.8
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceEE--EEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEEeCCccc
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVS--WTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQTTTTTTE 89 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s--~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~~~~~~~ 89 (558)
.+++|.|.+++.+|+|.|+|.+.|..|...+ ..+.|...+........
T Consensus 63 ~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~------------------------------ 112 (218)
T 3k0w_A 63 NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVD------------------------------ 112 (218)
T ss_dssp CSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCC------------------------------
T ss_pred CCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccc------------------------------
Confidence 3568999999999999999999998886543 45555543321100000
Q ss_pred CCCCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEE
Q psy10160 90 ATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQV 169 (558)
Q Consensus 90 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~ 169 (558)
.....+|.+...+....+.+|+.+.|.|.+.|+|.|.+.|++++..
T Consensus 113 ----------------------------------~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~ 158 (218)
T 3k0w_A 113 ----------------------------------GVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELP 158 (218)
T ss_dssp ----------------------------------SBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEE
T ss_pred ----------------------------------cccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEE
Confidence 0001245566667778889999999999999999999999999998
Q ss_pred eccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCce-eeEEEEEEEecc
Q psy10160 170 IENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTS-DENAVTIRVEGI 220 (558)
Q Consensus 170 l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~~ 220 (558)
+... ..++|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.+.
T Consensus 159 ~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~ 203 (218)
T 3k0w_A 159 LTHE-------TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL 203 (218)
T ss_dssp CTTC-------CSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC-
T ss_pred CCCC-------CCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCC
Confidence 8653 2358999999999999999999999988 467788888653
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=142.94 Aligned_cols=121 Identities=15% Similarity=0.234 Sum_probs=90.2
Q ss_pred CCceEe-cCCeEEEcCCCCCCCEEEEEEEEeCCcce-EEEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEE
Q psy10160 6 SENYEL-NKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQT 83 (558)
Q Consensus 6 ~~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~ 83 (558)
++|+.+ .+++|.|.+++.+|+|.|+|.+.|..|.. .+..+.|.+....
T Consensus 52 ~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~------------------------------ 101 (176)
T 1hng_A 52 SGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMV------------------------------ 101 (176)
T ss_dssp STTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCC------------------------------
T ss_pred CCeEEECCCCcEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCC------------------------------
Confidence 457765 67789999999999999999999999886 3434444332110
Q ss_pred eCCcccCCCCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEE
Q psy10160 84 TTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFW 163 (558)
Q Consensus 84 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W 163 (558)
.+|.+. ..+..+.|.|.+.|.|.|.|.|
T Consensus 102 --------------------------------------------~~p~i~--------~~~~~v~L~C~~~g~p~p~i~W 129 (176)
T 1hng_A 102 --------------------------------------------SKPMIY--------WECSNATLTCEVLEGTDVELKL 129 (176)
T ss_dssp --------------------------------------------CCCEEE--------EETTTTEEEEECSSCSSCEEEE
T ss_pred --------------------------------------------CCCEEE--------ecCCcEEEEEEecCCCCcEEEE
Confidence 001111 1234589999999999999999
Q ss_pred EECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 164 YKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 164 ~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
+|+|..+..+. .+.|.+++.+|+|.|+|.|.|..|.......|.+
T Consensus 130 ~~~g~~l~~~~---------~~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~ 174 (176)
T 1hng_A 130 YQGKEHLRSLR---------QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174 (176)
T ss_dssp EETTEEEEEES---------SSEEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred EECCEECCCCC---------cEEEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence 99998876432 2456688899999999999999999988776655
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-15 Score=138.65 Aligned_cols=153 Identities=20% Similarity=0.201 Sum_probs=110.5
Q ss_pred eeEEeccCCC-CCCcEEEEeCCcccCCCCceeeccccc---ee---------eceeEEeeccceeeEEeeeceee-----
Q psy10160 66 ILSSAFPSES-ASPVVTQTTTTTTEATSPHVYAALTHC---VP---------WSNVCLFGARSGYLKETQNGGYL----- 127 (558)
Q Consensus 66 ~~~~~~~~~~-p~p~v~W~~~~~~~~~~~~~~~g~~~~---~~---------~~~~~~~~~~~~~~~~~~~~~~~----- 127 (558)
+.+.|...+. |.|.+.|++++..+..+.+........ +. -.|.|.+.+..+.........+.
T Consensus 20 ~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~ 99 (212)
T 2r15_A 20 IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEA 99 (212)
T ss_dssp EEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHH
T ss_pred EEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEeeccch
Confidence 3567777774 689999999998877665543211111 11 13566666655444433222211
Q ss_pred ----------------eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccC----CeEEE
Q psy10160 128 ----------------VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES----NRLHI 187 (558)
Q Consensus 128 ----------------~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~----~sL~I 187 (558)
.|+.+...+....+.+|+.+.|.|.+.|+|.|.+.|+|++..+.... ++.+... .+|.|
T Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~-~~~~~~~~~~~~~L~i 178 (212)
T 2r15_A 100 YAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTD-HCNLKFEAGRTAYFTI 178 (212)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCS-SEEEEEETTTEEEEEE
T ss_pred hhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCC-CEEEEEcCCCEEEEEE
Confidence 34444555667788999999999999999999999999999998654 4444332 28999
Q ss_pred ccCCCCCCeEEEEEEEeCCceeeEEEEEEEec
Q psy10160 188 NQANATDSGEYRCVASNSYTSDENAVTIRVEG 219 (558)
Q Consensus 188 ~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 219 (558)
.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus 179 ~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 210 (212)
T 2r15_A 179 NGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 210 (212)
T ss_dssp SSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred cCcchHHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence 99999999999999999999999999999863
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=9.8e-19 Score=180.93 Aligned_cols=259 Identities=14% Similarity=0.142 Sum_probs=145.0
Q ss_pred CCceEec------CCeEEEcCCCCCCCEEEEEEEEeCCcce-EEEEEEEEe----CCCCccCCC-Ccccc-CceeEEecc
Q psy10160 6 SENYELN------KNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQA----LPSEKVADP-NAIDY-GTILSSAFP 72 (558)
Q Consensus 6 ~~r~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~s~~l~V~~----~p~~~~~~~-~~v~~-~~~~~~~~~ 72 (558)
.+|+.+. +.+|.|.+++.+|+|.|+|.+.|..+.. ....+.|.. .|......+ ..+.. ..+.+.|.+
T Consensus 64 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~ 143 (434)
T 1igy_B 64 KDKATLTRDRSSNTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLV 143 (434)
T ss_dssp TTTEECCBCGGGCBBCEEECSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEE
T ss_pred cccEEEEEECCCCEEEEEECCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEE
Confidence 4577753 2489999999999999999999854322 234555542 122222222 22333 466788988
Q ss_pred CCC-CCC-cEEEEeCCcccCCC--Cce-eeccccc---ee--------eceeEEeeccceeeEEeeeceee---------
Q psy10160 73 SES-ASP-VVTQTTTTTTEATS--PHV-YAALTHC---VP--------WSNVCLFGARSGYLKETQNGGYL--------- 127 (558)
Q Consensus 73 ~~~-p~p-~v~W~~~~~~~~~~--~~~-~~g~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~~~--------- 127 (558)
.+. |.| .+.|++++...... ... ..+.|.+ +. -.+.|.+.+..+.........+.
T Consensus 144 ~g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~dg~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~ 223 (434)
T 1igy_B 144 KGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCIC 223 (434)
T ss_dssp EEEBSSCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTSSCCEEEEECTTTTCCEEEECCCCCCCCCCCCC
T ss_pred eeecCCCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCCCcEEEEEEeCCCCccceeeccCCCCCCccccC
Confidence 876 776 89999987642100 000 0011111 00 24566666665432111111110
Q ss_pred ----eCcEEEecCCceE-eeCCCcEEEEeEeeccC----CCeEEEEECCEEeccCCceEE-------EccCCeEEEccCC
Q psy10160 128 ----VPVKVNITLETQV-FGVGSDISIPCDVDGYP----IPQVFWYKDGQVIENDGVHYR-------ITESNRLHINQAN 191 (558)
Q Consensus 128 ----~p~~~~~~~~~~~-v~~G~~v~L~C~~~g~P----~p~i~W~~~g~~l~~~~~~~~-------~~~~~sL~I~~v~ 191 (558)
.|..+..++.... +.+|+.+.|.|.+.|.| .+.|.|+|++..+........ ....++|.|.++.
T Consensus 224 ~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 303 (434)
T 1igy_B 224 TVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQD 303 (434)
T ss_dssp CCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHH
T ss_pred CCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHH
Confidence 1232233333222 78999999999999984 357999999977643211000 0123479999999
Q ss_pred CCCCeEEEEEEEeCCceeeEEEEEEE-eccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCC--ccc
Q psy10160 192 ATDSGEYRCVASNSYTSDENAVTIRV-EGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPS--YGP 268 (558)
Q Consensus 192 ~~D~G~Y~C~a~N~~G~~~~~~~l~V-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~--~~~ 268 (558)
.+|+|.|+|.|.|..|.......+.+ .....+|.+...+.... . .. +......|.+.|.+++ .+.
T Consensus 304 ~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~---~------~~---~~~~~L~C~~~g~~P~~~~v~ 371 (434)
T 1igy_B 304 WLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKE---Q------MA---KDKVSLTCMITDFFPEDITVE 371 (434)
T ss_dssp HHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCCEEECCCSS---S------SS---SSEEEEEEEEEEEBCSCEEEE
T ss_pred ccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCEEEEECCCHH---H------hc---CCcEEEEEEEEeeECCCeEEE
Confidence 99999999999999886532222221 01122333221111000 0 01 1124456666575443 799
Q ss_pred ccchhhhh
Q psy10160 269 HIKRAVEA 276 (558)
Q Consensus 269 w~~~~l~~ 276 (558)
|++++..+
T Consensus 372 W~k~g~~l 379 (434)
T 1igy_B 372 WQSDGQAP 379 (434)
T ss_dssp EEETTSCC
T ss_pred EEECCEec
Confidence 99998655
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-16 Score=141.34 Aligned_cols=75 Identities=17% Similarity=0.187 Sum_probs=66.1
Q ss_pred eEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEe
Q psy10160 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 218 (558)
..+.+|+.+.|.|.+.+.|.|.+.|++++..+ ...+++|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 107 ~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~ 178 (184)
T 2ny1_B 107 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKN--------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 178 (184)
T ss_dssp SEEETTCCEEEEEECCTTCCCEEEEECTTSCE--------EEESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc--------ccCceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEE
Confidence 35679999999999999999999999987544 2345789999999999999999999999999999999998
Q ss_pred ccC
Q psy10160 219 GIF 221 (558)
Q Consensus 219 ~~~ 221 (558)
+.+
T Consensus 179 ~~p 181 (184)
T 2ny1_B 179 AFQ 181 (184)
T ss_dssp CCC
T ss_pred ecC
Confidence 765
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.67 E-value=8.2e-17 Score=160.09 Aligned_cols=198 Identities=16% Similarity=0.141 Sum_probs=93.2
Q ss_pred cccC-ceeEEeccCCC-CCCcEEEEeCCcccCCCCce---------------eeccccceeeceeEEeeccceeeEEeee
Q psy10160 61 IDYG-TILSSAFPSES-ASPVVTQTTTTTTEATSPHV---------------YAALTHCVPWSNVCLFGARSGYLKETQN 123 (558)
Q Consensus 61 v~~~-~~~~~~~~~~~-p~p~v~W~~~~~~~~~~~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (558)
+..| .+.+.|...+. |.|.+.|++++..+....+. ..|.|.|.+.+. .. ......+.+...
T Consensus 20 v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~-~~~~~~l~V~~~ 97 (334)
T 1ry7_B 20 FGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLT-QR-VLCHFSVRVTDA 97 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEeccceEEEeecccccCEEEEEEEEeC-Ce-EEEEEEEEEecc
Confidence 4444 55688888876 67899999998776554322 256777766654 11 111111111110
Q ss_pred ce----------------eeeCcEEEec----CCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCce--EE-Ec
Q psy10160 124 GG----------------YLVPVKVNIT----LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH--YR-IT 180 (558)
Q Consensus 124 ~~----------------~~~p~~~~~~----~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~--~~-~~ 180 (558)
.. ...+|.+..+ .....+.+|+.+.|.|.+.|.|.|.+.|+|++..+...... +. ..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~ 177 (334)
T 1ry7_B 98 PSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH 177 (334)
T ss_dssp ---------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCT
T ss_pred CccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccceeccc
Confidence 00 0013333321 22356789999999999999999999999999887654311 11 12
Q ss_pred cCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccCC-CCCCCCCCccccceeEEeceeeecccceeEEEEeccC
Q psy10160 181 ESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFI-HPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTR 259 (558)
Q Consensus 181 ~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~ 259 (558)
.+.+|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+. +|.+.. ..... ..+. . +......|.+
T Consensus 178 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~-~~~~~-~~~~------~---G~~v~l~C~~ 246 (334)
T 1ry7_B 178 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQA-GLPAN-QTAV------L---GSDVEFHCKV 246 (334)
T ss_dssp TTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCT-TCSCC-EEEE------S---SCCEEECCCC
T ss_pred ceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEe-cCCCc-eEEe------C---CCCEEEEEEE
Confidence 345899999999999999999999999999999999975432 222221 11111 1111 1 3445577888
Q ss_pred CCCCCCcccccc
Q psy10160 260 AGQLPSYGPHIK 271 (558)
Q Consensus 260 ~g~~~~~~~w~~ 271 (558)
.|.|+|.+.|++
T Consensus 247 ~g~p~p~v~W~~ 258 (334)
T 1ry7_B 247 YSDAQPHIQWLK 258 (334)
T ss_dssp BCSSCEEEEEEE
T ss_pred ecCCCCeEEEEE
Confidence 899999999999
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-15 Score=137.80 Aligned_cols=158 Identities=14% Similarity=0.207 Sum_probs=115.0
Q ss_pred cccC-ceeEEeccCCCCCCcEEEEeCCcccCCCCceeecccc---ce---------eeceeEEeeccceeeEEeeeceee
Q psy10160 61 IDYG-TILSSAFPSESASPVVTQTTTTTTEATSPHVYAALTH---CV---------PWSNVCLFGARSGYLKETQNGGYL 127 (558)
Q Consensus 61 v~~~-~~~~~~~~~~~p~p~v~W~~~~~~~~~~~~~~~g~~~---~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 127 (558)
+..| .+.+.|...+.|.|.+.|++++..+....+....... .+ .-.|.|.+.+..+.........+.
T Consensus 19 v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~ 98 (197)
T 3lcy_A 19 TKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQ 98 (197)
T ss_dssp EETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred EeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCceeEEEEEEEE
Confidence 3444 5668898888999999999998877655443211111 11 124566666666555555555555
Q ss_pred eCcEEEec---CCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccC---CeEEEccCCC-CCCeEEEE
Q psy10160 128 VPVKVNIT---LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES---NRLHINQANA-TDSGEYRC 200 (558)
Q Consensus 128 ~p~~~~~~---~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~---~sL~I~~v~~-~D~G~Y~C 200 (558)
.+|.+... +....+.+|+.+.|.|.+.|+|.|.+.|++++..+.... ++.+... ++|.|.++.. +|+|.|+|
T Consensus 99 ~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C 177 (197)
T 3lcy_A 99 ATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSE-NITIENTEHYTHLVMKNVQRKTHAGKYKV 177 (197)
T ss_dssp EEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCS-SEEEEECSSEEEEEESSCCHHHHCEEEEE
T ss_pred cCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCC-ceEEEEcCCEEEEEEccccchhhCceEEE
Confidence 55555432 345567899999999999999999999999999987654 4444433 5799999995 89999999
Q ss_pred EEEeCCceeeEEEEEEEec
Q psy10160 201 VASNSYTSDENAVTIRVEG 219 (558)
Q Consensus 201 ~a~N~~G~~~~~~~l~V~~ 219 (558)
.|.|..|.....+.|.|.+
T Consensus 178 ~a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 178 QLSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp EEECSSCEEEEEEEEEEEC
T ss_pred EEEcCcCceEEEEEEEEec
Confidence 9999999999999999864
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-15 Score=148.26 Aligned_cols=203 Identities=15% Similarity=0.165 Sum_probs=132.5
Q ss_pred cccC-ceeEEeccCCCCCCcEEEEe-CCcccCCCCceee---ccccce---------eeceeEEeeccceeeE-Eeeece
Q psy10160 61 IDYG-TILSSAFPSESASPVVTQTT-TTTTEATSPHVYA---ALTHCV---------PWSNVCLFGARSGYLK-ETQNGG 125 (558)
Q Consensus 61 v~~~-~~~~~~~~~~~p~p~v~W~~-~~~~~~~~~~~~~---g~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~ 125 (558)
+..| .+.+.|...+.|. .+.|++ ++..+....+... +....+ .-.|.|.+.+..+... ....+.
T Consensus 16 v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~ 94 (291)
T 2wim_A 16 LSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE 94 (291)
T ss_dssp EETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEE
T ss_pred ecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEE
Confidence 3344 5668888887764 899999 5555544333221 101111 1134666666554332 233444
Q ss_pred eeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEecc-CCceEEEccCCeEEEccCCCCCCeEEEEEEEe
Q psy10160 126 YLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN-DGVHYRITESNRLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 126 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~-~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N 204 (558)
+..++.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.. ...++....+++|.|.+++.+|+|.|+|.+.|
T Consensus 95 v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n 174 (291)
T 2wim_A 95 IYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRV 174 (291)
T ss_dssp EECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEEEE
T ss_pred ecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEEEEEEE
Confidence 55667776677788899999999999999999999999999988764 34467777788999999999999999999999
Q ss_pred CCcee--eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhh
Q psy10160 205 SYTSD--ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAE 277 (558)
Q Consensus 205 ~~G~~--~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~ 277 (558)
..+.. ...+.+.|..++ .+...+.... .....+......|.+.|.|+|.+.|++++....
T Consensus 175 ~~~~~~~~~~~~~~v~~~p---~~~~~~~~~~----------~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~ 236 (291)
T 2wim_A 175 EARGEIDFRDIIVIVNVPP---AISMPQKSFN----------ATAERGEEMTFSCRASGSPEPAISWFRNGKLIE 236 (291)
T ss_dssp TTTTEEEEEEEEEEEEBCC---CCBCSCSEEE----------CCSSSCCEEEEECBCCCBSCCEEEEEETTEECC
T ss_pred CCCCeeEEeeEEEEeccCC---ccccCccccc----------ceecCCCeEEEEEEeecCCCCeEEEEECCEECc
Confidence 88554 355666665433 2221111000 011124556678888899999999999976543
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.66 E-value=7.6e-16 Score=139.00 Aligned_cols=147 Identities=23% Similarity=0.330 Sum_probs=106.9
Q ss_pred cCceeEEeccCCCCCC--cEEEEeCCcccCCCCce------------eeccccceeeceeEEeeccceeeEEeeeceeee
Q psy10160 63 YGTILSSAFPSESASP--VVTQTTTTTTEATSPHV------------YAALTHCVPWSNVCLFGARSGYLKETQNGGYLV 128 (558)
Q Consensus 63 ~~~~~~~~~~~~~p~p--~v~W~~~~~~~~~~~~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (558)
+..+.+.|...+.|.| .+.|++++..+...... ..|.|.|. +.+... ....+.+..
T Consensus 13 G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~~~~~l~i~~~~d~G~Y~C~-------~~n~~~---~~~~l~V~~ 82 (184)
T 3b5h_A 13 GSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCV-------FLPEPM---GTANIQLHG 82 (184)
T ss_dssp TTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSEEEEEECGGGCCEEEEEE-------EESTTS---CEEEEEECC
T ss_pred CCCEEEEEECCCCCCCceEEEEEeCCEEeecccccCCcEEEEEechhhCeEEEEE-------EECCcC---cEEEEEEec
Confidence 3456688888887777 89999998766544321 23444444 443211 122333456
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccC-CCeEEEEE---CCEE-eccC-CceEEEccCC---eEEEccCC-CCCCeEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYP-IPQVFWYK---DGQV-IEND-GVHYRITESN---RLHINQAN-ATDSGEY 198 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P-~p~i~W~~---~g~~-l~~~-~~~~~~~~~~---sL~I~~v~-~~D~G~Y 198 (558)
+|.+...+....+.+|+.+.|.|.+.|+| .|.+.|++ ++.. +... ..++.+..++ +|.|.+++ .+|+|.|
T Consensus 83 ~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y 162 (184)
T 3b5h_A 83 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY 162 (184)
T ss_dssp SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEE
T ss_pred CCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceE
Confidence 78787777778899999999999999999 79999999 4544 3322 2456554433 79999999 9999999
Q ss_pred EEEEEeCCceeeEEEEEEEec
Q psy10160 199 RCVASNSYTSDENAVTIRVEG 219 (558)
Q Consensus 199 ~C~a~N~~G~~~~~~~l~V~~ 219 (558)
+|.|.|..|.....+.|.|.+
T Consensus 163 ~C~a~N~~g~~~~~~~l~V~~ 183 (184)
T 3b5h_A 163 RCNGTSSKGSDQAIITLRVRS 183 (184)
T ss_dssp EEEEEETTEEEEEEEEEEEC-
T ss_pred EEEEEeCCCcceEEEEEEEec
Confidence 999999999999999999853
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G | Back alignment and structure |
|---|
Probab=99.66 E-value=7.6e-17 Score=148.50 Aligned_cols=133 Identities=26% Similarity=0.466 Sum_probs=99.6
Q ss_pred CCceEecCCeEEEcCCCCCCCEEEEEEEEeCCcce-E--EEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEE
Q psy10160 6 SENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA-V--SWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQ 82 (558)
Q Consensus 6 ~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~--s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W 82 (558)
..|+...+++|.|.+++.+|+|.|+|.+.|..|.. . +..+.|..+|...
T Consensus 60 ~~r~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~---------------------------- 111 (209)
T 1nbq_A 60 EDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKP---------------------------- 111 (209)
T ss_dssp TTTCEEETTEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCC----------------------------
T ss_pred cCceEeeccEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCC----------------------------
Confidence 45777777999999999999999999999986632 2 4445554443221
Q ss_pred EeCCcccCCCCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEe-eccCCCeE
Q psy10160 83 TTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDV-DGYPIPQV 161 (558)
Q Consensus 83 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~-~g~P~p~i 161 (558)
..+....+.+|+.+.|.|.+ .|.|.|.+
T Consensus 112 ---------------------------------------------------~~~~~~~~~~g~~~~l~C~~~~~~p~~~v 140 (209)
T 1nbq_A 112 ---------------------------------------------------TVNIPSSATIGNRAVLTCSEQDGSPPSEY 140 (209)
T ss_dssp ---------------------------------------------------CCCCBSEEETTSCEEECCCCCSCBSCCEE
T ss_pred ---------------------------------------------------CcccccceecCCEEEEEEeCCCCCCCcee
Confidence 01112346789999999997 99999999
Q ss_pred EEEECCEEeccCCc--------eEEEc-cCCeEEEccCCCCCCeEEEEEEEeCCcee--eEEEEEEE
Q psy10160 162 FWYKDGQVIENDGV--------HYRIT-ESNRLHINQANATDSGEYRCVASNSYTSD--ENAVTIRV 217 (558)
Q Consensus 162 ~W~~~g~~l~~~~~--------~~~~~-~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~--~~~~~l~V 217 (558)
.|++++..+..... ++.+. .+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 141 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V 207 (209)
T 1nbq_A 141 TWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207 (209)
T ss_dssp EEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred EEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence 99999988765421 22222 35689999999999999999999999998 44555555
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.6e-16 Score=142.38 Aligned_cols=79 Identities=15% Similarity=0.270 Sum_probs=55.8
Q ss_pred eEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEcc----CCeEEEccCCCCCCeEEEEEEEeCCce-----e
Q psy10160 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE----SNRLHINQANATDSGEYRCVASNSYTS-----D 209 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~----~~sL~I~~v~~~D~G~Y~C~a~N~~G~-----~ 209 (558)
..+.+|+.++|.|.+.|. .|.+.|+|+|..+.....++.... .++|.|.+++.+|+|.|+|.|.|..+. .
T Consensus 110 ~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~ 188 (198)
T 1ugn_A 110 PVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLP 188 (198)
T ss_dssp SEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCC
T ss_pred cccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCc
Confidence 467799999999999998 789999999988754332222222 368999999999999999999998762 1
Q ss_pred eEEEEEEEe
Q psy10160 210 ENAVTIRVE 218 (558)
Q Consensus 210 ~~~~~l~V~ 218 (558)
+..+.|.|.
T Consensus 189 S~~~~l~V~ 197 (198)
T 1ugn_A 189 SDLLELLVL 197 (198)
T ss_dssp CCCEEEEEE
T ss_pred CceEEEEec
Confidence 456666664
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-17 Score=163.21 Aligned_cols=182 Identities=16% Similarity=0.237 Sum_probs=121.3
Q ss_pred CCEEEEEEEEeCCcceEEEEEEEEeCCCCccCC-CCccccC-ceeEEeccCCCCCCcEEEEeCCcccCCCCc--------
Q psy10160 25 RLGAYTCQAYNGLGRAVSWTVTLQALPSEKVAD-PNAIDYG-TILSSAFPSESASPVVTQTTTTTTEATSPH-------- 94 (558)
Q Consensus 25 D~G~Y~C~a~n~~g~~~s~~l~V~~~p~~~~~~-~~~v~~~-~~~~~~~~~~~p~p~v~W~~~~~~~~~~~~-------- 94 (558)
|.|.|+|.+.+..... .+.+-.+|.....+ ...+.+| .+.+.|...+.|.|.+.|++++........
T Consensus 136 ~~~~~~C~~~~~l~~l---~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~ 212 (347)
T 2ifg_A 136 PEQKLQCHGQGPLAHM---PNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSL 212 (347)
T ss_dssp GGGCCCCSSSSCSSCC---CCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEE
T ss_pred cccCCCCCCChHHhcC---CcccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecccc
Confidence 6799999988732211 11111122222111 1233444 666899999999999999998865432111
Q ss_pred ---------eeec-cccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEE
Q psy10160 95 ---------VYAA-LTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWY 164 (558)
Q Consensus 95 ---------~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~ 164 (558)
...| .|. |.+.+..+.........+..||.+ ....+.+|+.+.|.|.+.|.|.|.|.|+
T Consensus 213 ~L~i~~v~~~D~G~~Y~-------C~a~n~~g~~~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~ 281 (347)
T 2ifg_A 213 GLTLANVTSDLNRKNVT-------CWAENDVGRAEVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWL 281 (347)
T ss_dssp EEEEESCCSTTTTCCEE-------ECCEETTEECCEEECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCCEEEEE
T ss_pred eEEEeeCChHHCCCeEE-------EEEEcCCCCEEEEEEEEEcCCCee----eeccCccCceEEEEEEeeecCCCcEEEE
Confidence 1134 444 445555444444455555566664 1122457999999999999999999999
Q ss_pred ECCEEeccCCceE-EEc--------cCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEecc
Q psy10160 165 KDGQVIENDGVHY-RIT--------ESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGI 220 (558)
Q Consensus 165 ~~g~~l~~~~~~~-~~~--------~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 220 (558)
|+|..+....... ... .+++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.++
T Consensus 282 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 346 (347)
T 2ifg_A 282 FNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 346 (347)
T ss_dssp ETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCC
T ss_pred eCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCC
Confidence 9999987543211 111 2457999999999999999999999999999999988654
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=99.65 E-value=4.8e-15 Score=150.55 Aligned_cols=162 Identities=17% Similarity=0.198 Sum_probs=121.8
Q ss_pred cCceeEEeccCCCCCCcEEEEeC--CcccCCC-----Cceeec---cccce---------eeceeEEeeccceeeEEeee
Q psy10160 63 YGTILSSAFPSESASPVVTQTTT--TTTEATS-----PHVYAA---LTHCV---------PWSNVCLFGARSGYLKETQN 123 (558)
Q Consensus 63 ~~~~~~~~~~~~~p~p~v~W~~~--~~~~~~~-----~~~~~g---~~~~~---------~~~~~~~~~~~~~~~~~~~~ 123 (558)
++.+.+.|...+.|.|.+.|+++ +..+... .+.... ....+ .-.|.|.+.|..+.......
T Consensus 15 G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 94 (389)
T 2jll_A 15 NGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMY 94 (389)
T ss_dssp TSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred CCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCCCcceEEE
Confidence 34666899999999999999999 6554431 222110 01111 22457777777777666667
Q ss_pred ceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCC-ceEEEcc---CCeEEEccCCCCCCeEEE
Q psy10160 124 GGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG-VHYRITE---SNRLHINQANATDSGEYR 199 (558)
Q Consensus 124 ~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~-~~~~~~~---~~sL~I~~v~~~D~G~Y~ 199 (558)
+.+..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.... .++.+.. ..+|.|.+++.+|+|.|+
T Consensus 95 l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 174 (389)
T 2jll_A 95 LDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYN 174 (389)
T ss_dssp EEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEE
T ss_pred EEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEE
Confidence 777788888777666678999999999999999999999999999987643 2444332 247999999999999999
Q ss_pred EEEEeCCceeeEEEEEEEeccCCCC
Q psy10160 200 CVASNSYTSDENAVTIRVEGIFIHP 224 (558)
Q Consensus 200 C~a~N~~G~~~~~~~l~V~~~~~~p 224 (558)
|.|.|..|.....+.+.|..++.+|
T Consensus 175 C~a~N~~G~~~~~~~l~v~~~P~~P 199 (389)
T 2jll_A 175 CTATNHIGTRFQEYILALADVPSSP 199 (389)
T ss_dssp EEEEETTEEEEEEEEEEECCCCCCC
T ss_pred EEEEcCCCcEEEEEEEEecCCCCCC
Confidence 9999999999988888886665444
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.3e-16 Score=154.74 Aligned_cols=221 Identities=14% Similarity=0.066 Sum_probs=134.3
Q ss_pred CceeEEeccCCC---------CCCcEEEEeCCcccCCCCce--------------eec-cccceeeceeEEeeccceeeE
Q psy10160 64 GTILSSAFPSES---------ASPVVTQTTTTTTEATSPHV--------------YAA-LTHCVPWSNVCLFGARSGYLK 119 (558)
Q Consensus 64 ~~~~~~~~~~~~---------p~p~v~W~~~~~~~~~~~~~--------------~~g-~~~~~~~~~~~~~~~~~~~~~ 119 (558)
..+.+.|...+. |.+.+.|++++..+....+. ..| .|.|. +.+..+...
T Consensus 45 ~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~Gs~Y~C~-------a~n~~g~~~ 117 (329)
T 3oq3_B 45 EPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCT-------VTTKNGDCV 117 (329)
T ss_dssp SCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTTEETTEEEESSCCGGGGGCCEEEE-------EECTTSCEE
T ss_pred CeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCceeecceEEEcCCChHhCCCcEEEE-------EEeCCCcee
Confidence 355678877764 66889999998765432211 244 45554 444443211
Q ss_pred Eee-eceeeeCcEEEecCCceEeeCCCcEEEEeEeeccC-CCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeE
Q psy10160 120 ETQ-NGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYP-IPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGE 197 (558)
Q Consensus 120 ~~~-~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P-~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~ 197 (558)
... ...+..||.+........+.+|+.+.|.|.+.|.| .|.+.|+|++..+...+.++... +++|.|.+++.+|+|.
T Consensus 118 ~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~-~~~L~I~~v~~~D~G~ 196 (329)
T 3oq3_B 118 QGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS-GQNLIIHNPELEDSGR 196 (329)
T ss_dssp EEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE-TTEEEECSCCGGGCEE
T ss_pred eEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC-CCEEEEeecChhhCEE
Confidence 111 12233344443333334467899999999999999 99999999999997655566654 6899999999999999
Q ss_pred EEEEEEeC--CceeeEE----EEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCC---CC-cc
Q psy10160 198 YRCVASNS--YTSDENA----VTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQL---PS-YG 267 (558)
Q Consensus 198 Y~C~a~N~--~G~~~~~----~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~---~~-~~ 267 (558)
|+|.|.|. .|..... +.|.|..++..+..... .. . ..+..|....+ .|.+.|.| +| .+
T Consensus 197 Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~---~~-~-----~~v~~G~~~~l---~C~~~g~p~~~~~i~v 264 (329)
T 3oq3_B 197 YDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLIL---DP-K-----INVTIGEPANI---TCTAVSTSLLVDDVLI 264 (329)
T ss_dssp EEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEEC---CS-E-----EEECTTSCEEE---EEEEEETTCCTTCCEE
T ss_pred EEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceec---CC-e-----eEEecCCCEEE---EEEEEECCCCCCCcEE
Confidence 99999997 6655433 77888654422110001 11 1 12233344444 45555776 67 77
Q ss_pred cccchhhhhhhhhhh---------hhhcccccchhhhhhhHH-Hhhc
Q psy10160 268 PHIKRAVEAEAAAAD---------KKRRSRRSLSVVNKWSLR-QAFT 304 (558)
Q Consensus 268 ~w~~~~l~~~~~~~~---------~~~~grth~q~a~~~t~g-~~~~ 304 (558)
.|++++......... ....+...+..+.....| .|..
T Consensus 265 ~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C 311 (329)
T 3oq3_B 265 DWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTC 311 (329)
T ss_dssp EEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEE
T ss_pred EEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEE
Confidence 999997653221111 012334555566666666 5544
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=126.36 Aligned_cols=99 Identities=19% Similarity=0.226 Sum_probs=85.6
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEcc---CCeEEEccCCCCCCeEEEEEEEe
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE---SNRLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~---~~sL~I~~v~~~D~G~Y~C~a~N 204 (558)
.||.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+..+. ++.+.. +.+|.|.+++.+|+|.|+|.|.|
T Consensus 6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 84 (114)
T 2cqv_A 6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESE-HMKVENSENGSKLTILAARQEHCGCYTLLVEN 84 (114)
T ss_dssp CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSS-SEEEEECSSEEEEEETTCCTTTCEEEEEEEEC
T ss_pred CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCC-CEEEEEcCCEEEEEECCCChhcCEEEEEEEEE
Confidence 57888888889999999999999999999999999999999887654 555443 34799999999999999999999
Q ss_pred CCceeeEEEEEEEeccCCCCCCC
Q psy10160 205 SYTSDENAVTIRVEGIFIHPSCR 227 (558)
Q Consensus 205 ~~G~~~~~~~l~V~~~~~~p~~~ 227 (558)
..|.....+.|.|.+.+.+|..+
T Consensus 85 ~~g~~~~~~~l~V~~~p~~P~~p 107 (114)
T 2cqv_A 85 KLGSRQAQVNLTVVDKPDPPAGT 107 (114)
T ss_dssp SSCEEECCEEEEEECSCSCCCCC
T ss_pred CCCcEEEEEEEEEECCCCCCCCC
Confidence 99999999999998877666544
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-16 Score=142.76 Aligned_cols=131 Identities=14% Similarity=0.255 Sum_probs=91.5
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcc-eEEEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEEeCCcccC
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGR-AVSWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQTTTTTTEA 90 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~~~~~~~~ 90 (558)
.+++|.|.+++.+|+|.|+|.+.|..|. ..+..+.|.+....
T Consensus 56 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~------------------------------------- 98 (196)
T 3p2t_A 56 NKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAY------------------------------------- 98 (196)
T ss_dssp SEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSS-------------------------------------
T ss_pred ceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCCC-------------------------------------
Confidence 4478999999999999999999998873 22333333332100
Q ss_pred CCCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEe
Q psy10160 91 TSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVI 170 (558)
Q Consensus 91 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l 170 (558)
.+|.+...+.. .+.+|+.++|.|.+.+. .+.+.|+|+|..+
T Consensus 99 -------------------------------------~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~ 139 (196)
T 3p2t_A 99 -------------------------------------SKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAH 139 (196)
T ss_dssp -------------------------------------CCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCC
T ss_pred -------------------------------------CCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCcc
Confidence 12222233332 56899999999999984 5689999999877
Q ss_pred ccCCceEE---EccCCeEEEccCCCCCCeEEEEEEEeCCc-----eeeEEEEEEEe
Q psy10160 171 ENDGVHYR---ITESNRLHINQANATDSGEYRCVASNSYT-----SDENAVTIRVE 218 (558)
Q Consensus 171 ~~~~~~~~---~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G-----~~~~~~~l~V~ 218 (558)
........ ...+++|.|.+++.+|+|.|+|.|.|..+ ..+..+.|.|.
T Consensus 140 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 195 (196)
T 3p2t_A 140 PLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVS 195 (196)
T ss_dssp GGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEEC
T ss_pred cceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEeC
Confidence 54332211 12356899999999999999999999876 23455666663
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.5e-16 Score=124.13 Aligned_cols=93 Identities=24% Similarity=0.420 Sum_probs=84.2
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
.||.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.....++.+..+++|.|.+++.+|+|.|+|.|.|..|
T Consensus 7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 86 (100)
T 2edj_A 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSG 86 (100)
T ss_dssp SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEECSSC
T ss_pred CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCCC
Confidence 57888888889999999999999999999999999999999888655577777788999999999999999999999999
Q ss_pred eeeEEEEEEEecc
Q psy10160 208 SDENAVTIRVEGI 220 (558)
Q Consensus 208 ~~~~~~~l~V~~~ 220 (558)
.....+.|.|.++
T Consensus 87 ~~~~~~~l~V~~~ 99 (100)
T 2edj_A 87 ETSWSAVLDVTES 99 (100)
T ss_dssp CCBCCEEEEEESC
T ss_pred CEEEEEEEEEecC
Confidence 9999999999654
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.5e-16 Score=145.04 Aligned_cols=129 Identities=18% Similarity=0.179 Sum_probs=88.6
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEEeCCcccCCC
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQTTTTTTEATS 92 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~~~~~~~~~~ 92 (558)
+.+|.|.+++.+|+|.|+|.|.|..|.. +..+.+.+.+...
T Consensus 82 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~-~~~v~~~~~~~~~-------------------------------------- 122 (226)
T 4f80_A 82 KAALRIHNVTASDSGKYLCYFQDGDFYE-KALVELKVAALGS-------------------------------------- 122 (226)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCC--------------------------------------
T ss_pred eEEEEEeeCchHHCeeEEEEEECCCcEE-EEEEEEeecccee--------------------------------------
Confidence 3589999999999999999999988764 3344444332211
Q ss_pred CceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeec-cCCCeEEEEECCEEe-
Q psy10160 93 PHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDG-YPIPQVFWYKDGQVI- 170 (558)
Q Consensus 93 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g-~P~p~i~W~~~g~~l- 170 (558)
..+....+.+|+.+.|.|.+.| .|.|.|.|+|++..+
T Consensus 123 -----------------------------------------~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~ 161 (226)
T 4f80_A 123 -----------------------------------------DLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENI 161 (226)
T ss_dssp -----------------------------------------CCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBC
T ss_pred -----------------------------------------cccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEc
Confidence 0111233567999999999988 599999999965443
Q ss_pred ccCCceEEEccCCe---EEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccC
Q psy10160 171 ENDGVHYRITESNR---LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIF 221 (558)
Q Consensus 171 ~~~~~~~~~~~~~s---L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 221 (558)
...........++. +.+.+++.+|+|.|+|.|.|..|..+..+.|.|.+|.
T Consensus 162 ~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep~ 215 (226)
T 4f80_A 162 PTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADPF 215 (226)
T ss_dssp CCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTTT
T ss_pred CCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCCC
Confidence 33222233334443 3455688999999999999999999999999986654
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* | Back alignment and structure |
|---|
Probab=99.64 E-value=9.7e-16 Score=141.01 Aligned_cols=151 Identities=11% Similarity=0.063 Sum_probs=102.6
Q ss_pred ccccC-ceeEEeccCCCCCCc-EEEEeCCcccCCCCc---------eeeccccceeeceeEEeeccceeeEEeeeceeee
Q psy10160 60 AIDYG-TILSSAFPSESASPV-VTQTTTTTTEATSPH---------VYAALTHCVPWSNVCLFGARSGYLKETQNGGYLV 128 (558)
Q Consensus 60 ~v~~~-~~~~~~~~~~~p~p~-v~W~~~~~~~~~~~~---------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (558)
.+.+| .+.+.|...+.|.|. +.|++++..+..... ...|.|.|.+.+. .. .....+.+..
T Consensus 18 ~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~~~L~i~~v~~~D~G~Y~C~a~n~-------~~--s~~~~l~V~~ 88 (204)
T 3sgj_C 18 RVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQTQLS-------TL--SDPVQLEVHI 88 (204)
T ss_dssp EEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCSSEEEESSCCGGGCEEEEEEETTS-------BC--CCCEEEEEEC
T ss_pred EEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCccEEEEecccccCCEEEEEEeCCC-------cc--cccEEEEEec
Confidence 34444 566899999988876 999999877765432 2356677665432 11 1112223334
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeecc-CCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeC-C
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGY-PIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNS-Y 206 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~-~ 206 (558)
++.+...+. ..+.+|+.+.|.|.+.+. |.|.+.|+|+|..+... ..+++|.|.+++.+|+|.|+|.|.|. .
T Consensus 89 ~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~------~~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 161 (204)
T 3sgj_C 89 GWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF------HHNSDFYIPKATLKDSGSYFCRGLVGSK 161 (204)
T ss_dssp SSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE------EECCCEEESSCCGGGCEEEEEEEEETTE
T ss_pred CceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecc------cCCceEEECcCCcccCEEEEEEEEeCCC
Confidence 454444443 678899999999999766 56889999999886431 23568999999999999999999994 4
Q ss_pred ceeeEEEEEEEeccCCCCCC
Q psy10160 207 TSDENAVTIRVEGIFIHPSC 226 (558)
Q Consensus 207 G~~~~~~~l~V~~~~~~p~~ 226 (558)
+..+..+.|.|.+++..|.+
T Consensus 162 ~~~s~~~~l~V~~~~~~P~i 181 (204)
T 3sgj_C 162 NVSSETVQITITQGLAVSTI 181 (204)
T ss_dssp EEECCCEEEEEEC-------
T ss_pred ceecCcEEEEEeCcCCCCcc
Confidence 55578889999877655543
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-16 Score=144.22 Aligned_cols=69 Identities=12% Similarity=0.171 Sum_probs=45.6
Q ss_pred eEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEc-c---CCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT-E---SNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~---~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
..+.+|+.++|.|.+.+.| |.+.|+|+|..+.......... . .++|.|.+++.+|+|.|+|.|.|..+.
T Consensus 109 ~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~ 181 (196)
T 2d3v_A 109 PVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHIL 181 (196)
T ss_dssp --------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTEE
T ss_pred ccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCCC
Confidence 4577999999999999999 9999999998775322111111 1 258999999999999999999998653
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-15 Score=121.03 Aligned_cols=92 Identities=28% Similarity=0.498 Sum_probs=81.6
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCC---eEEEccCCCCCCeEEEEEEEe
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~N 204 (558)
.||.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.....++....++ +|.|.+++.+|+|.|+|.|.|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N 83 (99)
T 1u2h_A 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN 83 (99)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence 47888888888899999999999999999999999999999988766566654444 699999999999999999999
Q ss_pred CCceeeEEEEEEEec
Q psy10160 205 SYTSDENAVTIRVEG 219 (558)
Q Consensus 205 ~~G~~~~~~~l~V~~ 219 (558)
..|.....+.|.|.+
T Consensus 84 ~~g~~~~~~~l~V~~ 98 (99)
T 1u2h_A 84 EYGARQCEARLEVRG 98 (99)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CCCceeEEEEEEEEC
Confidence 999999999999864
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* | Back alignment and structure |
|---|
Probab=99.64 E-value=9.5e-16 Score=142.63 Aligned_cols=82 Identities=21% Similarity=0.312 Sum_probs=62.8
Q ss_pred ceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCc-----eeeEE
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYT-----SDENA 212 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G-----~~~~~ 212 (558)
...+.+|+.++|.|.+.+.|.|.+.|+|+|..+... ......+++|.|.+++.+|+|.|+|.|.|... ..+..
T Consensus 114 ~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~ 191 (218)
T 1uct_A 114 GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--HQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNA 191 (218)
T ss_dssp CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--EEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCC
T ss_pred CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc--ccCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCc
Confidence 346789999999998788888999999999876542 22233467899999999999999999998642 23567
Q ss_pred EEEEEeccC
Q psy10160 213 VTIRVEGIF 221 (558)
Q Consensus 213 ~~l~V~~~~ 221 (558)
+.|.|.+..
T Consensus 192 ~~l~V~g~~ 200 (218)
T 1uct_A 192 LELVVTDSI 200 (218)
T ss_dssp EEEEEC---
T ss_pred EEEEEecCC
Confidence 888887654
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-15 Score=156.90 Aligned_cols=205 Identities=14% Similarity=0.146 Sum_probs=118.7
Q ss_pred CCceEec------CCeEEEcCCCCCCCEEEEEEEEeCCc-----------ce---EEEEEEEEeC----CCCccCCCC--
Q psy10160 6 SENYELN------KNMLTIKRVEPERLGAYTCQAYNGLG-----------RA---VSWTVTLQAL----PSEKVADPN-- 59 (558)
Q Consensus 6 ~~r~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~g-----------~~---~s~~l~V~~~----p~~~~~~~~-- 59 (558)
.+|+.+. +.+|.|.+++.+|+|.|.|.+.+..+ .. ....|.|... |......+.
T Consensus 66 ~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~ 145 (512)
T 1zvo_C 66 RGRVTISVDTSRNQFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCR 145 (512)
T ss_pred CCceEEEecCCCCEEEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcc
Confidence 4677753 25899999999999999999998642 11 1345555532 211111121
Q ss_pred -ccccCceeEEeccCCC-CCC-cEEEEeCCcccC--CCCce--eeccccc---e--------eeceeEEeeccceeeEEe
Q psy10160 60 -AIDYGTILSSAFPSES-ASP-VVTQTTTTTTEA--TSPHV--YAALTHC---V--------PWSNVCLFGARSGYLKET 121 (558)
Q Consensus 60 -~v~~~~~~~~~~~~~~-p~p-~v~W~~~~~~~~--~~~~~--~~g~~~~---~--------~~~~~~~~~~~~~~~~~~ 121 (558)
.+....+.+.|.+.+. |.| .|+|++++.... ..... ..|.|.- + ...+.|.+.+..+.....
T Consensus 146 ~~~~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~g~ytC~v~n~~~~~~~~ 225 (512)
T 1zvo_C 146 HPKDNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWRQGEYKCVVQHTASKSKKE 225 (512)
T ss_pred cccCCCeEEEEEEEEeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcCCceEEEEEEeCCCCceEE
Confidence 2333566788888886 665 899999654321 00000 0111100 0 123455555544322111
Q ss_pred e-----------eceee----------------------------------------------------eCcEEEe-cCC
Q psy10160 122 Q-----------NGGYL----------------------------------------------------VPVKVNI-TLE 137 (558)
Q Consensus 122 ~-----------~~~~~----------------------------------------------------~p~~~~~-~~~ 137 (558)
. ...+. .+|.+.+ .+.
T Consensus 226 ~~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~ 305 (512)
T 1zvo_C 226 IFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPA 305 (512)
T ss_pred EecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCC
Confidence 1 00111 2233332 333
Q ss_pred ceEeeCCCcEEEEeEeeccCCC--eEEEEECCEEeccCC--ceEEEccC------CeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIP--QVFWYKDGQVIENDG--VHYRITES------NRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~g~~l~~~~--~~~~~~~~------~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
...+.+|+.+.|.|.+.|.+++ .|.|+|+|..+.... .......+ ++|.|..+..+|.|.|+|.|.|..+
T Consensus 306 ~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~ 385 (512)
T 1zvo_C 306 VQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSL 385 (512)
T ss_pred hHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCC
Confidence 3446689999999999996443 799999998765210 01111122 3599999999999999999999887
Q ss_pred eee
Q psy10160 208 SDE 210 (558)
Q Consensus 208 ~~~ 210 (558)
...
T Consensus 386 ~~~ 388 (512)
T 1zvo_C 386 PPQ 388 (512)
T ss_pred CCC
Confidence 653
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=141.22 Aligned_cols=168 Identities=17% Similarity=0.210 Sum_probs=117.7
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEc--cC--CeEEEccCCC-CCCeEEEEEE
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT--ES--NRLHINQANA-TDSGEYRCVA 202 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~--~~--~sL~I~~v~~-~D~G~Y~C~a 202 (558)
.||.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.....++.+. .+ .+|.|.+++. +|+|.|+|.+
T Consensus 5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~ 84 (212)
T 2yd1_A 5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVA 84 (212)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEE
T ss_pred CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEE
Confidence 58888889999999999999999999999999999999999987444455443 23 4799999999 9999999999
Q ss_pred EeCCce-eeEEEEEEEeccCCCCCC-CCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhh
Q psy10160 203 SNSYTS-DENAVTIRVEGIFIHPSC-RDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAA 280 (558)
Q Consensus 203 ~N~~G~-~~~~~~l~V~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~ 280 (558)
.|..|. .+..+.|.|...+..|.. +......... .+.. +......|.+.|.|++.+.|++++.......
T Consensus 85 ~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~------~~~~---g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~ 155 (212)
T 2yd1_A 85 ENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTR------VIEV---GHTVLMTCKAIGNPTPNIYWIKNQTKVDMSN 155 (212)
T ss_dssp ECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCE------EEET---TCCEEECCEEECSSCCEEEEEETTEECCTTS
T ss_pred EeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCce------Eeec---CCeEEEEEEeccCCCCeEEEEECCeEcccCC
Confidence 999998 788899999765432211 1000001111 1122 3334466666789999999999976654322
Q ss_pred -hhhhhcccccchhhhhhhHHHhhc
Q psy10160 281 -ADKKRRSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 281 -~~~~~~grth~q~a~~~t~g~~~~ 304 (558)
.-....+...+..+.....|.|..
T Consensus 156 ~~~~~~~~~L~i~~v~~~d~G~Y~C 180 (212)
T 2yd1_A 156 PRYSLKDGFLQIENSREEDQGKYEC 180 (212)
T ss_dssp TTEEEETTEEEECSCCGGGCEEEEE
T ss_pred CeEEccCCeEEEccCChhhCEEEEE
Confidence 212223455566666666665544
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-15 Score=143.82 Aligned_cols=131 Identities=16% Similarity=0.276 Sum_probs=96.0
Q ss_pred CceEecC------CeEEEcCCCCCCCEEEEEEEEeCCcce-EEEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCc
Q psy10160 7 ENYELNK------NMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPV 79 (558)
Q Consensus 7 ~r~~~~~------~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~ 79 (558)
+|+.+.+ ++|.|.+++.+|+|.|+|.+.|..+.. .+..+.|.+.+.
T Consensus 71 ~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~--------------------------- 123 (268)
T 3mj6_A 71 NRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE--------------------------- 123 (268)
T ss_dssp TTEEECSCTTTTBCCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECC---------------------------
T ss_pred CceEEeecCCCCEEEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEecc---------------------------
Confidence 5665533 789999999999999999999976544 344555544311
Q ss_pred EEEEeCCcccCCCCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEe---ecc
Q psy10160 80 VTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDV---DGY 156 (558)
Q Consensus 80 v~W~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~---~g~ 156 (558)
.+....+.+|+.+.|.|.+ .+.
T Consensus 124 -------------------------------------------------------~p~~~~v~~G~~v~L~C~~~~~~~~ 148 (268)
T 3mj6_A 124 -------------------------------------------------------EPRDLRVRVGDTTQMRCSIQSTEEK 148 (268)
T ss_dssp -------------------------------------------------------CCSEEEEETTCCEEECCBCEESSSS
T ss_pred -------------------------------------------------------CCCccccccCCcEEEEEEecCCCCC
Confidence 1224557789999999999 677
Q ss_pred CCCeEEEEECCEEecc-----------------CC----ceEEE-----ccCCeEEEccCCCCCCeEEEEEEEeCCceee
Q psy10160 157 PIPQVFWYKDGQVIEN-----------------DG----VHYRI-----TESNRLHINQANATDSGEYRCVASNSYTSDE 210 (558)
Q Consensus 157 P~p~i~W~~~g~~l~~-----------------~~----~~~~~-----~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~ 210 (558)
|.|.+.|++++..... .. .++.+ ..+++|.|.+++.+|+|.|+|.|.|..|...
T Consensus 149 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~ 228 (268)
T 3mj6_A 149 RVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESR 228 (268)
T ss_dssp CCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred CccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEE
Confidence 9999999994321100 00 12222 2356899999999999999999999999999
Q ss_pred EEEEEEEec
Q psy10160 211 NAVTIRVEG 219 (558)
Q Consensus 211 ~~~~l~V~~ 219 (558)
..+.|.|..
T Consensus 229 ~~~~l~V~~ 237 (268)
T 3mj6_A 229 KTIVLHVVQ 237 (268)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999853
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=7.2e-17 Score=166.87 Aligned_cols=198 Identities=16% Similarity=0.172 Sum_probs=119.1
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEeC-CCCccC--CCCccccC-ceeEEeccCCCC--CCcEEEEeC--
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQAL-PSEKVA--DPNAIDYG-TILSSAFPSESA--SPVVTQTTT-- 85 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~~-p~~~~~--~~~~v~~~-~~~~~~~~~~~p--~p~v~W~~~-- 85 (558)
+.|.|.+++.+|+|.|+|.|.|..+.. ...+.+... +..... ....+..| .+.+.|...+.| .|.+.|+++
T Consensus 181 ~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~ 259 (438)
T 1qgc_4 181 STLTLTKDEYERHNSYTCEATHKTSTS-PIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTP 259 (438)
T ss_dssp EEEEEEHHHHHTCCEEEEEEEETTCSS-CEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEET
T ss_pred EEEEEeCcccCCCCeEEEEEEecccCC-ceecccccccceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCC
Confidence 479999999999999999999988764 223333321 111111 12234444 566899998888 689999996
Q ss_pred CcccC-----------------CCCceeec-----ccccee---------eceeEEeeccce---------eeEEeeece
Q psy10160 86 TTTEA-----------------TSPHVYAA-----LTHCVP---------WSNVCLFGARSG---------YLKETQNGG 125 (558)
Q Consensus 86 ~~~~~-----------------~~~~~~~g-----~~~~~~---------~~~~~~~~~~~~---------~~~~~~~~~ 125 (558)
+..+. ...++... ....+. -.|.|.+.|..+ .........
T Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~ 339 (438)
T 1qgc_4 260 EKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAA 339 (438)
T ss_dssp TTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSS
T ss_pred CCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecC
Confidence 32211 01111000 000111 124555554211 111111111
Q ss_pred eeeCcEEEecCCceEeeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccC--C-----ceEEEccCCeEEEccCCCCCCe
Q psy10160 126 YLVPVKVNITLETQVFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIEND--G-----VHYRITESNRLHINQANATDSG 196 (558)
Q Consensus 126 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~--~-----~~~~~~~~~sL~I~~v~~~D~G 196 (558)
...+|.+...+....+.+|+.+.|.|.+.|. |.| .+.|+++|..+... . ..|.. .+.|.|.++..+| |
T Consensus 340 ~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~d-g 416 (438)
T 1qgc_4 340 KTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTL--SSSVTVPSSTWPS-E 416 (438)
T ss_dssp CCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEETTEEEE--EEEEEEEEEHHHH-S
T ss_pred CCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCccccCCcEEE--EEEEEEehhhcCC-c
Confidence 1234554444334446789999999999997 888 89999998776421 1 11111 1258999999889 9
Q ss_pred EEEEEEEeCCceeeEEEEE
Q psy10160 197 EYRCVASNSYTSDENAVTI 215 (558)
Q Consensus 197 ~Y~C~a~N~~G~~~~~~~l 215 (558)
.|+|.|.|..|.......+
T Consensus 417 ~Y~C~a~n~~g~~~~~~~i 435 (438)
T 1qgc_4 417 TVTCNVAHPASSTKVDKKI 435 (438)
T ss_dssp CCEEEEEEGGGTEEEEEEC
T ss_pred eEEEEEEeCCCCcceeeec
Confidence 9999999999987655443
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.8e-15 Score=136.52 Aligned_cols=73 Identities=14% Similarity=0.276 Sum_probs=56.6
Q ss_pred CCCcEEEEeEee-ccCCCeEEEEECCEEeccCCceEEEccC-CeE---EEccCCCCCCeEEEEEEEeCCceeeEEEEE
Q psy10160 143 VGSDISIPCDVD-GYPIPQVFWYKDGQVIENDGVHYRITES-NRL---HINQANATDSGEYRCVASNSYTSDENAVTI 215 (558)
Q Consensus 143 ~G~~v~L~C~~~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~-~sL---~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 215 (558)
.|+.+.|.|.+. |+|.|.|.|+++|..+.....++....+ +.+ .+..+..+|.|.|+|.|.|..|..+..+.+
T Consensus 120 ~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~ 197 (201)
T 1dr9_A 120 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW 197 (201)
T ss_dssp STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred CCCeEEEEEecCCccCCCEEEEEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence 488999999995 9999999999999988765444444433 322 234566789999999999999998876654
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=151.06 Aligned_cols=203 Identities=13% Similarity=0.128 Sum_probs=130.2
Q ss_pred cccC-ceeEEeccC-------CCCCCcEEEEeCCccc--CCC--Cceeeccccce---------eeceeEEeeccceeeE
Q psy10160 61 IDYG-TILSSAFPS-------ESASPVVTQTTTTTTE--ATS--PHVYAALTHCV---------PWSNVCLFGARSGYLK 119 (558)
Q Consensus 61 v~~~-~~~~~~~~~-------~~p~p~v~W~~~~~~~--~~~--~~~~~g~~~~~---------~~~~~~~~~~~~~~~~ 119 (558)
+.+| .+.+.|... +.|.|.+.|++++..+ ... .+.. .....+ .-.|.|.+.+..+...
T Consensus 30 v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~~~n~~g~~~ 108 (339)
T 3o4o_C 30 RLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMW-AQDGALWLLPALQEDSGTYVCTTRNASYCDK 108 (339)
T ss_dssp EETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEE-EETTEEEESSBCTTCCEEEECCEEETTEEEE
T ss_pred EECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEE-eeCCeEEECCCCcccCEEEEEEEECCcceEE
Confidence 3444 566888887 8899999999998763 222 1111 000111 1133455555544444
Q ss_pred EeeeceeeeCcEEE--ecCCceEeeCCCcEEEEeE-----eeccCCCeEEEEECCEEeccCCceEEEccC-CeEEEccCC
Q psy10160 120 ETQNGGYLVPVKVN--ITLETQVFGVGSDISIPCD-----VDGYPIPQVFWYKDGQVIENDGVHYRITES-NRLHINQAN 191 (558)
Q Consensus 120 ~~~~~~~~~p~~~~--~~~~~~~v~~G~~v~L~C~-----~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~-~sL~I~~v~ 191 (558)
....+.+..++... .......+.+|+.+.|.|. +.|.|.|.+.|+|++..+.....++....+ ++|.|.+++
T Consensus 109 ~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~ 188 (339)
T 3o4o_C 109 MSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVA 188 (339)
T ss_dssp EEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEECTTSSEEEESSCC
T ss_pred EEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEcCCcceEEEcccC
Confidence 44333343332211 1222346789999999999 899999999999999998876556666554 589999999
Q ss_pred CCCCeEEEEEEEeCCc----eeeEEEEEEEeccC--CCCCCCCCCccccceeEEeceeeecccceeEEEEeccC---CCC
Q psy10160 192 ATDSGEYRCVASNSYT----SDENAVTIRVEGIF--IHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTR---AGQ 262 (558)
Q Consensus 192 ~~D~G~Y~C~a~N~~G----~~~~~~~l~V~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~---~g~ 262 (558)
.+|+|.|+|.|.|..| ..+..+.|.|...+ .+|.+...+ .. . .+.. +......|.+ .|.
T Consensus 189 ~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~--~~-~------~v~~---G~~v~L~C~~~~~~g~ 256 (339)
T 3o4o_C 189 LEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPL--KT-I------SASL---GSRLTIPCKVFLGTGT 256 (339)
T ss_dssp GGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCS--CC-C------CCCC---CSCCCCCCCEEESSSC
T ss_pred HhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCC--ce-e------Eecc---CCCEEEEEEEECCCCC
Confidence 9999999999999987 45677888887543 123322221 11 1 1122 2223356666 788
Q ss_pred C-CCcccccchhhhh
Q psy10160 263 L-PSYGPHIKRAVEA 276 (558)
Q Consensus 263 ~-~~~~~w~~~~l~~ 276 (558)
| ++.+.|++++...
T Consensus 257 P~~~~v~W~~~g~~~ 271 (339)
T 3o4o_C 257 PLTTMLWWTANDTHI 271 (339)
T ss_dssp CSSCEEEEESSSSCS
T ss_pred CCCceEEEEECCeec
Confidence 8 8899999987553
|
| >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.8e-16 Score=147.65 Aligned_cols=184 Identities=15% Similarity=0.159 Sum_probs=88.8
Q ss_pred CCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCCCc--ccc-CceeEEeccCCCC-----CCcEEEEeCCcc--c
Q psy10160 21 VEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPNA--IDY-GTILSSAFPSESA-----SPVVTQTTTTTT--E 89 (558)
Q Consensus 21 v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~~~--v~~-~~~~~~~~~~~~p-----~p~v~W~~~~~~--~ 89 (558)
++.+|+|.|+|.|. |... +..+.+.. +......|.. +.. ..+.+.|...+.| .|.+.|+++... .
T Consensus 11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~~-~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~ 86 (254)
T 2c1o_A 11 VRPGTSVKLSCKAS---GYSFTNYWMNWLR-ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSP 86 (254)
T ss_dssp -------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCC
T ss_pred ecCCccEEEEEcCc---hhhhhhhhhheee-ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCc
Confidence 78999999999998 4332 22222222 2233332332 334 4667899988887 489999985321 1
Q ss_pred ----------C--CCCceeec---cccceee---------ceeEEeeccceee-----EEeeeceeeeCcEEEecCCceE
Q psy10160 90 ----------A--TSPHVYAA---LTHCVPW---------SNVCLFGARSGYL-----KETQNGGYLVPVKVNITLETQV 140 (558)
Q Consensus 90 ----------~--~~~~~~~g---~~~~~~~---------~~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~ 140 (558)
. ...++... ....+.+ .|.|.+.+..+.. .... .....+|.+...+....
T Consensus 87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V-~~~~~~P~v~~~~~~~~ 165 (254)
T 2c1o_A 87 KRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLEL-KRADAAPTVSIFPPSSE 165 (254)
T ss_dssp EEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEE-CCCCBCCEEEEECCCHH
T ss_pred eEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEE-CCCCCCCeeEeecCChh
Confidence 0 01111100 0001111 2345554442211 1111 11113566665444433
Q ss_pred eeCCCcEEEEeEeecc-CC-CeEEEEECCEEeccC-CceEEE--cc------CCeEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 141 FGVGSDISIPCDVDGY-PI-PQVFWYKDGQVIEND-GVHYRI--TE------SNRLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~-P~-p~i~W~~~g~~l~~~-~~~~~~--~~------~~sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
...|+.+.|.|.+.|. |. +.+.|+|+|..+... ...... .. .+.|.|.++..+|+|.|+|.|.|.....
T Consensus 166 ~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~ 245 (254)
T 2c1o_A 166 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 245 (254)
T ss_dssp HHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred hccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence 4468899999999985 44 359999999887654 111111 11 2369999999999999999999987654
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=136.03 Aligned_cols=75 Identities=21% Similarity=0.311 Sum_probs=61.7
Q ss_pred eEeeCCCcEEEEeEeeccCCC-eEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCce-eeEEEEEE
Q psy10160 139 QVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTS-DENAVTIR 216 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~ 216 (558)
..+.+|+.+.|.|.+.+.|++ .+.|+|+|..+... ..++.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.
T Consensus 98 ~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~ 171 (175)
T 1fnl_A 98 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF------HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNIT 171 (175)
T ss_dssp SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE------EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred ceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC------CCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEE
Confidence 456789999999999988665 89999999887431 24568999999999999999999997664 45677888
Q ss_pred Eec
Q psy10160 217 VEG 219 (558)
Q Consensus 217 V~~ 219 (558)
|.+
T Consensus 172 V~~ 174 (175)
T 1fnl_A 172 ITQ 174 (175)
T ss_dssp EEC
T ss_pred EeC
Confidence 864
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.62 E-value=8.6e-16 Score=139.39 Aligned_cols=77 Identities=16% Similarity=0.265 Sum_probs=58.2
Q ss_pred eEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCc---eeeEEEEE
Q psy10160 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYT---SDENAVTI 215 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G---~~~~~~~l 215 (558)
..+.+|+.++|.|.+.+ |.|.+.|+|+|..+... ......+++|.|.+++.+|+|.|+|.|.|... ..+..+.|
T Consensus 108 ~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~--~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l 184 (188)
T 1oll_A 108 PEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQ--RGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKL 184 (188)
T ss_dssp SEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEE--EEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEE
T ss_pred CccccCCEEEEEEEcCC-CCCEEEEEECCcccccc--ccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEE
Confidence 45789999999999877 55789999998766531 11223456899999999999999999999752 23455666
Q ss_pred EEe
Q psy10160 216 RVE 218 (558)
Q Consensus 216 ~V~ 218 (558)
.|.
T Consensus 185 ~V~ 187 (188)
T 1oll_A 185 LVT 187 (188)
T ss_dssp EEE
T ss_pred Eec
Confidence 664
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-15 Score=125.08 Aligned_cols=94 Identities=17% Similarity=0.321 Sum_probs=82.8
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCC----eEEEccCCCCCCeEEEEEEE
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN----RLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~----sL~I~~v~~~D~G~Y~C~a~ 203 (558)
.+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.....++.+..++ +|.|.+++.+|+|.|+|.|.
T Consensus 14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 93 (116)
T 2kkq_A 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAV 93 (116)
T ss_dssp BCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEE
T ss_pred CCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEE
Confidence 57788888889999999999999999999999999999999987654466554432 79999999999999999999
Q ss_pred eCCceeeEEEEEEEeccC
Q psy10160 204 NSYTSDENAVTIRVEGIF 221 (558)
Q Consensus 204 N~~G~~~~~~~l~V~~~~ 221 (558)
|..|.....+.|.|..++
T Consensus 94 N~~G~~~~~~~l~V~~~p 111 (116)
T 2kkq_A 94 NEAGVTTCNTRLDVTARP 111 (116)
T ss_dssp ETTEEEEEEEEEEEECCS
T ss_pred cCCCeEEEEEEEEEeCCC
Confidence 999999999999998665
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-15 Score=139.34 Aligned_cols=81 Identities=19% Similarity=0.347 Sum_probs=58.4
Q ss_pred EeeCCCcEEEEeEeeccCCCeEEEEEC-CEEeccCCceEEE--ccCCeEE---EccCCCCCCeEEEEEEEeCCceeeEEE
Q psy10160 140 VFGVGSDISIPCDVDGYPIPQVFWYKD-GQVIENDGVHYRI--TESNRLH---INQANATDSGEYRCVASNSYTSDENAV 213 (558)
Q Consensus 140 ~v~~G~~v~L~C~~~g~P~p~i~W~~~-g~~l~~~~~~~~~--~~~~sL~---I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 213 (558)
.+.+|+.+.|.|.+.|+|.|.+.|+++ +..+.... .... ..++.+. +..+..+|.|.|+|.|.|..|.....+
T Consensus 127 ~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~ 205 (222)
T 3sbw_C 127 VDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKT-TTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTA 205 (222)
T ss_dssp EETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEE-EEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEE
T ss_pred eecCCCcEEEEEEecCCCCCeEEEEECCCceecCcc-ceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEE
Confidence 356799999999999999999999998 55554321 2211 2223222 224567999999999999999999999
Q ss_pred EEEEeccC
Q psy10160 214 TIRVEGIF 221 (558)
Q Consensus 214 ~l~V~~~~ 221 (558)
.|.|.+.+
T Consensus 206 ~l~v~~~p 213 (222)
T 3sbw_C 206 ELVIPELP 213 (222)
T ss_dssp EEECCCC-
T ss_pred EEEecCCc
Confidence 99986443
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-15 Score=145.17 Aligned_cols=192 Identities=11% Similarity=0.031 Sum_probs=125.5
Q ss_pred CCccccC-ceeEEeccCC-CCCC--cEEEEeCCcccCCCCceeecc-----------ccceeeceeEEeeccceeeEEee
Q psy10160 58 PNAIDYG-TILSSAFPSE-SASP--VVTQTTTTTTEATSPHVYAAL-----------THCVPWSNVCLFGARSGYLKETQ 122 (558)
Q Consensus 58 ~~~v~~~-~~~~~~~~~~-~p~p--~v~W~~~~~~~~~~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~~~~~ 122 (558)
+..+.+| .+.+.|...+ .|.| .+.|++++..+........+. ...-...+.|.+.+..+......
T Consensus 12 ~~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~ 91 (265)
T 2oz4_A 12 PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQ 91 (265)
T ss_dssp CSEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCEEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEEE
T ss_pred CceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCceEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcEEEE
Confidence 4455566 4558888888 7777 999999987765421111000 00011136777777766655555
Q ss_pred eceeee--CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEE
Q psy10160 123 NGGYLV--PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRC 200 (558)
Q Consensus 123 ~~~~~~--p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C 200 (558)
.+.+.. +|.+. +....+.+|+.+.|.|.+. |.|.+.| +|..+...+ ..+.|.|..+..+|.|.|+|
T Consensus 92 ~l~V~~~p~p~~~--~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~------~~~~l~i~~~~~~~~g~Y~C 159 (265)
T 2oz4_A 92 TVTIYSFPAPNVI--LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG------PRAQLLLKATPEDNGRSFSC 159 (265)
T ss_dssp EEEEECCCCCEEE--ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS------SEECCEEECCGGGTTEEEEE
T ss_pred EEEEeCCCCceee--cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC------CcEEEEEccccccCCceEEE
Confidence 555543 33333 4456688999999999998 9999999 777764332 22468899999999999999
Q ss_pred EEEeCC-ceee---EEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhh
Q psy10160 201 VASNSY-TSDE---NAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAV 274 (558)
Q Consensus 201 ~a~N~~-G~~~---~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l 274 (558)
.|.|.. |... ..+.|.|..++.. ..... .....+.. +......|.+.|.|+|.+.|++++.
T Consensus 160 ~a~n~~~g~~~~~s~~~~l~V~~~p~~---~~~~~-p~~~~v~~---------g~~~~l~C~~~g~P~p~i~W~~~~~ 224 (265)
T 2oz4_A 160 SATLEVAGQLIHKNQTRELRVLYGPRL---DERDC-PGNWTWPE---------NSQQTPMCQAWGNPLPELKCLKDGT 224 (265)
T ss_dssp EEEEECSSSEEEEEEEEEEEEEEEEEC---CGGGS-CSEEEEET---------TCEECCCCCCEEESCCEEEEEETTT
T ss_pred EEEcCCCCCcccccccEEEEEEeCCcc---ccccC-CCccEEcC---------CCeEEEEeECccCCCCeEEEEECCc
Confidence 998654 7665 7788888765432 11111 11111221 4445577888899999999999976
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.7e-15 Score=140.15 Aligned_cols=211 Identities=12% Similarity=0.104 Sum_probs=134.2
Q ss_pred cccC-ceeEEeccCCCCCC-cEEEEeCCcccCCCCce---------eeccccceeeceeEEeeccceeeEEeeeceeeeC
Q psy10160 61 IDYG-TILSSAFPSESASP-VVTQTTTTTTEATSPHV---------YAALTHCVPWSNVCLFGARSGYLKETQNGGYLVP 129 (558)
Q Consensus 61 v~~~-~~~~~~~~~~~p~p-~v~W~~~~~~~~~~~~~---------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 129 (558)
+..| .+.+.|...+.|.| .+.|++++..+...... ..|.|.|.+.+ ..... .....+..+
T Consensus 13 v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-------~~~s~--~~~l~v~~~ 83 (262)
T 3rjd_A 13 VFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASVNDSGEYRCQRGL-------SGRSD--PIQLEIHRG 83 (262)
T ss_dssp EETTCCEEEEEECSSCCCTTCEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEESS-------SCCCC--CEEEEEECS
T ss_pred eeCCCeEEEEEECCCCCCCceEEEEECCEEeeccCCeEEEecCCcccCeEEEEEEec-------CCccc--cEEEEEecc
Confidence 4444 56689999888888 99999998877544322 25666666543 22111 111122233
Q ss_pred cEEEecCCceEeeCCCcEEEEeEe-eccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
+ +...+....+.+|+.+.|.|.+ .+.|.|.+.|++++..+... ..++.|.|.+++.+|+|.|+|.+.|..+.
T Consensus 84 ~-~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~------~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~ 156 (262)
T 3rjd_A 84 W-LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF------HWNSNLTILKTNISHNGTYHCSGMGKHRY 156 (262)
T ss_dssp S-EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE------EECCCEEESSCCGGGCEEEEEEEESSSEE
T ss_pred c-eEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc------CCCCeEEEEECChhhCEEEEEEEeCCCCc
Confidence 3 3344556678899999999999 78888999999999887532 23568999999999999999999999988
Q ss_pred eeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCC-Cc----ccccchhhhhhhhhhhh
Q psy10160 209 DENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLP-SY----GPHIKRAVEAEAAAADK 283 (558)
Q Consensus 209 ~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~-~~----~~w~~~~l~~~~~~~~~ 283 (558)
.+..+.|.|.+++.+|.+...+ . .. +.. +......|.+.+.|+ |. +.|++++......
T Consensus 157 ~~~~~~l~V~~~~~~p~~~~~~---~-~~------~~~---g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~---- 219 (262)
T 3rjd_A 157 TSAGISVTVKELFPAPVLNASV---T-SP------LLE---GNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR---- 219 (262)
T ss_dssp EEECEEEEEECSSCCCEEEESS---C-SS------EET---TCCEEEEEECCCCCC-----EEEEEEETTEEEEEE----
T ss_pred cccceEEEeccCCCCCeEeecC---c-ee------ecC---CCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc----
Confidence 8888999997654333332221 1 11 122 333445666767775 55 4666665433211
Q ss_pred hhcccccchhhhhhhHHHhhc
Q psy10160 284 KRRSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 284 ~~~grth~q~a~~~t~g~~~~ 304 (558)
...+..++..+.....|.|..
T Consensus 220 ~~~~~L~i~~v~~~d~G~Y~C 240 (262)
T 3rjd_A 220 NTSSEYQILTARREDSGLYWC 240 (262)
T ss_dssp ESCCEEEESSCCGGGCEEEEE
T ss_pred CCCceEEEEEechhhCeEEEE
Confidence 112234455555565665544
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.4e-15 Score=118.30 Aligned_cols=92 Identities=26% Similarity=0.335 Sum_probs=79.0
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEE---ccCCeEEEccCCCCCCeEEEEEEEe
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI---TESNRLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~---~~~~sL~I~~v~~~D~G~Y~C~a~N 204 (558)
.||.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+......... ....+|.|.+++.+|+|.|+|.|.|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N 83 (99)
T 1g1c_A 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN 83 (99)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence 4778888888999999999999999999999999999999998765533222 1223799999999999999999999
Q ss_pred CCceeeEEEEEEEec
Q psy10160 205 SYTSDENAVTIRVEG 219 (558)
Q Consensus 205 ~~G~~~~~~~l~V~~ 219 (558)
..|.....+.|.|.+
T Consensus 84 ~~g~~~~~~~l~V~~ 98 (99)
T 1g1c_A 84 IAGETSSHAFLLVQA 98 (99)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CCCcEEEEEEEEEec
Confidence 999999999999864
|
| >4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=142.13 Aligned_cols=82 Identities=20% Similarity=0.417 Sum_probs=61.4
Q ss_pred EeeCCCcEEEEeEe-eccCCCeEEEEE-CCEEeccCCce-EEEccCC---eEEEccCCCCCCeEEEEEEEeCCceeeEEE
Q psy10160 140 VFGVGSDISIPCDV-DGYPIPQVFWYK-DGQVIENDGVH-YRITESN---RLHINQANATDSGEYRCVASNSYTSDENAV 213 (558)
Q Consensus 140 ~v~~G~~v~L~C~~-~g~P~p~i~W~~-~g~~l~~~~~~-~~~~~~~---sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 213 (558)
.+.+|+.+.|.|.+ .|.|.|.+.|++ ++..+...... .....++ .|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus 121 ~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 200 (222)
T 4i0k_A 121 DLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHG 200 (222)
T ss_dssp ---CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEE
T ss_pred eecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEE
Confidence 56789999999999 899999999999 45444332111 1112233 388999999999999999999999999999
Q ss_pred EEEEeccC
Q psy10160 214 TIRVEGIF 221 (558)
Q Consensus 214 ~l~V~~~~ 221 (558)
.|.|.+++
T Consensus 201 ~l~V~~~p 208 (222)
T 4i0k_A 201 SVTITGQP 208 (222)
T ss_dssp EEECCC--
T ss_pred EEEEeCCc
Confidence 99997655
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-15 Score=119.76 Aligned_cols=88 Identities=18% Similarity=0.259 Sum_probs=74.7
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECC--EEeccCCceEEE-ccCCeEEEccCCCCCCeEEEEEEEeC
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG--QVIENDGVHYRI-TESNRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g--~~l~~~~~~~~~-~~~~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
||.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++ ..+.... .+.. ...++|.|.+++.+|+|.|+|.|.|.
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 80 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPEL-LVDAKSSTTSIFFPSAKRADSGNYKLKVKNE 80 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTS-EEEEETTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcE-EEEecCCEEEEEECCCChhcCEEEEEEEEcC
Confidence 567777778888999999999999999999999999999 8776542 2222 22357999999999999999999999
Q ss_pred CceeeEEEEEEE
Q psy10160 206 YTSDENAVTIRV 217 (558)
Q Consensus 206 ~G~~~~~~~l~V 217 (558)
.|..+..+.|.|
T Consensus 81 ~G~~~~~~~l~V 92 (93)
T 1wit_A 81 LGEDEAIFEVIV 92 (93)
T ss_dssp TEEEEEEEEEEE
T ss_pred CCeEEEEEEEEE
Confidence 999999988887
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-16 Score=155.49 Aligned_cols=231 Identities=11% Similarity=0.041 Sum_probs=138.9
Q ss_pred ccC-ceeEEeccCCC-CCCcEEEEeCCcccCCCCceeec-cccce---------eeceeEEeeccceeeEEeeeceeeeC
Q psy10160 62 DYG-TILSSAFPSES-ASPVVTQTTTTTTEATSPHVYAA-LTHCV---------PWSNVCLFGARSGYLKETQNGGYLVP 129 (558)
Q Consensus 62 ~~~-~~~~~~~~~~~-p~p~v~W~~~~~~~~~~~~~~~g-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p 129 (558)
.+| .+.+.|...+. |.|.+.|++++..+....+.... ....+ .-.|.|.+.+..+.........+..+
T Consensus 19 ~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~ 98 (317)
T 2y25_A 19 TGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAF 98 (317)
T ss_dssp ETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSSCEEEEEECCSTHHH
T ss_pred CCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCCCcEEEEEEEEEecC
Confidence 344 55688887776 78999999998777654432110 00011 11345666665554444444333333
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeec----------cCCCeEEEEECCEEeccCCceEEEccCC---eEEEccCCCCCCe
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDG----------YPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSG 196 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g----------~P~p~i~W~~~g~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G 196 (558)
+.+...+....+.+|+.+.|.|.+.| .|.|.+.|++++..+..+. ++.....+ +|.|.+++.+|+|
T Consensus 99 ~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G 177 (317)
T 2y25_A 99 KELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD-RVKTGVTGEQIWLQINEPTPNDKG 177 (317)
T ss_dssp HHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCS-SEEEEECSSEEEEEEESCCGGGCE
T ss_pred ccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCC-CeEEeccCCEEEEEECcCCcccCe
Confidence 33333344455678888888888887 7999999999999887654 44443332 4999999999999
Q ss_pred EEEEEEEeCCceeeEEEEEEEecc-----------------CCCCCCCCCCccccceeEEeceeeecccceeEEEEeccC
Q psy10160 197 EYRCVASNSYTSDENAVTIRVEGI-----------------FIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTR 259 (558)
Q Consensus 197 ~Y~C~a~N~~G~~~~~~~l~V~~~-----------------~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~ 259 (558)
.|+|.|.|..|....++.+.|... ...|.+... .... ..+..|....+. |.+
T Consensus 178 ~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~------~~v~~g~~~~l~---C~~ 246 (317)
T 2y25_A 178 KYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGG--LPDV------VTIQEGKALNLT---CNV 246 (317)
T ss_dssp EEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEB--CCSE------EEEETTSBBCEE---EEE
T ss_pred eEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCccccc--CCcc------EEEEcCCEEEEE---EEE
Confidence 999999999999988888876421 001111100 0111 122333344444 445
Q ss_pred CCCCCCcccccchhhhhhhhhh-hhhhc-c---cccchhhhhhhHHHhhc
Q psy10160 260 AGQLPSYGPHIKRAVEAEAAAA-DKKRR-S---RRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 260 ~g~~~~~~~w~~~~l~~~~~~~-~~~~~-g---rth~q~a~~~t~g~~~~ 304 (558)
.|.|+|.+.|++++........ .+... + ...+..+.....|.|..
T Consensus 247 ~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 296 (317)
T 2y25_A 247 WGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGL 296 (317)
T ss_dssp ECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEE
T ss_pred ecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEE
Confidence 5899999999999765543321 11111 2 44555555555565543
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=138.20 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=91.7
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEEeCCcccCC
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQTTTTTTEAT 91 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~~~~~~~~~ 91 (558)
+++|.|.+++.+|+|.|+|.|.|..|... .+.|.|..+|...
T Consensus 53 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~------------------------------------- 95 (202)
T 1vca_A 53 TSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDP------------------------------------- 95 (202)
T ss_dssp EEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEEBCCSCC-------------------------------------
T ss_pred ccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEEeCCCCC-------------------------------------
Confidence 45799999999999999999999887643 4455555443221
Q ss_pred CCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCC---CeEEEEECCE
Q psy10160 92 SPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPI---PQVFWYKDGQ 168 (558)
Q Consensus 92 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~---p~i~W~~~g~ 168 (558)
.+.+. ..+.+|+.++|.|.+.|.|+ +.|.|+|++.
T Consensus 96 -----------------------------------------~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~ 133 (202)
T 1vca_A 96 -----------------------------------------EIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDH 133 (202)
T ss_dssp -----------------------------------------EEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTE
T ss_pred -----------------------------------------EeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCe
Confidence 01111 34679999999999998644 3699999998
Q ss_pred EeccCCceEE------EccCCeEEEccCCCCCCeEEEEEEEeCCce-------eeEEEEEEEeccC
Q psy10160 169 VIENDGVHYR------ITESNRLHINQANATDSGEYRCVASNSYTS-------DENAVTIRVEGIF 221 (558)
Q Consensus 169 ~l~~~~~~~~------~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~-------~~~~~~l~V~~~~ 221 (558)
.+........ ......|.|..+..+|.|.|+|.|.|..|. .+.++.|+|..+|
T Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P 199 (202)
T 1vca_A 134 LMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP 199 (202)
T ss_dssp EEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC
T ss_pred ECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCC
Confidence 8753210000 011234678888888999999999999876 3567888886554
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.8e-15 Score=119.52 Aligned_cols=93 Identities=22% Similarity=0.389 Sum_probs=81.3
Q ss_pred eeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccC---CeEEEccCCCCCCeEEEEEEE
Q psy10160 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES---NRLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 127 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~---~sL~I~~v~~~D~G~Y~C~a~ 203 (558)
..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.... ++.+..+ .+|.|.+++.+|+|.|+|.|.
T Consensus 6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 84 (103)
T 3qp3_A 6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESS-KIHYTNTSGVLTLEILDCHTDDSGTYRAVCT 84 (103)
T ss_dssp CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCS-SEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred CCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCC-CEEEEECCCEEEEEEcCCCcccCEEEEEEEE
Confidence 357888888889999999999999999999999999999999987654 4544432 369999999999999999999
Q ss_pred eCCceeeEEEEEEEecc
Q psy10160 204 NSYTSDENAVTIRVEGI 220 (558)
Q Consensus 204 N~~G~~~~~~~l~V~~~ 220 (558)
|..|..+..+.|.|.+.
T Consensus 85 N~~G~~~~~~~l~V~~~ 101 (103)
T 3qp3_A 85 NYKGEASDYATLDVTGG 101 (103)
T ss_dssp ETTEEEEEEEEEEEECC
T ss_pred eCCCcEEEEEEEEEECC
Confidence 99999999999999754
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.6e-16 Score=139.22 Aligned_cols=119 Identities=21% Similarity=0.238 Sum_probs=84.7
Q ss_pred ecCCeEEEcCCCCCCCEEEEEEEEeCCcce-EEEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEEeCCccc
Q psy10160 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQTTTTTTE 89 (558)
Q Consensus 11 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~~~~~~~ 89 (558)
..+++|.|.+++.+|+|.|+|.+.|..|.. .+..+.|.+....
T Consensus 49 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~------------------------------------ 92 (184)
T 2gi7_A 49 QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVF------------------------------------ 92 (184)
T ss_dssp ESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSS------------------------------------
T ss_pred CcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcC------------------------------------
Confidence 456799999999999999999999987642 2222333321100
Q ss_pred CCCCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEE
Q psy10160 90 ATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQV 169 (558)
Q Consensus 90 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~ 169 (558)
.+|.+...+ ...+.+|+.+.|.|.+.+.| |.+.|+|+|..
T Consensus 93 --------------------------------------~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~ 132 (184)
T 2gi7_A 93 --------------------------------------AKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDP 132 (184)
T ss_dssp --------------------------------------CCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCC
T ss_pred --------------------------------------CCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCc
Confidence 122233333 34567899999999988765 69999999987
Q ss_pred eccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 170 IENDGVHYRITESNRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 170 l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
+.... . ....++.|.|.+++.+|+|.|+|.|.|..+
T Consensus 133 ~~~~~-~-~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 168 (184)
T 2gi7_A 133 APYKN-P-ERWYRASFPIITVTAAHSGTYRCYSFSSRD 168 (184)
T ss_dssp TTSCC-C-CEEEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred Cccee-c-CCCceEEEEEccCCccCCeEEEEEEEeCCC
Confidence 76422 1 122345799999999999999999999754
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.5e-15 Score=149.17 Aligned_cols=203 Identities=16% Similarity=0.210 Sum_probs=117.2
Q ss_pred CCceEec------CCeEEEcCCCCCCCEEEEEEEEeCCcce-EEEEEEEEeC----CCCccCCC-Ccccc-CceeEEecc
Q psy10160 6 SENYELN------KNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQAL----PSEKVADP-NAIDY-GTILSSAFP 72 (558)
Q Consensus 6 ~~r~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~s~~l~V~~~----p~~~~~~~-~~v~~-~~~~~~~~~ 72 (558)
.+|+.+. ..+|.|.+++.+|+|.|+|.+.|..+.. ....|.|... |......+ ..+.. ..+.+.|.+
T Consensus 65 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~ 144 (344)
T 1za6_B 65 KGKATLTADTSASTAYVELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLV 144 (344)
T ss_dssp BTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEE
T ss_pred CCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEE
Confidence 4577653 2489999999999999999999955332 2445666531 22222222 22334 456688988
Q ss_pred CCC-CC-CcEEEEeCCcccCCC--Cce--eecccc---cee--------eceeEEeeccceeeEEee--e----------
Q psy10160 73 SES-AS-PVVTQTTTTTTEATS--PHV--YAALTH---CVP--------WSNVCLFGARSGYLKETQ--N---------- 123 (558)
Q Consensus 73 ~~~-p~-p~v~W~~~~~~~~~~--~~~--~~g~~~---~~~--------~~~~~~~~~~~~~~~~~~--~---------- 123 (558)
.+. |. |.+.|++++..+... ... ..+.|. .+. -.|.|.+.+..+...... .
T Consensus 145 ~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~dG~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~ 224 (344)
T 1za6_B 145 KDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTC 224 (344)
T ss_dssp EEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHHBCEEEEEEEGGGTEEEEEEECCCCC------
T ss_pred eeEECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCCCcEEEEEEeCCCCccceEeeccccccccccc
Confidence 886 64 799999988653100 000 001000 000 245566665544321111 0
Q ss_pred ------------ceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCC--CeEEEEECCEEeccCC-ceEEEccCC-----
Q psy10160 124 ------------GGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPI--PQVFWYKDGQVIENDG-VHYRITESN----- 183 (558)
Q Consensus 124 ------------~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~--p~i~W~~~g~~l~~~~-~~~~~~~~~----- 183 (558)
.....||.+...+......+|+.+.|.|.+.|.|+ +.+.|+|+|..+.... .++....++
T Consensus 225 ~~~~~~~~l~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~ 304 (344)
T 1za6_B 225 PPCGGGSSGGGSGGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLY 304 (344)
T ss_dssp --------------CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEE
T ss_pred CCCCCCccccccCCCCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEE
Confidence 01234566555433322335777999999999633 5799999998775321 111223333
Q ss_pred -eEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 184 -RLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 184 -sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
.|.|.....+|+|.|+|.|.|....
T Consensus 305 s~l~i~~~~~~~~g~YtC~a~~~~l~ 330 (344)
T 1za6_B 305 SKLTVDKSRWQQGNVFSCSVMHEALH 330 (344)
T ss_dssp EEEEECHHHHHTTCEEEEEEECTTST
T ss_pred EEEEEChHHccCCCeEEEEEEcCCCC
Confidence 3566666667899999999997644
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-15 Score=125.36 Aligned_cols=94 Identities=24% Similarity=0.443 Sum_probs=84.8
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
.||.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.....++....+++|.|.+++.+|+|.|+|.|.|..|
T Consensus 7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 86 (118)
T 2eo9_A 7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSG 86 (118)
T ss_dssp CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECSSC
T ss_pred CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCCC
Confidence 47778788888999999999999999999999999999999887655677777788999999999999999999999999
Q ss_pred eeeEEEEEEEeccC
Q psy10160 208 SDENAVTIRVEGIF 221 (558)
Q Consensus 208 ~~~~~~~l~V~~~~ 221 (558)
.....+.|.|.+++
T Consensus 87 ~~~~~~~l~V~~~~ 100 (118)
T 2eo9_A 87 EATWSAYIEVQEFG 100 (118)
T ss_dssp EEEEECCEEEECCS
T ss_pred cEEEEEEEEEEeCC
Confidence 99999999997654
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.7e-15 Score=147.75 Aligned_cols=231 Identities=13% Similarity=0.014 Sum_probs=122.7
Q ss_pred cCceeEEeccCCCCC-----------CcEEEEeCCcccC---------CCCceeec--------cccceeeceeEEeecc
Q psy10160 63 YGTILSSAFPSESAS-----------PVVTQTTTTTTEA---------TSPHVYAA--------LTHCVPWSNVCLFGAR 114 (558)
Q Consensus 63 ~~~~~~~~~~~~~p~-----------p~v~W~~~~~~~~---------~~~~~~~g--------~~~~~~~~~~~~~~~~ 114 (558)
+..+.+.|...+.|. |.+.|++++.... ...+.... ......-.|.|.+.+.
T Consensus 22 G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 101 (349)
T 4dep_C 22 DEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNT 101 (349)
T ss_dssp TSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEEEEEEEECS
T ss_pred CCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEEEEEEEecC
Confidence 345668898887664 9999999874211 01111000 0000111345556655
Q ss_pred ceeeEEeeeceeeeCcEEE----ecCCceEeeCCCcEEEEeEe-----eccCCCeEEEEECCEEeccCCceEEEccCCeE
Q psy10160 115 SGYLKETQNGGYLVPVKVN----ITLETQVFGVGSDISIPCDV-----DGYPIPQVFWYKDGQVIENDGVHYRITESNRL 185 (558)
Q Consensus 115 ~~~~~~~~~~~~~~p~~~~----~~~~~~~v~~G~~v~L~C~~-----~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL 185 (558)
.+.......+.+..++... ..+....+.+|+.+.|.|.+ .|.|.|.+.|+|++..+.... ++. ..+..|
T Consensus 102 ~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~-~~~-~~~~~L 179 (349)
T 4dep_C 102 TYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFN-NVI-PEGMNL 179 (349)
T ss_dssp SCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCS-SEE-EETTEE
T ss_pred CceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCcc-cee-ecCCEE
Confidence 5544444444444333221 12335567899999999985 889999999999999886532 332 234679
Q ss_pred EEccCCCCCCeEEEEEEEeCC-cee---eEEEEEEEeccCC---CCCCCCCCccccceeEEeceeeecccceeEEEEecc
Q psy10160 186 HINQANATDSGEYRCVASNSY-TSD---ENAVTIRVEGIFI---HPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCT 258 (558)
Q Consensus 186 ~I~~v~~~D~G~Y~C~a~N~~-G~~---~~~~~l~V~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~ 258 (558)
.|.+++.+|+|.|+|.|.|.. |.. +..+.|.|..++. +|.+...+ ...+. .+.. +......|.
T Consensus 180 ~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~---~~~~~----~v~~---G~~v~l~C~ 249 (349)
T 4dep_C 180 SFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPN---DHVVY----EKEP---GEELLIPCT 249 (349)
T ss_dssp EEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC--------------------------CCCEE
T ss_pred EEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCC---CceeE----EEec---CCcEEEEEE
Confidence 999999999999999999987 554 5777788865432 22222111 11000 1112 333335555
Q ss_pred CC----CCCCCcccccchhhhhhhhhhhhhh--------------cccccchhhhhhhH-HHhhcc
Q psy10160 259 RA----GQLPSYGPHIKRAVEAEAAAADKKR--------------RSRRSLSVVNKWSL-RQAFTT 305 (558)
Q Consensus 259 ~~----g~~~~~~~w~~~~l~~~~~~~~~~~--------------~grth~q~a~~~t~-g~~~~~ 305 (558)
+. |.|+|.+.|++++........+... .....+..+..... |.|...
T Consensus 250 ~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~ 315 (349)
T 4dep_C 250 VYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCH 315 (349)
T ss_dssp EEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEE
T ss_pred EEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEE
Confidence 55 5799999999998665431111111 12245556666666 766653
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=99.60 E-value=4.3e-15 Score=146.30 Aligned_cols=198 Identities=14% Similarity=0.167 Sum_probs=124.4
Q ss_pred cccC-ceeEEeccCCCC-CCcEEEEeCCcccCC----CCce---------------eeccccceeeceeEEeeccceeeE
Q psy10160 61 IDYG-TILSSAFPSESA-SPVVTQTTTTTTEAT----SPHV---------------YAALTHCVPWSNVCLFGARSGYLK 119 (558)
Q Consensus 61 v~~~-~~~~~~~~~~~p-~p~v~W~~~~~~~~~----~~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~ 119 (558)
+.+| .+.+.|...+.| .|.+.|++++..... ..+. ..|.|. |.+.+..+...
T Consensus 17 v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~-------C~a~n~~g~~~ 89 (315)
T 1itb_B 17 SSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYY-------CVVRNSSYCLR 89 (315)
T ss_dssp EETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCE-------ECCCSSSCCCC
T ss_pred EcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEE-------EEEeCCceEEE
Confidence 3444 556888888887 889999999764321 1111 134444 44444443333
Q ss_pred Eeeecee-eeCcEEEecC---CceEeeCCCcEEEEeEe------eccCCCeEEEEECCEEeccCCceEEEccCCeEEEcc
Q psy10160 120 ETQNGGY-LVPVKVNITL---ETQVFGVGSDISIPCDV------DGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQ 189 (558)
Q Consensus 120 ~~~~~~~-~~p~~~~~~~---~~~~v~~G~~v~L~C~~------~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~ 189 (558)
......+ ..+|.+...+ ....+.+|+.+.|.|.+ .|+|.|.+.|+|++..+..+..++. ..+++|.|.+
T Consensus 90 ~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~-~~~~~L~i~~ 168 (315)
T 1itb_B 90 IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFS-GVKDRLIVMN 168 (315)
T ss_dssp EECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEE-EETTEEEESS
T ss_pred EEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEe-ecCceEEEEe
Confidence 3222221 1233332222 23567899999999998 8999999999999999876554543 4567999999
Q ss_pred CCCCCCeEEEEEEE-eCCcee---eEEEEEEEecc--CCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCC
Q psy10160 190 ANATDSGEYRCVAS-NSYTSD---ENAVTIRVEGI--FIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQL 263 (558)
Q Consensus 190 v~~~D~G~Y~C~a~-N~~G~~---~~~~~l~V~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~ 263 (558)
++.+|+|.|+|.|. |..|.. ...+.+.+..+ ..+|.+...+ ...+ .+..|... ...|.+.|.|
T Consensus 169 v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~---~~~~-----~~~~g~~v---~l~C~~~g~P 237 (315)
T 1itb_B 169 VAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPA---NETM-----EVDLGSQI---QLICNVTGQL 237 (315)
T ss_dssp CCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCC---SEEE-----ECCSSSCE---EEEEEEEECT
T ss_pred ceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCC---CCcE-----EEeCCCcE---EEEEEEecCC
Confidence 99999999999999 888887 34455544322 2233332211 1111 12233333 4555566899
Q ss_pred CCcccccchhhhhh
Q psy10160 264 PSYGPHIKRAVEAE 277 (558)
Q Consensus 264 ~~~~~w~~~~l~~~ 277 (558)
+|.+.|++++....
T Consensus 238 ~p~i~W~~~g~~i~ 251 (315)
T 1itb_B 238 SDIAYWKWNGSVID 251 (315)
T ss_dssp TSEEEEEETTEECC
T ss_pred CCeeEEEECCEECC
Confidence 99999999876544
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A | Back alignment and structure |
|---|
Probab=99.60 E-value=5.2e-15 Score=138.57 Aligned_cols=130 Identities=21% Similarity=0.342 Sum_probs=91.0
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCC-cceE-EEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEEeCCccc
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGL-GRAV-SWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQTTTTTTE 89 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~-g~~~-s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~~~~~~~ 89 (558)
.++.|.|.+++.+|+|.|+|.+.|.. +... +..+.|...|..
T Consensus 75 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~------------------------------------ 118 (231)
T 2pet_A 75 SQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEA------------------------------------ 118 (231)
T ss_dssp TTCCEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCC------------------------------------
T ss_pred CCceEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCC------------------------------------
Confidence 44679999999999999999999976 4432 445555544321
Q ss_pred CCCCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcE-EEEeEe-eccCCCeEEEEECC
Q psy10160 90 ATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDI-SIPCDV-DGYPIPQVFWYKDG 167 (558)
Q Consensus 90 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v-~L~C~~-~g~P~p~i~W~~~g 167 (558)
|.+...+....+.+|+.+ .|.|.+ .|.|.|.+.|+|++
T Consensus 119 ----------------------------------------~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~ 158 (231)
T 2pet_A 119 ----------------------------------------TEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNG 158 (231)
T ss_dssp ----------------------------------------CEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETT
T ss_pred ----------------------------------------cEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECC
Confidence 222233344556688887 999999 99999999999999
Q ss_pred EEeccCC---ceEEEcc------C------CeEEEccCCCCCCeEEEEEEEeC-----Cce-eeEEEEEEE
Q psy10160 168 QVIENDG---VHYRITE------S------NRLHINQANATDSGEYRCVASNS-----YTS-DENAVTIRV 217 (558)
Q Consensus 168 ~~l~~~~---~~~~~~~------~------~sL~I~~v~~~D~G~Y~C~a~N~-----~G~-~~~~~~l~V 217 (558)
..+.... .++.+.. + +.|.|.....+|.|.|+|.|.|. .|. .+..+.|.|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V 229 (231)
T 2pet_A 159 QRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL 229 (231)
T ss_dssp EECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred ccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence 9987654 2333322 1 45888755566799999999994 444 344455444
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-15 Score=137.10 Aligned_cols=61 Identities=16% Similarity=0.402 Sum_probs=53.8
Q ss_pred eeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 141 FGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
+.+|+.+.|.|.+ |.|.|.|+|+|..+.... ..+++|.|.+++.+|+|.|+|.|.|..|+.
T Consensus 119 ~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 119 SRGDGSVLLTCGL---TDKTIKWLKDGSIISPLN-----ATKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp CSSSCEEEEECSS---SCSCEEEEETTEECCCSS-----CCSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred cCCCCeEEEEeeC---CCCeEEEEECCEECcccC-----CCcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 4589999999999 899999999999987533 245689999999999999999999999876
|
| >4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.9e-15 Score=135.84 Aligned_cols=79 Identities=16% Similarity=0.377 Sum_probs=62.3
Q ss_pred ceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEcc----CCeEEEccCCCCCCeEEEEEEEeCCceeeEEE
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE----SNRLHINQANATDSGEYRCVASNSYTSDENAV 213 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~----~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 213 (558)
...+..|+.+.+.|.+.|.|.|.|.|++++..+.... .+.... .+.|.|.++..+|+|.|+|.|.|..|..+..+
T Consensus 127 ~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~ 205 (218)
T 4frw_A 127 ALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSR-SFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRI 205 (218)
T ss_dssp CEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEE-EEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEE
T ss_pred eeeeeeccccceeeeccCCcCceEEEEECCcccccCc-eEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEE
Confidence 4445678999999999999999999999988775432 222111 23699999999999999999999999887666
Q ss_pred EEEE
Q psy10160 214 TIRV 217 (558)
Q Consensus 214 ~l~V 217 (558)
.+.|
T Consensus 206 t~~v 209 (218)
T 4frw_A 206 THIL 209 (218)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 5555
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.5e-15 Score=122.88 Aligned_cols=96 Identities=25% Similarity=0.450 Sum_probs=72.3
Q ss_pred eeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 127 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+...........+++|.|.+++.+|+|.|+|.|.|..
T Consensus 8 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 87 (108)
T 3kvq_A 8 RVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVL 87 (108)
T ss_dssp ---CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEEEEC---
T ss_pred cCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEEEEEeCC
Confidence 35777777888889999999999999999999999999999888765544444456789999999999999999999999
Q ss_pred ceeeEEEEEEEeccCC
Q psy10160 207 TSDENAVTIRVEGIFI 222 (558)
Q Consensus 207 G~~~~~~~l~V~~~~~ 222 (558)
|.....+.|.|.+++.
T Consensus 88 g~~~~~~~l~V~~~~~ 103 (108)
T 3kvq_A 88 GCAKVEAFFIIEGAQE 103 (108)
T ss_dssp -CEEEEEEEEEEC---
T ss_pred CceEEEEEEEEeCCCc
Confidence 9999999999987653
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=116.75 Aligned_cols=92 Identities=25% Similarity=0.472 Sum_probs=80.3
Q ss_pred eeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCC---eEEEccCCCCCCeEEEEEEE
Q psy10160 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 127 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~ 203 (558)
..||.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+..+. ++.+..++ +|.|.+++.+|+|.|+|.|.
T Consensus 4 ~~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 82 (99)
T 3puc_A 4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGG-KYKLSEDKGGFFLEIHKTDTSDSGLYTCTVK 82 (99)
T ss_dssp CEEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSS-SEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred CCCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCC-CEEEEEeCCEEEEEECCCCcccCEEEEEEEE
Confidence 357788888888999999999999999999999999999999987654 55554433 79999999999999999999
Q ss_pred eCCceeeEEEEEEEec
Q psy10160 204 NSYTSDENAVTIRVEG 219 (558)
Q Consensus 204 N~~G~~~~~~~l~V~~ 219 (558)
|..|.....+.|.|.+
T Consensus 83 n~~g~~~~~~~l~V~~ 98 (99)
T 3puc_A 83 NSAGSVSSSCKLTIKA 98 (99)
T ss_dssp ETTEEEEEEEEEEEEC
T ss_pred eCCCcEeEEEEEEEEe
Confidence 9999999999998853
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.2e-15 Score=117.91 Aligned_cols=92 Identities=26% Similarity=0.455 Sum_probs=79.2
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCc-eEEEccCC--eEEEccCCCCCCeEEEEEEEe
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV-HYRITESN--RLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~-~~~~~~~~--sL~I~~v~~~D~G~Y~C~a~N 204 (558)
.||.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+..... ++....++ +|.|.+++.+|+|.|+|.|.|
T Consensus 4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n 83 (100)
T 2kdg_A 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKN 83 (100)
T ss_dssp EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEc
Confidence 477777788888999999999999999999999999999999876542 33333444 899999999999999999999
Q ss_pred CCceeeEEEEEEEec
Q psy10160 205 SYTSDENAVTIRVEG 219 (558)
Q Consensus 205 ~~G~~~~~~~l~V~~ 219 (558)
..|..+..+.|.|.+
T Consensus 84 ~~g~~~~~~~l~V~~ 98 (100)
T 2kdg_A 84 RAGEATFTVQLDVLA 98 (100)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CCCeEEEEEEEEEEe
Confidence 999999999999864
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.59 E-value=5.4e-15 Score=134.81 Aligned_cols=167 Identities=18% Similarity=0.175 Sum_probs=114.3
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEcc--CC--eEEEccCCCCCCeEEEEEEE
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE--SN--RLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~--~~--sL~I~~v~~~D~G~Y~C~a~ 203 (558)
.||.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+...+.++.+.. ++ +|.|.+++.+|+|.|+|.+.
T Consensus 3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (197)
T 2j8h_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82 (197)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence 478888888899999999999999999999999999999999876655555432 33 89999999999999999999
Q ss_pred eCCceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhh-hh
Q psy10160 204 NSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAA-AD 282 (558)
Q Consensus 204 N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~-~~ 282 (558)
|..|.....+.|.|..++.... .+...... ...+..|....+.| .+.|.|+|.+.|++++....... ..
T Consensus 83 n~~g~~~~~~~l~V~~~p~~~~---~~~~~~~~----~~~~~~g~~~~l~C---~~~g~p~p~i~W~~~~~~~~~~~~~~ 152 (197)
T 2j8h_A 83 NQGGSVSGTASLEVEVPAKIHL---PKTLEGMG----AVHALRGEVVSIKI---PFSGKPDPVITWQKGQDLIDNNGHYQ 152 (197)
T ss_dssp ETTEEEEEEEEEEEEEEEEECC---SSCBTTBE----EEEEETTCCCEEEE---EEEEESCCEEEEEESSCEECSSSSCE
T ss_pred ECCCceeEEEEEEEcCCCcCCC---CccccccC----eEEEeCCCEEEEEE---EEEecCCCcEEEEECCEEeecCCCEE
Confidence 9999999999999876542111 11001000 01123333444444 45588999999999876543222 11
Q ss_pred h---hhcccccchh-hhhhhHHHhhc
Q psy10160 283 K---KRRSRRSLSV-VNKWSLRQAFT 304 (558)
Q Consensus 283 ~---~~~grth~q~-a~~~t~g~~~~ 304 (558)
. ...+...+.. +.....|.|..
T Consensus 153 ~~~~~~~~~L~i~~~~~~~d~G~Y~C 178 (197)
T 2j8h_A 153 VIVTRSFTSLVFPNGVERKDAGFYVV 178 (197)
T ss_dssp EEECSSEEEEECTTCCCGGGCEEEEE
T ss_pred EEEcCCceEEEEeCCCCcccCEeEEE
Confidence 1 1123344444 55566665544
|
| >3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-15 Score=138.34 Aligned_cols=131 Identities=18% Similarity=0.356 Sum_probs=92.6
Q ss_pred CceEe----cCCeEEEcCCCCCCCEEEEEEEEeCCcc--eE--EEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCC
Q psy10160 7 ENYEL----NKNMLTIKRVEPERLGAYTCQAYNGLGR--AV--SWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASP 78 (558)
Q Consensus 7 ~r~~~----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~--~~--s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p 78 (558)
+|+.+ .+.+|.|.+++.+|+|.|+|.+.|..+. .. ...+.|...+.
T Consensus 59 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~-------------------------- 112 (213)
T 3mj8_L 59 DHFSGSNSGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPN-------------------------- 112 (213)
T ss_dssp TTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCC--------------------------
T ss_pred CcEEEEecCCEEEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCC--------------------------
Confidence 46653 3457999999999999999999998873 22 23444432110
Q ss_pred cEEEEeCCcccCCCCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeecc-C
Q psy10160 79 VVTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGY-P 157 (558)
Q Consensus 79 ~v~W~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P 157 (558)
.+|.+...+....+.+|+.+.|.|.+.|. |
T Consensus 113 -------------------------------------------------~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p 143 (213)
T 3mj8_L 113 -------------------------------------------------AAPSVTLFPPSSEELKTNQATLVCMINGFYP 143 (213)
T ss_dssp -------------------------------------------------BCCEEEEECCCHHHHTTTEEEEEEEEEEEBS
T ss_pred -------------------------------------------------CCCeEEccCCCcccccCCcEEEEEEeeceeC
Confidence 23444444444445589999999999996 3
Q ss_pred C-CeEEEEECCEEeccC---------CceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEE
Q psy10160 158 I-PQVFWYKDGQVIEND---------GVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVT 214 (558)
Q Consensus 158 ~-p~i~W~~~g~~l~~~---------~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 214 (558)
+ +.+.|+|+|..+... +..+.. .+.|.|.++..+|+|.|+|.|.|..+....++.
T Consensus 144 ~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 208 (213)
T 3mj8_L 144 ADVAVTWEADGTPITQGVKTTQPSKSDSKYMA--TSYLTMTADAWKSRNTFICKVTHGGNTVEKSLS 208 (213)
T ss_dssp SCCEEEEEETTEEECTTEEECCCEEETTEEEE--EEEEEEESHHHHSCSCEEEEEEETTEEEEEEEC
T ss_pred CCeEEEEEcCCcccCCCcccCCcCccCCcEEE--EEEEEEeHHHcCCCCEEEEEEEECCccEEeeec
Confidence 3 389999999988642 112221 246999999999999999999999877665543
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-14 Score=133.26 Aligned_cols=142 Identities=20% Similarity=0.245 Sum_probs=101.9
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEc---cCCeEEEccC-CCCCCeEEEEEEE
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT---ESNRLHINQA-NATDSGEYRCVAS 203 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~---~~~sL~I~~v-~~~D~G~Y~C~a~ 203 (558)
.||.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.......... .+.+|.|.++ +.+|+|.|+|.+.
T Consensus 5 ~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~ 84 (212)
T 2yd6_A 5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVAS 84 (212)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEE
T ss_pred CCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEE
Confidence 57888888999999999999999999999999999999999987644222221 2236999999 5999999999999
Q ss_pred eCCceeeEEEEEEEeccCCCC-CCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhh
Q psy10160 204 NSYTSDENAVTIRVEGIFIHP-SCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEA 278 (558)
Q Consensus 204 N~~G~~~~~~~l~V~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~ 278 (558)
|..|.....+.|.|...+..| ..+......... .+..|.... ..|.+.|.|+|.+.|++++.....
T Consensus 85 n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~------~~~~g~~v~---l~C~~~g~p~p~v~W~~~g~~l~~ 151 (212)
T 2yd6_A 85 NNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLK------VVERTRTAT---MLCAASGNPDPEITWFKDFLPVDT 151 (212)
T ss_dssp ETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCE------EEETTSCEE---EEEEEECSSCCEEEEEETTEEC--
T ss_pred cCCCcEEEEEEEEEeccCccCCCcceeecCCcce------eEecCCCEE---EEEEecCCCCCeEEEEECCccccC
Confidence 999999899999997653221 111111111111 122333344 445556899999999999765543
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.5e-14 Score=130.26 Aligned_cols=121 Identities=17% Similarity=0.310 Sum_probs=83.6
Q ss_pred CceEe-cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEEe
Q psy10160 7 ENYEL-NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQTT 84 (558)
Q Consensus 7 ~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~~ 84 (558)
+|+.+ .+++|.|.+++.+|+|.|+|.+.|..+... .+.|.|...+.
T Consensus 62 ~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~-------------------------------- 109 (193)
T 2if7_A 62 KRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLR-------------------------------- 109 (193)
T ss_dssp TTEEECTTCCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCE--------------------------------
T ss_pred ccEEECCCeEEEECCCCcccCceEEEEEEecCCCeEEEEEEEEEccCC--------------------------------
Confidence 35554 468999999999999999999999887643 33444432210
Q ss_pred CCcccCCCCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCC-cEEEEeEeecc-CCCeEE
Q psy10160 85 TTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGS-DISIPCDVDGY-PIPQVF 162 (558)
Q Consensus 85 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~-~v~L~C~~~g~-P~p~i~ 162 (558)
.|.+.... .....|. .+.|.|.+.|. |.|.+.
T Consensus 110 --------------------------------------------~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~ 143 (193)
T 2if7_A 110 --------------------------------------------NIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFR 143 (193)
T ss_dssp --------------------------------------------EEEEEECC--C---CSSEEEEEEEEEESCCTTCEEE
T ss_pred --------------------------------------------CCeEecCc--eeecCCCceEEEEEEEecCCCceEEE
Confidence 01111111 1223455 89999999995 589999
Q ss_pred EEECCEEeccCCceEEEccCCeEEEccCCCC-CCeEEEEEEEeCCceeeEEEE
Q psy10160 163 WYKDGQVIENDGVHYRITESNRLHINQANAT-DSGEYRCVASNSYTSDENAVT 214 (558)
Q Consensus 163 W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~-D~G~Y~C~a~N~~G~~~~~~~ 214 (558)
|+++|..+.. ++.|.|.....+ |+|.|+|.|.|..|..+..+.
T Consensus 144 W~~~g~~l~~---------~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~~ 187 (193)
T 2if7_A 144 WEALGNTLSS---------QPNLTVSWDPRISSEQDYTCIAENAVSNLSFSVS 187 (193)
T ss_dssp EEETTEEEES---------SSEEEEEECTTTCSCCEEEEEEEETTEEEEEEEE
T ss_pred EEeCCEEcCC---------CCeEEEEeccCcCCCCcEEEEEECCCCccccccc
Confidence 9999876632 235777655554 899999999999999866543
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.9e-15 Score=119.06 Aligned_cols=91 Identities=26% Similarity=0.438 Sum_probs=78.9
Q ss_pred eeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeC
Q psy10160 126 YLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 126 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
+..||.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.... ......+.+|.|.+++.+|+|.|+|.|.|.
T Consensus 8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~ 86 (99)
T 2yr3_A 8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYAR-STCEAGVAELHIQDALPEDHGTYTCLAENA 86 (99)
T ss_dssp CCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCC-CEEETTEEEEEECSCCTTCCBCEEEEEECS
T ss_pred cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccc-eEeeCCeEEEEECCCChhhCEEEEEEEEEC
Confidence 3468888888889999999999999999999999999999998887543 333344468999999999999999999999
Q ss_pred CceeeEEEEEEE
Q psy10160 206 YTSDENAVTIRV 217 (558)
Q Consensus 206 ~G~~~~~~~l~V 217 (558)
.|..+..+.|.|
T Consensus 87 ~g~~~~~~~l~V 98 (99)
T 2yr3_A 87 LGQVSCSAWVTV 98 (99)
T ss_dssp SCEEEEECCEEE
T ss_pred CCeEEEEEEEEE
Confidence 999988888877
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.3e-15 Score=122.67 Aligned_cols=98 Identities=26% Similarity=0.470 Sum_probs=83.9
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEcc--CC--eEEEccCCCCCCeEEEEEEE
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE--SN--RLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~--~~--sL~I~~v~~~D~G~Y~C~a~ 203 (558)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.....++.+.. ++ +|.|.+++.+|+|.|+|.|.
T Consensus 7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 86 (110)
T 2dm2_A 7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAA 86 (110)
T ss_dssp CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEE
T ss_pred CCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEE
Confidence 467777778888999999999999999999999999999998876545665543 33 69999999999999999999
Q ss_pred eCCceeeEEEEEEEeccCCCCC
Q psy10160 204 NSYTSDENAVTIRVEGIFIHPS 225 (558)
Q Consensus 204 N~~G~~~~~~~l~V~~~~~~p~ 225 (558)
|..|.....+.|.|..++.+|.
T Consensus 87 N~~g~~~~~~~l~V~~~~~~P~ 108 (110)
T 2dm2_A 87 NPQGRISCTGRLMVQAVNSGPS 108 (110)
T ss_dssp CTTCCEEECCCEEEECCSCCSS
T ss_pred ECCCeEEEEEEEEEECCCCCCC
Confidence 9999999999999987765543
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-14 Score=128.68 Aligned_cols=146 Identities=14% Similarity=0.147 Sum_probs=98.9
Q ss_pred ccccC-ceeEEeccCCCCCC-cEEEEeCCcccCCCCce---------eeccccceeeceeEEeeccceeeEEeeeceeee
Q psy10160 60 AIDYG-TILSSAFPSESASP-VVTQTTTTTTEATSPHV---------YAALTHCVPWSNVCLFGARSGYLKETQNGGYLV 128 (558)
Q Consensus 60 ~v~~~-~~~~~~~~~~~p~p-~v~W~~~~~~~~~~~~~---------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (558)
.+..| .+.+.|...+.+.| .+.|++++..+...... ..|.|.|.+.+ ..... ...+.+..
T Consensus 15 ~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~-------~~~s~--~~~l~V~~ 85 (176)
T 1f2q_A 15 RIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQ-------VNESE--PVYLEVFS 85 (176)
T ss_dssp EEETTCCEEEECCTTCC----CCEEEETTEECSCCSSEEEECSCCGGGCEEEEEECTT-------SSCCC--CEEEEEEC
T ss_pred ceecCCcEEEEEeCCCCCCcceEEEEECCeECCCCceEEEEeccceecCEEEEEEcCC-------ccccc--cEEEEEeC
Confidence 34455 56688988888876 69999998776654322 25666666543 22111 11112223
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEe-eccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
++... ......+.+|+.+.|.|.+ .+.|.|.+.|+|+|..+... ..++.|.|.+++.+|+|.|+|.|.|..+
T Consensus 86 ~~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~ 158 (176)
T 1f2q_A 86 DWLLL-QASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW------YENHNISITNATVEDSGTYYCTGKVWQL 158 (176)
T ss_dssp SSEEE-EESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC------CCSSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred cceee-cCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee------cCCCeEEECCCCcccCEEEEEEEEeCCc
Confidence 33333 3334577899999999999 56777899999999988543 2356899999999999999999999754
Q ss_pred e-eeEEEEEEEeccC
Q psy10160 208 S-DENAVTIRVEGIF 221 (558)
Q Consensus 208 ~-~~~~~~l~V~~~~ 221 (558)
. .+..+.|.|.+++
T Consensus 159 ~~~s~~~~l~V~~~p 173 (176)
T 1f2q_A 159 DYESEPLNITVIKAP 173 (176)
T ss_dssp EEECCCEEEEEECSC
T ss_pred ceEecCEEEEEecCC
Confidence 4 4567889997665
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.8e-14 Score=128.36 Aligned_cols=120 Identities=18% Similarity=0.360 Sum_probs=86.1
Q ss_pred CCceEe-cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEE
Q psy10160 6 SENYEL-NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQT 83 (558)
Q Consensus 6 ~~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~ 83 (558)
++|+.+ .+++|.|.+++.+|+|.|+|.+.|..|... +..+.|.+.... +
T Consensus 57 ~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~----------------------~------- 107 (182)
T 1hnf_A 57 KDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV----------------------S------- 107 (182)
T ss_dssp CTTEEECTTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECCC----------------------C-------
T ss_pred CCeEEECCCCCEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCcC----------------------C-------
Confidence 456664 678999999999999999999999888753 344444443211 0
Q ss_pred eCCcccCCCCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEE
Q psy10160 84 TTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFW 163 (558)
Q Consensus 84 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W 163 (558)
+|.+.. .+..+.|.|.+.+.|.|.|.|
T Consensus 108 ---------------------------------------------~P~i~~--------~~~~v~L~C~~~~~p~~~~~W 134 (182)
T 1hnf_A 108 ---------------------------------------------KPKISW--------TCINTTLTCEVMNGTDPELNL 134 (182)
T ss_dssp ---------------------------------------------CCEEEE--------ETTTTEEEEECSSCSSCEEEE
T ss_pred ---------------------------------------------CCEEEE--------ccCcEEEEeEccCCCCCEEEE
Confidence 111111 123688999999999999999
Q ss_pred EECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy10160 164 YKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216 (558)
Q Consensus 164 ~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 216 (558)
+++|..+.. .+..|.+.. ..+|+|.|+|.|.|..|.......+.
T Consensus 135 ~~~g~~l~~--------~~~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~ 178 (182)
T 1hnf_A 135 YQDGKHLKL--------SQRVITHKW-TTSLSAKFKCTAGNKVSKESSVEPVS 178 (182)
T ss_dssp EESSCEEEE--------ESSCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEEE
T ss_pred EECCEECCC--------CCcEEEEec-ccCCCcEEEEEEEeCCCCcEEcceec
Confidence 999988711 223455433 57899999999999999988776654
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.4e-15 Score=122.53 Aligned_cols=98 Identities=23% Similarity=0.398 Sum_probs=83.6
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceE-EEccCC--eEEEccCCCCCCeEEEEEEEe
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHY-RITESN--RLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~-~~~~~~--sL~I~~v~~~D~G~Y~C~a~N 204 (558)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+....... ....++ +|.|.+++.+|+|.|+|.|.|
T Consensus 8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n 87 (110)
T 2dm3_A 8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATN 87 (110)
T ss_dssp CCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEEC
T ss_pred CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEEC
Confidence 57888888889999999999999999999999999999998887654333 223333 899999999999999999999
Q ss_pred CCceeeEEEEEEEeccCCCCC
Q psy10160 205 SYTSDENAVTIRVEGIFIHPS 225 (558)
Q Consensus 205 ~~G~~~~~~~l~V~~~~~~p~ 225 (558)
..|..+..+.|.|.+++.+|.
T Consensus 88 ~~g~~~~~~~l~V~~~p~~P~ 108 (110)
T 2dm3_A 88 RAGQNSFSLELVVAAKESGPS 108 (110)
T ss_dssp SSCEEEECCEEEEECCCCSSS
T ss_pred CCCEEEEEEEEEEeCCCCCCC
Confidence 999999999999987765553
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.56 E-value=5.4e-15 Score=146.34 Aligned_cols=193 Identities=15% Similarity=0.152 Sum_probs=112.5
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEE--Ee---CCCCccCCCCc--ccc-CceeEEeccCCC-CCC---cEEE
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL--QA---LPSEKVADPNA--IDY-GTILSSAFPSES-ASP---VVTQ 82 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V--~~---~p~~~~~~~~~--v~~-~~~~~~~~~~~~-p~p---~v~W 82 (558)
.|.|.++..+|+|.|+|.|.|..+.. ...+.+ .. .|.....+|.. +.. ..+.+.|...+. |.| .|.|
T Consensus 73 ~l~i~~~~~~d~g~Y~C~a~n~~~~~-~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W 151 (323)
T 2wqr_A 73 ELTLSQKHWLSDRTYTCQVTYQGHTF-EDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTW 151 (323)
T ss_dssp EEEEEHHHHHTTCCEEEEEEETTEEE-EEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEE
T ss_pred EEEEcHHHcCCCCcEEEEEEeCCCCc-ceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEE
Confidence 57788888889999999999987654 222221 00 12222333332 333 466788887775 566 8999
Q ss_pred EeCCcccCCC-Ccee----eccc---cceee---------ceeEEeecccee--eEEeeec--eeeeCcEEEecCCceEe
Q psy10160 83 TTTTTTEATS-PHVY----AALT---HCVPW---------SNVCLFGARSGY--LKETQNG--GYLVPVKVNITLETQVF 141 (558)
Q Consensus 83 ~~~~~~~~~~-~~~~----~g~~---~~~~~---------~~~~~~~~~~~~--~~~~~~~--~~~~p~~~~~~~~~~~v 141 (558)
++++...... .... .+.+ ..+.+ .|.|.+.+.... ....... ....+|.+...+.....
T Consensus 152 ~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~ 231 (323)
T 2wqr_A 152 SRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWP 231 (323)
T ss_dssp EETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCT
T ss_pred EECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHH
Confidence 9975333221 1100 0100 01111 345666555321 1111111 12346665543333222
Q ss_pred eCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCCceE---EEccC------CeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 142 GVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGVHY---RITES------NRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 142 ~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~~~---~~~~~------~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
..|+.++|.|.+.|. |.+ .|.|+|+|..+....... ....+ +.|.|.++..+|+|.|+|.|.|..+.
T Consensus 232 ~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 232 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp TCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred hcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 349999999999994 443 799999999886431000 01112 36999999999999999999998876
|
| >2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-14 Score=135.30 Aligned_cols=90 Identities=16% Similarity=0.295 Sum_probs=65.0
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEE--CCEEec-----------cCCceEEEccC---CeEEEccCCC
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYK--DGQVIE-----------NDGVHYRITES---NRLHINQANA 192 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~--~g~~l~-----------~~~~~~~~~~~---~sL~I~~v~~ 192 (558)
++.+...+....+.+|+.++|.|.+.|.|.|.+.|+| ++..+. ....++.+... .+|.|.+++.
T Consensus 135 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 214 (247)
T 2ghw_B 135 ETTLTQSPATLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEP 214 (247)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCG
T ss_pred ceEEEccCCEEEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCH
Confidence 4444555666778999999999999999999999999 554331 11234544322 3699999999
Q ss_pred CCCeEEEEEEEeCCcee-eEEEEEEEe
Q psy10160 193 TDSGEYRCVASNSYTSD-ENAVTIRVE 218 (558)
Q Consensus 193 ~D~G~Y~C~a~N~~G~~-~~~~~l~V~ 218 (558)
+|+|.|+|.|.|..+.. .....|.|.
T Consensus 215 ~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 215 EDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred HHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 99999999999865433 244566665
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-14 Score=130.75 Aligned_cols=138 Identities=14% Similarity=0.250 Sum_probs=103.4
Q ss_pred eeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCC---eEEEccCCCCCCeEEEEEEE
Q psy10160 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 127 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~ 203 (558)
..||.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.... ++.+..++ +|.|.+++.+|+|.|+|.+.
T Consensus 5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 83 (197)
T 3lcy_A 5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSR-KYKMSSDGRTHTLTVMTEEQEDEGVYTCIAT 83 (197)
T ss_dssp CEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCS-SEEEEESSSEEEEEEECCSGGGCEEEEEEEE
T ss_pred CCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCc-cEEEEeCCCEEEEEEecCCccCCEEEEEEEE
Confidence 357888888889999999999999999999999999999999987654 55555544 79999999999999999999
Q ss_pred eCCceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhh
Q psy10160 204 NSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAE 277 (558)
Q Consensus 204 N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~ 277 (558)
|..|.....+.|.|..++...... + ...... +..|.... ..|.+.+.|+|.+.|++++....
T Consensus 84 n~~~~~~~~~~l~v~~~p~~~~~~--~-~~~~~~------~~~g~~~~---l~C~~~~~p~p~v~W~~~~~~~~ 145 (197)
T 3lcy_A 84 NEVGEVETSSKLLLQATPQFHPGY--P-LKEKYY------GAVGSTLR---LHVMYIGRPVPAMTWFHGQKLLQ 145 (197)
T ss_dssp CSSCEEEEEEEEEEEEEEEECTTS--C-CCSEEE------EETTSCEE---EEEEEEEESCCEEEEEETTEECC
T ss_pred CCCCceeEEEEEEEEcCCCCCCCc--c-CCccee------ecCCCeEE---EEEEEeeeeCCeeEEeECCEECC
Confidence 999999888888887554222111 1 111111 12223333 44555589999999999875543
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-14 Score=117.54 Aligned_cols=94 Identities=29% Similarity=0.478 Sum_probs=76.2
Q ss_pred eCcEEEe---cCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEcc-CCeEEEccCCCCCCeEEEEEEE
Q psy10160 128 VPVKVNI---TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE-SNRLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 128 ~p~~~~~---~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~a~ 203 (558)
.+|.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+......+.... ..+|.|.+++.+|+|.|+|.|.
T Consensus 20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 99 (118)
T 2e7c_A 20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQ 99 (118)
T ss_dssp EEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEEEE
T ss_pred cCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEEEEE
Confidence 4666654 35677889999999999999999999999999999873322222222 2359999999999999999999
Q ss_pred eCCceeeEEEEEEEeccC
Q psy10160 204 NSYTSDENAVTIRVEGIF 221 (558)
Q Consensus 204 N~~G~~~~~~~l~V~~~~ 221 (558)
|..|..+..+.|.|.+.|
T Consensus 100 N~~G~~~~~~~l~V~~~P 117 (118)
T 2e7c_A 100 IENMKDTATIRIRVVEKA 117 (118)
T ss_dssp CSSCEECCEEEEEEECCC
T ss_pred eCCCeEEEEEEEEEEcCC
Confidence 999999999999997543
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-14 Score=124.53 Aligned_cols=104 Identities=28% Similarity=0.480 Sum_probs=84.8
Q ss_pred eeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEc--cC--CeEEEccCCC
Q psy10160 117 YLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT--ES--NRLHINQANA 192 (558)
Q Consensus 117 ~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~--~~--~sL~I~~v~~ 192 (558)
.+.......+..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.... ++.+. .+ .+|.|.+++.
T Consensus 29 ~~~~~~~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~-~~~~~~~~~~~~~L~I~~v~~ 107 (154)
T 1fhg_A 29 FLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESR-HFQIDYDEEGNCSLTISEVCG 107 (154)
T ss_dssp -----CCCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSS-SEEEEECTTCEEEEEESSCCG
T ss_pred eeeehhcccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCC-cEEEEECCCCeEEEEECCCCh
Confidence 3344445556678889888889999999999999999999999999999999987654 55443 22 3899999999
Q ss_pred CCCeEEEEEEEeCCceeeEEEEEEEeccC
Q psy10160 193 TDSGEYRCVASNSYTSDENAVTIRVEGIF 221 (558)
Q Consensus 193 ~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 221 (558)
+|+|.|+|.|.|..|.....+.|.|..++
T Consensus 108 ~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p 136 (154)
T 1fhg_A 108 DDDAKYTCKAVNSLGEATCTAELLVETMG 136 (154)
T ss_dssp GGCEEEEEEEEETTEEEEEEEEEEEECC-
T ss_pred hcCEEEEEEEEECCCeEEEEEEEEEeCcC
Confidence 99999999999999999999999997554
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=139.21 Aligned_cols=187 Identities=16% Similarity=0.117 Sum_probs=123.8
Q ss_pred cccC-ceeEEeccCCCCCCcEEEEeCCccc----CCC--------CceeeccccceeeceeEEeeccceeeEEeeeceee
Q psy10160 61 IDYG-TILSSAFPSESASPVVTQTTTTTTE----ATS--------PHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYL 127 (558)
Q Consensus 61 v~~~-~~~~~~~~~~~p~p~v~W~~~~~~~----~~~--------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (558)
+..| .+.+.|...+ .+.|++++..+ ... .....|.|.|.+.+ +. .....+.+.
T Consensus 24 v~~G~~v~l~C~~~~----~i~W~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n---------g~-~~~~~l~V~ 89 (290)
T 2o26_X 24 VEAGDTLSLTCIDPD----FVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSN---------GL-TSSIYVFVR 89 (290)
T ss_dssp EETTSCEEEEEECTT----EEEEEEECSSSCEEEECSSEEEETTCCGGGCEEEEEEESS---------SC-EEEEEEEEE
T ss_pred EcCCCcEEEEECCCC----cEEEecCCcceeeecCCCceEEEeccCHHhCeEEEEEeeC---------Cc-cEEEEEEEe
Confidence 3444 5668888776 89999998766 111 11124555555544 11 223333444
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCC-CeEEE-EECCEEeccCCceEEEccCCeEEEccCCCCCCe-EEEEEEEe
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPI-PQVFW-YKDGQVIENDGVHYRITESNRLHINQANATDSG-EYRCVASN 204 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~-p~i~W-~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G-~Y~C~a~N 204 (558)
.++.+...+....+.+|+.+.|.|.+.+ |. |.+.| .++|..+..+ .++....++.|.|.+++.+|+| .|+|.|.|
T Consensus 90 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~-~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n 167 (290)
T 2o26_X 90 DPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTD-LTFVPNPKAGITIKNVKRAYHRLCVRCAAQR 167 (290)
T ss_dssp CSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTT-CEEEEETTTEEEEESCCGGGTTCEEEEEEEE
T ss_pred CCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCC-CceeeCCCCCEEEecccHHHCCCEEEEEEEE
Confidence 5555556677788899999999999996 77 99999 4688777654 4777777789999999999999 99999999
Q ss_pred CCceee-EEEEEEEeccC-CCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCc-ccccchhhh
Q psy10160 205 SYTSDE-NAVTIRVEGIF-IHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSY-GPHIKRAVE 275 (558)
Q Consensus 205 ~~G~~~-~~~~l~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~-~~w~~~~l~ 275 (558)
..|... ..+.|.|.... .+|.+...+. . ..+..|.... ..|.+.|.|.|. +.|++++..
T Consensus 168 ~~~~~~s~~~~l~V~~~~~~~P~i~~~~~--~-------~~v~~G~~v~---l~C~~~g~p~p~~i~W~~~~~~ 229 (290)
T 2o26_X 168 DGTWLHSDKFTLKVREAIKAIPVVSVPET--S-------HLLKKGDTFT---VVCTIKDVSTSVNSMWLKMNPQ 229 (290)
T ss_dssp TTEEEECCCEEEEEECCCCSCCEEECSCS--B-------CCCCTTCCEE---EEEEEEESSTTCEEEEEEESSS
T ss_pred CCceEEeEEEEEEEEeCCCCCCccccCCC--c-------ceEecCCcEE---EEEEEecCCcceeEEEecCCCC
Confidence 966543 45788886422 3333322111 1 1122233333 455555889997 999999766
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=114.99 Aligned_cols=87 Identities=24% Similarity=0.463 Sum_probs=76.2
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
.||.+...+....+.+|+.+.|.|.+.|.| |.+.|+|++..+..++ ++.+. +++|.|.+++.+|+|.|+|.|.|..|
T Consensus 8 ~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~-~~~~~-~~~L~i~~~~~~D~G~Y~C~a~n~~g 84 (95)
T 2ckn_A 8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESN-RTRIT-GEEVEVRDSIPADSGLYACVTSSPSG 84 (95)
T ss_dssp CSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCS-SEEEC-SSEEEESSCCGGGSEEEEEEEEETTE
T ss_pred CCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCC-CEEEe-CCEEEECCCChHHCEEEEEEeccCCC
Confidence 366677778888899999999999999998 8999999999887654 55554 67999999999999999999999999
Q ss_pred eeeEEEEEEE
Q psy10160 208 SDENAVTIRV 217 (558)
Q Consensus 208 ~~~~~~~l~V 217 (558)
.....+.|.|
T Consensus 85 ~~~~~~~l~V 94 (95)
T 2ckn_A 85 SDTTYFSVNV 94 (95)
T ss_dssp EEEEEEEEEE
T ss_pred cEEEEEEEEE
Confidence 9988888887
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-14 Score=141.12 Aligned_cols=221 Identities=10% Similarity=0.012 Sum_probs=128.4
Q ss_pred CCCCCCcEEEEeCCcccCCCCceeeccc---cceee---------ceeEEeeccceeeEEeeeceeee------------
Q psy10160 73 SESASPVVTQTTTTTTEATSPHVYAALT---HCVPW---------SNVCLFGARSGYLKETQNGGYLV------------ 128 (558)
Q Consensus 73 ~~~p~p~v~W~~~~~~~~~~~~~~~g~~---~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~------------ 128 (558)
.+.|.|.+.|++++..+..+.+...... ..+.+ .|.|.+.+..+... .....+..
T Consensus 27 ~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~l~v~~~~~~~~~~~~~~ 105 (312)
T 2y23_A 27 KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYLIDEEELKRLLALSHEHK 105 (312)
T ss_dssp SCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEEECHHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEEEEEeeeeeeecccccCC
Confidence 6689999999999988876554431111 12222 34666666544222 11111110
Q ss_pred CcEEEecC-CceEeeCCCcEEEEeEee-ccCCCeEEEEECCEEeccCCceEEEccC---C--eEEEccCCCCCCeEEEEE
Q psy10160 129 PVKVNITL-ETQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIENDGVHYRITES---N--RLHINQANATDSGEYRCV 201 (558)
Q Consensus 129 p~~~~~~~-~~~~v~~G~~v~L~C~~~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~---~--sL~I~~v~~~D~G~Y~C~ 201 (558)
+|.+...+ ....+.+|+.+.|.|.+. +.|.|.+.|++++..+.... ++.+..+ + +|.|.+++.+|+|.|+|.
T Consensus 106 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 184 (312)
T 2y23_A 106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGP-KYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQ 184 (312)
T ss_dssp SCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSS-SCEEEEETTTTEEEEEESCCCGGGCEEEEEE
T ss_pred CCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCC-cEEEEEccCCCEEEEEEccCCcccCEeEEEE
Confidence 44443333 377789999999999999 89999999999999987654 4444332 2 499999999999999999
Q ss_pred EEeCCceeeEEEEEEEeccCC-----------CCCC-CCCCccccceeEEeceeeecccceeEEEEeccCCCCCCC-ccc
Q psy10160 202 ASNSYTSDENAVTIRVEGIFI-----------HPSC-RDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPS-YGP 268 (558)
Q Consensus 202 a~N~~G~~~~~~~l~V~~~~~-----------~p~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~-~~~ 268 (558)
+.|..+..... +.+.+... ++.. ...|.+. ......+.. +......|.+.+.|+| .+.
T Consensus 185 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~v~~---G~~~~l~C~~~~~p~~~~v~ 255 (312)
T 2y23_A 185 LQDGKATNHST--VVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV----EYLSWEVTG---ECNVLLKCKVANIKKETHIV 255 (312)
T ss_dssp EESSSCEEEEE--EEECTHHHHHHHHHHHHHHHHHHHHHSSEEE----EEEEEEEET---TTEEEEEEEEESCCSSCEEE
T ss_pred EEeCCceEEEE--EEEcchhhhhhcccccccccchhhccCCcee----ecceEEEeC---CCEEEEEEEEcCCCCCCEEE
Confidence 98765554443 33321000 0000 0001110 000112233 4445556666688888 999
Q ss_pred ccchhhhhhhhh-hhhhh-cccccchhhhhhhHHHhhc
Q psy10160 269 HIKRAVEAEAAA-ADKKR-RSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 269 w~~~~l~~~~~~-~~~~~-~grth~q~a~~~t~g~~~~ 304 (558)
|++++....... ..... .+...+..+.+...|.|..
T Consensus 256 W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C 293 (312)
T 2y23_A 256 WYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEV 293 (312)
T ss_dssp EEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEE
T ss_pred EeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEE
Confidence 999876655332 11111 1344555566666665554
|
| >3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ... | Back alignment and structure |
|---|
Probab=99.54 E-value=7.2e-15 Score=135.90 Aligned_cols=72 Identities=19% Similarity=0.329 Sum_probs=54.0
Q ss_pred eeCCCcEEEEeEeec-cCCC-eEEEEECCEEeccC-CceEEE--cc------CCeEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 141 FGVGSDISIPCDVDG-YPIP-QVFWYKDGQVIEND-GVHYRI--TE------SNRLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 141 v~~G~~v~L~C~~~g-~P~p-~i~W~~~g~~l~~~-~~~~~~--~~------~~sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
+.+|+.+.|.|.+.| .|.| .+.|+|+|..+... ...... .. .++|.|.++..+|+|.|+|.|.|.....
T Consensus 124 ~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 203 (213)
T 3d9a_L 124 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 203 (213)
T ss_dssp HHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred hcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence 347899999999988 6666 79999999988654 111111 11 1379999999999999999999987665
Q ss_pred eEE
Q psy10160 210 ENA 212 (558)
Q Consensus 210 ~~~ 212 (558)
...
T Consensus 204 ~~~ 206 (213)
T 3d9a_L 204 PIV 206 (213)
T ss_dssp CEE
T ss_pred ceE
Confidence 333
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.1e-15 Score=134.92 Aligned_cols=162 Identities=20% Similarity=0.211 Sum_probs=112.9
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccC-CeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES-NRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~-~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
.||.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.....++.+..+ .+|.|.+++.+|+|.|+|.+.|..
T Consensus 6 ~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 85 (192)
T 2iep_A 6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGV 85 (192)
T ss_dssp EEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSS
T ss_pred CCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCC
Confidence 5677777788888999999999999999999999999999998765556666554 469999999999999999999998
Q ss_pred cee-eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhh-hhhh
Q psy10160 207 TSD-ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAA-ADKK 284 (558)
Q Consensus 207 G~~-~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~-~~~~ 284 (558)
|.. ...+.|.|..++ .+...+ .... +.. +......|.+.|.|.+.+.|++++....... ....
T Consensus 86 ~~~~~~~~~l~v~~~p---~~~~~~---~~~~------~~~---g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~ 150 (192)
T 2iep_A 86 GGAVESCGALQVKMKP---KITRPP---INVK------IIE---GLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVL 150 (192)
T ss_dssp SCCEEEEEEEEEEEEE---EEEECC---CCEE------EET---TSCEEECCEEEEESCCEEEEEETTEECCCCSSEEEC
T ss_pred CceeEeEEEEEEEeCC---ccccCC---cceE------EeC---CCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEe
Confidence 884 566777776443 111111 1111 122 2233356666689999999999876544332 2222
Q ss_pred hcccccchhhhhhhHHHhhc
Q psy10160 285 RRSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 285 ~~grth~q~a~~~t~g~~~~ 304 (558)
..+...+..+.....|.|..
T Consensus 151 ~~~~L~i~~~~~~d~G~Y~C 170 (192)
T 2iep_A 151 ESGSLRIHNVQKEDAGQYRC 170 (192)
T ss_dssp TTSCEEESSCCGGGCEEEEE
T ss_pred cCCcEEEecCChhhCEEEEE
Confidence 33445555555555555543
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.1e-14 Score=130.84 Aligned_cols=73 Identities=16% Similarity=0.292 Sum_probs=54.4
Q ss_pred eeCCCcEEEEeEeecc----CCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee--eEEEE
Q psy10160 141 FGVGSDISIPCDVDGY----PIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD--ENAVT 214 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~----P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~--~~~~~ 214 (558)
+.+|+.++|.|.+.|. |.|.+.|++++...... . ....+.|.|..+..+|+|.|+|.|.|..+.. +..+.
T Consensus 135 ~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~~--~--~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~ 210 (214)
T 2zg1_A 135 LESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDP--E--TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQ 210 (214)
T ss_dssp CCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSCS--S--CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEE
T ss_pred ccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCCC--C--ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEE
Confidence 5689999999999874 89999999998654321 1 1355689999999999999999999987554 45555
Q ss_pred EEE
Q psy10160 215 IRV 217 (558)
Q Consensus 215 l~V 217 (558)
|.|
T Consensus 211 l~V 213 (214)
T 2zg1_A 211 LNV 213 (214)
T ss_dssp CCC
T ss_pred EEe
Confidence 544
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=136.65 Aligned_cols=86 Identities=16% Similarity=0.244 Sum_probs=60.7
Q ss_pred eEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCC---ceeeEEEEE
Q psy10160 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSY---TSDENAVTI 215 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~---G~~~~~~~l 215 (558)
..+.+|+.++|.|.+.+. .+.+.|+|+|..+... ......+++|.|.+++.+|+|.|+|.+.|.. ...+..+.|
T Consensus 111 ~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~--~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l 187 (242)
T 1p6f_A 111 PEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQ--RGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKL 187 (242)
T ss_dssp SEEETTCEEEEEEECTTS-CSEEEEEECSSSCEEE--EEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEE
T ss_pred CccCCCCcEEEEEecCCC-CCEEEEEECCCccCcc--ccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEE
Confidence 457899999999999875 4689999998766431 1112334689999999999999999999974 234677889
Q ss_pred EEeccCCCCCCC
Q psy10160 216 RVEGIFIHPSCR 227 (558)
Q Consensus 216 ~V~~~~~~p~~~ 227 (558)
.|.+++..|...
T Consensus 188 ~V~~~~~~P~l~ 199 (242)
T 1p6f_A 188 LVTGDIENTSLA 199 (242)
T ss_dssp EEEC--------
T ss_pred EEeccCCCCccc
Confidence 998766555443
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=116.41 Aligned_cols=89 Identities=18% Similarity=0.316 Sum_probs=76.2
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCC---eEEEccCCCCCCeEEEEEEEe
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~N 204 (558)
.|+.|...+.+..+.+|+.+.|.|.+ .|.|.+.|+|+|..+..++ ++.+..++ +|.|.+++.+|+|.|+|.|.|
T Consensus 6 ~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~-r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 82 (100)
T 2yuz_A 6 SGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESD-RLKVVQKGRIHKLVIANALTEDEGDYVFAPDA 82 (100)
T ss_dssp CCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCS-SEEEEECSSEEEEEESSCCGGGCSEEEEEESS
T ss_pred CCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCC-cEEEEEeCCEEEEEECCCChhhCEEEEEEEcC
Confidence 46777788889999999999999999 8999999999999997654 66655544 799999999999999999999
Q ss_pred CCceeeEEEEEEEeccC
Q psy10160 205 SYTSDENAVTIRVEGIF 221 (558)
Q Consensus 205 ~~G~~~~~~~l~V~~~~ 221 (558)
. ..+.++.|.|.++|
T Consensus 83 ~--~~~~~a~L~V~~~P 97 (100)
T 2yuz_A 83 Y--NVTLPAKVHVISGP 97 (100)
T ss_dssp S--CCCEEEEEEEECCS
T ss_pred C--CeeEEEEEEEeCCC
Confidence 8 56678888887654
|
| >1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-14 Score=137.85 Aligned_cols=86 Identities=14% Similarity=0.225 Sum_probs=61.3
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCCeEEEEE--CCEEec-----------cCCceEEEcc---CCeEEEccCCCCCCeEE
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYK--DGQVIE-----------NDGVHYRITE---SNRLHINQANATDSGEY 198 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~--~g~~l~-----------~~~~~~~~~~---~~sL~I~~v~~~D~G~Y 198 (558)
.+....+.+|+.++|.|.+.+.|.|.+.|+| ++..+. ....++.+.. ..+|.|.+++.+|+|.|
T Consensus 145 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y 224 (257)
T 1f3r_B 145 SPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATY 224 (257)
T ss_dssp ETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEE
T ss_pred cCCEEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEE
Confidence 4455668899999999999999999999999 554331 0123454332 23799999999999999
Q ss_pred EEEEEeCCceeeEEEEEEEecc
Q psy10160 199 RCVASNSYTSDENAVTIRVEGI 220 (558)
Q Consensus 199 ~C~a~N~~G~~~~~~~l~V~~~ 220 (558)
+|.|.|..........|.|.+.
T Consensus 225 ~C~a~n~~~~~g~gt~l~V~~~ 246 (257)
T 1f3r_B 225 FCYQYNNGYTFGAGTKLELKAA 246 (257)
T ss_dssp EEEEESSSEEECCCCEECCSSS
T ss_pred EEEEeCCCCeECCCEEEEEeCC
Confidence 9999997521223445666543
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-14 Score=130.14 Aligned_cols=138 Identities=19% Similarity=0.303 Sum_probs=102.2
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCC---ceEEEcc-CCeEEEccCCCCCCeEEEEEEE
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG---VHYRITE-SNRLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~---~~~~~~~-~~sL~I~~v~~~D~G~Y~C~a~ 203 (558)
.||.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.... .++.... ..+|.|.+++.+|+|.|+|.+.
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 83 (194)
T 2a38_A 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKAT 83 (194)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEE
Confidence 47788888888999999999999999999999999999998886542 1222222 2479999999999999999999
Q ss_pred eCCceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhh
Q psy10160 204 NSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAE 277 (558)
Q Consensus 204 N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~ 277 (558)
|..|.....+.|.|.....+|.+...+. .. .+.. +......|.+.|.|+|.+.|++++....
T Consensus 84 n~~~~~~~~~~l~v~~~~~~p~~~~~~~---~~------~~~~---g~~~~l~C~~~g~p~~~v~W~~~~~~~~ 145 (194)
T 2a38_A 84 NGSGQATSTAELLVKAETAPPNFVQRLQ---SM------TVRQ---GSQVRLQVRVTGIPTPVVKFYRDGAEIQ 145 (194)
T ss_dssp ETTEEEEEEEEEEEECCCEEEEEEECCC---CE------EECT---TEEEEEEEEEEEESCCEEEEEETTEECC
T ss_pred cCCceEeEEEEEEEccCCCCCEEEeCCc---cE------EEcC---CCEEEEEEEEEEecCCeEEEEECCEECC
Confidence 9999998888898875443333322110 01 1122 3344455666689999999999876543
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6.8e-14 Score=124.30 Aligned_cols=141 Identities=20% Similarity=0.214 Sum_probs=98.1
Q ss_pred cccC-ceeEEeccCCCC-CCcEEEEeCCcccCCCCce---------eeccccceeeceeEEeeccceeeEEeeeceeeeC
Q psy10160 61 IDYG-TILSSAFPSESA-SPVVTQTTTTTTEATSPHV---------YAALTHCVPWSNVCLFGARSGYLKETQNGGYLVP 129 (558)
Q Consensus 61 v~~~-~~~~~~~~~~~p-~p~v~W~~~~~~~~~~~~~---------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 129 (558)
+..| .+.+.|...+.| .+.+.|++++..+...... ..|.|.|.+.+ ..... ...+.+..+
T Consensus 16 v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~~~~~~~~~~~d~G~Y~C~~~~-------~~~s~--~~~l~v~~~ 86 (170)
T 3ry4_A 16 VLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQ-------TSLSD--PVHLTVLFE 86 (170)
T ss_dssp EETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCSSEEEEECCGGGCEEEEEEETT-------SBCCC--CEEEEEECC
T ss_pred EECCCcEEEEEEecCCCCcceEEEEECCeEcccCccceEEEecccccCeEEEEEEeC-------CCceE--eEEEEEECC
Confidence 4445 556889888886 6799999998777654322 25666666553 21111 112222334
Q ss_pred cEEEecCCceEeeCCCcEEEEeEe-eccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
+.+.. +....+.+|+.+.|.|.+ .+.|.|.+.|+++|..+... ..++.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 87 ~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 159 (170)
T 3ry4_A 87 WLVLQ-TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFS------HLDPTFSIPQANHSHSGDYHCTGNIGYTL 159 (170)
T ss_dssp SEEEE-CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEE------SSCCEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred ceEec-CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEcccc------CCCCeEEEEeccccCCEEEEEEEEeCcCc
Confidence 43333 335567899999999999 45677899999999887532 24568999999999999999999999997
Q ss_pred -eeEEEEEEE
Q psy10160 209 -DENAVTIRV 217 (558)
Q Consensus 209 -~~~~~~l~V 217 (558)
.+..+.|.|
T Consensus 160 ~~s~~~~l~V 169 (170)
T 3ry4_A 160 FSSKPVTITV 169 (170)
T ss_dssp EECCCEEEEE
T ss_pred cccccEEEEE
Confidence 456667766
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.6e-14 Score=111.22 Aligned_cols=87 Identities=29% Similarity=0.512 Sum_probs=74.6
Q ss_pred EEecCCceEeeCCCcEEEEeEeecc-CCCeEEEEECCEEeccCCceEEE-ccCC--eEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGY-PIPQVFWYKDGQVIENDGVHYRI-TESN--RLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~-P~p~i~W~~~g~~l~~~~~~~~~-~~~~--sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
+...+....+.+|+.+.|.|.+.|. |.|.+.|+|++..+..+. ++.+ ..++ +|.|.+++.+|+|.|+|.|.|..|
T Consensus 4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 82 (97)
T 2bk8_A 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSE-KYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYG 82 (97)
T ss_dssp EECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSS-SEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred eeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCC-CEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCC
Confidence 3455678889999999999999997 999999999999887654 4444 2344 899999999999999999999999
Q ss_pred eeeEEEEEEEec
Q psy10160 208 SDENAVTIRVEG 219 (558)
Q Consensus 208 ~~~~~~~l~V~~ 219 (558)
.....+.|.|.+
T Consensus 83 ~~~~~~~l~V~~ 94 (97)
T 2bk8_A 83 EDSSYAELFVKG 94 (97)
T ss_dssp EEEEEEEEEETT
T ss_pred eEeEEEEEEEEe
Confidence 999999999864
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.7e-14 Score=125.83 Aligned_cols=61 Identities=13% Similarity=0.358 Sum_probs=48.3
Q ss_pred CcEEEEeEe-eccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEE
Q psy10160 145 SDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTI 215 (558)
Q Consensus 145 ~~v~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 215 (558)
+.+.|.|.+ .| |.|.+.|++++..+.. ..+.+|.+.. .+|+|.|+|.|.|..|.......+
T Consensus 116 ~~v~L~C~~~~g-p~p~i~W~~~~~~l~~-------~~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i 177 (180)
T 2dru_A 116 SNATLTCEVLEG-TDVELKLYQGKEHLRS-------LRQKTMSYQW--TNLRAPFKCKAVNRVSQESEMEVV 177 (180)
T ss_dssp GGTEEEEECSSC-TTCEEEEEETTEEEEE-------ESSSEEEEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred CCEEEEEEeCCC-CCCEEEEEECCeECcC-------CCCCEEEEEE--hhcCccEEEEEecCcCccccceeE
Confidence 458999999 66 9999999999988751 2345677633 789999999999999988765443
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-14 Score=124.98 Aligned_cols=118 Identities=12% Similarity=0.178 Sum_probs=84.6
Q ss_pred cCCceEe--cCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEE
Q psy10160 5 RSENYEL--NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQ 82 (558)
Q Consensus 5 ~~~r~~~--~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W 82 (558)
+.+|+.+ .+++|.|.+++.+|+|.|+|.+.|..| ...+.|.|..++.. |.+.+
T Consensus 49 ~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~~-~~~~~L~V~~~~~~------------------------p~i~~ 103 (171)
T 1ccz_A 49 FKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITD-TMKFFLYVLEMVSK------------------------PMIYW 103 (171)
T ss_dssp GTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCCS-CEEEEEEEECCCCC------------------------CEEEE
T ss_pred cCCcEEEeCCCCeEEECCCChhhCceEEEEEeCCCC-cEEEEEEEECcCCC------------------------CEEEE
Confidence 3456665 678999999999999999999999887 44556666543211 11111
Q ss_pred EeCCcccCCCCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEE
Q psy10160 83 TTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVF 162 (558)
Q Consensus 83 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~ 162 (558)
.... ..|.|.+.|.|.|.+.
T Consensus 104 ----------------------------------------------------~~~~--------~~L~C~~~~~p~p~i~ 123 (171)
T 1ccz_A 104 ----------------------------------------------------ECSN--------ATLTCEVLEGTDVELK 123 (171)
T ss_dssp ----------------------------------------------------ETTT--------TEEEEECSSCSSCEEE
T ss_pred ----------------------------------------------------ecCC--------cEEEEEeCCCCCcEEE
Confidence 1110 2799999999999999
Q ss_pred EEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy10160 163 WYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216 (558)
Q Consensus 163 W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 216 (558)
|++++..+... ....|.+. ..+|+|.|+|.|.|..|..+..+.|.
T Consensus 124 W~~~~~~l~~~-------~~~~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l~ 168 (171)
T 1ccz_A 124 LYQGKEHLRSL-------RQKTMSYQ--WTNLRAPFKCKAVNRVSQESEMEVVN 168 (171)
T ss_dssp EEETTEEEEEE-------SSSEEEEE--CSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred EEECCEECcCC-------cceEEEEe--ccCCCceEEEEEEcccCcccceeEEe
Confidence 99999887632 22344444 37899999999999999987766553
|
| >1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=4e-14 Score=130.80 Aligned_cols=72 Identities=13% Similarity=0.193 Sum_probs=53.3
Q ss_pred eeCCCcEEEEeEeeccCCC--eEEEEECCEEeccCCc--eEEEccC------CeEEEccCCCCCCeEEEEEEEeCCceee
Q psy10160 141 FGVGSDISIPCDVDGYPIP--QVFWYKDGQVIENDGV--HYRITES------NRLHINQANATDSGEYRCVASNSYTSDE 210 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~P~p--~i~W~~~g~~l~~~~~--~~~~~~~------~sL~I~~v~~~D~G~Y~C~a~N~~G~~~ 210 (558)
+..|+.+.|.|.+.|.|+| .+.|+|+|..+..+.. ......+ ..|.|.++..+|+|.|+|.|.|......
T Consensus 127 ~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~ 206 (212)
T 1q0x_L 127 ELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSN 206 (212)
T ss_dssp HHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEE
T ss_pred HccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCccee
Confidence 4578999999999986544 7999999998865311 0111222 2588999999999999999999876644
Q ss_pred EE
Q psy10160 211 NA 212 (558)
Q Consensus 211 ~~ 212 (558)
.+
T Consensus 207 ~~ 208 (212)
T 1q0x_L 207 KT 208 (212)
T ss_dssp EE
T ss_pred ee
Confidence 43
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-14 Score=130.15 Aligned_cols=161 Identities=17% Similarity=0.251 Sum_probs=111.0
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccC-CCeEEEEE-CCEEeccCCceEEEc----cCCeEEEccCCCCCCeEEEEEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYP-IPQVFWYK-DGQVIENDGVHYRIT----ESNRLHINQANATDSGEYRCVA 202 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P-~p~i~W~~-~g~~l~~~~~~~~~~----~~~sL~I~~v~~~D~G~Y~C~a 202 (558)
|+.+...+.+..+.+|+.+.|.|.+.+.| .|.+.|++ ++..+.....++.+. .+++|.|.+++.+|+|.|+|.+
T Consensus 2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (191)
T 1epf_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81 (191)
T ss_dssp -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence 56677788899999999999999999987 78999999 888887554455553 3458999999999999999999
Q ss_pred EeCC-ceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhh-
Q psy10160 203 SNSY-TSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAA- 280 (558)
Q Consensus 203 ~N~~-G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~- 280 (558)
.|.. +..+..+.|.|..++ .+...+. . ..+.. +......|.+.|.|+|.+.|++++.......
T Consensus 82 ~~~~~~~~~~~~~l~v~~~p---~~~~~~~---~------~~~~~---g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~ 146 (191)
T 1epf_A 82 TAEDGTQSEATVNVKIFQKL---MFKNAPT---P------QEFKE---GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD 146 (191)
T ss_dssp EETTTEEEEEEEEEEEECCS---EEEECCS---S------EECCT---TSCEEECCEEECSSCCEEEEEETTEEGGGGCC
T ss_pred EcCCCcceEEEEEEEeecCc---eEecCCC---c------EeecC---CCeEEEEEEECCCCCCEEEEEECCEEeeccCC
Confidence 9998 555677888885432 2221110 0 01122 3334466777789999999999976654322
Q ss_pred h--hhhhcccccchhhhhhhHHHhhc
Q psy10160 281 A--DKKRRSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 281 ~--~~~~~grth~q~a~~~t~g~~~~ 304 (558)
. .....+...+..+.....|.|..
T Consensus 147 ~~~~~~~~~~L~i~~~~~~d~G~Y~C 172 (191)
T 1epf_A 147 VRFIVLSNNYLQIRGIKKTDEGTYRC 172 (191)
T ss_dssp TTEEECTTSCEEETTCCGGGCEEEEE
T ss_pred ceEEEecCCeEEECCCChhhCEEEEE
Confidence 1 11223345555666666665544
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-14 Score=112.07 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=71.4
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCC---eEEEccCCCCCCeEEEEEEEe
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~N 204 (558)
.|+.|...+.+..+.+|+.+.|.|.+.+ |.|.+.|+|+|..+..++ ++.+..++ +|.|.+++.+|+|.|+|.|.|
T Consensus 4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~-~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n 81 (93)
T 1waa_A 4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASP-DCEIIEDGKKHILILHNCQLGMTGEVSFQAAN 81 (93)
T ss_dssp CCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBT-TEEEEEETTEEEEEECSCCGGGCEEEEEEETT
T ss_pred CCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCC-CEEEEEECCEEEEEECCCChhhCEEEEEEECC
Confidence 4677888888999999999999999987 558899999999997654 55555443 799999999999999999988
Q ss_pred CCceeeEEEEEEEec
Q psy10160 205 SYTSDENAVTIRVEG 219 (558)
Q Consensus 205 ~~G~~~~~~~l~V~~ 219 (558)
. ..++.|.|.+
T Consensus 82 ~----~~sa~L~V~~ 92 (93)
T 1waa_A 82 T----KSAANLKVKE 92 (93)
T ss_dssp E----EEEEEEEEEC
T ss_pred C----cEEEEEEEEc
Confidence 4 3566777754
|
| >1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-14 Score=132.13 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=51.7
Q ss_pred eeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccC-CceEE--EccC------CeEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 141 FGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIEND-GVHYR--ITES------NRLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~-~~~~~--~~~~------~sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
+.+|+.+.|.|.+.|. |.| .+.|+|+|..+... ..... ...+ ++|.|.++..+|+|.|+|.|.|.....
T Consensus 123 ~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 202 (210)
T 1lk3_L 123 QLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS 202 (210)
T ss_dssp HHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred hccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence 3479999999999984 554 79999999987654 11111 1112 269999999999999999999987644
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X | Back alignment and structure |
|---|
Probab=99.52 E-value=5.3e-14 Score=113.81 Aligned_cols=80 Identities=23% Similarity=0.496 Sum_probs=66.8
Q ss_pred eCCCcEEEEeEeeccCCCeEEEEECCEEeccCCce-E--EEcc----CCeEEEccCCCCCCeEEEEEEEeCCceeeEEEE
Q psy10160 142 GVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH-Y--RITE----SNRLHINQANATDSGEYRCVASNSYTSDENAVT 214 (558)
Q Consensus 142 ~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~-~--~~~~----~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 214 (558)
..|+.+.|.|.+.|+|.|.+.|+|+|..+..+... . .... .++|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 93 (103)
T 1wwb_X 14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS 93 (103)
T ss_dssp CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence 45788999999999999999999999998875421 1 1112 234999999999999999999999999999999
Q ss_pred EEEeccC
Q psy10160 215 IRVEGIF 221 (558)
Q Consensus 215 l~V~~~~ 221 (558)
|.|.++|
T Consensus 94 l~V~~~P 100 (103)
T 1wwb_X 94 AHFMGWP 100 (103)
T ss_dssp ECCSCCC
T ss_pred EEECCCC
Confidence 9997654
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=9.9e-14 Score=131.57 Aligned_cols=79 Identities=16% Similarity=0.268 Sum_probs=49.1
Q ss_pred eeCCCcEEEEeEeec-cCCC-eEEEEECCEEeccC-----C---ceEEEcc------CCeEEEccCCCCCCeEEEEEEEe
Q psy10160 141 FGVGSDISIPCDVDG-YPIP-QVFWYKDGQVIEND-----G---VHYRITE------SNRLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 141 v~~G~~v~L~C~~~g-~P~p-~i~W~~~g~~l~~~-----~---~~~~~~~------~~sL~I~~v~~~D~G~Y~C~a~N 204 (558)
+..|+.+.|.|.+.| +|.| .+.|++++..+... . ....... ...|.|.....+|.|.|+|.|.|
T Consensus 130 ~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n 209 (248)
T 3pv7_A 130 GMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRH 209 (248)
T ss_dssp ------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEEC
T ss_pred cccCCCcEEEEEEccEECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEEC
Confidence 345777889999999 8999 99999998643211 0 0111111 13688889999999999999999
Q ss_pred CCcee--eEEEEEEEec
Q psy10160 205 SYTSD--ENAVTIRVEG 219 (558)
Q Consensus 205 ~~G~~--~~~~~l~V~~ 219 (558)
..+.. ...+.|.|..
T Consensus 210 ~~~~~~~~~~v~l~V~~ 226 (248)
T 3pv7_A 210 ASLHTPLRSNFTLTAAR 226 (248)
T ss_dssp TTCSSCEEEEECC----
T ss_pred CCCCCCcEEEEEEEEcC
Confidence 98874 5667777743
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A | Back alignment and structure |
|---|
Probab=99.52 E-value=9.6e-15 Score=118.94 Aligned_cols=90 Identities=26% Similarity=0.529 Sum_probs=78.9
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEcc---CCeEEEccCCCCCCeEEEEEEEe
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE---SNRLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~---~~sL~I~~v~~~D~G~Y~C~a~N 204 (558)
.++.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+..+. ++.+.. +++|.|.+++.+|+|.|+|.|.|
T Consensus 13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 91 (106)
T 1nct_A 13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA-RHQVTTTKYKSTFEISSVQASDEGNYSVVVEN 91 (106)
T ss_dssp CCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCS-SEEEEECSSEEEEEECCCCSSCCSEEEECCBC
T ss_pred CCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCC-CEEEEECCCEEEEEECcCCchhCEEEEEEEEe
Confidence 46778888889999999999999999999999999999998887644 554443 35899999999999999999999
Q ss_pred CCceeeEEEEEEEe
Q psy10160 205 SYTSDENAVTIRVE 218 (558)
Q Consensus 205 ~~G~~~~~~~l~V~ 218 (558)
..|..+..+.|.|.
T Consensus 92 ~~G~~~~~~~l~V~ 105 (106)
T 1nct_A 92 SEGKQEAEFTLTIQ 105 (106)
T ss_dssp SSCBCCEEEEEEEC
T ss_pred CCCeEEEEEEEEEE
Confidence 99999999999884
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=99.52 E-value=8.2e-14 Score=137.32 Aligned_cols=204 Identities=15% Similarity=0.098 Sum_probs=122.7
Q ss_pred CCCCccccC-ceeEEeccCCCCCCcEEEEeCCcccCCC---------------CceeeccccceeeceeEEe--ecccee
Q psy10160 56 ADPNAIDYG-TILSSAFPSESASPVVTQTTTTTTEATS---------------PHVYAALTHCVPWSNVCLF--GARSGY 117 (558)
Q Consensus 56 ~~~~~v~~~-~~~~~~~~~~~p~p~v~W~~~~~~~~~~---------------~~~~~g~~~~~~~~~~~~~--~~~~~~ 117 (558)
.+...+..| .+.+.|...+. .+.+.|++++..+... .....|.|.|.+.+..... ......
T Consensus 30 ~p~~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~ 108 (316)
T 3vh8_G 30 WPSAVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNP 108 (316)
T ss_dssp ESCSEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCC
T ss_pred cCCCccCCCCCEEEEEEccCC-CceEEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCc
Confidence 333345455 56688888777 7899999998765431 1112566776654321100 011111
Q ss_pred eEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEE---ccCCeEEEccCCCCC
Q psy10160 118 LKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI---TESNRLHINQANATD 194 (558)
Q Consensus 118 ~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~---~~~~sL~I~~v~~~D 194 (558)
+....... ..+|.+...+... +.+|+.++|.|.+.+ |.+.+.|+|++..+......... ..++.|.|.+++.+|
T Consensus 109 ~~l~V~~~-~~~p~~~~~~~~~-v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D 185 (316)
T 3vh8_G 109 VVIMVTGN-HRKPSLLAHPGPL-VKSGERVILQCWSDI-MFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLAL 185 (316)
T ss_dssp EEEEEECS-SCCCEEEEESCSE-EETTCCEEEEEEESS-CCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGG
T ss_pred EEEEEecC-CCCCeEEecCCCc-cCCCCeEEEEEcCCC-CCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhh
Confidence 22211111 1245555555544 789999999999954 66789999999876432111111 123579999999999
Q ss_pred CeEEEEEEEeCCcee-----eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccc
Q psy10160 195 SGEYRCVASNSYTSD-----ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPH 269 (558)
Q Consensus 195 ~G~Y~C~a~N~~G~~-----~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w 269 (558)
+|.|+|.|.|..|.. +..+.|.|.+.+.+|.+...+ ...+..|....+.|. +. .+.+.+.|
T Consensus 186 ~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~----------~~~v~~G~~v~L~C~---~~-~~~~~~~W 251 (316)
T 3vh8_G 186 AGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQP----------GPKVQAGESVTLSCS---SR-SSYDMYHL 251 (316)
T ss_dssp CEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEES----------CSCCCTTSCCEEEEE---ES-SCCSEEEE
T ss_pred CceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCC----------CCeecCCCcEEEEEE---CC-CCCcEEEE
Confidence 999999999998742 566778887654444332211 112233444555554 42 57788999
Q ss_pred cchhhhhh
Q psy10160 270 IKRAVEAE 277 (558)
Q Consensus 270 ~~~~l~~~ 277 (558)
++++....
T Consensus 252 ~k~g~~~~ 259 (316)
T 3vh8_G 252 SREGGAHE 259 (316)
T ss_dssp EETTSSCC
T ss_pred EECCCcCC
Confidence 99976543
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.8e-14 Score=117.05 Aligned_cols=99 Identities=20% Similarity=0.329 Sum_probs=77.0
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeecc---CCCeEEEEECCE-Eec-cCCceEEEcc---------CCeEEEccCCCCCC
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDGY---PIPQVFWYKDGQ-VIE-NDGVHYRITE---------SNRLHINQANATDS 195 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g~---P~p~i~W~~~g~-~l~-~~~~~~~~~~---------~~sL~I~~v~~~D~ 195 (558)
+.|...|.+..+.+|+.++|.|.+.|. |.|.|.|+|+.. .+. ..+.++.+.. +.+|.|.+++.+|+
T Consensus 8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da 87 (126)
T 2dav_A 8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA 87 (126)
T ss_dssp CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence 456677888999999999999999875 899999999641 111 1122343321 35799999999999
Q ss_pred eEEEEEEEeCCceeeEEEEEEEec-cCCCCCCCC
Q psy10160 196 GEYRCVASNSYTSDENAVTIRVEG-IFIHPSCRD 228 (558)
Q Consensus 196 G~Y~C~a~N~~G~~~~~~~l~V~~-~~~~p~~~~ 228 (558)
|.|+|+|.|..|..+..+.|.|.. ++..|.+..
T Consensus 88 G~Y~Cevsn~~g~~~~~~~L~V~~~~~~~p~~~i 121 (126)
T 2dav_A 88 GNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDS 121 (126)
T ss_dssp EEEEEEEECSSCEEEECCEEEEECCCCSCCCCCC
T ss_pred EEEEEEEEeCCCcEEEEEEEEEEecCCCCCeEEe
Confidence 999999999999999999999987 665555443
|
| >1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=6.4e-14 Score=135.75 Aligned_cols=91 Identities=15% Similarity=0.312 Sum_probs=64.1
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEE--CCEEec-----------cCCceEEEc---cCCeEEEccCCC
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYK--DGQVIE-----------NDGVHYRIT---ESNRLHINQANA 192 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~--~g~~l~-----------~~~~~~~~~---~~~sL~I~~v~~ 192 (558)
++.+...+....+.+|+.++|.|.+.+.| |.+.|+| ++..+. ....++... ...+|.|.+++.
T Consensus 162 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 240 (282)
T 1qok_A 162 ENVLTQSPAIMSASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEA 240 (282)
T ss_dssp CCCEEEECSEEEECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred ceEEecCCCEEEEcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCCh
Confidence 33444456667789999999999999999 9999999 554431 012355433 234799999999
Q ss_pred CCCeEEEEEEEeCCcee-eEEEEEEEecc
Q psy10160 193 TDSGEYRCVASNSYTSD-ENAVTIRVEGI 220 (558)
Q Consensus 193 ~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~ 220 (558)
+|+|.|+|.|.|..+.. .....|.|.+.
T Consensus 241 ~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~ 269 (282)
T 1qok_A 241 EDAATYYCQQRSSYPLTFGAGTKLELKRA 269 (282)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEC--
T ss_pred hHCEEEEEEEeeCCCceEeCCEEEEEecc
Confidence 99999999999864432 34456777543
|
| >2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ... | Back alignment and structure |
|---|
Probab=99.51 E-value=6.9e-14 Score=129.65 Aligned_cols=69 Identities=17% Similarity=0.311 Sum_probs=51.7
Q ss_pred eCCCcEEEEeEeec-cCCC-eEEEEECCEEeccC-CceEEE--ccC------CeEEEccCCCCCCeEEEEEEEeCCceee
Q psy10160 142 GVGSDISIPCDVDG-YPIP-QVFWYKDGQVIEND-GVHYRI--TES------NRLHINQANATDSGEYRCVASNSYTSDE 210 (558)
Q Consensus 142 ~~G~~v~L~C~~~g-~P~p-~i~W~~~g~~l~~~-~~~~~~--~~~------~sL~I~~v~~~D~G~Y~C~a~N~~G~~~ 210 (558)
..|+.+.|.|.+.| .|.| .|.|+|+|..+... ...... ..+ +.|.|.++..+|+|.|+|.|.|......
T Consensus 127 ~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~ 206 (216)
T 2xzc_L 127 LKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP 206 (216)
T ss_dssp HHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred ccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCc
Confidence 36889999999998 5555 89999999987653 111111 112 2689999999999999999999876544
|
| >1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ... | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-14 Score=132.81 Aligned_cols=72 Identities=19% Similarity=0.334 Sum_probs=54.8
Q ss_pred eeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccC-------CceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeE
Q psy10160 141 FGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIEND-------GVHYRITESNRLHINQANATDSGEYRCVASNSYTSDEN 211 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~-------~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~ 211 (558)
+.+|+.+.|.|.+.|. |.| .+.|+++|..+... +..|.. .+.|.|.++..+| |.|+|.|.|..|....
T Consensus 139 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~ 215 (222)
T 1q9r_B 139 AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTL--SSSVTVPSSTWPS-ETVTCNVAHPASSTKV 215 (222)
T ss_dssp CCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEEEEEEETTEEEE--EEEEEEETTTTTT-SCCEEEEEEGGGTEEE
T ss_pred ccCCCcEEEEEEEccEECCCCEEEEecCCeEcceEeccccccCCcEEE--EEEEEECchhcCC-CeEEEEEEccCCCCcE
Confidence 5679999999999996 988 99999998765321 011211 2368999999999 9999999999987655
Q ss_pred EEEE
Q psy10160 212 AVTI 215 (558)
Q Consensus 212 ~~~l 215 (558)
...+
T Consensus 216 ~~~i 219 (222)
T 1q9r_B 216 DKKI 219 (222)
T ss_dssp EEEC
T ss_pred EEec
Confidence 4443
|
| >1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H | Back alignment and structure |
|---|
Probab=99.51 E-value=8.7e-14 Score=132.76 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=60.5
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCC-----eEEEEE--CCEEec-----------cCCceEEEcc---CCeEEEccCCCC
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIP-----QVFWYK--DGQVIE-----------NDGVHYRITE---SNRLHINQANAT 193 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p-----~i~W~~--~g~~l~-----------~~~~~~~~~~---~~sL~I~~v~~~ 193 (558)
.+....+.+|+.++|.|.+.+.|.| .+.|+| ++..+. ....++.... ..+|.|.+++.+
T Consensus 127 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 206 (256)
T 1nqb_A 127 TPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAE 206 (256)
T ss_dssp ECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred cCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChH
Confidence 4455678899999999999999876 899999 554331 0123444322 247999999999
Q ss_pred CCeEEEEEEEeCCcee-eEEEEEEEe
Q psy10160 194 DSGEYRCVASNSYTSD-ENAVTIRVE 218 (558)
Q Consensus 194 D~G~Y~C~a~N~~G~~-~~~~~l~V~ 218 (558)
|+|.|+|.|.|..+.. .....|.|.
T Consensus 207 DsG~Y~C~a~~~~~~~fg~gt~l~V~ 232 (256)
T 1nqb_A 207 DLGVYYCFQGSHVPYTFGGGTKLEIK 232 (256)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred HCEEEEEEEccCCceEECCCEEEEEE
Confidence 9999999999864433 234567774
|
| >3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ... | Back alignment and structure |
|---|
Probab=99.51 E-value=3.3e-14 Score=131.28 Aligned_cols=85 Identities=12% Similarity=0.170 Sum_probs=59.8
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccC--CCeEEEEECCEEeccCCc--eEEEccC------CeEEEccCCCCCCeEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYP--IPQVFWYKDGQVIENDGV--HYRITES------NRLHINQANATDSGEY 198 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~g~~l~~~~~--~~~~~~~------~sL~I~~v~~~D~G~Y 198 (558)
+|.+...+....+.+|+.+.|.|.+.|.| .|.+.|+|+|..+..... ......+ ..|.|.++..+|+|.|
T Consensus 111 ~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y 190 (211)
T 3tv3_L 111 APSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSY 190 (211)
T ss_dssp CCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCE
T ss_pred CCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence 34444444444445799999999999963 578999999998864210 0111111 3589999999999999
Q ss_pred EEEEEeCCceeeEEE
Q psy10160 199 RCVASNSYTSDENAV 213 (558)
Q Consensus 199 ~C~a~N~~G~~~~~~ 213 (558)
+|.|.|..+....++
T Consensus 191 ~C~v~~~~~~~~~~~ 205 (211)
T 3tv3_L 191 SCQVTHEGSTVEKTV 205 (211)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred EEEEEECCCCEEeec
Confidence 999999987766554
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=111.44 Aligned_cols=89 Identities=21% Similarity=0.458 Sum_probs=72.6
Q ss_pred CcEEEecC----CceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCc--eEEE-ccCCeEEEccCCCCCCeEEEEE
Q psy10160 129 PVKVNITL----ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV--HYRI-TESNRLHINQANATDSGEYRCV 201 (558)
Q Consensus 129 p~~~~~~~----~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~--~~~~-~~~~sL~I~~v~~~D~G~Y~C~ 201 (558)
||.+...+ ....+.+|+.+.|.|.+.|.|.|.+.|+|++..+..... .+.. ..+++|.|.+++.+|+|.|+|.
T Consensus 4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 83 (100)
T 3caf_A 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 83 (100)
T ss_dssp EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEE
T ss_pred CCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEE
Confidence 55555433 456788999999999999999999999999998865421 1222 3345899999999999999999
Q ss_pred EEeCCceeeEEEEEEE
Q psy10160 202 ASNSYTSDENAVTIRV 217 (558)
Q Consensus 202 a~N~~G~~~~~~~l~V 217 (558)
|.|..|.....+.|.|
T Consensus 84 a~N~~g~~~~~~~l~V 99 (100)
T 3caf_A 84 VENEYGSINHTYHLDV 99 (100)
T ss_dssp EEETTEEEEEEEEEEE
T ss_pred EEeCCCEEEEEEEEEE
Confidence 9999999998888887
|
| >1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-14 Score=132.44 Aligned_cols=73 Identities=19% Similarity=0.302 Sum_probs=51.8
Q ss_pred EeeCCCcEEEEeEeec-cCCC-eEEEEECCEEeccC--C-----ceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceee
Q psy10160 140 VFGVGSDISIPCDVDG-YPIP-QVFWYKDGQVIEND--G-----VHYRITESNRLHINQANATDSGEYRCVASNSYTSDE 210 (558)
Q Consensus 140 ~v~~G~~v~L~C~~~g-~P~p-~i~W~~~g~~l~~~--~-----~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~ 210 (558)
.+.+|+.+.|.|.+.| +|.| .|.|++++..+... . ..|. ..+.|.|... ..|.|.|+|.|.|..|...
T Consensus 135 ~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~--~~s~L~i~~~-~~d~g~Y~C~a~n~~~~~~ 211 (219)
T 1c1e_H 135 AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYT--LSSSVTVPSS-PRPSETVTCNVAHPASSTK 211 (219)
T ss_dssp SSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEESSSCEE--EEEEEEEESS-STTTSCCEEEEEEGGGTEE
T ss_pred ccccCCeEEEEEEcccccCCCeEEEEEeCCcccceEecCCcccCCeEE--EEEEEEEecc-cCCCCEEEEEEEeCCCCcc
Confidence 3568999999999999 8999 99999998764211 1 1111 1136888444 4466999999999988765
Q ss_pred EEEEE
Q psy10160 211 NAVTI 215 (558)
Q Consensus 211 ~~~~l 215 (558)
....+
T Consensus 212 ~~~~i 216 (219)
T 1c1e_H 212 VDKKI 216 (219)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 54443
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.50 E-value=8.1e-14 Score=144.32 Aligned_cols=192 Identities=12% Similarity=0.141 Sum_probs=114.2
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEE----------------e--CCCCccCCCCc---ccc-CceeEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQ----------------A--LPSEKVADPNA---IDY-GTILSSA 70 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~----------------~--~p~~~~~~~~~---v~~-~~~~~~~ 70 (558)
+.|.|.+++.+| |.|+|.|.|..|... ...+.+. . .|.....+|.. +.. ..+.+.|
T Consensus 184 s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C 262 (444)
T 1igt_B 184 SSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTC 262 (444)
T ss_dssp EEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEE
T ss_pred EEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEE
Confidence 569999999999 999999999988752 3333221 0 12111223322 233 4567889
Q ss_pred ccCCCC----CCcEEEEeCCcccCCCCcee-----eccc---ccee---------eceeEEeeccceee--EEeeec--e
Q psy10160 71 FPSESA----SPVVTQTTTTTTEATSPHVY-----AALT---HCVP---------WSNVCLFGARSGYL--KETQNG--G 125 (558)
Q Consensus 71 ~~~~~p----~p~v~W~~~~~~~~~~~~~~-----~g~~---~~~~---------~~~~~~~~~~~~~~--~~~~~~--~ 125 (558)
.+.+.+ .+.++|++++..+....... .+.+ ..+. -.|.|.+.+..+.. ...... .
T Consensus 263 ~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~ 342 (444)
T 1igt_B 263 VVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKG 342 (444)
T ss_dssp EEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCC
T ss_pred EEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCC
Confidence 888874 36899999987664322110 0100 0111 13566666665433 111111 3
Q ss_pred eeeCcEEEecCCceEeeCCCcEEEEeEeec-cCCC-eEEEEECCEEeccCC-ceEEEccCC------eEEEccCCCCCCe
Q psy10160 126 YLVPVKVNITLETQVFGVGSDISIPCDVDG-YPIP-QVFWYKDGQVIENDG-VHYRITESN------RLHINQANATDSG 196 (558)
Q Consensus 126 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g-~P~p-~i~W~~~g~~l~~~~-~~~~~~~~~------sL~I~~v~~~D~G 196 (558)
+..+|.+...+.......++.++|.|.+.| +|.| .|.|+|+|..+.... .......++ .|.|.....+|.|
T Consensus 343 ~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g 422 (444)
T 1igt_B 343 SVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERN 422 (444)
T ss_dssp CCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCC
T ss_pred CCCCCEEEEeCCChHHccCCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEEChHHhcCCC
Confidence 446777665443322223445999999999 5666 899999998874311 111123334 3566666677899
Q ss_pred EEEEEEEeCC
Q psy10160 197 EYRCVASNSY 206 (558)
Q Consensus 197 ~Y~C~a~N~~ 206 (558)
.|+|.|.|..
T Consensus 423 ~YtC~a~n~~ 432 (444)
T 1igt_B 423 SYSCSVVHEG 432 (444)
T ss_dssp CEEEEEECTT
T ss_pred eEEEEEECCC
Confidence 9999999975
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A | Back alignment and structure |
|---|
Probab=99.50 E-value=6e-14 Score=128.62 Aligned_cols=65 Identities=15% Similarity=0.255 Sum_probs=49.6
Q ss_pred eEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEc---cCCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT---ESNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~---~~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
..+.+|+.++|.|.+.+ |.|.+.|+|+|..+.......... .+++|.|.+++ |+|.|+|.|.|..
T Consensus 117 ~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~ 184 (201)
T 1nkr_A 117 PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFHD 184 (201)
T ss_dssp SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence 36789999999999987 668999999998765322111111 14579999998 9999999999763
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X | Back alignment and structure |
|---|
Probab=99.50 E-value=8.8e-14 Score=115.36 Aligned_cols=80 Identities=21% Similarity=0.414 Sum_probs=67.6
Q ss_pred CCCcEEEEeEeeccCCCeEEEEECCEEeccCCceE-EEc--------cCCeEEEccCCCCCCeEEEEEEEeCCceeeEEE
Q psy10160 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHY-RIT--------ESNRLHINQANATDSGEYRCVASNSYTSDENAV 213 (558)
Q Consensus 143 ~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~-~~~--------~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 213 (558)
.+..+.|.|.+.|+|.|.|+|+|||.++..+...+ ... ..++|.|.+++.+|+|.|+|.|.|..|....++
T Consensus 14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~ 93 (126)
T 1he7_A 14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI 93 (126)
T ss_dssp CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEE
Confidence 67789999999999999999999999998755322 111 135799999999999999999999999999999
Q ss_pred EEEEeccCC
Q psy10160 214 TIRVEGIFI 222 (558)
Q Consensus 214 ~l~V~~~~~ 222 (558)
.|.|...|.
T Consensus 94 ~l~v~~~P~ 102 (126)
T 1he7_A 94 MAAFMDNPF 102 (126)
T ss_dssp EECCCSCTT
T ss_pred EEEEEcCCC
Confidence 999876553
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=129.30 Aligned_cols=134 Identities=19% Similarity=0.209 Sum_probs=97.2
Q ss_pred eCcEEEecC----CceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCc---eEEEccCCeEEEccCCCCCCeEEEE
Q psy10160 128 VPVKVNITL----ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV---HYRITESNRLHINQANATDSGEYRC 200 (558)
Q Consensus 128 ~p~~~~~~~----~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~---~~~~~~~~sL~I~~v~~~D~G~Y~C 200 (558)
.+|.+...+ ....+.+|+.+.|.|.+.|.|.|.+.|+|++..+..... ......+.+|.|.+++.+|+|.|+|
T Consensus 14 ~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 93 (231)
T 3ojm_B 14 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 93 (231)
T ss_dssp EEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred cCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEE
Confidence 466665554 678899999999999999999999999999998865321 1223345689999999999999999
Q ss_pred EEEeCCceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccc
Q psy10160 201 VASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIK 271 (558)
Q Consensus 201 ~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~ 271 (558)
.+.|..|.....+.|.|...+..+.......... ..+ .. +......|.+.+.|++.+.|++
T Consensus 94 ~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~-~~~------~~---g~~~~l~C~~~~~p~p~v~W~~ 154 (231)
T 3ojm_B 94 VVENEYGSINHTYHLDVVERSRHRPILQAGLPAN-AST------VV---GGDVEFVCKVYSDAQPHIQWIK 154 (231)
T ss_dssp EEEETTEEEEEEEEEEEECCCCCCCEECTTCSCC-EEE------ET---TCCEEEECCEECSSCCEEEEEE
T ss_pred EEecccCcccccEEEEEEcCCCCCCceeeccCCc-eEE------Ee---CCcEEEEEEEecCCCCEEEEEE
Confidence 9999999998899999976543222211111111 111 12 3334466777789999999999
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-13 Score=142.42 Aligned_cols=192 Identities=13% Similarity=0.147 Sum_probs=114.5
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEe--------------------CCCCccCCCCc--cccC-ceeEEec
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQA--------------------LPSEKVADPNA--IDYG-TILSSAF 71 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~--------------------~p~~~~~~~~~--v~~~-~~~~~~~ 71 (558)
.|.|.++..+|+|.|+|.|.|..+...+..+.+.+ .|.....+|.. +..| .+.+.|.
T Consensus 191 ~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~ 270 (475)
T 1iga_A 191 QLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCT 270 (475)
T ss_pred EEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEE
Confidence 58899999999999999999988754444444322 11111222221 2344 5668888
Q ss_pred cCCCCC---CcEEEEeCCcccCCCCc-----eeecccc---cee---------eceeEEeeccceeeEEeeec---eeee
Q psy10160 72 PSESAS---PVVTQTTTTTTEATSPH-----VYAALTH---CVP---------WSNVCLFGARSGYLKETQNG---GYLV 128 (558)
Q Consensus 72 ~~~~p~---p~v~W~~~~~~~~~~~~-----~~~g~~~---~~~---------~~~~~~~~~~~~~~~~~~~~---~~~~ 128 (558)
+.+.++ +.++| ++........ ...|.|. .+. -.|.|.+.+..+........ .+..
T Consensus 271 ~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~ 348 (475)
T 1iga_A 271 LTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTF 348 (475)
T ss_pred EEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCC
Confidence 887644 68999 3333221100 0011110 011 13466666665433221111 2245
Q ss_pred CcEEEecCCc-eEeeCCCcEEEEeEeeccCC--CeEEEEECCEEeccCCc---eEEEc---cCC------eEEEccCCCC
Q psy10160 129 PVKVNITLET-QVFGVGSDISIPCDVDGYPI--PQVFWYKDGQVIENDGV---HYRIT---ESN------RLHINQANAT 193 (558)
Q Consensus 129 p~~~~~~~~~-~~v~~G~~v~L~C~~~g~P~--p~i~W~~~g~~l~~~~~---~~~~~---~~~------sL~I~~v~~~ 193 (558)
+|.+.+.+.. ..+.+|+.+.|.|.+.|.++ +.|.|+|+|..+..... ..... .++ .|.|.....+
T Consensus 349 ~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~ 428 (475)
T 1iga_A 349 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWK 428 (475)
T ss_pred CCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhc
Confidence 6766554433 34678999999999999643 48999999998865420 01112 222 4777777788
Q ss_pred CCeEEEEEEEeCCce
Q psy10160 194 DSGEYRCVASNSYTS 208 (558)
Q Consensus 194 D~G~Y~C~a~N~~G~ 208 (558)
|.|.|+|.|.|....
T Consensus 429 ~~g~YtC~a~n~~l~ 443 (475)
T 1iga_A 429 KGDTFSCMVGHEALP 443 (475)
T ss_pred CCCEEEEEEEcCCCC
Confidence 999999999998654
|
| >3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.3e-14 Score=130.49 Aligned_cols=82 Identities=13% Similarity=0.233 Sum_probs=56.3
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeec-cCCC-eEEEEECCEEeccCCc---------eEEEccCCeEEEccCCCCCCeEE
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDG-YPIP-QVFWYKDGQVIENDGV---------HYRITESNRLHINQANATDSGEY 198 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g-~P~p-~i~W~~~g~~l~~~~~---------~~~~~~~~sL~I~~v~~~D~G~Y 198 (558)
|.+...+....+..|+.+.|.|.+.| .|.| .+.|+|+|..+..... .+.+ ...|.|.....+|+|.|
T Consensus 122 P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~s~l~i~~~~~~d~g~Y 199 (218)
T 3s96_B 122 PTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMA--SSFLHLTSDQWRSHNSF 199 (218)
T ss_dssp CEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC--------------CEEE--EEEEEEEHHHHHTCSCE
T ss_pred ceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcCceecCcccccCCcEEE--EEEEEEeHHHccCCCeE
Confidence 33333333334456789999999998 5777 8999999998865211 1111 12488888888899999
Q ss_pred EEEEEeCCceeeEEE
Q psy10160 199 RCVASNSYTSDENAV 213 (558)
Q Consensus 199 ~C~a~N~~G~~~~~~ 213 (558)
+|.|.|..+....++
T Consensus 200 ~C~a~n~~~~~~~~~ 214 (218)
T 3s96_B 200 TCQVTHEGDTVEKSL 214 (218)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred EEEEEeCCCcccccc
Confidence 999999987766543
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-14 Score=148.25 Aligned_cols=192 Identities=12% Similarity=0.126 Sum_probs=112.2
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEe-----------------CCCCccCCCCc---cc-cCceeEEecc
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQA-----------------LPSEKVADPNA---ID-YGTILSSAFP 72 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~-----------------~p~~~~~~~~~---v~-~~~~~~~~~~ 72 (558)
.|.|.+++.+| |.|+|.|.|..+... ...+.+.. .|.....+|.. +. +..+.+.|.+
T Consensus 195 ~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~ 273 (457)
T 1hzh_H 195 VVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVV 273 (457)
T ss_dssp EEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEE
T ss_pred EEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEE
Confidence 79999999999 999999999877642 33333221 11111222221 22 3456688988
Q ss_pred CCCCCC----cEEEEeCCcccCCCCce-----eeccccce------------eeceeEEeeccceeeEEe--ee--ceee
Q psy10160 73 SESASP----VVTQTTTTTTEATSPHV-----YAALTHCV------------PWSNVCLFGARSGYLKET--QN--GGYL 127 (558)
Q Consensus 73 ~~~p~p----~v~W~~~~~~~~~~~~~-----~~g~~~~~------------~~~~~~~~~~~~~~~~~~--~~--~~~~ 127 (558)
.+.|++ .++|++++..+...... ..|.+... .-.|.|.+.+........ .. ..+.
T Consensus 274 ~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~ 353 (457)
T 1hzh_H 274 VDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQP 353 (457)
T ss_dssp ECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCC
T ss_pred EcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCC
Confidence 887553 89999998665432110 00111000 123456655443221111 11 1234
Q ss_pred eCcEEEecCCc-eEeeCCCcEEEEeEeeccCCC--eEEEEECCEEeccCC-ceEEEccCC------eEEEccCCCCCCeE
Q psy10160 128 VPVKVNITLET-QVFGVGSDISIPCDVDGYPIP--QVFWYKDGQVIENDG-VHYRITESN------RLHINQANATDSGE 197 (558)
Q Consensus 128 ~p~~~~~~~~~-~~v~~G~~v~L~C~~~g~P~p--~i~W~~~g~~l~~~~-~~~~~~~~~------sL~I~~v~~~D~G~ 197 (558)
.+|.+...+.. ..+..|+ +.|.|.+.|.|+| .|.|+|+|..+.... .......++ .|.|.....+|.|.
T Consensus 354 ~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ 432 (457)
T 1hzh_H 354 REPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNV 432 (457)
T ss_dssp BCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCC
T ss_pred CCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCe
Confidence 56766654433 3344555 9999999997554 899999999885321 111223333 35566665678999
Q ss_pred EEEEEEeCCce
Q psy10160 198 YRCVASNSYTS 208 (558)
Q Consensus 198 Y~C~a~N~~G~ 208 (558)
|+|.|.|....
T Consensus 433 YtC~a~n~~l~ 443 (457)
T 1hzh_H 433 FSCSVMHEALH 443 (457)
T ss_dssp EEEEEECTTSG
T ss_pred EEEEEEECCCC
Confidence 99999997543
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A | Back alignment and structure |
|---|
Probab=99.50 E-value=8.9e-14 Score=130.96 Aligned_cols=75 Identities=19% Similarity=0.329 Sum_probs=56.4
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCE-----Eec--------cCCceEEEcc-----CCeEEEccCCCC
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ-----VIE--------NDGVHYRITE-----SNRLHINQANAT 193 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~-----~l~--------~~~~~~~~~~-----~~sL~I~~v~~~ 193 (558)
+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++. .+. ..+.++.+.. ..+|.|.+++.+
T Consensus 130 v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 209 (238)
T 2p1y_A 130 VRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPG 209 (238)
T ss_dssp CEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGG
T ss_pred EEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHH
Confidence 3344566778899999999999999999999999641 110 0122444431 247999999999
Q ss_pred CCeEEEEEEEeCC
Q psy10160 194 DSGEYRCVASNSY 206 (558)
Q Consensus 194 D~G~Y~C~a~N~~ 206 (558)
|+|.|+|.|.|..
T Consensus 210 D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 210 DSATYFCAAIDTN 222 (238)
T ss_dssp GCEEEEEEEEETT
T ss_pred HCEEEEEEEeeCC
Confidence 9999999999984
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.2e-14 Score=137.21 Aligned_cols=166 Identities=17% Similarity=0.165 Sum_probs=113.2
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEc--cCC--eEEEccCCCCCCeEEEEEEE
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT--ESN--RLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~--~~~--sL~I~~v~~~D~G~Y~C~a~ 203 (558)
.||.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+..++.++.+. .++ +|.|.+++.+|+|.|+|.|.
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 82 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence 47888888889999999999999999999999999999999987665555543 233 89999999999999999999
Q ss_pred eCCceeeEEEEEEEeccCCCCCCCCCCcccc-ceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhh-h
Q psy10160 204 NSYTSDENAVTIRVEGIFIHPSCRDLPLFAN-CKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAA-A 281 (558)
Q Consensus 204 N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~-~ 281 (558)
|..|..+..+.|.|..++.. ...+.... ..+ .+..|.... ..|.+.|.|.+.+.|++++....... .
T Consensus 83 n~~g~~~~~~~l~V~~~p~~---~~~~~~~~~~~~-----~~~~g~~~~---l~C~~~g~p~p~i~W~~~~~~~~~~~~~ 151 (305)
T 2nzi_A 83 NQGGSVSGTASLEVEVPAKI---HLPKTLEGMGAV-----HALRGEVVS---IKIPFSGKPDPVITWQKGQDLIDNNGHY 151 (305)
T ss_dssp ETTEEEEEEEEEEECEEEEE---CCCHHHHSSCCE-----EEETTCCEE---EEEEEEEESCCEEEEEESSSBCCSSSSC
T ss_pred cCCCCccceEEEEEecCCcc---CCCccccccccE-----EecCCCEEE---EEEEECCCCCCEEEEEECCEECCCCCcE
Confidence 99999989999999654321 10000000 011 112223333 45555689999999999875543222 1
Q ss_pred hhh---hcccccchh-hhhhhHHHhhc
Q psy10160 282 DKK---RRSRRSLSV-VNKWSLRQAFT 304 (558)
Q Consensus 282 ~~~---~~grth~q~-a~~~t~g~~~~ 304 (558)
... ..+..++.. +.+.+.|.|..
T Consensus 152 ~~~~~~~~~~l~i~~~~~~~d~G~Y~C 178 (305)
T 2nzi_A 152 QVIVTRSFTSLVFPNGVERKDAGFYVV 178 (305)
T ss_dssp EEEECSSEEEEEETTCCCSTTCEEEEE
T ss_pred EEEEcCCceEEEEecCCccCccEEEEE
Confidence 111 122334444 55566665544
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=125.43 Aligned_cols=134 Identities=19% Similarity=0.266 Sum_probs=97.9
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEee-ccCCCeEEEEECCEEeccCCc-eEEE--cc--------CCeEEEccCCCCCCe
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIENDGV-HYRI--TE--------SNRLHINQANATDSG 196 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~-g~P~p~i~W~~~g~~l~~~~~-~~~~--~~--------~~sL~I~~v~~~D~G 196 (558)
||.+...+....+.+|+.+.|.|.+. |.|.|.+.|+|++..+..... ++.+ .. +++|.|.+++.+|+|
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 81 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG 81 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence 57778888999999999999999999 999999999999999876532 3332 22 357999999999999
Q ss_pred EEEEEEEeCCceee-EEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCC-cccccchhh
Q psy10160 197 EYRCVASNSYTSDE-NAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPS-YGPHIKRAV 274 (558)
Q Consensus 197 ~Y~C~a~N~~G~~~-~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~-~~~w~~~~l 274 (558)
.|+|.+.|..|... ..+.|.|..+ |.+...+. . ..+..|.... ..|.+.|.|.| .+.|++++.
T Consensus 82 ~Y~C~~~~~~~~~~~~~~~l~V~~~---p~~~~~~~---~------~~~~~g~~~~---l~C~~~g~p~p~~v~W~~~~~ 146 (195)
T 2c5d_C 82 QYQCLVFLGHQTFVSQPGYVGLEGL---PYFLEEPE---D------RTVAANTPFN---LSCQAQGPPEPVDLLWLQDAV 146 (195)
T ss_dssp EEEEEEEETTEEEECCCEEEEECCS---CEEEECCC---C------EEECTTCCEE---EEEEEECSSCCCEEEEEESSC
T ss_pred EEEEEEEeCCCceecccEEEEEecC---CeEEcCCC---c------EEEcCCCEEE---EEeECCCCCCCCEEEEEECCE
Confidence 99999999988764 4478888543 32221111 1 1122233334 45556689999 899999976
Q ss_pred hhh
Q psy10160 275 EAE 277 (558)
Q Consensus 275 ~~~ 277 (558)
...
T Consensus 147 ~~~ 149 (195)
T 2c5d_C 147 PLA 149 (195)
T ss_dssp BSS
T ss_pred ecc
Confidence 544
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.9e-14 Score=134.27 Aligned_cols=117 Identities=12% Similarity=0.106 Sum_probs=58.9
Q ss_pred EeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEc---cCCeEEEccCCCCCCeEEEEEEEeCCc-----eeeE
Q psy10160 140 VFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT---ESNRLHINQANATDSGEYRCVASNSYT-----SDEN 211 (558)
Q Consensus 140 ~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~---~~~sL~I~~v~~~D~G~Y~C~a~N~~G-----~~~~ 211 (558)
.+.+|+.++|.|.+.+.| +.+.|+|+|..+.....+.... .+++|.|.+++ |+|.|+|.|.|... ..+.
T Consensus 117 ~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~ 193 (257)
T 1b6u_A 117 TVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSD 193 (257)
T ss_dssp TCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCC
T ss_pred ccCCCCEEEEEEeCCCCC-cEEEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCC
Confidence 568999999999998864 7899999998765432111111 24589999998 99999999998632 3356
Q ss_pred EEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhh
Q psy10160 212 AVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAV 274 (558)
Q Consensus 212 ~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l 274 (558)
.+.|.|.+++... . |..... ...++..+...|.. |.+...+.|+.-++
T Consensus 194 pl~L~V~g~p~~~-~---p~~~~~----------~~~~g~~~~l~~~~-~~~~~~~~~~~~~~ 241 (257)
T 1b6u_A 194 PLLVSVTGNPSNS-W---PSPTEP----------SSETGNPRHLHAAA-EQKLISEEDLNLDL 241 (257)
T ss_dssp CEEECCBCCC-----------------------------------------------------
T ss_pred CEEEEEeccCCCC-C---CCCccc----------CccCCCeEEEEEEE-cchHHHHHHhhhhh
Confidence 6888887764211 0 100000 01123344455666 88888888877643
|
| >3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A | Back alignment and structure |
|---|
Probab=99.49 E-value=8.1e-14 Score=132.70 Aligned_cols=93 Identities=18% Similarity=0.282 Sum_probs=64.9
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCC----eEEEEEC--CEEec-----------cCCceEEEcc---CCeEEEc
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIP----QVFWYKD--GQVIE-----------NDGVHYRITE---SNRLHIN 188 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p----~i~W~~~--g~~l~-----------~~~~~~~~~~---~~sL~I~ 188 (558)
++.+...+....+.+|+.++|.|.+.+.|.| .+.|+|+ +.... ....++.... ..+|.|.
T Consensus 133 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 212 (253)
T 3uzq_A 133 ELVMTQTPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTIN 212 (253)
T ss_dssp -CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred cceEECcCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEEC
Confidence 3445556667788999999999999999887 8999984 22111 0112444322 2369999
Q ss_pred cCCCCCCeEEEEEEEeCCceee-EEEEEEEeccC
Q psy10160 189 QANATDSGEYRCVASNSYTSDE-NAVTIRVEGIF 221 (558)
Q Consensus 189 ~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~~~~ 221 (558)
+++.+|+|.|.|.|.|..+... .-..|.|.+.+
T Consensus 213 ~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~~ 246 (253)
T 3uzq_A 213 PVEADDVATYFCQRSNEVPWTFGGGTKLEIKRPL 246 (253)
T ss_dssp SCCGGGCEEEEEEECSSSSCCBCCCEEEEECCC-
T ss_pred CCCHHHCEEEEEEEccCCCcEECCCEEEEEcCCC
Confidence 9999999999999999765442 44567776543
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-13 Score=132.27 Aligned_cols=193 Identities=15% Similarity=0.150 Sum_probs=120.8
Q ss_pred cccC-ceeEEeccCCCCCCcEEEEeCCcccCC-----C---------CceeeccccceeeceeEEeeccceeeEEeeece
Q psy10160 61 IDYG-TILSSAFPSESASPVVTQTTTTTTEAT-----S---------PHVYAALTHCVPWSNVCLFGARSGYLKETQNGG 125 (558)
Q Consensus 61 v~~~-~~~~~~~~~~~p~p~v~W~~~~~~~~~-----~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (558)
+..| .+.+.|...+ .+.|++++..... . .....|.|.|.+.+ ..+.......+.
T Consensus 16 v~~G~~v~L~C~~~~----~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~-------~~~~~~~~~~l~ 84 (289)
T 3ejj_X 16 VEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELE-------DPMAGSTTIHLY 84 (289)
T ss_dssp ECTTCCEEEEEECSS----CCEEECSCSSSSEECCCSSCCEEEESSCCGGGCEEEEEECCC------------CEEEEEE
T ss_pred ECCCCCEEEEEEeCC----cEEEccCCCceEEEeccCCccEEEEeeeccccCEEEEEEEec-------cCCcceeEEEEE
Confidence 3344 5668888766 4999987543211 0 01124555555443 332222223333
Q ss_pred eeeCcE-EEecCCceEeeCCCcEEEEeEeeccCCCe-EEEEE-CCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEE
Q psy10160 126 YLVPVK-VNITLETQVFGVGSDISIPCDVDGYPIPQ-VFWYK-DGQVIENDGVHYRITESNRLHINQANATDSGEYRCVA 202 (558)
Q Consensus 126 ~~~p~~-~~~~~~~~~v~~G~~v~L~C~~~g~P~p~-i~W~~-~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a 202 (558)
+..++. +...+....+.+|+.+.|.|.+.+.|.|. +.|++ ++..+.. +.++....+++|.|.+++.+|+|.|+|.+
T Consensus 85 V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 163 (289)
T 3ejj_X 85 VKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLR-KTVYFFSPWRGFIIRKAKVLDSNTYVCKT 163 (289)
T ss_dssp ECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCT-TCCEEEETTTEEEESSCCGGGCEEEEEEE
T ss_pred EeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCC-CccEEECCCCCEEEeecccccCEEEEEEE
Confidence 333443 56667788889999999999999988876 99986 5666554 44777777889999999999999999999
Q ss_pred E-eCCceeeEEEEEEEeccC-CCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCC-CCCCcccccchhhhhh
Q psy10160 203 S-NSYTSDENAVTIRVEGIF-IHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAG-QLPSYGPHIKRAVEAE 277 (558)
Q Consensus 203 ~-N~~G~~~~~~~l~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g-~~~~~~~w~~~~l~~~ 277 (558)
. |..+..+..+.|.|.... .+|.+...+ . ...+..|....+.| .+.+ .|++.+.|++++....
T Consensus 164 ~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~---~------~~~~~~g~~~~l~C---~~~~~~p~~~i~W~~~~~~~~ 229 (289)
T 3ejj_X 164 MVNGRESTSTGIWLKVNRVHPEPPQIKLEP---S------KLVRIRGEAAQIVC---SATNAEVGFNVILKRGDTKLE 229 (289)
T ss_dssp EETTEEEECCCEEEEEESSCCCCCEEEEES---S------SEECCSSSCEEEEE---EEEESSSCCEEEEEETTEECC
T ss_pred EeCCCccccccEEEEEEECCCCCCeEEecC---C------ceEEEeCCcEEEEE---EeCCCCCceEEEEEECCEEee
Confidence 9 555666778888887432 222222111 1 11112333444444 4446 7899999999975543
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=99.49 E-value=7.4e-13 Score=134.27 Aligned_cols=206 Identities=14% Similarity=0.030 Sum_probs=127.2
Q ss_pred CCceEec----CCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCCC-ccccC-ceeEEeccCCCCCC
Q psy10160 6 SENYELN----KNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPN-AIDYG-TILSSAFPSESASP 78 (558)
Q Consensus 6 ~~r~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~~-~v~~~-~~~~~~~~~~~p~p 78 (558)
+.|+.+. +++|.|.+++.+|+|.|+|.|.|..|... ++.|.|..+|........ .+..| .+.+.|...+.|.|
T Consensus 51 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~ 130 (389)
T 2jll_A 51 DGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPA 130 (389)
T ss_dssp SSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCC
T ss_pred CCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCC
Confidence 3566642 46999999999999999999999998764 677777776654432222 23344 56689999999999
Q ss_pred cEEEEeCCcccCCCC--cee---eccccce---------eeceeEEeeccceeeEEeeeceeeeCcEEEecCCceE--ee
Q psy10160 79 VVTQTTTTTTEATSP--HVY---AALTHCV---------PWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQV--FG 142 (558)
Q Consensus 79 ~v~W~~~~~~~~~~~--~~~---~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--v~ 142 (558)
.+.|++++..+.... +.. .+....+ ...+.|.+.|..+.........+..+|. .+.... ..
T Consensus 131 ~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~---~P~~~~~~~~ 207 (389)
T 2jll_A 131 SIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPS---SPYGVKIIEL 207 (389)
T ss_dssp EEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCC---CCEEEEEEEE
T ss_pred eEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCC---CCcceEEeec
Confidence 999999987776543 111 0000111 1235666666666544333322222221 111111 12
Q ss_pred CCCcEEEEeEee----ccCCC--eEEEEECCEEeccCCceEEE-ccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEE
Q psy10160 143 VGSDISIPCDVD----GYPIP--QVFWYKDGQVIENDGVHYRI-TESNRLHINQANATDSGEYRCVASNSYTSDENAVTI 215 (558)
Q Consensus 143 ~G~~v~L~C~~~----g~P~p--~i~W~~~g~~l~~~~~~~~~-~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 215 (558)
.+..+.|.|... |.|.. .+.|.+++..... .... ....++.|.++...|.|.|.|.|.|..|....+..+
T Consensus 208 ~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~~---~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~ 284 (389)
T 2jll_A 208 SQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWK---IVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIE 284 (389)
T ss_dssp CSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCCE---EEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCE
T ss_pred cCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcccE---EeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcce
Confidence 457788988742 23433 3678877642111 1111 123579999999999999999999999977544333
Q ss_pred EE
Q psy10160 216 RV 217 (558)
Q Consensus 216 ~V 217 (558)
.+
T Consensus 285 ~~ 286 (389)
T 2jll_A 285 IF 286 (389)
T ss_dssp EE
T ss_pred EE
Confidence 34
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-14 Score=147.77 Aligned_cols=193 Identities=12% Similarity=0.139 Sum_probs=114.4
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcce-EEEEEEEEe---------C---CCCccCCCCc---ccc-CceeEEeccCCCC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQA---------L---PSEKVADPNA---IDY-GTILSSAFPSESA 76 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~s~~l~V~~---------~---p~~~~~~~~~---v~~-~~~~~~~~~~~~p 76 (558)
+.|.|.+++.+| |.|+|.|.|..|.. ....+.+.. . |.....+|.. +.. ..+.+.|...+.+
T Consensus 180 s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~ 258 (434)
T 1igy_B 180 SSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDIS 258 (434)
T ss_dssp EEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCC
T ss_pred EEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccc
Confidence 469999999999 99999999998874 233332220 0 2222233321 444 4666889888874
Q ss_pred ----CCcEEEEeCCcccCCCCce-----eecccc---cee---------eceeEEeeccceeeEEeee----ceeeeCcE
Q psy10160 77 ----SPVVTQTTTTTTEATSPHV-----YAALTH---CVP---------WSNVCLFGARSGYLKETQN----GGYLVPVK 131 (558)
Q Consensus 77 ----~p~v~W~~~~~~~~~~~~~-----~~g~~~---~~~---------~~~~~~~~~~~~~~~~~~~----~~~~~p~~ 131 (558)
.+.++|++++..+...... ..+.|. .+. -.|.|.+.+..+....... ..+..+|.
T Consensus 259 p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~ 338 (434)
T 1igy_B 259 KDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQ 338 (434)
T ss_dssp SSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCC
T ss_pred cCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCE
Confidence 3589999998765432110 001000 011 1245555554442211111 12335666
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccCCC--eEEEEECCEEeccCCceEE--EccCC------eEEEccCCCCCCeEEEEE
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYPIP--QVFWYKDGQVIENDGVHYR--ITESN------RLHINQANATDSGEYRCV 201 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~~~--~~~~~------sL~I~~v~~~D~G~Y~C~ 201 (558)
+...+......+|+.+.|.|.+.|.++| .|.|+|+|..+.... ... ...++ .|.|.....+|+|.|+|.
T Consensus 339 v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~-~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~ 417 (434)
T 1igy_B 339 VYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYK-NTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCS 417 (434)
T ss_dssp CEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCE-ECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEE
T ss_pred EEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCce-eccceeCCCCcEEEEEEEEECchhccCCCEEEEE
Confidence 6555444334467789999999996433 799999998874321 111 12233 467777777889999999
Q ss_pred EEeCCce
Q psy10160 202 ASNSYTS 208 (558)
Q Consensus 202 a~N~~G~ 208 (558)
|.|....
T Consensus 418 a~n~~l~ 424 (434)
T 1igy_B 418 VLHEGLH 424 (434)
T ss_dssp EEETTSG
T ss_pred EEcCCCC
Confidence 9998644
|
| >2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.4e-14 Score=107.41 Aligned_cols=79 Identities=28% Similarity=0.531 Sum_probs=64.3
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCC---eEEEccCCCCCCeEEEEEEEeCCceeeEE
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRCVASNSYTSDENA 212 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 212 (558)
..+..+.+|+.+.|.|.+.| |.|.+.|+|+|.++..++ ++.+...+ +|.|.+++.+|+|.|+|.|.| ...+
T Consensus 3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~ 76 (84)
T 2lu7_A 3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQG-RVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DSRI 76 (84)
T ss_dssp CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCS-SEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TCEE
T ss_pred CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccc-cEEEeecCCeEEEEecCCCCcccEEEEEEECC----EEEE
Confidence 34667889999999999977 999999999999998765 55554433 699999999999999999844 4677
Q ss_pred EEEEEecc
Q psy10160 213 VTIRVEGI 220 (558)
Q Consensus 213 ~~l~V~~~ 220 (558)
+.|.|.+|
T Consensus 77 a~l~V~eP 84 (84)
T 2lu7_A 77 FLVSVEEP 84 (84)
T ss_dssp EEEEECCC
T ss_pred EEEEEECC
Confidence 78888643
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=112.46 Aligned_cols=90 Identities=26% Similarity=0.356 Sum_probs=71.6
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCC---CeEEEEECCEEecc--CCceEEEc---------cCCeEEEccCCCCC
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPI---PQVFWYKDGQVIEN--DGVHYRIT---------ESNRLHINQANATD 194 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~---p~i~W~~~g~~l~~--~~~~~~~~---------~~~sL~I~~v~~~D 194 (558)
.|.|...|....+.+|+.++|.|.+.|.|. |.|.|+|++..... .+.++.+. ..++|.|.+++.+|
T Consensus 4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 83 (108)
T 3cx2_A 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF 83 (108)
T ss_dssp CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence 456666778888999999999999999998 99999998732211 11233332 13579999999999
Q ss_pred CeEEEEEEEeCCceeeEEEEEEEe
Q psy10160 195 SGEYRCVASNSYTSDENAVTIRVE 218 (558)
Q Consensus 195 ~G~Y~C~a~N~~G~~~~~~~l~V~ 218 (558)
+|.|+|.|.|..|..+..+.|.|.
T Consensus 84 ~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 84 TGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CEEEEEEEecCCCceEEEEEEEEe
Confidence 999999999999999999999985
|
| >1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-14 Score=133.43 Aligned_cols=81 Identities=15% Similarity=0.207 Sum_probs=57.4
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeecc-CC-CeEEEEECCEEeccCCceEEE-------ccCCeEEEccCCCCCCeEEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGY-PI-PQVFWYKDGQVIENDGVHYRI-------TESNRLHINQANATDSGEYR 199 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~~~~-------~~~~sL~I~~v~~~D~G~Y~ 199 (558)
+|.+...+....+.+|+.+.|.|.+.|. |. |.+.|+|+|..+......... ...++|.|.++..+|+|.|+
T Consensus 113 ~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~ 192 (212)
T 1nfd_E 113 SPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVS 192 (212)
T ss_dssp CCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEE
T ss_pred CCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEE
Confidence 3334333333334579999999999997 54 789999999988643211000 01245899999999999999
Q ss_pred EEEEeCCcee
Q psy10160 200 CVASNSYTSD 209 (558)
Q Consensus 200 C~a~N~~G~~ 209 (558)
|.|.|..+..
T Consensus 193 C~a~n~~~~~ 202 (212)
T 1nfd_E 193 CQVTHEGETV 202 (212)
T ss_dssp EEEECTTTTC
T ss_pred EEEEeCCceE
Confidence 9999987654
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-13 Score=107.28 Aligned_cols=84 Identities=20% Similarity=0.432 Sum_probs=71.9
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
++.+...|....+.+|+.+.|.|.+.|+|.|.+.|+|++..+.... .++|.|.+++.+|+|.|+|.|.|..|.
T Consensus 3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~-------~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 75 (91)
T 3bfo_A 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-------KKLYMVPYVDLEHQGTYWCHVYNDRDS 75 (91)
T ss_dssp CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCC-------SSEEEESSCCGGGCEEEEEEEECSSCE
T ss_pred ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCC-------CCeEEECCCCHHhCEEEEEEEEcCCCC
Confidence 4566777888889999999999999999999999999998876532 358999999999999999999999997
Q ss_pred ee-EEEEEEEec
Q psy10160 209 DE-NAVTIRVEG 219 (558)
Q Consensus 209 ~~-~~~~l~V~~ 219 (558)
.. ..+.|.|.+
T Consensus 76 ~~s~~~~l~V~~ 87 (91)
T 3bfo_A 76 QDSKKVEIIIDE 87 (91)
T ss_dssp EECCCEEEEEC-
T ss_pred EEeeeEEEEEeh
Confidence 64 567787753
|
| >3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=129.69 Aligned_cols=131 Identities=17% Similarity=0.252 Sum_probs=88.4
Q ss_pred CCceEe----cCCeEEEcCCCCCCCEEEEEEEEeCCcceE--EEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCc
Q psy10160 6 SENYEL----NKNMLTIKRVEPERLGAYTCQAYNGLGRAV--SWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPV 79 (558)
Q Consensus 6 ~~r~~~----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~--s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~ 79 (558)
.+|+.. .+.+|.|.+++.+|+|.|+|.+.|..+... ...+.|...+
T Consensus 82 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---------------------------- 133 (237)
T 3sob_L 82 PSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTV---------------------------- 133 (237)
T ss_dssp CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCC----------------------------
T ss_pred CCcEEEEcCCCEEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCC----------------------------
Confidence 346654 345899999999999999999998765432 2344443211
Q ss_pred EEEEeCCcccCCCCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeecc-C-
Q psy10160 80 VTQTTTTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGY-P- 157 (558)
Q Consensus 80 v~W~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P- 157 (558)
.+|.+...+....+.+|+.+.|.|.+.|. |
T Consensus 134 ------------------------------------------------~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~ 165 (237)
T 3sob_L 134 ------------------------------------------------AAPSVFIFPPSDEQLKSGTASVVCLLNNFYPR 165 (237)
T ss_dssp ------------------------------------------------BCCEEEEECCCHHHHHHTEEEEEEEEEEEBSS
T ss_pred ------------------------------------------------CCCceEEeCCChhhccCCceEEEEEEcccCCC
Confidence 13333333333334568899999999984 4
Q ss_pred CCeEEEEECCEEeccCC-ceE--EEccC------CeEEEccCCCCCCeEEEEEEEeCCceeeEE
Q psy10160 158 IPQVFWYKDGQVIENDG-VHY--RITES------NRLHINQANATDSGEYRCVASNSYTSDENA 212 (558)
Q Consensus 158 ~p~i~W~~~g~~l~~~~-~~~--~~~~~------~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 212 (558)
.|.+.|+|+|..+.... ... ....+ .+|.|..+..+|+|.|+|.|.|........
T Consensus 166 ~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~ 229 (237)
T 3sob_L 166 EAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVT 229 (237)
T ss_dssp CCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEE
T ss_pred ceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCcee
Confidence 58999999999886421 011 11111 358899999999999999999987655433
|
| >3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.9e-14 Score=128.83 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=56.4
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCC--eEEEEECCEEeccCC-ceE--EEccC------CeEEEccCCCCCCeE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIP--QVFWYKDGQVIENDG-VHY--RITES------NRLHINQANATDSGE 197 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~g~~l~~~~-~~~--~~~~~------~sL~I~~v~~~D~G~ 197 (558)
+|.+...+....+..|+.+.|.|.+.|.|+| .+.|+|+|..+.... ... ....+ ..|.|.....+|+|.
T Consensus 112 ~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~ 191 (213)
T 3r06_A 112 KPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNL 191 (213)
T ss_dssp CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCE
T ss_pred CceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCe
Confidence 3444444444445578889999999987653 799999999886521 111 11112 257888888899999
Q ss_pred EEEEEEeCCceee
Q psy10160 198 YRCVASNSYTSDE 210 (558)
Q Consensus 198 Y~C~a~N~~G~~~ 210 (558)
|+|.|.|......
T Consensus 192 YtC~v~n~~~~~~ 204 (213)
T 3r06_A 192 YTCEVTHKTSTAA 204 (213)
T ss_dssp EEEEEEETTCSSC
T ss_pred EEEEEEecccCcc
Confidence 9999999865443
|
| >4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-13 Score=126.16 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=54.2
Q ss_pred eeCCCcEEEEeE-eeccCCCeEEEEECCEEeccCCceEEEccC------CeEEEccCCCCCCeEEEEEEEeCCceee--E
Q psy10160 141 FGVGSDISIPCD-VDGYPIPQVFWYKDGQVIENDGVHYRITES------NRLHINQANATDSGEYRCVASNSYTSDE--N 211 (558)
Q Consensus 141 v~~G~~v~L~C~-~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~------~sL~I~~v~~~D~G~Y~C~a~N~~G~~~--~ 211 (558)
...++.+.+.|. +.+.|+|.+.|++++..+.... ......+ +.|.|.++..+|+|.|+|.|.|..|... .
T Consensus 133 ~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~ 211 (225)
T 4fmk_A 133 IGPQSVAVARCVSTGGRPPARITWISSLGGEAKDT-QEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILL 211 (225)
T ss_dssp CSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEE-EEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEE
T ss_pred ecceeeeeeeeeecCCCCCCEEEEEECCccccCCc-ceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEE
Confidence 345666666666 5667888999999876554321 2222222 2599999999999999999999988764 4
Q ss_pred EEEEEEec
Q psy10160 212 AVTIRVEG 219 (558)
Q Consensus 212 ~~~l~V~~ 219 (558)
+++|.|..
T Consensus 212 ~v~l~V~Y 219 (225)
T 4fmk_A 212 PVTLSVRY 219 (225)
T ss_dssp EEECCBTT
T ss_pred EEEEEEEE
Confidence 55566643
|
| >3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=131.61 Aligned_cols=92 Identities=14% Similarity=0.263 Sum_probs=65.2
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEec-----------cCCceEEEccC---CeEEEccCCC
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVIE-----------NDGVHYRITES---NRLHINQANA 192 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l~-----------~~~~~~~~~~~---~sL~I~~v~~ 192 (558)
++.+...+....+.+|+.++|.|.+.+.|.|.+.|+|+ +..+. ....++..... .+|.|.+++.
T Consensus 138 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 217 (256)
T 3umt_A 138 DIQLTQSPSSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLES 217 (256)
T ss_dssp CCCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCG
T ss_pred ccEEEcCCCeEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCCh
Confidence 44555566677889999999999999999999999984 22111 01124443322 2699999999
Q ss_pred CCCeEEEEEEEeCCcee-eEEEEEEEecc
Q psy10160 193 TDSGEYRCVASNSYTSD-ENAVTIRVEGI 220 (558)
Q Consensus 193 ~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~ 220 (558)
+|+|.|+|.+.|..+.. .....|.|.+.
T Consensus 218 ~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~ 246 (256)
T 3umt_A 218 EDFVDYYCLQYASSPPTFGGGTKLEIKRA 246 (256)
T ss_dssp GGCSEEEEEECSSSSCEECCCEEEEEC--
T ss_pred hHCEEEEEEEeeCCCcEECCCEEEEEECC
Confidence 99999999999975544 24567777644
|
| >1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ... | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=129.46 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=54.1
Q ss_pred EeeCCCcEEEEeEeecc-CCC-eEEEEECCEEecc--CC-----ceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceee
Q psy10160 140 VFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIEN--DG-----VHYRITESNRLHINQANATDSGEYRCVASNSYTSDE 210 (558)
Q Consensus 140 ~v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~--~~-----~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~ 210 (558)
.+.+|+.++|.|.+.|. |.| .+.|++++..+.. .. ..|. ..+.|.|.++..+| |.|+|.|.|..+...
T Consensus 132 ~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~g~~~--~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 208 (227)
T 1mju_H 132 GDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYT--LSSSVTVTSSTWPS-QSITCNVAHPASSTK 208 (227)
T ss_dssp ------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEE--EEEEEEECTTTTTT-SCCEEEEEEGGGTEE
T ss_pred cccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEECCceecCCeEE--EEEEEEEchhhcCC-CeEEEEEEECCCCcc
Confidence 35679999999999986 877 8999999876421 11 1221 12469999999888 999999999887776
Q ss_pred EEEEEEEeccC
Q psy10160 211 NAVTIRVEGIF 221 (558)
Q Consensus 211 ~~~~l~V~~~~ 221 (558)
....+.+.++|
T Consensus 209 ~~~~~~~~~~p 219 (227)
T 1mju_H 209 VDKKIEPRGPT 219 (227)
T ss_dssp EEEECCCCCC-
T ss_pred eEEEeCCCCCC
Confidence 66676665554
|
| >3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-13 Score=131.96 Aligned_cols=83 Identities=16% Similarity=0.376 Sum_probs=59.3
Q ss_pred CCceEeeCCCcEEEEeEeeccC--CCeEEEEECC--EEe----------------ccCCceEEEccC-----CeEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYP--IPQVFWYKDG--QVI----------------ENDGVHYRITES-----NRLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~g--~~l----------------~~~~~~~~~~~~-----~sL~I~~v 190 (558)
+....+.+|+.++|.|.+.|.| .|.+.|+|++ ... .....++.+..+ .+|.|.++
T Consensus 141 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 220 (276)
T 3auv_A 141 SGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSL 220 (276)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred CCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCC
Confidence 4567788999999999999987 5889999963 211 011235555432 27999999
Q ss_pred CCCCCeEEEEEEEeCC---cee--eEEEEEEEe
Q psy10160 191 NATDSGEYRCVASNSY---TSD--ENAVTIRVE 218 (558)
Q Consensus 191 ~~~D~G~Y~C~a~N~~---G~~--~~~~~l~V~ 218 (558)
+.+|+|.|+|.|.|.. +.. .....|.|.
T Consensus 221 ~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~V~ 253 (276)
T 3auv_A 221 RAEDTAVYYCARFVFFLPYAMDYWGQGTLVTVS 253 (276)
T ss_dssp CGGGCEEEEEEEECSSTTCSCCCBCCCEEEEEC
T ss_pred ChhHCEEEEEEEEcCcCCcCceEECCCEEEEEc
Confidence 9999999999999983 211 233566664
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=110.24 Aligned_cols=83 Identities=23% Similarity=0.468 Sum_probs=71.1
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEE
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTI 215 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 215 (558)
+....+.+|+.+.|.|.+.|.| |.+.|+|++..+.... ++.+. +++|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus 10 p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~-~~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 86 (99)
T 2cr3_A 10 VESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESN-RTRIT-GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSV 86 (99)
T ss_dssp EEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCS-SEEEC-SSEEEETTCCTTTCEEEEEEEEETTEEEEEEEEE
T ss_pred CcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCC-cEEEE-CCEEEEccCCHHHCEEEEEEEEeCCceEEEEEEE
Confidence 3455678999999999999987 8999999998886654 55554 6799999999999999999999999999999999
Q ss_pred EEeccC
Q psy10160 216 RVEGIF 221 (558)
Q Consensus 216 ~V~~~~ 221 (558)
.|.+.+
T Consensus 87 ~V~~~~ 92 (99)
T 2cr3_A 87 NVSDAL 92 (99)
T ss_dssp CBCSCC
T ss_pred EEecCC
Confidence 886544
|
| >3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=125.88 Aligned_cols=127 Identities=21% Similarity=0.243 Sum_probs=89.0
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCC-----CeEEEEECCEEeccCCceEEEccC------CeEEEccCCCCCCeEEEEEE
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPI-----PQVFWYKDGQVIENDGVHYRITES------NRLHINQANATDSGEYRCVA 202 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~-----p~i~W~~~g~~l~~~~~~~~~~~~------~sL~I~~v~~~D~G~Y~C~a 202 (558)
.++....+.+|+.+.|.|.+.+.|. |.+.|+|++........++.+..+ .+|.|.+++.+|+|.|+|.+
T Consensus 7 ~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 86 (202)
T 3bp6_B 7 APKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLV 86 (202)
T ss_dssp CSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred cCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEE
Confidence 3445677899999999999999987 899999944443332334444332 58999999999999999999
Q ss_pred EeCCceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhh
Q psy10160 203 SNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA 276 (558)
Q Consensus 203 ~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~ 276 (558)
.|..|.....+.|.|..++..|... + .....|.... ..|.+.|.|.|.+.|+++....
T Consensus 87 ~~~~~~~~~~~~l~V~~~~~~p~~~---------~----~~~~~g~~v~---l~C~~~g~P~p~v~W~~~~~~~ 144 (202)
T 3bp6_B 87 ICGAAWDYKYLTVKVKASYMRIDTR---------I----LEVPGTGEVQ---LTCQARGYPLAEVSWQNVSVPA 144 (202)
T ss_dssp EETTEEEEEEEEEEEEBCCCCEEEE---------E----EECTTTCCEE---EEEEEEEBSCCEEEETTCCSCC
T ss_pred EeCCCcceEEEEEEecCCCCcccEE---------E----EecCCCCeEE---EEEEccccCCceEEEEeCCCCc
Confidence 9999988899999997654222211 0 0112233344 4455568999999999976543
|
| >3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-13 Score=129.65 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=57.8
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCC-CeEEEEEC--CEEecc-----------CCceEEEccC---CeEEEccCC
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPI-PQVFWYKD--GQVIEN-----------DGVHYRITES---NRLHINQAN 191 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~-p~i~W~~~--g~~l~~-----------~~~~~~~~~~---~sL~I~~v~ 191 (558)
++.+...+....+.+|+.++|.|.+.+.|. |.+.|+|. +..+.. ...++.+..+ .+|.|.+++
T Consensus 149 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 228 (256)
T 3juy_B 149 EIVLTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVE 228 (256)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred eeEEEecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCC
Confidence 344455566778899999999999999887 89999983 222110 1224443322 369999999
Q ss_pred CCCCeEEEEEEEeCCce
Q psy10160 192 ATDSGEYRCVASNSYTS 208 (558)
Q Consensus 192 ~~D~G~Y~C~a~N~~G~ 208 (558)
.+|+|.|.|.|.|..+.
T Consensus 229 ~~DsG~Y~C~~~~~~~~ 245 (256)
T 3juy_B 229 PEDFALYYCQVYGASSY 245 (256)
T ss_dssp GGGCSEEEEEECCSSCC
T ss_pred HhHCEEEEEEEeeCCCc
Confidence 99999999999996543
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=99.46 E-value=8.1e-13 Score=130.82 Aligned_cols=171 Identities=10% Similarity=0.025 Sum_probs=104.0
Q ss_pred eeeEEeeeceeeeCcEEE--ecCCceEeeCC---CcEEEEeE-eeccCCCeEEEEECCEEecc------CCceEEEccCC
Q psy10160 116 GYLKETQNGGYLVPVKVN--ITLETQVFGVG---SDISIPCD-VDGYPIPQVFWYKDGQVIEN------DGVHYRITESN 183 (558)
Q Consensus 116 ~~~~~~~~~~~~~p~~~~--~~~~~~~v~~G---~~v~L~C~-~~g~P~p~i~W~~~g~~l~~------~~~~~~~~~~~ 183 (558)
+.......+.+..+|.+. ..+....+.+| +.+.|.|. +.|.|.|.+.|++++..... .+..+. ...
T Consensus 117 ~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~ 194 (331)
T 3u83_A 117 GNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVT--VIS 194 (331)
T ss_dssp EEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECTTSCEE--EEE
T ss_pred CccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccceeECCCCcEE--EEE
Confidence 333334444455555553 35566778888 77999998 89999999999995322111 111111 123
Q ss_pred eEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCC
Q psy10160 184 RLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQL 263 (558)
Q Consensus 184 sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~ 263 (558)
.|.|.++..+|+|.|+|.|.|..|..+..+.|.|..+|. +...+ .. ...+.. +......|.+.|.|
T Consensus 195 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~---~~~~~--~~------~~~~~~---g~~~~l~C~~~g~p 260 (331)
T 3u83_A 195 RYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPE---VTIEG--FD------GNWYLQ---RMDVKLTCKADANP 260 (331)
T ss_dssp EEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEE---EEEEC--CC------SCCBTT---CCCEEEEEEEEEES
T ss_pred EEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCe---EEEec--CC------CceEeC---CCeEEEEEeCcCCC
Confidence 588888999999999999999999998999998865441 11000 00 001122 33334555666899
Q ss_pred CCc-ccccchhhhhhhhhhhhhhcccccch-hhhhhhHHHhhc
Q psy10160 264 PSY-GPHIKRAVEAEAAAADKKRRSRRSLS-VVNKWSLRQAFT 304 (558)
Q Consensus 264 ~~~-~~w~~~~l~~~~~~~~~~~~grth~q-~a~~~t~g~~~~ 304 (558)
+|. +.|++++....... ....+...+. .+.....|.|..
T Consensus 261 ~p~~i~W~~~~~~~~~~~--~~~~~~L~i~~~v~~~d~G~Y~C 301 (331)
T 3u83_A 261 PATEYHWTTLNGSLPKGV--EAQNRTLFFKGPINYSLAGTYIC 301 (331)
T ss_dssp CCCEEEEEETTBSCCTTE--EEETTEEEECSCCCGGGCEEEEE
T ss_pred CCCEEEEEECCCcccccc--eecCcEEEEeCCCccccCeEEEE
Confidence 998 99999875543221 1112334444 455555555444
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=111.17 Aligned_cols=90 Identities=23% Similarity=0.371 Sum_probs=73.5
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCc-eEEEccC---CeEEEccCCCCCCeEEEEEEEe
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV-HYRITES---NRLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~-~~~~~~~---~sL~I~~v~~~D~G~Y~C~a~N 204 (558)
|+.+...+.+..+.+|+.+.|.|.+.+ |.|.+.|+|++..+..+.. +|.+..+ .+|.|.+++.+|+|.|+|.|.|
T Consensus 7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 85 (103)
T 1x44_A 7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG 85 (103)
T ss_dssp SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC
Confidence 555777788889999999999999988 7799999999999876542 4455443 4799999999999999999988
Q ss_pred CCceeeEEEEEEEeccCCC
Q psy10160 205 SYTSDENAVTIRVEGIFIH 223 (558)
Q Consensus 205 ~~G~~~~~~~l~V~~~~~~ 223 (558)
....+.|.|.+++.+
T Consensus 86 ----~~~~~~l~V~~~p~p 100 (103)
T 1x44_A 86 ----GQSSAKLSVDLKSGP 100 (103)
T ss_dssp ----EEEEEEEEEECCCSC
T ss_pred ----CcEEEEEEEeCCCCC
Confidence 467788888766543
|
| >1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-13 Score=128.05 Aligned_cols=72 Identities=18% Similarity=0.293 Sum_probs=54.2
Q ss_pred EeeCCCcEEEEeEeecc-CCC-eEEEEECCEEe---ccCC----ceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceee
Q psy10160 140 VFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVI---ENDG----VHYRITESNRLHINQANATDSGEYRCVASNSYTSDE 210 (558)
Q Consensus 140 ~v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l---~~~~----~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~ 210 (558)
.+.+|+.+.|.|.+.|. |.| .+.|++++... .... ..|.. .+.|.|.++..+| |.|+|.|.|..|..+
T Consensus 136 ~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 212 (220)
T 1pz5_B 136 SDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSL--SSLVTVPSSTWPS-QTVICNVAHPASKVD 212 (220)
T ss_dssp CCSCSSSEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEE--EEEEEECGGGTTT-SCCEEEEEEGGGTEE
T ss_pred ccCCCCcEEEEEEEEEEeCCCeEEEEecCCcccceEEcCCcccCCeEEE--EEEEEEcchhcCC-ceEEEEEEECCccEe
Confidence 35689999999999998 999 99999988631 1110 12222 3579999998877 999999999999776
Q ss_pred EEEE
Q psy10160 211 NAVT 214 (558)
Q Consensus 211 ~~~~ 214 (558)
..+.
T Consensus 213 ~~~~ 216 (220)
T 1pz5_B 213 LIKE 216 (220)
T ss_dssp EEEE
T ss_pred eeec
Confidence 6544
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-13 Score=124.84 Aligned_cols=74 Identities=20% Similarity=0.415 Sum_probs=60.7
Q ss_pred eCCCcEEEEeEeeccCCCeEEEEECCEEeccCCc-eEEEccCCeEEEccC-CCCCCeEEEEEEEeCCcee-eEEEEEEE
Q psy10160 142 GVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV-HYRITESNRLHINQA-NATDSGEYRCVASNSYTSD-ENAVTIRV 217 (558)
Q Consensus 142 ~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~-~~~~~~~~sL~I~~v-~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 217 (558)
.+|+.++|.|. |.|.|.+.|+|++..+..... +.....+++|.|.++ +.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 126 ~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 126 ISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp EETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred ecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence 48999999999 889999999999998865421 222235789999999 9999999999999999974 56666665
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=122.99 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=87.7
Q ss_pred eEeeCCCcEEEEeEeec--cCCCeEEEEECCEEec---------cCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 139 QVFGVGSDISIPCDVDG--YPIPQVFWYKDGQVIE---------NDGVHYRITESNRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g--~P~p~i~W~~~g~~l~---------~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
..+.+|+.+.|.|...+ .|.|.|.|+|++..+. ....++.+..+++|.|.+++.+|+|.|+|.|.|..|
T Consensus 6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g 85 (176)
T 1hng_A 6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 85 (176)
T ss_dssp EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCC
Confidence 45689999999996544 6677899999997552 123477777788999999999999999999999999
Q ss_pred ee--eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhh
Q psy10160 208 SD--ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA 276 (558)
Q Consensus 208 ~~--~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~ 276 (558)
.. +..+.|.|..++..|.+ ...+ .. ....|.+.|.|+|.+.|++++...
T Consensus 86 ~~~~~~~~~l~V~~~~~~p~i-----------~~~~------~~---v~L~C~~~g~p~p~i~W~~~g~~l 136 (176)
T 1hng_A 86 TRILNKALDLRILEMVSKPMI-----------YWEC------SN---ATLTCEVLEGTDVELKLYQGKEHL 136 (176)
T ss_dssp CEEEEEEEEEEEECCCCCCEE-----------EEET------TT---TEEEEECSSCSSCEEEEEETTEEE
T ss_pred CEEEEEEEEEEEeCCCCCCEE-----------EecC------Cc---EEEEEEecCCCCcEEEEEECCEEC
Confidence 87 67788888654322221 1111 01 235676779999999999987543
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=122.83 Aligned_cols=132 Identities=20% Similarity=0.296 Sum_probs=92.9
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEcc-----CCeEEEccCCCCCCeEEEEEEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE-----SNRLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-----~~sL~I~~v~~~D~G~Y~C~a~ 203 (558)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.... ++.... .++|.|.+++.+|+|.|+|.+.
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 80 (182)
T 1rhf_A 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLD-QLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE 80 (182)
T ss_dssp -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSE-EEEEEEETTEEEEEEEESSCCGGGCEEEEEEES
T ss_pred CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCC-ceEEEecCCCceEEEEEeecCcccCeEEEEEEE
Confidence 4566677788889999999999999999999999999999887653 332222 2589999999999999999999
Q ss_pred eCCcee-eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCC-cccccchhhhh
Q psy10160 204 NSYTSD-ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPS-YGPHIKRAVEA 276 (558)
Q Consensus 204 N~~G~~-~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~-~~~w~~~~l~~ 276 (558)
|..|.. +..+.|.|..+| .+...+ .. ..+..|.... ..|.+.|.|+| .+.|++++...
T Consensus 81 ~~~~~~~~~~~~l~V~~~p---~~~~~~---~~------~~~~~g~~~~---l~C~~~g~p~p~~v~W~~~~~~~ 140 (182)
T 1rhf_A 81 DGGETEISQPVWLTVEGVP---FFTVEP---KD------LAVPPNAPFQ---LSCEAVGPPEPVTIVWWRGTTKI 140 (182)
T ss_dssp SCTTCEECCCEEEEEECSC---EEEECC---CC------EEECTTCCEE---EEEEEECSSSCCEEEEEETTEEC
T ss_pred cCCCcEEEEEEEEEEecCC---eEEecC---cc------eEecCCCEEE---EEeEecCCCCCCEEEEEcCCeEC
Confidence 997754 567888886543 222111 11 1122333344 44555689999 89999987554
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-13 Score=124.71 Aligned_cols=133 Identities=17% Similarity=0.207 Sum_probs=95.3
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEec-----------cCCceEEEccCCeEEEccCCCCCCeE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIE-----------NDGVHYRITESNRLHINQANATDSGE 197 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~-----------~~~~~~~~~~~~sL~I~~v~~~D~G~ 197 (558)
|..+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+. ....++... +++|.|.+++.+|+|.
T Consensus 1 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~L~i~~v~~~D~G~ 79 (212)
T 1f97_A 1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS-SSGITFSSVTRKDNGE 79 (212)
T ss_dssp CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE-TTEEEESCCCGGGCEE
T ss_pred CceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee-ceeEEEcccCcccCeE
Confidence 3456677788889999999999999999999999999875521 112244443 3789999999999999
Q ss_pred EEEEEEeCCc--eeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEecc-CCCCCCCcccccchhh
Q psy10160 198 YRCVASNSYT--SDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCT-RAGQLPSYGPHIKRAV 274 (558)
Q Consensus 198 Y~C~a~N~~G--~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~-~~g~~~~~~~w~~~~l 274 (558)
|+|.+.|..| ..+..+.|.|..++..+.... . ..+..|.... ..|. ..+.|+|.+.|++++.
T Consensus 80 Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~-----~-------~~~~~g~~~~---l~C~~~~~~p~~~i~W~~~~~ 144 (212)
T 1f97_A 80 YTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISV-----P-------SSVTIGNRAV---LTCSEHDGSPPSEYSWFKDGI 144 (212)
T ss_dssp EEEEEEETTSSSEEEEEEEEEEEBCCCCCEEEC-----C-------SEEETTSCEE---EEEECSCCBSCCEEEEEETTE
T ss_pred EEEEEEccCCCcccEEEEEEEEEcCCCCcccCC-----c-------cccCCCCeEE---EEEEcccCcCCCEEEEEeCCc
Confidence 9999999977 556778888875543222211 1 1122333344 4555 5689999999999976
Q ss_pred -hhh
Q psy10160 275 -EAE 277 (558)
Q Consensus 275 -~~~ 277 (558)
...
T Consensus 145 ~~l~ 148 (212)
T 1f97_A 145 SMLT 148 (212)
T ss_dssp ESBC
T ss_pred cccc
Confidence 443
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=8e-14 Score=114.40 Aligned_cols=92 Identities=23% Similarity=0.342 Sum_probs=72.7
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeecc---CCCeEEEEECCE-EeccC-CceEEEcc---------CCeEEEccCCCCC
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGY---PIPQVFWYKDGQ-VIEND-GVHYRITE---------SNRLHINQANATD 194 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~---P~p~i~W~~~g~-~l~~~-~~~~~~~~---------~~sL~I~~v~~~D 194 (558)
++.|...|.+..+.+|+.++|.|.+.|. |.|.|.|+|+.. .+... +.++.+.. +.+|.|.+++.+|
T Consensus 12 ~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 91 (118)
T 2edn_A 12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGD 91 (118)
T ss_dssp SSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTT
T ss_pred cceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhh
Confidence 4456667888999999999999999885 799999999741 22111 22333321 3579999999999
Q ss_pred CeEEEEEEEeCCceeeEEEEEEEecc
Q psy10160 195 SGEYRCVASNSYTSDENAVTIRVEGI 220 (558)
Q Consensus 195 ~G~Y~C~a~N~~G~~~~~~~l~V~~~ 220 (558)
+|.|+|.|.|..|..++.+.|.|..+
T Consensus 92 ~G~Y~Cevsn~~g~~s~~~~L~V~~~ 117 (118)
T 2edn_A 92 RGYYRLEVKAKDTCDSCGFNIDVEAP 117 (118)
T ss_dssp CSCEEEEEECSSCEEEEEECCEEECC
T ss_pred CEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence 99999999999999999999999754
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-13 Score=111.27 Aligned_cols=91 Identities=26% Similarity=0.476 Sum_probs=76.3
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCC---eEEEccCCCCCCeEEEEEEEe
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~N 204 (558)
.||.+...+....+.+|+.+.|.|.+.+ |.|.+.|+|++..+..+. ++.+..++ +|.|.+++.+|+|.|+|.|.|
T Consensus 7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 84 (103)
T 2edf_A 7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQ-KYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA 84 (103)
T ss_dssp CCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSS-SEEEEEETTEEEEEESSCCTTTCSEEEEECSS
T ss_pred CCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCC-CEEEEECCCEEEEEECCCCcccCEEEEEEEcc
Confidence 5778888888899999999999999998 888999999999887654 55555444 699999999999999999999
Q ss_pred CCceeeEEEEEEEeccCCCC
Q psy10160 205 SYTSDENAVTIRVEGIFIHP 224 (558)
Q Consensus 205 ~~G~~~~~~~l~V~~~~~~p 224 (558)
....+.|.|..++.+|
T Consensus 85 ----~~~~~~l~V~~~p~~~ 100 (103)
T 2edf_A 85 ----SKSTASLHVEEKASGP 100 (103)
T ss_dssp ----CEEEEEEEECCCSSSS
T ss_pred ----CCcEEEEEEeCCCCCC
Confidence 4677888897665443
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.5e-14 Score=130.80 Aligned_cols=159 Identities=10% Similarity=0.023 Sum_probs=98.6
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEee-ccCCCeEEEEECCEEeccCCceEEEccC---C--eEEEccCCCCCCeEEEEEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIENDGVHYRITES---N--RLHINQANATDSGEYRCVA 202 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~---~--sL~I~~v~~~D~G~Y~C~a 202 (558)
+|.|.... ...+.+|+.+.|.|.+. +.|.|.+.|+|||.++..+. ++.+..+ + +|.|.+++.+|+|.|+|.|
T Consensus 3 ~p~~~~~~-~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~-~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a 80 (207)
T 3rbs_A 3 DPFTKSEL-AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGP-KYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL 80 (207)
T ss_dssp ---CCEEE-EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSS-SCEEEECTTTCEEEEEESCCCGGGCEEEEEEE
T ss_pred CCeeecCC-ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCC-CEEEEEeCCCCEEEEEECCCChhhCEEEEEEE
Confidence 34444433 56788999999999986 47999999999999997654 4443322 2 6999999999999999999
Q ss_pred EeCCceeeEEEEEEEeccC------------------CCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCC-C
Q psy10160 203 SNSYTSDENAVTIRVEGIF------------------IHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQ-L 263 (558)
Q Consensus 203 ~N~~G~~~~~~~l~V~~~~------------------~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~-~ 263 (558)
.| |.......+.+.... .+|.+... . ...+..| ......|.+.|. |
T Consensus 81 ~N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~---------~-~~~v~~g---~~v~l~C~v~g~~P 145 (207)
T 3rbs_A 81 QD--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY---------L-SWEVTGE---CNVLLKCKVANIKK 145 (207)
T ss_dssp EE--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEE---------E-EEEEETT---TEEEEEEEEESCCT
T ss_pred EC--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEec---------C-CcEEcCC---CcEEEEEEEeCCCC
Confidence 99 555544444332110 01221110 0 1122233 334455666688 9
Q ss_pred CCcccccchhhhhhhhhhhhhhcc--cccchhhhhhhHHHhhc
Q psy10160 264 PSYGPHIKRAVEAEAAAADKKRRS--RRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 264 ~~~~~w~~~~l~~~~~~~~~~~~g--rth~q~a~~~t~g~~~~ 304 (558)
+|.+.|++++..+.....-....+ ..++..+.+...|.|-.
T Consensus 146 ~p~i~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 188 (207)
T 3rbs_A 146 ETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEV 188 (207)
T ss_dssp TCEEEEEETTEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEE
T ss_pred CCEEEEEECCEECCCCCceEcCCCEEEEEECCCCcccCEEEEE
Confidence 999999999876644321111122 24556666666666654
|
| >2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-13 Score=125.57 Aligned_cols=69 Identities=22% Similarity=0.414 Sum_probs=52.6
Q ss_pred EeeCCCcEEEEeEeecc-CC--CeEEEEECCEEecc--------CCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 140 VFGVGSDISIPCDVDGY-PI--PQVFWYKDGQVIEN--------DGVHYRITESNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 140 ~v~~G~~v~L~C~~~g~-P~--p~i~W~~~g~~l~~--------~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
.+.+|+.++|.|.+.|. |. |.+.|++++..+.. .+..|.. ...|.|.+...+|.|.|+|.|.|..|.
T Consensus 133 ~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~d~g~ytC~v~n~~~~ 210 (220)
T 2fbj_H 133 PALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTM--SNQLTLPAVECPEGESVKCSVQHDSNP 210 (220)
T ss_dssp SSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEE--EEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred cccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEecCceECCCCCEEE--EEEEEECHHHcCCCCeEEEEEEcCCCc
Confidence 35689999999999987 76 78999999876521 1112221 125899999999999999999999987
Q ss_pred ee
Q psy10160 209 DE 210 (558)
Q Consensus 209 ~~ 210 (558)
..
T Consensus 211 ~~ 212 (220)
T 2fbj_H 211 VQ 212 (220)
T ss_dssp CE
T ss_pred eE
Confidence 64
|
| >3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ... | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=127.78 Aligned_cols=70 Identities=19% Similarity=0.297 Sum_probs=52.8
Q ss_pred EeeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccC--C-----ceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceee
Q psy10160 140 VFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIEND--G-----VHYRITESNRLHINQANATDSGEYRCVASNSYTSDE 210 (558)
Q Consensus 140 ~v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~--~-----~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~ 210 (558)
.+.+|+.+.|.|.+.|. |.| .+.|++++..+... . ..+. ..+.|.|.++..+| |.|+|.|.|..|...
T Consensus 129 ~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 205 (210)
T 3d9a_H 129 AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYT--LSSSVTVPSSTWPS-ETVTCNVAHPASSTK 205 (210)
T ss_dssp SCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEE--EEEEEEEEGGGTTT-SCCEEEEEEGGGTEE
T ss_pred ccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcCCccCCCcEE--EEEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence 35689999999999997 888 99999998754211 1 1111 12369999998877 999999999998765
Q ss_pred EE
Q psy10160 211 NA 212 (558)
Q Consensus 211 ~~ 212 (558)
..
T Consensus 206 ~~ 207 (210)
T 3d9a_H 206 VD 207 (210)
T ss_dssp EE
T ss_pred cc
Confidence 43
|
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-13 Score=126.08 Aligned_cols=124 Identities=16% Similarity=0.119 Sum_probs=83.0
Q ss_pred ceEeeCCCcEEEEeE---eeccCCCeEEEEECCEEecc-------C---------CceEEE---ccCCeEEEccCCCCCC
Q psy10160 138 TQVFGVGSDISIPCD---VDGYPIPQVFWYKDGQVIEN-------D---------GVHYRI---TESNRLHINQANATDS 195 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~---~~g~P~p~i~W~~~g~~l~~-------~---------~~~~~~---~~~~sL~I~~v~~~D~ 195 (558)
..++..|+.++|.|. +.+.|.|.+.|+|+|..... . ..++.+ ....+|.|.+++.+|+
T Consensus 2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 81 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 81 (203)
T ss_dssp CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence 456789999999994 67889999999997642211 0 011111 1224799999999999
Q ss_pred eEEEEEEEeCCceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhh
Q psy10160 196 GEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVE 275 (558)
Q Consensus 196 G~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~ 275 (558)
|.|+|.|.|..|.....+.|.|..|+ .+.. ......+..|.... ..|.+.|.|+|.+.|++++..
T Consensus 82 G~Y~C~a~n~~g~~~~~~~l~V~~p~---~~~~---------~~~~~~v~~g~~~~---l~C~~~G~P~P~v~W~~~~~~ 146 (203)
T 4fa8_A 82 GNYLCRMKLGETEVTKQEHLSVVKPL---TLSV---------HSERSQFPDFSVLT---VTCTVNAFPHPHVQWLMPEGV 146 (203)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEEE---EEEE---------EEEECCSSCSCCEE---EEEEEEEESCCEEEECCC---
T ss_pred eEEEEEEEcCCCcEEEEEEEEecCCc---eeee---------cceeEEEcCCCEEE---EEEEcCCCCCCEEEEEECCee
Confidence 99999999999999999999996543 1110 00111122333334 455566999999999987543
Q ss_pred h
Q psy10160 276 A 276 (558)
Q Consensus 276 ~ 276 (558)
.
T Consensus 147 ~ 147 (203)
T 4fa8_A 147 E 147 (203)
T ss_dssp -
T ss_pred e
Confidence 3
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.4e-13 Score=123.85 Aligned_cols=161 Identities=17% Similarity=0.221 Sum_probs=105.6
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
..+.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... .+++|.|.+++.+|+|.|+|.+.|..|
T Consensus 17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~ 89 (218)
T 3k0w_A 17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG-------NTSELIFNAVHVKDAGFYVCRVNNNFT 89 (218)
T ss_dssp --CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC-------CSSEEEETTCCGGGCEEEEEEEECTTC
T ss_pred CCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC-------CCCEEEEccCChhhCeEeEEEEEcCCC
Confidence 4567778888999999999999999999999999999999887653 346899999999999999999999988
Q ss_pred ee-eEEEEEEEeccCCCC--CCCCCCccccceeEEe--ceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhhh
Q psy10160 208 SD-ENAVTIRVEGIFIHP--SCRDLPLFANCKLIVE--GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAAD 282 (558)
Q Consensus 208 ~~-~~~~~l~V~~~~~~p--~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~~ 282 (558)
.. +..+.|.|...+... .....+. ....+... ...+..|.. ....|.+.|.|++.+.|++++.......
T Consensus 90 ~~~s~~~~l~V~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~v~~G~~---v~L~C~~~g~p~~~v~W~~~~~~~~~~~-- 163 (218)
T 3k0w_A 90 FEFSQWSQLDVCDIPESFQRSVDGVSE-SKLQICVEPTSQKLMPGST---LVLQCVAVGSPIPHYQWFKNELPLTHET-- 163 (218)
T ss_dssp CEECCCEEEEEECCCGGGCTTCCSBCC-SSCEEEECCCCEEECTTCC---EEEECEEEBSSCCEEEEEETTEECTTCC--
T ss_pred CceeeEEEEEEEccCcccccccccccC-CCceEEECCCceeecCCCc---EEEEEEecccCCCeEEEEECCEECCCCC--
Confidence 65 566778886543110 0000000 00011111 112233333 4455656689999999999875543222
Q ss_pred hhhcccccchhhhhhhHHHhhc
Q psy10160 283 KKRRSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 283 ~~~~grth~q~a~~~t~g~~~~ 304 (558)
.+...+..+.....|.|..
T Consensus 164 ---~~~L~i~~v~~~d~G~Y~C 182 (218)
T 3k0w_A 164 ---KKLYMVPYVDLEHQGTYWC 182 (218)
T ss_dssp ---SSEEEESSCCGGGCEEEEE
T ss_pred ---CCEEEEeecChhcCEEEEE
Confidence 1233444555555555544
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.5e-13 Score=120.92 Aligned_cols=136 Identities=18% Similarity=0.251 Sum_probs=94.5
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEecc-CCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN-DGVHYRITESNRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~-~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
+|.+...+.+..+.+|+.+.|.|.+.+.|.|.+.|++++..+.. ...++....+++|.|.+++.+|+|.|+|.+.|..+
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 81 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR 81 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTT
T ss_pred CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCC
Confidence 56777888889999999999999999999999999999988764 34577777788999999999999999999999875
Q ss_pred eee--EEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhh
Q psy10160 208 SDE--NAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAE 277 (558)
Q Consensus 208 ~~~--~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~ 277 (558)
... ..+.+.|..++ .....+... .. .+.. +......|.+.|.|.+.+.|++++....
T Consensus 82 ~~~~~~~~~l~v~~~p---~~~~~~~~~--~~-----~~~~---g~~v~l~C~~~g~p~~~v~W~~~g~~~~ 140 (189)
T 2v5t_A 82 GEIDFRDIIVIVNVPP---AISMPQKSF--NA-----TAER---GEEMTFSCRASGSPEPAISWFRNGKLIE 140 (189)
T ss_dssp TEEEEEEEEEEEEEEE---EEECSCCEE--EE-----ETTS---CCCEEEECEEEEESCCEEEEEETTEECC
T ss_pred CceEEEEEEEEecCCC---Ccccccccc--cc-----cccC---CCcEEEEEEEccCCCCeEEEEECCEECc
Confidence 443 45566665433 111111000 00 1112 3334456666688999999999876543
|
| >1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H | Back alignment and structure |
|---|
Probab=99.44 E-value=7.1e-13 Score=123.56 Aligned_cols=71 Identities=14% Similarity=0.314 Sum_probs=54.5
Q ss_pred eeCCCcEEEEeEeecc-CCC-eEEEEE-CCEEecc--------CCceEEEccCCeEEEccCCC--CCCeEEEEEEEeCCc
Q psy10160 141 FGVGSDISIPCDVDGY-PIP-QVFWYK-DGQVIEN--------DGVHYRITESNRLHINQANA--TDSGEYRCVASNSYT 207 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~-P~p-~i~W~~-~g~~l~~--------~~~~~~~~~~~sL~I~~v~~--~D~G~Y~C~a~N~~G 207 (558)
+.+|+.+.|.|.+.|. |.| .+.|++ +|..+.. .+..|.. .+.|.|..... +|.|.|+|.|.|..+
T Consensus 138 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~~~d~g~y~C~v~n~~~ 215 (223)
T 1dee_B 138 SNPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAA--TSQVLLPSKDVAQGTNEHVVCKVQHPNG 215 (223)
T ss_dssp CCSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEE--EEEEEEECTTTTSTTCCEEEEEEECTTC
T ss_pred cCCCCcEEEEEEEEEEeCCCeEEEeEccCCCccceeEECCccccCCeEEE--EEEEEEcHHHhccCCCCEEEEEEEeCCC
Confidence 4689999999999987 877 899999 8877643 0123322 23688888876 889999999999998
Q ss_pred eeeEEE
Q psy10160 208 SDENAV 213 (558)
Q Consensus 208 ~~~~~~ 213 (558)
.....+
T Consensus 216 ~~~~~~ 221 (223)
T 1dee_B 216 NKEKDV 221 (223)
T ss_dssp CEEEEE
T ss_pred CCcccc
Confidence 876543
|
| >3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-13 Score=130.79 Aligned_cols=69 Identities=17% Similarity=0.313 Sum_probs=51.0
Q ss_pred eeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccC-Cce--EEEccCC------eEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 141 FGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIEND-GVH--YRITESN------RLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~-~~~--~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
+.+|+.++|.|.+.|. |.| .+.|+|+|..+... ... .....++ .|.|.++..+|+|.|+|.|.|.....
T Consensus 162 ~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 241 (252)
T 3bkj_L 162 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 241 (252)
T ss_dssp HHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred hcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence 3478999999999984 544 69999999987643 101 1111222 48999999999999999999976554
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.2e-13 Score=109.82 Aligned_cols=93 Identities=25% Similarity=0.483 Sum_probs=74.5
Q ss_pred eeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCC----ceEEEccCCeEEEc-----cCCCCCCeE
Q psy10160 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG----VHYRITESNRLHIN-----QANATDSGE 197 (558)
Q Consensus 127 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~----~~~~~~~~~sL~I~-----~v~~~D~G~ 197 (558)
..||.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.... .+.....++.+.+. +++.+|+|.
T Consensus 7 ~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~ 86 (117)
T 2v9t_A 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV 86 (117)
T ss_dssp CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEE
T ss_pred cCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEE
Confidence 368888888889999999999999999999999999999999887542 12334455655554 457999999
Q ss_pred EEEEEEeCCceee-EEEEEEEec
Q psy10160 198 YRCVASNSYTSDE-NAVTIRVEG 219 (558)
Q Consensus 198 Y~C~a~N~~G~~~-~~~~l~V~~ 219 (558)
|+|.|.|..|... ..+.|.|..
T Consensus 87 Y~C~a~N~~G~~~s~~~~l~~~~ 109 (117)
T 2v9t_A 87 YVCVARNYLGEAVSHDASLEVAA 109 (117)
T ss_dssp EEEEEEETTEEEECCCEEEEEC-
T ss_pred EEEEEEeCccceEeeeEEEEhhh
Confidence 9999999999885 557777753
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-12 Score=118.13 Aligned_cols=124 Identities=17% Similarity=0.242 Sum_probs=90.5
Q ss_pred CcEEEecCCceEeeC-CCcEEEEeEeeccCC--CeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeC
Q psy10160 129 PVKVNITLETQVFGV-GSDISIPCDVDGYPI--PQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 129 p~~~~~~~~~~~v~~-G~~v~L~C~~~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
||.+... ....+.+ |+.+.|.|.+.+.|. |.+.|+|++..+..... + ..+++|.|.+++.+|+|.|+|.+.|.
T Consensus 3 ~P~i~~~-~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~-~--~~~~~L~i~~~~~~d~G~Y~C~~~n~ 78 (190)
T 2wv3_A 3 EPRIVTS-EEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK-N--ASNMEYRINKPRAEDSGEYHCVYHFV 78 (190)
T ss_dssp CCEEEEC-CCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCB-C--CSEEEEEESSCCGGGCEEEEEEEEET
T ss_pred CCccccc-ceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccce-E--eccEEEEEecCCcccCEEEEEEEEeC
Confidence 5666554 4455656 999999999999987 78999999999876432 1 24568999999999999999999999
Q ss_pred CceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccch
Q psy10160 206 YTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKR 272 (558)
Q Consensus 206 ~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~ 272 (558)
|.....+.|.|..++ .+...+ . ...+..|....+. |.+.|.|+|.+.|+++
T Consensus 79 -~~~~~~~~l~V~~~p---~~~~~~---~------~~~~~~g~~v~l~---C~~~g~p~p~i~W~~~ 129 (190)
T 2wv3_A 79 -SAPKANATIEVKAAP---DITGHK---R------SENKNEGQDAMMY---CKSVGYPHPEWMWRKK 129 (190)
T ss_dssp -TEEEEEEEEEEECCC---EEEEEC---S------EEEEETTSCEEEE---EEEECSSCCEEEEEEE
T ss_pred -CcccccEEEEEecCC---cccccC---C------cceeeCCCcEEEE---EEeCccCCCceEEEEc
Confidence 888899999996542 222111 1 1112333344444 4456899999999994
|
| >3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A | Back alignment and structure |
|---|
Probab=99.44 E-value=4.5e-13 Score=127.79 Aligned_cols=90 Identities=14% Similarity=0.350 Sum_probs=62.4
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeeccCCC-eEEEEEC--CEEec----c-------CCceEEEcc---CCeEEEccCCC
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDGYPIP-QVFWYKD--GQVIE----N-------DGVHYRITE---SNRLHINQANA 192 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p-~i~W~~~--g~~l~----~-------~~~~~~~~~---~~sL~I~~v~~ 192 (558)
+.+...+....+.+|+.++|.|.+.+.|.| .+.|+|. +..+. . ...++.... ..+|.|.+++.
T Consensus 142 ~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 221 (257)
T 3gkz_A 142 IVLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEA 221 (257)
T ss_dssp CCEECSCSEEEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred eEEEcCCceEEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCCh
Confidence 344455666788999999999999999988 8999983 22211 0 012443332 23699999999
Q ss_pred CCCeEEEEEEEeCCcee-eEEEEEEEec
Q psy10160 193 TDSGEYRCVASNSYTSD-ENAVTIRVEG 219 (558)
Q Consensus 193 ~D~G~Y~C~a~N~~G~~-~~~~~l~V~~ 219 (558)
+|+|.|.|.|.|..... ..-..|.|..
T Consensus 222 ~D~G~Y~C~~~~~~~~~fg~gt~l~v~~ 249 (257)
T 3gkz_A 222 EDAASYFCHQWSSFPFTFGSGTKLEIKR 249 (257)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred HHCEEEEEEEccCCceEEcCCEEEEEEe
Confidence 99999999999865433 2334566653
|
| >2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.43 E-value=8.2e-14 Score=130.79 Aligned_cols=72 Identities=15% Similarity=0.240 Sum_probs=53.1
Q ss_pred eCCCcEEEEeEeeccCCC--eEEEEECCEEeccCCce--EEEcc------CCeEEEccCCCCCCeEEEEEEEeCCceeeE
Q psy10160 142 GVGSDISIPCDVDGYPIP--QVFWYKDGQVIENDGVH--YRITE------SNRLHINQANATDSGEYRCVASNSYTSDEN 211 (558)
Q Consensus 142 ~~G~~v~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~--~~~~~------~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~ 211 (558)
.+|+.++|.|.+.|.|+| .+.|+|+|..+...... ..... .+.|.|.++..+|+|.|+|.|.|..+....
T Consensus 148 ~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~ 227 (234)
T 2j6e_L 148 LQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK 227 (234)
T ss_dssp HTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCE
T ss_pred hcCCceEEEEEEEEEcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEE
Confidence 468899999999986443 89999999988643110 00111 135899999999999999999999877554
Q ss_pred EE
Q psy10160 212 AV 213 (558)
Q Consensus 212 ~~ 213 (558)
++
T Consensus 228 ~~ 229 (234)
T 2j6e_L 228 TV 229 (234)
T ss_dssp EE
T ss_pred ec
Confidence 43
|
| >3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-13 Score=127.52 Aligned_cols=70 Identities=23% Similarity=0.378 Sum_probs=52.8
Q ss_pred cCCceEeeCCCcEEEEeEeeccC--CCeEEEEEC--CEEecc----------------CCceEEEccCC-----eEEEcc
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYP--IPQVFWYKD--GQVIEN----------------DGVHYRITESN-----RLHINQ 189 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~--g~~l~~----------------~~~~~~~~~~~-----sL~I~~ 189 (558)
.+....+.+|+.++|.|.+.+.| .|.+.|+|+ +..+.. ...++.+..++ +|.|.+
T Consensus 137 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 216 (250)
T 3esu_F 137 QSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSS 216 (250)
T ss_dssp ECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred cCCceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECC
Confidence 34556788999999999999877 788999997 432210 01345544322 699999
Q ss_pred CCCCCCeEEEEEEEe
Q psy10160 190 ANATDSGEYRCVASN 204 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N 204 (558)
++.+|+|.|.|.+.|
T Consensus 217 v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 217 LTSVDSAVYFCARSG 231 (250)
T ss_dssp CCGGGCEEEEEEEEC
T ss_pred CCcccCEEEEEEEec
Confidence 999999999999998
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.43 E-value=8.2e-13 Score=105.66 Aligned_cols=87 Identities=22% Similarity=0.430 Sum_probs=70.1
Q ss_pred CcEEEe-cCCceEeeCCCcEEEEeEee-ccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 129 PVKVNI-TLETQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 129 p~~~~~-~~~~~~v~~G~~v~L~C~~~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
|+.+.. .+....+.+|+.+.|.|.+. |.|.|.+.|+|++....... ....+++|.|.+++.+|+|.|+|.|.|..
T Consensus 9 ~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 85 (98)
T 1gl4_B 9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR---AMDFNGILTIRNVQPSDAGTYVCTGSNMF 85 (98)
T ss_dssp CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT---EEEETTEEEECSCCGGGCEEEEEEEECSS
T ss_pred CcEEEEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCce---eecCCCEEEEeCCChhhCEEEEEEecCCC
Confidence 444444 34566889999999999998 68999999999854433322 23456799999999999999999999999
Q ss_pred ceeeEEEEEEEe
Q psy10160 207 TSDENAVTIRVE 218 (558)
Q Consensus 207 G~~~~~~~l~V~ 218 (558)
|.....+.|.|.
T Consensus 86 g~~~~~~~l~V~ 97 (98)
T 1gl4_B 86 AMDQGTATLHVQ 97 (98)
T ss_dssp CEEEEEEEEEEC
T ss_pred CccccEEEEEEe
Confidence 999999998884
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.9e-13 Score=125.93 Aligned_cols=133 Identities=17% Similarity=0.199 Sum_probs=93.4
Q ss_pred CcEEEec----CCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCc---eEEEccCCeEEEccCCCCCCeEEEEE
Q psy10160 129 PVKVNIT----LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV---HYRITESNRLHINQANATDSGEYRCV 201 (558)
Q Consensus 129 p~~~~~~----~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~---~~~~~~~~sL~I~~v~~~D~G~Y~C~ 201 (558)
+|.+..+ +....+.+|+.+.|.|.+.|.|.|.+.|+|++..+..... ......+++|.|.+++.+|+|.|+|.
T Consensus 11 ~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 90 (241)
T 3grw_A 11 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCV 90 (241)
T ss_dssp CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEE
T ss_pred CceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEE
Confidence 5555433 3467789999999999999999999999999998865321 12234456899999999999999999
Q ss_pred EEeCCceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccc
Q psy10160 202 ASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIK 271 (558)
Q Consensus 202 a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~ 271 (558)
+.|..|.....+.|.|......+.......... ..+..| ......|.+.+.|++.+.|++
T Consensus 91 ~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~-------~~~~~g---~~v~L~C~~~~~p~p~v~W~~ 150 (241)
T 3grw_A 91 VENKFGSIRQTYTLDVLERSPHRPILQAGLPAN-------QTAVLG---SDVEFHCKVYSDAQPHIQWLK 150 (241)
T ss_dssp EEETTEEEEEEEEEEEECCCCCCCEEEECTTCS-------EECCTT---CCEEEEEEEECSSCCEEEEEE
T ss_pred EeecCCceEEEEEEEEeccCCCCceeecCCCcc-------ceecCC---CEEEEEEEEecCCCCEEEEEE
Confidence 999999998889999875432111110000010 112223 333355556689999999999
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-12 Score=125.68 Aligned_cols=125 Identities=10% Similarity=0.197 Sum_probs=78.2
Q ss_pred ceEeeCCCcEEEEeEeeccCCC--eEEEEECCEEeccCCceEEEc-c------CCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIP--QVFWYKDGQVIENDGVHYRIT-E------SNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~~~~~-~------~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
...+.+|+.+.|.|.+.|.|+| .+.|+|+|..+......+... . .+.|.|.....+|.|.|+|.|.|..|.
T Consensus 126 ~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~ 205 (327)
T 2wng_A 126 AARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQ 205 (327)
T ss_dssp SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSC
T ss_pred ccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccC
Confidence 4567899999999999999877 899999999886533221111 1 125778777777789999999999876
Q ss_pred e---eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCC--cccccchhhhhh
Q psy10160 209 D---ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPS--YGPHIKRAVEAE 277 (558)
Q Consensus 209 ~---~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~--~~~w~~~~l~~~ 277 (558)
. ..+..+.+. ...+|.+. .....+..|....+. |.+.|.+++ .+.|++++....
T Consensus 206 ~~~~~~~~~~~~~-v~~~P~i~-----------~~~~~~~~G~~v~l~---C~~~g~~p~~~~v~W~k~g~~l~ 264 (327)
T 2wng_A 206 GDPLRGTANLSET-IRVPPTLE-----------VTQQPVRAENQVNVT---CQVRKFYPQRLQLTWLENGNVSR 264 (327)
T ss_dssp SCCEEEEEEGGGT-BCBCCEEE-----------EEEECCSSTTCCEEE---EEEEEEBSSCEEEEEEETTEEEE
T ss_pred CCcccceEEeccc-cCCCCEEE-----------EecCCcCCCCcEEEE---EEEccccCCCcEEEEEECCeEcc
Confidence 3 233333221 11222211 111113344444444 445575444 799999976654
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=128.74 Aligned_cols=171 Identities=10% Similarity=-0.043 Sum_probs=102.3
Q ss_pred eeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEee-ccCCCeEEEEECCEEeccCCceEEEccC------CeEEEcc
Q psy10160 117 YLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIENDGVHYRITES------NRLHINQ 189 (558)
Q Consensus 117 ~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~------~sL~I~~ 189 (558)
.......+.+..+|.+...+....+..|+.+.+.|.+. |+|.|.+.|++++..+.... ......+ +.|.|.+
T Consensus 105 ~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~~s~l~i~~ 183 (313)
T 4fqp_A 105 SRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTS-QVPGFLSGTVTVTSLWILVP 183 (313)
T ss_dssp EEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEE-EEECSSTTCEEEEEEEEECC
T ss_pred ceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccccc-eeeeecccccccceeeeecc
Confidence 33334444455667666666666778899999999864 78999999999987765422 2222222 2588999
Q ss_pred CCCCCCeEEEEEEEeCCceee--EEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCC-c
Q psy10160 190 ANATDSGEYRCVASNSYTSDE--NAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPS-Y 266 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N~~G~~~--~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~-~ 266 (558)
+..+|+|.|+|.|.|..+... ..+.|.|..+| .+...+ ....... - +......|.+.|.|+| .
T Consensus 184 ~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P---~v~~~~--~~~~~~~------~---g~~v~l~C~~~g~P~p~~ 249 (313)
T 4fqp_A 184 SSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPP---EVSISG--YDNNWYL------G---QNEATLTCDARSNPEPTG 249 (313)
T ss_dssp CGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEE---EEEEEC--CCSCEET------T---CCCEEEEEEEEEESCCCE
T ss_pred cccccCeeEEEEEEccCcCccceeeeecccccCC---cccccc--ccceeec------C---CCeEEEEEEecCCCCCcE
Confidence 999999999999999877654 44555554332 211000 0111111 1 2333455666689998 5
Q ss_pred ccccchhhhhhhhhhhhhhcccccchhhhhhhHHHhhc
Q psy10160 267 GPHIKRAVEAEAAAADKKRRSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 267 ~~w~~~~l~~~~~~~~~~~~grth~q~a~~~t~g~~~~ 304 (558)
+.|++++..+.... ....+...+..+.....|.|..
T Consensus 250 v~W~~~~~~l~~~~--~~~~~~L~i~~v~~~d~G~Y~C 285 (313)
T 4fqp_A 250 YNWSTTMGPLPPFA--VAQGAQLLIRPVDKPINTTLIC 285 (313)
T ss_dssp EEEEETTBSCCTTE--EEETTEEEECCCSSCCEEEEEE
T ss_pred EEEEECCEECCCce--EEeCCEEEECcCChhhCEEEEE
Confidence 89999976543222 1111233444444454554443
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-13 Score=110.23 Aligned_cols=90 Identities=21% Similarity=0.394 Sum_probs=71.3
Q ss_pred CcEEEecCCc---eEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccC---CeEEEccCCCCCCeEEEEEE
Q psy10160 129 PVKVNITLET---QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES---NRLHINQANATDSGEYRCVA 202 (558)
Q Consensus 129 p~~~~~~~~~---~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~---~sL~I~~v~~~D~G~Y~C~a 202 (558)
||.+...+.. ..+.+|+.+.|.|.+.|.|.| +.|+|++..+..+. ++.+..+ .+|.|.+++.+|+|.|+|.|
T Consensus 7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 84 (104)
T 2e6p_A 7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESE-LLVVKMDGRKHRLILPEAKVQDSGEFECRT 84 (104)
T ss_dssp SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBT-TBEEEEETTEEEEEESSCCTTTCEEEEEEC
T ss_pred CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCC-CEEEEeCCCEEEEEECCCChhhCEEEEEEE
Confidence 5555555665 678999999999999999999 99999999887654 4444332 36999999999999999999
Q ss_pred EeCCceeeEEEEEEEeccCCCC
Q psy10160 203 SNSYTSDENAVTIRVEGIFIHP 224 (558)
Q Consensus 203 ~N~~G~~~~~~~l~V~~~~~~p 224 (558)
.|..+ .+.|.|..++.+|
T Consensus 85 ~n~~~----~~~l~V~~~P~pp 102 (104)
T 2e6p_A 85 EGVSA----FFGVTVQDPSGPS 102 (104)
T ss_dssp SSCCC----CEEEEEECCCCSS
T ss_pred CCceE----EEEEEEcCCCCCc
Confidence 99744 6677787666444
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A | Back alignment and structure |
|---|
Probab=99.42 E-value=8.6e-13 Score=120.97 Aligned_cols=127 Identities=16% Similarity=0.206 Sum_probs=84.6
Q ss_pred EecCCceE-eeCCCcEEEEeEeeccCCCeEEEEECC-EEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceee
Q psy10160 133 NITLETQV-FGVGSDISIPCDVDGYPIPQVFWYKDG-QVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDE 210 (558)
Q Consensus 133 ~~~~~~~~-v~~G~~v~L~C~~~g~P~p~i~W~~~g-~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~ 210 (558)
.+.+.+.. +.+|+.+.|.|.+.|.|.|.+.|++.. ..+ .+.......+++|.|.+++.+|+|.|+|.|.|..|..+
T Consensus 4 ~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~ 81 (202)
T 1vca_A 4 ETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL--NGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLE 81 (202)
T ss_dssp EEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCC--SSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEE
T ss_pred EECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCc--cceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEe
Confidence 34445544 459999999999999999999999843 222 11111222345799999999999999999999999888
Q ss_pred EEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCC---Ccccccchhhhh
Q psy10160 211 NAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLP---SYGPHIKRAVEA 276 (558)
Q Consensus 211 ~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~---~~~~w~~~~l~~ 276 (558)
..+.|.|..++..+.... . ..+..|.... ..|.+.|.++ +.+.|++++..+
T Consensus 82 ~~~~l~V~~~p~~~~~~~-----~-------~~~~~G~~~~---L~C~~~~~~p~~~~~i~W~k~~~~l 135 (202)
T 1vca_A 82 KGIQVEIYSFPKDPEIHL-----S-------GPLEAGKPIT---VKCSVADVYPFDRLEIDLLKGDHLM 135 (202)
T ss_dssp EEEEEEEEBCCSCCEEEE-----S-------SCEETTSCEE---EEEEEEEEBSGGGEEEEEEETTEEE
T ss_pred eEEEEEEEeCCCCCEeCC-----c-------eEEcCCCCEE---EEEEECCcCCCCCeEEEEEeCCeEC
Confidence 899999976542221110 0 1123333344 4455545443 368999997543
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A | Back alignment and structure |
|---|
Probab=99.42 E-value=7e-13 Score=122.07 Aligned_cols=163 Identities=18% Similarity=0.295 Sum_probs=108.9
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCc----eEEEccCCeE-----EEccCCCCCCeEE
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV----HYRITESNRL-----HINQANATDSGEY 198 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~----~~~~~~~~sL-----~I~~v~~~D~G~Y 198 (558)
.||.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..... ......++.+ .|.+++.+|+|.|
T Consensus 8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 87 (212)
T 2v9r_A 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY 87 (212)
T ss_dssp EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEE
T ss_pred CCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEE
Confidence 578888888999999999999999999999999999999998864321 2223344444 4456789999999
Q ss_pred EEEEEeCCcee-eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccC-CCCCCCcccccchhhhh
Q psy10160 199 RCVASNSYTSD-ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTR-AGQLPSYGPHIKRAVEA 276 (558)
Q Consensus 199 ~C~a~N~~G~~-~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~-~g~~~~~~~w~~~~l~~ 276 (558)
+|.+.|..|.. +..+.|.|...+ +.+...+ ....+ .. +......|.+ .+.|++.+.|++++...
T Consensus 88 ~C~~~n~~g~~~~~~~~l~V~~~~--~~~~~~~---~~~~~------~~---g~~~~l~C~~~~~~p~~~v~W~~~~~~l 153 (212)
T 2v9r_A 88 VCVARNYLGEAVSHDASLEVAILR--DDFRQNP---SDVMV------AV---GEPAVMECQPPRGHPEPTISWKKDGSPL 153 (212)
T ss_dssp EEEEEETTEEEECCCEEEEECEEC--SSCSBCC---CCEEE------ET---TSCEEEECBCCCEESCCEEEEEETTEEE
T ss_pred EEEEECCCCceeecceEEEEEecc--ccceeCC---CceEe------cC---CCcEEEEEecCCCCCCCEEEEEECCccC
Confidence 99999999876 456777775432 1111111 11111 12 3334466776 68999999999987655
Q ss_pred hhhh-hhhhhcccccchhhhhhhHHHhhc
Q psy10160 277 EAAA-ADKKRRSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 277 ~~~~-~~~~~~grth~q~a~~~t~g~~~~ 304 (558)
.... ......+...+..+.....|.|..
T Consensus 154 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 182 (212)
T 2v9r_A 154 DDKDERITIRGGKLMITYTRKSDAGKYVC 182 (212)
T ss_dssp CTTSTTEEEETTEEEESSCCGGGCEEEEE
T ss_pred CCCcceEEccCCeEEEeeCCHhhCeeEEE
Confidence 4332 212223445555566666665554
|
| >2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-13 Score=106.88 Aligned_cols=84 Identities=27% Similarity=0.510 Sum_probs=64.3
Q ss_pred eCcEEEecCCceEe--eCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCC---eEEEccCCCCCCeEEEEEE
Q psy10160 128 VPVKVNITLETQVF--GVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRCVA 202 (558)
Q Consensus 128 ~p~~~~~~~~~~~v--~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a 202 (558)
.|+.+..++.+..+ .+|+.+.|.|.+.+ |.|.+.|+|+|.++..++ ++.+..++ +|.|.+++.+|+|.|+|.|
T Consensus 3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~-~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a 80 (91)
T 2lvc_A 3 MPVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESD-FVVLENEGPHRRLVLPATQPSDGGEFQCVA 80 (91)
T ss_dssp CCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCS-SCEEEEETTEEEEEESSCCGGGCSEEEEEC
T ss_pred CCcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeee-eeeEEecCCeEEEEeCCCChhhcEEEEEEE
Confidence 46666555555544 68999999999976 889999999999997754 55554443 7999999999999999998
Q ss_pred EeCCceeeEEEEEEE
Q psy10160 203 SNSYTSDENAVTIRV 217 (558)
Q Consensus 203 ~N~~G~~~~~~~l~V 217 (558)
.|. +.++.|.|
T Consensus 81 ~n~----~~~~~ltV 91 (91)
T 2lvc_A 81 GDE----CAYFTVTI 91 (91)
T ss_dssp SSC----EEEEEEEC
T ss_pred cce----EEEEEEEC
Confidence 664 45555543
|
| >1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=9.1e-13 Score=124.15 Aligned_cols=70 Identities=20% Similarity=0.405 Sum_probs=51.5
Q ss_pred CCceEeeCCCcEEEEeEeeccCC--CeEEEEEC--CEEec----------------cCCceEEEccC-----CeEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPI--PQVFWYKD--GQVIE----------------NDGVHYRITES-----NRLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~--p~i~W~~~--g~~l~----------------~~~~~~~~~~~-----~sL~I~~v 190 (558)
+....+.+|+.++|.|.+.|.|. |.+.|+|+ +..+. ....++.+..+ .+|.|.++
T Consensus 126 ~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 205 (240)
T 1moe_A 126 SGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSL 205 (240)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred CCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcC
Confidence 44567889999999999999874 58999995 22210 01124554322 37999999
Q ss_pred CCCCCeEEEEEEEeC
Q psy10160 191 NATDSGEYRCVASNS 205 (558)
Q Consensus 191 ~~~D~G~Y~C~a~N~ 205 (558)
+.+|+|.|+|.|.+.
T Consensus 206 ~~~D~G~Y~C~a~~~ 220 (240)
T 1moe_A 206 TSEDTAVYYCAPFGY 220 (240)
T ss_dssp CGGGCEEEEEEECST
T ss_pred CHHHCEEEEEEEEec
Confidence 999999999999853
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-14 Score=120.40 Aligned_cols=97 Identities=25% Similarity=0.334 Sum_probs=79.9
Q ss_pred ceeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCe-EEEEECCEEeccC-CceEEEc----c---CCeEEEccCCCCC
Q psy10160 124 GGYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQ-VFWYKDGQVIEND-GVHYRIT----E---SNRLHINQANATD 194 (558)
Q Consensus 124 ~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~-i~W~~~g~~l~~~-~~~~~~~----~---~~sL~I~~v~~~D 194 (558)
+.+..||.+.. +....+.+|+.+.|.|.+.|.|.|. +.|++++..+... ..++.+. . ..+|.|.+++.+|
T Consensus 9 l~V~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 87 (122)
T 2cry_A 9 LTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRAD 87 (122)
T ss_dssp CCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHH
T ss_pred EEEecCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChhh
Confidence 34456788777 7778889999999999999999997 9999999888752 2355442 1 2379999999999
Q ss_pred C-eEEEEEEEeCCceeeEEEEEEEeccC
Q psy10160 195 S-GEYRCVASNSYTSDENAVTIRVEGIF 221 (558)
Q Consensus 195 ~-G~Y~C~a~N~~G~~~~~~~l~V~~~~ 221 (558)
. |.|+|.|.|..|.....+.|.|.++.
T Consensus 88 ~~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 115 (122)
T 2cry_A 88 FQTIYNCTAWNSFGSDTEIIRLKEQGSE 115 (122)
T ss_dssp HHSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred CCceEEEEEECCCCeEEEEEEEEECCCC
Confidence 9 99999999999999999999987543
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.8e-13 Score=110.18 Aligned_cols=87 Identities=16% Similarity=0.307 Sum_probs=72.6
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCC---eEEEccCCCCCCeEEEEEEEe
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~N 204 (558)
.||.+...+.+..+.+|+.+.|.|.+.+.|.| +.|+|++..+..+. ++.+..++ +|.|.+++.+|+|.|+|.|.|
T Consensus 7 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 84 (106)
T 2dlt_A 7 GQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSK-RITISHVGRFHKLVIDDVRPEDEGDYTFVPDG 84 (106)
T ss_dssp CCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCS-SCEEEEETTEEEEEESSCCTTTCSCEEEEEET
T ss_pred CCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCC-CEEEEEeCCEEEEEECCCCcCCCEEEEEEEcc
Confidence 47788888889999999999999999999988 99999999887654 55554444 799999999999999999999
Q ss_pred CCceeeEEEEEEEe
Q psy10160 205 SYTSDENAVTIRVE 218 (558)
Q Consensus 205 ~~G~~~~~~~l~V~ 218 (558)
. ..+..+.|.|.
T Consensus 85 ~--~~~~~~~l~V~ 96 (106)
T 2dlt_A 85 Y--ALSLSAKLNFL 96 (106)
T ss_dssp S--CCCCCBCEEEE
T ss_pred C--CceEEEEEEEE
Confidence 8 44455566665
|
| >4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=103.87 Aligned_cols=83 Identities=23% Similarity=0.391 Sum_probs=70.2
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEE
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVT 214 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 214 (558)
.+....+.+|+.+.|.|.+.| .|.+.|+|+|..+.... ++.+ .+++|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus 7 ~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~-~~~~-~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 82 (95)
T 4hwu_A 7 QPEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNN-RTVL-IGEYLQIKGATPRDSGLYACTAARTVDSETWIFM 82 (95)
T ss_dssp -CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCS-SEEE-ETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred CCCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCc-eEEE-eCCEEEECcCCcccCEEEEEEEccCCCcEEEEEE
Confidence 455677899999999999987 57999999999987654 5544 3578999999999999999999999999999999
Q ss_pred EEEeccC
Q psy10160 215 IRVEGIF 221 (558)
Q Consensus 215 l~V~~~~ 221 (558)
|.|.++.
T Consensus 83 l~V~~~~ 89 (95)
T 4hwu_A 83 VNVTDAA 89 (95)
T ss_dssp EEECCC-
T ss_pred EEEeCCc
Confidence 9996553
|
| >2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=9.8e-13 Score=124.28 Aligned_cols=67 Identities=19% Similarity=0.340 Sum_probs=50.4
Q ss_pred eEeeCCCcEEEEeEeeccC--CCeEEEEEC--CEEec------c---------CCceEEEcc-----CCeEEEccCCCCC
Q psy10160 139 QVFGVGSDISIPCDVDGYP--IPQVFWYKD--GQVIE------N---------DGVHYRITE-----SNRLHINQANATD 194 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~P--~p~i~W~~~--g~~l~------~---------~~~~~~~~~-----~~sL~I~~v~~~D 194 (558)
..+.+|+.++|.|.+.|.| .|.+.|+|+ +..+. . ...++.+.. ..+|.|.+++.+|
T Consensus 132 ~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D 211 (242)
T 2znx_A 132 SLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTED 211 (242)
T ss_dssp SEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGG
T ss_pred ceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCc
Confidence 4588999999999999986 478999984 22220 0 123555432 1389999999999
Q ss_pred CeEEEEEEEeC
Q psy10160 195 SGEYRCVASNS 205 (558)
Q Consensus 195 ~G~Y~C~a~N~ 205 (558)
+|.|+|.|.|.
T Consensus 212 ~G~Y~C~a~~~ 222 (242)
T 2znx_A 212 TATYYCANXDG 222 (242)
T ss_dssp CEEEEEEETTS
T ss_pred CEEEEEeccCC
Confidence 99999999984
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-13 Score=109.62 Aligned_cols=90 Identities=17% Similarity=0.222 Sum_probs=73.8
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCC-eEEEEECCEEeccCCceEEEccCC---eEEEccCCCCCCeEEEEEEE
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~ 203 (558)
.|+.+...+.+..+.+|+.+.|.|.+.+.|.| .+.|+|+|..+..++ ++.+..++ +|.|.+++.+|+|.|+|.|.
T Consensus 7 ~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~-r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 85 (104)
T 2eny_A 7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSS-RFQATRQGRKYILVVREAAPSDAGEVVFSVR 85 (104)
T ss_dssp CCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCS-SCEEEEETTEEEEEECSCCTTTCSCEEEEET
T ss_pred CCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCC-CEEEEEcCCEEEEEECCCCHHHCEEEEEEEC
Confidence 45667777888999999999999999998854 799999999987654 55554433 79999999999999999984
Q ss_pred eCCceeeEEEEEEEeccCC
Q psy10160 204 NSYTSDENAVTIRVEGIFI 222 (558)
Q Consensus 204 N~~G~~~~~~~l~V~~~~~ 222 (558)
| ...++.|.|.+++.
T Consensus 86 ~----~~~~a~L~V~~~p~ 100 (104)
T 2eny_A 86 G----LTSKASLIVRERSG 100 (104)
T ss_dssp T----EEEEECEEEECCCS
T ss_pred C----eeEEEEEEEeCCCc
Confidence 4 56788899987653
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.8e-13 Score=107.21 Aligned_cols=92 Identities=20% Similarity=0.266 Sum_probs=77.8
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCC---eEEEccCCCCCCeEEEEEEEe
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~N 204 (558)
.||.+...+....+.+|+.+.|.|. .+.|.|.+.|+|++..+..+. ++.+..++ +|.|.+++.+|+|.|+|.
T Consensus 7 ~pp~~~~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~--- 81 (103)
T 2dku_A 7 GANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASG-KHQPSQEGLTLRLTISALEKADSDTYTCD--- 81 (103)
T ss_dssp CCCCCSSCCCCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCCSSS-SEEEEEETTEEEEEEESCCTTTCSEEEEE---
T ss_pred CCCEeEecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECCCCC-eEEEEeCCCEEEEEECCCCcccCEEEEEE---
Confidence 4677777888899999999999999 589999999999999887654 66666555 899999999999999998
Q ss_pred CCceeeEEEEEEEeccCCCCC
Q psy10160 205 SYTSDENAVTIRVEGIFIHPS 225 (558)
Q Consensus 205 ~~G~~~~~~~l~V~~~~~~p~ 225 (558)
.|.....+.|.|.+.+.+|.
T Consensus 82 -~g~~~~~~~l~V~~~p~~p~ 101 (103)
T 2dku_A 82 -IGQAQSRAQLLVQGRRSGPS 101 (103)
T ss_dssp -CSSCBCCEEEEEECSCCCCS
T ss_pred -eCCceEEEEEEEeCccCCCC
Confidence 67777888999987775554
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.5e-13 Score=107.80 Aligned_cols=92 Identities=13% Similarity=0.215 Sum_probs=72.4
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCE-Eecc------CCceEEEc----cCCeEEEccCCCCCCe
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ-VIEN------DGVHYRIT----ESNRLHINQANATDSG 196 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~-~l~~------~~~~~~~~----~~~sL~I~~v~~~D~G 196 (558)
.+|.+...+....+.+|+.+.|.|.+.+.|.|.+.|++++. .+.. .+.++.+. .+.+|.|.+++.+|+|
T Consensus 5 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G 84 (108)
T 3m45_A 5 GSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEG 84 (108)
T ss_dssp ---CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCE
T ss_pred cCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCe
Confidence 34556667788899999999999999999999999999875 2221 12255443 3458999999999999
Q ss_pred EEEEEEEeCCceeeEEEEEEEecc
Q psy10160 197 EYRCVASNSYTSDENAVTIRVEGI 220 (558)
Q Consensus 197 ~Y~C~a~N~~G~~~~~~~l~V~~~ 220 (558)
.|+|.+.| .|..+..+.|.|.++
T Consensus 85 ~Y~C~~~n-~~~~~~~~~L~V~~~ 107 (108)
T 3m45_A 85 QYTCSLFT-MPVKTSKAYLTVLGV 107 (108)
T ss_dssp EEEEEECS-SSCEEEEEEEEEECC
T ss_pred EEEEEEEc-CCCcEEEEEEEEEcC
Confidence 99999999 888889999999654
|
| >3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-12 Score=122.92 Aligned_cols=89 Identities=17% Similarity=0.304 Sum_probs=62.1
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECC--EE---ec---c--------CCceEEEcc----CCeEEEc
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG--QV---IE---N--------DGVHYRITE----SNRLHIN 188 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g--~~---l~---~--------~~~~~~~~~----~~sL~I~ 188 (558)
++.+...+....+.+|+.++|.|.+.+. .|.+.|+|.. .. +. . ...++.+.. ..+|.|.
T Consensus 137 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~ 215 (256)
T 3tf7_C 137 EAAVTQSPRNKVTVTGENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLE 215 (256)
T ss_dssp -CCEEESCSEEEEETTCCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEES
T ss_pred ccEEEecCCEEEEeCCCcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEEC
Confidence 4556666777788899999999999987 7899999832 11 10 0 012333222 2379999
Q ss_pred cCCCCCCeEEEEEEEeCCceee--EEEEEEEe
Q psy10160 189 QANATDSGEYRCVASNSYTSDE--NAVTIRVE 218 (558)
Q Consensus 189 ~v~~~D~G~Y~C~a~N~~G~~~--~~~~l~V~ 218 (558)
+++.+|+|.|+|.|.|..|... .-..|.|.
T Consensus 216 ~v~~~DsG~Y~C~a~n~~g~~~fG~gt~l~v~ 247 (256)
T 3tf7_C 216 SASPSQTSLYFCASSDAPGQLYFGEGSKLTVL 247 (256)
T ss_dssp SCCGGGCEEEEEEEEEETTEEEECCCEEEEEE
T ss_pred CCCHHHCEEEEEEecCCCCccEECCCeEEEEE
Confidence 9999999999999999877552 33455554
|
| >1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-12 Score=121.16 Aligned_cols=76 Identities=14% Similarity=0.299 Sum_probs=54.3
Q ss_pred eeCC-CcEEEEeEeecc-CCC-eEEEEE-CCEEecc--------CCceEEEccCCeEEEccCCC--CCCeEEEEEEEeCC
Q psy10160 141 FGVG-SDISIPCDVDGY-PIP-QVFWYK-DGQVIEN--------DGVHYRITESNRLHINQANA--TDSGEYRCVASNSY 206 (558)
Q Consensus 141 v~~G-~~v~L~C~~~g~-P~p-~i~W~~-~g~~l~~--------~~~~~~~~~~~sL~I~~v~~--~D~G~Y~C~a~N~~ 206 (558)
+..| +.+.|.|.+.|. |.| .+.|++ +|..+.. .+..|.. .++|.|.+... +|.|.|+|.|.|..
T Consensus 137 ~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~~~d~g~ytC~v~n~~ 214 (232)
T 1dn0_B 137 SPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAA--TSQVLLPSKDVMAGTDEHVVCKVQHPN 214 (232)
T ss_dssp ----CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEE--EEEEEECTTCC---CCCEEEEEEECTT
T ss_pred cCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCccccCCcEEE--EEEEEEcHHHhcccCCCeEEEEEEeCC
Confidence 4478 999999999986 887 899999 8877643 0112322 24689988887 89999999999999
Q ss_pred ceeeEEEEEEEe
Q psy10160 207 TSDENAVTIRVE 218 (558)
Q Consensus 207 G~~~~~~~l~V~ 218 (558)
+.......+.|.
T Consensus 215 ~~~~~~~~i~~~ 226 (232)
T 1dn0_B 215 GNKEKNVPLPVI 226 (232)
T ss_dssp CCEEEEEECCC-
T ss_pred CCcceeEecCCC
Confidence 987766666554
|
| >1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.7e-13 Score=124.96 Aligned_cols=67 Identities=18% Similarity=0.351 Sum_probs=49.7
Q ss_pred eeCCCcEEEEeEeecc-CCC-eEEEEECCEEecc--------CCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceee
Q psy10160 141 FGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIEN--------DGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDE 210 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~--------~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~ 210 (558)
+.+|+.+.|.|.+.|. |.| .+.|++++..+.. .+..|.. .+.|.|.++..+| |.|+|.|.|..+...
T Consensus 140 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 216 (225)
T 1op3_H 140 STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL--SSVVTVPSSSLGT-QTYICNVNHKPSNTK 216 (225)
T ss_dssp CCCCCEEEEEEEEEEEBSSCCEEECCTTSCCTTCEECCCEECTTSCEEE--EEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred ccCCCcEEEEEEEEeEECCCeEEEEecCCCcCCeEecCceeCCCCCEEE--EEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence 4679999999999987 777 8999999865321 1112211 1358999999889 999999999766543
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.39 E-value=7.2e-13 Score=110.03 Aligned_cols=93 Identities=19% Similarity=0.296 Sum_probs=70.5
Q ss_pred eeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCc-eEEEc-----cCCeEEEccCCCCCCeEEE
Q psy10160 126 YLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV-HYRIT-----ESNRLHINQANATDSGEYR 199 (558)
Q Consensus 126 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~-~~~~~-----~~~sL~I~~v~~~D~G~Y~ 199 (558)
+..||.+...... . ..+...|.|.+.|+|.|.+.|+|+|..+..+.. ++... .+++|.|.+++.+|+|.|+
T Consensus 5 V~~pP~i~~~~~~-~--~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 81 (118)
T 1wwc_A 5 VYYPPRVVSLEEP-E--LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT 81 (118)
T ss_dssp CCCCCCCCCCCCC-C--CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred EecCCceeccCCC-e--eccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEE
Confidence 3356655433222 1 236678999999999999999999999876542 22211 2458999999999999999
Q ss_pred EEEEeCCceeeEEEEEEEeccC
Q psy10160 200 CVASNSYTSDENAVTIRVEGIF 221 (558)
Q Consensus 200 C~a~N~~G~~~~~~~l~V~~~~ 221 (558)
|.|.|..|....++.|.|...|
T Consensus 82 C~a~N~~G~~~~~~~l~v~~~P 103 (118)
T 1wwc_A 82 LIAKNPLGTANQTINGHFLKEP 103 (118)
T ss_dssp EEEEETTEEEEEEEEECCSCCC
T ss_pred EEEECCCCeEeeEEEEEEccCC
Confidence 9999999999999999886543
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G | Back alignment and structure |
|---|
Probab=99.39 E-value=7.6e-13 Score=121.43 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=95.3
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEec-----------cCCceEEEccCCeEEEccCCCCCCeE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIE-----------NDGVHYRITESNRLHINQANATDSGE 197 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~-----------~~~~~~~~~~~~sL~I~~v~~~D~G~ 197 (558)
++.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+. ....++... +++|.|.+++.+|+|.
T Consensus 4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~L~i~~~~~~d~G~ 82 (209)
T 1nbq_A 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL-PTGITFKSVTREDTGT 82 (209)
T ss_dssp CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE-TTEEECSCCCTTSCSE
T ss_pred eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEee-ccEEEEeeCCHHHCcE
Confidence 4566677788889999999999999999999999999875521 112234433 3789999999999999
Q ss_pred EEEEEEeCCc--eeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccC-CCCCCCcccccchhh
Q psy10160 198 YRCVASNSYT--SDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTR-AGQLPSYGPHIKRAV 274 (558)
Q Consensus 198 Y~C~a~N~~G--~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~-~g~~~~~~~w~~~~l 274 (558)
|+|.+.|..| ..+..+.|.|..++..+.... .. .+ .. +......|.+ .+.|+|.+.|++++.
T Consensus 83 Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~-----~~-~~------~~---g~~~~l~C~~~~~~p~~~v~W~~~~~ 147 (209)
T 1nbq_A 83 YTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNI-----PS-SA------TI---GNRAVLTCSEQDGSPPSEYTWFKDGI 147 (209)
T ss_dssp EEEEEEETTSSCEECCEEECCEEBCCCCCCCCC-----BS-EE------ET---TSCEEECCCCCSCBSCCEEEEEETTC
T ss_pred EEEEEecCCCCccceEEEEEEEecCCcCCCccc-----cc-ce------ec---CCEEEEEEeCCCCCCCceeEEEECCe
Confidence 9999999966 345677788865543333221 11 11 22 3334467775 789999999999976
Q ss_pred hhh
Q psy10160 275 EAE 277 (558)
Q Consensus 275 ~~~ 277 (558)
...
T Consensus 148 ~~~ 150 (209)
T 1nbq_A 148 VMP 150 (209)
T ss_dssp CCC
T ss_pred eCC
Confidence 544
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=106.89 Aligned_cols=87 Identities=20% Similarity=0.450 Sum_probs=73.9
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCC---eEEEccCCCCCCeEEEEEEEe
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~N 204 (558)
.||.+...+....+.+|+.+.|.|.+.+. |.+.|+|++..+..+. ++.+..++ +|.|.+++.+|+|.|+|.|
T Consensus 18 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-- 92 (113)
T 2edh_A 18 LPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGD-RHSLRQDGARCELQIRGLVAEDAGEYLCMC-- 92 (113)
T ss_dssp SCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSS-SEEEEEETTEEEEEECSCCSTTCEEEEEEE--
T ss_pred CCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCC-cEEEEECCCEEEEEECCCChhhCEEEEEEe--
Confidence 46678788888899999999999999875 7899999999887654 66666555 7999999999999999999
Q ss_pred CCceeeEEEEEEEeccC
Q psy10160 205 SYTSDENAVTIRVEGIF 221 (558)
Q Consensus 205 ~~G~~~~~~~l~V~~~~ 221 (558)
|.....+.|.|.+++
T Consensus 93 --~~~~~~~~l~V~~~p 107 (113)
T 2edh_A 93 --GKERTSAMLTVRAMP 107 (113)
T ss_dssp --TTEEEEEEEEECCCC
T ss_pred --CCCCEEEEEEEeCCC
Confidence 777888999997654
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-12 Score=119.20 Aligned_cols=135 Identities=19% Similarity=0.342 Sum_probs=96.9
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccC---CceEEEccCCeE----EEccCCCCCCeEEEE
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEND---GVHYRITESNRL----HINQANATDSGEYRC 200 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~---~~~~~~~~~~sL----~I~~v~~~D~G~Y~C 200 (558)
.||.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+... ..++.. .++.+ .|.+++.+|+|.|+|
T Consensus 8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~-~~~~~~~~l~i~~v~~~d~G~Y~C 86 (217)
T 2vr9_A 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQF-KDGALFFYRTMQGKKEQDGGEYWC 86 (217)
T ss_dssp CCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEEC-TTSCEEESSCCBSSSCBCCEEEEE
T ss_pred CCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEe-cCCceEEEEEeccCCcccCceEEE
Confidence 5788888888999999999999999999999999999999988754 223332 33433 688899999999999
Q ss_pred EEEeCCcee-eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccC-CCCCCCcccccchhhhhh
Q psy10160 201 VASNSYTSD-ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTR-AGQLPSYGPHIKRAVEAE 277 (558)
Q Consensus 201 ~a~N~~G~~-~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~-~g~~~~~~~w~~~~l~~~ 277 (558)
.+.|..|.. +..+.|.|...+ |.+...+ ....+ .. +......|.+ .|.|++.+.|++++....
T Consensus 87 ~~~n~~g~~~~~~~~l~v~~~~--~~~~~~~---~~~~~------~~---g~~v~l~C~~~~g~p~~~v~W~~~g~~~~ 151 (217)
T 2vr9_A 87 VAKNRVGQAVSRHASLQIAVLR--DDFRVEP---KDTRV------AK---GETALLECGPPKGIPEPTLIWIKDGVPLD 151 (217)
T ss_dssp EEEETTEEEECCCEEEEECEEC--CSCSBCC---CCEEE------CT---TSCEEECCBCCCEESCCEEEEEETTEEEC
T ss_pred EEecCCCccccccceEEEEEeC--CCcEECC---CccEE------cC---CCeEEEEEECCCCCCCCeEEEEECCcCCC
Confidence 999999876 345666665322 2222111 11111 12 3334467776 689999999999876544
|
| >1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=123.73 Aligned_cols=68 Identities=19% Similarity=0.384 Sum_probs=50.7
Q ss_pred ceEeeCCCcEEEEeEeeccC--CCeEEEEECC--EEe------cc----------CCceEEEcc-----CCeEEEccCCC
Q psy10160 138 TQVFGVGSDISIPCDVDGYP--IPQVFWYKDG--QVI------EN----------DGVHYRITE-----SNRLHINQANA 192 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~g--~~l------~~----------~~~~~~~~~-----~~sL~I~~v~~ 192 (558)
...+.+|+.++|.|.+.+.| .|.+.|+|++ ..+ .. ...++.+.. ..+|.|.+++.
T Consensus 136 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 215 (247)
T 1svz_A 136 PELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKN 215 (247)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred ceeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCCh
Confidence 34588999999999999985 5689999963 211 00 023554432 23899999999
Q ss_pred CCCeEEEEEEEeC
Q psy10160 193 TDSGEYRCVASNS 205 (558)
Q Consensus 193 ~D~G~Y~C~a~N~ 205 (558)
+|+|.|.|.|.|.
T Consensus 216 ~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 216 EDTATYFCVRDRH 228 (247)
T ss_dssp GGCEEEEEEEEEG
T ss_pred hHCEEEEEEEecc
Confidence 9999999999995
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.2e-13 Score=130.33 Aligned_cols=129 Identities=10% Similarity=0.125 Sum_probs=83.2
Q ss_pred ecCCceEeeCCCcEEEEeEe-eccCCCeEEEEECCEEeccCCceEE---EccCCeEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 134 ITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYR---ITESNRLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~---~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
..+.......|+.+.|.|.+ .|.|.|.+.|++++..+......+. ....+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 119 ~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~ 198 (308)
T 4fom_A 119 KGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEK 198 (308)
T ss_dssp ECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSS
T ss_pred cccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCC
Confidence 34455556678999999975 7899999999999987754211000 0012369999999999999999999988766
Q ss_pred e--EEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCC-cccccchhhhh
Q psy10160 210 E--NAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPS-YGPHIKRAVEA 276 (558)
Q Consensus 210 ~--~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~-~~~w~~~~l~~ 276 (558)
. .++.|.|..+| .+...+ ........ +......|.+.|.|+| .+.|++++...
T Consensus 199 ~~~~~~~l~V~~~P---~~~~~~--~~~~~~~~---------g~~v~l~C~~~g~P~p~~v~W~k~~~~~ 254 (308)
T 4fom_A 199 DIRYSFILDIQYAP---EVSVTG--YDGNWFVG---------RKGVNLKCNADANPPPFKSVWSRLDGQW 254 (308)
T ss_dssp CEEEEEECCCCEEE---EECCBC--CCSCEETT---------CCSCEEECCEEEESCEEEEECCBSSSCC
T ss_pred ceEEeEEEEEecCC---eeEEcc--cceeeeec---------cccEEEEEEEecCCCCcEEEEEECCeEC
Confidence 4 45556664433 221111 11111111 2223356777789988 58999987544
|
| >3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=9.8e-13 Score=123.05 Aligned_cols=72 Identities=18% Similarity=0.304 Sum_probs=51.3
Q ss_pred EeeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCC-------ceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceee
Q psy10160 140 VFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDG-------VHYRITESNRLHINQANATDSGEYRCVASNSYTSDE 210 (558)
Q Consensus 140 ~v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~-------~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~ 210 (558)
.+.+|+.+.|.|.+.|. |.| .+.|++++..+.... ..|. ..+.|.|.++..+| |.|+|.|.|..|...
T Consensus 141 ~~~~g~~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~ 217 (228)
T 3bae_H 141 GDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYT--LSSSVTVTSSTWPS-ESITCNVAHPASSTK 217 (228)
T ss_dssp ---CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEEEEEEETTEEE--EEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred cccCCCCEEEEEEEccEeCCCEEEEEeeCCcccCceEcCceeCCCcEE--EEEEEEEEhhhcCC-CcEEEEEEECCCCCC
Confidence 35689999999999986 888 899999886532110 1121 12468999988866 999999999988765
Q ss_pred EEEE
Q psy10160 211 NAVT 214 (558)
Q Consensus 211 ~~~~ 214 (558)
....
T Consensus 218 ~~~~ 221 (228)
T 3bae_H 218 VDKK 221 (228)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4433
|
| >3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.2e-12 Score=120.91 Aligned_cols=69 Identities=17% Similarity=0.443 Sum_probs=51.5
Q ss_pred ceEeeCCCcEEEEeEeeccC--CCeEEEEEC--CEEe------ccC----------CceEEEccC-----CeEEEccCCC
Q psy10160 138 TQVFGVGSDISIPCDVDGYP--IPQVFWYKD--GQVI------END----------GVHYRITES-----NRLHINQANA 192 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~--g~~l------~~~----------~~~~~~~~~-----~sL~I~~v~~ 192 (558)
...+.+|+.++|.|.+.+.| .|.+.|+|+ +..+ ... ..++.+..+ .+|.|.+++.
T Consensus 143 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 222 (256)
T 3ux9_B 143 GGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRA 222 (256)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CeEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCCh
Confidence 44588999999999999977 788999986 3221 000 124544332 2599999999
Q ss_pred CCCeEEEEEEEeCC
Q psy10160 193 TDSGEYRCVASNSY 206 (558)
Q Consensus 193 ~D~G~Y~C~a~N~~ 206 (558)
+|+|.|+|.|.|..
T Consensus 223 ~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 223 EDTAVYYCARYIDF 236 (256)
T ss_dssp GGCEEEEEEEEETT
T ss_pred hhCEEEEEEEEcCC
Confidence 99999999999964
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-13 Score=122.76 Aligned_cols=153 Identities=14% Similarity=0.120 Sum_probs=100.9
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
.+|.+...+.. .+.+|+.++|.|.+.+ |.|.+.|+|++.. ....+++|.|.+++.+|+|.|+|.+.|..|
T Consensus 7 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~--------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 76 (184)
T 2gi7_A 7 PKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS--------RYQDQAVLFIPAMKRSLAGRYRCSYQNGSL 76 (184)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTC--------CEESSSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred CCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcc--------ccCcccEEEECcCChhhCceEEEEEEcCCC
Confidence 46777777765 7899999999999998 8889999999865 123567899999999999999999999887
Q ss_pred ee--eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhhhhhh
Q psy10160 208 SD--ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAADKKR 285 (558)
Q Consensus 208 ~~--~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~~~~~ 285 (558)
.. +..+.|.|.+...+|.+...+ ...+..|....+.|. +.+. ++.+.|++++............
T Consensus 77 ~~~~s~~~~l~V~~~~~~p~i~~~p----------~~~v~~G~~v~l~C~---~~~~-~~~~~w~k~g~~~~~~~~~~~~ 142 (184)
T 2gi7_A 77 WSLPSDQLELVATGVFAKPSLSAQP----------GPAVSSGGDVTLQCQ---TRYG-FDQFALYKEGDPAPYKNPERWY 142 (184)
T ss_dssp EBCCCCCEEEEEESSSCCCEEEEEC----------CCSSCCTTCEEEEEE---CSSC-CCEEEEEECCCCTTSCCCCEEE
T ss_pred ccCCCCCEEEEecCcCCCCEEEeCC----------CceecCCCcEEEEEE---cCCC-CcEEEEEECCCcCcceecCCCc
Confidence 43 456778886544333322111 112233444454554 4344 4689999997554321111222
Q ss_pred cccccchhhhhhhHHHhhc
Q psy10160 286 RSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 286 ~grth~q~a~~~t~g~~~~ 304 (558)
.+..++..+.+...|.|..
T Consensus 143 ~~~L~i~~v~~~D~G~Y~C 161 (184)
T 2gi7_A 143 RASFPIITVTAAHSGTYRC 161 (184)
T ss_dssp EESSSEEEETTCCSEEEEE
T ss_pred eEEEEEccCCccCCeEEEE
Confidence 3445555666666666654
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-12 Score=103.57 Aligned_cols=88 Identities=23% Similarity=0.326 Sum_probs=72.2
Q ss_pred eCcEEEecCCc-eEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCC---eEEEccCCCCCCeEEEEEEE
Q psy10160 128 VPVKVNITLET-QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 128 ~p~~~~~~~~~-~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~ 203 (558)
.+|.+...+.+ ..+.+|+.+.|.|.+. .|.|.+.|+|++..+..+. ++.+..++ +|.|.+++.+|+|.|+|.|
T Consensus 6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a- 82 (100)
T 2yuv_A 6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPST-KYIFEHKGCQRILFINNCQMTDDSEYYVTA- 82 (100)
T ss_dssp SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBT-TEEEEEETTEEEEEEEEECTTTCCEEEEEE-
T ss_pred CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCC-CEEEEecCCEEEEEEcCCCcCcCEEEEEEE-
Confidence 36667666665 6788999999999998 7999999999999887654 55554433 6999999999999999999
Q ss_pred eCCceeeEEEEEEEeccC
Q psy10160 204 NSYTSDENAVTIRVEGIF 221 (558)
Q Consensus 204 N~~G~~~~~~~l~V~~~~ 221 (558)
|....++.|.|.++|
T Consensus 83 ---g~~~~~~~l~V~~~P 97 (100)
T 2yuv_A 83 ---GDEKCSTELFVRSGP 97 (100)
T ss_dssp ---TTEEEEEEEEECCSC
T ss_pred ---CCceEEEEEEEecCC
Confidence 777888999997654
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.6e-13 Score=106.70 Aligned_cols=84 Identities=29% Similarity=0.521 Sum_probs=69.8
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
.++.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+... .+++|.|.+++.+|+|.|+|.|.|..|
T Consensus 9 ~~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~n~~~ 81 (96)
T 2ens_A 9 EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP-------PSPVLILPEIGPQDQGTYSCVATHSSH 81 (96)
T ss_dssp CSCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSC-------CCSEEEEESCCTTTCEEEECEECCSSC
T ss_pred CCCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCC-------CCCEEEECCCCcccCEEEEEEEEeCCC
Confidence 3566777787888999999999999999999999999999877643 346899999999999999999999766
Q ss_pred ee--eEEEEEEEe
Q psy10160 208 SD--ENAVTIRVE 218 (558)
Q Consensus 208 ~~--~~~~~l~V~ 218 (558)
.. +..+.|.|.
T Consensus 82 ~~~~s~~~~v~V~ 94 (96)
T 2ens_A 82 GPQESRAVSISII 94 (96)
T ss_dssp CCEECCCEEEEEC
T ss_pred CcEEEEEEEEEEe
Confidence 54 455666664
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-13 Score=126.90 Aligned_cols=163 Identities=10% Similarity=-0.004 Sum_probs=104.9
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEE-EccCC--eEEEccCCCCCCeEEEEEEEe
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYR-ITESN--RLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~-~~~~~--sL~I~~v~~~D~G~Y~C~a~N 204 (558)
.+|.+...+. ..+.+|+.++|.|.+.+ |.|.+.|+|+|..+........ ...++ +|.|.+++.+|+|.|+|.+.|
T Consensus 8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 85 (218)
T 1uct_A 8 PMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI 85 (218)
T ss_dssp CCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred CCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEc
Confidence 4566766666 47899999999999988 7889999999876543221111 12345 899999999999999999999
Q ss_pred CCcee--eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhhh
Q psy10160 205 SYTSD--ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAAD 282 (558)
Q Consensus 205 ~~G~~--~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~~ 282 (558)
..|.. +..+.|.|.+....|.+...+ . ..+..|....+.|. ..+.+++.+.|++++.........
T Consensus 86 ~~~~~~~s~~~~l~V~~~~~~P~i~~~p---~-------~~v~~G~~v~L~C~---~~~~~~~~~~W~k~g~~~~~~~~~ 152 (218)
T 1uct_A 86 GHYRFRYSDTLELVVTGLYGKPFLSADR---G-------LVLMPGENISLTCS---SAHIPFDRFSLAKEGELSLPQHQS 152 (218)
T ss_dssp TTTEEEECCCEEEEEECSSCCCEEEESS---C-------SEECTTCCCEEEEE---CSSSCCSEEEEEETTCSSCCSEEE
T ss_pred CCCceeecCCEEEEEcCcccCCEEEeCC---C-------CccCCCCCEEEEEe---CCCCCCCEEEEEECCCcccccccC
Confidence 87643 355778887644333332111 1 12233444555553 236778889999997544321111
Q ss_pred hhhcccccchhhhhhhHHHhhcc
Q psy10160 283 KKRRSRRSLSVVNKWSLRQAFTT 305 (558)
Q Consensus 283 ~~~~grth~q~a~~~t~g~~~~~ 305 (558)
....+..++..+++...|.|.+.
T Consensus 153 ~~~~~~L~I~~v~~~D~G~Y~C~ 175 (218)
T 1uct_A 153 GEHPANFSLGPVDLNVSGIYRCY 175 (218)
T ss_dssp CSSSEEEECCSCCGGGCEEEEEE
T ss_pred CCccCEEEEccCCcccCEEEEEE
Confidence 12234556777777777877664
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.7e-13 Score=120.60 Aligned_cols=162 Identities=13% Similarity=0.102 Sum_probs=100.4
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceE-EEccCCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHY-RITESNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
.+|.+...+.. .+.+|+.++|.|.+.+.|. .+.|+|++..+....... ....+++|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (196)
T 2d3v_A 4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPA 81 (196)
T ss_dssp CBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCC
Confidence 35667766664 7889999999999999876 999999998764321100 11234589999999999999999999998
Q ss_pred cee--eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhhh--
Q psy10160 207 TSD--ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAAD-- 282 (558)
Q Consensus 207 G~~--~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~~-- 282 (558)
|.. +..+.|.|.+.+.+|.+...+ . . .+..|.... ..|.+.+.| +.+.|++++.........
T Consensus 82 g~~~~s~~~~l~V~~~~~~p~i~~~~---~-~------~v~~G~~v~---L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~ 147 (196)
T 2d3v_A 82 GWSEPSDPLELVVTGFYNKPTLSALP---S-P------VVTSGENVT---LQCGSRLRF-DRFILTEEGDHKLSWTLDSQ 147 (196)
T ss_dssp EECBCCCCEEEEEECSSCCCEEEC---------------------CE---EEEEESSCC-SEEEEEEC---CCEEEEECE
T ss_pred CcCCcCccEEEEecCCCCCCeEEccC---C-c------cccCCCcEE---EEEEcCCCC-CEEEEEccCCcccccccccc
Confidence 754 456788887644333332111 1 1 122233334 455565777 889999998665322111
Q ss_pred h----hhcccccchhhhhhhHHHhhcc
Q psy10160 283 K----KRRSRRSLSVVNKWSLRQAFTT 305 (558)
Q Consensus 283 ~----~~~grth~q~a~~~t~g~~~~~ 305 (558)
. ...+..++..+++...|.|...
T Consensus 148 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 174 (196)
T 2d3v_A 148 LTPSGQFQALFPVGPVTPSHRWMLRCY 174 (196)
T ss_dssp ECTTSCEEEEEECCCCBTTBCEEEEEE
T ss_pred cccCCCceeEEEeeecCcccCeeEEEE
Confidence 1 1124556667777777766653
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-13 Score=109.38 Aligned_cols=88 Identities=24% Similarity=0.415 Sum_probs=71.0
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCc---eEEEccCC---eEEEccCCCCCCeEEEEE
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV---HYRITESN---RLHINQANATDSGEYRCV 201 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~---~~~~~~~~---sL~I~~v~~~D~G~Y~C~ 201 (558)
.||.+...+.+..+.+|+.+.|.|.+.+.| |.+.|+|+|..+..+.. +|.+..++ +|.|.+++.+|+|.|+|.
T Consensus 7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 85 (101)
T 2edk_A 7 GPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVI 85 (101)
T ss_dssp CCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEE
T ss_pred CCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEE
Confidence 467777788889999999999999999999 99999999998876532 44444443 699999999999999999
Q ss_pred EEeCCceeeEEEEEEEecc
Q psy10160 202 ASNSYTSDENAVTIRVEGI 220 (558)
Q Consensus 202 a~N~~G~~~~~~~l~V~~~ 220 (558)
|.| ....+.|.|.++
T Consensus 86 a~n----~~~~~~l~V~~~ 100 (101)
T 2edk_A 86 TNG----GQCEAELIVEEK 100 (101)
T ss_dssp CSS----CEECCBEEEECC
T ss_pred EcC----CcEEEEEEEeCC
Confidence 988 344556777543
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-12 Score=105.46 Aligned_cols=86 Identities=23% Similarity=0.405 Sum_probs=68.1
Q ss_pred eCcEEEecCCc-eEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCC---eEEEccCCCCCCeEEEEEEE
Q psy10160 128 VPVKVNITLET-QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 128 ~p~~~~~~~~~-~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~ 203 (558)
.+|.|...+.+ ..+.+|+.+.|.|.+ +.|.|.+.|+|+|..+..+..++.+..++ +|.|.+++.+|+|.|+|.|
T Consensus 14 ~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a- 91 (104)
T 1pd6_A 14 KSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV- 91 (104)
T ss_dssp TTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEE-
T ss_pred CCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEE-
Confidence 35556555555 789999999999999 78999999999999987763466665555 8999999999999999999
Q ss_pred eCCceeeEEEEEEEe
Q psy10160 204 NSYTSDENAVTIRVE 218 (558)
Q Consensus 204 N~~G~~~~~~~l~V~ 218 (558)
|.....+.|.|.
T Consensus 92 ---~~~~~~~~l~V~ 103 (104)
T 1pd6_A 92 ---GGEKCSTELFVK 103 (104)
T ss_dssp ---TTEEECCEEEEE
T ss_pred ---CCCcEEEEEEEe
Confidence 334555666664
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.2e-13 Score=121.70 Aligned_cols=159 Identities=13% Similarity=0.120 Sum_probs=104.4
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEE--ccCCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI--TESNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~--~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
+|.+...+.. .+.+|+.++|.|.+.+ |.|.+.|+|++..+.... .... ..+++|.|.+++.+|+|.|+|.|.|..
T Consensus 5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~-~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (196)
T 3p2t_A 5 KPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDR-QNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPV 81 (196)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEE-ECCCSSSSEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccc-cccccCCceEEEEeccCCcccCceEEEEEeCCC
Confidence 5666667766 8899999999999999 778999999998775421 1111 234589999999999999999999999
Q ss_pred ce--eeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhh---
Q psy10160 207 TS--DENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAA--- 281 (558)
Q Consensus 207 G~--~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~--- 281 (558)
|. .+..+.|.|.+.+.+|.+...+. ..+..|....+.|. +.+ +++.+.|++++........
T Consensus 82 g~~~~s~~~~l~V~~~~~~p~~~~~~~----------~~v~~G~~v~L~C~---~~~-~~~~~~w~k~g~~~~~~~~~~~ 147 (196)
T 3p2t_A 82 GWSQPSDPLELVMTGAYSKPTLSALPS----------PLVTSGKSVTLLCQ---SRS-PMDTFLLCKERAAHPLLCLRSE 147 (196)
T ss_dssp EEBCCCCCEEEEEECSSCCCEEEEESC----------SEECTTCCEEEEEE---EEE-EEEEEEEEETTCCCGGGSEEEE
T ss_pred cccCCCccEEEEecCCCCCCEEEeCCc----------ceecCCCeEEEEEe---cCC-CCCEEEEEeCCCcccceeeccc
Confidence 83 35677888876543333322111 12233444555554 434 4568999998754432221
Q ss_pred --hhhhcccccchhhhhhhHHHhhc
Q psy10160 282 --DKKRRSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 282 --~~~~~grth~q~a~~~t~g~~~~ 304 (558)
.....+..++..++....|.|..
T Consensus 148 ~~~~~~~~~L~i~~v~~~d~G~Y~C 172 (196)
T 3p2t_A 148 HGAQQHQAEFPMSPVTSVHGGTYRC 172 (196)
T ss_dssp EEEEEEEEEEEECSCCGGGCEEEEE
T ss_pred ccccCcceEEEeCCCcccCCCeEEE
Confidence 11123445666677777776665
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-12 Score=119.60 Aligned_cols=155 Identities=13% Similarity=0.109 Sum_probs=102.5
Q ss_pred cCCceEeeCCCcEEEEeEeeccC----CCeEEEEE----------------CCEEecc----CCceEEEcc------CCe
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYP----IPQVFWYK----------------DGQVIEN----DGVHYRITE------SNR 184 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P----~p~i~W~~----------------~g~~l~~----~~~~~~~~~------~~s 184 (558)
++....+.+|+.+.|.|.+.+.| .|.+.|++ ++..+.. ...++.+.. +.+
T Consensus 6 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 85 (214)
T 3jz7_A 6 PEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDAS 85 (214)
T ss_dssp CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCC
T ss_pred CCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCccc
Confidence 34566789999999999999988 56899998 4444431 022444433 468
Q ss_pred EEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccC-CCCC
Q psy10160 185 LHINQANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTR-AGQL 263 (558)
Q Consensus 185 L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~-~g~~ 263 (558)
|.|.+++.+|+|.|+|.+.|..|.....+.|.|..++..+... . ...+..|.... ..|.+ .|.|
T Consensus 86 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~-----------~-~~~~~~g~~v~---l~C~~~~g~p 150 (214)
T 3jz7_A 86 INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCF-----------V-DGSEEIGNDFK---LKCEPKEGSL 150 (214)
T ss_dssp EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEE-----------E-ESCCBTTCCEE---EEEECSBCCS
T ss_pred EEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceee-----------e-ecceecCCcEE---EEecCCCCCC
Confidence 9999999999999999999999999999999997554222111 0 11122333333 45555 5899
Q ss_pred CCcccccchhhhhhhhh--hhhhhcccccchhhhhhhHHHhhc
Q psy10160 264 PSYGPHIKRAVEAEAAA--ADKKRRSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 264 ~~~~~w~~~~l~~~~~~--~~~~~~grth~q~a~~~t~g~~~~ 304 (558)
+|.+.|+++........ ......+..++..+.+...|.|..
T Consensus 151 ~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 193 (214)
T 3jz7_A 151 PLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSC 193 (214)
T ss_dssp SCEEEEEECSTTCCCCGGGGGGTTSSEEEECSCCGGGCEEEEE
T ss_pred CCEEEEEECCCCCccCccceeccCCCEEEEecCCHHHCEEEEE
Confidence 99999999543222221 222334456666666766666654
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.1e-12 Score=117.52 Aligned_cols=97 Identities=22% Similarity=0.414 Sum_probs=81.2
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCC-ceEEEcc---CCeEEEccCCCCCCeEEEEEEE
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG-VHYRITE---SNRLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~-~~~~~~~---~~sL~I~~v~~~D~G~Y~C~a~ 203 (558)
.||.+ ..+....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+.... .++.+.. .++|.|.+++.+|+|.|+|.|.
T Consensus 18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 96 (215)
T 3mtr_A 18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAV 96 (215)
T ss_dssp EEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred cCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEE
Confidence 56777 46666888999999999999999999999999999987653 3444432 4589999999999999999999
Q ss_pred eCCceeeEEEEEEEeccCCCCC
Q psy10160 204 NSYTSDENAVTIRVEGIFIHPS 225 (558)
Q Consensus 204 N~~G~~~~~~~l~V~~~~~~p~ 225 (558)
|..|.....+.|.|..++.+|.
T Consensus 97 n~~g~~~~~~~l~v~~~P~~p~ 118 (215)
T 3mtr_A 97 NRIGQESLEFILVQADTPSSPS 118 (215)
T ss_dssp CSSCEEEEEEEEEECCCCCCCE
T ss_pred ECCCceEEEEEEEECCCCCCCc
Confidence 9999999999999977665543
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-12 Score=110.29 Aligned_cols=84 Identities=23% Similarity=0.377 Sum_probs=68.4
Q ss_pred eeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccC---------CceEEEc------cCCeEEEccCC
Q psy10160 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEND---------GVHYRIT------ESNRLHINQAN 191 (558)
Q Consensus 127 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~---------~~~~~~~------~~~sL~I~~v~ 191 (558)
..||.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+... ..++.+. .+++|.|.+++
T Consensus 19 ~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 98 (137)
T 3qr2_A 19 SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLV 98 (137)
T ss_dssp --CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSCC
T ss_pred CCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCCC
Confidence 36899999999999999999999999999999999999987655321 1122222 34589999999
Q ss_pred CCCCeEEEEEEEeCCceee
Q psy10160 192 ATDSGEYRCVASNSYTSDE 210 (558)
Q Consensus 192 ~~D~G~Y~C~a~N~~G~~~ 210 (558)
.+|+|.|+|.|.|..|...
T Consensus 99 ~~D~G~Y~C~a~N~~G~~~ 117 (137)
T 3qr2_A 99 EEDTGTYECRASNDPDRNH 117 (137)
T ss_dssp GGGCEEEEEEEECCTTSSS
T ss_pred cccCEEEEEEEEecCCccc
Confidence 9999999999999999873
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-13 Score=122.24 Aligned_cols=168 Identities=11% Similarity=0.027 Sum_probs=103.1
Q ss_pred CcEEEecCCceEeeCCCcEEEEeE-eeccCC-CeEEEEECCEEec--cCCceEEEccCCeEEEccCCCCCCeEEEEEEEe
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCD-VDGYPI-PQVFWYKDGQVIE--NDGVHYRITESNRLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~-~~g~P~-p~i~W~~~g~~l~--~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N 204 (558)
|+.....+....+.+|+.+.|.|. +.+.|. |.+.|+|++..+. ....++....+++|.|.+++.+|+|.|+|.+.|
T Consensus 8 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~ 87 (201)
T 3s97_C 8 DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSS 87 (201)
T ss_dssp CCCCSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEE
T ss_pred CccCcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEe
Confidence 444445567788999999999999 999999 9999999998774 233344555677899999999999999999999
Q ss_pred CCceeeE---EEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhh
Q psy10160 205 SYTSDEN---AVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAA 281 (558)
Q Consensus 205 ~~G~~~~---~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~ 281 (558)
..+.... .+.+.+...... ....| ..........+..|..... .|.+.|.|+|.+.|++++........
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~--~~~~p---~~~~~~~~~~~~~g~~~~l---~C~~~g~p~p~v~W~~~~~~~~~~~~ 159 (201)
T 3s97_C 88 PSITKSVFSKFIPLIPIPERTT--KPYPA---DIVVQFKDVYALMGQNVTL---ECFALGNPVPDIRWRKVLEPMPSTAE 159 (201)
T ss_dssp GGGTEEEECCCEEEEEECCSSC--CCEEE---EEEEECCCEEEETTCCEEE---EEEEEEESCCEEEEEETTBCCCTTCE
T ss_pred cCCCcchhhcccceeecccccc--CCCCC---ceEecCCceEEecCCcEEE---EEEccCCCCCceEEEeCCCcCCCcee
Confidence 8766543 334444321100 00000 0000111122233334444 45556899999999998764432211
Q ss_pred hhhhcccccchhhhhhhHHHhhc
Q psy10160 282 DKKRRSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 282 ~~~~~grth~q~a~~~t~g~~~~ 304 (558)
.....+..++..+.....|.|..
T Consensus 160 ~~~~~~~L~i~~v~~~d~G~Y~C 182 (201)
T 3s97_C 160 ISTSGAVLKIFNIQLEDEGIYEC 182 (201)
T ss_dssp EETTTTEEEECSCCGGGCEEEEE
T ss_pred ecCCCCEEEEccCChhhCEEEEE
Confidence 11122344455555555554443
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.35 E-value=7.9e-13 Score=130.68 Aligned_cols=144 Identities=10% Similarity=0.096 Sum_probs=88.7
Q ss_pred ceeEEeccCCC-C-CCcEEEEeCCcccCCCCce----e-ecccc---ce---------eeceeEEeeccceeeEEeeec-
Q psy10160 65 TILSSAFPSES-A-SPVVTQTTTTTTEATSPHV----Y-AALTH---CV---------PWSNVCLFGARSGYLKETQNG- 124 (558)
Q Consensus 65 ~~~~~~~~~~~-p-~p~v~W~~~~~~~~~~~~~----~-~g~~~---~~---------~~~~~~~~~~~~~~~~~~~~~- 124 (558)
.+.+.|.+.+. | .+.|+|++++..+...... . .+.+. .+ .-.|.|.+.+..+........
T Consensus 26 ~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~ 105 (323)
T 2wqr_A 26 TIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKC 105 (323)
T ss_dssp EEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEECCC
T ss_pred cEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeeecC
Confidence 67789988875 4 4789999998776543211 0 11110 00 123566666655433322111
Q ss_pred ---eeeeCcEEEecCCceEeeCCCcEEEEeEeecc-CCC---eEEEEECC-EEeccCCceEEE-c------cCCeEEEcc
Q psy10160 125 ---GYLVPVKVNITLETQVFGVGSDISIPCDVDGY-PIP---QVFWYKDG-QVIENDGVHYRI-T------ESNRLHINQ 189 (558)
Q Consensus 125 ---~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P~p---~i~W~~~g-~~l~~~~~~~~~-~------~~~sL~I~~ 189 (558)
....|+.+...+....+.+|+.+.|.|.+.|. |.| .|.|+|++ ..+.... .... . ..++|.|.+
T Consensus 106 ~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~-~~~~~~~~g~~~~~~~L~I~~ 184 (323)
T 2wqr_A 106 ADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHST-RKEEKQRNGTLTVTSTLPVGT 184 (323)
T ss_dssp CCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCC-CEEEECTTSCEEEEEEEECCH
T ss_pred CCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCccccccc-CCCccCCCCCEEEEEEEEECH
Confidence 11123333445555567899999999999986 567 89999975 4332211 1110 1 234799999
Q ss_pred CCCCCCeEEEEEEEeCCcee
Q psy10160 190 ANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N~~G~~ 209 (558)
++.+|+|.|+|.|.|..+..
T Consensus 185 ~~~~D~G~Y~C~a~n~~~~~ 204 (323)
T 2wqr_A 185 RDWIEGETYQCRVTHPHLPR 204 (323)
T ss_dssp HHHHTTCCEEEEEECTTSSS
T ss_pred HHccCCCCEEEEEECCCCCC
Confidence 99999999999999987544
|
| >3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-13 Score=129.11 Aligned_cols=68 Identities=16% Similarity=0.288 Sum_probs=44.3
Q ss_pred eeCCCcEEEEeEeeccC-CC-eEEEEECCEEeccC-CceEEE--ccC------CeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 141 FGVGSDISIPCDVDGYP-IP-QVFWYKDGQVIEND-GVHYRI--TES------NRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~P-~p-~i~W~~~g~~l~~~-~~~~~~--~~~------~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
+.+|+.++|.|.+.|.| .| .+.|+|+|..+... ...... ..+ ..|.|..+..+|+|.|+|.|.|....
T Consensus 146 ~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 146 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 224 (233)
T ss_dssp HHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred hhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 34799999999999964 43 69999999877543 101101 111 25889999999999999999997543
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=127.17 Aligned_cols=219 Identities=14% Similarity=0.095 Sum_probs=126.9
Q ss_pred cccC-ceeEEeccCCCCCCcEEEEeCCcccCC---C-----------CceeeccccceeeceeEEeeccceeeEEeeece
Q psy10160 61 IDYG-TILSSAFPSESASPVVTQTTTTTTEAT---S-----------PHVYAALTHCVPWSNVCLFGARSGYLKETQNGG 125 (558)
Q Consensus 61 v~~~-~~~~~~~~~~~p~p~v~W~~~~~~~~~---~-----------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (558)
+..| .+.+.|...+. +.|++++..... . .....|.|.|.+. +..+.......+.
T Consensus 16 v~~G~~v~L~C~~~~~----v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~-------n~~~~~~~~~~l~ 84 (292)
T 4dkd_C 16 VKPGATVTLRCVGNGS----VEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEP-------GDPLGGSAAIHLY 84 (292)
T ss_dssp ECTTCCEEEEEECSSC----CCBCCCCCSSCEECCBTTEEEEEESSCCGGGCSCEEECCC-------C----CCEEECCE
T ss_pred EcCCCcEEEEEcCCCc----eEEccCCCCceEEeccCceEEEEEcccccccCEEEEEEEc-------cCCCCcceEEEEE
Confidence 4444 56688887764 899865432110 0 0112455555544 3333223333344
Q ss_pred eeeCcE-EEecCCceEeeCCCcEEEEeEeeccCC--CeEEEEEC-CEEeccCCceEEEccCCeEEEccCCCCCCeEEEEE
Q psy10160 126 YLVPVK-VNITLETQVFGVGSDISIPCDVDGYPI--PQVFWYKD-GQVIENDGVHYRITESNRLHINQANATDSGEYRCV 201 (558)
Q Consensus 126 ~~~p~~-~~~~~~~~~v~~G~~v~L~C~~~g~P~--p~i~W~~~-g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 201 (558)
+..|+. +...+....+.+|+.+.|.|.+.+ |. |.+.|+++ +..+.. +.++....++.|.|.+++.+|+|.|+|.
T Consensus 85 V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 162 (292)
T 4dkd_C 85 VKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMR-HTNYSFSPWHGFTIHRAKFIQSQDYQCS 162 (292)
T ss_dssp ECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCS-SCCEECCSSSCCEETTCCGGGCSEEEEE
T ss_pred EcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCcccc-CCcccccCCceEEECCCCHHHCeEEEEE
Confidence 444443 455667788899999999999998 55 78999998 444443 4466666777899999999999999999
Q ss_pred EEeCCcee-eEEEEEEEeccCC-CCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCC-Ccccccchhhhhhh
Q psy10160 202 ASNSYTSD-ENAVTIRVEGIFI-HPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLP-SYGPHIKRAVEAEA 278 (558)
Q Consensus 202 a~N~~G~~-~~~~~l~V~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~-~~~~w~~~~l~~~~ 278 (558)
+.|..|.. +..+.|.|..... +|.+...+. . ..+..|....+ .|.+.+.++ +.+.|.+++.....
T Consensus 163 a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~---~------~~~~~g~~v~l---~C~~~~~~~~~~~~w~~~~~~~~~ 230 (292)
T 4dkd_C 163 ALMGGRKVMSISIRLKVQKVIPGPPALTLVPA---E------LVRIRGEAAQI---VCSASSVDVNFDVFLQHNNTKLAI 230 (292)
T ss_dssp ECSTTSCEECCCEEEEEECCCCSSCEEEEESS---C------BCCCSSSCEEE---EEEEEESSSCCEEECCBSSCCCCC
T ss_pred EEeCCCceeEEEEEEEEeCCCCCCCeEEccCC---c------eeEecCCCEEE---EEEecCCCCceEEEEeCCCccccc
Confidence 99988866 3578888875332 333221111 0 11123333444 444445554 55788887654322
Q ss_pred hhh-h-----hhhcccccchhhhhhhHHHhhc
Q psy10160 279 AAA-D-----KKRRSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 279 ~~~-~-----~~~~grth~q~a~~~t~g~~~~ 304 (558)
... . ....+..++..+.....|.|..
T Consensus 231 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 262 (292)
T 4dkd_C 231 PQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSC 262 (292)
T ss_dssp CBEEEEETTEEEEEEEEEESSCCTTSCEEEEE
T ss_pred CccceeccceeeeEEEEEECccChhcCeEEEE
Confidence 211 1 1111234555555565665554
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-12 Score=102.11 Aligned_cols=84 Identities=17% Similarity=0.287 Sum_probs=69.0
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCC---eEEEccCCCCCCeEEEEEEEeC
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
++.+...+....+.+|+.+.|.|.+ +.|.|.+.|+|++..+..+. ++.+..++ +|.|.+++.+|+|.|+|.|
T Consensus 8 ~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a--- 82 (95)
T 2k1m_A 8 VSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASN-KYGLATEGTRHTLTVREVGPADQGSYAVIA--- 82 (95)
T ss_dssp CCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSST-TCEEEEETTEEEEEESSCCTTCCSEEEEEE---
T ss_pred CCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCC-cEEEEEcCCEEEEEEcCCCcccCEEEEEEE---
Confidence 3556666788889999999999999 88999999999999887654 55544433 6999999999999999999
Q ss_pred CceeeEEEEEEEe
Q psy10160 206 YTSDENAVTIRVE 218 (558)
Q Consensus 206 ~G~~~~~~~l~V~ 218 (558)
|.....+.|.|.
T Consensus 83 -g~~~~~~~l~V~ 94 (95)
T 2k1m_A 83 -GSSKVKFDLKVI 94 (95)
T ss_dssp -TTEEEEEEEEEE
T ss_pred -CCceEEEEEEEe
Confidence 666777888774
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-12 Score=105.82 Aligned_cols=90 Identities=23% Similarity=0.416 Sum_probs=72.2
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccC--CCeEEEEECCEEeccCCc----eEEEc------cCCeEEEccCCCCCC
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYP--IPQVFWYKDGQVIENDGV----HYRIT------ESNRLHINQANATDS 195 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~g~~l~~~~~----~~~~~------~~~sL~I~~v~~~D~ 195 (558)
.+|.+...+....+.+|+.++|.|.+.|.| .|.+.|+|++..+..... ++... .+++|.|.+++.+|+
T Consensus 9 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 88 (112)
T 3so5_A 9 PXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSE 88 (112)
T ss_dssp CSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGC
T ss_pred CCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccC
Confidence 578888888888999999999999999654 578999999998865421 11111 135899999999999
Q ss_pred eEEEEEEEeCCce-eeEEEEEEE
Q psy10160 196 GEYRCVASNSYTS-DENAVTIRV 217 (558)
Q Consensus 196 G~Y~C~a~N~~G~-~~~~~~l~V 217 (558)
|.|+|.|.|..|. .+..+.|.|
T Consensus 89 G~Y~C~a~n~~g~~~s~~~~l~V 111 (112)
T 3so5_A 89 GXYQCVISNHFGSSYSVXAXLTI 111 (112)
T ss_dssp EEEEEEEEETTEEEECCCEEEEE
T ss_pred CeEEEEEEeCCCcEEEeEEEEEe
Confidence 9999999999998 457777776
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=9.7e-12 Score=101.24 Aligned_cols=89 Identities=19% Similarity=0.311 Sum_probs=74.4
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCC--c-------eEEEccCC---eEEEccCCCCCC
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG--V-------HYRITESN---RLHINQANATDS 195 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~--~-------~~~~~~~~---sL~I~~v~~~D~ 195 (558)
.++.+...+.+..+.+|+.+.|.|.+.+ .|.+.|+|||.++..+. . ++.+..++ +|.|.+++.+|+
T Consensus 7 p~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~ 84 (112)
T 2e6q_A 7 GTARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDS 84 (112)
T ss_dssp SCCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTC
T ss_pred CCcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHC
Confidence 4577888899999999999999999998 77899999999998754 2 78877665 799999999999
Q ss_pred eEEEEEEEeCCceeeEEEEEEEeccC
Q psy10160 196 GEYRCVASNSYTSDENAVTIRVEGIF 221 (558)
Q Consensus 196 G~Y~C~a~N~~G~~~~~~~l~V~~~~ 221 (558)
|.|+|...+ ....++.|.|.++|
T Consensus 85 G~Y~~~~~~---~~~ssA~L~V~~~p 107 (112)
T 2e6q_A 85 GALVGFSCP---GVQDSAALTIQESS 107 (112)
T ss_dssp SEEEEEEET---TEEEEEEEEEECSS
T ss_pred ccEEEEEEC---CeeEEEEEEEeCCC
Confidence 999875443 34568899998765
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X | Back alignment and structure |
|---|
Probab=99.35 E-value=3.5e-12 Score=106.50 Aligned_cols=86 Identities=17% Similarity=0.198 Sum_probs=66.5
Q ss_pred CCceEeeCCCcEEEEeEeeccC--CCeEEEEECCEEecc-----C-CceEEE----ccCCeEEEccCCCCCCeEEEEEEE
Q psy10160 136 LETQVFGVGSDISIPCDVDGYP--IPQVFWYKDGQVIEN-----D-GVHYRI----TESNRLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~g~~l~~-----~-~~~~~~----~~~~sL~I~~v~~~D~G~Y~C~a~ 203 (558)
+....+.+|+.+.|.|.+.|.| .+.+.|++++..+.. . ...+.. ...++|.|.+++.+|+|.|+|.|.
T Consensus 15 ~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~ 94 (122)
T 3s35_X 15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS 94 (122)
T ss_dssp CSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEc
Confidence 3445788999999999999954 567999998874321 1 111111 123579999999999999999999
Q ss_pred eCCceeeEEEEEEEeccC
Q psy10160 204 NSYTSDENAVTIRVEGIF 221 (558)
Q Consensus 204 N~~G~~~~~~~l~V~~~~ 221 (558)
|..|.....+.|.|.+++
T Consensus 95 n~~g~~~~~~~l~V~~~p 112 (122)
T 3s35_X 95 SGLMTKKNSTFVRVHEKP 112 (122)
T ss_dssp CSSCEEEEEEEEEEEEEE
T ss_pred cCCCceEEEEEEEEeccC
Confidence 999999999999997654
|
| >3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=123.17 Aligned_cols=77 Identities=16% Similarity=0.287 Sum_probs=56.0
Q ss_pred eEeeCCCcEEEEeEeec-cCCC-eEEEEECCEEecc-------CCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 139 QVFGVGSDISIPCDVDG-YPIP-QVFWYKDGQVIEN-------DGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g-~P~p-~i~W~~~g~~l~~-------~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
..+..|+.+.|.|.+.| .|.| .+.|++++..+.. .+..|... ++|.|.++..+| |.|+|.|.|..+..
T Consensus 134 ~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~--s~L~i~~~~~~d-g~ytC~v~~~~~~~ 210 (253)
T 3liz_H 134 SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLS--SSVTVPSSTWPS-ETVTCNVAHPASST 210 (253)
T ss_dssp -----CCEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEE--EEEEEETTSTTT-SCCEEEEEEGGGTE
T ss_pred cccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecceEeCCccccCCeEEEE--EEEEEcHHHCCC-ceEEEEEEECCCCc
Confidence 34557999999999998 7777 8999998863210 01233322 579999999999 99999999999887
Q ss_pred eEEEEEEEe
Q psy10160 210 ENAVTIRVE 218 (558)
Q Consensus 210 ~~~~~l~V~ 218 (558)
.....+.+.
T Consensus 211 ~~~~~~~~~ 219 (253)
T 3liz_H 211 KVDKKIVPR 219 (253)
T ss_dssp EEEEECCCC
T ss_pred ceEEEecCc
Confidence 777776665
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-13 Score=123.17 Aligned_cols=162 Identities=12% Similarity=0.111 Sum_probs=102.3
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCc-eEEEccCCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV-HYRITESNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~-~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
.+|.+...+.. .+.+|+.++|.|.+.+.|. .+.|+|++..+..... ......+++|.|.+++.+|+|.|+|.+.|..
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (198)
T 1ugn_A 4 PKPTLWAEPGS-VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDT 81 (198)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCeEeccCCC-cccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCC
Confidence 35666666664 7899999999999999876 6999999987642110 1112345689999999999999999999988
Q ss_pred -c--eeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhhh-
Q psy10160 207 -T--SDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAAD- 282 (558)
Q Consensus 207 -G--~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~~- 282 (558)
| ..+..+.|.|.+.+..|.+...+ . ..+..|. .....|.+.+. ++.+.|++++.........
T Consensus 82 ~g~~~~s~~~~l~V~~~~~~p~i~~~~---~-------~~v~~G~---~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~ 147 (198)
T 1ugn_A 82 AGRSESSDPLELVVTGAYIKPTLSAQP---S-------PVVNSGG---NVTLQCDSQVA-FDGFILCKEGEDEHPQCLNS 147 (198)
T ss_dssp TEECCCCCCEEEEEECSSCCCEEEEES---C-------SEEETTC---CEEEEEECSSC-CSEEEEEEC------CEEEC
T ss_pred CCcccCCccEEEEEcccccCCccccCC---c-------cccCCCC---cEEEEEecCCC-CcEEEEEECCCccCCccccc
Confidence 6 33567888887643333322111 1 1223333 33455666677 7899999998765322211
Q ss_pred -hh----hcccccchhhhhhhHHHhhcc
Q psy10160 283 -KK----RRSRRSLSVVNKWSLRQAFTT 305 (558)
Q Consensus 283 -~~----~~grth~q~a~~~t~g~~~~~ 305 (558)
.. ..+..++..+.+...|.|...
T Consensus 148 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 175 (198)
T 1ugn_A 148 QPHARGSSRAIFSVGPVSPSRRWWYRCY 175 (198)
T ss_dssp ------CCEEEEEECCCCTTSCEEEEEE
T ss_pred cccCCCcceeEEEecccCcccCeEEEEE
Confidence 11 125566677777777766653
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-12 Score=118.21 Aligned_cols=118 Identities=15% Similarity=0.116 Sum_probs=84.3
Q ss_pred eEeeCCCcEEEEeEeeccCCC--eEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy10160 139 QVFGVGSDISIPCDVDGYPIP--QVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 216 (558)
..+..|++++|.|.+ |.|.| .|.|++.+..+ ++......++.|.|.+++.+|.|.|.|.|.|..|.....+.|.
T Consensus 17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~lt 92 (210)
T 1gsm_A 17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLL 92 (210)
T ss_dssp EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEEE
Confidence 578999999999999 99988 99999966444 2222233456899999999999999999999999988999999
Q ss_pred EeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCC-CC----Ccccccchhhhhh
Q psy10160 217 VEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQ-LP----SYGPHIKRAVEAE 277 (558)
Q Consensus 217 V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~-~~----~~~~w~~~~l~~~ 277 (558)
|..+| .++.+. ......|... .+|.+.+. |. +.+.|++++..+.
T Consensus 93 V~~~P---~~~~i~----------~~~~~~g~~~----l~C~a~g~~P~~~~~lti~Wlk~~~~L~ 141 (210)
T 1gsm_A 93 VYAFP---NQLTVS----------PAALVPGDPE----VACTAHKVTPVDPNALSFSLLVGGQELE 141 (210)
T ss_dssp EEBCC---SEEEEE----------SSSBCTTCCE----EEEEEEEEBCCCTTTEEEEEEETTEECT
T ss_pred EEecC---CCcEEc----------cceEEeCCce----EEEEeCCCCCCCCCCcEEEEEECCEEcc
Confidence 97654 222111 0011112222 55656564 53 4799999987764
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-12 Score=121.98 Aligned_cols=134 Identities=13% Similarity=0.164 Sum_probs=92.2
Q ss_pred EEecCCceEeeCCCcEEEEeEeec---cCCCeEEEEECCEEe-----------------------------ccCCceEEE
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDG---YPIPQVFWYKDGQVI-----------------------------ENDGVHYRI 179 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g---~P~p~i~W~~~g~~l-----------------------------~~~~~~~~~ 179 (558)
+..++....+.+|+.+.|.|.+.+ .|.|.+.|+|++... .....++.+
T Consensus 5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 84 (250)
T 2fbo_J 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV 84 (250)
T ss_dssp EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence 344556778899999999999998 889999999987442 111123333
Q ss_pred cc--CCeEEEccCCCCCCeEEEEEEEeCCcee-----eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeE
Q psy10160 180 TE--SNRLHINQANATDSGEYRCVASNSYTSD-----ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQF 252 (558)
Q Consensus 180 ~~--~~sL~I~~v~~~D~G~Y~C~a~N~~G~~-----~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 252 (558)
.. +.+|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|..++.+|.... . ....+.+ . .+..
T Consensus 85 ~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~-~--~~~~~~v-----~---~g~~ 153 (250)
T 2fbo_J 85 ANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHV-S--TAEVVQV-----D---EGND 153 (250)
T ss_dssp SCTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEE-C--CCSEEEC-----C---TTCC
T ss_pred ccCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEE-e--cCceEEe-----c---CCCc
Confidence 32 3589999999999999999999987754 5688888876533332221 0 1111111 1 1444
Q ss_pred EEEeccCCCCCCCcccccchhhhh
Q psy10160 253 CCESCTRAGQLPSYGPHIKRAVEA 276 (558)
Q Consensus 253 ~c~~~~~~g~~~~~~~w~~~~l~~ 276 (558)
....|.+.+.|+|.+.|++++...
T Consensus 154 v~L~C~~~g~p~p~v~W~k~~~~~ 177 (250)
T 2fbo_J 154 ITMTCPCTDCANANVTWYTGPTFF 177 (250)
T ss_dssp EEECCCEESCTTCEEEEEEEEECS
T ss_pred EEEEEEecCCCCCeeEEEeCCCcc
Confidence 557788889899999999997544
|
| >2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.1e-12 Score=124.45 Aligned_cols=89 Identities=13% Similarity=0.217 Sum_probs=61.4
Q ss_pred EEEecCCceEeeCCCcEEEEeEeeccCCC------eEEEEECC--EE---ec-c-------CCceEEEcc---CCeEEEc
Q psy10160 131 KVNITLETQVFGVGSDISIPCDVDGYPIP------QVFWYKDG--QV---IE-N-------DGVHYRITE---SNRLHIN 188 (558)
Q Consensus 131 ~~~~~~~~~~v~~G~~v~L~C~~~g~P~p------~i~W~~~g--~~---l~-~-------~~~~~~~~~---~~sL~I~ 188 (558)
.+...+....+.+|+.++|.|.+.+.|.| .+.|+|+. .. +. . ...++.... ..+|.|.
T Consensus 161 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 240 (291)
T 2gki_A 161 VMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTIS 240 (291)
T ss_dssp CEECSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred eEEcCCCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEEC
Confidence 34444556778999999999999998876 89999962 21 11 0 023454332 2379999
Q ss_pred cCCCCCCeEEEEEEEeCCceee-EEEEEEEec
Q psy10160 189 QANATDSGEYRCVASNSYTSDE-NAVTIRVEG 219 (558)
Q Consensus 189 ~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~~ 219 (558)
+++.+|+|.|+|.+.|.....- .-..|.|++
T Consensus 241 ~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~v~~ 272 (291)
T 2gki_A 241 SVQAEDLAVYYCKQSYYHMYTFGSGTKLEIKH 272 (291)
T ss_dssp SCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred CCCHHHCEEEEEEEccCCceEEcCCEEEEEEe
Confidence 9999999999999999654332 234556653
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-12 Score=105.84 Aligned_cols=88 Identities=20% Similarity=0.440 Sum_probs=73.9
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCC---eEEEccCCCCCCeEEEEEEEe
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~N 204 (558)
.||.+...+....+.+|+.+.|.|.+.|.|.| +.|+|++..+..+. ++.+..++ +|.|.+++.+|+|.|+|.
T Consensus 7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~--- 81 (103)
T 2e7b_A 7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGD-KYSLRQEGAMLELVVRNLRPQDSGRYSCS--- 81 (103)
T ss_dssp CCCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSS-SEEEEECSSEEEEEECSCCTTTCCCEEEE---
T ss_pred CCCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCC-cEEEEEcCCEEEEEEccCCcccCEEEEEE---
Confidence 46777777888899999999999999999999 99999998886544 66666655 499999999999999998
Q ss_pred CCceeeEEEEEEEeccC
Q psy10160 205 SYTSDENAVTIRVEGIF 221 (558)
Q Consensus 205 ~~G~~~~~~~l~V~~~~ 221 (558)
.|.....+.|.|.+++
T Consensus 82 -~g~~~~~~~l~V~~~p 97 (103)
T 2e7b_A 82 -FGDQTTSATLTVTALP 97 (103)
T ss_dssp -CSSCBCCBCEEEECCC
T ss_pred -ECCcEEEEEEEEEecc
Confidence 6667777888887554
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-12 Score=108.31 Aligned_cols=87 Identities=14% Similarity=0.273 Sum_probs=69.2
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEec-------cCCceEEEcc----CCeEEEccCCCCCCeEEEEEEE
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIE-------NDGVHYRITE----SNRLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~-------~~~~~~~~~~----~~sL~I~~v~~~D~G~Y~C~a~ 203 (558)
.+....+.+|+.++|.|.+.+.|.|.+.|++.+..+. ..+.++.+.. .++|.|.+++.+|+|.|+|.+.
T Consensus 7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~ 86 (124)
T 3rbg_A 7 HTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHY 86 (124)
T ss_dssp SEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEE
Confidence 4456778999999999999999999999998665322 1233554432 3589999999999999999999
Q ss_pred eCCceeeEEEEEEEeccCC
Q psy10160 204 NSYTSDENAVTIRVEGIFI 222 (558)
Q Consensus 204 N~~G~~~~~~~l~V~~~~~ 222 (558)
|. |.....+.|.|..+|.
T Consensus 87 n~-g~~~~~~~l~V~~~P~ 104 (124)
T 3rbg_A 87 SD-SVSTKEVKVIVLATMK 104 (124)
T ss_dssp SS-SEEEEEEEEEEECC--
T ss_pred cC-CCCcEEEEEEEEeCCC
Confidence 99 9999999999976653
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-11 Score=134.19 Aligned_cols=198 Identities=11% Similarity=0.057 Sum_probs=125.0
Q ss_pred CEEEEEEEEeCCcceEEEEEEEEeCCCCccCCCC---------ccccCceeEEeccCCCCCCcEEEEeCCcccCCCCcee
Q psy10160 26 LGAYTCQAYNGLGRAVSWTVTLQALPSEKVADPN---------AIDYGTILSSAFPSESASPVVTQTTTTTTEATSPHVY 96 (558)
Q Consensus 26 ~G~Y~C~a~n~~g~~~s~~l~V~~~p~~~~~~~~---------~v~~~~~~~~~~~~~~p~p~v~W~~~~~~~~~~~~~~ 96 (558)
+|.|.+.-.+......++.|..-..+........ ....|...+.|.+.+.|.|.+.|.+++..........
T Consensus 45 ~g~y~~~~~s~~~~~~~a~l~sp~~~~~~~~c~~F~y~m~G~~~~~~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~~~~ 124 (731)
T 2v5y_A 45 SGSFMLVNASGRPEGQRAHLLLPQLKENDTHCIDFHYFVSSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAE 124 (731)
T ss_dssp SSEEEEEECTTCCTTCEEEEEEEEECCSSCCEEEEEEEEECSSSSCSEEEEEEEEETTCCCCSEEEEECCCCCSSCEEEE
T ss_pred cccEEEEECcCCCCCCEEEEEeCccCCCCCcEEEEEEEecCCCCCCcceEEEEEecCCCCccceeEEEeCCcCCceeEEE
Confidence 4999887665432223444443222211100000 0123567789999999999999999987654322111
Q ss_pred e--cc--ccceeeceeEEeeccceeeEEeeec----eeeeCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEE-EE--E
Q psy10160 97 A--AL--THCVPWSNVCLFGARSGYLKETQNG----GYLVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVF-WY--K 165 (558)
Q Consensus 97 ~--g~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~-W~--~ 165 (558)
. .. .........|.+.+..+........ ....||.+. .+.+..+.+|+.+.|.|.+.|.|.|.+. |+ +
T Consensus 125 ~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~ 203 (731)
T 2v5y_A 125 LAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGI 203 (731)
T ss_dssp EEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEES
T ss_pred EEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecccccccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecC
Confidence 0 00 1111233445555555544433221 122466665 5667889999999999999999999987 88 6
Q ss_pred CCEEeccCCceEEEcc---CCeEEEccCCCCCCeEEEEEEEeCCce-eeEEEEEEEeccCCCCC
Q psy10160 166 DGQVIENDGVHYRITE---SNRLHINQANATDSGEYRCVASNSYTS-DENAVTIRVEGIFIHPS 225 (558)
Q Consensus 166 ~g~~l~~~~~~~~~~~---~~sL~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~~~~~p~ 225 (558)
+|..+.... ...+.. .++|.|.++..+|+|.|+|.|.|..|. .+..+.|.|..++.+|.
T Consensus 204 ~g~~l~~~~-~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~ 266 (731)
T 2v5y_A 204 DVRDAPLKE-IKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIA 266 (731)
T ss_dssp SSCCEEEEE-EEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSS
T ss_pred CCccccccc-eEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCC
Confidence 777665421 112222 258999999999999999999999998 67778888887665443
|
| >2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C | Back alignment and structure |
|---|
Probab=99.33 E-value=5.4e-12 Score=120.84 Aligned_cols=68 Identities=25% Similarity=0.511 Sum_probs=50.7
Q ss_pred ceEeeCCCcEEEEeEeeccCC--CeEEEEECC--EE---ec---cC----------CceEEEcc-----CCeEEEccCCC
Q psy10160 138 TQVFGVGSDISIPCDVDGYPI--PQVFWYKDG--QV---IE---ND----------GVHYRITE-----SNRLHINQANA 192 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~--p~i~W~~~g--~~---l~---~~----------~~~~~~~~-----~~sL~I~~v~~ 192 (558)
...+.+|+.++|.|.+.+.|. |.+.|+|+. .. +. .. ..++.+.. ..+|.|.+++.
T Consensus 147 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 226 (264)
T 2gjj_A 147 PEVVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTS 226 (264)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CEEEcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCc
Confidence 346889999999999999874 789999863 21 11 00 12443321 24799999999
Q ss_pred CCCeEEEEEEEeC
Q psy10160 193 TDSGEYRCVASNS 205 (558)
Q Consensus 193 ~D~G~Y~C~a~N~ 205 (558)
+|+|.|.|.+.|.
T Consensus 227 ~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 227 EDSADYYCVRSGN 239 (264)
T ss_dssp GGCEEEEEEEECS
T ss_pred ccCEEEEEEEecC
Confidence 9999999999995
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.3e-11 Score=126.96 Aligned_cols=153 Identities=14% Similarity=0.207 Sum_probs=88.1
Q ss_pred cCceeEEeccCCCCCC--cEEEEeCCcccCCCC---cee---eccccc---e---------eeceeEEeeccceeeE---
Q psy10160 63 YGTILSSAFPSESASP--VVTQTTTTTTEATSP---HVY---AALTHC---V---------PWSNVCLFGARSGYLK--- 119 (558)
Q Consensus 63 ~~~~~~~~~~~~~p~p--~v~W~~~~~~~~~~~---~~~---~g~~~~---~---------~~~~~~~~~~~~~~~~--- 119 (558)
+..+.+.|.+.+.+++ .|+|++++..+.... ... .|.|.. + .-.+.|.+.+......
T Consensus 312 g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~~~~ 391 (512)
T 1zvo_C 312 RDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQRLM 391 (512)
T ss_pred CCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCCcee
Confidence 3466789988886443 899999987654110 000 111110 1 1134666665543211
Q ss_pred Eeeecee--eeCcEEEecCCceEeeCCCcEE-EEeEeeccCCC--eEEEEECCEEeccCCc---eEEEccCC-------e
Q psy10160 120 ETQNGGY--LVPVKVNITLETQVFGVGSDIS-IPCDVDGYPIP--QVFWYKDGQVIENDGV---HYRITESN-------R 184 (558)
Q Consensus 120 ~~~~~~~--~~p~~~~~~~~~~~v~~G~~v~-L~C~~~g~P~p--~i~W~~~g~~l~~~~~---~~~~~~~~-------s 184 (558)
....... ..+|.+...+... .|+.+. |.|.+.|.++| .+.|+|+|..+..... ......++ .
T Consensus 392 ~~~~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~ 468 (512)
T 1zvo_C 392 ALREPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSV 468 (512)
T ss_pred EEeecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEE
Confidence 1000001 2355554443332 789999 99999996554 5899999998865321 11122333 3
Q ss_pred EEEccCCCCCCeEEEEEEEeCCceee--EEEEEEEe
Q psy10160 185 LHINQANATDSGEYRCVASNSYTSDE--NAVTIRVE 218 (558)
Q Consensus 185 L~I~~v~~~D~G~Y~C~a~N~~G~~~--~~~~l~V~ 218 (558)
|.|.....+|.|.|+|.|.|...... ....+.|.
T Consensus 469 L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v~ 504 (512)
T 1zvo_C 469 LRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEVS 504 (512)
T ss_pred EEECchhcCCCCeEEEEEEecCCCCceEEEEEEEec
Confidence 66777777789999999999876543 44455553
|
| >3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B | Back alignment and structure |
|---|
Probab=99.33 E-value=9.5e-12 Score=115.60 Aligned_cols=67 Identities=21% Similarity=0.471 Sum_probs=51.9
Q ss_pred eCCCcEEEEeEeec-cCC-C-eEEEEECCEEecc---------CCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 142 GVGSDISIPCDVDG-YPI-P-QVFWYKDGQVIEN---------DGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 142 ~~G~~v~L~C~~~g-~P~-p-~i~W~~~g~~l~~---------~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
.+|+.++|.|.+.| .|. | .+.|+++|..+.. .+..|.+. +.|.|.++..+|+|.|+|.|.|..+..
T Consensus 136 ~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~d~g~ytC~v~~~~~~~ 213 (221)
T 3m8o_H 136 QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTS--SQLTLPATQCLAGKSVTCHVKHYTNPS 213 (221)
T ss_dssp CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEEE--EEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred ccCCCEEEEEEEEeeECCCCEEEEEEECCEECceEEcCceeeCCCCcEEEE--EEEEECHHHcCCCCeEEEEEEECCCCc
Confidence 68999999999998 776 4 8999999876621 12233322 369999999999999999999987654
Q ss_pred e
Q psy10160 210 E 210 (558)
Q Consensus 210 ~ 210 (558)
.
T Consensus 214 ~ 214 (221)
T 3m8o_H 214 Q 214 (221)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-12 Score=125.12 Aligned_cols=88 Identities=16% Similarity=0.237 Sum_probs=58.5
Q ss_pred EEecCCceEeeCCCcEEEEeEeec-cC-CCeEEEEEC--CEEecc-----------CCceEEEccC---CeEEEccCCCC
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDG-YP-IPQVFWYKD--GQVIEN-----------DGVHYRITES---NRLHINQANAT 193 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g-~P-~p~i~W~~~--g~~l~~-----------~~~~~~~~~~---~sL~I~~v~~~ 193 (558)
+...+. ..+.+|++++|.|.+.+ .| .+.+.|+|. +..+.. ...++....+ .+|.|.+++.+
T Consensus 143 v~~~p~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 221 (280)
T 3fku_X 143 LTQPPS-VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPE 221 (280)
T ss_dssp BBCCSE-EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGG
T ss_pred EEeCCc-EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHH
Confidence 333444 67889999999999998 44 478999983 222110 0124444332 25999999999
Q ss_pred CCeEEEEEEEeCCce---eeEEEEEEEecc
Q psy10160 194 DSGEYRCVASNSYTS---DENAVTIRVEGI 220 (558)
Q Consensus 194 D~G~Y~C~a~N~~G~---~~~~~~l~V~~~ 220 (558)
|+|.|.|.+.|..+. ......|.|...
T Consensus 222 DsG~Y~C~~~~~~~~~~~~g~~t~l~V~~~ 251 (280)
T 3fku_X 222 DEADYYCSTWDSSLSAVVFGGGTKLTVLGQ 251 (280)
T ss_dssp GCSEEEEEEEETTTTEEEEBCCCEEEEC--
T ss_pred HCEEEEEEEecCCCCceEECCCEEEEECCC
Confidence 999999999998732 123456777543
|
| >1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=5e-12 Score=121.34 Aligned_cols=69 Identities=19% Similarity=0.419 Sum_probs=51.8
Q ss_pred CceEeeCCCcEEEEeEeeccCC--CeEEEEEC--CEEec------------------cCCceEEEcc-----CCeEEEcc
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPI--PQVFWYKD--GQVIE------------------NDGVHYRITE-----SNRLHINQ 189 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~--p~i~W~~~--g~~l~------------------~~~~~~~~~~-----~~sL~I~~ 189 (558)
....+.+|+.++|.|.+.|.|. |.+.|+|+ +..+. ....++.+.. ..+|.|.+
T Consensus 159 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 238 (268)
T 1x9q_A 159 GGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNN 238 (268)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred CceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECC
Confidence 4567889999999999998864 78999985 22210 1123555432 24799999
Q ss_pred CCCCCCeEEEEEEEeC
Q psy10160 190 ANATDSGEYRCVASNS 205 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N~ 205 (558)
++.+|+|.|+|.+.|.
T Consensus 239 v~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 239 LRVEDTGIYYCTGASY 254 (268)
T ss_dssp CCGGGCEEEEEEEEET
T ss_pred CCHHHCEEEEEEEccC
Confidence 9999999999999985
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.9e-12 Score=105.04 Aligned_cols=88 Identities=19% Similarity=0.251 Sum_probs=72.8
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEc-c---CCeEEEccCCCCCCeEEEEEEEe
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT-E---SNRLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~---~~sL~I~~v~~~D~G~Y~C~a~N 204 (558)
|+.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+..+. ++.+. . ..+|.|.+++.+|+|.|+|.
T Consensus 13 p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~--- 88 (115)
T 2cr6_A 13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANE-LNEIDAQPGGYHVLTLRQLALKDSGTIYFE--- 88 (115)
T ss_dssp CCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSS-SCCBCCBTTTBCCBEECSCCTTTCEEEEEE---
T ss_pred CCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCC-cEEEEEcCCCEEEEEEcCCChhhCEEEEEE---
Confidence 4577778888999999999999999999999999999999887654 44433 1 23799999999999999999
Q ss_pred CCceeeEEEEEEEeccC
Q psy10160 205 SYTSDENAVTIRVEGIF 221 (558)
Q Consensus 205 ~~G~~~~~~~l~V~~~~ 221 (558)
.|.....+.|.|.+++
T Consensus 89 -~g~~~~~~~L~V~~~p 104 (115)
T 2cr6_A 89 -AGDQRASAALRVTEKP 104 (115)
T ss_dssp -ETTEECCEEEEEECCS
T ss_pred -ECCeeEEEEEEEECCC
Confidence 4667777889997554
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-12 Score=118.96 Aligned_cols=156 Identities=9% Similarity=0.036 Sum_probs=99.5
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEecc------------------CCceEEEccCCeEEEccCCCCCC
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN------------------DGVHYRITESNRLHINQANATDS 195 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~------------------~~~~~~~~~~~sL~I~~v~~~D~ 195 (558)
+.+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..... ...++.+..+++|.|.+++.+|+
T Consensus 4 i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~ 83 (208)
T 3r4d_A 4 IEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDM 83 (208)
T ss_dssp EEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGC
T ss_pred ccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCC
Confidence 344456788999999999999999999999997532211 12355666678999999999999
Q ss_pred eEEEEEEEeCC-ceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhh
Q psy10160 196 GEYRCVASNSY-TSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAV 274 (558)
Q Consensus 196 G~Y~C~a~N~~-G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l 274 (558)
|.|+|.+.|.. +.....+.|.|..++..|.....+ ..+..|.... ..|.+.+.| |.+.|++++.
T Consensus 84 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~-----------~~~~~g~~v~---l~C~~~~~p-p~i~W~~~g~ 148 (208)
T 3r4d_A 84 GVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTN-----------TTVKELDSVT---LTCLSNDIG-ANIQWLFNSQ 148 (208)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESC-----------SSCCTTCCEE---EEEECSCTT-CEEEEEETTE
T ss_pred eEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCC-----------ceEeeCCCEE---EEEECCCCC-CceEEEECCE
Confidence 99999999995 566788888887654333322111 0022222333 455565655 7999999875
Q ss_pred hhhhhhh-hhh-hcccccchhhhhhhHHHhhc
Q psy10160 275 EAEAAAA-DKK-RRSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 275 ~~~~~~~-~~~-~~grth~q~a~~~t~g~~~~ 304 (558)
....... ... ..+...+..+.....|.|..
T Consensus 149 ~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 180 (208)
T 3r4d_A 149 SLQLTERMTLSQNNSILRIDPIKREDAGEYQC 180 (208)
T ss_dssp ECCCCSSEEEETTTTEEEESSCCGGGCEEEEE
T ss_pred eCCCCCCeEEcCCCCEEEEeccCHHhCeEEEE
Confidence 5432221 111 11334444455555554444
|
| >4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E | Back alignment and structure |
|---|
Probab=99.31 E-value=3e-12 Score=121.13 Aligned_cols=75 Identities=12% Similarity=0.258 Sum_probs=54.4
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCC--eEEEEECCEEeccCCceEEEc--------cCC------eEEEccCCCCC-CeE
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIP--QVFWYKDGQVIENDGVHYRIT--------ESN------RLHINQANATD-SGE 197 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~~~~~--------~~~------sL~I~~v~~~D-~G~ 197 (558)
.+....+.+|+.++|.|.+.|.|+| .+.|+|+|..+.... ..... .++ .|.|.....+| .|.
T Consensus 131 ~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~-~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~ 209 (246)
T 4dzb_B 131 EPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGV-CTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNH 209 (246)
T ss_dssp CCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTE-EECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCE
T ss_pred cCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEECCCCc-ccccccccccccCCCCCEEEEEEEEECHHHhccCCCe
Confidence 3444456679999999999997765 799999999886532 11000 122 48888888888 999
Q ss_pred EEEEEEeCCceee
Q psy10160 198 YRCVASNSYTSDE 210 (558)
Q Consensus 198 Y~C~a~N~~G~~~ 210 (558)
|+|.|.|......
T Consensus 210 YtC~v~~~~~~~~ 222 (246)
T 4dzb_B 210 FRCQVQFYGLSEN 222 (246)
T ss_dssp EEEEEEECCBCTT
T ss_pred EEEEEEecCCCCc
Confidence 9999999765543
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.2e-12 Score=114.03 Aligned_cols=119 Identities=13% Similarity=0.167 Sum_probs=87.4
Q ss_pred ceEeeCCCcEEEEeEee--ccCCCeEEEEE--CCEEec---------cCCceEEEccCCeEEEccCCCCCCeEEEEEEEe
Q psy10160 138 TQVFGVGSDISIPCDVD--GYPIPQVFWYK--DGQVIE---------NDGVHYRITESNRLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~--g~P~p~i~W~~--~g~~l~---------~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N 204 (558)
.....+|+++.|.|... +.|.|.|.|+| ++..+. ..+.|+.+..+++|.|.+++.+|+|.|+|.+.|
T Consensus 8 ~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~n 87 (182)
T 1hnf_A 8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYD 87 (182)
T ss_dssp EEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEEEe
Confidence 45568999999999653 35678899999 887762 123477788899999999999999999999999
Q ss_pred CCceee--EEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhh
Q psy10160 205 SYTSDE--NAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA 276 (558)
Q Consensus 205 ~~G~~~--~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~ 276 (558)
..|... ..+.|.|..+...|.+. ..+. . +..+|.+.+.|++.+.|++++...
T Consensus 88 ~~g~~~~~~~~~L~V~~~~~~P~i~-----------~~~~------~---v~L~C~~~~~p~~~~~W~~~g~~l 141 (182)
T 1hnf_A 88 TKGKNVLEKIFDLKIQERVSKPKIS-----------WTCI------N---TTLTCEVMNGTDPELNLYQDGKHL 141 (182)
T ss_dssp TTSCEEEEEEEEEEEECCCCCCEEE-----------EETT------T---TEEEEECSSCSSCEEEEEESSCEE
T ss_pred CCCceeEEEEEEEEEcCcCCCCEEE-----------EccC------c---EEEEeEccCCCCCEEEEEECCEEC
Confidence 988763 56788887543333221 1110 1 225666778889999999987554
|
| >3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.5e-12 Score=120.38 Aligned_cols=77 Identities=22% Similarity=0.320 Sum_probs=55.7
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeecc-CCCeEEEEECC--EEec-----------cCCceEEEcc-----CCeEEEcc
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGY-PIPQVFWYKDG--QVIE-----------NDGVHYRITE-----SNRLHINQ 189 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P~p~i~W~~~g--~~l~-----------~~~~~~~~~~-----~~sL~I~~ 189 (558)
++.+...+....+.+|+.++|.|.+.+. |.|.+.|+|.+ ..+. ....++.+.. ..+|.|.+
T Consensus 136 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 215 (259)
T 3omz_A 136 AQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISA 215 (259)
T ss_dssp -CEEECCCCCEEEETTCCEEECCEEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESS
T ss_pred CeeeEEeCCEEEEcCCCCEEEEEECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECC
Confidence 3445556667888999999999999885 88899999843 1110 0012455442 23699999
Q ss_pred CCCCCCeEEEEEEEeC
Q psy10160 190 ANATDSGEYRCVASNS 205 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N~ 205 (558)
++.+|+|.|.|.+.+.
T Consensus 216 v~~~DsG~Y~C~~~~~ 231 (259)
T 3omz_A 216 LQLEDSAKYFCALGES 231 (259)
T ss_dssp CCGGGCSEEEEEEESC
T ss_pred CChhHCEEEEEEEeCc
Confidence 9999999999999864
|
| >3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.6e-12 Score=121.54 Aligned_cols=72 Identities=15% Similarity=0.343 Sum_probs=52.2
Q ss_pred CCceEeeCCCcEEEEeEeeccCCC--eEEEEECCEEeccCC---------------ceEEEccCCeEEEccCCCCC-CeE
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIP--QVFWYKDGQVIENDG---------------VHYRITESNRLHINQANATD-SGE 197 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~g~~l~~~~---------------~~~~~~~~~sL~I~~v~~~D-~G~ 197 (558)
+....+.+|+.++|.|.+.|.|+| .+.|+|+|..+.... ..|.+ ...|.|.....+| .|.
T Consensus 153 ~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~--~s~l~i~~~~~~d~~g~ 230 (268)
T 3pl6_D 153 PSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSL--SSRLRVSATFWQNPRNH 230 (268)
T ss_dssp CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEECTTEEECSSCEESSTTCTTCCEEE--EEEEEEEHHHHSCTTCE
T ss_pred CCcccccCCCceEEEEEECcccCCCeEEEEEECCEECCCCeEeccccccccccCCCCcEEE--EEEEEEcHHHhccCCCE
Confidence 344455679999999999996665 799999998885421 12221 1257787777777 999
Q ss_pred EEEEEEeCCcee
Q psy10160 198 YRCVASNSYTSD 209 (558)
Q Consensus 198 Y~C~a~N~~G~~ 209 (558)
|+|.|.|.....
T Consensus 231 YtC~v~~~~l~~ 242 (268)
T 3pl6_D 231 FRCQVQFYGLSE 242 (268)
T ss_dssp EEEEEEECCBCT
T ss_pred EEEEEEcCCCCC
Confidence 999999976544
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-12 Score=117.21 Aligned_cols=161 Identities=12% Similarity=0.038 Sum_probs=100.8
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCce-EEEccCCeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH-YRITESNRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~-~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
+|.+...+.. .+.+|+.++|.|.+.+. .+.+.|+|+|..+...... .....+++|.|.+++.+|+|.|+|.+.|..|
T Consensus 4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~ 81 (188)
T 1oll_A 4 KPFIWAEPHF-MVPKEKQVTICCQGNYG-AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL 81 (188)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCTT-CCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred CCEEEeecCC-cCCCCCCEEEEEecCCC-CCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCC
Confidence 5666666666 78999999999999864 4689999999876521101 1112345899999999999999999999765
Q ss_pred ee--eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhhhhhh
Q psy10160 208 SD--ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAADKKR 285 (558)
Q Consensus 208 ~~--~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~~~~~ 285 (558)
.. +..+.|.|.+....|.+...+ . ..+..|.... ..|.+.+ +++.+.|++++............
T Consensus 82 ~~~~s~~~~l~V~~~~~~p~i~~~p---~-------~~v~~G~~v~---L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~ 147 (188)
T 1oll_A 82 WSEPSNLLDLVVTEMYDTPTLSVHP---G-------PEVISGEKVT---FYCRLDT-ATSMFLLLKEGRSSHVQRGYGKV 147 (188)
T ss_dssp ECCCCCCEEEEEESCSCCCEEEEES---C-------SEEETTCEEE---EEEECSS-SCSEEEEEEESSSCEEEEEECSS
T ss_pred CCCCCCceEEEecccCCCCeEEECC---C-------CccccCCEEE---EEEEcCC-CCCEEEEEECCccccccccCCCc
Confidence 43 466788886544333322111 1 1122333344 4555534 56789999987543321111122
Q ss_pred cccccchhhhhhhHHHhhcc
Q psy10160 286 RSRRSLSVVNKWSLRQAFTT 305 (558)
Q Consensus 286 ~grth~q~a~~~t~g~~~~~ 305 (558)
.+..++..+++...|.|...
T Consensus 148 ~~~L~I~~v~~~d~G~Y~C~ 167 (188)
T 1oll_A 148 QAEFPLGPVTTAHRGTYRCF 167 (188)
T ss_dssp EEEEEEEECCGGGCEEEEEE
T ss_pred eeEEEECCCCcCCCcEEEEE
Confidence 34456666777777766653
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.5e-12 Score=113.14 Aligned_cols=147 Identities=14% Similarity=0.148 Sum_probs=97.7
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCe-EEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQ-VFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
.+|.+...+....+.+|+.+.|.|.+.+.|.|. +.|+|++..+.. .+++|.|.+++.+|+|.|+|.+.|..
T Consensus 6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~--------~~~~L~i~~~~~~d~G~Y~C~~~n~~ 77 (175)
T 1fnl_A 6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS--------QASSYFIDAATVNDSGEYRCQTNLST 77 (175)
T ss_dssp CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES--------SCSEEEESSCCGGGCEEEEEECSSSC
T ss_pred CCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC--------CceEEEEeCCCcccCEEEEEEeeCCc
Confidence 466777788888899999999999999999887 889999987753 34689999999999999999999966
Q ss_pred ceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCC-Ccccccchhhhhhhhhhhhhh
Q psy10160 207 TSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLP-SYGPHIKRAVEAEAAAADKKR 285 (558)
Q Consensus 207 G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~-~~~~w~~~~l~~~~~~~~~~~ 285 (558)
+ +..+.|.|..++ ..... . ...+..|.... ..|.+.+.++ +.+.|++++...... ..
T Consensus 78 ~--s~~~~l~V~~~~---~~~~~----~------~~~~~~g~~~~---l~C~~~~~~~~~~~~W~k~g~~~~~~----~~ 135 (175)
T 1fnl_A 78 L--SDPVQLEVHIGW---LLLQA----P------RWVFKEEDPIH---LRCHSWKNTALHKVTYLQNGKDRKYF----HH 135 (175)
T ss_dssp C--CCCEEEEEECSS---EEEEC----S------CSEEETTCCEE---EEEEECTTCCCEEEEEEETTEEEEEE----EE
T ss_pred c--cccEEEEEeCCC---ceeeC----C------CceecCCCCEE---EEEEcCCCCCceEEEEEECCeEccCC----CC
Confidence 5 445666665221 11110 1 11122333344 4454556655 599999987554211 11
Q ss_pred cccccchhhhhhhHHHhhc
Q psy10160 286 RSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 286 ~grth~q~a~~~t~g~~~~ 304 (558)
.+...+..+.....|.|..
T Consensus 136 ~~~L~i~~v~~~d~G~Y~C 154 (175)
T 1fnl_A 136 NSDFHIPKATLKDSGSYFC 154 (175)
T ss_dssp CCCEEESSCCGGGCEEEEE
T ss_pred CCEEEEcccChhhCeEEEE
Confidence 2344455555565665554
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=101.37 Aligned_cols=87 Identities=20% Similarity=0.296 Sum_probs=67.6
Q ss_pred CcEEEecCCc---eEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccC---CeEEEccCCCCCCeEEEEEE
Q psy10160 129 PVKVNITLET---QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES---NRLHINQANATDSGEYRCVA 202 (558)
Q Consensus 129 p~~~~~~~~~---~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~---~sL~I~~v~~~D~G~Y~C~a 202 (558)
||.+...+.. ..+.+|+.+.|.|.+. .|.|.+.|+|++..+..+. ++.+..+ .+|.|.+++.+|+|.|+|.|
T Consensus 10 pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 87 (113)
T 2cpc_A 10 VSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESP-ALLLQKEDTVRRLVLPAVQLEDSGEYLCEI 87 (113)
T ss_dssp CSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBT-TBEEEECSSEEEEEESSCCTTTCEEEEEES
T ss_pred CCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCC-CEEEEECCCEEEEEECCCCcccCEEEEEEE
Confidence 4444444433 5678999999999995 8999999999999887654 4444443 47999999999999999999
Q ss_pred EeCCceeeEEEEEEEeccC
Q psy10160 203 SNSYTSDENAVTIRVEGIF 221 (558)
Q Consensus 203 ~N~~G~~~~~~~l~V~~~~ 221 (558)
.| .+..+.|.|..++
T Consensus 88 ~n----~~~~~~l~V~~~p 102 (113)
T 2cpc_A 88 DD----ESASFTVTVTEPP 102 (113)
T ss_dssp SS----CEEEEEEEEECCC
T ss_pred ec----CcEEEEEEEecCC
Confidence 99 5667888887544
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.1e-12 Score=114.87 Aligned_cols=128 Identities=13% Similarity=0.129 Sum_probs=87.7
Q ss_pred cCCceEeeCCCcEEEEeEeec-cCCCeEEEEECCEEec---cC----------C----ceEEEccCCeEEEccCCCCCCe
Q psy10160 135 TLETQVFGVGSDISIPCDVDG-YPIPQVFWYKDGQVIE---ND----------G----VHYRITESNRLHINQANATDSG 196 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g-~P~p~i~W~~~g~~l~---~~----------~----~~~~~~~~~sL~I~~v~~~D~G 196 (558)
.+....+.+|+.++|.|.+.+ .|.+.|.|+|++..+. .. . .|+.+..+++|.|.+++.+|+|
T Consensus 4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G 83 (193)
T 2if7_A 4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTG 83 (193)
T ss_dssp CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCE
T ss_pred CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCc
Confidence 345667889999999999976 5567999999986542 10 1 2455556789999999999999
Q ss_pred EEEEEEEeCCceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCC-CCCcccccchhhh
Q psy10160 197 EYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQ-LPSYGPHIKRAVE 275 (558)
Q Consensus 197 ~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~-~~~~~~w~~~~l~ 275 (558)
.|+|.+.|..|.....+.|.|..++..|.+... ......+ .......|.+.|. |+|.+.|++++..
T Consensus 84 ~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~-----------~~~~~~g--~~~v~L~C~~~g~~p~p~i~W~~~g~~ 150 (193)
T 2if7_A 84 SYRAQISTKTSAKLSSYTLRILRQLRNIQVTNH-----------SQLFQNM--TCELHLTCSVEDADDNVSFRWEALGNT 150 (193)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCEEEEEEEC-----------CC---CS--SEEEEEEEEEESCCTTCEEEEEETTEE
T ss_pred eEEEEEEecCCCeEEEEEEEEEccCCCCeEecC-----------ceeecCC--CceEEEEEEEecCCCceEEEEEeCCEE
Confidence 999999999998777888998654322221110 0000111 1134456666674 5889999998643
|
| >3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-11 Score=131.56 Aligned_cols=124 Identities=20% Similarity=0.360 Sum_probs=85.7
Q ss_pred ceE-ecCCeEEEcCCCCCCCEEEEEEEEeCCcceE--EEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEEe
Q psy10160 8 NYE-LNKNMLTIKRVEPERLGAYTCQAYNGLGRAV--SWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQTT 84 (558)
Q Consensus 8 r~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~--s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~~ 84 (558)
|+. ..+++|.|.+++.+|+|.|+|.+.|..|... +..|.|...|..
T Consensus 425 r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~------------------------------- 473 (581)
T 3o3u_N 425 VARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGK------------------------------- 473 (581)
T ss_dssp TSEECTTSCEEESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEBCCCC-------------------------------
T ss_pred cEEEcCCceEEEeccccccCeEEEEEEEcCCCceeEEEEEEEEEcCCCC-------------------------------
Confidence 444 4567999999999999999999999988763 345555443221
Q ss_pred CCcccCCCCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCc-EEEEeEeec-cCCCeEE
Q psy10160 85 TTTTEATSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSD-ISIPCDVDG-YPIPQVF 162 (558)
Q Consensus 85 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~-v~L~C~~~g-~P~p~i~ 162 (558)
|.+. +....+.+|+. +.|.|.+.| +|.|.+.
T Consensus 474 ---------------------------------------------p~i~--~~~~~~~~~~~~~~l~C~~~~~~P~~~i~ 506 (581)
T 3o3u_N 474 ---------------------------------------------PEIV--DSASELTAGVPNKVGTCVSEGSYPAGTLS 506 (581)
T ss_dssp ---------------------------------------------CEEE--SCCSEECTTSCEEEEEEEEEEEBSCCEEE
T ss_pred ---------------------------------------------CEEE--cCCcccccCCceeEEEEECCCCCCCCeEE
Confidence 1111 11112344544 567999998 6999999
Q ss_pred EEECCEEeccCCceEEEc-------cC------CeEEEccCCCCC-CeEEEEEEEeCCcee
Q psy10160 163 WYKDGQVIENDGVHYRIT-------ES------NRLHINQANATD-SGEYRCVASNSYTSD 209 (558)
Q Consensus 163 W~~~g~~l~~~~~~~~~~-------~~------~sL~I~~v~~~D-~G~Y~C~a~N~~G~~ 209 (558)
|+++|..+...+.++.+. .. ++|.|.+++.+| .|.|+|.|+|..+..
T Consensus 507 W~~~g~~l~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~ 567 (581)
T 3o3u_N 507 WHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRH 567 (581)
T ss_dssp EEETTEECCTTSTTEEEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSS
T ss_pred EEECCEECCCCCCeEEEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCCC
Confidence 999999987644333221 11 369999998444 889999999997544
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B | Back alignment and structure |
|---|
Probab=99.29 E-value=5.3e-12 Score=112.31 Aligned_cols=116 Identities=14% Similarity=0.097 Sum_probs=83.5
Q ss_pred ceEeeCCCcEEEEeEeeccCCCeEEEEECCEEecc-----------CCceEEEc-cCCeEEEccCCCCCCeEEEEEEEeC
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN-----------DGVHYRIT-ESNRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~-----------~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
...+.+|+.|+|.|.+.+ |.|.|.|+|++..+.. -..|+.+. .+++|.|.+++.+|+|.|+|.+.|.
T Consensus 4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~ 82 (171)
T 1ccz_A 4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI 82 (171)
T ss_dssp EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence 456789999999999854 8899999998864421 01244443 5689999999999999999999998
Q ss_pred CceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhh
Q psy10160 206 YTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA 276 (558)
Q Consensus 206 ~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~ 276 (558)
.| ...+.|.|.+++..|.+. .... .. ...|.+.+.|+|.+.|++++...
T Consensus 83 ~~--~~~~~L~V~~~~~~p~i~-----------~~~~------~~---~L~C~~~~~p~p~i~W~~~~~~l 131 (171)
T 1ccz_A 83 TD--TMKFFLYVLEMVSKPMIY-----------WECS------NA---TLTCEVLEGTDVELKLYQGKEHL 131 (171)
T ss_dssp CS--CEEEEEEEECCCCCCEEE-----------EETT------TT---EEEEECSSCSSCEEEEEETTEEE
T ss_pred CC--cEEEEEEEECcCCCCEEE-----------EecC------Cc---EEEEEeCCCCCcEEEEEECCEEC
Confidence 88 677888887654322221 1110 01 25677778899999999986443
|
| >4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=117.10 Aligned_cols=72 Identities=17% Similarity=0.383 Sum_probs=52.1
Q ss_pred CCceEeeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCC---------------ceEEEccCCeEEEccCCCCC-CeE
Q psy10160 136 LETQVFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDG---------------VHYRITESNRLHINQANATD-SGE 197 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~---------------~~~~~~~~~sL~I~~v~~~D-~G~ 197 (558)
+....+.+|+.++|.|.+.|. |.| .+.|+++|..+.... ..|.+ ...|.|.....+| .|.
T Consensus 131 ~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~d~~g~ 208 (245)
T 4ei6_B 131 PSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYAL--SSRLRVSATFWQNPRNH 208 (245)
T ss_dssp CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEE--EEEEEEEHHHHSCTTCE
T ss_pred CCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEE--EEEEEEcHHHhccCCCe
Confidence 344445679999999999994 545 799999999886531 11111 1248888888888 999
Q ss_pred EEEEEEeCCcee
Q psy10160 198 YRCVASNSYTSD 209 (558)
Q Consensus 198 Y~C~a~N~~G~~ 209 (558)
|+|.|.|.....
T Consensus 209 ytC~v~~~~l~~ 220 (245)
T 4ei6_B 209 FRCQVQFYGLSE 220 (245)
T ss_dssp EEEEEEECCBCT
T ss_pred EEEEEEECCCCC
Confidence 999999975443
|
| >3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-12 Score=122.19 Aligned_cols=66 Identities=18% Similarity=0.350 Sum_probs=35.6
Q ss_pred eeCCCcEEEEeEeecc-CCC-eEEEEECCEEecc--------CCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 141 FGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIEN--------DGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~--------~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
+.+|+.++|.|.+.|. |.| .|.|++++..+.. .+..|.. .+.|.|.++..+| |.|+|.|.|.....
T Consensus 145 ~~~g~~v~L~C~~~g~~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~--~s~L~I~~~~~~~-g~YtC~v~n~~~~~ 220 (257)
T 3bn9_D 145 STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL--SSVVTVPSSSLGT-QTYICNVNHKPSNT 220 (257)
T ss_dssp --------CCCEEEEEBSSCCEEEETTTTCCSSCEECCCEECTTSCEEE--EEECCCC--------CEEEEEEEGGGTE
T ss_pred ccCCCcEEEEEEEeeEECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEE--EEEEEEcccccCC-CeEEEEEEecCCCc
Confidence 5679999999999986 888 8999999876421 1112221 1357888888778 99999999965443
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A | Back alignment and structure |
|---|
Probab=99.28 E-value=5.3e-12 Score=113.99 Aligned_cols=149 Identities=15% Similarity=0.092 Sum_probs=91.4
Q ss_pred EeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEcc-CCCCCCeEEEEEEEeCCceeeEEEEEEEe
Q psy10160 140 VFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQ-ANATDSGEYRCVASNSYTSDENAVTIRVE 218 (558)
Q Consensus 140 ~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~-v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 218 (558)
+..+|+.+.|.|.+.| |. .|.|+|+|..+... .+++|.|.+ ++.+|+|.|+|.|.|..|.....+.+.|.
T Consensus 10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~-------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~ 80 (186)
T 1jbj_A 10 VSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK-------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVG 80 (186)
T ss_dssp EEEETTEEEEECSSCC-CT-TCEEEETTEEECSC-------CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCC
T ss_pred EEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC-------CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEe
Confidence 3467999999999988 54 49999999988653 345899999 99999999999999999997777766664
Q ss_pred ccCCCCCCCC---------CCccccceeEEec--eeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhhhhhhcc
Q psy10160 219 GIFIHPSCRD---------LPLFANCKLIVEG--RYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAADKKRRS 287 (558)
Q Consensus 219 ~~~~~p~~~~---------~~~~~~~~~~~~~--~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~~~~~~g 287 (558)
....++.... .+...... .... ..+.....+......|.+ |+|.+.|++++........ ..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~---~~~ 153 (186)
T 1jbj_A 81 SADDAKKDAAKKDDAKKDDAKKDGSQT-NKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA---TKN 153 (186)
T ss_dssp SCCCCCCCCCCCCCCSCCSSSTTCCSC-CCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC---CSS
T ss_pred cccccccccccccccccCCcccccccc-ccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC---Ccc
Confidence 3322211000 00000000 0000 000111135555677765 8899999999866432111 223
Q ss_pred cccchhhhhhhHHHhhc
Q psy10160 288 RRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 288 rth~q~a~~~t~g~~~~ 304 (558)
...+..+.+...|.|..
T Consensus 154 ~L~i~~v~~~D~G~Y~C 170 (186)
T 1jbj_A 154 TWNLGNNAKDPRGTYQC 170 (186)
T ss_dssp CCEEEETTSCCEEEEEE
T ss_pred eEEECCCCcCcCEEEEE
Confidence 34445555555555543
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.8e-12 Score=115.61 Aligned_cols=124 Identities=18% Similarity=0.235 Sum_probs=84.0
Q ss_pred ceEeeCCCcEEEEeEee----ccCCCeEEEEECCEEecc--C---------CceEE--EccCCeEEEccCCCCCCeEEEE
Q psy10160 138 TQVFGVGSDISIPCDVD----GYPIPQVFWYKDGQVIEN--D---------GVHYR--ITESNRLHINQANATDSGEYRC 200 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~----g~P~p~i~W~~~g~~l~~--~---------~~~~~--~~~~~sL~I~~v~~~D~G~Y~C 200 (558)
...+.+|+.+.|.|.+. +.|.|.+.|++++..+.. . ..+.. ...+.+|.|.+++.+|+|.|+|
T Consensus 3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C 82 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC 82 (201)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence 45678999999999985 567889999999987621 0 01222 2345689999999999999999
Q ss_pred EEEeCCcee-----eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCC-CCCCCcccccchhh
Q psy10160 201 VASNSYTSD-----ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRA-GQLPSYGPHIKRAV 274 (558)
Q Consensus 201 ~a~N~~G~~-----~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~-g~~~~~~~w~~~~l 274 (558)
.+.|..|.. ...+.|.|..++..|... .... .. +......|.+. |.|+|.+.|++++.
T Consensus 83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~-----------~~~~--~~---g~~~~l~C~~~~g~P~p~i~W~k~g~ 146 (201)
T 1dr9_A 83 VVLKYEKDAFKREHLAEVTLSVKADFPTPSIS-----------DFEI--PT---SNIRRIICSTSGGFPEPHLSWLENGE 146 (201)
T ss_dssp EEEECCTTSCEEEEEEEEEEEEECCCCCCEEE-----------EEEC--SS---TTEEEEEEEEEEESSCEEEEEEESSC
T ss_pred EEEcCCCCccccccccEEEEEEcCCCCCCceE-----------eccC--CC---CCeEEEEEecCCccCCCEEEEEECCE
Confidence 999987654 356777776543222211 1000 11 22333556563 88999999999865
Q ss_pred hhh
Q psy10160 275 EAE 277 (558)
Q Consensus 275 ~~~ 277 (558)
...
T Consensus 147 ~l~ 149 (201)
T 1dr9_A 147 ELN 149 (201)
T ss_dssp EEC
T ss_pred ECc
Confidence 443
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-12 Score=131.28 Aligned_cols=158 Identities=13% Similarity=0.070 Sum_probs=110.4
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCe-EEEEEEEeCC
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSG-EYRCVASNSY 206 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G-~Y~C~a~N~~ 206 (558)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.....+.....+++|.|.+++.+|+| .|+|.|.|..
T Consensus 157 ~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~ 236 (347)
T 2ifg_A 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDV 236 (347)
T ss_dssp CCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETT
T ss_pred CCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecccceEEEeeCChHHCCCeEEEEEEcCC
Confidence 477788888888899999999999999999999999999876543221222334568999999999999 9999999999
Q ss_pred ceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhh-hh--
Q psy10160 207 TSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAA-DK-- 283 (558)
Q Consensus 207 G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~-~~-- 283 (558)
|..+..+.|.|..++.. ... . ... +......|.+.|.|+|.+.|++++........ ..
T Consensus 237 g~~~~~~~l~V~~~P~i--~~~------------~--~~~---g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~ 297 (347)
T 2ifg_A 237 GRAEVSVQVNVSFPASV--QLH------------T--AVE---MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEF 297 (347)
T ss_dssp EECCEEECCCCBEEEEE--EEC------------C--CEE---SSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE
T ss_pred CCEEEEEEEEEcCCCee--eec------------c--Ccc---CceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEE
Confidence 99988888888554321 000 0 011 23344666677999999999998765542221 10
Q ss_pred --------hhcccccchhhhhhhHHHhhc
Q psy10160 284 --------KRRSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 284 --------~~~grth~q~a~~~t~g~~~~ 304 (558)
...+..++..+.....|.|..
T Consensus 298 ~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C 326 (347)
T 2ifg_A 298 LEPAANETVRHGCLRLNQPTHVNNGNYTL 326 (347)
T ss_dssp CCCCTTCCCEEEEEEESSCCGGGCEEEEE
T ss_pred EeecCCCcccceEEEECCCCcccCceEEE
Confidence 112334555666666665544
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-11 Score=111.91 Aligned_cols=148 Identities=16% Similarity=0.171 Sum_probs=98.6
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCe-EEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQ-VFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
.|.+...+....+.+|+.+.|.|.+.+.|.|. +.|+|+|..+... .++|.|.+++.+|+|.|+|.+.|.
T Consensus 7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~--------~~~L~i~~v~~~D~G~Y~C~a~n~-- 76 (204)
T 3sgj_C 7 KAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ--------ASSYFIDAATVDDSGEYRCQTQLS-- 76 (204)
T ss_dssp BCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC--------SSEEEESSCCGGGCEEEEEEETTS--
T ss_pred CCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC--------ccEEEEecccccCCEEEEEEeCCC--
Confidence 45666777778899999999999999999887 9999999887643 268999999999999999999984
Q ss_pred eeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhhhhhhcc
Q psy10160 208 SDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAADKKRRS 287 (558)
Q Consensus 208 ~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~~~~~~g 287 (558)
..+..+.|.|..++ .....+ . ..+..|....+.|... .+.|.+.+.|++++....... ..+
T Consensus 77 ~~s~~~~l~V~~~p---~~~~~~---~-------~~v~~G~~v~L~C~~~--~~~p~~~v~W~k~g~~~~~~~----~~~ 137 (204)
T 3sgj_C 77 TLSDPVQLEVHIGW---LLLQAP---R-------WVFKEEDPIHLRCHSW--KNTALHKVTYLQNGKGRKYFH----HNS 137 (204)
T ss_dssp BCCCCEEEEEECSS---EEEECS---C-------SEEETTCCEEEEEEEG--GGCCCEEEEEEETTEEEEEEE----ECC
T ss_pred cccccEEEEEecCc---eEecCC---c-------eeEeCCCcEEEEEEec--CCCCCceEEEEECCcEeeccc----CCc
Confidence 44456677775432 111111 1 1122333444455432 234668899999875532111 123
Q ss_pred cccchhhhhhhHHHhhcc
Q psy10160 288 RRSLSVVNKWSLRQAFTT 305 (558)
Q Consensus 288 rth~q~a~~~t~g~~~~~ 305 (558)
...+..+.....|.|...
T Consensus 138 ~L~i~~v~~~D~G~Y~C~ 155 (204)
T 3sgj_C 138 DFYIPKATLKDSGSYFCR 155 (204)
T ss_dssp CEEESSCCGGGCEEEEEE
T ss_pred eEEECcCCcccCEEEEEE
Confidence 445555566666666553
|
| >1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H* | Back alignment and structure |
|---|
Probab=99.27 E-value=8.4e-12 Score=115.50 Aligned_cols=70 Identities=17% Similarity=0.302 Sum_probs=46.5
Q ss_pred eeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCCceEEEccCCeE----EEccCCCCCCeEEEEEEEeCCceeeEE
Q psy10160 141 FGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGVHYRITESNRL----HINQANATDSGEYRCVASNSYTSDENA 212 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~~sL----~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 212 (558)
+.+|+.+.|.|.+.|. |.| .+.|++++..+......... .++.. .+.....+| |.|+|.|.|..|.....
T Consensus 134 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~-~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~~ 209 (215)
T 1c5d_H 134 DTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVHTFPAVL-QSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKVD 209 (215)
T ss_dssp CCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCSCCBCCCEE-ETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEEE
T ss_pred hccCCcEEEEEEEeeeEcCCcEEEEccCCccCceEecCccc-CCCCEEEEEEEecccCCC-CeEEEEEEeCCCCccEE
Confidence 4689999999999997 888 89999988654321101111 11211 122444466 99999999998876543
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A | Back alignment and structure |
|---|
Probab=99.27 E-value=6.8e-12 Score=102.25 Aligned_cols=86 Identities=22% Similarity=0.555 Sum_probs=70.2
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCC---eEEEccCCCCCCeEEEEEEEe
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~N 204 (558)
.||.+...+....+.+|+.+.|.|.+.+. |.+.|+|++..+..+. ++.+..++ +|.|.+++.+|+|.|+|.|.|
T Consensus 7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 83 (108)
T 2dm7_A 7 GPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGG-RYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ 83 (108)
T ss_dssp CCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSS-SCEEEEETTEEEEEESSCCTTTCSEEEEEETT
T ss_pred CCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCC-CEEEEecCCEEEEEECCCCcccCEEEEEEEcC
Confidence 57777777888899999999999999875 6899999998887543 56555555 499999999999999999944
Q ss_pred CCceeeEEEEEEEecc
Q psy10160 205 SYTSDENAVTIRVEGI 220 (558)
Q Consensus 205 ~~G~~~~~~~l~V~~~ 220 (558)
....+.|.|..+
T Consensus 84 ----~~~~~~l~V~~~ 95 (108)
T 2dm7_A 84 ----ERTSATLTVRAL 95 (108)
T ss_dssp ----EEEEEECEEECC
T ss_pred ----CEEEEEEEEecC
Confidence 567778888654
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.4e-12 Score=120.25 Aligned_cols=181 Identities=18% Similarity=0.222 Sum_probs=83.5
Q ss_pred CCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCCCcccc-CceeEEeccCCCCCCcEEEEeCCcccC--------
Q psy10160 21 VEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPNAIDY-GTILSSAFPSESASPVVTQTTTTTTEA-------- 90 (558)
Q Consensus 21 v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~~~v~~-~~~~~~~~~~~~p~p~v~W~~~~~~~~-------- 90 (558)
.++.|.|.|.|.+.|..|... +..+.|...|.. ..+.. ..+.+.|...+ +.+.+.|++......
T Consensus 3 ~~~~~~~~y~~~~~~~~g~~~~~~~~~v~~~p~~-----v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~ 76 (270)
T 3qib_D 3 NERADLIAYLKQATKGGGGSGGGGGMKVIQTPRY-----LVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQ 76 (270)
T ss_dssp -------------------------CCCEEECSE-----EEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEE
T ss_pred chhhhHHHHHHHHhccCCccccccceeEEeCCCe-----EEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEEC
Confidence 467899999999999876542 333333332211 22334 46668887654 788999998321100
Q ss_pred --------------------CC----------CceeeccccceeeceeE---EeeccceeeEEeeeceeeeCcEEE-ecC
Q psy10160 91 --------------------TS----------PHVYAALTHCVPWSNVC---LFGARSGYLKETQNGGYLVPVKVN-ITL 136 (558)
Q Consensus 91 --------------------~~----------~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~-~~~ 136 (558)
.. .....|.|.|.+.+... ........+..........+|.+. ..+
T Consensus 77 ~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~ 156 (270)
T 3qib_D 77 NQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEP 156 (270)
T ss_dssp TTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEEC
T ss_pred CCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECC
Confidence 00 00013444444432100 000000111111111111244443 334
Q ss_pred CceEeeCCCcEEEEeEeec-cCCC-eEEEEECCEEeccCC---------------ceEEEccCCeEEEccCCCCC-CeEE
Q psy10160 137 ETQVFGVGSDISIPCDVDG-YPIP-QVFWYKDGQVIENDG---------------VHYRITESNRLHINQANATD-SGEY 198 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g-~P~p-~i~W~~~g~~l~~~~---------------~~~~~~~~~sL~I~~v~~~D-~G~Y 198 (558)
....+.+|+.++|.|.+.| .|.| .+.|+|+|..+.... ..|.+ ...|.|.....+| .|.|
T Consensus 157 ~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~~g~Y 234 (270)
T 3qib_D 157 SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYAL--SSRLRVSATFWQNPRNHF 234 (270)
T ss_dssp CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEE--EEEEEEEHHHHHSTTCEE
T ss_pred CccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEE--EEEEEEcHHHhccCCCeE
Confidence 4444567999999999999 6767 799999999886521 11211 1257888887777 9999
Q ss_pred EEEEEeCCcee
Q psy10160 199 RCVASNSYTSD 209 (558)
Q Consensus 199 ~C~a~N~~G~~ 209 (558)
+|.|.|.....
T Consensus 235 tC~v~~~~l~~ 245 (270)
T 3qib_D 235 RCQVQFYGLSE 245 (270)
T ss_dssp EEEEEECCBCT
T ss_pred EEEEEecCCCC
Confidence 99999976544
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A | Back alignment and structure |
|---|
Probab=99.27 E-value=5.2e-12 Score=117.92 Aligned_cols=132 Identities=13% Similarity=0.129 Sum_probs=90.8
Q ss_pred cCCceEeeCCCcEEEEeEeeccCC-CeEEEEECCEEec---------cC---CceEE----------EccCCeEEEccCC
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPI-PQVFWYKDGQVIE---------ND---GVHYR----------ITESNRLHINQAN 191 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~-p~i~W~~~g~~l~---------~~---~~~~~----------~~~~~sL~I~~v~ 191 (558)
.+....+.+|+.+.|.|.+.+.|. |.+.|++++.... .. ..++. +..+++|.|.+++
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~ 85 (231)
T 2pet_A 6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQ 85 (231)
T ss_dssp CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCC
T ss_pred CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccC
Confidence 355677899999999999999995 8999998653311 00 12333 5566789999999
Q ss_pred CCCCeEEEEEEEeCC-ceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccC-CCCCCCcccc
Q psy10160 192 ATDSGEYRCVASNSY-TSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTR-AGQLPSYGPH 269 (558)
Q Consensus 192 ~~D~G~Y~C~a~N~~-G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~-~g~~~~~~~w 269 (558)
.+|+|.|+|.+.|.. |.....+.|.|..++..|.+...+... .+..|... ....|.+ .+.|+|.+.|
T Consensus 86 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~---------~~~~g~~~--~~l~C~~~~~~p~p~i~W 154 (231)
T 2pet_A 86 VGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTL---------SVMEDSAQ--EIATCNSRNGNPAPKITW 154 (231)
T ss_dssp GGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSC---------CTTCCSEE--EEEEEEEEEEBSCCEEEE
T ss_pred cccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcce---------eecCCCce--EEEEEEeECcccCCEEEE
Confidence 999999999999997 888888999997665443322111100 00111111 1345555 5899999999
Q ss_pred cchhhhhh
Q psy10160 270 IKRAVEAE 277 (558)
Q Consensus 270 ~~~~l~~~ 277 (558)
++++....
T Consensus 155 ~~~~~~~~ 162 (231)
T 2pet_A 155 YRNGQRLE 162 (231)
T ss_dssp EETTEECC
T ss_pred EECCccCc
Confidence 99876543
|
| >2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.8e-12 Score=119.42 Aligned_cols=68 Identities=19% Similarity=0.344 Sum_probs=49.2
Q ss_pred eeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccC--C-----ceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeE
Q psy10160 141 FGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIEND--G-----VHYRITESNRLHINQANATDSGEYRCVASNSYTSDEN 211 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~--~-----~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~ 211 (558)
+.+|+.++|.|.+.|. |.| .+.|++++..+... . ..|. ..+.|.|.++..+| |.|+|.|.|.......
T Consensus 141 v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~g~~~--~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~ 217 (261)
T 2xqy_G 141 DTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYT--LSSSVTVTSSTWPS-QSITCNVAHPASSTKV 217 (261)
T ss_dssp --CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEE--EEEEEEEETTTTTT-SCCEEEEEEGGGTEEE
T ss_pred ccCCCcEEEEEEEEeEeCCCCEEEEecCCCcCceEecCceecCCcEE--EEEEEEEeccccCC-CEEEEEEEECCCCccE
Confidence 5679999999999985 777 89999998764311 1 1222 12469999998888 9999999997655433
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=123.82 Aligned_cols=106 Identities=12% Similarity=0.147 Sum_probs=71.6
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccC---CceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeE
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEND---GVHYRITESNRLHINQANATDSGEYRCVASNSYTSDEN 211 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~---~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~ 211 (558)
.+....+.+|+.+.|.|.+.| |.|.+.|++++..+... ..++.+ .+++|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus 252 ~~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~ 329 (361)
T 2xot_A 252 KESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSV-RNGDLFFKKVQVEDGGVYTCYAMGETFNETL 329 (361)
T ss_dssp CCCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEE-ETTEEEESSCCTTSCEEEEEEEECSSCEEEE
T ss_pred cccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEe-ecCeEEEeecCcccCEEEEEEEecCCCccEE
Confidence 345668899999999999999 99999999987654332 236666 7889999999999999999999999999999
Q ss_pred EEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCccc
Q psy10160 212 AVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGP 268 (558)
Q Consensus 212 ~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~ 268 (558)
.+.|.|...+ .. +......|.+.|.|+|.++
T Consensus 330 ~~~l~V~~~~-----------------~~---------g~~~~l~C~~~g~P~P~i~ 360 (361)
T 2xot_A 330 SVELKVYNFT-----------------LH---------GHHDTLNAAADPWSHPQFE 360 (361)
T ss_dssp EEEEEEESSC-----------------CC----------------------------
T ss_pred EEEEEEEeee-----------------cc---------CCceEEEEEeCCCCCCccc
Confidence 9999995421 00 2223356777899988764
|
| >3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A | Back alignment and structure |
|---|
Probab=99.26 E-value=9e-12 Score=117.34 Aligned_cols=74 Identities=14% Similarity=0.284 Sum_probs=53.1
Q ss_pred CCceEeeCCCcEEEEeEeec-cCCC-eEEEEECCEEeccCCceE---EEccCC------eEEEccCCCCC-CeEEEEEEE
Q psy10160 136 LETQVFGVGSDISIPCDVDG-YPIP-QVFWYKDGQVIENDGVHY---RITESN------RLHINQANATD-SGEYRCVAS 203 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g-~P~p-~i~W~~~g~~l~~~~~~~---~~~~~~------sL~I~~v~~~D-~G~Y~C~a~ 203 (558)
+....+.+|+.+.|.|.+.| .|.| .+.|+++|..+....... ....++ .|.|..+..+| .|.|+|.|.
T Consensus 129 ~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~ 208 (240)
T 3q5y_A 129 PSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQ 208 (240)
T ss_dssp CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEE
T ss_pred CchhhcccCCceEEEEEEeeEECCCeEEEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEE
Confidence 34444567999999999999 6666 689999999886532110 111222 48899998888 779999999
Q ss_pred eCCcee
Q psy10160 204 NSYTSD 209 (558)
Q Consensus 204 N~~G~~ 209 (558)
|.....
T Consensus 209 ~~~~~~ 214 (240)
T 3q5y_A 209 FHGLSE 214 (240)
T ss_dssp ECCBCT
T ss_pred cCCCCC
Confidence 976544
|
| >1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=116.97 Aligned_cols=74 Identities=15% Similarity=0.238 Sum_probs=52.6
Q ss_pred EeeCCCcEEEEeEeecc-CC-CeEEEEECCE-EeccCC--------ceEEEccCCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 140 VFGVGSDISIPCDVDGY-PI-PQVFWYKDGQ-VIENDG--------VHYRITESNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 140 ~v~~G~~v~L~C~~~g~-P~-p~i~W~~~g~-~l~~~~--------~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
.+.+|+.+.|.|.+.|. |. |.+.|++++. .+.... ..|.. ..+|.|.++.. | |.|+|.|.|..+.
T Consensus 143 ~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~--~s~L~i~~~~~-~-g~y~C~v~n~~~~ 218 (242)
T 1hxm_B 143 ETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMK--FSWLTVPEKSL-D-KEHRCIVRHENNK 218 (242)
T ss_dssp GGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEE--EEEEEECTGGG-G-SCEEEEEEETTSG
T ss_pred hcccCCCceEEEEEeeEECCCeEEEEEcCCCEeecCccccceecCCCcEEE--EEEEEEccccC-C-CEEEEEEEeCCCC
Confidence 35679999999999987 65 6899999987 553211 11211 13688887765 5 9999999999987
Q ss_pred eeEEEEEEE
Q psy10160 209 DENAVTIRV 217 (558)
Q Consensus 209 ~~~~~~l~V 217 (558)
......+.+
T Consensus 219 ~~~~~~~~~ 227 (242)
T 1hxm_B 219 NGVDQEIIF 227 (242)
T ss_dssp GGSCEEEEE
T ss_pred CCceeEeec
Confidence 755545544
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-12 Score=119.51 Aligned_cols=150 Identities=15% Similarity=0.111 Sum_probs=94.9
Q ss_pred CCCcEEEEeEeecc-CCCeEEEEECCEEeccCCceEEEccC---CeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEe
Q psy10160 143 VGSDISIPCDVDGY-PIPQVFWYKDGQVIENDGVHYRITES---NRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218 (558)
Q Consensus 143 ~G~~v~L~C~~~g~-P~p~i~W~~~g~~l~~~~~~~~~~~~---~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 218 (558)
.++.+.|.|.+.+. |.|.+.|+|+|..+..++ ++.+... .+|.|.+++.+|+|.|+|.+.|..|.....+.|.|.
T Consensus 16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~-~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~ 94 (212)
T 2r15_A 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD-RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ 94 (212)
T ss_dssp CSSEEEEEEEBSSCCSSCEEEEEETTEECCCCS-SEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHH
T ss_pred cCceEEEEEEEeccCCCceEEEEECCEEccCCC-eEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEe
Confidence 57788899998885 588999999999987654 4443332 259999999999999999999999988877777664
Q ss_pred ccC-----------------CCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhh
Q psy10160 219 GIF-----------------IHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAA 281 (558)
Q Consensus 219 ~~~-----------------~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~ 281 (558)
... ..|..... .... ..+..|.... ..|.+.|.|+|.+.|++++........
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~------~~v~~g~~~~---l~C~~~g~p~p~v~W~~~~~~~~~~~~ 163 (212)
T 2r15_A 95 AYDEAYAEFQRLKQAAIAEKNRARVLGG--LPDV------VTIQEGKALN---LTCNVWGDPPPEVSWLKNEKALAQTDH 163 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCEEEEB--CCSE------EEEETTCCEE---EEEEEECSSCCEEEEEETTEEECCCSS
T ss_pred eccchhhhccccCcccccccCCCccccc--CCCc------EEEccCCeEE---EEEEEcCCCCceEEEEECCeECccCCC
Confidence 200 01111100 0011 1122333334 455566899999999999765543321
Q ss_pred -hhhh----cccccchhhhhhhHHHhhc
Q psy10160 282 -DKKR----RSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 282 -~~~~----~grth~q~a~~~t~g~~~~ 304 (558)
.... .....+..+.....|.|..
T Consensus 164 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 191 (212)
T 2r15_A 164 CNLKFEAGRTAYFTINGVSTADSGKYGL 191 (212)
T ss_dssp EEEEEETTTEEEEEESSCCGGGCEEEEE
T ss_pred EEEEEcCCCEEEEEEcCcchHHCeEEEE
Confidence 1111 1244555566666665544
|
| >1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-11 Score=107.09 Aligned_cols=89 Identities=16% Similarity=0.301 Sum_probs=70.4
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCCCeEEEEE---------CCEEeccCCceEEEcc----CCeEEEccCCCCCCeEEE
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPIPQVFWYK---------DGQVIENDGVHYRITE----SNRLHINQANATDSGEYR 199 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~---------~g~~l~~~~~~~~~~~----~~sL~I~~v~~~D~G~Y~ 199 (558)
...+....+.+|+.++|.|.+.+.|.|.+.|++ ++..+. ..++.... +.+|.|.+++.+|+|.|+
T Consensus 42 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~--~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~ 119 (145)
T 1z9m_A 42 QPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALR--DNRIQLVTSTPHELSISISNVALADEGEYT 119 (145)
T ss_dssp CCBCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSC--CTTEEEEEECSSEEEEEECSCCGGGCEEEE
T ss_pred ecCCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecc--cCCEEEecCCCCeEEEEECCCChhhCEEEE
Confidence 456677889999999999999999999999994 333332 23444332 458999999999999999
Q ss_pred EEEEeCCceeeEEEEEEEeccCCCC
Q psy10160 200 CVASNSYTSDENAVTIRVEGIFIHP 224 (558)
Q Consensus 200 C~a~N~~G~~~~~~~l~V~~~~~~p 224 (558)
|.+.|. |.....+.|.|..+|.+|
T Consensus 120 C~~~n~-~~~~~~~~L~V~~~P~~P 143 (145)
T 1z9m_A 120 CSIFTM-PVRTAKSLVTVLGIPQKP 143 (145)
T ss_dssp EEECSS-SCEEEEEEEEEECCCC--
T ss_pred EEEEcC-CCceEEEEEEEEeCCCCC
Confidence 999999 988999999998766444
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-10 Score=106.49 Aligned_cols=119 Identities=15% Similarity=0.230 Sum_probs=81.1
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCCCccCCCCccccCceeEEeccCCCCCCcEEEEeCCcccC
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPSEKVADPNAIDYGTILSSAFPSESASPVVTQTTTTTTEA 90 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~~~~~~~~~v~~~~~~~~~~~~~~p~p~v~W~~~~~~~~ 90 (558)
.+..|.|.+++.+|+|.|.|++.|..+... +..|+|..+|...
T Consensus 57 ~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV~~~P~~~------------------------------------ 100 (210)
T 1gsm_A 57 GRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQL------------------------------------ 100 (210)
T ss_dssp SEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCSEE------------------------------------
T ss_pred CccEEEECccCcccCceEEEEEEeCCCceEEEEEEEEEecCCCc------------------------------------
Confidence 456899999999999999999999887653 5666666554321
Q ss_pred CCCceeeccccceeeceeEEeeccceeeEEeeeceeeeCcEEEecCCceEeeCCCcEEEEeEeecc-CC----CeEEEEE
Q psy10160 91 TSPHVYAALTHCVPWSNVCLFGARSGYLKETQNGGYLVPVKVNITLETQVFGVGSDISIPCDVDGY-PI----PQVFWYK 165 (558)
Q Consensus 91 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P~----p~i~W~~ 165 (558)
.+.+. .+.+|+.+ |.|.+.|. |. |+|.|+|
T Consensus 101 ------------------------------------------~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk 135 (210)
T 1gsm_A 101 ------------------------------------------TVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLV 135 (210)
T ss_dssp ------------------------------------------EEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEE
T ss_pred ------------------------------------------EEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEE
Confidence 11121 45678888 99999985 74 4899999
Q ss_pred CCEEeccCCc---eEEE----c---cC------CeEEEccCCCCCCeEEEEEEEeCCceeeE
Q psy10160 166 DGQVIENDGV---HYRI----T---ES------NRLHINQANATDSGEYRCVASNSYTSDEN 211 (558)
Q Consensus 166 ~g~~l~~~~~---~~~~----~---~~------~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~ 211 (558)
++.++..... .... . .. ++|.+.....+|.+.|+|.|.+..-....
T Consensus 136 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~~~ 197 (210)
T 1gsm_A 136 GGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLEL 197 (210)
T ss_dssp TTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTEEE
T ss_pred CCEEcccccccccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCCcc
Confidence 9999864320 1110 0 11 13444456666778999999997654433
|
| >3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L* | Back alignment and structure |
|---|
Probab=99.24 E-value=9.3e-12 Score=114.78 Aligned_cols=132 Identities=18% Similarity=0.194 Sum_probs=84.3
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEec---c--------CCceEEE---ccCCeEEEccCCCCCCe
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVIE---N--------DGVHYRI---TESNRLHINQANATDSG 196 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l~---~--------~~~~~~~---~~~~sL~I~~v~~~D~G 196 (558)
..++ ...+.+|+.++|.|.+.|.|.|.+.|+|. +.... . ...++.+ ..+.+|.|.+++.+|+|
T Consensus 5 ~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 83 (213)
T 3mj8_L 5 TQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEA 83 (213)
T ss_dssp BCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred EeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCE
Confidence 3445 67789999999999999999999999982 21110 0 1224442 22347999999999999
Q ss_pred EEEEEEEeCCc---eeeEEEEEEEeccC-CCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCC-CC-Cccccc
Q psy10160 197 EYRCVASNSYT---SDENAVTIRVEGIF-IHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQ-LP-SYGPHI 270 (558)
Q Consensus 197 ~Y~C~a~N~~G---~~~~~~~l~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~-~~-~~~~w~ 270 (558)
.|+|.+.|..| .....+.|.|...+ .+|.+...+. ...... +......|.+.|. |+ +.+.|+
T Consensus 84 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~---------~~~~~~---g~~v~l~C~~~g~~p~~~~v~W~ 151 (213)
T 3mj8_L 84 DYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPP---------SSEELK---TNQATLVCMINGFYPADVAVTWE 151 (213)
T ss_dssp EEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECC---------CHHHHT---TTEEEEEEEEEEEBSSCCEEEEE
T ss_pred EEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCC---------Cccccc---CCcEEEEEEeeceeCCCeEEEEE
Confidence 99999999998 44566778886433 2232221110 000112 2333345555564 33 389999
Q ss_pred chhhhhh
Q psy10160 271 KRAVEAE 277 (558)
Q Consensus 271 ~~~l~~~ 277 (558)
+++..+.
T Consensus 152 k~g~~l~ 158 (213)
T 3mj8_L 152 ADGTPIT 158 (213)
T ss_dssp ETTEEEC
T ss_pred cCCcccC
Confidence 9976554
|
| >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.2e-12 Score=119.50 Aligned_cols=138 Identities=16% Similarity=0.170 Sum_probs=87.5
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccC-----CCeEEEEECC--EEe-----------ccCCceEEEccC---CeEEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYP-----IPQVFWYKDG--QVI-----------ENDGVHYRITES---NRLHI 187 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P-----~p~i~W~~~g--~~l-----------~~~~~~~~~~~~---~sL~I 187 (558)
++.+...+....+.+|+.++|.|.+.|.| .|.+.|+|++ ..+ .....++.+... .+|.|
T Consensus 38 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I 117 (254)
T 2c1o_A 38 ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKI 117 (254)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEE
Confidence 56667778888999999999999999998 4899999843 221 111235554432 27999
Q ss_pred ccCCCCCCeEEEEEEEeCCcee-eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCC-
Q psy10160 188 NQANATDSGEYRCVASNSYTSD-ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPS- 265 (558)
Q Consensus 188 ~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~- 265 (558)
.+++.+|+|.|+|.|.|..+.. .....+.|.....+|.+...+.. . ....+ ......|.+.|.+++
T Consensus 118 ~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~--~-------~~~~g---~~v~l~C~~~g~~p~~ 185 (254)
T 2c1o_A 118 SRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPS--S-------EQLTS---GGASVVCFLNNFYPKD 185 (254)
T ss_dssp SSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCC--H-------HHHHT---TEEEEEEEEEEEBSSC
T ss_pred CcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCC--h-------hhccC---CcEEEEEEEecccCCC
Confidence 9999999999999999987643 23346677543333332211100 0 00111 233455656564444
Q ss_pred -cccccchhhhhhh
Q psy10160 266 -YGPHIKRAVEAEA 278 (558)
Q Consensus 266 -~~~w~~~~l~~~~ 278 (558)
.+.|++++.....
T Consensus 186 ~~v~W~k~g~~l~~ 199 (254)
T 2c1o_A 186 INVKWKIDGSERQN 199 (254)
T ss_dssp CEEEEEESSSEECT
T ss_pred cEEEEEECCCcccC
Confidence 4899999765543
|
| >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3.6e-12 Score=117.25 Aligned_cols=67 Identities=18% Similarity=0.361 Sum_probs=47.5
Q ss_pred eCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCC-ceEEEccCC------eEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 142 GVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDG-VHYRITESN------RLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 142 ~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~-~~~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
.+|+.+.|.|.+.|. |.| .+.|+|+|..+.... .++....++ .|.|.....+|.|.|+|.|.|....
T Consensus 122 ~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~ 197 (207)
T 2vol_A 122 MAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 197 (207)
T ss_dssp GSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred hcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence 368999999999995 543 899999999875321 112223344 3556556667899999999998643
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=114.23 Aligned_cols=123 Identities=19% Similarity=0.265 Sum_probs=83.6
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCC-----eEEEEECCEEecc--C------------CceEEEccC------CeEEEcc
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIP-----QVFWYKDGQVIEN--D------------GVHYRITES------NRLHINQ 189 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p-----~i~W~~~g~~l~~--~------------~~~~~~~~~------~sL~I~~ 189 (558)
++....+.+|+.+.|.|.+.|.|.+ .+.|+|++..+.. . ..+..+..+ .+|.|.+
T Consensus 7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~ 86 (222)
T 3sbw_C 7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITD 86 (222)
T ss_dssp SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESS
T ss_pred CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcC
Confidence 3455678899999999999888844 7999997633210 0 123333322 3799999
Q ss_pred CCCCCCeEEEEEEEeCCceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccc
Q psy10160 190 ANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPH 269 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w 269 (558)
++.+|+|.|+|.+.| .|.....+.|.|..++..|... +. ..... +......|.+.|.|+|.+.|
T Consensus 87 v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~---------~~---~~~~~---g~~v~L~C~~~g~P~p~i~W 150 (222)
T 3sbw_C 87 VKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQR---------IL---VVDPV---TSEHELTCQAEGYPKAEVIW 150 (222)
T ss_dssp CCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEE---------EE---EEETT---TTEEEEEEEEEEBSCCEEEE
T ss_pred cccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCce---------ee---eeecC---CCcEEEEEEecCCCCCeEEE
Confidence 999999999999999 6777788899997554222111 00 01122 23333455566899999999
Q ss_pred cchh
Q psy10160 270 IKRA 273 (558)
Q Consensus 270 ~~~~ 273 (558)
+++.
T Consensus 151 ~~~~ 154 (222)
T 3sbw_C 151 TSSD 154 (222)
T ss_dssp EETT
T ss_pred EECC
Confidence 9984
|
| >3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ... | Back alignment and structure |
|---|
Probab=99.23 E-value=8.8e-12 Score=116.83 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=50.7
Q ss_pred eEeeCCCcEEEEeEeeccCCC--eEEEEECCEEecc--------CCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 139 QVFGVGSDISIPCDVDGYPIP--QVFWYKDGQVIEN--------DGVHYRITESNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~P~p--~i~W~~~g~~l~~--------~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
..+..|+.+.|.|.+.|.+++ .+.|++++..+.. .+..|.. .+.|.|.....+| |.|+|.|.|..+.
T Consensus 142 ~~~~~g~~v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~~-g~ytC~v~~~~~~ 218 (232)
T 3qhz_H 142 SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL--SSVVTVPSSSLGT-QTYICNVNHKPSN 218 (232)
T ss_dssp ------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEE--EEEEEEEGGGGGT-CCCEEEEEEGGGT
T ss_pred ccccCCCcEEEEEEEeeEeCCCeEEEEEECCEecceeeccceeCCCCCEEE--EEEEEEchhhcCC-CEEEEEEEeCCCC
Confidence 345579999999999986543 4779998864321 1112221 1368899998889 9999999999887
Q ss_pred eeEEEEEEE
Q psy10160 209 DENAVTIRV 217 (558)
Q Consensus 209 ~~~~~~l~V 217 (558)
......|.+
T Consensus 219 ~~~~~~l~~ 227 (232)
T 3qhz_H 219 TKVDKRVEP 227 (232)
T ss_dssp EEEEEECCC
T ss_pred ccEEEEeCC
Confidence 776666655
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-11 Score=118.94 Aligned_cols=197 Identities=14% Similarity=0.093 Sum_probs=56.8
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCCcceE--EEEEEEEeCCCCccCCCC--ccccC-ceeEEeccCCC-CCC--cEEEEeCC
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGLGRAV--SWTVTLQALPSEKVADPN--AIDYG-TILSSAFPSES-ASP--VVTQTTTT 86 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~--s~~l~V~~~p~~~~~~~~--~v~~~-~~~~~~~~~~~-p~p--~v~W~~~~ 86 (558)
.|.|.+++.+ |.|+|++.. .|... ++.+.|..+|..+...+. .+..| ...+.|.+.+. |.+ .|+|++++
T Consensus 51 ~~~l~~v~~~--~~y~C~~~~-~~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~ 127 (291)
T 1mq8_A 51 VYELSNVQED--SQPMCYSNC-PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGE 127 (291)
T ss_dssp EEEEESCCSC--CCCEEEEEC-SSCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSS
T ss_pred EEEEEecccC--CeEEEEEEc-CCccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECC
Confidence 5899998853 469999964 44444 445566566665554443 35555 55578887776 433 48999998
Q ss_pred cccCCCCcee---eccc------cceeeceeEEeecccee----e----EEeeeceeeeCcEE--EecCCceEeeCCCcE
Q psy10160 87 TTEATSPHVY---AALT------HCVPWSNVCLFGARSGY----L----KETQNGGYLVPVKV--NITLETQVFGVGSDI 147 (558)
Q Consensus 87 ~~~~~~~~~~---~g~~------~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~p~~~--~~~~~~~~v~~G~~v 147 (558)
..+....... .... ...--.+.|.+.+.... + .....+.+.++|.. .+.. +..+++|+.+
T Consensus 128 ~~l~~~~~~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~-p~~l~eG~~v 206 (291)
T 1mq8_A 128 KELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS-PRVLEVDTQG 206 (291)
T ss_dssp SEEEEEECCBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-----------------------
T ss_pred EEeecccCCCCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecC-CcCccCCCeE
Confidence 6654222100 0000 00011345666554221 1 11123334344321 1111 2357899999
Q ss_pred EEEeEeeccCCC---eEEEEECCEEeccCCceEEEccCCeEEEccC---CCCC--CeEEEEEEEeCCceeeEEEEEEEec
Q psy10160 148 SIPCDVDGYPIP---QVFWYKDGQVIENDGVHYRITESNRLHINQA---NATD--SGEYRCVASNSYTSDENAVTIRVEG 219 (558)
Q Consensus 148 ~L~C~~~g~P~p---~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v---~~~D--~G~Y~C~a~N~~G~~~~~~~l~V~~ 219 (558)
+|.|.+.|+|++ .+.|+++|..+.... ...+..+.+... ..+| .+.|+|.|.|.....+....|.|..
T Consensus 207 ~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~ 282 (291)
T 1mq8_A 207 TVVCSLDGLFPVSEAQVHLALGDQRLNPTV----TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS 282 (291)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEcCCCCCCcccEEEEEECCEecCcee----eecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEc
Confidence 999999998665 489999998886421 112234444433 3444 5677788888655566777777754
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.23 E-value=9.3e-12 Score=124.12 Aligned_cols=81 Identities=15% Similarity=0.207 Sum_probs=57.6
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeecc-CC-CeEEEEECCEEecc--------CCceEEEccCCeEEEccCCCCCCeEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGY-PI-PQVFWYKDGQVIEN--------DGVHYRITESNRLHINQANATDSGEY 198 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P~-p~i~W~~~g~~l~~--------~~~~~~~~~~~sL~I~~v~~~D~G~Y 198 (558)
+|.+...+....+.+|+.+.|.|.+.|. |. |.+.|+|++..+.. .+.+|.. .+.|.|.++..+| |.|
T Consensus 120 ~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d-G~Y 196 (344)
T 1za6_B 120 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL--SSVVTVPSSSLGT-QTY 196 (344)
T ss_dssp CCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEE--EEEEEEETTHHHH-BCE
T ss_pred CCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCCeECCCCCEEE--EEEEEEcHHHcCC-CcE
Confidence 4455444333446799999999999997 65 68999999875321 1112222 2379999998888 999
Q ss_pred EEEEEeCCceeeEE
Q psy10160 199 RCVASNSYTSDENA 212 (558)
Q Consensus 199 ~C~a~N~~G~~~~~ 212 (558)
+|.|.|..|.....
T Consensus 197 ~C~a~n~~~~~~~~ 210 (344)
T 1za6_B 197 ICNVNHKPSNTKVD 210 (344)
T ss_dssp EEEEEEGGGTEEEE
T ss_pred EEEEEeCCCCccce
Confidence 99999998875433
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-11 Score=108.56 Aligned_cols=148 Identities=15% Similarity=0.154 Sum_probs=95.1
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCC-eEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
.+|.+...+....+.+|+.+.|.|.+.+.|.| .+.|++++..+.. .+++|.|.+++.+|+|.|+|.+.|..
T Consensus 3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~~~~ 74 (176)
T 1f2q_A 3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE--------TNSSLNIVNAKFEDSGEYKCQHQQVN 74 (176)
T ss_dssp -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC--------CSSEEEECSCCGGGCEEEEEECTTSS
T ss_pred CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC--------CceEEEEeccceecCEEEEEEcCCcc
Confidence 46677777888889999999999999999887 5999999988753 35689999999999999999999976
Q ss_pred ceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhhhhhhc
Q psy10160 207 TSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAADKKRR 286 (558)
Q Consensus 207 G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~~~~~~ 286 (558)
++. .+.|.|..++ ..... ....+..|......|... .+.|.+.+.|++++....... ..
T Consensus 75 ~s~--~~~l~V~~~~---~~~~~----------~~~~~~~g~~~~l~C~~~--~~~p~~~~~W~~~g~~~~~~~----~~ 133 (176)
T 1f2q_A 75 ESE--PVYLEVFSDW---LLLQA----------SAEVVMEGQPLFLRCHGW--RNWDVYKVIYYKDGEALKYWY----EN 133 (176)
T ss_dssp CCC--CEEEEEECSS---EEEEE----------SCSEEETTSCEEEEEEEG--GGCCEEEEEEEETTEECCSCC----CS
T ss_pred ccc--cEEEEEeCcc---eeecC----------CcceeeCCCCEEEEEEec--CCCCceEEEEEECCEEEeeec----CC
Confidence 644 4556664211 11100 111223334445455431 357778999999875442111 12
Q ss_pred ccccchhhhhhhHHHhhc
Q psy10160 287 SRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 287 grth~q~a~~~t~g~~~~ 304 (558)
+..++..+.....|.|..
T Consensus 134 ~~L~i~~v~~~d~G~Y~C 151 (176)
T 1f2q_A 134 HNISITNATVEDSGTYYC 151 (176)
T ss_dssp SEEEESSCCGGGCEEEEE
T ss_pred CeEEECCCCcccCEEEEE
Confidence 334455555555565544
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A | Back alignment and structure |
|---|
Probab=99.22 E-value=9.1e-11 Score=109.27 Aligned_cols=125 Identities=17% Similarity=0.146 Sum_probs=80.7
Q ss_pred CCceEeeCCCcEEEEeEeeccCCC---eEEEEECCEEe-----------ccC-----CceEEEc------cCCeEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIP---QVFWYKDGQVI-----------END-----GVHYRIT------ESNRLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p---~i~W~~~g~~l-----------~~~-----~~~~~~~------~~~sL~I~~v 190 (558)
..+..+.+|++++|.|.+.+.|.| .|.|+|++... ... ..+.... .+.+|.|.++
T Consensus 11 ~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v 90 (226)
T 4f80_A 11 SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNV 90 (226)
T ss_dssp SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSC
T ss_pred CCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeC
Confidence 445778999999999999987766 59999876321 110 0122211 1247999999
Q ss_pred CCCCCeEEEEEEEeCCceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCC-CCCCcccc
Q psy10160 191 NATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAG-QLPSYGPH 269 (558)
Q Consensus 191 ~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g-~~~~~~~w 269 (558)
+.+|+|.|+|.|.|..|.....+.+.+..+...+. ..... .. +......|.+.| .|+|.+.|
T Consensus 91 ~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~--------~~~~~------~~---g~~v~l~c~~~g~~P~p~i~W 153 (226)
T 4f80_A 91 TASDSGKYLCYFQDGDFYEKALVELKVAALGSDLH--------VDVKG------YK---DGGIHLECRSTGWYPQPQIQW 153 (226)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCCE--------EEEEE------EE---TTEEEEEEEEEEEBSCCEEEE
T ss_pred chHHCeeEEEEEECCCcEEEEEEEEeeccceeccc--------ceeee------cc---CCceeeEEEeccCCCCCEEEE
Confidence 99999999999999998887777766643221110 00111 11 223334455546 59999999
Q ss_pred cchhhhhh
Q psy10160 270 IKRAVEAE 277 (558)
Q Consensus 270 ~~~~l~~~ 277 (558)
+++.....
T Consensus 154 ~k~~~~~~ 161 (226)
T 4f80_A 154 SNNKGENI 161 (226)
T ss_dssp ECTTSCBC
T ss_pred EECCceEc
Confidence 98754443
|
| >3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-11 Score=113.19 Aligned_cols=135 Identities=12% Similarity=0.187 Sum_probs=85.2
Q ss_pred EEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECC---EE--e--------ccCCceEEEcc---CCeEEEccCCCCC
Q psy10160 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG---QV--I--------ENDGVHYRITE---SNRLHINQANATD 194 (558)
Q Consensus 131 ~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g---~~--l--------~~~~~~~~~~~---~~sL~I~~v~~~D 194 (558)
.+...+....+.+|+.+.|.|.+.+.|.|.+.|+|.+ .. + .....++.+.. +.+|.|.+++.+|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 82 (213)
T 3r06_A 3 QMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESED 82 (213)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred eeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCccc
Confidence 3445567788999999999999999999999999832 10 1 01123454432 3389999999999
Q ss_pred CeEEEEEEEeCCcee-eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCC--Ccccccc
Q psy10160 195 SGEYRCVASNSYTSD-ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLP--SYGPHIK 271 (558)
Q Consensus 195 ~G~Y~C~a~N~~G~~-~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~--~~~~w~~ 271 (558)
+|.|+|.+.|..+.. .....|.|..+..+|.+...+. . .....+ ......|.+.|.++ +.+.|++
T Consensus 83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~--~-------~~~~~~---~~v~l~C~~~g~~p~~~~v~W~k 150 (213)
T 3r06_A 83 IGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPP--S-------SEQLGT---GSATLVCFVNNFYPKDINVKWKV 150 (213)
T ss_dssp CSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECC--C-------HHHHTT---TEEEEEEEEEEEBSSCEEEEEEE
T ss_pred CEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCC--C-------ceecCC---CCcEEEEEEeeecCCceEEEEEE
Confidence 999999999986533 3446677754443343321110 0 000111 12334555556554 3789999
Q ss_pred hhhhhh
Q psy10160 272 RAVEAE 277 (558)
Q Consensus 272 ~~l~~~ 277 (558)
++....
T Consensus 151 ~g~~l~ 156 (213)
T 3r06_A 151 DGSEKR 156 (213)
T ss_dssp TTEEEC
T ss_pred CCcccC
Confidence 976543
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-11 Score=98.38 Aligned_cols=79 Identities=27% Similarity=0.566 Sum_probs=64.2
Q ss_pred CceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCC---eEEEccCCCCCCeEEEEEEEeCCceeeEEE
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRCVASNSYTSDENAV 213 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 213 (558)
....+.+|+.+.|.|.+. .|.|.+.|+|++..+..+. ++.+..++ +|.|.+++.+|+|.|+|.|.| ...++
T Consensus 19 ~~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~----~~~~~ 92 (102)
T 2eo1_A 19 REVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSS-KVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGG----QQLSF 92 (102)
T ss_dssp EEEEEETTCCEEECCBCS-CSSSCCEEEETTEECCCCS-SEEEEEETTEEEEEETTCCTTTCSCEEEEETT----EECCE
T ss_pred ccEEEeCCCcEEEEEEec-CCCCceEEEECCEECCCCC-CEEEEEcCCEEEEEECCCCcccCEEEEEEcCC----CcEEE
Confidence 345788999999999998 8999999999999987654 55554443 799999999999999999954 45567
Q ss_pred EEEEeccC
Q psy10160 214 TIRVEGIF 221 (558)
Q Consensus 214 ~l~V~~~~ 221 (558)
.|.|..++
T Consensus 93 ~l~V~~p~ 100 (102)
T 2eo1_A 93 RLQVAGQC 100 (102)
T ss_dssp EEEEESCC
T ss_pred EEEEeCCC
Confidence 88886554
|
| >3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ... | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-11 Score=114.35 Aligned_cols=134 Identities=16% Similarity=0.156 Sum_probs=85.7
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCCCeEEEEECC--EEe----------c-cCCceEEEccC---CeEEEccCCCCCCe
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG--QVI----------E-NDGVHYRITES---NRLHINQANATDSG 196 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g--~~l----------~-~~~~~~~~~~~---~sL~I~~v~~~D~G 196 (558)
...+....+.+|+.+.|.|.+.|.|.|.+.|+|++ ..+ . ....++.+... .+|.|.+++.+|+|
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 84 (213)
T 3d9a_L 5 TQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFG 84 (213)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred EeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCE
Confidence 34466778899999999999999999999999853 211 0 11135544422 38999999999999
Q ss_pred EEEEEEEeCCceee-EEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCC-CCCC-cccccchh
Q psy10160 197 EYRCVASNSYTSDE-NAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAG-QLPS-YGPHIKRA 273 (558)
Q Consensus 197 ~Y~C~a~N~~G~~~-~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g-~~~~-~~~w~~~~ 273 (558)
.|+|.+.|..|... ....|.|.....+|.+...+.. ..... +......|.+.| .|++ .+.|++++
T Consensus 85 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~---------~~~~~---g~~~~l~C~~~g~~p~~~~v~W~k~g 152 (213)
T 3d9a_L 85 MYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPS---------SEQLT---SGGASVVCFLNNFYPKDINVKWKIDG 152 (213)
T ss_dssp EEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCC---------HHHHH---TTEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred EEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCC---------hhhcC---CCcEEEEEEEeeecCCceEEEEEcCC
Confidence 99999999987643 3456777544333332211100 00011 223445565555 4554 79999997
Q ss_pred hhhhh
Q psy10160 274 VEAEA 278 (558)
Q Consensus 274 l~~~~ 278 (558)
.....
T Consensus 153 ~~~~~ 157 (213)
T 3d9a_L 153 SERQN 157 (213)
T ss_dssp EEECT
T ss_pred CcCcc
Confidence 65543
|
| >2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=4e-11 Score=115.76 Aligned_cols=71 Identities=14% Similarity=0.325 Sum_probs=50.0
Q ss_pred eEeeCCCcEEEEeEeecc-CC-CeEEEEECCEEeccCCceEE------E--ccCC------eEEEccCCCCC-CeEEEEE
Q psy10160 139 QVFGVGSDISIPCDVDGY-PI-PQVFWYKDGQVIENDGVHYR------I--TESN------RLHINQANATD-SGEYRCV 201 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~~~------~--~~~~------sL~I~~v~~~D-~G~Y~C~ 201 (558)
..+.+|+.+.|.|.+.|. |. |.+.|+|+|..+.... ... + ..++ .|.|.+...+| .|.|+|.
T Consensus 160 ~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~-~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~ 238 (279)
T 2wbj_D 160 AEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGV-STDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQ 238 (279)
T ss_dssp HHHHHHSCCEEEEEEEEEBSSCEEEEEEETTEECCTTE-EECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEE
T ss_pred ccccCCCceEEEEEEeeEcCCCcEEEEEECCEECCCCc-ccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEE
Confidence 345579999999999997 43 6899999998876431 110 0 0222 47887777654 7789999
Q ss_pred EEeCCceee
Q psy10160 202 ASNSYTSDE 210 (558)
Q Consensus 202 a~N~~G~~~ 210 (558)
|.|......
T Consensus 239 v~n~~~~~~ 247 (279)
T 2wbj_D 239 VQFYGLSEN 247 (279)
T ss_dssp EEECCBCTT
T ss_pred EEeCCCCCC
Confidence 999865543
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-11 Score=112.60 Aligned_cols=133 Identities=12% Similarity=0.148 Sum_probs=86.4
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCc--eEE-EccCCeEEEccCCCCCCeEEEEEEEe
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV--HYR-ITESNRLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~--~~~-~~~~~sL~I~~v~~~D~G~Y~C~a~N 204 (558)
.+|.+...+. ..+.+|+.++|.|.+.+ |.|.+.|+|+|..+..... ++. ...+++|.|.+++.+|+|.|+|.+.|
T Consensus 7 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~ 84 (201)
T 1nkr_A 7 RKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSV 84 (201)
T ss_dssp CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred CCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEec
Confidence 3566666665 67889999999999975 7889999999876542110 111 11245799999999999999999987
Q ss_pred CC-----ceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhh
Q psy10160 205 SY-----TSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA 276 (558)
Q Consensus 205 ~~-----G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~ 276 (558)
.. ...+..+.|.|.+.+..|.+...+ . ..+..|.... ..|.+.+ +++.+.|++++...
T Consensus 85 ~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p---~-------~~v~~G~~v~---L~C~~~~-~~~~~~w~k~g~~~ 147 (201)
T 1nkr_A 85 THSPYQVSAPSDPLDIVIIGLYEKPSLSAQP---G-------PTVLAGENVT---LSCSSRS-SYDMYHLSREGEAH 147 (201)
T ss_dssp TTBTTCCCCCCCCEEEEEECSSCCCEEEEES---C-------SEECTTCEEE---EEEEESS-CCSEEEEEETTCSS
T ss_pred CCCCccccCCCCCEEEEeeccCCCCceecCC---C-------CccCCCCeEE---EEEeCCC-CCceEEEEECCccc
Confidence 53 233566788887654333332211 1 1223333344 4454534 56788999987544
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-10 Score=107.23 Aligned_cols=126 Identities=19% Similarity=0.336 Sum_probs=84.9
Q ss_pred cCCceEeeCCCcEEEEeEeecc-------CCCeEEEEECCEE------ec----------cCCceEEEcc-----CCeEE
Q psy10160 135 TLETQVFGVGSDISIPCDVDGY-------PIPQVFWYKDGQV------IE----------NDGVHYRITE-----SNRLH 186 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~-------P~p~i~W~~~g~~------l~----------~~~~~~~~~~-----~~sL~ 186 (558)
.+....+.+|+.+.|.|.+.+. |.+.+.|+|++.. +. ....++.+.. +.+|.
T Consensus 6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~ 85 (214)
T 2zg1_A 6 VQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLS 85 (214)
T ss_dssp CCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEE
T ss_pred CCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEE
Confidence 4566788999999999999864 5778999998652 10 1123555543 34799
Q ss_pred EccCCCCCCeEEEEEEEeCCceee----EEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCC-
Q psy10160 187 INQANATDSGEYRCVASNSYTSDE----NAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAG- 261 (558)
Q Consensus 187 I~~v~~~D~G~Y~C~a~N~~G~~~----~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g- 261 (558)
|.+++.+|+|.|.|.+.|..+... ..+.|.|.+++..|.+.... . +..|.... ..|.+.+
T Consensus 86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~-----~-------~~~G~~v~---L~C~~~~~ 150 (214)
T 2zg1_A 86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE-----P-------LESGRPTR---LSCSLPGS 150 (214)
T ss_dssp ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--C-----C-------CCTTCCEE---EEEECTTC
T ss_pred EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCc-----c-------ccCCCeEE---EEEEeccC
Confidence 999999999999999999874332 46788887665444432110 0 12222333 4555544
Q ss_pred ---CCCCcccccchhhh
Q psy10160 262 ---QLPSYGPHIKRAVE 275 (558)
Q Consensus 262 ---~~~~~~~w~~~~l~ 275 (558)
.|+|.+.|++++..
T Consensus 151 ~~~~p~p~v~W~~~~~~ 167 (214)
T 2zg1_A 151 CEAGPPLTFSWTGNALS 167 (214)
T ss_dssp CSCSSCCEEEEESSTTS
T ss_pred CCCCCCceEEEeCCCCc
Confidence 48899999999754
|
| >2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.19 E-value=8.1e-12 Score=115.91 Aligned_cols=67 Identities=19% Similarity=0.311 Sum_probs=47.1
Q ss_pred eCCCcEEEEeEeec-cCCC-eEEEEECCEEeccCC-ceEEEccCCe------EEEccCCCCCCeEEEEEEEeCCce
Q psy10160 142 GVGSDISIPCDVDG-YPIP-QVFWYKDGQVIENDG-VHYRITESNR------LHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 142 ~~G~~v~L~C~~~g-~P~p-~i~W~~~g~~l~~~~-~~~~~~~~~s------L~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
.+|+.+.|.|.+.| +|.| .|.|+|+|..+.... .++....+++ |.|.....+|.|.|+|.|.|....
T Consensus 130 ~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~ 205 (218)
T 2rgs_A 130 LSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK 205 (218)
T ss_dssp TTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred hcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence 36999999999999 6776 899999999874321 1122234443 444444455799999999998654
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-11 Score=110.90 Aligned_cols=138 Identities=12% Similarity=0.048 Sum_probs=89.3
Q ss_pred ceEeeCCCcEEEEeEeeccCCCeEEEEECCEEecc-------------CCceEEEcc------CCeEEEccCCCCCCeEE
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN-------------DGVHYRITE------SNRLHINQANATDSGEY 198 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~-------------~~~~~~~~~------~~sL~I~~v~~~D~G~Y 198 (558)
...+.+|+.+.|.|.+.+.|.|.+.|+|++..+.. ...++.... ..+|.|.+++.+|+|.|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 83 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 83 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence 45678999999999999999999999999853211 012333332 33599999999999999
Q ss_pred EEEEEeCCceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhh
Q psy10160 199 RCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEA 278 (558)
Q Consensus 199 ~C~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~ 278 (558)
+|.+.|..| .+.|.|.....++. . .+ .. +......|.+.+.|+|.+.|++++...
T Consensus 84 ~C~~~~~~~----~~~l~V~~~~~~~~---------~-~v------~~---g~~~~l~C~~~~~p~~~v~W~~~~~~~-- 138 (184)
T 2ny1_B 84 ICEVEDQKE----EVQLLVFGLTANSD---------T-HL------LQ---GQSLTLTLESPPGSSPSVQCRSPRGKN-- 138 (184)
T ss_dssp EEEETTEEE----EEEEEEEEEEESSC---------S-EE------ET---TCCEEEEEECCTTCCCEEEEECTTSCE--
T ss_pred EEEEEcCCC----cEEEEEEEecCCCC---------c-ee------ec---CCCEEEEEEcCCCCCCEEEEEeCCCcc--
Confidence 999998765 45566653221111 1 11 22 223335566667899999999885432
Q ss_pred hhhhhhhcccccchhhhhhhHHHhhc
Q psy10160 279 AAADKKRRSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 279 ~~~~~~~~grth~q~a~~~t~g~~~~ 304 (558)
....+..++..+.....|.|..
T Consensus 139 ----~~~~~~L~i~~v~~~d~G~Y~C 160 (184)
T 2ny1_B 139 ----IQGGKTLSVSQLELQDSGTWTC 160 (184)
T ss_dssp ----EEESSEEEESSCCGGGCEEEEE
T ss_pred ----ccCceEEEEecCCcCCCeEEEE
Confidence 1123444555555566665554
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.3e-11 Score=125.87 Aligned_cols=87 Identities=20% Similarity=0.424 Sum_probs=73.4
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEecc--CCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN--DGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~--~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.. ...++.+..+++|.|.+++.+|+|.|+|.|.|..|..
T Consensus 388 ~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~ 467 (477)
T 2id5_A 388 RDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGND 467 (477)
T ss_dssp SCCSCEEEEEETTCCEEECCCEEEESCCEEEEECTTSCBC-------CEECTTSCEEESSCCSTTCEEEEEEEEETTEEE
T ss_pred cccccccEEEeCCCeEEEEEeccccCCCEEEEEECCccccccCCCceEEeCCCCEEEEeeCChHHCEEEEEEEEeCCCcE
Confidence 33445677889999999999999999999999999987753 2346667778899999999999999999999999999
Q ss_pred eEEEEEEEe
Q psy10160 210 ENAVTIRVE 218 (558)
Q Consensus 210 ~~~~~l~V~ 218 (558)
+..+.|.|.
T Consensus 468 ~~~~~l~V~ 476 (477)
T 2id5_A 468 SMPAHLHVR 476 (477)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEe
Confidence 999999885
|
| >3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L* | Back alignment and structure |
|---|
Probab=99.18 E-value=3e-11 Score=113.20 Aligned_cols=135 Identities=13% Similarity=0.168 Sum_probs=86.2
Q ss_pred EEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECC--E-----------EeccCCceEEEc---cCCeEEEccCCCCC
Q psy10160 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG--Q-----------VIENDGVHYRIT---ESNRLHINQANATD 194 (558)
Q Consensus 131 ~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g--~-----------~l~~~~~~~~~~---~~~sL~I~~v~~~D 194 (558)
.+...+....+.+|+.+.|.|.+.+.|.|.+.|+|.+ . .......++... .+.+|.|.+++.+|
T Consensus 26 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 105 (237)
T 3sob_L 26 QMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPED 105 (237)
T ss_dssp CEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred eEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhh
Confidence 4455567788999999999999999999999999832 1 111112355443 33479999999999
Q ss_pred CeEEEEEEEeCCcee-eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCC-C-CCcccccc
Q psy10160 195 SGEYRCVASNSYTSD-ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQ-L-PSYGPHIK 271 (558)
Q Consensus 195 ~G~Y~C~a~N~~G~~-~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~-~-~~~~~w~~ 271 (558)
+|.|+|.+.|..+.. .....|.|.....+|.+...+. . ..... +......|.+.+. | .+.+.|++
T Consensus 106 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~--~-------~~~~~---g~~v~l~C~~~~~~p~~~~v~W~k 173 (237)
T 3sob_L 106 FATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPP--S-------DEQLK---SGTASVVCLLNNFYPREAKVQWKV 173 (237)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECC--C-------HHHHH---HTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred CeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCC--C-------hhhcc---CCceEEEEEEcccCCCceEEEEEE
Confidence 999999999987643 3445677755443333321110 0 00011 2223355655563 3 48999999
Q ss_pred hhhhhh
Q psy10160 272 RAVEAE 277 (558)
Q Consensus 272 ~~l~~~ 277 (558)
++....
T Consensus 174 ~g~~~~ 179 (237)
T 3sob_L 174 DNALQS 179 (237)
T ss_dssp TTEECC
T ss_pred CCCCCC
Confidence 876544
|
| >1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.5e-11 Score=111.64 Aligned_cols=130 Identities=14% Similarity=0.142 Sum_probs=83.1
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCeEEEEECC--EEe-----------ccCCceEEEccC---CeEEEccCCCCCCeEEE
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDG--QVI-----------ENDGVHYRITES---NRLHINQANATDSGEYR 199 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g--~~l-----------~~~~~~~~~~~~---~sL~I~~v~~~D~G~Y~ 199 (558)
|....+.+|+.+.|.|.+.|.|.|.+.|+|++ ..+ .....++.+... .+|.|.+++.+|+|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 86 (210)
T 1lk3_L 7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF 86 (210)
T ss_dssp CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence 66778899999999999999999999999842 221 011235544322 38999999999999999
Q ss_pred EEEEeCCceee-EEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCC-CCC-cccccchhhhh
Q psy10160 200 CVASNSYTSDE-NAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQ-LPS-YGPHIKRAVEA 276 (558)
Q Consensus 200 C~a~N~~G~~~-~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~-~~~-~~~w~~~~l~~ 276 (558)
|.+.|..+... ....|.|.....+|.+...+. .. .... +......|.+.|. |++ .+.|++++...
T Consensus 87 C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~--~~-------~~~~---g~~v~l~C~~~g~~p~~~~v~W~k~g~~~ 154 (210)
T 1lk3_L 87 CQQSWNGPLTFGAGTKLELKRADAAPTVSIFPP--ST-------EQLA---TGGASVVCLMNNFYPRDISVKWKIDGTER 154 (210)
T ss_dssp EEECSSSSCEECCCEEEEECCCCBCCEEEEECC--CH-------HHHT---TTEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred EEEEcCCCceeCCCEEEEEcCCCcCCeEEEECC--ch-------hhcc---CCcEEEEEEEEeEeCCceEEEEEeCCccC
Confidence 99999887542 345677754333333221110 00 0011 2233355555553 443 78999997654
Q ss_pred h
Q psy10160 277 E 277 (558)
Q Consensus 277 ~ 277 (558)
.
T Consensus 155 ~ 155 (210)
T 1lk3_L 155 R 155 (210)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2.8e-11 Score=111.89 Aligned_cols=133 Identities=11% Similarity=0.180 Sum_probs=82.7
Q ss_pred EEecCCceEeeCCCcEEEEeEeecc-CCCeEEEEECC--EE-------------ecc--CCceEEEc---cCCeEEEccC
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGY-PIPQVFWYKDG--QV-------------IEN--DGVHYRIT---ESNRLHINQA 190 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~-P~p~i~W~~~g--~~-------------l~~--~~~~~~~~---~~~sL~I~~v 190 (558)
+...+ ...+.+|+.+.|.|.+.+. |.|.+.|+|.. .. ... ...++.+. .+.+|.|.++
T Consensus 4 v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 82 (218)
T 3s96_B 4 LTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNI 82 (218)
T ss_dssp EECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSC
T ss_pred EEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccC
Confidence 33445 7778999999999999999 99999999832 10 000 01244432 2347999999
Q ss_pred CCCCCeEEEEEEEeCCc-----eeeEEEEEEEeccC-CCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCC-CC
Q psy10160 191 NATDSGEYRCVASNSYT-----SDENAVTIRVEGIF-IHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAG-QL 263 (558)
Q Consensus 191 ~~~D~G~Y~C~a~N~~G-----~~~~~~~l~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g-~~ 263 (558)
+.+|+|.|.|.+.|..| .....+.|.|...+ .+|.+...+ . ......+ ......|.+.| .|
T Consensus 83 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~---~------~~~~~~~---~~v~L~C~~~g~~p 150 (218)
T 3s96_B 83 QPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFP---P------SSEELKE---NKATLVCLISNFSP 150 (218)
T ss_dssp CGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEEC---C------CHHHHHT---TEEEEEEEEEEEBS
T ss_pred CcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeC---C------CcccccC---CcEEEEEEECcccC
Confidence 99999999999999887 33455678886433 222221100 0 0001111 22334555556 46
Q ss_pred CC-cccccchhhhhh
Q psy10160 264 PS-YGPHIKRAVEAE 277 (558)
Q Consensus 264 ~~-~~~w~~~~l~~~ 277 (558)
++ .+.|++++....
T Consensus 151 ~~~~v~W~k~g~~l~ 165 (218)
T 3s96_B 151 SGVTVAWKANGTPIT 165 (218)
T ss_dssp SCCEEEEEETTEEC-
T ss_pred CCeEEEEEECCEECc
Confidence 66 799999876554
|
| >3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ... | Back alignment and structure |
|---|
Probab=99.18 E-value=2.7e-11 Score=114.12 Aligned_cols=77 Identities=14% Similarity=0.283 Sum_probs=52.6
Q ss_pred ceEeeCCCcEEEEeEeec-cCCC-eEEEEECCEEecc--------CCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 138 TQVFGVGSDISIPCDVDG-YPIP-QVFWYKDGQVIEN--------DGVHYRITESNRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g-~P~p-~i~W~~~g~~l~~--------~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
...+..|+.+.|.|.+.| .|.| .+.|++++..+.. .+..|.+ .+.|.|.....+| |.|+|.|.|..+
T Consensus 149 ~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~~-~~ytC~v~h~~~ 225 (239)
T 3tv3_H 149 SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL--SSVVTVPSSSLGT-QTYICNVNHKPS 225 (239)
T ss_dssp CCCC--TTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEE--EEEEEEEGGGTTT-CCCEEEEEEGGG
T ss_pred ChhhccCCcEEEEEEEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEE--EEEEEEchhhcCC-CEEEEEEEECCC
Confidence 334557999999999998 4544 3889998864321 1112222 1368899988889 999999999987
Q ss_pred eeeEEEEEEE
Q psy10160 208 SDENAVTIRV 217 (558)
Q Consensus 208 ~~~~~~~l~V 217 (558)
.......|.+
T Consensus 226 ~~~~~~~l~~ 235 (239)
T 3tv3_H 226 NTKVDKRVEP 235 (239)
T ss_dssp TEEEEEECCC
T ss_pred CceEEEEecc
Confidence 7666555554
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.8e-11 Score=122.59 Aligned_cols=94 Identities=18% Similarity=0.333 Sum_probs=76.1
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEe-ccC--CceEEEccCCeEEEccCCCCCCeEEEEEEEeC
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVI-END--GVHYRITESNRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l-~~~--~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
+|.+...+....+.+|+.++|.|.+ +.|.|.+.|++++..+ ... ..++.+..+++|.|.+++.+|+|.|+|.|.|.
T Consensus 341 ~P~i~~~~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 419 (440)
T 3zyj_A 341 APVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNS 419 (440)
T ss_dssp CCCEEECCCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCCSSEEECTTCCEEESSCCSTTCEEEEEEEECS
T ss_pred CCcccccccceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccCCCceEEEccCCeEEEccCChhhCEEEEEEEEcC
Confidence 5667777888899999999999999 5799999999955433 322 23677777889999999999999999999999
Q ss_pred CceeeEEEEEEEeccCCC
Q psy10160 206 YTSDENAVTIRVEGIFIH 223 (558)
Q Consensus 206 ~G~~~~~~~l~V~~~~~~ 223 (558)
.|..+.++.+.|.+.+.+
T Consensus 420 ~G~~~~~~~~~v~~~~~~ 437 (440)
T 3zyj_A 420 VGNTTASATLNVTGTHHH 437 (440)
T ss_dssp SCEEEEEEEEEEC-----
T ss_pred CCcEEEEEEEEEeccccc
Confidence 999999999999876543
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3.8e-11 Score=106.29 Aligned_cols=147 Identities=15% Similarity=0.163 Sum_probs=94.0
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccC-CCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYP-IPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P-~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
.|.+...+....+.+|+.+.|.|.+.+.| .+.+.|+|++..+... ...+.|.+++.+|+|.|+|.+.|..+
T Consensus 4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~--------~~~~~~~~~~~~d~G~Y~C~~~~~~~ 75 (170)
T 3ry4_A 4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH--------TQPSYRFKANNNDSGEYTCQTGQTSL 75 (170)
T ss_dssp BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC--------CSSEEEEECCGGGCEEEEEEETTSBC
T ss_pred CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC--------ccceEEEecccccCeEEEEEEeCCCc
Confidence 45566677777889999999999999987 6789999999988653 34577889999999999999998654
Q ss_pred eeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhhhhhhcc
Q psy10160 208 SDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAADKKRRS 287 (558)
Q Consensus 208 ~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~~~~~~g 287 (558)
. ..+.|.|..++ .....+ . ..+..|......|... .+.|.+.+.|++++....... ..+
T Consensus 76 s--~~~~l~v~~~~---~~~~~~----~------~~~~~g~~~~l~C~~~--~~~p~~~~~W~~~g~~~~~~~----~~~ 134 (170)
T 3ry4_A 76 S--DPVHLTVLFEW---LVLQTP----H------LEFQEGETIMLRCHSW--KDKPLVKVTFFQNGKSQKFSH----LDP 134 (170)
T ss_dssp C--CCEEEEEECCS---EEEECS----C------SEECTTCCEEEEEEEG--GGCCEEEEEEEETTEEEEEES----SCC
T ss_pred e--EeEEEEEECCc---eEecCC----C------ceeecCCeEEEEEECC--CCCCCceEEEEECCeEccccC----CCC
Confidence 4 45666775432 111111 0 1122333344444432 356779999999865432111 122
Q ss_pred cccchhhhhhhHHHhhc
Q psy10160 288 RRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 288 rth~q~a~~~t~g~~~~ 304 (558)
...+..+.....|.|..
T Consensus 135 ~L~i~~v~~~d~G~Y~C 151 (170)
T 3ry4_A 135 TFSIPQANHSHSGDYHC 151 (170)
T ss_dssp EEEESSCCGGGCEEEEE
T ss_pred eEEEEeccccCCEEEEE
Confidence 33444455555555544
|
| >2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=95.04 Aligned_cols=86 Identities=19% Similarity=0.111 Sum_probs=66.4
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEe------------------ccCCceEEEccCCeEEEccCCCCCC
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVI------------------ENDGVHYRITESNRLHINQANATDS 195 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l------------------~~~~~~~~~~~~~sL~I~~v~~~D~ 195 (558)
+.+.+..+.+|+++.|.|.....+.+.+.|+|..... +...+|..+..+++|.|.+|+.+|+
T Consensus 5 i~~~p~~~~~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ngSL~I~nvt~~D~ 84 (111)
T 2qsq_A 5 IESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDA 84 (111)
T ss_dssp EEEESSEEETTSCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTSCEEECSCCGGGC
T ss_pred EEeccceeccCCCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCCcEEEccCcccCC
Confidence 3444457889999999998644445579999975321 1123578888899999999999999
Q ss_pred eEEEEEEEeCCce-eeEEEEEEEec
Q psy10160 196 GEYRCVASNSYTS-DENAVTIRVEG 219 (558)
Q Consensus 196 G~Y~C~a~N~~G~-~~~~~~l~V~~ 219 (558)
|.|+|.+.|..+. .+..+.|.|..
T Consensus 85 G~Ytc~v~~~~~~~~~~~~~L~V~~ 109 (111)
T 2qsq_A 85 GFYTLHVIKSDLVNEEATGQFRVYP 109 (111)
T ss_dssp EEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred eEEEEEEEeCCCcEEEEEEEEEEec
Confidence 9999999999774 57888888864
|
| >1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ... | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-10 Score=110.27 Aligned_cols=73 Identities=14% Similarity=0.307 Sum_probs=50.3
Q ss_pred CceEeeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCCceEE------E--ccCC------eEEEccCCCC-CCeEEE
Q psy10160 137 ETQVFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGVHYR------I--TESN------RLHINQANAT-DSGEYR 199 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~~~~------~--~~~~------sL~I~~v~~~-D~G~Y~ 199 (558)
....+.+|+.+.|.|.+.|. |.| .+.|+|+|..+.... ... + ..++ .|.|.....+ |.|.|+
T Consensus 131 ~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~~~~-~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~yt 209 (252)
T 1oga_E 131 SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGV-STDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFR 209 (252)
T ss_dssp CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSE-EECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEE
T ss_pred ChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECCCCc-ccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEE
Confidence 33345579999999999986 654 899999998876432 110 0 1222 3777766554 678999
Q ss_pred EEEEeCCceee
Q psy10160 200 CVASNSYTSDE 210 (558)
Q Consensus 200 C~a~N~~G~~~ 210 (558)
|.+.|......
T Consensus 210 C~v~~~~l~~~ 220 (252)
T 1oga_E 210 CQVQFYGLSEN 220 (252)
T ss_dssp EEEEECCBCTT
T ss_pred EEEEcCCCCCC
Confidence 99999865543
|
| >3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-10 Score=110.83 Aligned_cols=65 Identities=18% Similarity=0.432 Sum_probs=48.0
Q ss_pred EeeCCCcEEEEeEeec-cCCC-eEEEEECCEEeccCC---------------ceEEEccCCeEEEccCCCCC-CeEEEEE
Q psy10160 140 VFGVGSDISIPCDVDG-YPIP-QVFWYKDGQVIENDG---------------VHYRITESNRLHINQANATD-SGEYRCV 201 (558)
Q Consensus 140 ~v~~G~~v~L~C~~~g-~P~p-~i~W~~~g~~l~~~~---------------~~~~~~~~~sL~I~~v~~~D-~G~Y~C~ 201 (558)
.+..|+.++|.|.+.| +|.| .+.|+|+|..+.... ..|.+ ...|.|.....+| .|.|+|.
T Consensus 135 ~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~--~s~l~i~~~~~~d~~~~ytC~ 212 (253)
T 3to4_D 135 EISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYAL--SSRLRVSATFWQNPRNHFRCQ 212 (253)
T ss_dssp HHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTCTTCCEEE--EEEEEEEHHHHTCTTCEEEEE
T ss_pred hcccCCceEEEEEEceEECCcEEEEEEECCEECCCceecccccccccccCCCCCEEE--EEEEEECHHHhccCCCEEEEE
Confidence 3445789999999999 6767 799999999886421 11211 1257788777777 7799999
Q ss_pred EEeCC
Q psy10160 202 ASNSY 206 (558)
Q Consensus 202 a~N~~ 206 (558)
|.|..
T Consensus 213 v~h~~ 217 (253)
T 3to4_D 213 VQFYG 217 (253)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99964
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.8e-11 Score=110.81 Aligned_cols=156 Identities=12% Similarity=-0.029 Sum_probs=91.7
Q ss_pred CCceEeeCC--CcEEEEeEeeccCCCeEEEEEC---CEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceee
Q psy10160 136 LETQVFGVG--SDISIPCDVDGYPIPQVFWYKD---GQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDE 210 (558)
Q Consensus 136 ~~~~~v~~G--~~v~L~C~~~g~P~p~i~W~~~---g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~ 210 (558)
+....+.+| +.+.|.|.+.+ |.|.+.|+++ +..+.. +.++....++.|.|.+++.+|+|.|+|.|.|..+...
T Consensus 14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~-~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~ 91 (213)
T 2x1w_L 14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPD-GNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQ 91 (213)
T ss_dssp CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCC-SSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEE
T ss_pred ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccC-CCcccccCCccEEEccCChhcCceEEEEEEECCeeEE
Confidence 456778899 99999999987 7899999884 555544 3455555667899999999999999999999544432
Q ss_pred -EEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCC--CCcccccchhhhhhhh-----hhh
Q psy10160 211 -NAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQL--PSYGPHIKRAVEAEAA-----AAD 282 (558)
Q Consensus 211 -~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~--~~~~~w~~~~l~~~~~-----~~~ 282 (558)
..+.|.|... .+|.... .....+ .+..|.... ..|.+.|.| ++.+.|++++...... ..+
T Consensus 92 s~~~~l~v~~~-~~p~~~~---~~~~~~-----~v~~G~~v~---L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~ 159 (213)
T 2x1w_L 92 SIMYIVVVVGY-RIYDVVL---SPSHGI-----ELSVGEKLV---LNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 159 (213)
T ss_dssp CCCEEEEECBC-CEEEEEE---ESCSCE-----EEETTCCEE---EEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEEC
T ss_pred EEEEEEEEeCC-cccceEE---cCCCCe-----EEcCCCCEE---EEEEEECCCCCceEEEEEecCCccceEEEeccccc
Confidence 2367777431 1111110 011110 123333344 455555544 4568999887652211 000
Q ss_pred -------hhhcccccchhhhhhhHHHhhcc
Q psy10160 283 -------KKRRSRRSLSVVNKWSLRQAFTT 305 (558)
Q Consensus 283 -------~~~~grth~q~a~~~t~g~~~~~ 305 (558)
....+..++..++....|.|...
T Consensus 160 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 189 (213)
T 2x1w_L 160 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCA 189 (213)
T ss_dssp CCSSCSCEEEEEEEEESSCCGGGCEEEEEE
T ss_pred cccCccceeeeEEEEECCCCcccCEEEEEE
Confidence 11122355566667767766653
|
| >1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ... | Back alignment and structure |
|---|
Probab=99.15 E-value=8.6e-11 Score=110.50 Aligned_cols=71 Identities=11% Similarity=0.270 Sum_probs=47.0
Q ss_pred CceEeeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCCc---eEEEccCCe------EEEccCCCCC-CeEEEEEEEe
Q psy10160 137 ETQVFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGV---HYRITESNR------LHINQANATD-SGEYRCVASN 204 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~---~~~~~~~~s------L~I~~v~~~D-~G~Y~C~a~N 204 (558)
....+.+|+.+.|.|.+.|. |.| .+.|+|+|..+..... ......+++ |.|.....+| .|.|+|.|.|
T Consensus 129 ~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~ 208 (238)
T 1bec_A 129 SKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQF 208 (238)
T ss_dssp CSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEE
T ss_pred ChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEc
Confidence 33445689999999999996 655 8999999998865321 111123343 3343333334 6789999999
Q ss_pred CCc
Q psy10160 205 SYT 207 (558)
Q Consensus 205 ~~G 207 (558)
...
T Consensus 209 ~~l 211 (238)
T 1bec_A 209 HGL 211 (238)
T ss_dssp CCC
T ss_pred CCC
Confidence 743
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-10 Score=104.29 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=82.6
Q ss_pred CceEeeCCCcEEEEeEeec-cCCCeEEEEEC-CEEec-----------cCC--ceEEE-ccCCeEEEccCCCCCCeEEEE
Q psy10160 137 ETQVFGVGSDISIPCDVDG-YPIPQVFWYKD-GQVIE-----------NDG--VHYRI-TESNRLHINQANATDSGEYRC 200 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g-~P~p~i~W~~~-g~~l~-----------~~~--~~~~~-~~~~sL~I~~v~~~D~G~Y~C 200 (558)
....+.+|+.++|.|.+.+ .+.+.|.|+|. +..+. ... .|+.+ ..+++|.|.+++.+|+|.|+|
T Consensus 7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C 86 (180)
T 2dru_A 7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM 86 (180)
T ss_dssp CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEE
T ss_pred ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEE
Confidence 4567889999999999855 34788999994 32221 011 36666 567899999999999999999
Q ss_pred EEEeCCceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccC-CCCCCCcccccchhhhh
Q psy10160 201 VASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTR-AGQLPSYGPHIKRAVEA 276 (558)
Q Consensus 201 ~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~-~g~~~~~~~w~~~~l~~ 276 (558)
.+.+.. .....+.|.|.+++..|.+. ..+ .. +...|.+ .| |+|.+.|++++...
T Consensus 87 ~v~~~~-~~~~~~~L~V~~~~~~P~i~-----------~~~------~~---v~L~C~~~~g-p~p~i~W~~~~~~l 141 (180)
T 2dru_A 87 RMLHET-EDQWKITMEVYEMVSKPMIY-----------WEC------SN---ATLTCEVLEG-TDVELKLYQGKEHL 141 (180)
T ss_dssp EEESSS-EEEEEEEEEEECCCCCCEEE-----------EEG------GG---TEEEEECSSC-TTCEEEEEETTEEE
T ss_pred EEEcCC-eEEEEEEEEEECCCCCCEEE-----------ecC------CC---EEEEEEeCCC-CCCEEEEEECCeEC
Confidence 998877 66788889997654222211 111 11 3355666 46 89999999987543
|
| >1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-10 Score=109.94 Aligned_cols=130 Identities=18% Similarity=0.255 Sum_probs=82.8
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccC----CCeEEEEECC--EE---ec--------cCCceEEEccC---CeEEEccCC
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYP----IPQVFWYKDG--QV---IE--------NDGVHYRITES---NRLHINQAN 191 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P----~p~i~W~~~g--~~---l~--------~~~~~~~~~~~---~sL~I~~v~ 191 (558)
+...+....+.+|+.++|.|.+.+.| .|.+.|+|+. .. +. ....++.+... .+|.|.+++
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 83 (240)
T 1moe_A 4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVE 83 (240)
T ss_dssp EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred eEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCC
Confidence 44556778899999999999999998 7889999852 21 11 01235544332 279999999
Q ss_pred CCCCeEEEEEEEeCCce-eeEEEEEEEeccCC--CCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCC--CCc
Q psy10160 192 ATDSGEYRCVASNSYTS-DENAVTIRVEGIFI--HPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQL--PSY 266 (558)
Q Consensus 192 ~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~--~~~ 266 (558)
.+|+|.|.|.+.|..+. ....+.|.|..++. +|... ... .. ...+..|.... ..|.+.+.| .+.
T Consensus 84 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~-~~~-~~------~~~v~~G~~v~---L~C~~~g~p~~~~~ 152 (240)
T 1moe_A 84 ADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQ-LQQ-SG------AELVEPGASVK---LSCTASGFNIKDTY 152 (240)
T ss_dssp GGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCE-EEE-CC------CEEECTTCCEE---EEEEEESSCGGGSC
T ss_pred hhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEE-EeC-CC------ceEEeCCCcEE---EEEEEcCccCCCCE
Confidence 99999999999998765 34556777765432 11111 000 11 11123333344 455555665 468
Q ss_pred ccccch
Q psy10160 267 GPHIKR 272 (558)
Q Consensus 267 ~~w~~~ 272 (558)
+.|+++
T Consensus 153 v~W~k~ 158 (240)
T 1moe_A 153 MHWVKQ 158 (240)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999996
|
| >4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E | Back alignment and structure |
|---|
Probab=99.14 E-value=4.2e-11 Score=113.11 Aligned_cols=135 Identities=19% Similarity=0.215 Sum_probs=84.4
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccCCCeEEEEE----------------CCEEeccC--CceEEEcc----CCeEEEcc
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYK----------------DGQVIEND--GVHYRITE----SNRLHINQ 189 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~----------------~g~~l~~~--~~~~~~~~----~~sL~I~~ 189 (558)
+...+....+.+|+.+.|.|.+.+.|.+.+.|+| ++...... ..++.+.. +.+|.|.+
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~ 83 (246)
T 4dzb_B 4 VSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTS 83 (246)
T ss_dssp EEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECS
T ss_pred cEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECC
Confidence 4455667888999999999999999999999998 32222221 13555432 23799999
Q ss_pred CCCCCCeEEEEEEEeCCc----eeeEEEEEEEec---cCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCC
Q psy10160 190 ANATDSGEYRCVASNSYT----SDENAVTIRVEG---IFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQ 262 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N~~G----~~~~~~~l~V~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~ 262 (558)
++.+|+|.|.|.+.|..+ .......|.|.. ...+|.+. +..+.......+......|.+.|.
T Consensus 84 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~-----------~~~~~~~~~~~g~~v~L~C~~~g~ 152 (246)
T 4dzb_B 84 AHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVA-----------VFEPSEAEISHTQKATLVCLATGF 152 (246)
T ss_dssp CCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEE-----------EECCCHHHHHHHSEEEEEEEEEEE
T ss_pred CCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceE-----------eecCCchhccCCCcEEEEEEEccC
Confidence 999999999999998754 223445677764 11222211 111100000012333455556576
Q ss_pred CCC--cccccchhhhhh
Q psy10160 263 LPS--YGPHIKRAVEAE 277 (558)
Q Consensus 263 ~~~--~~~w~~~~l~~~ 277 (558)
+++ .+.|++++..+.
T Consensus 153 ~p~~~~v~W~k~g~~l~ 169 (246)
T 4dzb_B 153 YPDHVELSWWVNGKEVH 169 (246)
T ss_dssp BSSCEEEEEEETTEEEC
T ss_pred cCCceEEEEEECCEECC
Confidence 665 799999875543
|
| >1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-10 Score=109.54 Aligned_cols=133 Identities=16% Similarity=0.178 Sum_probs=79.8
Q ss_pred CceEeeCCCcEEEEeEeeccC--CCeEEEEEC--CEE---ec------------cCCceEEEcc-----CCeEEEccCCC
Q psy10160 137 ETQVFGVGSDISIPCDVDGYP--IPQVFWYKD--GQV---IE------------NDGVHYRITE-----SNRLHINQANA 192 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~--g~~---l~------------~~~~~~~~~~-----~~sL~I~~v~~ 192 (558)
....+.+|+.++|.|.+.|.| .|.+.|+|+ +.. +. ....|+.+.. ..+|.|.+++.
T Consensus 8 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 87 (257)
T 1f3r_B 8 GPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQT 87 (257)
T ss_dssp CCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCT
T ss_pred CCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCc
Confidence 445788999999999999986 688999985 211 10 0123555543 23899999999
Q ss_pred CCCeEEEEEEEeCCc-------ee--eEEEEEEEeccCCCCCCCCCCcc-ccceeEEec--eeeecccceeEEEEeccCC
Q psy10160 193 TDSGEYRCVASNSYT-------SD--ENAVTIRVEGIFIHPSCRDLPLF-ANCKLIVEG--RYCQHHYYSQFCCESCTRA 260 (558)
Q Consensus 193 ~D~G~Y~C~a~N~~G-------~~--~~~~~l~V~~~~~~p~~~~~~~~-~~~~~~~~~--~~~~~g~~~~~~c~~~~~~ 260 (558)
+|+|.|.|.|.|..| .. ...+.|.|...+..+.....+.. ....+.... ..+.. +....+.|.+.
T Consensus 88 ~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~---G~~v~L~C~~~ 164 (257)
T 1f3r_B 88 DDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASV---GDRVTLSCKGS 164 (257)
T ss_dssp TCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCT---TCCEEEEEECS
T ss_pred ccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcC---CCCEEEEEEEC
Confidence 999999999999865 11 23457777654311000000000 000000000 01222 34444666677
Q ss_pred CCCCCcccccch
Q psy10160 261 GQLPSYGPHIKR 272 (558)
Q Consensus 261 g~~~~~~~w~~~ 272 (558)
+.+++.+.|+++
T Consensus 165 ~~~~~~v~W~k~ 176 (257)
T 1f3r_B 165 QNINNYLAWYQQ 176 (257)
T ss_dssp SCCBTCEEEEEE
T ss_pred CcCCCcEEEEEE
Confidence 888899999994
|
| >4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=109.13 Aligned_cols=178 Identities=14% Similarity=0.162 Sum_probs=89.8
Q ss_pred EEEEEEEEeCCcceEEEEEEEEeCCCCccCCCCc---cc-cCceeEEeccCCCC----CCcEEEEeCCcccCCCCce---
Q psy10160 27 GAYTCQAYNGLGRAVSWTVTLQALPSEKVADPNA---ID-YGTILSSAFPSESA----SPVVTQTTTTTTEATSPHV--- 95 (558)
Q Consensus 27 G~Y~C~a~n~~g~~~s~~l~V~~~p~~~~~~~~~---v~-~~~~~~~~~~~~~p----~p~v~W~~~~~~~~~~~~~--- 95 (558)
|.|.|...|..+. .... .+...|...+.+|.. +. ++.+.+.|.+.+.+ ...|+|++++..+......
T Consensus 1 ~~~~~~~~~~~~~-c~~~-~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~ 78 (240)
T 4acp_A 1 GTKSCDKTHTCPP-CPAP-ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPRE 78 (240)
T ss_dssp ------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCE
T ss_pred CceeeeeeecCCC-CCcc-ccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccce
Confidence 7899999987663 2111 112234444444433 22 45778899988864 2369999998776432110
Q ss_pred --eecccc---cee---------eceeEEeecccee--eEEeee--ceeeeCcEEEecCCceEeeCCCcEEEEeEeec-c
Q psy10160 96 --YAALTH---CVP---------WSNVCLFGARSGY--LKETQN--GGYLVPVKVNITLETQVFGVGSDISIPCDVDG-Y 156 (558)
Q Consensus 96 --~~g~~~---~~~---------~~~~~~~~~~~~~--~~~~~~--~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g-~ 156 (558)
..+.|. .+. -.+.|.+.+.... ...... .....+|.+.+.+.......|+.+.|.|.+.| +
T Consensus 79 ~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~ 158 (240)
T 4acp_A 79 EQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFY 158 (240)
T ss_dssp EC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEB
T ss_pred ECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEe
Confidence 011111 111 1357777766542 221211 12345677766555443445999999999999 5
Q ss_pred CCC-eEEEEECCEEeccCC-ceEEEccCC------eEEEccCCCCCCeEEEEEEEeCC
Q psy10160 157 PIP-QVFWYKDGQVIENDG-VHYRITESN------RLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 157 P~p-~i~W~~~g~~l~~~~-~~~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
|.+ .+.|+|+|..+.... .......++ .|.|.....+|.|.|+|.+.|..
T Consensus 159 P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~ 216 (240)
T 4acp_A 159 PSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA 216 (240)
T ss_dssp SSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred CCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECC
Confidence 654 699999998864211 011112233 46666555568899999999975
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=7.5e-11 Score=111.52 Aligned_cols=125 Identities=15% Similarity=0.229 Sum_probs=82.1
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCCe-----EEEEECCEEecc----------------CCceEE----EccCCeEEEcc
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIPQ-----VFWYKDGQVIEN----------------DGVHYR----ITESNRLHINQ 189 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p~-----i~W~~~g~~l~~----------------~~~~~~----~~~~~sL~I~~ 189 (558)
.+....+.+|+.+.|.|.+.|.|.|. +.|+|++..... ...++. ...+.+|.|.+
T Consensus 9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~ 88 (248)
T 3pv7_A 9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG 88 (248)
T ss_dssp TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence 44566788999999999999999886 999996422110 000000 01123699999
Q ss_pred CCCCCCeEEEEEEEeCCceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCC-CCCC-cc
Q psy10160 190 ANATDSGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAG-QLPS-YG 267 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g-~~~~-~~ 267 (558)
++.+|+|.|+|.+.|..|.....+.|.|..+| .+...+ . .... .+.... ..|.+.| .|+| .+
T Consensus 89 v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P---~v~~~~---~-~~~~------~~~~~~---L~C~~~g~~P~pi~v 152 (248)
T 3pv7_A 89 IQLEEAGEYRCEVVVTPLKAQGTVQLEVVASP---ASRLLL---D-QVGM------KENEDK---YMCESSGFYPEAINI 152 (248)
T ss_dssp CCGGGCEEEEEEEEETTEEEEEEEEEEEEBCC---EEEEEC---C---------------CE---EEEEEEEEBSSCCEE
T ss_pred CCHHHCeEEEEEEEeCCccceeEEEEEEecCC---ceEEec---C-Cccc------cCCCcE---EEEEEccEECCCeEE
Confidence 99999999999999999988888999997533 221111 1 0111 111233 4555557 7888 89
Q ss_pred cccchhhh
Q psy10160 268 PHIKRAVE 275 (558)
Q Consensus 268 ~w~~~~l~ 275 (558)
.|++++..
T Consensus 153 ~W~k~g~~ 160 (248)
T 3pv7_A 153 TWEKQTQK 160 (248)
T ss_dssp EEEEECSS
T ss_pred EEEECCcc
Confidence 99999753
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-10 Score=112.94 Aligned_cols=145 Identities=12% Similarity=0.023 Sum_probs=83.7
Q ss_pred eEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceee-EEEEEEE
Q psy10160 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDE-NAVTIRV 217 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 217 (558)
..+.+|+.+.|.|.+. .|.|.+.|++.+....... .+ .....+. ..+|+|.|+|.|.|..+... ..+.|.|
T Consensus 105 ~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~-~~--~~~~~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v 176 (289)
T 3mjg_X 105 IFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPV-PY--DHQRGFS----GIFEDRSYICKTTIGDREVDSDAYYVYR 176 (289)
T ss_dssp EEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCC-CE--ETTTEEE----ECCCSSEEEEEEEETTEEEECCCEEEEE
T ss_pred EEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccce-ee--cCCcCee----eeccCcEEEEEEEeCCceeeeeeEEEEe
Confidence 5688999999999999 7889999998753222211 11 1111222 36799999999998877663 4466777
Q ss_pred eccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhh---hh------hhhccc
Q psy10160 218 EGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAA---AD------KKRRSR 288 (558)
Q Consensus 218 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~---~~------~~~~gr 288 (558)
... .+|.+...+ .... +..|.... ..|.+.|.|.|.+.|++++....... .. ....+.
T Consensus 177 ~~~-~~p~i~~~~---~~~~------v~~G~~v~---L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (289)
T 3mjg_X 177 LQV-SSINVSVNA---VQTV------VRQGENIT---LMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSI 243 (289)
T ss_dssp CCC-CCCCCEEEE---SCSE------EETTSCEE---EEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEE
T ss_pred cCC-CCCCcEEeC---Ccce------eEcCCCEE---EEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEE
Confidence 543 222222111 1111 22333344 45556689999999997654322111 00 112244
Q ss_pred ccchhhhhhhHHHhhc
Q psy10160 289 RSLSVVNKWSLRQAFT 304 (558)
Q Consensus 289 th~q~a~~~t~g~~~~ 304 (558)
.++..+.....|.|..
T Consensus 244 L~I~~v~~~D~G~Y~C 259 (289)
T 3mjg_X 244 LHIPSAELEDSGTYTC 259 (289)
T ss_dssp EEESSCCSSCCEEEEE
T ss_pred EEEcccChhhCcEEEE
Confidence 5556666666666554
|
| >1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H | Back alignment and structure |
|---|
Probab=99.13 E-value=2.3e-10 Score=105.94 Aligned_cols=129 Identities=17% Similarity=0.263 Sum_probs=82.9
Q ss_pred cCCceEeeCCCcEEEEeEeeccC--CCeEEEEEC--CEEec----------------cCCceEEEcc-----CCeEEEcc
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYP--IPQVFWYKD--GQVIE----------------NDGVHYRITE-----SNRLHINQ 189 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~--g~~l~----------------~~~~~~~~~~-----~~sL~I~~ 189 (558)
.+....+.+|+.+.|.|.+.|.| .|.+.|+|+ +..+. ....|+.+.. +.+|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (219)
T 1c1e_H 6 QSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN 85 (219)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred CCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence 34566789999999999999876 678999986 33221 0123555432 24899999
Q ss_pred CCCCCCeEEEEEEEeCCce----eeEEEEEEEeccC-CCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCC-CC
Q psy10160 190 ANATDSGEYRCVASNSYTS----DENAVTIRVEGIF-IHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAG-QL 263 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N~~G~----~~~~~~l~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g-~~ 263 (558)
++.+|+|.|.|.+.|..+. ....+.|.|.... .+|.+...+ . ...+.. +......|.+.| .|
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~--~-------~~~~~~---g~~v~L~C~~~g~~P 153 (219)
T 1c1e_H 86 LKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLA--P-------GSAAQT---NSMVTLGCLVKGYFP 153 (219)
T ss_dssp CCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEEC--C-------CSSSCC---SSEEEEEEEEEEEBS
T ss_pred CCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEec--C-------cccccc---CCeEEEEEEcccccC
Confidence 9999999999999998742 2235677775421 122211100 0 001112 334445666667 78
Q ss_pred CC-cccccchhhh
Q psy10160 264 PS-YGPHIKRAVE 275 (558)
Q Consensus 264 ~~-~~~w~~~~l~ 275 (558)
.| .+.|++++..
T Consensus 154 ~p~~v~W~~~g~~ 166 (219)
T 1c1e_H 154 EPVTVTWNSGSLS 166 (219)
T ss_dssp SCCEEEEGGGTBC
T ss_pred CCeEEEEEeCCcc
Confidence 88 9999999754
|
| >2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-10 Score=108.88 Aligned_cols=133 Identities=15% Similarity=0.192 Sum_probs=78.7
Q ss_pred CceEeeCCCcEEEEeEeeccC--CCeEEEEECC--EEe----------------ccCCceEEEcc-----CCeEEEccCC
Q psy10160 137 ETQVFGVGSDISIPCDVDGYP--IPQVFWYKDG--QVI----------------ENDGVHYRITE-----SNRLHINQAN 191 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~g--~~l----------------~~~~~~~~~~~-----~~sL~I~~v~ 191 (558)
....+.+|+.++|.|.+.|.| .|.+.|+|+. ..+ .....++.+.. ..+|.|.+++
T Consensus 10 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 89 (247)
T 2ghw_B 10 GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLR 89 (247)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCC
Confidence 457789999999999999987 6789999842 111 01123555443 2379999999
Q ss_pred CCCCeEEEEEEEeCCcee--eEEEEEEEeccCCCCCCCCC-CccccceeEEe--ceeeecccceeEEEEeccCCCCCCCc
Q psy10160 192 ATDSGEYRCVASNSYTSD--ENAVTIRVEGIFIHPSCRDL-PLFANCKLIVE--GRYCQHHYYSQFCCESCTRAGQLPSY 266 (558)
Q Consensus 192 ~~D~G~Y~C~a~N~~G~~--~~~~~l~V~~~~~~p~~~~~-~~~~~~~~~~~--~~~~~~g~~~~~~c~~~~~~g~~~~~ 266 (558)
.+|+|.|.|.+.|..+.. ...+.|.|..++........ .......+... ...+..|.... ..|.+.+.+++.
T Consensus 90 ~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~---L~C~~~~~~~~~ 166 (247)
T 2ghw_B 90 AEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERAT---LSCRASQSVRSN 166 (247)
T ss_dssp GGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEE---EEEEESSCCTTC
T ss_pred HHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEE---EEEEeCCCccce
Confidence 999999999999984332 33457777644210000000 00000001110 01123333344 555666888899
Q ss_pred ccccch
Q psy10160 267 GPHIKR 272 (558)
Q Consensus 267 ~~w~~~ 272 (558)
+.|+++
T Consensus 167 v~W~k~ 172 (247)
T 2ghw_B 167 LAWYQQ 172 (247)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999993
|
| >3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A | Back alignment and structure |
|---|
Probab=99.12 E-value=5.3e-11 Score=127.54 Aligned_cols=127 Identities=17% Similarity=0.192 Sum_probs=90.9
Q ss_pred ceEeeCCCcEEEEeEe-eccCCCeEEEEECCEEeccC-----------CceEEEccCCeEEEccCCCCCCeEEEEEEEeC
Q psy10160 138 TQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIEND-----------GVHYRITESNRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~-~g~P~p~i~W~~~g~~l~~~-----------~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
...+.+|+.++|.|.+ .+.|.|.+.|+|++..+... ..++.+..+++|.|.+++.+|+|.|+|.+.|.
T Consensus 375 ~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~ 454 (581)
T 3o3u_N 375 NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNR 454 (581)
T ss_dssp EEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEECT
T ss_pred ccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEcC
Confidence 4567899999999999 88999999999986532110 22555667789999999999999999999999
Q ss_pred Ccee-eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCC-CCCCcccccchhhhhh
Q psy10160 206 YTSD-ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAG-QLPSYGPHIKRAVEAE 277 (558)
Q Consensus 206 ~G~~-~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g-~~~~~~~w~~~~l~~~ 277 (558)
.|.. ...+.|.|..++..|.+..... ....+ .......|.+.+ .|+|.+.|++++..+.
T Consensus 455 ~~~~~~~~~~l~V~~~~~~p~i~~~~~-----~~~~~--------~~~~~l~C~~~~~~P~~~i~W~~~g~~l~ 515 (581)
T 3o3u_N 455 NGKETKSNYRVRVYQIPGKPEIVDSAS-----ELTAG--------VPNKVGTCVSEGSYPAGTLSWHLDGKPLV 515 (581)
T ss_dssp TSCEEEEEEEEEEEBCCCCCEEESCCS-----EECTT--------SCEEEEEEEEEEEBSCCEEEEEETTEECC
T ss_pred CCceeEEEEEEEEEcCCCCCEEEcCCc-----ccccC--------CceeEEEEECCCCCCCCeEEEEECCEECC
Confidence 9988 7889999977654443322111 11111 112223455556 5899999999976554
|
| >3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ... | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-10 Score=108.43 Aligned_cols=74 Identities=15% Similarity=0.316 Sum_probs=52.4
Q ss_pred EeeCCCcEEEEeEeecc-C-CCeEEEEECCEEeccC----------CceEEEccCCeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 140 VFGVGSDISIPCDVDGY-P-IPQVFWYKDGQVIEND----------GVHYRITESNRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 140 ~v~~G~~v~L~C~~~g~-P-~p~i~W~~~g~~l~~~----------~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
.+.+|+.+.|.|.+.+. | .+.+.| ++..+... +..|.. .+.|.|.....+| |.|+|.+.|..+
T Consensus 139 ~~~~g~~v~L~C~~~~~~P~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~~-~~ytC~v~h~~~ 213 (230)
T 3n9g_H 139 KSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSL--SSVVTVPSSSLGT-QTYICNVNHKPS 213 (230)
T ss_dssp CCCTTCEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEE--EEEEEEESTTBTT-BCCEEEEEEGGG
T ss_pred cccCCCCEEEEEEEEeEECCCEEEEE--CCcccCCCeEeCCceECCCCCEEE--EEEEEECHHHcCC-CeEEEEEEECCC
Confidence 34689999999999985 4 345899 55444221 112221 1368999999999 999999999988
Q ss_pred eeeEEEEEEEe
Q psy10160 208 SDENAVTIRVE 218 (558)
Q Consensus 208 ~~~~~~~l~V~ 218 (558)
.......+.|.
T Consensus 214 ~~~~~~~~~v~ 224 (230)
T 3n9g_H 214 NTKVDKRVEPK 224 (230)
T ss_dssp TEEEEEECCCC
T ss_pred CcceEEEccCC
Confidence 77776666664
|
| >3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=110.43 Aligned_cols=85 Identities=14% Similarity=0.204 Sum_probs=53.0
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeecc-C-CCeEEEEECCEEecc--------CCceEEEccCCeEEEccCCCCCCeEEE
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDGY-P-IPQVFWYKDGQVIEN--------DGVHYRITESNRLHINQANATDSGEYR 199 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g~-P-~p~i~W~~~g~~l~~--------~~~~~~~~~~~sL~I~~v~~~D~G~Y~ 199 (558)
|.+...+....+..|+.+.|.|.+.|. | .+.+.|++++..+.. .+..|.+ .+.|.|.....+| |.|+
T Consensus 142 P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~~-~~yt 218 (248)
T 3u2s_H 142 PSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL--SSVVTVPSSSLGT-QTYI 218 (248)
T ss_dssp CEEEEECCC------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEE--EEEEEEEGGGBTT-BCCE
T ss_pred CEEEEeCCCccccCCCcEEEEEEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEE--EEEEEEChhhcCC-CeEE
Confidence 334333333345579999999999984 4 346899998864321 1122222 1368888888888 9999
Q ss_pred EEEEeCCceeeEEEEEEE
Q psy10160 200 CVASNSYTSDENAVTIRV 217 (558)
Q Consensus 200 C~a~N~~G~~~~~~~l~V 217 (558)
|.+.|..+.......+.+
T Consensus 219 C~v~h~~~~~~~~~~l~~ 236 (248)
T 3u2s_H 219 CNVNHKPSNTKVDKKVEP 236 (248)
T ss_dssp EEEEEGGGTEEEEEECCC
T ss_pred EEEEECCCCcceEEEEcc
Confidence 999999877765555544
|
| >3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L | Back alignment and structure |
|---|
Probab=99.11 E-value=8.8e-11 Score=111.43 Aligned_cols=136 Identities=16% Similarity=0.145 Sum_probs=84.8
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeeccC-----CCeEEEEECC--EEe-----------ccCCceEEEccC---CeEEEc
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDGYP-----IPQVFWYKDG--QVI-----------ENDGVHYRITES---NRLHIN 188 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g~P-----~p~i~W~~~g--~~l-----------~~~~~~~~~~~~---~sL~I~ 188 (558)
+.+...+....+.+|+.++|.|.+.+.| .|.+.|+|++ ..+ .....++.+... .+|.|.
T Consensus 35 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 114 (252)
T 3bkj_L 35 VLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRIS 114 (252)
T ss_dssp CCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred cEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEEC
Confidence 3445556778899999999999999988 6899999854 111 011235544432 289999
Q ss_pred cCCCCCCeEEEEEEEeCCcee-eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCC-CCC-
Q psy10160 189 QANATDSGEYRCVASNSYTSD-ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQ-LPS- 265 (558)
Q Consensus 189 ~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~-~~~- 265 (558)
+++.+|+|.|.|.+.|..+.. .....|.|.....+|.+...+. ... ... +......|.+.|. |++
T Consensus 115 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~--~~~-------~~~---g~~v~L~C~~~g~~p~~~ 182 (252)
T 3bkj_L 115 RVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPP--SSE-------QLT---SGGASVVCFLNNFYPKDI 182 (252)
T ss_dssp SCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECC--CHH-------HHH---HTEEEEEEEEEEEBSSCC
T ss_pred CCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCC--Chh-------hcC---CCcEEEEEEEeeEeCCCc
Confidence 999999999999999986643 2335677754333333221110 000 011 2233455555564 443
Q ss_pred cccccchhhhhh
Q psy10160 266 YGPHIKRAVEAE 277 (558)
Q Consensus 266 ~~~w~~~~l~~~ 277 (558)
.+.|++++....
T Consensus 183 ~v~W~k~g~~~~ 194 (252)
T 3bkj_L 183 NVKWKIDGSERQ 194 (252)
T ss_dssp EEEEEETTEEEC
T ss_pred EEEEEECCeecC
Confidence 689999976543
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.10 E-value=6.6e-11 Score=111.51 Aligned_cols=162 Identities=12% Similarity=0.052 Sum_probs=101.1
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCce-EEEccCCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH-YRITESNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~-~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
.+|.+...+.. .+.+|+.++|.|.+.+ +.+.+.|+|++..+...... .....+++|.|.+++.+|+|.|+|.+.|..
T Consensus 6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 83 (242)
T 1p6f_A 6 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE 83 (242)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred CCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCC
Confidence 35667777766 7899999999999976 45689999999876421100 001234579999999999999999999976
Q ss_pred cee--eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhhhhhhhhhh
Q psy10160 207 TSD--ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEAEAAAADKK 284 (558)
Q Consensus 207 G~~--~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~~~~~~~~~ 284 (558)
+.. +..+.|.|.+....|.+...+ ...+..|.... ..|.+.+ .++.+.|++++...........
T Consensus 84 ~~s~~S~~~~L~V~~~~~~P~i~~~p----------~~~v~~G~~vt---L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~ 149 (242)
T 1p6f_A 84 LWSEPSNLLDLVVTEMYDTPTLSVHP----------GPEVISGEKVT---FYCRLDT-ATSMFLLLKEGRSSHVQRGYGK 149 (242)
T ss_dssp EECCCCCCEEEEEECCSCCCEEEEES----------CSEEETTCEEE---EEEECTT-SCSEEEEEECSSSCEEEEEECS
T ss_pred ccccCCcceEEEeecccCCCceEccC----------CCccCCCCcEE---EEEecCC-CCCEEEEEECCCccCccccCCC
Confidence 533 566788887544333322111 11223333344 4454533 3568899998754332111112
Q ss_pred hcccccchhhhhhhHHHhhcc
Q psy10160 285 RRSRRSLSVVNKWSLRQAFTT 305 (558)
Q Consensus 285 ~~grth~q~a~~~t~g~~~~~ 305 (558)
..+..++..+.+.+.|.|.+.
T Consensus 150 ~~~~l~I~~v~~~d~G~Y~C~ 170 (242)
T 1p6f_A 150 VQAEFPLGPVTTAHRGTYRCF 170 (242)
T ss_dssp SEEEEEEEECCGGGCEEEEEE
T ss_pred ceEEEEeCCCccccCEEEEEE
Confidence 234456666777777777664
|
| >3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A | Back alignment and structure |
|---|
Probab=99.10 E-value=4.2e-10 Score=92.95 Aligned_cols=88 Identities=16% Similarity=0.222 Sum_probs=66.7
Q ss_pred CCceEeeCCCcEEEEeEeec--cCCCeEEEEECCEEecc------------CCceEEEccCCeEEEccCCCCCCeEEEEE
Q psy10160 136 LETQVFGVGSDISIPCDVDG--YPIPQVFWYKDGQVIEN------------DGVHYRITESNRLHINQANATDSGEYRCV 201 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g--~P~p~i~W~~~g~~l~~------------~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 201 (558)
+....+.+|+.++|.|...+ .+.+.+.|+|++..+.. -..|+.+..+.+|.|.+++.+|+|.|+|.
T Consensus 10 ~~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~ 89 (117)
T 3q0h_A 10 TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFCI 89 (117)
T ss_dssp SCCEEEETTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEECSTTCEEECSCCGGGCEEEEEE
T ss_pred cCCEEEecCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEeCCceEEEEeeCChhhCEEEEEE
Confidence 45677889999999999987 33456999998654321 02356665677999999999999999999
Q ss_pred EE-eCCceeeEEEEEEEeccCCC
Q psy10160 202 AS-NSYTSDENAVTIRVEGIFIH 223 (558)
Q Consensus 202 a~-N~~G~~~~~~~l~V~~~~~~ 223 (558)
+. +..|.....+.|.|..|+.+
T Consensus 90 v~~~~~g~~~~~~~L~V~~pp~~ 112 (117)
T 3q0h_A 90 YHTYPDGTYTGRIFLEVLESSVA 112 (117)
T ss_dssp EEEETTCCEEEEEEEEEECC---
T ss_pred EEECCCCCeEEEEEEEEEccCcc
Confidence 75 46788889999999877643
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A | Back alignment and structure |
|---|
Probab=99.10 E-value=3.8e-10 Score=119.75 Aligned_cols=89 Identities=27% Similarity=0.388 Sum_probs=78.7
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccC---CeEEEccCCCCCCeEEEEEEEe
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES---NRLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~---~sL~I~~v~~~D~G~Y~C~a~N 204 (558)
..|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++.++..+. ++.+... .+|.|.++.++|+|.|+|+|.|
T Consensus 481 ~~P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~~s~-~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~N 559 (573)
T 3uto_A 481 AQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSV-KYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN 559 (573)
T ss_dssp GSCEEEECCCCEEECTTSCEEEEEEEECSSCCEEEEEETTEECCSSS-SEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred cCCccccCCCCcEEeCCCcEEEEEEEEccCCCeEEEEECCEEcccCC-cEEEEEcCCEEEEEEcCCCcccCcEEEEEEEe
Confidence 45777778888899999999999999999999999999999998654 5555432 2799999999999999999999
Q ss_pred CCceeeEEEEEEE
Q psy10160 205 SYTSDENAVTIRV 217 (558)
Q Consensus 205 ~~G~~~~~~~l~V 217 (558)
..|+.+..+.|+|
T Consensus 560 ~~G~~~~~v~l~V 572 (573)
T 3uto_A 560 SYGTKEEIVFLNV 572 (573)
T ss_dssp TTEEEEEEEEEEE
T ss_pred CCCcEEEEEEEEE
Confidence 9999999999988
|
| >4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-10 Score=104.71 Aligned_cols=156 Identities=17% Similarity=0.130 Sum_probs=91.1
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCCe---EEEEECCEEeccC-----------------CceEEEc------cCCeEEEc
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIPQ---VFWYKDGQVIEND-----------------GVHYRIT------ESNRLHIN 188 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p~---i~W~~~g~~l~~~-----------------~~~~~~~------~~~sL~I~ 188 (558)
.+....+.+|+.++|.|.+.+.|.|. |.|+|++..+... ..++... .+++|.|.
T Consensus 5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~ 84 (218)
T 4frw_A 5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR 84 (218)
T ss_dssp CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence 34567789999999999999988774 8999976543211 0111111 13479999
Q ss_pred cCCCCCCeEEEEEEEeCCceee-EEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcc
Q psy10160 189 QANATDSGEYRCVASNSYTSDE-NAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYG 267 (558)
Q Consensus 189 ~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~ 267 (558)
+++.+|+|.|.|.+.|..+... ....+.+..++. +... ..... .... +......|.+.|.|+|.+
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~-----~~~~---~~~~~~~c~~~g~p~p~i 150 (218)
T 4frw_A 85 NAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPL-PSLN-----PGPAL-----EEGQ---GLTLAASCTAEGSPAPSV 150 (218)
T ss_dssp SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCC-CEEE-----ECSCE-----ETTC---CSEEEEEEEEEEBSCCEE
T ss_pred eccHHHCCceeEEEEeccCceeeeEEEEEEeeecc-ceee-----eeeee-----eeee---ccccceeeeccCCcCceE
Confidence 9999999999999999777664 334444432221 1100 00000 0111 222334455568999999
Q ss_pred cccchhhhhhhhh-hh----hhhcccccchhhhhhhHHHhhc
Q psy10160 268 PHIKRAVEAEAAA-AD----KKRRSRRSLSVVNKWSLRQAFT 304 (558)
Q Consensus 268 ~w~~~~l~~~~~~-~~----~~~~grth~q~a~~~t~g~~~~ 304 (558)
.|++++....... .. .......++..+.....|.|-.
T Consensus 151 ~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC 192 (218)
T 4frw_A 151 TWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTC 192 (218)
T ss_dssp EEEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEE
T ss_pred EEEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEE
Confidence 9999875543322 11 1112234455555555555444
|
| >3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.8e-11 Score=90.92 Aligned_cols=60 Identities=25% Similarity=0.494 Sum_probs=51.2
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccC-CCCCCeEEEEEEEe
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQA-NATDSGEYRCVASN 204 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v-~~~D~G~Y~C~a~N 204 (558)
+...++..|++++|+|.+.|.|. |+|+|+|..++.+ .+++|.|.++ ..+|+|.|+|.|.+
T Consensus 6 p~~~v~~~G~~v~L~C~~~g~P~--i~W~kdg~~l~~~-------~~~~L~I~~v~~~~DsG~Y~C~A~t 66 (82)
T 3r08_E 6 IEYKVSISGTSVELTCPLDSDEN--LKWEKNGQELPQK-------HDKHLVLQDFSEVEDSGYYVCYTPA 66 (82)
T ss_dssp CCCEEEEETTEEEEECSSCCCSS--CEEEETTEECTTC-------CSSCCBCCSCCTTTTCSCEEEECSS
T ss_pred CceeEEEcCCeEEEEEECCCCCc--EEEEECCEECcCC-------CCCEEEECccCccCcCEEEEEEEcc
Confidence 45566778999999999999983 9999999988643 4568999996 77999999999866
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.1e-10 Score=108.47 Aligned_cols=124 Identities=13% Similarity=0.155 Sum_probs=80.4
Q ss_pred cEEEecCCceEeeCCCcEEEEeEee---ccCCCeEEEEECCEEeccC-----------------CceEEEc-----cCCe
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVD---GYPIPQVFWYKDGQVIEND-----------------GVHYRIT-----ESNR 184 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~---g~P~p~i~W~~~g~~l~~~-----------------~~~~~~~-----~~~s 184 (558)
+.+...+....+.+|+.+.|.|.+. +.|.|.+.|+|++...... ..++.+. .+++
T Consensus 6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 85 (268)
T 3mj6_A 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS 85 (268)
T ss_dssp ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence 3445566778899999999999998 7888899999965422111 1233332 2368
Q ss_pred EEEccCCCCCCeEEEEEEEeCCcee--eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccC---
Q psy10160 185 LHINQANATDSGEYRCVASNSYTSD--ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTR--- 259 (558)
Q Consensus 185 L~I~~v~~~D~G~Y~C~a~N~~G~~--~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~--- 259 (558)
|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|. +..|. ...+ .. +......|.+
T Consensus 86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~~~p~---------~~~v------~~---G~~v~L~C~~~~~ 145 (268)
T 3mj6_A 86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL--PEEPR---------DLRV------RV---GDTTQMRCSIQST 145 (268)
T ss_dssp EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE--CCCCS---------EEEE------ET---TCCEEECCBCEES
T ss_pred EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe--ccCCC---------cccc------cc---CCcEEEEEEecCC
Confidence 9999999999999999999986655 455566664 21111 1111 12 2333355666
Q ss_pred CCCCCCcccccchh
Q psy10160 260 AGQLPSYGPHIKRA 273 (558)
Q Consensus 260 ~g~~~~~~~w~~~~ 273 (558)
.+.|.+.+.|+++.
T Consensus 146 ~~~p~~~v~W~~~~ 159 (268)
T 3mj6_A 146 EEKRVTKVNWMFSS 159 (268)
T ss_dssp SSSCCCEEEEEEEC
T ss_pred CCCCccceEEEecC
Confidence 67899999999953
|
| >3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.4e-10 Score=108.13 Aligned_cols=89 Identities=15% Similarity=0.291 Sum_probs=64.2
Q ss_pred EEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECC-----EEe--------ccCCceEEEccC---CeEEEccCCCCC
Q psy10160 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG-----QVI--------ENDGVHYRITES---NRLHINQANATD 194 (558)
Q Consensus 131 ~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g-----~~l--------~~~~~~~~~~~~---~sL~I~~v~~~D 194 (558)
.+...+....+.+|+.++|.|.+.+.|.|.+.|+|.. ..+ .....++..... .+|.|.+++.+|
T Consensus 6 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 85 (250)
T 3esu_F 6 VLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQED 85 (250)
T ss_dssp CEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred eEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhh
Confidence 3445566778899999999999999999999999843 111 111234444332 279999999999
Q ss_pred CeEEEEEEEeCCcee-eEEEEEEEec
Q psy10160 195 SGEYRCVASNSYTSD-ENAVTIRVEG 219 (558)
Q Consensus 195 ~G~Y~C~a~N~~G~~-~~~~~l~V~~ 219 (558)
+|.|.|.+.|..+.. .....|.|..
T Consensus 86 ~G~Y~C~~~n~~~~~~~~~~~l~V~~ 111 (250)
T 3esu_F 86 IGTYFCQQGNTLPWTFGGGTKLEIRR 111 (250)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred CEEEEEEEeeCCCceECCCEEEEEEC
Confidence 999999999987654 2345677754
|
| >1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ... | Back alignment and structure |
|---|
Probab=99.08 E-value=8.9e-11 Score=108.06 Aligned_cols=129 Identities=12% Similarity=0.121 Sum_probs=80.5
Q ss_pred CCceEeeCCCcEEEEeEeeccC---CCeEEEEECC--EEec-----------cCCceEEEccC---CeEEEccCCCCCCe
Q psy10160 136 LETQVFGVGSDISIPCDVDGYP---IPQVFWYKDG--QVIE-----------NDGVHYRITES---NRLHINQANATDSG 196 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P---~p~i~W~~~g--~~l~-----------~~~~~~~~~~~---~sL~I~~v~~~D~G 196 (558)
|....+.+|+.+.|.|.+.|.| .|.+.|+|++ ..+. ....++..... .+|.|.+++.+|+|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 86 (212)
T 1q0x_L 7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA 86 (212)
T ss_dssp CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence 6677889999999999999988 4789999853 2220 11235544332 37999999999999
Q ss_pred EEEEEEEeCCcee-eEEEEEEEeccC-CCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCC--cccccch
Q psy10160 197 EYRCVASNSYTSD-ENAVTIRVEGIF-IHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPS--YGPHIKR 272 (558)
Q Consensus 197 ~Y~C~a~N~~G~~-~~~~~l~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~--~~~w~~~ 272 (558)
.|.|.+.|..+.. .....|.|.... .+|.+...+. ......| ......|.+.|.+++ .+.|+++
T Consensus 87 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~---------~~~~~~g---~~v~L~C~~~g~~p~~~~v~W~k~ 154 (212)
T 1q0x_L 87 IYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPP---------SSEELST---AKATLVCTITDFYPGVVTVDWKVD 154 (212)
T ss_dssp EEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECC---------CHHHHTT---TEEEEEEEEEEEBSSCCEEEEEET
T ss_pred EEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCC---------CHHHccC---CcEEEEEEEEEEeCCCeEEEEEEC
Confidence 9999999987743 234566674322 2222211110 0001112 233345555565444 7999998
Q ss_pred hhhh
Q psy10160 273 AVEA 276 (558)
Q Consensus 273 ~l~~ 276 (558)
+...
T Consensus 155 g~~l 158 (212)
T 1q0x_L 155 GTPV 158 (212)
T ss_dssp TEEE
T ss_pred CEeC
Confidence 7554
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-10 Score=120.84 Aligned_cols=94 Identities=15% Similarity=0.270 Sum_probs=74.0
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECC-EEeccC--CceEEEccCCeEEEccCCCCCCeEEEEEEEeC
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG-QVIEND--GVHYRITESNRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g-~~l~~~--~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
+|.+...+....+.+|+.++|.|.+. |.|.|.|++++ ..+... ..++.+..+++|.|.+++.+|+|.|+|.|.|.
T Consensus 352 ~P~i~~~~~~~~v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~~~~~~~~~~~~g~L~i~~v~~~D~G~Y~C~a~N~ 429 (452)
T 3zyi_A 352 APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNV 429 (452)
T ss_dssp CCCCSBCCCCEECCTTSCCEECCBCC--TTSEEEEECTTSCEECSSCCCSSCEECTTSCEECSSCCTTCCEEEEEEEECS
T ss_pred CcccccccccccccCCCEEEEEEeCC--CCCcEEEEeCCCcEeccCCCCCCEEECCCCeEEEeecCHHHCEEEEEEEEcC
Confidence 45666677788899999999999998 99999999954 444322 23666777889999999999999999999999
Q ss_pred CceeeEEEEEEEeccCCCC
Q psy10160 206 YTSDENAVTIRVEGIFIHP 224 (558)
Q Consensus 206 ~G~~~~~~~l~V~~~~~~p 224 (558)
.|..+.++.|.|.+.+.++
T Consensus 430 ~G~~~~~~~l~v~~~~~~~ 448 (452)
T 3zyi_A 430 AGNSNASAYLNVSTAGTHH 448 (452)
T ss_dssp SCEEEEEEEEEC-------
T ss_pred CCcEEEEEEEEEEcccccC
Confidence 9999999999997665433
|
| >3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-10 Score=112.02 Aligned_cols=91 Identities=15% Similarity=0.304 Sum_probs=65.2
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCE-----Eec--------cCCceEEEccCC---eEEEccCCCC
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQ-----VIE--------NDGVHYRITESN---RLHINQANAT 193 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~-----~l~--------~~~~~~~~~~~~---sL~I~~v~~~ 193 (558)
+.+...+....+.+|+.++|.|.+.+.|.|.+.|+|++. .+. ....++.+..++ +|.|.+++.+
T Consensus 13 ~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 92 (276)
T 3auv_A 13 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPE 92 (276)
T ss_dssp CCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred eeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChh
Confidence 445556777889999999999999999999999998541 111 112355544332 7999999999
Q ss_pred CCeEEEEEEEeCCcee-eEEEEEEEecc
Q psy10160 194 DSGEYRCVASNSYTSD-ENAVTIRVEGI 220 (558)
Q Consensus 194 D~G~Y~C~a~N~~G~~-~~~~~l~V~~~ 220 (558)
|+|.|.|.+.|..+.. .....|.|..+
T Consensus 93 DsG~Y~C~~~n~~~~~~~~~~~l~V~~~ 120 (276)
T 3auv_A 93 DFATYYCQQHYTTPPTFGCGTKVEIKGG 120 (276)
T ss_dssp GCEEEEEEECSSSSCCCCCCEEEEC---
T ss_pred hCEEEEEEEecCCcccccCCEEEEEecC
Confidence 9999999999986542 33456666543
|
| >3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.4e-10 Score=108.80 Aligned_cols=75 Identities=15% Similarity=0.314 Sum_probs=48.9
Q ss_pred eEeeCCCcEEEEeEeecc-C-CCeEEEEECCEEeccC----------CceEEEccCCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 139 QVFGVGSDISIPCDVDGY-P-IPQVFWYKDGQVIEND----------GVHYRITESNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~-P-~p~i~W~~~g~~l~~~----------~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
..+.+|+.+.|.|.+.+. | .+.+.| ++..+... +..|.+ ..+|.|.....+| |.|+|.+.|..
T Consensus 164 ~~~~~g~~v~L~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~d-~~ytC~v~~~~ 238 (256)
T 3sob_H 164 SKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSL--SSVVTVPSSSLGT-QTYICNVNHKP 238 (256)
T ss_dssp -----TTEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEE--EEEEEEEGGGTTT-CCCEEEEEEGG
T ss_pred cccccCCcEEEEEEEEEEECCCeEEEE--CCcccCCCeEeCCceeCCCCCEEE--EEEEEECHHHcCC-ceEEEEEEeCC
Confidence 345689999999999884 5 346899 54443211 112221 1368899999999 99999999998
Q ss_pred ceeeEEEEEEEe
Q psy10160 207 TSDENAVTIRVE 218 (558)
Q Consensus 207 G~~~~~~~l~V~ 218 (558)
+.......+.+.
T Consensus 239 ~~~~~~~~~~~~ 250 (256)
T 3sob_H 239 SNTKVDKKVEPK 250 (256)
T ss_dssp GTEEEEEECCCC
T ss_pred CCcceEEEeccc
Confidence 777666555553
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.07 E-value=3.6e-10 Score=101.36 Aligned_cols=110 Identities=18% Similarity=0.325 Sum_probs=74.9
Q ss_pred eEeeCCCcEEEEeEeeccCCC--eEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy10160 139 QVFGVGSDISIPCDVDGYPIP--QVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 216 (558)
..+.+|+.+.|.|.+.|.|.| .+.|+|++..+..... . .....|.|. +.+|+|.|+|.+.|. ....+.|.
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~-~--~~~~~l~i~--~~~d~G~Y~C~~~n~---~~~~~~l~ 79 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-P--GQKTEFKVD--SDDQWGEYSCVFLPE---PMGTANIQ 79 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC-C--CSEEEEEEC--GGGCCEEEEEEEEST---TSCEEEEE
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccc-c--CCcEEEEEe--chhhCeEEEEEEECC---cCcEEEEE
Confidence 456889999999999998888 8999999998875431 1 122356665 689999999999993 33566777
Q ss_pred EeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCC-CCcccccc
Q psy10160 217 VEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQL-PSYGPHIK 271 (558)
Q Consensus 217 V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~-~~~~~w~~ 271 (558)
|..+ |.+...+ ... .+..|. .....|.+.|.| +|.+.|++
T Consensus 80 V~~~---P~~~~~~---~~~------~~~~g~---~~~l~C~~~g~p~~~~i~W~~ 120 (184)
T 3b5h_A 80 LHGP---PRVKAVK---SSE------HINEGE---TAMLVCKSESVPPVTDWAWYK 120 (184)
T ss_dssp ECCS---CCCEESC---SEE------EECTTS---CEEEEEECCCSSCCCEEEEEE
T ss_pred EecC---CceeecC---CCc------EEcCCC---cEEEEEEECCCCCCCeEEEEE
Confidence 7533 3333222 111 122233 333556666888 79999999
|
| >2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.4e-10 Score=107.69 Aligned_cols=90 Identities=18% Similarity=0.238 Sum_probs=64.2
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECC--E---Eec--------cCCceEEEcc---CCeEEEccCCCCCC
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG--Q---VIE--------NDGVHYRITE---SNRLHINQANATDS 195 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g--~---~l~--------~~~~~~~~~~---~~sL~I~~v~~~D~ 195 (558)
+...+....+.+|+.++|.|.+.+.|.|.+.|+|+. . .+. ....++.+.. ..+|.|.+++.+|+
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 83 (242)
T 2znx_A 4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF 83 (242)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHC
Confidence 445567788999999999999999999999999853 1 111 0123555432 23799999999999
Q ss_pred eEEEEEEEeCCcee-eEEEEEEEeccC
Q psy10160 196 GEYRCVASNSYTSD-ENAVTIRVEGIF 221 (558)
Q Consensus 196 G~Y~C~a~N~~G~~-~~~~~l~V~~~~ 221 (558)
|.|.|.+.|..+.. ...+.|.|..++
T Consensus 84 G~Y~C~~~n~~~~~~~~~~~L~V~~~~ 110 (242)
T 2znx_A 84 GMYFCQQSNSXPYTFGGGTKLEITGGG 110 (242)
T ss_dssp EEEEEEECSSSSCEECCCEEEEEC---
T ss_pred EEEEEeEecCCceEECCCEEEEEcCCC
Confidence 99999999986532 234577776543
|
| >1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B | Back alignment and structure |
|---|
Probab=99.06 E-value=5.8e-10 Score=93.03 Aligned_cols=86 Identities=17% Similarity=0.273 Sum_probs=65.8
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCCC----eEEEEECC-------EEe-------------ccCCceEEEccC------C
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPIP----QVFWYKDG-------QVI-------------ENDGVHYRITES------N 183 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~p----~i~W~~~g-------~~l-------------~~~~~~~~~~~~------~ 183 (558)
..+....+.+|+.++|.|.+.+.|.+ .+.|++++ ..+ .....++.+..+ .
T Consensus 10 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 89 (126)
T 1eaj_A 10 TPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDA 89 (126)
T ss_dssp SSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBC
T ss_pred CCCceEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcccccCCeE
Confidence 34456678999999999999887653 49999864 222 111235555443 6
Q ss_pred eEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEec
Q psy10160 184 RLHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219 (558)
Q Consensus 184 sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 219 (558)
+|.|.+++.+|+|.|.|.+.|..|.....+.|.|..
T Consensus 90 sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~ 125 (126)
T 1eaj_A 90 SINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 125 (126)
T ss_dssp CEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEECcCChHHCeEEEEEEEcCCccCCcEEEEEEEc
Confidence 899999999999999999999999888889998853
|
| >3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ... | Back alignment and structure |
|---|
Probab=99.05 E-value=8.1e-11 Score=108.26 Aligned_cols=126 Identities=14% Similarity=0.143 Sum_probs=79.9
Q ss_pred ceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEec---c--------CCceEEEc---cCCeEEEccCCCCCCeEEEEE
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVIE---N--------DGVHYRIT---ESNRLHINQANATDSGEYRCV 201 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l~---~--------~~~~~~~~---~~~sL~I~~v~~~D~G~Y~C~ 201 (558)
...+.+|+.+.|.|.+. |.|.+.|+|+ +..+. . ...++.+. .+.+|.|.+++.+|+|.|.|.
T Consensus 9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 86 (211)
T 3tv3_L 9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG 86 (211)
T ss_dssp EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence 67789999999999998 8899999994 22211 0 11244422 234799999999999999999
Q ss_pred EEeCCc--eeeEEEEEEEeccC-CCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCC--CCCcccccchhhhh
Q psy10160 202 ASNSYT--SDENAVTIRVEGIF-IHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQ--LPSYGPHIKRAVEA 276 (558)
Q Consensus 202 a~N~~G--~~~~~~~l~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~--~~~~~~w~~~~l~~ 276 (558)
+.|..| .....+.|.|...+ .+|.+...+. ......|....+.| .+.|. +.+.+.|++++...
T Consensus 87 ~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~---------~~~~~~g~~v~l~C---~~~g~~p~~~~v~W~k~g~~l 154 (211)
T 3tv3_L 87 SLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPP---------SSEELQANKATLVC---LISDFYPGAVTVAWKADSSPV 154 (211)
T ss_dssp EEETTTEEEECCCEEEEECCSCCBCCEEEEECC---------CHHHHHTTCEEEEE---EEEEEBSSCCEEEEEETTEEE
T ss_pred EecCCCceeECCCceEEEeCCCCcCCeeEecCC---------chhhhcCCCeEEEE---EeeeecCCCeEEEEEECCeec
Confidence 999988 34566778886322 2232221110 00011233344444 44454 35778999997655
Q ss_pred h
Q psy10160 277 E 277 (558)
Q Consensus 277 ~ 277 (558)
.
T Consensus 155 ~ 155 (211)
T 3tv3_L 155 K 155 (211)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-09 Score=91.67 Aligned_cols=88 Identities=20% Similarity=0.297 Sum_probs=65.8
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCC---CeEEEEECCEE--ec--------------cCCceEEEcc------CCeEEE
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPI---PQVFWYKDGQV--IE--------------NDGVHYRITE------SNRLHI 187 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~---p~i~W~~~g~~--l~--------------~~~~~~~~~~------~~sL~I 187 (558)
..++....+.+|++++|.|.+.+.|. +.+.|++++.. +. .-..|+.+.. +.+|.|
T Consensus 10 ~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I 89 (139)
T 1pko_A 10 IGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRI 89 (139)
T ss_dssp ECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEE
T ss_pred ECCCCCEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEE
Confidence 33455678899999999999987653 68999997641 10 0012444432 247999
Q ss_pred ccCCCCCCeEEEEEEEeCCceeeEEEEEEEecc
Q psy10160 188 NQANATDSGEYRCVASNSYTSDENAVTIRVEGI 220 (558)
Q Consensus 188 ~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 220 (558)
.+++.+|+|.|+|.+.|..|.....+.|.|.+|
T Consensus 90 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~P 122 (139)
T 1pko_A 90 QNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDP 122 (139)
T ss_dssp SSCCGGGCEEEEEEEEETTEEEEEEEEEEEECT
T ss_pred ccCCHHHCEEEEEEEEcCCCceEEEEEEEEecC
Confidence 999999999999999999998888999999744
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-10 Score=106.47 Aligned_cols=138 Identities=12% Similarity=0.147 Sum_probs=86.3
Q ss_pred eeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEecc
Q psy10160 141 FGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVEGI 220 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 220 (558)
+.+|+.++|.|.+ |.|.|.|+|+|..+... ...+++|.|.+++.+|+|.|+|.+.|..+ ..+.|.|...
T Consensus 15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~-----~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s---~~~~v~v~~~ 83 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL-----TEDKKKWNLGSNAKDPRGMYQCKGSQNKS---KPLQVYYRMG 83 (204)
T ss_dssp CCSSSEEEEEECS---CSSEEEEEETTEEEEEE-----ESSCCCEEEEEGGGCCEEEEEEESSSSCC---CCEEEEEEC-
T ss_pred ecCCCeEEEEEcC---CCCEEEEEECCEECCCC-----CCCCCeEEeCCCCcCCCEEEEEEecCCCC---eeEEEEEEEe
Confidence 3689999999999 88999999999887542 12456899999999999999999765332 2244544300
Q ss_pred ------C----------------------CCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccch
Q psy10160 221 ------F----------------------IHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKR 272 (558)
Q Consensus 221 ------~----------------------~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~ 272 (558)
. .++.+... ...+.. . +......|. |.|.|.+.|+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----p~~v~~------~---G~~v~L~C~--g~p~p~i~W~k~ 148 (204)
T 1sy6_A 84 SADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQT----PYKVSI------S---GTTVILTCP--QYPGSEILWQHN 148 (204)
T ss_dssp -----------------------------------CC----CCEEEE------E---TTEEEEECS--CCCSSCEEEEET
T ss_pred ccccccccccccccccccccccccccccccccceecC----Cceeee------c---CCcEEEEcC--CCCCCceEEEEC
Confidence 0 01111100 111111 1 344556676 689999999999
Q ss_pred hhhhhhhh-hhhh--hcccccchhh-hhhhHHHhhc
Q psy10160 273 AVEAEAAA-ADKK--RRSRRSLSVV-NKWSLRQAFT 304 (558)
Q Consensus 273 ~l~~~~~~-~~~~--~~grth~q~a-~~~t~g~~~~ 304 (558)
+....... .... ..+...+..+ .....|.|..
T Consensus 149 ~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C 184 (204)
T 1sy6_A 149 DKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVC 184 (204)
T ss_dssp TEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEE
T ss_pred CEECCCccCCceEecCCCEEEEeeCCccccCEEEEE
Confidence 76543321 1111 2455666777 7777777765
|
| >3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.7e-10 Score=108.39 Aligned_cols=89 Identities=19% Similarity=0.287 Sum_probs=64.0
Q ss_pred EEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECC--EE---ec---------cCCceEEEc-----cCCeEEEccCC
Q psy10160 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG--QV---IE---------NDGVHYRIT-----ESNRLHINQAN 191 (558)
Q Consensus 131 ~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g--~~---l~---------~~~~~~~~~-----~~~sL~I~~v~ 191 (558)
.+...+....+.+|+.++|.|.+.+.|.|.+.|+|.. .. +. ....++.+. ...+|.|.+++
T Consensus 5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~ 84 (256)
T 3tf7_C 5 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH 84 (256)
T ss_dssp EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCC
T ss_pred EEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCC
Confidence 4555667788999999999999999999999999832 11 10 011244431 12379999999
Q ss_pred CCCCeEEEEEEEeCCcee----eEEEEEEEec
Q psy10160 192 ATDSGEYRCVASNSYTSD----ENAVTIRVEG 219 (558)
Q Consensus 192 ~~D~G~Y~C~a~N~~G~~----~~~~~l~V~~ 219 (558)
.+|+|.|.|.+.|..+.. ...+.|.|..
T Consensus 85 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~ 116 (256)
T 3tf7_C 85 RSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSP 116 (256)
T ss_dssp GGGCSEEEEEEECTTCTTCEEECCCEEEEEEC
T ss_pred cccCEEEEEEEecCCCccceEECCCeEEEEeC
Confidence 999999999999986532 2345677764
|
| >2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-10 Score=107.31 Aligned_cols=134 Identities=13% Similarity=0.163 Sum_probs=81.8
Q ss_pred eCcEEEecCCceE--eeCCCcEEEEeEeecc---CC-CeEEEEECCEEeccCC---------ceEEEccCCeEEEccCCC
Q psy10160 128 VPVKVNITLETQV--FGVGSDISIPCDVDGY---PI-PQVFWYKDGQVIENDG---------VHYRITESNRLHINQANA 192 (558)
Q Consensus 128 ~p~~~~~~~~~~~--v~~G~~v~L~C~~~g~---P~-p~i~W~~~g~~l~~~~---------~~~~~~~~~sL~I~~v~~ 192 (558)
.+|.+...+.... +.+|+.+.|.|.+.|. |. |.|.|+|++..+.... .+|. ..++|.|.+++.
T Consensus 8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~~~~ 85 (218)
T 2rgs_A 8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIR--VVSTLPIQHQDW 85 (218)
T ss_dssp -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEE--EEEEEECCHHHH
T ss_pred CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEE--EEEEEEEcHHHc
Confidence 3555555444444 7899999999999998 44 7899999998765321 1221 124799999999
Q ss_pred CCCeEEEEEEEeCCcee--eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCC-CCCC-ccc
Q psy10160 193 TDSGEYRCVASNSYTSD--ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAG-QLPS-YGP 268 (558)
Q Consensus 193 ~D~G~Y~C~a~N~~G~~--~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g-~~~~-~~~ 268 (558)
+|+|.|+|.|.|..+.. ...+.+ +.....+|.+. +....... ..+......|.+.| .|++ .+.
T Consensus 86 ~D~g~Y~C~~~~~~~~~~~~~~v~~-~~~~~~~P~v~-----------~~~~~~~~-~~g~~~~L~C~~~g~~P~~~~v~ 152 (218)
T 2rgs_A 86 MSGKEFKCKVNNKDLPSPIERTISK-IKGLVRAPQVY-----------ILPPPAEQ-LSRKDVSLTCLVVGFNPGDISVE 152 (218)
T ss_dssp HTTCCEEEEEEETTCSSCEEEEECC-CCCCCBCCEEE-----------EECCCGGG-TTSSEEEEEEEEEEEBSSCCEEE
T ss_pred CCCCeEEEEEECCcCCCcceEEEee-cCCCCCCCEEE-----------EECCChHH-hcCCceEEEEEEEeeeCCCcEEE
Confidence 99999999999987754 222211 01112222221 11110000 01334445666667 4555 899
Q ss_pred ccchhhhh
Q psy10160 269 HIKRAVEA 276 (558)
Q Consensus 269 w~~~~l~~ 276 (558)
|++++...
T Consensus 153 W~k~g~~~ 160 (218)
T 2rgs_A 153 WTSNGHTE 160 (218)
T ss_dssp EEETTEEE
T ss_pred EEECCEec
Confidence 99997654
|
| >2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ... | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-10 Score=106.61 Aligned_cols=130 Identities=13% Similarity=0.095 Sum_probs=79.6
Q ss_pred CCceEeeCCCcEEEEeEe-eccC-CCeEEEEECC--EEe-----------ccCCceEEEcc---CCeEEEccCCCCCCeE
Q psy10160 136 LETQVFGVGSDISIPCDV-DGYP-IPQVFWYKDG--QVI-----------ENDGVHYRITE---SNRLHINQANATDSGE 197 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~-~g~P-~p~i~W~~~g--~~l-----------~~~~~~~~~~~---~~sL~I~~v~~~D~G~ 197 (558)
|....+.+|+.++|.|.+ .+.| .|.+.|+|++ ..+ .....++.+.. +.+|.|.+++.+|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 86 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD 86 (216)
T ss_dssp CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence 556778999999999995 4443 5789999853 211 01123555432 2379999999999999
Q ss_pred EEEEEEeCCc--eeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCC-CCCC-cccccchh
Q psy10160 198 YRCVASNSYT--SDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAG-QLPS-YGPHIKRA 273 (558)
Q Consensus 198 Y~C~a~N~~G--~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g-~~~~-~~~w~~~~ 273 (558)
|.|.+.|..+ .......|.|.....+|.+...+.. .. ...| ......|.+.| .|+| .+.|++++
T Consensus 87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~--~~-------~~~g---~~v~L~C~~~g~~P~~~~v~W~k~g 154 (216)
T 2xzc_L 87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPS--DE-------QLKS---GTASVVCLLNNFYPREAKVQWKVDN 154 (216)
T ss_dssp EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCC--HH-------HHHT---TEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCC--hh-------hccC---CcEEEEEEEEeEcCCceEEEEEECC
Confidence 9999999887 2233456777544333333211100 00 0112 23335555556 4444 79999997
Q ss_pred hhhh
Q psy10160 274 VEAE 277 (558)
Q Consensus 274 l~~~ 277 (558)
....
T Consensus 155 ~~~~ 158 (216)
T 2xzc_L 155 ALQS 158 (216)
T ss_dssp EECC
T ss_pred eecC
Confidence 6543
|
| >3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.8e-10 Score=106.78 Aligned_cols=92 Identities=18% Similarity=0.307 Sum_probs=54.8
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEE---ec-cC-------------CceEEE----ccCCeE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQV---IE-ND-------------GVHYRI----TESNRL 185 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~---l~-~~-------------~~~~~~----~~~~sL 185 (558)
+|.+...+....+.+|+.++|.|.+.+.|.|.+.|+|. +.. +. .. ++++.. ....+|
T Consensus 2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 81 (259)
T 3omz_A 2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM 81 (259)
T ss_dssp ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence 34556667788899999999999999999999999982 111 00 00 011111 122479
Q ss_pred EEccCCCCCCeEEEEEEEeCCc---eeeEEEEEEEecc
Q psy10160 186 HINQANATDSGEYRCVASNSYT---SDENAVTIRVEGI 220 (558)
Q Consensus 186 ~I~~v~~~D~G~Y~C~a~N~~G---~~~~~~~l~V~~~ 220 (558)
.|.+++.+|+|.|.|.+.|..+ .......|.|..+
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~ 119 (259)
T 3omz_A 82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDK 119 (259)
T ss_dssp EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC-
T ss_pred EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecC
Confidence 9999999999999999999876 3345567777654
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3e-10 Score=106.58 Aligned_cols=128 Identities=14% Similarity=0.288 Sum_probs=78.9
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEe--------------ccCCceEEEcc----CCeEEEccCCC
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVI--------------ENDGVHYRITE----SNRLHINQANA 192 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l--------------~~~~~~~~~~~----~~sL~I~~v~~ 192 (558)
...+....+.+|+.++|.|. .+.|.|.+.|+|+ +... .....++.+.. ..+|.|.+++.
T Consensus 4 ~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~ 82 (238)
T 2p1y_A 4 TQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATP 82 (238)
T ss_dssp EEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCG
T ss_pred eECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCc
Confidence 44567788999999999999 7889999999995 2111 00122444432 34799999999
Q ss_pred CCCeEEEEEEEeCCcee-----eEEEEEEEeccCCCC---------CCCCCCccccceeEEeceeeecccceeEEEEecc
Q psy10160 193 TDSGEYRCVASNSYTSD-----ENAVTIRVEGIFIHP---------SCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCT 258 (558)
Q Consensus 193 ~D~G~Y~C~a~N~~G~~-----~~~~~l~V~~~~~~p---------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~ 258 (558)
+|+|.|.|.+.|..|.. .....|.|...+..+ .+... .. .+ .+..| ......|.
T Consensus 83 ~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~---p~-~~-----~v~~G---~~v~L~C~ 150 (238)
T 2p1y_A 83 SQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQS---PQ-SL-----TVWEG---ETAILNCS 150 (238)
T ss_dssp GGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEE---CS-EE-----EEETT---SCEEEEEE
T ss_pred ccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEcc---Cc-eE-----EEeCC---CeEEEEEE
Confidence 99999999999987631 133466665432100 11110 01 11 12233 33345666
Q ss_pred CCCCCCCcccccchh
Q psy10160 259 RAGQLPSYGPHIKRA 273 (558)
Q Consensus 259 ~~g~~~~~~~w~~~~ 273 (558)
+.+.|.+.+.|+++.
T Consensus 151 ~~~~p~~~i~W~k~~ 165 (238)
T 2p1y_A 151 YENSAFDYFPWYQQF 165 (238)
T ss_dssp CCCTTCCEEEEEEEC
T ss_pred EecCCCCcEEEEEEC
Confidence 668888999999974
|
| >4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=6.9e-10 Score=102.44 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=76.3
Q ss_pred ceEeeCCCcEEEEeEeeccCCCe---EEEEECCEEecc---------------CCceEEE----------ccCCeEEEcc
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIPQ---VFWYKDGQVIEN---------------DGVHYRI----------TESNRLHINQ 189 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p~---i~W~~~g~~l~~---------------~~~~~~~----------~~~~sL~I~~ 189 (558)
+..+..|++++|.|.+.+.|.|. |.|+|++..+.. ...+... ..+++|.|.+
T Consensus 10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~ 89 (225)
T 4fmk_A 10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG 89 (225)
T ss_dssp EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence 45678999999999999988774 789997643310 0011111 1235799999
Q ss_pred CCCCCCeEEEEEEEeCCceeeE-EEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCccc
Q psy10160 190 ANATDSGEYRCVASNSYTSDEN-AVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGP 268 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N~~G~~~~-~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~ 268 (558)
++.+|+|.|+|.+.|..|.... ...+.+..++ .....+. .. .....+......|...+.|++.+.
T Consensus 90 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---------~~--~~~~~~~~~~~c~~~~~~P~~~~~ 155 (225)
T 4fmk_A 90 LRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQP---ENHAEAQ---------EV--TIGPQSVAVARCVSTGGRPPARIT 155 (225)
T ss_dssp CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCC---EEEEEEC---------CB--CCSSSCEEEEEEEEEEEBSCCEEE
T ss_pred CCHHHCcceEEEEEeCCCcceeeeeeeeeecCC---ceeeccc---------ce--eecceeeeeeeeeecCCCCCCEEE
Confidence 9999999999999998876653 3444443322 1110000 00 001112222222334478889999
Q ss_pred ccchhhhhh
Q psy10160 269 HIKRAVEAE 277 (558)
Q Consensus 269 w~~~~l~~~ 277 (558)
|++++....
T Consensus 156 w~~~~~~~~ 164 (225)
T 4fmk_A 156 WISSLGGEA 164 (225)
T ss_dssp EECSSCCEE
T ss_pred EEECCcccc
Confidence 998865443
|
| >1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=8.1e-10 Score=106.69 Aligned_cols=87 Identities=16% Similarity=0.320 Sum_probs=62.0
Q ss_pred ecCCceEeeCCCcEEEEeEeeccC--CCeEEEEECC--EEec----------------cCCceEEEcc-----CCeEEEc
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYP--IPQVFWYKDG--QVIE----------------NDGVHYRITE-----SNRLHIN 188 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~g--~~l~----------------~~~~~~~~~~-----~~sL~I~ 188 (558)
..|....+.+|+.++|.|.+.|.| .|.+.|+|++ ..+. ....|+.+.. ..+|.|.
T Consensus 31 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 110 (282)
T 1qok_A 31 QQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLS 110 (282)
T ss_dssp EECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred ECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEEC
Confidence 345577889999999999999885 6789999853 1110 0013555442 2479999
Q ss_pred cCCCCCCeEEEEEEEeCCce-----eeEEEEEEEecc
Q psy10160 189 QANATDSGEYRCVASNSYTS-----DENAVTIRVEGI 220 (558)
Q Consensus 189 ~v~~~D~G~Y~C~a~N~~G~-----~~~~~~l~V~~~ 220 (558)
+++.+|+|.|.|.+.|..|. ....+.|.|...
T Consensus 111 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~ 147 (282)
T 1qok_A 111 SLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSG 147 (282)
T ss_dssp SCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC-
T ss_pred cCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecC
Confidence 99999999999999999761 123456777654
|
| >2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.1e-11 Score=110.18 Aligned_cols=65 Identities=15% Similarity=0.370 Sum_probs=47.1
Q ss_pred CCcEEEEeEeecc-C-CCeEEEEECCEEeccCCce---EEEc--------cC-C------eEEEccCCCCCCeEEEEEEE
Q psy10160 144 GSDISIPCDVDGY-P-IPQVFWYKDGQVIENDGVH---YRIT--------ES-N------RLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 144 G~~v~L~C~~~g~-P-~p~i~W~~~g~~l~~~~~~---~~~~--------~~-~------sL~I~~v~~~D~G~Y~C~a~ 203 (558)
|+.+.|.|.+.|. | .+.|.|+|+|..+...... +... .+ + .|.|.....+|.|.|+|.|.
T Consensus 133 ~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~ 212 (231)
T 2w59_A 133 LSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAV 212 (231)
T ss_dssp SSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEE
T ss_pred cCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEE
Confidence 5579999999996 4 3689999999988643200 1111 22 2 47788888888999999999
Q ss_pred eCCce
Q psy10160 204 NSYTS 208 (558)
Q Consensus 204 N~~G~ 208 (558)
|....
T Consensus 213 n~~l~ 217 (231)
T 2w59_A 213 HEALP 217 (231)
T ss_dssp CTTST
T ss_pred cCCCC
Confidence 98654
|
| >4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.03 E-value=6.9e-11 Score=109.57 Aligned_cols=122 Identities=19% Similarity=0.238 Sum_probs=80.4
Q ss_pred ceEeeCCCcEEEEeEeeccCC-----CeEEEEECCEEe------------ccCCceEEEcc------CCeEEEccCCCCC
Q psy10160 138 TQVFGVGSDISIPCDVDGYPI-----PQVFWYKDGQVI------------ENDGVHYRITE------SNRLHINQANATD 194 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~-----p~i~W~~~g~~l------------~~~~~~~~~~~------~~sL~I~~v~~~D 194 (558)
+..+.+|+.+.|.|.+.+.|. +.+.|++++... .....++.+.. +.+|.|.+++.+|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D 83 (222)
T 4i0k_A 4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD 83 (222)
T ss_dssp CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence 456789999999999999875 789999987432 11122444433 5689999999999
Q ss_pred CeEEEEEEEeCCceeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccC-CCCCCCcccccchh
Q psy10160 195 SGEYRCVASNSYTSDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTR-AGQLPSYGPHIKRA 273 (558)
Q Consensus 195 ~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~-~g~~~~~~~w~~~~ 273 (558)
+|.|+|.+.|. +..+..+.|.|..++..|.+...+ .. .+..|.... ..|.+ .+.|.+.+.|+++.
T Consensus 84 ~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i~~~~---~~-------~v~~G~~~~---l~C~~~~g~P~~~v~W~~~~ 149 (222)
T 4i0k_A 84 EGSYTCFVSIQ-DFDSAAVSLQVAAPYSKPSMTLEP---NK-------DLRPGNMVT---ITCSSYQGYPEAEVFWKDGQ 149 (222)
T ss_dssp CSCEEEEEEEC-CCCCCCCCCCCCBCCCCCEEECCC---------------CCSEEE---EEEEEEEEBSCCEEEEECTT
T ss_pred CEEEEEEEEeC-CCceEEEEEEEEcCCCCCcEEeCC---Cc-------eecCCceEE---EEEecccccCCCeEEEEcCC
Confidence 99999999996 455566677776554333332211 11 112222334 44554 47899999999843
|
| >3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-09 Score=89.84 Aligned_cols=83 Identities=16% Similarity=0.274 Sum_probs=63.0
Q ss_pred CceEeeCCCcEEEEeEe-eccCCCe----EEEEECCEE-------------eccCCceEEEcc--------CCeEEEccC
Q psy10160 137 ETQVFGVGSDISIPCDV-DGYPIPQ----VFWYKDGQV-------------IENDGVHYRITE--------SNRLHINQA 190 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~-~g~P~p~----i~W~~~g~~-------------l~~~~~~~~~~~--------~~sL~I~~v 190 (558)
....+.+|+.++|.|.+ .+.|.+. +.|+|++.. ... ..++.+.. +.+|.|.++
T Consensus 8 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~sL~I~~v 86 (118)
T 3udw_C 8 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE-SKRLEFVAARLGAELRNASLRMFGL 86 (118)
T ss_dssp SEEEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETT-CSSEEETTCCTTSCCCBCCEEECSC
T ss_pred CeEEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCC-cCcEEEecccccCCCCCcEEEEeec
Confidence 34678899999999999 5555554 999997532 111 23444443 558999999
Q ss_pred CCCCCeEEEEEEEe-CCceeeEEEEEEEecc
Q psy10160 191 NATDSGEYRCVASN-SYTSDENAVTIRVEGI 220 (558)
Q Consensus 191 ~~~D~G~Y~C~a~N-~~G~~~~~~~l~V~~~ 220 (558)
+.+|+|.|.|.+.| ..|.....+.|.|..+
T Consensus 87 ~~~D~G~Y~C~v~~~~~~~~~~~~~L~V~~~ 117 (118)
T 3udw_C 87 RVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK 117 (118)
T ss_dssp CGGGCEEEEEEEEEETTEEEEEEEEEEEEC-
T ss_pred ChHHCeEEEEEEEECCCCCccceEEEEEEeC
Confidence 99999999999999 7888888899998654
|
| >3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ... | Back alignment and structure |
|---|
Probab=99.03 E-value=2.5e-10 Score=104.93 Aligned_cols=127 Identities=17% Similarity=0.222 Sum_probs=78.8
Q ss_pred CCceEeeCCCcEEEEeEeeccC--CCeEEEEEC--CEEec---------------cCCceEEEcc-----CCeEEEccCC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYP--IPQVFWYKD--GQVIE---------------NDGVHYRITE-----SNRLHINQAN 191 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~--g~~l~---------------~~~~~~~~~~-----~~sL~I~~v~ 191 (558)
+....+.+|+.+.|.|.+.|.| .|.+.|+|+ +.... ....|+.+.. +.+|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 86 (210)
T 3d9a_H 7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT 86 (210)
T ss_dssp ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence 4556789999999999999976 478999985 22210 0123555432 1389999999
Q ss_pred CCCCeEEEEEEEeCCceeeEEEEEEEec-cCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCC-CCC-ccc
Q psy10160 192 ATDSGEYRCVASNSYTSDENAVTIRVEG-IFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQ-LPS-YGP 268 (558)
Q Consensus 192 ~~D~G~Y~C~a~N~~G~~~~~~~l~V~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~-~~~-~~~ 268 (558)
.+|+|.|.|.+.|.. .......|.|.. ++.+|.+...+ .. ..... +......|.+.|. |.| .+.
T Consensus 87 ~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~--~~-------~~~~~---g~~v~L~C~~~g~~P~p~~v~ 153 (210)
T 3d9a_H 87 TEDTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLA--PG-------SAAQT---NSMVTLGCLVKGYFPEPVTVT 153 (210)
T ss_dssp GGGCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEEC--CT-------TSCCC---SSEEEEEEEEEEEBSSCCEEE
T ss_pred cccCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEec--CC-------ccccc---CCcEEEEEEEeeEecCCcEEE
Confidence 999999999999964 222335666753 12222211110 00 01112 3334455666576 777 899
Q ss_pred ccchhhh
Q psy10160 269 HIKRAVE 275 (558)
Q Consensus 269 w~~~~l~ 275 (558)
|++++..
T Consensus 154 W~~~~~~ 160 (210)
T 3d9a_H 154 WNSGSLS 160 (210)
T ss_dssp EGGGTBC
T ss_pred EeeCCcc
Confidence 9998754
|
| >3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.7e-11 Score=113.40 Aligned_cols=137 Identities=12% Similarity=0.176 Sum_probs=67.2
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECC--EEe-----------ccCCceEEEcc---CCeEEEccCCCC
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG--QVI-----------ENDGVHYRITE---SNRLHINQANAT 193 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g--~~l-----------~~~~~~~~~~~---~~sL~I~~v~~~ 193 (558)
+.+...+....+.+|+.+.|.|.+.+.|.|.+.|+|++ ..+ .....++.... +.+|.|.+++.+
T Consensus 24 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 103 (233)
T 3bqu_C 24 TTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSE 103 (233)
T ss_dssp CCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CC
T ss_pred eeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHH
Confidence 34445567778899999999999999998999999853 111 00012333222 227999999999
Q ss_pred CCeEEEEEEEeCCcee-eEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCC--ccccc
Q psy10160 194 DSGEYRCVASNSYTSD-ENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPS--YGPHI 270 (558)
Q Consensus 194 D~G~Y~C~a~N~~G~~-~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~--~~~w~ 270 (558)
|+|.|.|.+.|..+.. .....|.|.....+|.+...+. .. .... +......|.+.|.+++ .+.|+
T Consensus 104 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~--~~-------~~~~---g~~v~L~C~~~g~~p~~~~v~W~ 171 (233)
T 3bqu_C 104 DVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPP--SS-------EQLT---SGGASVVCFLNNFYPKDINVKWK 171 (233)
T ss_dssp CCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECC--CH-------HHHH---TTEEEEEEEEEEEBSSCEEEEEE
T ss_pred HCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCC--CH-------Hhhc---CCceEEEEEEccccCCceEEEEE
Confidence 9999999999987643 2234566654332333221110 00 0011 2233455656564443 69999
Q ss_pred chhhhhhh
Q psy10160 271 KRAVEAEA 278 (558)
Q Consensus 271 ~~~l~~~~ 278 (558)
+++.....
T Consensus 172 k~g~~~~~ 179 (233)
T 3bqu_C 172 IDGSERQN 179 (233)
T ss_dssp EC-----C
T ss_pred ECCeeCCC
Confidence 99866543
|
| >3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=9.2e-10 Score=104.58 Aligned_cols=93 Identities=15% Similarity=0.242 Sum_probs=66.2
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeecc--CCCeEEEEECC--EEe----------------ccCCceEEEccC-----
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGY--PIPQVFWYKDG--QVI----------------ENDGVHYRITES----- 182 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~--P~p~i~W~~~g--~~l----------------~~~~~~~~~~~~----- 182 (558)
.++.+...+....+.+|+.++|.|.+.+. |.+.+.|+|.. ..+ .....|+.+..+
T Consensus 5 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 84 (256)
T 3juy_B 5 HHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT 84 (256)
T ss_dssp --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred cceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence 35667778888999999999999999983 77889999732 110 001135555422
Q ss_pred CeEEEccCCCCCCeEEEEEEEeC------------CceeeEEEEEEEecc
Q psy10160 183 NRLHINQANATDSGEYRCVASNS------------YTSDENAVTIRVEGI 220 (558)
Q Consensus 183 ~sL~I~~v~~~D~G~Y~C~a~N~------------~G~~~~~~~l~V~~~ 220 (558)
.+|.|.+++.+|+|.|.|.+.|. .+.......|.|...
T Consensus 85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~ 134 (256)
T 3juy_B 85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSG 134 (256)
T ss_dssp EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSC
T ss_pred EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCC
Confidence 26999999999999999999997 333445567778653
|
| >1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.02 E-value=7.4e-11 Score=108.62 Aligned_cols=130 Identities=15% Similarity=0.194 Sum_probs=80.6
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEec-----------cCCceEEEcc---CCeEEEccCCCCCCeEEE
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVIE-----------NDGVHYRITE---SNRLHINQANATDSGEYR 199 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l~-----------~~~~~~~~~~---~~sL~I~~v~~~D~G~Y~ 199 (558)
+....+.+|+.++|.|.+.+.|.|.+.|+|+ +..+. ....++.+.. ..+|.|.+++.+|+|.|+
T Consensus 6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 85 (212)
T 1nfd_E 6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY 85 (212)
T ss_dssp CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence 6677889999999999999999899999984 33221 0023554432 237999999999999999
Q ss_pred EEEEeCCc-ee--eEEEEEEEeccC-CCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCC-CC-Ccccccchh
Q psy10160 200 CVASNSYT-SD--ENAVTIRVEGIF-IHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQ-LP-SYGPHIKRA 273 (558)
Q Consensus 200 C~a~N~~G-~~--~~~~~l~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~-~~-~~~~w~~~~ 273 (558)
|.+.|..+ .. .....|.|...+ .+|.+...+. ... . .. +......|.+.|. |+ +.+.|++++
T Consensus 86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~--~~~-~------~~---g~~v~L~C~~~g~~p~~~~v~W~k~g 153 (212)
T 1nfd_E 86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPP--SPE-E------LR---TNKATLVCLVNDFYPGSATVTWKANG 153 (212)
T ss_dssp EEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCC--CHH-H------HH---TTEECCCEEEEEEBSSCCEEEEEETT
T ss_pred EEEEcccCcccccCCceEEEEccCCCCCCEEEeeCC--chH-h------cc---CCceEEEEEEEeeECCccEEEEEECC
Confidence 99998322 21 233556664332 2333221110 000 0 11 2223355656566 44 689999987
Q ss_pred hhhh
Q psy10160 274 VEAE 277 (558)
Q Consensus 274 l~~~ 277 (558)
....
T Consensus 154 ~~~~ 157 (212)
T 1nfd_E 154 ATIN 157 (212)
T ss_dssp EEEC
T ss_pred eEcC
Confidence 5543
|
| >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.6e-10 Score=106.13 Aligned_cols=75 Identities=13% Similarity=0.260 Sum_probs=56.6
Q ss_pred EecCCceE-eeCCCcEEEEeEeeccC---C-CeEEEEECCEEeccC---------CceEEEccCCeEEEccCCCCCCeEE
Q psy10160 133 NITLETQV-FGVGSDISIPCDVDGYP---I-PQVFWYKDGQVIEND---------GVHYRITESNRLHINQANATDSGEY 198 (558)
Q Consensus 133 ~~~~~~~~-v~~G~~v~L~C~~~g~P---~-p~i~W~~~g~~l~~~---------~~~~~~~~~~sL~I~~v~~~D~G~Y 198 (558)
..+|.... +.+|+.+.|.|.+.|.| . +.|.|+|++..+... +.+|. ..++|.|.+++.+|+|.|
T Consensus 6 ~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y 83 (207)
T 2vol_A 6 IFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFR--SVSELPIMHQDWLNGKEF 83 (207)
T ss_dssp EECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEE--EEEEEECCHHHHHTTCCE
T ss_pred EeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEE--EEEEEEEehhHcCCCCEE
Confidence 33444444 78999999999999985 2 389999999776532 11221 124799999999999999
Q ss_pred EEEEEeCCcee
Q psy10160 199 RCVASNSYTSD 209 (558)
Q Consensus 199 ~C~a~N~~G~~ 209 (558)
+|.|.|..|..
T Consensus 84 ~C~a~~~~~~~ 94 (207)
T 2vol_A 84 KCRVNSAAFPA 94 (207)
T ss_dssp EEEEECTTCSS
T ss_pred EEEEEccCCCC
Confidence 99999998864
|
| >1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.02 E-value=8.5e-10 Score=101.26 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=44.4
Q ss_pred EEEEeEeecc-CC-CeEEEEECCEEeccCCceEEEccCCeEEEccCCC-CCCeEEEEEEEeCCcee
Q psy10160 147 ISIPCDVDGY-PI-PQVFWYKDGQVIENDGVHYRITESNRLHINQANA-TDSGEYRCVASNSYTSD 209 (558)
Q Consensus 147 v~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~-~D~G~Y~C~a~N~~G~~ 209 (558)
+.|.|.+.|. |. |.+.|+++ ..+...........++++.+..... +|.|.|+|.+.|..+..
T Consensus 135 ~~l~C~~~g~~P~~~~v~W~~~-~~l~~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~~~ 199 (207)
T 1ypz_E 135 TNVACLVKDFYPKEVTISLRSS-KKIVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSETV 199 (207)
T ss_dssp TEEEEEEEEESSSCCEEEEECS-SEEEECCCEEEECTTSSEEEEECEEESSTTTCEEEEEETTEEE
T ss_pred CeEEEEEeeEeCCCeEEEEecC-CcccCCccceEEcCCCcEEEEEeecccCCCcEEEEEEECCccE
Confidence 6899999985 54 68999999 6665433333334566666655554 67899999999987653
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.02 E-value=7.3e-10 Score=105.25 Aligned_cols=133 Identities=12% Similarity=0.153 Sum_probs=85.6
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCc--eE-EEccCCeEEEccCCCCCCeEEEEEEEe
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV--HY-RITESNRLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~--~~-~~~~~~sL~I~~v~~~D~G~Y~C~a~N 204 (558)
.+|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+|+|..+..... +. ....+++|.|.+++.+|+|.|+|.+.|
T Consensus 6 ~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~ 83 (257)
T 1b6u_A 6 RKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSV 83 (257)
T ss_dssp CCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEEC
T ss_pred CCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEec
Confidence 3566666665 66889999999999975 5778999999865432100 00 011345799999999999999999987
Q ss_pred CCc-----eeeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCCcccccchhhhh
Q psy10160 205 SYT-----SDENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA 276 (558)
Q Consensus 205 ~~G-----~~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~ 276 (558)
..+ ..+..+.|.|.+....|.+...+. . .+.. +..+...|.+.+. ++.+.|++++...
T Consensus 84 ~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~---~-------~V~~---G~~vtL~C~~~~~-~~~~~w~k~g~~~ 146 (257)
T 1b6u_A 84 THSPYQLSAPSDPLDIVITGLYEKPSLSAQPG---P-------TVLA---GESVTLSCSSRSS-YDMYHLSREGEAH 146 (257)
T ss_dssp SSCTTSCCCCCCCEEEEEECSSCCCEEECSSC---T-------TCBT---TCEEEEEEECSSC-CSEEEEEETTSSC
T ss_pred cCCCccccccCCCEEEecccCCCCcceEccCC---C-------ccCC---CCEEEEEEeCCCC-CcEEEEEECCccc
Confidence 532 235677888876544444332221 0 1122 3334455555454 4688999987544
|
| >3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.9e-10 Score=108.83 Aligned_cols=135 Identities=19% Similarity=0.229 Sum_probs=82.6
Q ss_pred EEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEE--CCEE------------eccC---CceEEEcc----CCeEEEcc
Q psy10160 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYK--DGQV------------IEND---GVHYRITE----SNRLHINQ 189 (558)
Q Consensus 131 ~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~--~g~~------------l~~~---~~~~~~~~----~~sL~I~~ 189 (558)
.+...+....+.+|+.++|.|.+. .|.+.+.|+| .+.. .... ..|+.+.. +.+|.|.+
T Consensus 28 ~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~ 106 (268)
T 3pl6_D 28 GVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQR 106 (268)
T ss_dssp SCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECS
T ss_pred eeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECC
Confidence 344556677889999999999987 5888999998 2211 1111 03555543 45799999
Q ss_pred CCCCCCeEEEEEEEeC--CceeeEEEEEEEecc---CCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCC
Q psy10160 190 ANATDSGEYRCVASNS--YTSDENAVTIRVEGI---FIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLP 264 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N~--~G~~~~~~~l~V~~~---~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~ 264 (558)
++.+|+|.|.|.+.|. .+.......|.|... ..+|...... .. ...+.. +......|.+.|.++
T Consensus 107 v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~-~~-------~~~~~~---g~~v~L~C~~~g~~p 175 (268)
T 3pl6_D 107 TERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFE-PS-------EAEISH---TQKATLVCLATGFYP 175 (268)
T ss_dssp CCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEEC-CC-------HHHHHH---HSEEEEEEEEEEEBS
T ss_pred CCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeC-CC-------cccccC---CCceEEEEEECcccC
Confidence 9999999999999984 333344556777642 1122211000 00 000111 333445566657555
Q ss_pred C--cccccchhhhhh
Q psy10160 265 S--YGPHIKRAVEAE 277 (558)
Q Consensus 265 ~--~~~w~~~~l~~~ 277 (558)
+ .+.|++++....
T Consensus 176 ~~~~v~W~~~g~~l~ 190 (268)
T 3pl6_D 176 DHVELSWWVNGKEVH 190 (268)
T ss_dssp SCEEEEEEESSSEEC
T ss_pred CCeEEEEEECCEECC
Confidence 5 789999875543
|
| >1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H* | Back alignment and structure |
|---|
Probab=99.01 E-value=8.9e-10 Score=102.51 Aligned_cols=128 Identities=13% Similarity=0.162 Sum_probs=80.4
Q ss_pred CCceEeeCCCcEEEEeEeeccC--CCeEEEEECC--EEec----------------cCCceEEEcc-----CCeEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYP--IPQVFWYKDG--QVIE----------------NDGVHYRITE-----SNRLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~g--~~l~----------------~~~~~~~~~~-----~~sL~I~~v 190 (558)
+....+.+|+.++|.|.+.+.| .+.+.|+|.. ..+. ....|+.+.. +.+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (225)
T 1op3_H 7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM 86 (225)
T ss_dssp ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCC
Confidence 3456789999999999999887 7889999853 2110 0123555542 248999999
Q ss_pred CCCCCeEEEEEEEeCCc-----e---eeEEEEEEEecc-CCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCC
Q psy10160 191 NATDSGEYRCVASNSYT-----S---DENAVTIRVEGI-FIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAG 261 (558)
Q Consensus 191 ~~~D~G~Y~C~a~N~~G-----~---~~~~~~l~V~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g 261 (558)
+.+|+|.|.|.+.|..| . ....+.|.|... +.+|.+...+ ... .... +......|.+.|
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~--~~~-------~~~~---g~~v~L~C~~~g 154 (225)
T 1op3_H 87 RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLA--PSS-------KSTS---GGTAALGCLVKD 154 (225)
T ss_dssp CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEEC--CCT-------TCCC---CCEEEEEEEEEE
T ss_pred ChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEec--ccc-------cccC---CCcEEEEEEEEe
Confidence 99999999999999875 2 123457777652 1222221100 000 0111 333445565556
Q ss_pred C-CCC-cccccchhhh
Q psy10160 262 Q-LPS-YGPHIKRAVE 275 (558)
Q Consensus 262 ~-~~~-~~~w~~~~l~ 275 (558)
. |+| .+.|++++..
T Consensus 155 ~~P~p~~v~W~~~~~~ 170 (225)
T 1op3_H 155 YFPEPVTVSWNSGALT 170 (225)
T ss_dssp EBSSCCEEECCTTSCC
T ss_pred EECCCeEEEEecCCCc
Confidence 5 666 8999998754
|
| >1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.8e-09 Score=83.87 Aligned_cols=83 Identities=24% Similarity=0.311 Sum_probs=60.7
Q ss_pred CceEeeCCCcEEEEeEeec-cCCCeEEEEECC----EEeccCCc-eEEEcc-C----CeEEEccCCCCCCeEEEEEEEeC
Q psy10160 137 ETQVFGVGSDISIPCDVDG-YPIPQVFWYKDG----QVIENDGV-HYRITE-S----NRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g-~P~p~i~W~~~g----~~l~~~~~-~~~~~~-~----~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
....+..|+.+.|.|.+.+ .|+|.|+|.|.+ .++..... +....+ + ..|.|.+|..+|+|.|+|.|.|.
T Consensus 22 S~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~~ 101 (122)
T 1xau_A 22 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN 101 (122)
T ss_dssp EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEET
T ss_pred ccEEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEEcCCccEEEEeeCC
Confidence 3556789999999999966 689999999965 23322111 111111 1 26999999999999999999999
Q ss_pred Cceee-EEEEEEEec
Q psy10160 206 YTSDE-NAVTIRVEG 219 (558)
Q Consensus 206 ~G~~~-~~~~l~V~~ 219 (558)
.|... +++.|.|.+
T Consensus 102 ~g~ieSHs~ti~V~~ 116 (122)
T 1xau_A 102 SQVINSHSVTIHVRE 116 (122)
T ss_dssp TEEEECCCEEEEEC-
T ss_pred CCceeeeEEEEEEEe
Confidence 99874 667787754
|
| >3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=103.86 Aligned_cols=87 Identities=16% Similarity=0.196 Sum_probs=59.6
Q ss_pred ecCCceEeeCCCcEEEEeEeecc--CCCeEEEEECC--E--Eec-------------cCCceEEEccC-----CeEEEcc
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGY--PIPQVFWYKDG--Q--VIE-------------NDGVHYRITES-----NRLHINQ 189 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~--P~p~i~W~~~g--~--~l~-------------~~~~~~~~~~~-----~sL~I~~ 189 (558)
..+....+.+|+.++|.|.+.+. |.+.+.|+|.. . ... ....++.+..+ .+|.|.+
T Consensus 13 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 92 (257)
T 3gkz_A 13 QESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKS 92 (257)
T ss_dssp EEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred ECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECC
Confidence 34556678999999999999994 47889999832 1 110 01134554432 2699999
Q ss_pred CCCCCCeEEEEEEEeCC----ceeeEEEEEEEecc
Q psy10160 190 ANATDSGEYRCVASNSY----TSDENAVTIRVEGI 220 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N~~----G~~~~~~~l~V~~~ 220 (558)
++.+|+|.|.|.+.|.. +.....+.|.|..+
T Consensus 93 v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~ 127 (257)
T 3gkz_A 93 VSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGG 127 (257)
T ss_dssp CCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC--
T ss_pred CChhhCEEEEEEEecCCCcceeEEcCCEEEeecCc
Confidence 99999999999999972 22234567777654
|
| >4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D | Back alignment and structure |
|---|
Probab=99.00 E-value=5e-10 Score=105.56 Aligned_cols=87 Identities=21% Similarity=0.314 Sum_probs=62.1
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccCCCeEEEEE--------------CCEEeccCC---ceEEEccC----CeEEEccC
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYK--------------DGQVIENDG---VHYRITES----NRLHINQA 190 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~--------------~g~~l~~~~---~~~~~~~~----~sL~I~~v 190 (558)
+...+....+.+|+.++|.| ..+.|.+.+.|+| ++....... .++.+... .+|.|.++
T Consensus 5 v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v 83 (245)
T 4ei6_B 5 VLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPT 83 (245)
T ss_dssp CEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSC
T ss_pred eEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCC
Confidence 44556677889999999999 7788999999998 222222211 45555432 37999999
Q ss_pred CCCCCeEEEEEEEeC----CceeeEEEEEEEec
Q psy10160 191 NATDSGEYRCVASNS----YTSDENAVTIRVEG 219 (558)
Q Consensus 191 ~~~D~G~Y~C~a~N~----~G~~~~~~~l~V~~ 219 (558)
+.+|+|.|.|.+.|. .+.......|.|..
T Consensus 84 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~ 116 (245)
T 4ei6_B 84 ALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLE 116 (245)
T ss_dssp CGGGCEEEEEEEECSSTTCCCEECCCEEEEEES
T ss_pred CHhHCEEEEEEEccCCCcceEEEcCCcEEEEec
Confidence 999999999999963 23334455677754
|
| >3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=7.4e-10 Score=93.66 Aligned_cols=88 Identities=16% Similarity=0.240 Sum_probs=63.7
Q ss_pred EEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CE---EeccCCceEEEccCC---eEEEccCCCCCCeEEEEEE
Q psy10160 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQ---VIENDGVHYRITESN---RLHINQANATDSGEYRCVA 202 (558)
Q Consensus 131 ~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~---~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a 202 (558)
.+...+....+.+|+.++|.|.+.+. +.+.|+|+ +. .+.....+|.+..++ +|.|.+++.+|+|.|.|.+
T Consensus 19 ~v~q~p~~~~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~~~~~r~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a 96 (133)
T 3khq_A 19 QIWQHPRFAAKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQNIQYEDNGIYFCKQ 96 (133)
T ss_dssp SEEEECSEEEECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECCCTTTTEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred ceEEcCceEEEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEEEeCCCEEEEcCCCEEEEEECCCChHHCEEEEEEE
Confidence 34455677889999999999999987 88999987 32 222233466654433 6999999999999999999
Q ss_pred EeCCce----eeEEEEEEEecc
Q psy10160 203 SNSYTS----DENAVTIRVEGI 220 (558)
Q Consensus 203 ~N~~G~----~~~~~~l~V~~~ 220 (558)
.|..|. ......|.|.+.
T Consensus 97 ~n~~g~~~~~~g~gt~L~V~~~ 118 (133)
T 3khq_A 97 KCDSANHNVTDSCGTELLVLGF 118 (133)
T ss_dssp SSCC-------CCCEEEEEC--
T ss_pred EeCCCCcceeECCCEEEEEEec
Confidence 998763 234567888653
|
| >4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.6e-10 Score=89.31 Aligned_cols=85 Identities=22% Similarity=0.364 Sum_probs=59.9
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCC-----eEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIP-----QVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p-----~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~ 203 (558)
+|.+...+.. .+.+|+.|+|.|.+.+.|.+ .+.|+|+|..+.. ...+..|.|.+++.+|+|.|.|.+.
T Consensus 8 kP~l~~~p~~-~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~------~~~~~~l~i~~v~~~dsG~Y~C~~~ 80 (108)
T 4hwn_A 8 APILRAVPSA-EPQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQS------RGLSSEFQIPTASEDHSGSYWCEAA 80 (108)
T ss_dssp CCEEEEESCS-SCBTTCCEEEEEEC---------CCEEEEEETTEEEEE------EESCCEEEESSCCGGGCEEEEEEEE
T ss_pred CCEEEecCCC-cCCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCccC------CCcccEEEeCccCcccCeEEEEEEE
Confidence 4555555543 57899999999999876655 4999999987752 1245689999999999999999999
Q ss_pred eCCc---eeeEEEEEEEecc
Q psy10160 204 NSYT---SDENAVTIRVEGI 220 (558)
Q Consensus 204 N~~G---~~~~~~~l~V~~~ 220 (558)
|..| ..+..+.|.|.++
T Consensus 81 ~~~~~~~~~S~~l~L~V~g~ 100 (108)
T 4hwn_A 81 TEDNQVWKQSPQLEIRVQGA 100 (108)
T ss_dssp CTTSSSEEECCCEEECCBC-
T ss_pred eCCCceeccCCCEEEEEEec
Confidence 9865 3345566666543
|
| >1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ... | Back alignment and structure |
|---|
Probab=98.99 E-value=6.9e-10 Score=102.91 Aligned_cols=128 Identities=16% Similarity=0.229 Sum_probs=79.9
Q ss_pred CCceEeeCCCcEEEEeEeeccC--CCeEEEEECC--EE---ec---------------cCCceEEEcc-----CCeEEEc
Q psy10160 136 LETQVFGVGSDISIPCDVDGYP--IPQVFWYKDG--QV---IE---------------NDGVHYRITE-----SNRLHIN 188 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~g--~~---l~---------------~~~~~~~~~~-----~~sL~I~ 188 (558)
+....+.+|+.++|.|.+.+.| .+.+.|+|+. .. +. ....|+.+.. +.+|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 86 (222)
T 1q9r_B 7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN 86 (222)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred CCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence 3456788999999999999876 6789999843 11 10 0013555543 2389999
Q ss_pred cCCCCCCeEEEEEEEeCCc-----eeeEEEEEEEeccC-CCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCC
Q psy10160 189 QANATDSGEYRCVASNSYT-----SDENAVTIRVEGIF-IHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQ 262 (558)
Q Consensus 189 ~v~~~D~G~Y~C~a~N~~G-----~~~~~~~l~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~ 262 (558)
+++.+|+|.|.|.+.|..| .......|.|...+ .+|.+...+ . ...... +......|.+.|.
T Consensus 87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~---~------~~~~~~---g~~v~L~C~~~g~ 154 (222)
T 1q9r_B 87 TLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLA---P------GSAAQT---NSMVTLGCLVKGY 154 (222)
T ss_dssp SCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEEC---C------CSCCCC---SSEEEEEEEEEEE
T ss_pred cCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEcc---c------cccccC---CCcEEEEEEEccE
Confidence 9999999999999999765 22234567775421 122211100 0 000112 3334455666565
Q ss_pred -CCC-cccccchhhh
Q psy10160 263 -LPS-YGPHIKRAVE 275 (558)
Q Consensus 263 -~~~-~~~w~~~~l~ 275 (558)
|.| .+.|++++..
T Consensus 155 ~P~p~~v~W~~~g~~ 169 (222)
T 1q9r_B 155 FPEPVTVTWNSGSLS 169 (222)
T ss_dssp BSSCCEEEEGGGTBC
T ss_pred ECCCCEEEEecCCeE
Confidence 777 9999998654
|
| >1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... | Back alignment and structure |
|---|
Probab=98.99 E-value=8.2e-10 Score=101.32 Aligned_cols=146 Identities=12% Similarity=0.111 Sum_probs=83.6
Q ss_pred cCceeEEeccCCCCC----CcEEEEeCCcccCCCCc-----eeeccccc---------e---eeceeEEeeccceee--E
Q psy10160 63 YGTILSSAFPSESAS----PVVTQTTTTTTEATSPH-----VYAALTHC---------V---PWSNVCLFGARSGYL--K 119 (558)
Q Consensus 63 ~~~~~~~~~~~~~p~----p~v~W~~~~~~~~~~~~-----~~~g~~~~---------~---~~~~~~~~~~~~~~~--~ 119 (558)
++.+.+.|...+.++ +.|.|++++..+..... ...|.+.- . .-.|.|.+.+..+.. .
T Consensus 18 G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~~~ 97 (207)
T 1l6x_A 18 SRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIE 97 (207)
T ss_dssp TSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEE
T ss_pred CCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcceE
Confidence 446678898877652 48999999865433210 00111100 0 123566666654432 1
Q ss_pred Eeeec--eeeeCcEEEecCCceEeeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCC-ceEEEccCCe------EEEc
Q psy10160 120 ETQNG--GYLVPVKVNITLETQVFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDG-VHYRITESNR------LHIN 188 (558)
Q Consensus 120 ~~~~~--~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~-~~~~~~~~~s------L~I~ 188 (558)
..... .+..+|.+.+.+.......|+.+.|.|.+.|. |.+ .+.|+|+|..+.... .++....+++ |.|.
T Consensus 98 ~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~i~ 177 (207)
T 1l6x_A 98 KTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVD 177 (207)
T ss_dssp EEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEE
T ss_pred EEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEEEEEEEEC
Confidence 11111 23456666554433222356679999999995 543 899999999875321 1122234443 4454
Q ss_pred cCCCCCCeEEEEEEEeCCce
Q psy10160 189 QANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 189 ~v~~~D~G~Y~C~a~N~~G~ 208 (558)
....+|.|.|+|.|.|....
T Consensus 178 ~~~~~~~g~YtC~a~n~~l~ 197 (207)
T 1l6x_A 178 KSRWQQGNVFSCSVMHEALH 197 (207)
T ss_dssp HHHHHTTCCEEEEEECTTSG
T ss_pred HHHcCCCCEEEEEEEcCCcC
Confidence 44456899999999997643
|
| >3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A | Back alignment and structure |
|---|
Probab=98.98 E-value=8.6e-10 Score=104.59 Aligned_cols=87 Identities=17% Similarity=0.269 Sum_probs=61.9
Q ss_pred EecCCceEeeCCCcEEEEeEeeccC--CCeEEEEEC--CEEec----------------cCCceEEEccC-----CeEEE
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYP--IPQVFWYKD--GQVIE----------------NDGVHYRITES-----NRLHI 187 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~--g~~l~----------------~~~~~~~~~~~-----~sL~I 187 (558)
...+....+.+|+.++|.|.+.|.| .|.+.|+|. +..+. ....++.+..+ .+|.|
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 84 (253)
T 3uzq_A 5 LEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHL 84 (253)
T ss_dssp EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred EecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEe
Confidence 3456677889999999999999854 778999982 21110 00124544432 24999
Q ss_pred ccCCCCCCeEEEEEEEeCCcee-eEEEEEEEec
Q psy10160 188 NQANATDSGEYRCVASNSYTSD-ENAVTIRVEG 219 (558)
Q Consensus 188 ~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~ 219 (558)
.+++.+|+|.|.|.+.|..+.. .....|.|..
T Consensus 85 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~ 117 (253)
T 3uzq_A 85 SSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSA 117 (253)
T ss_dssp CSCCGGGCEEEEEEECSSSCCEECCCEEEEECS
T ss_pred CCCCcccCEEEEEEEeeCCccEECCCcEEEEec
Confidence 9999999999999999976655 3556777764
|
| >1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=98.97 E-value=7.3e-10 Score=103.54 Aligned_cols=66 Identities=18% Similarity=0.371 Sum_probs=47.8
Q ss_pred EeeCCCcEEEEeEeecc-CC-CeEEEEE-CCEEeccC--------CceEEEccCCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 140 VFGVGSDISIPCDVDGY-PI-PQVFWYK-DGQVIEND--------GVHYRITESNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 140 ~v~~G~~v~L~C~~~g~-P~-p~i~W~~-~g~~l~~~--------~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
.+.+|+.+.|.|.+.|. |. +.+.|++ +|..+... +..|.. ...|.|.+... | |.|+|.+.|..+.
T Consensus 141 ~v~~g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~--~s~L~i~~~~~-~-~~ytC~v~~~~~~ 216 (230)
T 1ypz_F 141 ETNLHKTGTYLCLLEAFFPDVIRVYWKEKDGNTILDSQEGDTLKTNDTYMK--FSWLTVPERAM-G-KEHRCIVKHENNK 216 (230)
T ss_dssp HHHHHSCEEEEEEEEEESSCCCEEEEECTTSSCBCCCEECCCEEETTEEEE--EEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred hhccCCcceEEEEEeeecCCCeEEEEEccCCeEccccccceeecCCCCEEE--EEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence 35678999999999987 76 5899999 77666421 112221 13688888775 5 9999999998765
Q ss_pred e
Q psy10160 209 D 209 (558)
Q Consensus 209 ~ 209 (558)
.
T Consensus 217 ~ 217 (230)
T 1ypz_F 217 G 217 (230)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.7e-09 Score=86.60 Aligned_cols=74 Identities=20% Similarity=0.326 Sum_probs=56.4
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCCCeEEEEECC--E---Eec--------cCCceEEEccC---CeEEEccCCCCCCe
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG--Q---VIE--------NDGVHYRITES---NRLHINQANATDSG 196 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g--~---~l~--------~~~~~~~~~~~---~sL~I~~v~~~D~G 196 (558)
...|....+.+|+.++|.|.+.+.|.|.+.|+|+. . .+. ....++.+... .+|.|.+++.+|+|
T Consensus 5 ~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG 84 (108)
T 1jhl_L 5 TQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFA 84 (108)
T ss_dssp EEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCS
T ss_pred eccCCeeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 34566778899999999999999999999999853 1 111 01235554322 37999999999999
Q ss_pred EEEEEEEeCC
Q psy10160 197 EYRCVASNSY 206 (558)
Q Consensus 197 ~Y~C~a~N~~ 206 (558)
.|.|.+.|..
T Consensus 85 ~Y~C~~~n~~ 94 (108)
T 1jhl_L 85 MYICQQHNEY 94 (108)
T ss_dssp EEEEEECSSS
T ss_pred EEEEEEccCC
Confidence 9999999974
|
| >3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H | Back alignment and structure |
|---|
Probab=98.97 E-value=8.6e-10 Score=102.72 Aligned_cols=68 Identities=16% Similarity=0.341 Sum_probs=46.7
Q ss_pred eeCCCcEEEEeEeecc-C-CCeEEEEECCEEecc----------CCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 141 FGVGSDISIPCDVDGY-P-IPQVFWYKDGQVIEN----------DGVHYRITESNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~-P-~p~i~W~~~g~~l~~----------~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
+.+|+.+.|.|.+.+. | .+.+.| ++..+.. .+..|.+ .++|.|.+...+| |.|+|.+.|..+.
T Consensus 141 ~~~g~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~~-~~ytC~v~h~~~~ 215 (226)
T 3mlr_H 141 STSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSL--SSVVTVPSSSLGT-QTYICNVNHKPSN 215 (226)
T ss_dssp STTSSEEEEEEEEEEEBSSCCEEEE--GGGTCCTTEEECCCEECTTSCEEE--EEEEEEEGGGTTT-CCCEEEEEEGGGT
T ss_pred ccCCCCEEEEEEEEEEECCCeEEEE--CCccccCCeEeCCcEECCCCCEEE--EEEEEECHhHcCC-CeEEEEEEECCCC
Confidence 4579999999999885 4 346999 4433221 1112222 1368999999899 9999999998876
Q ss_pred eeEEE
Q psy10160 209 DENAV 213 (558)
Q Consensus 209 ~~~~~ 213 (558)
.....
T Consensus 216 ~~~~~ 220 (226)
T 3mlr_H 216 TKVDK 220 (226)
T ss_dssp EEEEE
T ss_pred cCeEE
Confidence 55433
|
| >1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A | Back alignment and structure |
|---|
Probab=98.97 E-value=7.5e-10 Score=104.53 Aligned_cols=89 Identities=18% Similarity=0.277 Sum_probs=63.2
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccC-----CCeEEEEECC--EE---ecc--------CCceEEEcc---CCeEEEccC
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYP-----IPQVFWYKDG--QV---IEN--------DGVHYRITE---SNRLHINQA 190 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P-----~p~i~W~~~g--~~---l~~--------~~~~~~~~~---~~sL~I~~v 190 (558)
+...+....+.+|+.++|.|.+.+.| .|.+.|+|+. .. +.. ...++.+.. ..+|.|.++
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 83 (247)
T 1svz_A 4 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV 83 (247)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred EEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCC
Confidence 34456778899999999999999988 6899999842 11 110 123555432 237999999
Q ss_pred CCCCCeEEEEEEEeCCcee-eEEEEEEEecc
Q psy10160 191 NATDSGEYRCVASNSYTSD-ENAVTIRVEGI 220 (558)
Q Consensus 191 ~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~ 220 (558)
+.+|+|.|.|.+.|..+.. ...+.|.|..+
T Consensus 84 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~ 114 (247)
T 1svz_A 84 EAEDLGIYYCFQGSHFPPTFGGGTKLEIKGG 114 (247)
T ss_dssp CGGGCEEEEEEECSSSSCEECCCEEEEEC--
T ss_pred CHHHCEEEEEEEccCCccEECCCEEEEEECC
Confidence 9999999999999986642 23457777654
|
| >2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.8e-10 Score=106.41 Aligned_cols=129 Identities=16% Similarity=0.196 Sum_probs=79.2
Q ss_pred CCceEeeCCCcEEEEeEeeccCC-C-eEEEEECC--EEe---c--------cCCceEEEcc---CCeEEEccCCCCCCeE
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPI-P-QVFWYKDG--QVI---E--------NDGVHYRITE---SNRLHINQANATDSGE 197 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~-p-~i~W~~~g--~~l---~--------~~~~~~~~~~---~~sL~I~~v~~~D~G~ 197 (558)
+....+.+|+.++|.|.+.+.|. + .+.|+|++ ..+ . ....++.... +.+|.|.+++.+|+|.
T Consensus 26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 105 (234)
T 2j6e_L 26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD 105 (234)
T ss_dssp CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence 56677899999999999998654 4 69999863 211 0 0123454432 2379999999999999
Q ss_pred EEEEEEeCCce---eeEEEEEEEeccC-CCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCCC--cccccc
Q psy10160 198 YRCVASNSYTS---DENAVTIRVEGIF-IHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPS--YGPHIK 271 (558)
Q Consensus 198 Y~C~a~N~~G~---~~~~~~l~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~~--~~~w~~ 271 (558)
|.|.+.|..+. ....+.|.|...+ .+|.+...+. . ... ..|.... ..|.+.|.+++ .+.|++
T Consensus 106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~--~-~~~------~~g~~v~---L~C~~~g~~p~~~~v~W~k 173 (234)
T 2j6e_L 106 YYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPP--S-SEE------LQANKAT---LVCLISDFFPGAVTVAWKA 173 (234)
T ss_dssp EEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECC--C-HHH------HTTSCCC---EEECCCBCSSCCCEEEEEE
T ss_pred EEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCC--C-hhH------hcCCceE---EEEEEEEEcCCceEEEEEE
Confidence 99999999882 2234556663322 2333221110 0 000 1122233 55666665443 799999
Q ss_pred hhhhh
Q psy10160 272 RAVEA 276 (558)
Q Consensus 272 ~~l~~ 276 (558)
++...
T Consensus 174 ~g~~l 178 (234)
T 2j6e_L 174 DGAPV 178 (234)
T ss_dssp TTEEC
T ss_pred CCEEC
Confidence 87654
|
| >1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-09 Score=95.67 Aligned_cols=77 Identities=12% Similarity=0.255 Sum_probs=51.2
Q ss_pred EEEecCCceEeeCCCcEEEEeEeec-cCCC--eEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 131 KVNITLETQVFGVGSDISIPCDVDG-YPIP--QVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 131 ~~~~~~~~~~v~~G~~v~L~C~~~g-~P~p--~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
.+.+.+.+..+.+|+.++|.|.+.| .|.+ .|.|+|++..+.... ......+.+|.+.....+|.+.|+|+|.|..+
T Consensus 88 ~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~-~~~~~~~~tl~~~~~reD~g~~~sC~A~~~l~ 166 (185)
T 1iam_A 88 RVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP-AVGEPAEVTTTVLVRRDHHGAQFSCRTELDLR 166 (185)
T ss_dssp EEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE-CCTTTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred CCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEccccc-CCCccccEEEEEeceeccCCCeEEEEEEecCc
Confidence 3444555556889999999999988 4554 489999999886421 00001122577654444445599999999877
Q ss_pred e
Q psy10160 208 S 208 (558)
Q Consensus 208 ~ 208 (558)
.
T Consensus 167 ~ 167 (185)
T 1iam_A 167 P 167 (185)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-09 Score=102.26 Aligned_cols=123 Identities=18% Similarity=0.292 Sum_probs=78.6
Q ss_pred cCCceEeeCCCcEEEEeEeeccC--CCeEEEEEC--CEEec----------------cCCceEEEcc-----CCeEEEcc
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYP--IPQVFWYKD--GQVIE----------------NDGVHYRITE-----SNRLHINQ 189 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~--g~~l~----------------~~~~~~~~~~-----~~sL~I~~ 189 (558)
.|....+.+|+.++|.|.+.|.| .|.+.|+|+ +..+. ....|+.+.. ..+|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (256)
T 1nqb_A 6 QSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSS 85 (256)
T ss_dssp ECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred CCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECc
Confidence 35567889999999999999986 678999984 22210 0123555443 23799999
Q ss_pred CCCCCCeEEEEEEEeCCce-----eeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCC
Q psy10160 190 ANATDSGEYRCVASNSYTS-----DENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLP 264 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N~~G~-----~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~ 264 (558)
++.+|+|.|.|.+.|..|. ....+.|.|..+ |.+...| ..+ .+..| ....+.|.+.+.++
T Consensus 86 v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~---~~v~~~p----~~~-----~v~~G---~~v~L~C~~~~~~~ 150 (256)
T 1nqb_A 86 LTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSD---IELTQTP----LSL-----PVSLG---DQASISCRSSQSIV 150 (256)
T ss_dssp CCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCC---CCEEEEC----SEE-----EECTT---CCEEEEEEESSCCB
T ss_pred CChhhCEEEEEEEeeccCccceeEEcCceeeeeccc---ccEEecC----cEE-----EEecC---CcEEEEeEecCccc
Confidence 9999999999999998763 223466777432 2111111 111 12233 33345555667776
Q ss_pred C-----cccccch
Q psy10160 265 S-----YGPHIKR 272 (558)
Q Consensus 265 ~-----~~~w~~~ 272 (558)
+ .+.|+++
T Consensus 151 ~~~~~~~v~W~k~ 163 (256)
T 1nqb_A 151 HSNGNTYLEWYLQ 163 (256)
T ss_dssp CTTSCBCEEEEEE
T ss_pred ccccceEEEEEEE
Confidence 5 8999994
|
| >3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.8e-09 Score=103.59 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=28.9
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQ 48 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~ 48 (558)
.+.+|.|.+++.+|+|.|+|.+.|..+... ...+.|.
T Consensus 252 g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~ 289 (401)
T 3f8u_B 252 GNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVY 289 (401)
T ss_dssp EEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeec
Confidence 567999999999999999999999776543 3344443
|
| >3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D | Back alignment and structure |
|---|
Probab=98.94 E-value=1.9e-09 Score=102.39 Aligned_cols=126 Identities=15% Similarity=0.223 Sum_probs=78.5
Q ss_pred CCceEeeCCCcEEEEeEeeccC--CCeEEEEECC--EEec----------------cCCceEEEccC-----CeEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYP--IPQVFWYKDG--QVIE----------------NDGVHYRITES-----NRLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~g--~~l~----------------~~~~~~~~~~~-----~sL~I~~v 190 (558)
+....+.+|+.++|.|.+.+.| .+.+.|+|.. ..+. ....++.+..+ .+|.|.++
T Consensus 9 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 88 (256)
T 3umt_A 9 SGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSL 88 (256)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred cCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCC
Confidence 3456689999999999999976 6789999732 1110 01124544432 24999999
Q ss_pred CCCCCeEEEEEEEeC----CceeeEEEEEEEeccCC-------------CCCCCCCCccccceeEEeceeeecccceeEE
Q psy10160 191 NATDSGEYRCVASNS----YTSDENAVTIRVEGIFI-------------HPSCRDLPLFANCKLIVEGRYCQHHYYSQFC 253 (558)
Q Consensus 191 ~~~D~G~Y~C~a~N~----~G~~~~~~~l~V~~~~~-------------~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 253 (558)
+.+|+|.|.|.+.|. .+.....+.|.|...+. +|.+...+ . . ..+..| ..+
T Consensus 89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p---~-~-----~~v~~G---~~v 156 (256)
T 3umt_A 89 TSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSP---S-S-----LSASLG---ERV 156 (256)
T ss_dssp CGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEEC---S-E-----EEECTT---CCE
T ss_pred CcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCC---C-e-----EEEECC---CCE
Confidence 999999999999998 33344556777764210 11111111 0 0 112333 334
Q ss_pred EEeccCCCCCCCcccccchh
Q psy10160 254 CESCTRAGQLPSYGPHIKRA 273 (558)
Q Consensus 254 c~~~~~~g~~~~~~~w~~~~ 273 (558)
.+.|.+.+.+.+.+.|+++.
T Consensus 157 ~L~C~~~~~~~~~v~W~k~~ 176 (256)
T 3umt_A 157 SITCRASQDIGSNLNWLQQK 176 (256)
T ss_dssp EEEEEESSCCTTCEEEEEEC
T ss_pred EEEEEEecCCCcEEEEEEEC
Confidence 45566667888899999853
|
| >1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.5e-09 Score=99.00 Aligned_cols=128 Identities=16% Similarity=0.225 Sum_probs=80.0
Q ss_pred CCceEeeCCCcEEEEeEeeccC--CCeEEEEECC--EE---e-c--c---C---------CceEEEcc---C--CeEEEc
Q psy10160 136 LETQVFGVGSDISIPCDVDGYP--IPQVFWYKDG--QV---I-E--N---D---------GVHYRITE---S--NRLHIN 188 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~g--~~---l-~--~---~---------~~~~~~~~---~--~sL~I~ 188 (558)
+....+.+|+.++|.|.+.+.| .+.+.|+|++ .. + . . . ..|+.+.. . .+|.|.
T Consensus 7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 86 (220)
T 1pz5_B 7 SGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMN 86 (220)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred cCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEc
Confidence 4566789999999999999877 7889999853 11 1 0 0 0 13555432 2 289999
Q ss_pred cCCCCCCeEEEEEEEeCCcee---eEEEEEEEecc-CCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCC-C
Q psy10160 189 QANATDSGEYRCVASNSYTSD---ENAVTIRVEGI-FIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQ-L 263 (558)
Q Consensus 189 ~v~~~D~G~Y~C~a~N~~G~~---~~~~~l~V~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~-~ 263 (558)
+++.+|+|.|.|.+.|..+.. ...+.|.|... +.+|.+...+ . ......|.... ..|.+.|. |
T Consensus 87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~---~------~~~~~~g~~v~---L~C~~~g~~P 154 (220)
T 1pz5_B 87 NLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLV---P------GCSDTSGSSVT---LGCLVKGYFP 154 (220)
T ss_dssp SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEEC---C------CSCCSCSSSEE---EEEEEEEEBS
T ss_pred cCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcc---c------ccccCCCCcEE---EEEEEEEEeC
Confidence 999999999999999986432 13456777532 1222211100 0 00112222333 45555576 8
Q ss_pred CC-cccccchhhh
Q psy10160 264 PS-YGPHIKRAVE 275 (558)
Q Consensus 264 ~~-~~~w~~~~l~ 275 (558)
.| .+.|++++..
T Consensus 155 ~p~~v~W~~~~~~ 167 (220)
T 1pz5_B 155 EPVTVKWNYGALS 167 (220)
T ss_dssp SCCEEEEGGGTCC
T ss_pred CCeEEEEecCCcc
Confidence 88 9999998753
|
| >3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ... | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-09 Score=101.56 Aligned_cols=128 Identities=16% Similarity=0.270 Sum_probs=79.6
Q ss_pred CCceEeeCCCcEEEEeEeeccCC----CeEEEEEC--CEEe----c-----------cCCceEEEcc-----CCeEEEcc
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPI----PQVFWYKD--GQVI----E-----------NDGVHYRITE-----SNRLHINQ 189 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~----p~i~W~~~--g~~l----~-----------~~~~~~~~~~-----~~sL~I~~ 189 (558)
+....+.+|+.++|.|.+.+.|. +.+.|+|. +..+ . ....|+.+.. +.+|.|.+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 86 (228)
T 3bae_H 7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS 86 (228)
T ss_dssp ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence 45567899999999999999885 88999984 2211 0 0123555542 25899999
Q ss_pred CCCCCCeEEEEEEEeCCc------e---eeEEEEEEEecc-CCCCCCCCCCccccceeEEeceeeecccceeEEEEeccC
Q psy10160 190 ANATDSGEYRCVASNSYT------S---DENAVTIRVEGI-FIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTR 259 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N~~G------~---~~~~~~l~V~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~ 259 (558)
++.+|+|.|.|.+.|..| . ....+.|.|... +.+|.+...+ ... .+.. +......|.+
T Consensus 87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~--~~~-------~~~~---g~~~~l~C~~ 154 (228)
T 3bae_H 87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLA--PVC-------GDTT---GSSVTLGCLV 154 (228)
T ss_dssp CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEEC--C------------C---CSEEEEEEEE
T ss_pred CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEec--ccc-------cccC---CCCEEEEEEE
Confidence 999999999999999875 1 113367777631 1222221100 000 0112 3334455656
Q ss_pred CCC-CCC-cccccchhhh
Q psy10160 260 AGQ-LPS-YGPHIKRAVE 275 (558)
Q Consensus 260 ~g~-~~~-~~~w~~~~l~ 275 (558)
.|. |.| .+.|++++..
T Consensus 155 ~g~~P~p~~v~W~~~~~~ 172 (228)
T 3bae_H 155 KGYFPEPVTLTWNSGSLS 172 (228)
T ss_dssp EEEBSSCCEEEEGGGTCC
T ss_pred ccEeCCCEEEEEeeCCcc
Confidence 565 667 8999998654
|
| >4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.1e-09 Score=88.01 Aligned_cols=82 Identities=16% Similarity=0.264 Sum_probs=61.2
Q ss_pred CCceEeeCCCcEEEEeEeeccCCC---eEEEEECCEE-----------ecc-----CCceEEEcc------CCeEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIP---QVFWYKDGQV-----------IEN-----DGVHYRITE------SNRLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p---~i~W~~~g~~-----------l~~-----~~~~~~~~~------~~sL~I~~v 190 (558)
+.......|++++|.|.+...+.+ .+.|+|++.. ... -..|..+.. +.+|.|.++
T Consensus 12 ~~~v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~~v 91 (125)
T 4gos_A 12 TVASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKNV 91 (125)
T ss_dssp EECEEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEESSC
T ss_pred CceEEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEECCC
Confidence 345667889999999998755443 5899986521 110 012333322 247999999
Q ss_pred CCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 191 NATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 191 ~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
+.+|+|.|.|.+.|..|..+..+.|+|
T Consensus 92 ~~~D~G~Y~C~v~~~~g~~~~~v~LkV 118 (125)
T 4gos_A 92 QLTDAGTYKCYIITSKGKGNANLEYKT 118 (125)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred ChHHCEEEEEEEEeCCCeEEEEEEEEE
Confidence 999999999999999999999999998
|
| >3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-09 Score=103.47 Aligned_cols=86 Identities=16% Similarity=0.243 Sum_probs=60.2
Q ss_pred CCceEeeCCCcEEEEeEeecc--CCCeEEEEECC--EEec---c--------CCceEEEccC---CeEEEccCCCCCCeE
Q psy10160 136 LETQVFGVGSDISIPCDVDGY--PIPQVFWYKDG--QVIE---N--------DGVHYRITES---NRLHINQANATDSGE 197 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~--P~p~i~W~~~g--~~l~---~--------~~~~~~~~~~---~sL~I~~v~~~D~G~ 197 (558)
+....+.+|+.++|.|.+.+. |.|.+.|+|.+ .... . ...++.+... .+|.|.+++.+|+|.
T Consensus 9 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~ 88 (256)
T 3ux9_B 9 PPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEAD 88 (256)
T ss_dssp CSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred CCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEE
Confidence 445778999999999999987 88899999842 1110 0 1224544332 279999999999999
Q ss_pred EEEEEEeCCcee---eEEEEEEEeccC
Q psy10160 198 YRCVASNSYTSD---ENAVTIRVEGIF 221 (558)
Q Consensus 198 Y~C~a~N~~G~~---~~~~~l~V~~~~ 221 (558)
|.|.+.|..+.. ...+.|.|..++
T Consensus 89 Y~C~~~~~~~~~~~~~~~~~l~V~~~~ 115 (256)
T 3ux9_B 89 YYCQVRDNNENEWVFGGGTKLTVLGSG 115 (256)
T ss_dssp EEEEEEETTTTEEEECCCEEEEEC---
T ss_pred EEEEEEECCCCceEECCCEEEEEECCC
Confidence 999999976532 344677776543
|
| >2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.1e-10 Score=89.99 Aligned_cols=86 Identities=13% Similarity=0.281 Sum_probs=61.6
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEc-cCCeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT-ESNRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
.|.+...+.. .+.+|++|+|.|.+.+. .+.+.|+|+|..+... ++... .+.+|.|.+++.+|+|.|.|.+.|...
T Consensus 5 kP~i~~~p~~-~v~~G~~VtL~C~~~~~-~~~~~w~k~g~~~~~~--~~~~~~~~~~l~I~~v~~~dsG~Y~C~~~n~~~ 80 (105)
T 2vsd_A 5 QPSLSLHPSQ-GVSLGDTVTLRCHLPRM-AAWVQLWLNGTLRFDK--EKDKEQDAAEFSFAVTNLEDAGTYQCRYQVSEP 80 (105)
T ss_dssp CCEEEEESCS-SCCTTCEEEEEEECCSS-CEEEEEEETTEEEEEE--EECTTCSEEEEEEECCSGGGCEEEEEEEEEETT
T ss_pred CCEEEeCCCC-CcCcCCCEEEEEEcCCC-CcEEEEEECCccceee--eccCCCCEEEEEECCCCHHHCeEEEEEEEcCCC
Confidence 4566666665 68899999999999875 4679999999765421 11111 224799999999999999999999642
Q ss_pred ----eeeEEEEEEEe
Q psy10160 208 ----SDENAVTIRVE 218 (558)
Q Consensus 208 ----~~~~~~~l~V~ 218 (558)
..+..+.|.|.
T Consensus 81 ~~~s~~Sdpl~L~V~ 95 (105)
T 2vsd_A 81 LWTSNQSDPVELVLT 95 (105)
T ss_dssp EEECCCCCCEEECCC
T ss_pred CcccCCCCCEEEEEE
Confidence 22445566654
|
| >1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-09 Score=102.27 Aligned_cols=132 Identities=11% Similarity=0.175 Sum_probs=80.9
Q ss_pred EEecCCceEeeCCCcEEEEeEeecc--CCCeEEEEECC--EE---ec------------c-CCceEEEcc-----CCeEE
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGY--PIPQVFWYKDG--QV---IE------------N-DGVHYRITE-----SNRLH 186 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~--P~p~i~W~~~g--~~---l~------------~-~~~~~~~~~-----~~sL~ 186 (558)
+...+....+.+|+.++|.|.+.+. +.+.+.|+|.. .. +. . ...|+.+.. +.+|.
T Consensus 4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 83 (242)
T 1hxm_B 4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT 83 (242)
T ss_dssp EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred cCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEE
Confidence 4445667788999999999999886 67889999842 11 10 0 224665542 34799
Q ss_pred EccCCCCCCeEEEEEEEeCCc-e------eeEEEEEEEeccCC----CCCCCCCCccccceeEEeceeeecccceeEEEE
Q psy10160 187 INQANATDSGEYRCVASNSYT-S------DENAVTIRVEGIFI----HPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCE 255 (558)
Q Consensus 187 I~~v~~~D~G~Y~C~a~N~~G-~------~~~~~~l~V~~~~~----~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~ 255 (558)
|.+++.+|+|.|.|.+.|..+ . ....+.|.|...+. +|...... .... .+..|.....
T Consensus 84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~-p~~~-------~~~~g~~v~L--- 152 (242)
T 1hxm_B 84 IHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFL-PSIA-------ETKLQKAGTY--- 152 (242)
T ss_dssp ECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCC-CCGG-------GGGSSSCEEE---
T ss_pred ECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEEC-CChh-------hcccCCCceE---
Confidence 999999999999999998631 1 12345777865322 22211111 0100 0122333444
Q ss_pred eccCCCC-CC-Ccccccchhh
Q psy10160 256 SCTRAGQ-LP-SYGPHIKRAV 274 (558)
Q Consensus 256 ~~~~~g~-~~-~~~~w~~~~l 274 (558)
.|.+.|. |. +.+.|++++.
T Consensus 153 ~C~~~g~~P~~~~v~W~~~~~ 173 (242)
T 1hxm_B 153 LCLLEKFFPDVIKIHWEEKKS 173 (242)
T ss_dssp EEEEEEESSCCEEEEEEESSS
T ss_pred EEEEeeEECCCeEEEEEcCCC
Confidence 4445465 43 6899999875
|
| >1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ... | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-09 Score=101.31 Aligned_cols=129 Identities=15% Similarity=0.171 Sum_probs=78.5
Q ss_pred cCCceEeeCCCcEEEEeEeeccC--CCeEEEEECC--EE---e---cc----------CCceEEEcc-----CCeEEEcc
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYP--IPQVFWYKDG--QV---I---EN----------DGVHYRITE-----SNRLHINQ 189 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~g--~~---l---~~----------~~~~~~~~~-----~~sL~I~~ 189 (558)
.+....+.+|+.++|.|.+.+.| .+.+.|+|++ .. + .. -..|+.+.. +.+|.|.+
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (227)
T 1mju_H 6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS 85 (227)
T ss_dssp CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred CCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECC
Confidence 34566789999999999999987 6889999853 21 1 10 023555532 34899999
Q ss_pred CCCCCCeEEEEEEEeCCcee-eEEEEEEEecc-CCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCC-CCC-
Q psy10160 190 ANATDSGEYRCVASNSYTSD-ENAVTIRVEGI-FIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQ-LPS- 265 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~-~~~- 265 (558)
++.+|+|.|.|.+.|..+.. ...+.|.|... +.+|.+.... .. ..+..|.... ..|.+.|. |.+
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~---~~------~~~~~g~~v~---L~C~~~g~~P~p~ 153 (227)
T 1mju_H 86 LTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLA---PV------CGDTSGSSVT---LGCLVKGYFPEPV 153 (227)
T ss_dssp CCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEEC---CC------C------CEE---EEEEEEEEBSSCC
T ss_pred CCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEec---CC------ccccCCCcEE---EEEEeecEeCCCe
Confidence 99999999999999974322 23457777642 1222211100 00 0112222333 45555564 666
Q ss_pred cccccchhhh
Q psy10160 266 YGPHIKRAVE 275 (558)
Q Consensus 266 ~~~w~~~~l~ 275 (558)
.+.|++++..
T Consensus 154 ~v~W~~~g~~ 163 (227)
T 1mju_H 154 TLTWNSGSLS 163 (227)
T ss_dssp EEEEGGGTBC
T ss_pred EEEEecCCCc
Confidence 8999998754
|
| >2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-09 Score=104.54 Aligned_cols=91 Identities=16% Similarity=0.273 Sum_probs=65.6
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeeccC------CCeEEEEEC--CEEe---c--------cCCceEEEcc---CCeEEE
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDGYP------IPQVFWYKD--GQVI---E--------NDGVHYRITE---SNRLHI 187 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g~P------~p~i~W~~~--g~~l---~--------~~~~~~~~~~---~~sL~I 187 (558)
+.+...|....+.+|+.++|.|.+.+.| .|.+.|+|+ +..+ . ....|+.+.. ..+|.|
T Consensus 6 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I 85 (264)
T 2gjj_A 6 IVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTI 85 (264)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred cceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEE
Confidence 3445567778899999999999999988 678999984 2211 1 0123555432 238999
Q ss_pred ccCCCCCCeEEEEEEEeCCcee-eEEEEEEEecc
Q psy10160 188 NQANATDSGEYRCVASNSYTSD-ENAVTIRVEGI 220 (558)
Q Consensus 188 ~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~ 220 (558)
.+++.+|+|.|.|.+.|..+.. ...+.|.|..+
T Consensus 86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~ 119 (264)
T 2gjj_A 86 GSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRG 119 (264)
T ss_dssp SSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC
T ss_pred CCCCHHHCEEEEEEEecCCccEecCCEEEEEEcC
Confidence 9999999999999999986532 23457777654
|
| >1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H | Back alignment and structure |
|---|
Probab=98.92 E-value=2.3e-09 Score=99.61 Aligned_cols=127 Identities=15% Similarity=0.215 Sum_probs=78.5
Q ss_pred CceEeeCCCcEEEEeEeeccC--CCeEEEEECC--EE---ec-------------cCCceEEEcc-----CCeEEEccCC
Q psy10160 137 ETQVFGVGSDISIPCDVDGYP--IPQVFWYKDG--QV---IE-------------NDGVHYRITE-----SNRLHINQAN 191 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~g--~~---l~-------------~~~~~~~~~~-----~~sL~I~~v~ 191 (558)
....+.+|+.++|.|.+.+.| .+.+.|+|.. .. +. ....|+.+.. +.+|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 87 (223)
T 1dee_B 8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLR 87 (223)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCC
Confidence 467789999999999999876 4789999843 11 10 0123555543 2379999999
Q ss_pred CCCCeEEEEEEEeCCc----e--eeEEEEEEEec-cCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCC-C
Q psy10160 192 ATDSGEYRCVASNSYT----S--DENAVTIRVEG-IFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQ-L 263 (558)
Q Consensus 192 ~~D~G~Y~C~a~N~~G----~--~~~~~~l~V~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~-~ 263 (558)
.+|+|.|.|.+.|..| . ....+.|.|.. ++.+|.+...+ . ...... +......|.+.|. |
T Consensus 88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~--~-------~~~~~~---g~~v~L~C~~~g~~P 155 (223)
T 1dee_B 88 AEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLV--S-------CENSNP---SSTVAVGCLAQDFLP 155 (223)
T ss_dssp GGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEE--C-------TTCCCS---SSEEEEEEEEEEEBS
T ss_pred HHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEec--C-------CcccCC---CCcEEEEEEEEEEeC
Confidence 9999999999999763 1 12345778863 22222221100 0 001112 3334455655566 6
Q ss_pred CC-cccccc-hhhh
Q psy10160 264 PS-YGPHIK-RAVE 275 (558)
Q Consensus 264 ~~-~~~w~~-~~l~ 275 (558)
+| .+.|++ ++..
T Consensus 156 ~p~~v~W~~~~g~~ 169 (223)
T 1dee_B 156 DSITFSWKYKNNSD 169 (223)
T ss_dssp SCCEEEEEETTSCB
T ss_pred CCeEEEeEccCCCc
Confidence 66 899999 6544
|
| >1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.7e-09 Score=88.94 Aligned_cols=87 Identities=18% Similarity=0.365 Sum_probs=64.0
Q ss_pred EecCCceEeeCCCcEEEEeEeec---cCCCeEEEEECCEEe-----cc----------------------C--CceEEEc
Q psy10160 133 NITLETQVFGVGSDISIPCDVDG---YPIPQVFWYKDGQVI-----EN----------------------D--GVHYRIT 180 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g---~P~p~i~W~~~g~~l-----~~----------------------~--~~~~~~~ 180 (558)
...+....+.+|+.++|.|.+.+ .|.+.+.|+|.+... .. . ..|+.+.
T Consensus 8 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~ 87 (135)
T 1xt5_A 8 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVA 87 (135)
T ss_dssp ECSCSEEEEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEES
T ss_pred eCCCceEEEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEEe
Confidence 34556778899999999999764 678899999864321 00 0 0344443
Q ss_pred c--CCeEEEccCCCCCCeEEEEEEEeC-----CceeeEEEEEEEec
Q psy10160 181 E--SNRLHINQANATDSGEYRCVASNS-----YTSDENAVTIRVEG 219 (558)
Q Consensus 181 ~--~~sL~I~~v~~~D~G~Y~C~a~N~-----~G~~~~~~~l~V~~ 219 (558)
. +.+|.|.+++.+|+|.|.|.+.|. .|.....+.|.|.+
T Consensus 88 ~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~g~~~~~~~L~V~g 133 (135)
T 1xt5_A 88 NLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTG 133 (135)
T ss_dssp CTTSCCEEECSCCGGGCEEEEEEEECSSCCSGGGEEEEEEEEEEET
T ss_pred cCCCCeEEECCCChhhCcEEEEEEEcCCccccccccceeEEEEEec
Confidence 3 358999999999999999999995 34556888888865
|
| >1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-10 Score=105.99 Aligned_cols=68 Identities=12% Similarity=0.331 Sum_probs=46.8
Q ss_pred EeeCCCcEEEEeEeecc-CC-CeEEEEECCEEeccCC---ceEEEc---cCCeEE------EccCCCCCCeEEEEEEEeC
Q psy10160 140 VFGVGSDISIPCDVDGY-PI-PQVFWYKDGQVIENDG---VHYRIT---ESNRLH------INQANATDSGEYRCVASNS 205 (558)
Q Consensus 140 ~v~~G~~v~L~C~~~g~-P~-p~i~W~~~g~~l~~~~---~~~~~~---~~~sL~------I~~v~~~D~G~Y~C~a~N~ 205 (558)
.+..|+.+.|.|.+.|. |. +.|.|+|+|..+.... ..+... .++++. |.....+|.|.|+|.|.|.
T Consensus 118 ~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~ 197 (214)
T 1ow0_A 118 ELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHE 197 (214)
T ss_dssp TTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECT
T ss_pred HhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECC
Confidence 35679999999999995 54 4899999999876531 112333 455443 3333334589999999997
Q ss_pred Cc
Q psy10160 206 YT 207 (558)
Q Consensus 206 ~G 207 (558)
.-
T Consensus 198 ~l 199 (214)
T 1ow0_A 198 AL 199 (214)
T ss_dssp TC
T ss_pred CC
Confidence 54
|
| >3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-09 Score=101.74 Aligned_cols=87 Identities=14% Similarity=0.216 Sum_probs=60.0
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--------------CEEecc--CCceEEEcc----CCeEEEccCC
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--------------GQVIEN--DGVHYRITE----SNRLHINQAN 191 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--------------g~~l~~--~~~~~~~~~----~~sL~I~~v~ 191 (558)
+...+....+.+|+.+.|.|.+.+ |.+.+.|+|. +..... ...++.+.. +.+|.|.+++
T Consensus 5 v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~ 83 (240)
T 3q5y_A 5 VVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALE 83 (240)
T ss_dssp CEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCC
T ss_pred cccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCC
Confidence 344566778899999999999987 8889999982 211111 112554432 2379999999
Q ss_pred CCCCeEEEEEEEeCC---ceeeEEEEEEEec
Q psy10160 192 ATDSGEYRCVASNSY---TSDENAVTIRVEG 219 (558)
Q Consensus 192 ~~D~G~Y~C~a~N~~---G~~~~~~~l~V~~ 219 (558)
.+|+|.|.|.+.+.. ........|.|..
T Consensus 84 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~ 114 (240)
T 3q5y_A 84 LEDSAMYFCASSLRWGDEQYFGPGTRLTVLE 114 (240)
T ss_dssp GGGCEEEEEEEESSTTBCCEECCCEEEEEES
T ss_pred hhHCEEEEEEEccCCCcceEEcCCEEEEEec
Confidence 999999999998432 2233445677753
|
| >1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-09 Score=100.06 Aligned_cols=128 Identities=17% Similarity=0.248 Sum_probs=78.9
Q ss_pred CCceEeeCCCcEEEEeEeeccC--CCeEEEEECC--EEec---------------cCCceEEEcc-----CCeEEEccCC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYP--IPQVFWYKDG--QVIE---------------NDGVHYRITE-----SNRLHINQAN 191 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~g--~~l~---------------~~~~~~~~~~-----~~sL~I~~v~ 191 (558)
+....+.+|+.++|.|.+.+.| .+.+.|+|+. .... ....|+.+.. +.+|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (215)
T 1c5d_H 7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ 86 (215)
T ss_dssp ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence 4556788999999999999875 4789999852 2110 0123555542 2389999999
Q ss_pred CCCCeEEEEEEEeCCce---eeEEEEEEEec-cCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCC-CCC-
Q psy10160 192 ATDSGEYRCVASNSYTS---DENAVTIRVEG-IFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQ-LPS- 265 (558)
Q Consensus 192 ~~D~G~Y~C~a~N~~G~---~~~~~~l~V~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~-~~~- 265 (558)
.+|+|.|.|.+.|..+. ....+.|.|.. ++.+|.+...+ ... ....|.... ..|.+.|. |.|
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~--~~~-------~~~~g~~v~---L~C~~~g~~P~p~ 154 (215)
T 1c5d_H 87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLA--PGC-------GDTTSSTVT---LGCLVKGYFPEPV 154 (215)
T ss_dssp GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEEC--CCS-------SCCCCSSEE---EEEEEEEEBSSCC
T ss_pred cccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEecc--CCh-------hhccCCcEE---EEEEEeeeEcCCc
Confidence 99999999999997532 22345777763 22223222111 000 012222333 44555565 777
Q ss_pred cccccchhhh
Q psy10160 266 YGPHIKRAVE 275 (558)
Q Consensus 266 ~~~w~~~~l~ 275 (558)
.+.|++++..
T Consensus 155 ~v~W~~~g~~ 164 (215)
T 1c5d_H 155 TVTWNSGALS 164 (215)
T ss_dssp EEEEGGGTTC
T ss_pred EEEEccCCcc
Confidence 8999998653
|
| >2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=8e-10 Score=106.54 Aligned_cols=133 Identities=18% Similarity=0.251 Sum_probs=83.2
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECC--EE---e----------cc---CCceEEEcc----CCeEEE
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG--QV---I----------EN---DGVHYRITE----SNRLHI 187 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g--~~---l----------~~---~~~~~~~~~----~~sL~I 187 (558)
+.+...+....+.+|+.++|.|.+.+.|.+.+.|+|++ .. + .. ...|+.+.. +.+|.|
T Consensus 25 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I 104 (279)
T 2wbj_D 25 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV 104 (279)
T ss_dssp CCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEE
T ss_pred ceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEE
Confidence 34455677788999999999999999899999999863 11 0 00 123555543 237999
Q ss_pred ccCCCCCCeEEEEEEEeCCc------eeeEEEEEEEeccC---CCCCCCCCCccccceeEEece---eeecccceeEEEE
Q psy10160 188 NQANATDSGEYRCVASNSYT------SDENAVTIRVEGIF---IHPSCRDLPLFANCKLIVEGR---YCQHHYYSQFCCE 255 (558)
Q Consensus 188 ~~v~~~D~G~Y~C~a~N~~G------~~~~~~~l~V~~~~---~~p~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~c~ 255 (558)
.+++.+|+|.|.|.+.|..| .....+.|.|.... .+|.+ .+..+ .+..|.....
T Consensus 105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v-----------~~~~~~~~~~~~g~~v~L--- 170 (279)
T 2wbj_D 105 TSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEV-----------AVFEPSEAEISHTQKATL--- 170 (279)
T ss_dssp SSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEE-----------EEEECCHHHHHHHSCCEE---
T ss_pred ccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEE-----------EEECCCcccccCCCceEE---
Confidence 99999999999999999532 11233567776432 12211 11111 0112333444
Q ss_pred eccCCCCCC--Ccccccchhhhh
Q psy10160 256 SCTRAGQLP--SYGPHIKRAVEA 276 (558)
Q Consensus 256 ~~~~~g~~~--~~~~w~~~~l~~ 276 (558)
.|.+.|.++ +.+.|++++...
T Consensus 171 ~C~~~g~~P~~~~v~W~k~g~~l 193 (279)
T 2wbj_D 171 VCLATGFYPDHVELSWWVNGKEV 193 (279)
T ss_dssp EEEEEEEBSSCEEEEEEETTEEC
T ss_pred EEEEeeEcCCCcEEEEEECCEEC
Confidence 444546543 689999987554
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.9e-09 Score=96.04 Aligned_cols=75 Identities=19% Similarity=0.198 Sum_probs=48.1
Q ss_pred CCcEEEEeEe----eccCCC--eEEEEECCEEeccCCceEEEcc---CCeEEEccCCCCCCeEEEEEEEeCCceeeEEEE
Q psy10160 144 GSDISIPCDV----DGYPIP--QVFWYKDGQVIENDGVHYRITE---SNRLHINQANATDSGEYRCVASNSYTSDENAVT 214 (558)
Q Consensus 144 G~~v~L~C~~----~g~P~p--~i~W~~~g~~l~~~~~~~~~~~---~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 214 (558)
+..+.|.|.. .|.|.+ .+.|.+++...... ..+.... +.+|.|.++...|.|.|+|.|.|..|....+..
T Consensus 126 ~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~-~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~ 204 (215)
T 3mtr_A 126 SSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHS-KWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAA 204 (215)
T ss_dssp TTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEE-EEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCC
T ss_pred cceEEEEEecCCccCCCceEEEEEEEEECCCCcccc-cccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccc
Confidence 4456677752 233444 36788776432110 0111111 268999999999999999999999998876666
Q ss_pred EEEec
Q psy10160 215 IRVEG 219 (558)
Q Consensus 215 l~V~~ 219 (558)
+.|..
T Consensus 205 ~~v~T 209 (215)
T 3mtr_A 205 SEFKT 209 (215)
T ss_dssp EEEEC
T ss_pred eeeEe
Confidence 66643
|
| >2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.5e-10 Score=105.82 Aligned_cols=132 Identities=11% Similarity=0.041 Sum_probs=80.4
Q ss_pred EecCCceEeeCCCcEEEEeEeecc-CC-C-eEEEEECCEEe-ccCCceEEEccC------CeEEEccCCCCCCeEEEEEE
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGY-PI-P-QVFWYKDGQVI-ENDGVHYRITES------NRLHINQANATDSGEYRCVA 202 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~-P~-p-~i~W~~~g~~l-~~~~~~~~~~~~------~sL~I~~v~~~D~G~Y~C~a 202 (558)
...+....+.+|+.++|.|.+.|. |. | .+.|+++|..+ ...........+ .+|.|.+++.+|+|.|+|.+
T Consensus 17 ~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~ 96 (231)
T 2w59_A 17 AIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTV 96 (231)
T ss_dssp EECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEE
T ss_pred EeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEE
Confidence 345666667899999999999995 74 6 99999998876 322211112222 36999999999999999999
Q ss_pred EeCCceeeEEEEEEEecc---CCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCCCC--Ccccccchhhhhh
Q psy10160 203 SNSYTSDENAVTIRVEGI---FIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLP--SYGPHIKRAVEAE 277 (558)
Q Consensus 203 ~N~~G~~~~~~~l~V~~~---~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~~~--~~~~w~~~~l~~~ 277 (558)
.|..+.... .+.|... ..+|... +..+..... .+......|.+.|.++ +.+.|++++..+.
T Consensus 97 ~~~~~~~~~--~~~v~~~~~~~~~P~v~-----------v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~ 162 (231)
T 2w59_A 97 QHEELPLPL--SKSVYRNTGPTTPPLIY-----------PFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWLRDHRAVP 162 (231)
T ss_dssp ECTTCSSCE--EEEECCCCSCCBCCEEE-----------EECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred EcCCCCCce--EEEEecCCCCCcCCEEE-----------EeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEEECCEECC
Confidence 998865433 3334211 1122111 111000000 0112445666667543 6799999976654
Q ss_pred h
Q psy10160 278 A 278 (558)
Q Consensus 278 ~ 278 (558)
.
T Consensus 163 ~ 163 (231)
T 2w59_A 163 A 163 (231)
T ss_dssp G
T ss_pred C
Confidence 3
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-09 Score=103.51 Aligned_cols=88 Identities=24% Similarity=0.336 Sum_probs=60.5
Q ss_pred EEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEec----c-CC---------c-eEEEcc----CCeEEEcc
Q psy10160 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVIE----N-DG---------V-HYRITE----SNRLHINQ 189 (558)
Q Consensus 131 ~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l~----~-~~---------~-~~~~~~----~~sL~I~~ 189 (558)
.+...+....+.+|+.++|.|.+.+ |.+.+.|+|. +.... . ++ . ++.+.. +.+|.|.+
T Consensus 29 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~ 107 (270)
T 3qib_D 29 KVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQS 107 (270)
T ss_dssp CCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESS
T ss_pred eEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECC
Confidence 3445566788899999999999876 7789999982 21100 0 00 0 444432 34799999
Q ss_pred CCCCCCeEEEEEEEeCCc----eeeEEEEEEEec
Q psy10160 190 ANATDSGEYRCVASNSYT----SDENAVTIRVEG 219 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N~~G----~~~~~~~l~V~~ 219 (558)
++.+|+|.|.|.+.|..+ .....+.|.|..
T Consensus 108 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~ 141 (270)
T 3qib_D 108 SEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLE 141 (270)
T ss_dssp CCGGGCEEEEEEEESCTTCCCCEECCCEEEEEES
T ss_pred CCHhHCeEEEEEEecCCCccceEECCcEEEEEcc
Confidence 999999999999997432 223445677764
|
| >2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.9e-09 Score=101.48 Aligned_cols=128 Identities=14% Similarity=0.159 Sum_probs=79.3
Q ss_pred CCceEeeCCCcEEEEeEeeccC--CCeEEEEECC--EEe------cc----------CCceEEEcc-----CCeEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYP--IPQVFWYKDG--QVI------EN----------DGVHYRITE-----SNRLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~g--~~l------~~----------~~~~~~~~~-----~~sL~I~~v 190 (558)
+....+.+|+.++|.|.+.+.| .+.+.|+|+. ..+ .. ...|+.+.. +.+|.|.++
T Consensus 13 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 92 (261)
T 2xqy_G 13 PGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSL 92 (261)
T ss_dssp CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred CCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCC
Confidence 4567789999999999999987 6889999863 211 00 023555543 247999999
Q ss_pred CCCCCeEEEEEEEeCCce---eeEEEEEEEecc-CCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCC-CCC
Q psy10160 191 NATDSGEYRCVASNSYTS---DENAVTIRVEGI-FIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQ-LPS 265 (558)
Q Consensus 191 ~~~D~G~Y~C~a~N~~G~---~~~~~~l~V~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~-~~~ 265 (558)
+.+|+|.|.|.+.|..+. ....+.|.|... ..+|.+...+ .. ..+.. +....+.|.+.+. |++
T Consensus 93 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~--p~-------~~v~~---g~~v~L~C~~~g~~P~~ 160 (261)
T 2xqy_G 93 TSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLA--PV-------CGDTT---GSSVTLGCLVKGYFPEP 160 (261)
T ss_dssp CGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEEC--CC-------CC--C---CSEEEEEEEEEEEBSSC
T ss_pred CcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeC--CC-------ccccC---CCcEEEEEEEEeEeCCC
Confidence 999999999999997531 123457777642 2222221100 00 01112 2333355555554 666
Q ss_pred -cccccchhhh
Q psy10160 266 -YGPHIKRAVE 275 (558)
Q Consensus 266 -~~~w~~~~l~ 275 (558)
.+.|++++..
T Consensus 161 i~v~W~k~g~~ 171 (261)
T 2xqy_G 161 VTLTWNSGSLS 171 (261)
T ss_dssp CEEEEGGGTCC
T ss_pred CEEEEecCCCc
Confidence 8999998754
|
| >2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-08 Score=94.37 Aligned_cols=128 Identities=13% Similarity=0.144 Sum_probs=80.2
Q ss_pred CCceEeeCCCcEEEEeEeeccC--CCeEEEEECC--EE---ec-------------cCCceEEEccC-----CeEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYP--IPQVFWYKDG--QV---IE-------------NDGVHYRITES-----NRLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~g--~~---l~-------------~~~~~~~~~~~-----~sL~I~~v 190 (558)
+....+.+|+.++|.|.+.+.| .+.+.|+|.. .. +. ....|+.+..+ .+|.|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (220)
T 2fbj_H 7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV 86 (220)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred CCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence 3457789999999999999876 6789999842 11 10 01236655432 37999999
Q ss_pred CCCCCeEEEEEEEeCCce---eeEEEEEEEeccC-CCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCCC-CC-
Q psy10160 191 NATDSGEYRCVASNSYTS---DENAVTIRVEGIF-IHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQ-LP- 264 (558)
Q Consensus 191 ~~~D~G~Y~C~a~N~~G~---~~~~~~l~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g~-~~- 264 (558)
+.+|+|.|.|.+.|..+. ....+.|.|...+ .+|.+...+ ...+..|..... .|.+.+. |.
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~----------~~~~~~g~~v~L---~C~~~g~~P~~ 153 (220)
T 2fbj_H 87 RSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT----------LPPALSSDPVII---GCLIHDYFPSG 153 (220)
T ss_dssp CGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC----------CCSSSCCSSEEE---EEEEEEEBSCC
T ss_pred ChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee----------cccccCCCcEEE---EEEEEeEECCC
Confidence 999999999999998653 2234577786432 222211111 001122333444 4444455 54
Q ss_pred -Ccccccchhhhh
Q psy10160 265 -SYGPHIKRAVEA 276 (558)
Q Consensus 265 -~~~~w~~~~l~~ 276 (558)
+.+.|++++...
T Consensus 154 ~~~v~W~~~~~~~ 166 (220)
T 2fbj_H 154 TMNVTWGKSGKDI 166 (220)
T ss_dssp CEEEEESCCCSSC
T ss_pred cEEEEEecCCEec
Confidence 689999987543
|
| >1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.1e-09 Score=99.82 Aligned_cols=147 Identities=14% Similarity=0.105 Sum_probs=85.9
Q ss_pred cCceeEEeccCCC---CCC-cEEEEeCCcccCCCCc-----eeecccc---cee---------eceeEEeeccceee--E
Q psy10160 63 YGTILSSAFPSES---ASP-VVTQTTTTTTEATSPH-----VYAALTH---CVP---------WSNVCLFGARSGYL--K 119 (558)
Q Consensus 63 ~~~~~~~~~~~~~---p~p-~v~W~~~~~~~~~~~~-----~~~g~~~---~~~---------~~~~~~~~~~~~~~--~ 119 (558)
++.+.+.|...+. |.| .|.|++++..+..... ...+.|. .+. -.|.|.+.+..+.. .
T Consensus 32 G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~ 111 (239)
T 1i1c_A 32 GLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPAPIE 111 (239)
T ss_dssp SSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSSCEE
T ss_pred CCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCCCcE
Confidence 4466788888776 766 8999998865542210 0001110 111 13466666654421 1
Q ss_pred Eeee--ceeeeCcEEEecCCceEeeCCCcEEEEeEeecc-CC-CeEEEEECCEEeccCC-ceEEEccCCe------EEEc
Q psy10160 120 ETQN--GGYLVPVKVNITLETQVFGVGSDISIPCDVDGY-PI-PQVFWYKDGQVIENDG-VHYRITESNR------LHIN 188 (558)
Q Consensus 120 ~~~~--~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P~-p~i~W~~~g~~l~~~~-~~~~~~~~~s------L~I~ 188 (558)
.... ..+..+|.+.+.+.......|+.+.|.|.+.|. |. +.+.|+|+|..+.... .++....+++ |.|.
T Consensus 112 ~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~s~l~v~ 191 (239)
T 1i1c_A 112 KSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVK 191 (239)
T ss_dssp EEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEE
T ss_pred EEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECCCCCEEEEEEEEEC
Confidence 1111 134456776655544333458899999999994 54 3799999999875321 1122234443 4444
Q ss_pred cCCCCCCeEEEEEEEeCCcee
Q psy10160 189 QANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 189 ~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
....+|.|.|+|.|.|.....
T Consensus 192 ~~~~~~~g~YtC~v~n~~l~~ 212 (239)
T 1i1c_A 192 KETWQQGNTFTCSVLHEGLEN 212 (239)
T ss_dssp HHHHHTTCCEEEEEECTTSGG
T ss_pred hhhcCCCCEEEEEEECCCCCC
Confidence 444457999999999987543
|
| >3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.8e-09 Score=101.04 Aligned_cols=85 Identities=15% Similarity=0.240 Sum_probs=59.8
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEE---e-ccC----------Cc-eEEEccCCe--EEEccCCCCCC
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQV---I-END----------GV-HYRITESNR--LHINQANATDS 195 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~---l-~~~----------~~-~~~~~~~~s--L~I~~v~~~D~ 195 (558)
.+....+.+|+.++|.|.+.+.|.+.+.|+|. +.. + ... .. |+.+..++. |.|.+++.+|+
T Consensus 7 ~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~Ds 86 (253)
T 3to4_D 7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQG 86 (253)
T ss_dssp ECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCSSC
T ss_pred CCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChhhC
Confidence 45567789999999999999999999999982 111 0 000 01 555544333 99999999999
Q ss_pred eEEEEEEEeCCc------eeeEEEEEEEec
Q psy10160 196 GEYRCVASNSYT------SDENAVTIRVEG 219 (558)
Q Consensus 196 G~Y~C~a~N~~G------~~~~~~~l~V~~ 219 (558)
|.|.|.+.|..+ .......|.|..
T Consensus 87 G~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~ 116 (253)
T 3to4_D 87 RTLYCTSSADHWTNTGQLYFGEGSKLTVLE 116 (253)
T ss_dssp EEEEEEEECSCCSTTCCEEECCCEEEEEES
T ss_pred eEEEEEEecCCCCcccceEECCCEEEEEec
Confidence 999999998754 112334666653
|
| >3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E | Back alignment and structure |
|---|
Probab=98.86 E-value=2.6e-09 Score=101.52 Aligned_cols=128 Identities=14% Similarity=0.196 Sum_probs=78.2
Q ss_pred CCceEeeCCCcEEEEeEeeccC--CCeEEEEECC--EEec----------------cCCceEEEcc-----CCeEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYP--IPQVFWYKDG--QVIE----------------NDGVHYRITE-----SNRLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~g--~~l~----------------~~~~~~~~~~-----~~sL~I~~v 190 (558)
+....+.+|+.++|.|.+.+.| .+.+.|+|.. ..+. ....|+.+.. +.+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (257)
T 3bn9_D 7 SGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSL 86 (257)
T ss_dssp ECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESC
T ss_pred cCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCC
Confidence 3456788999999999999876 6789999853 1110 0123555442 237999999
Q ss_pred CCCCCeEEEEEEEeCCce-------------eeEEEEEEEec-cCCCCCCCCCCccccceeEEeceeeecccceeEEEEe
Q psy10160 191 NATDSGEYRCVASNSYTS-------------DENAVTIRVEG-IFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCES 256 (558)
Q Consensus 191 ~~~D~G~Y~C~a~N~~G~-------------~~~~~~l~V~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~ 256 (558)
+.+|+|.|.|.+.|..|. ....+.|.|.. ++.+|.+...+ .... .. . +......
T Consensus 87 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~--p~~~-~~------~---g~~v~L~ 154 (257)
T 3bn9_D 87 RAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLA--PSSK-ST------S---GGTAALG 154 (257)
T ss_dssp CGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCC--C---------------------CC
T ss_pred ChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEec--Cccc-cc------C---CCcEEEE
Confidence 999999999999998651 11335778865 22233322111 0001 11 1 3334456
Q ss_pred ccCCCC-CCC-cccccchhhh
Q psy10160 257 CTRAGQ-LPS-YGPHIKRAVE 275 (558)
Q Consensus 257 ~~~~g~-~~~-~~~w~~~~l~ 275 (558)
|.+.|. |+| .+.|++++..
T Consensus 155 C~~~g~~P~pi~v~W~k~g~~ 175 (257)
T 3bn9_D 155 CLVKDYFPEPVTVSWNSGALT 175 (257)
T ss_dssp CEEEEEBSSCCEEEETTTTCC
T ss_pred EEEeeEECCCcEEEEeeCCCc
Confidence 766665 666 8999998754
|
| >1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.8e-09 Score=102.00 Aligned_cols=92 Identities=20% Similarity=0.255 Sum_probs=62.8
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccC-----CCeEEEEECC--EE---ec--------cCCceEEEcc---CCeEEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYP-----IPQVFWYKDG--QV---IE--------NDGVHYRITE---SNRLHI 187 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P-----~p~i~W~~~g--~~---l~--------~~~~~~~~~~---~~sL~I 187 (558)
.+.+...+....+.+|+.++|.|.+.+.| .+.+.|+|.. .. +. ....++.+.. ..+|.|
T Consensus 15 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I 94 (268)
T 1x9q_A 15 DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKI 94 (268)
T ss_dssp CCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred cceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEE
Confidence 34455566777889999999999999987 5889999853 21 11 0123555432 237999
Q ss_pred ccCCCCCCeEEEEEEEeCCcee-eEEEEEEEecc
Q psy10160 188 NQANATDSGEYRCVASNSYTSD-ENAVTIRVEGI 220 (558)
Q Consensus 188 ~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~ 220 (558)
.+++.+|+|.|.|.+.|..+.. .....|.|...
T Consensus 95 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~ 128 (268)
T 1x9q_A 95 NRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSS 128 (268)
T ss_dssp SSCCGGGCEEEEEEECSSSSCEECCCEEEC----
T ss_pred CCCChhHCEEEEEEEecCCCceEcCCEEEEEccC
Confidence 9999999999999999986532 23456666543
|
| >1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... | Back alignment and structure |
|---|
Probab=98.84 E-value=3.9e-09 Score=96.70 Aligned_cols=68 Identities=19% Similarity=0.322 Sum_probs=48.0
Q ss_pred eCCCcEEEEeEeeccCC--C--eEEEEECCEEeccCC-ceEEEccCCeEEEcc---CCCC---CCeEEEEEEEeCCcee
Q psy10160 142 GVGSDISIPCDVDGYPI--P--QVFWYKDGQVIENDG-VHYRITESNRLHINQ---ANAT---DSGEYRCVASNSYTSD 209 (558)
Q Consensus 142 ~~G~~v~L~C~~~g~P~--p--~i~W~~~g~~l~~~~-~~~~~~~~~sL~I~~---v~~~---D~G~Y~C~a~N~~G~~ 209 (558)
.+|+.+.|.|.+.|.|+ | .|.|+|++..+.... .......++.+.+.. +... |+|.|+|.|.|..+..
T Consensus 16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~ 94 (207)
T 1l6x_A 16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 94 (207)
T ss_dssp CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCc
Confidence 78999999999999863 3 899999998775421 011223345554432 3344 4999999999998865
|
| >2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-08 Score=82.78 Aligned_cols=84 Identities=18% Similarity=0.190 Sum_probs=62.6
Q ss_pred CCceEeeCCCcEEEEeEe-eccCCCeEEEEECC-EEec----------c---CCceEEEc-cCCeEEEccCCCCCCeEEE
Q psy10160 136 LETQVFGVGSDISIPCDV-DGYPIPQVFWYKDG-QVIE----------N---DGVHYRIT-ESNRLHINQANATDSGEYR 199 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~-~g~P~p~i~W~~~g-~~l~----------~---~~~~~~~~-~~~sL~I~~v~~~D~G~Y~ 199 (558)
.....+.+|+.++|.|.. .+.|.+.+.|++.. ..+. . -..|+.+. .+.+|.|.+++.+|+|.|.
T Consensus 10 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~ 89 (110)
T 2ptt_A 10 IPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKGTYY 89 (110)
T ss_dssp CCSEEEETTSCEEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECTTTCCEEESSCCGGGCEEEE
T ss_pred CCCEEEecCCcEEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeCCCccEEECCCCcccCeEEE
Confidence 345678899999999998 77888899999942 2121 0 01356554 4568999999999999999
Q ss_pred EEEEeCCceeeEEEEEEEecc
Q psy10160 200 CVASNSYTSDENAVTIRVEGI 220 (558)
Q Consensus 200 C~a~N~~G~~~~~~~l~V~~~ 220 (558)
|.+.+.. .....+.|.|.+|
T Consensus 90 C~v~~~~-~~~~~~~L~V~dp 109 (110)
T 2ptt_A 90 MRVLRET-ENELKITLEVFDP 109 (110)
T ss_dssp EEEESSS-BCCEEEEEEEECC
T ss_pred EEEEcCC-CcEEEEEEEEEcc
Confidence 9998876 4456778888543
|
| >1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B | Back alignment and structure |
|---|
Probab=98.83 E-value=6.6e-09 Score=85.10 Aligned_cols=74 Identities=22% Similarity=0.405 Sum_probs=55.0
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCCCeEEEEECC--EEe---------ccCCceEEEccCC------eEEEccCCCCCC
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG--QVI---------ENDGVHYRITESN------RLHINQANATDS 195 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g--~~l---------~~~~~~~~~~~~~------sL~I~~v~~~D~ 195 (558)
...|....+.+|+.++|.|.+.+.+ +.+.|+|.. ..+ .....++.+..+. +|.|.+++.+|+
T Consensus 5 ~q~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~Ds 83 (113)
T 1h5b_A 5 EQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDS 83 (113)
T ss_dssp EEECSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGC
T ss_pred EECCCEEEEecCCcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChhhC
Confidence 3446677889999999999998865 789999853 111 0112345543322 799999999999
Q ss_pred eEEEEEEEeCCc
Q psy10160 196 GEYRCVASNSYT 207 (558)
Q Consensus 196 G~Y~C~a~N~~G 207 (558)
|.|.|.+.|..|
T Consensus 84 G~Y~C~~~n~~~ 95 (113)
T 1h5b_A 84 GTYFCAAEASSG 95 (113)
T ss_dssp EEEEEEEECSSS
T ss_pred EEEEEEEecCCC
Confidence 999999999865
|
| >2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=8.7e-09 Score=103.80 Aligned_cols=79 Identities=14% Similarity=0.215 Sum_probs=53.5
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccC--CCeEEEEECCEEeccCC-ceEEEccCC------eEEEccCCCCCCeEEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYP--IPQVFWYKDGQVIENDG-VHYRITESN------RLHINQANATDSGEYR 199 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~g~~l~~~~-~~~~~~~~~------sL~I~~v~~~D~G~Y~ 199 (558)
+|.+.+.+.......|+.++|.|.+.|.+ .+.|.|+|+|..+.... .......++ .|.|.....+|.|.|+
T Consensus 274 ~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~Yt 353 (376)
T 2aty_A 274 APQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFT 353 (376)
T ss_pred CCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEEEEEEEcHHHhCCCCcEE
Confidence 44444444444445689999999999963 45799999998874321 011112232 4777777778899999
Q ss_pred EEEEeCCc
Q psy10160 200 CVASNSYT 207 (558)
Q Consensus 200 C~a~N~~G 207 (558)
|.|.|..-
T Consensus 354 C~v~h~~l 361 (376)
T 2aty_A 354 CSVLHEGL 361 (376)
T ss_pred EEEEeCCC
Confidence 99999653
|
| >1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ... | Back alignment and structure |
|---|
Probab=98.83 E-value=5.1e-09 Score=86.76 Aligned_cols=88 Identities=17% Similarity=0.262 Sum_probs=61.1
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCCCeEEEEECC--EE---e-cc-------CCceEEEcc---CCeEEEccCCCCCCe
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG--QV---I-EN-------DGVHYRITE---SNRLHINQANATDSG 196 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g--~~---l-~~-------~~~~~~~~~---~~sL~I~~v~~~D~G 196 (558)
...|....+.+|+.++|.|.+.+.|.+.+.|+|.. .. + .. ...|+.+.. ..+|.|.+++.+|+|
T Consensus 5 ~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG 84 (120)
T 1mqk_L 5 TQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFG 84 (120)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred EecCCeEEEcCCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccCCEEEEEECCCCHHHCE
Confidence 34466778899999999999999888899999843 21 1 10 123555432 247999999999999
Q ss_pred EEEEEEEeCC-c-eeeEEEEEEEecc
Q psy10160 197 EYRCVASNSY-T-SDENAVTIRVEGI 220 (558)
Q Consensus 197 ~Y~C~a~N~~-G-~~~~~~~l~V~~~ 220 (558)
.|.|.+.|.. . .......|.|.+.
T Consensus 85 ~Y~C~~~~~~~~~~fg~gt~L~V~~~ 110 (120)
T 1mqk_L 85 SYYCQHHYGTPPLTFGGGTKLEIKRE 110 (120)
T ss_dssp EEEEEECSSSSSCCBCCCEEEEEC--
T ss_pred EEEEEEEeCCCceEECCCeEEEEecC
Confidence 9999999864 2 1123446666543
|
| >2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.7e-08 Score=85.71 Aligned_cols=94 Identities=17% Similarity=0.344 Sum_probs=64.5
Q ss_pred EEecCCceEeeCCCcEEEEeEeecc-CCCeEEEEECCE----EeccC-C---ceEEEc--------cCCeEEEccCCCCC
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGY-PIPQVFWYKDGQ----VIEND-G---VHYRIT--------ESNRLHINQANATD 194 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~-P~p~i~W~~~g~----~l~~~-~---~~~~~~--------~~~sL~I~~v~~~D 194 (558)
+...+....+.+|+.++|.|.+.+. |.+.+.|+|.+. .+... + .++... .+.+|.|.+++.+|
T Consensus 11 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D 90 (136)
T 2d9c_A 11 VIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPAD 90 (136)
T ss_dssp EECCCSEEEEETTSCEEECCEESCCCSCCCCEEEETTTSSCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCTTT
T ss_pred EEecCcEEEEcCCCCEEEEEEEcCCCCCceEEEEeecCCCeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCHHH
Confidence 3344567788999999999999876 667899999752 11111 1 122211 13479999999999
Q ss_pred CeEEEEEEEeCCc--eee----EEEEEEEeccCCCCC
Q psy10160 195 SGEYRCVASNSYT--SDE----NAVTIRVEGIFIHPS 225 (558)
Q Consensus 195 ~G~Y~C~a~N~~G--~~~----~~~~l~V~~~~~~p~ 225 (558)
+|.|.|.+.|..+ ... ..+.|.|.+++..|.
T Consensus 91 sG~Y~C~~~~~~~~~~~~~~~g~~t~L~V~~~~s~P~ 127 (136)
T 2d9c_A 91 AGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPSAPV 127 (136)
T ss_dssp CEEEEEEEEECCSSSCEEEEECCCEEEEEECCCCCCC
T ss_pred CEEEEEEEEeCCCCcccceeeCCCeEEEEEeCCCCCc
Confidence 9999999998653 111 457888876654443
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=98.83 E-value=7.2e-09 Score=99.73 Aligned_cols=156 Identities=10% Similarity=0.143 Sum_probs=66.9
Q ss_pred eeEEeeccceeeEEeeeceee-eCcEEEecCCceEeeCCCcEEEEeEeeccCC-C--eEEEEECCEEeccCCceEEEccC
Q psy10160 107 NVCLFGARSGYLKETQNGGYL-VPVKVNITLETQVFGVGSDISIPCDVDGYPI-P--QVFWYKDGQVIENDGVHYRITES 182 (558)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~-p--~i~W~~~g~~l~~~~~~~~~~~~ 182 (558)
+.|.+..............+. .|..+.+.+....+.+|+.++|.|.+.|.++ + .|.|+|++..+.... ......+
T Consensus 63 y~C~~~~~~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~-~~~~~~~ 141 (291)
T 1mq8_A 63 PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREP-AVGEPAE 141 (291)
T ss_dssp CEEEEECSSCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEE-CCBTTEE
T ss_pred EEEEEEcCCccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeeccc-CCCCCce
Confidence 556655443223222233332 3445555555556889999999999988544 3 589999998875321 0000112
Q ss_pred CeEEEccCCCCCCeEEEEEEEeCCce--------eeEEEEEEEeccCCCCCCCCCCccccceeEEeceeeecccceeEEE
Q psy10160 183 NRLHINQANATDSGEYRCVASNSYTS--------DENAVTIRVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCC 254 (558)
Q Consensus 183 ~sL~I~~v~~~D~G~Y~C~a~N~~G~--------~~~~~~l~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c 254 (558)
.+|.+.....+|.+.|+|+|.|..+. .+....|.|..+|........+ ..+. .+..+.
T Consensus 142 ~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p-----~~l~---------eG~~v~ 207 (291)
T 1mq8_A 142 VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSP-----RVLE---------VDTQGT 207 (291)
T ss_dssp EEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-------------------------------------
T ss_pred EEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCC-----cCcc---------CCCeEE
Confidence 35666656666667999999998663 2455677775443211111111 1111 245555
Q ss_pred EeccCCCCCCC---cccccchhhhhh
Q psy10160 255 ESCTRAGQLPS---YGPHIKRAVEAE 277 (558)
Q Consensus 255 ~~~~~~g~~~~---~~~w~~~~l~~~ 277 (558)
.+|.+.|.+|+ .+.|.+++....
T Consensus 208 l~C~~~g~~P~~~~~v~w~~~g~~l~ 233 (291)
T 1mq8_A 208 VVCSLDGLFPVSEAQVHLALGDQRLN 233 (291)
T ss_dssp --------------------------
T ss_pred EEEEcCCCCCCcccEEEEEECCEecC
Confidence 77888787665 488988865543
|
| >1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ... | Back alignment and structure |
|---|
Probab=98.82 E-value=3.9e-09 Score=99.03 Aligned_cols=129 Identities=12% Similarity=0.194 Sum_probs=79.1
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCCCeEEEEECC--EE---ec-----------cCCceEEEcc----CCeEEEccCCCC
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG--QV---IE-----------NDGVHYRITE----SNRLHINQANAT 193 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g--~~---l~-----------~~~~~~~~~~----~~sL~I~~v~~~ 193 (558)
..+....+.+|+.++|.|.+. .+.+.+.|+|++ .. +. ....|+.+.. +.+|.|.+++.+
T Consensus 4 q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~ 82 (238)
T 1bec_A 4 QSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPS 82 (238)
T ss_dssp EECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGG
T ss_pred cCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcc
Confidence 456677889999999999985 468899999853 11 10 0123454432 237999999999
Q ss_pred CCeEEEEEEEeCCc---e--eeEEEEEEEeccC---CCCCCCCCCccccceeEEece---eeecccceeEEEEeccCCCC
Q psy10160 194 DSGEYRCVASNSYT---S--DENAVTIRVEGIF---IHPSCRDLPLFANCKLIVEGR---YCQHHYYSQFCCESCTRAGQ 262 (558)
Q Consensus 194 D~G~Y~C~a~N~~G---~--~~~~~~l~V~~~~---~~p~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~c~~~~~~g~ 262 (558)
|+|.|.|.+.|..+ . ......|.|.... .+|.+. +..+ .+..|......|. +.|.
T Consensus 83 D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~-----------~~~~~~~~~~~g~~~~L~C~---~~g~ 148 (238)
T 1bec_A 83 QTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVS-----------LFEPSKAEIANKQKATLVCL---ARGF 148 (238)
T ss_dssp GCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEE-----------EECCCSTTCSSSCSCSEEEE---EEEE
T ss_pred cCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceE-----------EECCChHHcccCCceEEEEE---EeeE
Confidence 99999999999752 1 1233467776432 122211 1111 1122334444444 4465
Q ss_pred -CCC-cccccchhhhhh
Q psy10160 263 -LPS-YGPHIKRAVEAE 277 (558)
Q Consensus 263 -~~~-~~~w~~~~l~~~ 277 (558)
|++ .+.|++++....
T Consensus 149 ~P~~~~v~W~~~g~~~~ 165 (238)
T 1bec_A 149 FPDHVELSWWVNGKEVH 165 (238)
T ss_dssp BSCCEEEEEEETTEEEC
T ss_pred eCCCcEEEEEECCEECC
Confidence 544 899999876543
|
| >1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-09 Score=102.78 Aligned_cols=78 Identities=14% Similarity=0.243 Sum_probs=57.9
Q ss_pred cEEEecCCceE-eeCCCcEEEEeEeecc---CCC-eEEEEECCEEeccC---------CceEEEccCCeEEEccCCCCCC
Q psy10160 130 VKVNITLETQV-FGVGSDISIPCDVDGY---PIP-QVFWYKDGQVIEND---------GVHYRITESNRLHINQANATDS 195 (558)
Q Consensus 130 ~~~~~~~~~~~-v~~G~~v~L~C~~~g~---P~p-~i~W~~~g~~l~~~---------~~~~~~~~~~sL~I~~v~~~D~ 195 (558)
..+..++.... +.+|+.++|.|.+.|. |.| .|.|+|++..+... +.+|. ...+|.|.+++.+|+
T Consensus 17 ~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~--~~s~L~I~~~~~~D~ 94 (239)
T 1i1c_A 17 SVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLR--SVSELPIVERDWLNG 94 (239)
T ss_dssp CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEE--EEEEEECCHHHHHTT
T ss_pred EEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEE--EEEEEEEEhhHccCC
Confidence 33334444433 7899999999999987 877 89999998765421 11221 124799999999999
Q ss_pred eEEEEEEEeCCcee
Q psy10160 196 GEYRCVASNSYTSD 209 (558)
Q Consensus 196 G~Y~C~a~N~~G~~ 209 (558)
|.|+|.+.|..|..
T Consensus 95 g~Y~C~~~~~~~~~ 108 (239)
T 1i1c_A 95 KTFKCKVNSGAFPA 108 (239)
T ss_dssp CCEEEEEECSSSSS
T ss_pred CeEEEEEecccCCC
Confidence 99999999998865
|
| >2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=6.1e-09 Score=86.42 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=65.1
Q ss_pred CceEeeCCCcEEEEeEe-eccCCCeEEEEECCE-Eec---------c---CCceEEEc-cCCeEEEccCCCCCCeEEEEE
Q psy10160 137 ETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQ-VIE---------N---DGVHYRIT-ESNRLHINQANATDSGEYRCV 201 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~-~g~P~p~i~W~~~g~-~l~---------~---~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C~ 201 (558)
.+..+.+|++|+|.|.. ...+.+.+.|+++.. .+. . -..|+.+. .+++|.|.+++.+|+|.|.|.
T Consensus 12 ~pv~~~~G~~VtL~c~~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~~~~~sL~I~nv~~~DsG~Y~c~ 91 (121)
T 2edo_A 12 VHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMR 91 (121)
T ss_dssp BCCEEETTSCEEECCSSCCCSSEEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEECTTTCCEEESSCCGGGCSEEEEE
T ss_pred EEEEEEeCCCEEEeCCCCCCCceeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEeCCCceEEEeCCCHHHCeEEEEE
Confidence 34678899999999987 444456799998652 111 0 01244555 567999999999999999999
Q ss_pred EEeCCce-eeEEEEEEEeccCCCCCC
Q psy10160 202 ASNSYTS-DENAVTIRVEGIFIHPSC 226 (558)
Q Consensus 202 a~N~~G~-~~~~~~l~V~~~~~~p~~ 226 (558)
+.|..+. ....+.|.|.++...|.+
T Consensus 92 v~~~~~~~~~~~~~L~V~~~~~~P~I 117 (121)
T 2edo_A 92 VLKKTGNEQEWKIKLQVLDPVPKPVI 117 (121)
T ss_dssp EEETTTEEEECCEECEEECCSCCCCC
T ss_pred EEcCCCcEEEEEEEEEEECCCCCCEE
Confidence 9987654 457788999776544443
|
| >3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B | Back alignment and structure |
|---|
Probab=98.80 E-value=9.1e-09 Score=95.22 Aligned_cols=128 Identities=14% Similarity=0.200 Sum_probs=76.8
Q ss_pred CCceEeeCCCcEEEEeEeeccC--CCeEEEEECC--EEe------cc------------CCceEEEccCC-----eEEEc
Q psy10160 136 LETQVFGVGSDISIPCDVDGYP--IPQVFWYKDG--QVI------EN------------DGVHYRITESN-----RLHIN 188 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~g--~~l------~~------------~~~~~~~~~~~-----sL~I~ 188 (558)
+....+.+|+.++|.|.+.+.+ .+.+.|+|.. ... .. ...|+.+..++ +|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 86 (221)
T 3m8o_H 7 SGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMN 86 (221)
T ss_dssp ESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEEC
T ss_pred cCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEEC
Confidence 3456788999999999999854 6789999732 111 00 11355554322 69999
Q ss_pred cCCCCCCeEEEEEEEeCC--ceeeEEEEEEEec-cCCCCCCCCCCccccceeEEeceeeecccceeEEEEeccCCC-CCC
Q psy10160 189 QANATDSGEYRCVASNSY--TSDENAVTIRVEG-IFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAG-QLP 264 (558)
Q Consensus 189 ~v~~~D~G~Y~C~a~N~~--G~~~~~~~l~V~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~g-~~~ 264 (558)
+++.+|+|.|.|.+.|.. ........|.|.. +..+|.+... ..... .. +......|.+.+ .|+
T Consensus 87 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~---------~~~~~-~~---g~~v~L~C~~~~~~P~ 153 (221)
T 3m8o_H 87 SLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPL---------SLCST-QP---DGNVVIACLVQGFFPQ 153 (221)
T ss_dssp SCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEE---------ECCSC-CC---TTEEEEEEEEEEEBSS
T ss_pred CCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEe---------cCccc-cc---CCCEEEEEEEEeeECC
Confidence 999999999999999974 2233445677752 2222221100 00000 12 233334555555 554
Q ss_pred --Ccccccchhhhh
Q psy10160 265 --SYGPHIKRAVEA 276 (558)
Q Consensus 265 --~~~~w~~~~l~~ 276 (558)
+.+.|++++...
T Consensus 154 ~~~~v~W~~~g~~~ 167 (221)
T 3m8o_H 154 EPLSVTWSESGQGV 167 (221)
T ss_dssp CSEEEEESCCSTTC
T ss_pred CCEEEEEEECCEEC
Confidence 379999987654
|
| >2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=4.7e-08 Score=74.81 Aligned_cols=83 Identities=22% Similarity=0.354 Sum_probs=63.4
Q ss_pred CceEeeCCCcEEEEeEeec-cCCCeEEEEECC----EEeccCCceEEEccCC---eEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 137 ETQVFGVGSDISIPCDVDG-YPIPQVFWYKDG----QVIENDGVHYRITESN---RLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g-~P~p~i~W~~~g----~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
+...+..|+++.|.|.+.+ .+.|.++|-|-+ .+++..........+- .|.|.+|-.+|+|.|.|.|.+..|.
T Consensus 19 S~hsv~~G~~f~leCpv~yc~~rP~VtWcKln~~~c~~L~~~~q~w~E~~N~s~fvLhf~~V~~sDsGsYRCsAn~~sg~ 98 (120)
T 2aw2_A 19 SEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNL 98 (120)
T ss_dssp EEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred ccceEecCCeEEEEccEEeccCCCceEEEecCCceEEECccccccceecCCeeEEEEEEeeeeEcCCcceEEEeeCCCCc
Confidence 3556789999999999999 699999999855 4554422111222221 5899999999999999999999998
Q ss_pred e-eEEEEEEEec
Q psy10160 209 D-ENAVTIRVEG 219 (558)
Q Consensus 209 ~-~~~~~l~V~~ 219 (558)
. +.++.+.|.+
T Consensus 99 ieSHsvtI~Vt~ 110 (120)
T 2aw2_A 99 IESHSTTLYVTD 110 (120)
T ss_dssp EECCCEEEEEEC
T ss_pred EEeeEEEEEEEe
Confidence 7 4777888864
|
| >2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-08 Score=83.60 Aligned_cols=83 Identities=19% Similarity=0.293 Sum_probs=59.4
Q ss_pred CCceEeeCCCcEEEEeEeec-cCCCeEEEEECCEE--------ec--------cCCceEEEcc-----CCeEEEccCCCC
Q psy10160 136 LETQVFGVGSDISIPCDVDG-YPIPQVFWYKDGQV--------IE--------NDGVHYRITE-----SNRLHINQANAT 193 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g-~P~p~i~W~~~g~~--------l~--------~~~~~~~~~~-----~~sL~I~~v~~~ 193 (558)
+....+.+|+.++|.|...+ .+.+.+.|+|.... +. ....++.+.. +.+|.|.+++.+
T Consensus 4 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~ 83 (116)
T 2or8_A 4 YVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVES 83 (116)
T ss_dssp CEEEEEETTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGG
T ss_pred cceEEEEeCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCCcc
Confidence 45667889999999999876 34567999997521 10 1123455422 247999999999
Q ss_pred CCeEEEEEEEeCCcee--eEEEEEEEe
Q psy10160 194 DSGEYRCVASNSYTSD--ENAVTIRVE 218 (558)
Q Consensus 194 D~G~Y~C~a~N~~G~~--~~~~~l~V~ 218 (558)
|+|.|.|.+.|..+.. ...+.|.|.
T Consensus 84 DsG~Y~C~v~~~~~~~~~~~~~~l~V~ 110 (116)
T 2or8_A 84 DSGLYCCRVEIPGWFNDQKVTFSLQVK 110 (116)
T ss_dssp GCEEEEEEECCSSTTCCEEEEEEEEEE
T ss_pred cCEEEEEEEEcCCcccccEEEEEEEEC
Confidence 9999999999976544 566677764
|
| >2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ... | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-08 Score=82.13 Aligned_cols=74 Identities=14% Similarity=0.288 Sum_probs=55.9
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECC--E---Eec--------cCCceEEEcc---CCeEEEccCCCCCC
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG--Q---VIE--------NDGVHYRITE---SNRLHINQANATDS 195 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g--~---~l~--------~~~~~~~~~~---~~sL~I~~v~~~D~ 195 (558)
+...|....+.+|+.++|.|.+.+.|.+.+.|+|.. . .+. ....|+.+.. ..+|.|.+++.+|+
T Consensus 6 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds 85 (109)
T 2q20_A 6 MTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDI 85 (109)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEeeCCEEEecCCCcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccCCEEEEEECCCChhhC
Confidence 344566778899999999999999888899999853 1 111 0123555432 23799999999999
Q ss_pred eEEEEEEEeC
Q psy10160 196 GEYRCVASNS 205 (558)
Q Consensus 196 G~Y~C~a~N~ 205 (558)
|.|.|.+.|.
T Consensus 86 G~Y~C~~~~~ 95 (109)
T 2q20_A 86 ATYYCQQYDN 95 (109)
T ss_dssp EEEEEEECSS
T ss_pred EEEEEEEeeC
Confidence 9999999885
|
| >2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=9.3e-09 Score=83.37 Aligned_cols=81 Identities=16% Similarity=0.303 Sum_probs=58.9
Q ss_pred ceEeeCCCcEEEEeEeeccCCC---eEEEEECCEE--------ec--------cCCceEEEcc-----CCeEEEccCCCC
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIP---QVFWYKDGQV--------IE--------NDGVHYRITE-----SNRLHINQANAT 193 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p---~i~W~~~g~~--------l~--------~~~~~~~~~~-----~~sL~I~~v~~~ 193 (558)
...+.+|+.++|.|.+.+.|.+ .+.|+|.+.. +. ....++.+.. +.+|.|.+++.+
T Consensus 3 ~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~ 82 (109)
T 2oyp_A 3 GYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLD 82 (109)
T ss_dssp EEEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCGG
T ss_pred CEEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCCh
Confidence 4567899999999999876544 3999995421 00 0122444433 248999999999
Q ss_pred CCeEEEEEEEeCCceeeEEEEEEEe
Q psy10160 194 DSGEYRCVASNSYTSDENAVTIRVE 218 (558)
Q Consensus 194 D~G~Y~C~a~N~~G~~~~~~~l~V~ 218 (558)
|+|.|.|.+.|..+.....+.|.|.
T Consensus 83 D~G~Y~C~v~~~~~~~~~~~~l~V~ 107 (109)
T 2oyp_A 83 DHGTYCCRIQFPGLMNDKKLELKLD 107 (109)
T ss_dssp GCEEEEEEECCSSTTCCEEEEEEEE
T ss_pred hCeEEEEEEEcCCcccceEEEEEEE
Confidence 9999999999988777667776663
|
| >1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-08 Score=81.53 Aligned_cols=73 Identities=19% Similarity=0.352 Sum_probs=55.2
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCCCeEEEEECC--E---Eec-c-------CCceEEEccC---CeEEEccCCCCCCe
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG--Q---VIE-N-------DGVHYRITES---NRLHINQANATDSG 196 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g--~---~l~-~-------~~~~~~~~~~---~sL~I~~v~~~D~G 196 (558)
...|....+.+|++++|.|.+.+.|.+.+.|+|.. . .+. . ...|+.+... .+|.|.+++.+|+|
T Consensus 5 ~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG 84 (108)
T 1qfw_M 5 TQSPKSMSMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGSATDFTLTISSVQAEDFA 84 (108)
T ss_dssp EEECSCEECCTTCCEEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBCSSEEEEEESSCCTTCCS
T ss_pred EEeCCeEEEcCCCCEEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcCCCEEEEEECCCChhhCE
Confidence 34566778899999999999999888899999853 1 111 0 1235554432 37999999999999
Q ss_pred EEEEEEEeC
Q psy10160 197 EYRCVASNS 205 (558)
Q Consensus 197 ~Y~C~a~N~ 205 (558)
.|.|.+.|.
T Consensus 85 ~Y~C~~~~~ 93 (108)
T 1qfw_M 85 DYHCGQTYN 93 (108)
T ss_dssp EEEEEECSS
T ss_pred EEEEEEccC
Confidence 999999885
|
| >3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=5.5e-09 Score=99.95 Aligned_cols=72 Identities=13% Similarity=0.313 Sum_probs=48.7
Q ss_pred eeCCCcEEEEeEeec-cC-CCeEEEEECCEEeccC----------CceEEEccCCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 141 FGVGSDISIPCDVDG-YP-IPQVFWYKDGQVIEND----------GVHYRITESNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 141 v~~G~~v~L~C~~~g-~P-~p~i~W~~~g~~l~~~----------~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
+.+|+.+.|.|.+.+ +| .+.+.| ++..+... +..|.+. ++|.|.....+| |.|+|.+.|..+.
T Consensus 180 ~~~g~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~--s~L~i~~~~~~~-~~ytC~v~h~~~~ 254 (267)
T 3u1s_H 180 STSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLS--SVVTVPSSSLGT-QTYICNVNHKPSN 254 (267)
T ss_dssp GEETTEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEE--EEEEEEGGGGGT-CCCEEEEEEGGGT
T ss_pred cCCCCcEEEEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEE--EEEEECchhcCC-CEEEEEEEECCCC
Confidence 357999999999988 45 456999 55444221 1122211 368898888889 9999999998776
Q ss_pred eeEEEEEEE
Q psy10160 209 DENAVTIRV 217 (558)
Q Consensus 209 ~~~~~~l~V 217 (558)
......+.+
T Consensus 255 ~~~~~~~~~ 263 (267)
T 3u1s_H 255 TKVDKKVEP 263 (267)
T ss_dssp EEEEEECCC
T ss_pred cceEEEccc
Confidence 554444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 558 | ||||
| d1yfma_ | 459 | a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomy | 1e-82 | |
| d1fuoa_ | 456 | a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: | 1e-78 | |
| d1vdka_ | 460 | a.127.1.1 (A:) Fumarase {Thermus thermophilus [Tax | 9e-72 | |
| d1j3ua_ | 462 | a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus | 3e-57 | |
| d1jswa_ | 459 | a.127.1.1 (A:) L-aspartate ammonia lyase {Escheric | 1e-52 | |
| d1c3ca_ | 429 | a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga | 9e-28 | |
| d1tj7a_ | 455 | a.127.1.1 (A:) Argininosuccinate lyase/delta-cryst | 8e-25 | |
| d1re5a_ | 448 | a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso | 2e-22 | |
| d1dofa_ | 402 | a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Py | 5e-22 | |
| d1tjva_ | 449 | a.127.1.1 (A:) Argininosuccinate lyase/delta-cryst | 7e-19 | |
| d1q5na_ | 444 | a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso | 2e-18 | |
| d1k62b_ | 459 | a.127.1.1 (B:) Argininosuccinate lyase/delta-cryst | 2e-16 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 4e-15 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 1e-13 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 2e-13 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 0.001 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 4e-12 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 1e-11 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 2e-11 | |
| d1iama1 | 103 | b.1.1.3 (A:83-185) Intercellular cell adhesion mol | 3e-11 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 4e-11 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 6e-11 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 6e-11 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 5e-04 | |
| d1iray2 | 103 | b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor | 6e-11 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 1e-10 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 1e-10 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 4e-10 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 4e-10 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 6e-10 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 7e-10 | |
| d1zxqa1 | 106 | b.1.1.3 (A:87-192) Intercellular cell adhesion mol | 1e-09 | |
| d1wwbx_ | 103 | b.1.1.4 (X:) Ligand binding domain of trkB recepto | 3e-09 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 5e-09 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 1e-08 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 1e-08 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 1e-08 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 2e-08 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 2e-04 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 2e-08 | |
| d1n26a1 | 93 | b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai | 1e-07 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 4e-07 | |
| d1biha3 | 97 | b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr | 5e-07 | |
| d1biha3 | 97 | b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr | 0.003 | |
| d2oz4a3 | 84 | b.1.1.4 (A:367-450) Intercellular adhesion molecul | 7e-07 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 9e-07 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 0.003 | |
| d2aw2a1 | 104 | b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator | 1e-06 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 1e-06 | |
| d1pd6a_ | 94 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 1e-06 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 1e-06 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 7e-04 | |
| d1iray3 | 107 | b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor | 2e-06 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 2e-06 | |
| d1ccza1 | 93 | b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter | 3e-06 | |
| d1pkoa_ | 126 | b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein ( | 4e-06 | |
| d1iray1 | 101 | b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H | 4e-06 | |
| d2ifga1 | 92 | b.1.1.4 (A:192-283) High affinity nerve growth fac | 3e-05 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 3e-05 | |
| d1olza1 | 92 | b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain { | 3e-05 | |
| d1fnla1 | 84 | b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3 | 3e-05 | |
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 3e-05 | |
| d1f2qa2 | 89 | b.1.1.4 (A:86-174) IgE high affinity receptor alph | 4e-05 | |
| d2fcba2 | 88 | b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C | 5e-05 | |
| d1fnla2 | 89 | b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C | 5e-05 | |
| d1hnga1 | 98 | b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no | 7e-05 | |
| d1tiua_ | 89 | b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re | 8e-05 | |
| d1cs6a2 | 105 | b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall | 9e-05 | |
| d2fcba1 | 85 | b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD3 | 2e-04 | |
| d1rhfa2 | 85 | b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto | 2e-04 | |
| d1f2qa1 | 82 | b.1.1.4 (A:4-85) IgE high affinity receptor alpha | 2e-04 | |
| d1vcaa2 | 90 | b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 | 8e-04 | |
| d2nxyb1 | 97 | b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Ho | 0.001 | |
| d1nbqa1 | 105 | b.1.1.1 (A:25-129) Junction adhesion molecule, JAM | 0.002 | |
| d1epfa1 | 97 | b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC | 0.002 | |
| d1f97a1 | 102 | b.1.1.1 (A:27-128) Junction adhesion molecule, JAM | 0.004 |
| >d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 459 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Fumarase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 263 bits (673), Expect = 1e-82
Identities = 149/218 (68%), Positives = 177/218 (81%)
Query: 338 ETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGP 397
+ K A +I++ TGL F++APN+FEALAAHDA+VE SGALNT+A SL KIA DIR+L SGP
Sbjct: 242 DVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGP 301
Query: 398 RCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFK 457
RCG EL LPENEPGSSIMPGKVNPTQ EALT V QVMGN+ A+T GS G FELNVFK
Sbjct: 302 RCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFK 361
Query: 458 PLIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAA 517
P++++N+L SIRLI D+A +F CV GI ANE IH LL +SLMLVTALNP IGYD A+
Sbjct: 362 PVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAAS 421
Query: 518 KIAKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDML 555
K+AK AHK+G TLK +AL+LG LTE+EF++WVVPE ML
Sbjct: 422 KVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHML 459
|
| >d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} Length = 456 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Fumarase species: Escherichia coli [TaxId: 562]
Score = 252 bits (645), Expect = 1e-78
Identities = 143/217 (65%), Positives = 175/217 (80%)
Query: 338 ETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGP 397
+ A ++A +T PF +APNKFEALA DALV+ GAL +A SLMKIAND+R+LASGP
Sbjct: 240 ARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGP 299
Query: 398 RCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFK 457
RCG+GE+S+PENEPGSSIMPGKVNPTQCEALTM+ QVMGN VA+ +GG++G+FELNVF+
Sbjct: 300 RCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFR 359
Query: 458 PLIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAA 517
P+++ N L+S+RL+AD +F C GI N E I++LL+ESLMLVTALN HIGYDKAA
Sbjct: 360 PMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAA 419
Query: 518 KIAKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDM 554
+IAK AHKEG TLK AAL LGYL+E EF+ WV PE M
Sbjct: 420 EIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQM 456
|
| >d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} Length = 460 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Fumarase species: Thermus thermophilus [TaxId: 274]
Score = 235 bits (599), Expect = 9e-72
Identities = 125/220 (56%), Positives = 154/220 (70%)
Query: 338 ETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGP 397
A +AE TGLPF+ A N+F ALAAHD LV V GA+ T+A +LMKI ND+R+LASGP
Sbjct: 240 GELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGP 299
Query: 398 RCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFK 457
G+GE+++P NEPGSSIMPGKVNPTQ EALTMV +V GN V GS G+F+LNV+K
Sbjct: 300 YAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYK 359
Query: 458 PLIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAA 517
P++ + L SI L+AD+ +F GI N E I L ++ ML TALN IGYDKAA
Sbjct: 360 PVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNKAIGYDKAA 419
Query: 518 KIAKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGP 557
+I K A KE TLK AAL+LGYLTEEEF++ VVP + P
Sbjct: 420 EIVKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLAKP 459
|
| >d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} Length = 462 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: L-aspartate ammonia lyase species: Bacillus sp., ym55-1 [TaxId: 1409]
Score = 196 bits (499), Expect = 3e-57
Identities = 108/403 (26%), Positives = 174/403 (43%), Gaps = 35/403 (8%)
Query: 162 FWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSY------TSDENAVTI 215
F Q ++ E + + G Y ++ NS+ T+D
Sbjct: 86 FIVDPIQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTAT 145
Query: 216 RVEGIFIHPSCRDLPLFANCKLIVEGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVE 275
I + L + + + G +
Sbjct: 146 H---IAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYAR 202
Query: 276 AEAAAADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDPNDRQALNIVSIFYFTYLVKLSE 335
R R + N T L+ + +
Sbjct: 203 VI------ARDIERIANTRNNLYDINMGATAVGTGLNADPEYISIV-------------- 242
Query: 336 LLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLAS 395
+A+ +G P +SA + +A D EVS AL +++ KIAND+R +AS
Sbjct: 243 ------TEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMAS 296
Query: 396 GPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNV 455
GPR GL E+ LP +PGSSIMPGKVNP E + VA QV GN + +T G FELNV
Sbjct: 297 GPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNV 356
Query: 456 FKPLIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDK 515
+P++ N+++SI ++ + +FT+ C+ GI ANEE + + +S+ ++TA+NPH+GY+
Sbjct: 357 MEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYET 416
Query: 516 AAKIAKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDMLGPK 558
AAK+A+ A+ G +++ +K G LTEE+ N+ + P +M+ P
Sbjct: 417 AAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHPG 459
|
| >d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} Length = 459 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: L-aspartate ammonia lyase species: Escherichia coli [TaxId: 562]
Score = 183 bits (466), Expect = 1e-52
Identities = 80/210 (38%), Positives = 120/210 (57%)
Query: 338 ETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGP 397
K+AE+TG P A + EA + A V V GAL +AV + KI ND+R L+SGP
Sbjct: 246 SPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGP 305
Query: 398 RCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFK 457
R GL E++LPE + GSSIMP KVNP E + V +V+GN VT+ G +LNV +
Sbjct: 306 RAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVME 365
Query: 458 PLIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAA 517
P+I + S+ ++ ++ +KC++GI AN+E ++ S+ +VT LNP IG+
Sbjct: 366 PVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGHHNGD 425
Query: 518 KIAKTAHKEGTTLKVAALKLGYLTEEEFNK 547
+ K + G +++ L+ G LTE E +
Sbjct: 426 IVGKICAETGKSVREVVLERGLLTEAELDD 455
|
| >d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Length = 429 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Adenylosuccinate lyase species: Thermotoga maritima [TaxId: 2336]
Score = 113 bits (284), Expect = 9e-28
Identities = 41/223 (18%), Positives = 68/223 (30%), Gaps = 21/223 (9%)
Query: 351 LPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLP--E 408
+ D L VA + +IA +IR L R + E+ P +
Sbjct: 200 YLGLKPEPVSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQ---RTEVLEVEEPFRK 256
Query: 409 NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSI 468
+ GSS MP K NP CE LT ++ + ++ E ++ + V
Sbjct: 257 GQRGSSAMPHKKNPITCERLTGLSRMMRAYVDP-SLENIALWHERDISHSSVERYVFPDA 315
Query: 469 RLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTA-----------LNPHIGYDKAA 517
V + NEE + + + + LV + L YD
Sbjct: 316 TQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQ 375
Query: 518 KIAKTAHKEGTTLKVAALK----LGYLTEEEFNKWVVPEDMLG 556
+ A L+ +T+EE + L
Sbjct: 376 RNALKTWNSEKHFLEYLLEDEEVKKLVTKEELEELFDISYYLK 418
|
| >d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} Length = 455 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Argininosuccinate lyase/delta-crystallin species: Escherichia coli [TaxId: 562]
Score = 105 bits (262), Expect = 8e-25
Identities = 36/227 (15%), Positives = 72/227 (31%), Gaps = 17/227 (7%)
Query: 345 IAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGEL 404
+A G + N ++++ D ++E+ A V L + A D+ F +G +
Sbjct: 210 LAGWLGFASATR-NSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELS 268
Query: 405 SLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNV 464
GSS+MP K NP E + +V G + + N +
Sbjct: 269 --DRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGL 326
Query: 465 LRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHI---------GYDK 515
++ D + GI + T L ++ +
Sbjct: 327 FDALDTWLDCLHMA-ALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPFREAHHI 385
Query: 516 AAKIAKTAHKEGTTLKVAAL----KLGYLTEEEFNKWVVPEDMLGPK 558
+ A ++G L+ L K + +E+ + + L +
Sbjct: 386 VGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPILSLQSCLDKR 432
|
| >d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} Length = 448 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) species: Pseudomonas putida, strain KT2440 [TaxId: 303]
Score = 98.2 bits (243), Expect = 2e-22
Identities = 55/230 (23%), Positives = 75/230 (32%), Gaps = 20/230 (8%)
Query: 341 CAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCG 400
A +AE L P D LVE + L VA SL K DI L
Sbjct: 207 VAEALAEQLKLTLPEQPWHT----QRDRLVEFASVLGLVAGSLGKFGRDISLLMQTEAGE 262
Query: 401 LGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLI 460
+ E S + GSS MP K NP L A +V G + H
Sbjct: 263 VFEPS-APGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLSTLFAAMPQEHERSL-GLWHA 320
Query: 461 VSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTA------LNPHIGYD 514
L I + A G+ + + R L + LV A L +G D
Sbjct: 321 EWETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSIVLAQRLGRD 380
Query: 515 KAAKI----AKTAHKEGTTLKVAALK----LGYLTEEEFNKWVVPEDMLG 556
+A + + A E L+ L+ EE ++ + P LG
Sbjct: 381 RAHHLLEQCCQRAVAEQRHLRAVLGDEPQVSAELSGEELDRLLDPAHYLG 430
|
| >d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 402 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Adenylosuccinate lyase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 96.2 bits (238), Expect = 5e-22
Identities = 33/202 (16%), Positives = 61/202 (30%), Gaps = 17/202 (8%)
Query: 341 CAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCG 400
+ +A ++ ++ AL +A ++A +IR L+
Sbjct: 194 GLEVRRRVAERLGLPHHVITTQVAPRESFAVLASALALMAAVFERLAVEIRELSRPEIG- 252
Query: 401 LGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLI 460
+ E GSS MP K NPT E + +A V V E ++
Sbjct: 253 ----EVVEGGGGSSAMPHKANPTASERIVSLARYVR-ALTHVAFENVALWHERDLTNSAN 307
Query: 461 VSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTA-----------LNP 509
+ L D + + + +EE I L ++L + +
Sbjct: 308 ERVWIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASR 367
Query: 510 HIGYDKAAKIAKTAHKEGTTLK 531
Y KA ++ +
Sbjct: 368 AEAYKKAKEVKALTFEYQKWPV 389
|
| >d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]} Length = 449 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Argininosuccinate lyase/delta-crystallin species: Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]
Score = 86.9 bits (214), Expect = 7e-19
Identities = 40/270 (14%), Positives = 79/270 (29%), Gaps = 13/270 (4%)
Query: 297 WSLRQAFTTCYPVNLDPNDRQALNIVSIFYFTYLVKLSELLETKCAAKIAELTGLPFKSA 356
Q + ++R I ++ +
Sbjct: 151 IRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASIS 210
Query: 357 PNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIM 416
N +A++ D +VE + + L K+A D+ ++ L GSS+M
Sbjct: 211 LNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLS--DAFSTGSSLM 268
Query: 417 PGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIRLIADSAT 476
P K NP E + A +V G ++ + N V + +
Sbjct: 269 PQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVFDVVDTLTAVLQ 328
Query: 477 AFTDKCVSGIVANEENIHRLLHE------SLMLVTALNP-HIGYDKAAKIAKTAHKEGTT 529
T + ++ E L E +L LV P + + K A +G T
Sbjct: 329 VATGVISTLQISKENMEKALTPEMLATDLALYLVRKGVPFRQAHTASGKAVHLAETKGIT 388
Query: 530 LKVAAL----KLGYLTEEEFNKWVVPEDML 555
+ +L + + ++ + +
Sbjct: 389 INKLSLEDLKSISPQFSSDVSQVFNFVNSV 418
|
| >d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Length = 444 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) species: Acinetobacter calcoaceticus [TaxId: 471]
Score = 85.5 bits (210), Expect = 2e-18
Identities = 42/190 (22%), Positives = 71/190 (37%), Gaps = 16/190 (8%)
Query: 381 VSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHV 440
++ K+A D + + E + + GSS MP K NP ++ A +V
Sbjct: 244 GNVGKMARDWSLMMQTEIAEVFEPT-AKGRGGSSTMPHKRNPVAAASVLAAANRVPALMS 302
Query: 441 AVTIGGSNGHFELNVFKPLIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHES 500
++ E ++ L I + A T + G+ N EN+H+ + +
Sbjct: 303 SIYQS-MVQEHERSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECT 361
Query: 501 LMLV------TALNPHIGYDKAAKI----AKTAHKEGTTLKVAALKL----GYLTEEEFN 546
L+ AL PH+G A + KTA E LK ++ Y + +
Sbjct: 362 HGLIMAEAVMMALAPHMGRLNAHHVVEAACKTAVAEQKHLKDIISQVDEVKQYFNPSQLD 421
Query: 547 KWVVPEDMLG 556
+ PE LG
Sbjct: 422 EIFKPESYLG 431
|
| >d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} Length = 459 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Argininosuccinate lyase/delta-crystallin species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.6 bits (195), Expect = 2e-16
Identities = 34/209 (16%), Positives = 65/209 (31%), Gaps = 15/209 (7%)
Query: 356 APNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSI 415
N +A + D + E + L ++A D+ + + GSS+
Sbjct: 221 TLNSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLILYCTKEFSFVQLS--DAYSTGSSL 278
Query: 416 MPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIRLIADSA 475
MP K NP E + A +V G + + N V ++
Sbjct: 279 MPRKKNPDSLELIRSKAGRVFGRCAGLLMTLKGLPSTYNKDLQEDKEAVFEVSDTMSA-V 337
Query: 476 TAFTDKCVSGIVANEENIHRLLHESLM-------LVTALNP-HIGYDKAAKIAKTAHKEG 527
+S + ++EN+ + L ++ LV P ++ + K A +G
Sbjct: 338 LQVATGVISTLQIHQENMGQALSPDMLATDLAYYLVRKGMPFRQAHEASGKAVFMAETKG 397
Query: 528 TTLKVAAL----KLGYLTEEEFNKWVVPE 552
L +L + L +
Sbjct: 398 VALNQLSLQELQTISPLFSGDVICVWDYR 426
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 69.1 bits (168), Expect = 4e-15
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR---LHINQA 190
+ + + C G P+P + W K+G+ + + N+ L +
Sbjct: 10 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 69
Query: 191 NATDSGEYRCVASNSYTSDENAVTIRV 217
+D G Y CV N Y S + + V
Sbjct: 70 VPSDKGNYTCVVENEYGSINHTYHLDV 96
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.3 bits (158), Expect = 1e-13
Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 2/92 (2%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHY--RITESNRLHINQANAT 193
E Q G + + V G W K + I+ ++L I A
Sbjct: 7 PEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQE 66
Query: 194 DSGEYRCVASNSYTSDENAVTIRVEGIFIHPS 225
G Y + N S + V + V P+
Sbjct: 67 HCGCYTLLVENKLGSRQAQVNLTVVDKPDPPA 98
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 63.6 bits (154), Expect = 2e-13
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHIN 188
P + V G D++IPC V G P P V W + + + + L I
Sbjct: 3 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVT---DSGLVIK 59
Query: 189 QANATDSGEYRCVASNSYTSDENAVTIRV 217
D G Y C A+N + ++V
Sbjct: 60 GVKNGDKGYYGCRATNEHGDKYFETLVQV 88
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 35.9 bits (82), Expect = 0.001
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 8 NYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+ + L IK V+ G Y C+A N G + +Q
Sbjct: 48 RATVTDSGLVIKGVKNGDKGYYGCRATNEHGDK-YFETLVQ 87
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 60.7 bits (146), Expect = 4e-12
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN----DGVHYRITESNR 184
VN T +G +++ CD DG+P P + W KDG+ IEN D H +S+
Sbjct: 10 QSIVNATAN-----LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSE 64
Query: 185 LHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
L I + D EY C+A N + ++ ++V
Sbjct: 65 LTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 59.1 bits (142), Expect = 1e-11
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH---INQANA 192
+++Q G GSD V G P P+ WYK+G IE Y + + I
Sbjct: 11 IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTG 70
Query: 193 TDSGEYRCVASNSYTSDENAVTIRVEG 219
DS A N + + V+
Sbjct: 71 EDSASIMVKAINIAGETSSHAFLLVQA 97
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.0 bits (139), Expect = 2e-11
Identities = 25/84 (29%), Positives = 30/84 (35%), Gaps = 1/84 (1%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES-NRLHINQANAT 193
Q F G D I CDV P + W G+ + I S N L I T
Sbjct: 7 APTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKT 66
Query: 194 DSGEYRCVASNSYTSDENAVTIRV 217
D G YRC + N I+V
Sbjct: 67 DEGTYRCEGRILARGEINFKDIQV 90
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.0 bits (139), Expect = 3e-11
Identities = 11/96 (11%), Positives = 26/96 (27%), Gaps = 4/96 (4%)
Query: 126 YLVPVKVNITLETQVFGVGSDISIPCDVDG---YPIPQVFWYKDGQVIENDGVHYRITES 182
Y P +V + VG +++ C V+G V + + ++ + E
Sbjct: 1 YWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEV 60
Query: 183 NRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ ++ C +
Sbjct: 61 T-TTVLVRRDHHGAQFSCRTELDLRPQGLELFENTS 95
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 57.6 bits (138), Expect = 4e-11
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANAT--D 194
+ G CD DG P+P V W + GQV+ H T + ++ D
Sbjct: 7 RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASD 66
Query: 195 SGEYRCVASNSYTSDENAVTIRVE 218
G Y V NS E T+ ++
Sbjct: 67 EGNYSVVVENSEGKQEAEFTLTIQ 90
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 57.7 bits (138), Expect = 6e-11
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDG---------------QVIENDGVHYRITESNRLHI 187
VG D+ C V P + W K +V++ GV+ E L+I
Sbjct: 19 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYI 78
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRV 217
D+GEY C+A NS ++ + V
Sbjct: 79 RNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.9 bits (136), Expect = 6e-11
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRL----HINQANATDSGEY 198
G + + C V+G P + W KDG V++N Y + +D+G Y
Sbjct: 10 QGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRY 69
Query: 199 RCVASNSY-TSDENAVTIRVEG 219
C + T V + VEG
Sbjct: 70 WCQVEDGGETEISQPVWLTVEG 91
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 5e-04
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 17 TIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
++K VE G Y CQ +G +S V L
Sbjct: 57 SLKSVERSDAGRYWCQVEDGGETEISQPVWLT 88
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.2 bits (137), Expect = 6e-11
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 138 TQVFGVGSDISIPC------DVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQAN 191
Q V D + C + +P++ WYKD + + D +H+ +RL +
Sbjct: 8 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHF-SGVKDRLIVMNVA 66
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRVE 218
G Y C AS +Y + +T +E
Sbjct: 67 EKHRGNYTCHASYTYLGKQYPITRVIE 93
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 56.0 bits (134), Expect = 1e-10
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDS 195
+ +GSD+ C G P P V W + + L ++ DS
Sbjct: 8 ITDTEADIGSDLRWSCVASGKPRPAVRWLR--DGQPLASQNRIEVSGGELRFSKLVLEDS 65
Query: 196 GEYRCVASNSYTSDENAVTIRVE 218
G Y+CVA N + + + + V+
Sbjct: 66 GMYQCVAENKHGTVYASAELTVQ 88
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 56.4 bits (135), Expect = 1e-10
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSG 196
G +++ C G P+PQ+ W K + ++ LHI + D G
Sbjct: 13 ADTYALTGQMVTLECFAFGNPVPQIKWRKL----DGSQTSKWLSSEPLLHIQNVDFEDEG 68
Query: 197 EYRCVASNSYTSDENAVTIRVE 218
Y C A N D I +
Sbjct: 69 TYECEAENIKGRDTYQGRIIIH 90
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.9 bits (131), Expect = 4e-10
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG--VHYRITESNRLHINQAN 191
+ G G + C V P V W+KD + ++ + L IN+
Sbjct: 6 VKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVK 65
Query: 192 ATDSGEYRCVASNSYTSDENAVTIRVEG 219
D GEY A NSY + E V + V
Sbjct: 66 GDDKGEYTVRAKNSYGTKEEIVFLNVTR 93
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.0 bits (131), Expect = 4e-10
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 12/101 (11%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESN---- 183
P K I++ + V +G+ + C DG P + W+KDG + N
Sbjct: 3 PSKPTISVPSSVT-IGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 61
Query: 184 ------RLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
L + A DSGEY C A N Y + + ++
Sbjct: 62 IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 102
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.6 bits (130), Expect = 6e-10
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 149 IPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE---------SNRLHINQANATDSGEYR 199
IP VDG P P + W +G V+ + L +NQ ++G Y
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 200 CVASNSYTSDENAVTIRV 217
+A+N + ++
Sbjct: 80 LLAANPFGQASASIMAAF 97
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.3 bits (129), Expect = 7e-10
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQ---------VIENDGVHYR 178
P K + + + +G+ + C DG P + W+KDG ++ +
Sbjct: 3 PSKPTVNIPSSAT-IGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 61
Query: 179 ITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ L + +A+D+GEY C A N Y + + +R+E
Sbjct: 62 NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 101
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.8 bits (128), Expect = 1e-09
Identities = 13/96 (13%), Positives = 30/96 (31%), Gaps = 7/96 (7%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDG---YPIPQVFWYKDGQVIENDGVHY----RITE 181
P +V +TL+ + VG +I C V +F ++ + + +
Sbjct: 2 PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEA 61
Query: 182 SNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + + C+A S + +
Sbjct: 62 TATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKH 97
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.7 bits (125), Expect = 3e-09
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 10/99 (10%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR--- 184
+ IP V G P P + W+ +G ++
Sbjct: 3 FAPTITFLESPTS---DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59
Query: 185 ----LHINQANATDSGEYRCVASNSYTSDENAVTIRVEG 219
L ++ ++G+Y +A N Y DE ++ G
Sbjct: 60 YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 51.8 bits (123), Expect = 5e-09
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 3/96 (3%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH- 186
V T+ GS C V+GYP P+V W+KD ++ +
Sbjct: 7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS 66
Query: 187 --INQANATDSGEYRCVASNSYTSDENAVTIRVEGI 220
I++ D +Y C A NS + VE +
Sbjct: 67 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 102
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.7 bits (120), Expect = 1e-08
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 129 PVKVNIT-LETQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIENDGVHYRITESNRLH 186
P+ V + +Q G+D++ C P + W + + + L
Sbjct: 1 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS---RAMDFNGILT 57
Query: 187 INQANATDSGEYRCVASNSYTSDENAVTIRVE 218
I +D+G Y C SN + D+ T+ V+
Sbjct: 58 IRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (119), Expect = 1e-08
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN----RL 185
+ V LE G + + C+V V W+K+G+ I L
Sbjct: 1 IMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHIL 59
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIR 216
I A D+ EY + + +S + +V ++
Sbjct: 60 IIEGATKADAAEYSVMTTGGQSSAKLSVDLK 90
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.7 bits (120), Expect = 1e-08
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 9/97 (9%)
Query: 127 LVPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT------ 180
P +V E ++ + I V G P P + W +GQ + + +
Sbjct: 3 YYPPRVVSLEEPEL---RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEI 59
Query: 181 ESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
L N+ ++G Y +A N + +
Sbjct: 60 SEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 96
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 49.9 bits (118), Expect = 2e-08
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 142 GVGSDISIPCDVDGYPIPQVFWYKD-GQVIENDGVHYRITESNRLHINQANATDSGEYRC 200
+++ C P W + ++ YR+ + + N A D+G Y+C
Sbjct: 20 SAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQC 79
Query: 201 VASNSY 206
VA+N+
Sbjct: 80 VATNAR 85
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 38.7 bits (89), Expect = 2e-04
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 14 NMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
+++ V+ + G+Y C A N G VS +L+
Sbjct: 62 DLVISNPVKAKDAGSYQCVATNARGTVVSREASLR 96
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 2e-08
Identities = 17/112 (15%), Positives = 27/112 (24%), Gaps = 31/112 (27%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR------------ 184
+T V G+ + + + G P P V W K
Sbjct: 17 DTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKK 76
Query: 185 -------------------LHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ A D G Y N D+ +T++V
Sbjct: 77 LLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.2 bits (111), Expect = 1e-07
Identities = 11/85 (12%), Positives = 19/85 (22%), Gaps = 3/85 (3%)
Query: 127 LVPV---KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN 183
L P + G +++ C + +
Sbjct: 1 LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGR 60
Query: 184 RLHINQANATDSGEYRCVASNSYTS 208
RL + DSG Y C +
Sbjct: 61 RLLLRSVQLHDSGNYSCYRAGRPAG 85
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.1 bits (108), Expect = 4e-07
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 2/93 (2%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQ--VFWYKDGQVIENDGVHYRITESNRL 185
+ K+ G ++ D G P P G + + + + + +
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
A DSG Y+ N DE + V+
Sbjct: 61 FFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 45.7 bits (107), Expect = 5e-07
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 5/80 (6%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIEN----DGVHYRITESNRLHINQANATDSGEY 198
G I C P+ ++K+G+ + + T RL D G Y
Sbjct: 17 AGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVY 76
Query: 199 RCVASNSY-TSDENAVTIRV 217
C N ++++ + V
Sbjct: 77 TCEVDNGVGKPQKHSLKLTV 96
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 35.3 bits (80), Expect = 0.003
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 1 MIQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQAL 50
+ + + L K PE G YTC+ NG+G+ ++ L +
Sbjct: 48 PEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 97
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 7e-07
Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 11/82 (13%)
Query: 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSG 196
+ S + C G P+P++ KDG G G
Sbjct: 12 GNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG-----------ESVTVTRDLEG 60
Query: 197 EYRCVASNSYTSDENAVTIRVE 218
Y C A ++ VT+ V
Sbjct: 61 TYLCRARSTQGEVTREVTVNVL 82
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 9e-07
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 6/90 (6%)
Query: 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR-----LHIN 188
+ ++ G + C G + + G + + + S+R ++
Sbjct: 6 LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVV 65
Query: 189 QANATDSGEYRCVASNSYTSDE-NAVTIRV 217
D+G+YRC+ N + V
Sbjct: 66 NTTKRDAGKYRCMIRTEGGVGISNYAELVV 95
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.0 bits (79), Expect = 0.003
Identities = 6/40 (15%), Positives = 9/40 (22%)
Query: 8 NYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47
+ + G Y C G +S L
Sbjct: 54 SSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAEL 93
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 1e-06
Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 10/102 (9%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYP-IPQVFWYKDGQVIENDGVHYRITESNR-- 184
V + + G + C V P V W K + +
Sbjct: 3 VQLYIK-RQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN 61
Query: 185 -----LHINQANATDSGEYRCVASNSYTSDE-NAVTIRVEGI 220
LH D+G YRC A+ E ++ T+ V +
Sbjct: 62 ISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDV 103
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 1e-06
Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 14/97 (14%)
Query: 136 LETQVFGVGSDISIPCDVDGYPI---PQVFWYKDGQVIENDGVHYRITESNR-------- 184
+ VG I+ V G + P V W+K V + V + +
Sbjct: 11 PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVY 70
Query: 185 ---LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
LHI A +G YRC S D + + V
Sbjct: 71 LFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (105), Expect = 1e-06
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 144 GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRC 200
G I + ++ +V W K+GQ I+ G Y L I+Q + D Y+C
Sbjct: 21 GHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQC 79
Query: 201 VASNSYTS 208
V S
Sbjct: 80 VVGGEKCS 87
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 44.7 bits (104), Expect = 1e-06
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
Query: 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNR--LHIN 188
+ +F + + C ++G + +K N H + L
Sbjct: 4 VLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFL 63
Query: 189 QANATDSGEYRCVASNSY-TSDENAVTIRV 217
+ A+D G Y+C A + ++ R
Sbjct: 64 RPQASDEGHYQCFAETPAGVASSRVISFRK 93
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 36.9 bits (84), Expect = 7e-04
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 16 LTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48
L R + G Y C A G A S ++ +
Sbjct: 60 LVFLRPQASDEGHYQCFAETPAGVASSRVISFR 92
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 2e-06
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 15/104 (14%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE------- 181
PV V+ ET +GS I + C+V G +W +G VI+ D
Sbjct: 2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61
Query: 182 -------SNRLHINQANATDSG-EYRCVASNSYTSDENAVTIRV 217
L+I++ + + C A N++ D + +
Sbjct: 62 NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 2e-06
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 10/99 (10%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQV------IENDGVHYRITES 182
P +V ++ G + C + P + + + + ++ S
Sbjct: 2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61
Query: 183 NR---LHINQANATD-SGEYRCVASNSYTSDENAVTIRV 217
LHI N G+YRC ++S SD+ +T+RV
Sbjct: 62 QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.8 bits (102), Expect = 3e-06
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 14/90 (15%)
Query: 139 QVFG-VGSDISIPCDVDGYPIPQVFWYKDGQVIEN------------DGVHYRITESNRL 185
Q++G V +++ P+ +V W K + Y T S L
Sbjct: 4 QIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62
Query: 186 HINQANATDSGEYRCVASNSYTSDENAVTI 215
I ++D EY + N + + + +
Sbjct: 63 TIYNLTSSDEDEYEMESPNITDTMKFFLYV 92
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.3 bits (103), Expect = 4e-06
Identities = 19/110 (17%), Positives = 30/110 (27%), Gaps = 27/110 (24%)
Query: 143 VGSDISIPCDVDGYPIPQVFWYK-----------------DGQVIENDGVHYRITESNR- 184
VG + +PC + D + R
Sbjct: 16 VGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKES 75
Query: 185 -------LHINQANATDSGEYRCVASNSYTSDENAVTIRVEG--IFIHPS 225
L I +D G Y C + +E AV ++VE +I+P
Sbjct: 76 IGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWINPG 125
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (101), Expect = 4e-06
Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 3/83 (3%)
Query: 138 TQVFGVGSDISIPCDVD-GYPIPQVFWYKD--GQVIENDGVHYRITESNRLHINQANATD 194
V PC ++ + WYKD + + +L A D
Sbjct: 11 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVED 70
Query: 195 SGEYRCVASNSYTSDENAVTIRV 217
SG Y CV NS ++ +
Sbjct: 71 SGHYYCVVRNSSYCLRIKISAKF 93
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 3e-05
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHI 187
VP + + + VG D+ + C V+G + Q W + S L +
Sbjct: 2 VPT-LKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 60
Query: 188 -NQANATDSGEYRCVASNSYTSDENAVTIRV 217
N + + C A N E +V + V
Sbjct: 61 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 91
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 3e-05
Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 14/97 (14%)
Query: 136 LETQVFGVGSDISIPCDVDGYPI---PQVFWYKDGQVIENDGVHYRITESNR-------- 184
+ VG DI+ V + P + W+K + +
Sbjct: 7 PQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVY 66
Query: 185 ---LHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218
+ I +A +G YRC + D + + V
Sbjct: 67 TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH 103
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 3e-05
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATD 194
+ F G + C +VFW V++ + Y + L I + D
Sbjct: 3 SYRQHFFKHGGTAELKCSQKSNL-ARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGD 61
Query: 195 SGEYRCVASNSYTSDENAVTIRV 217
SG Y+C++ + +
Sbjct: 62 SGVYQCLSEERVKNKTVFQVVAK 84
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Score = 40.7 bits (94), Expect = 3e-05
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 131 KVNITLETQVFGV--GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHIN 188
K + LE Q + V +++ C P + + ++++ I+
Sbjct: 5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNE-------SLISSQASSYFID 57
Query: 189 QANATDSGEYRCVASNSYTSDENAVTIRV 217
A DSGEYRC + S SD V + V
Sbjct: 58 AATVNDSGEYRCQTNLSTLSD--PVQLEV 84
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 3e-05
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 10/95 (10%)
Query: 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWY---------KDGQVIENDGVHYRITESNRL 185
+ +TQ G I C + P P + + + + L
Sbjct: 12 STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTL 71
Query: 186 HINQAN-ATDSGEYRCVASNSYTSDENAVTIRVEG 219
I+ A Y C A NS+ SD + ++ +G
Sbjct: 72 TISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG 106
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 4e-05
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 139 QVFGVGSDISIPCDVDGY-PIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGE 197
+V G + + C + +V +YKDG+ E++ + I A DSG
Sbjct: 10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEA------LKYWYENHNISITNATVEDSGT 63
Query: 198 YRCVASNSYTSDE-NAVTIRV 217
Y C E + I V
Sbjct: 64 YYCTGKVWQLDYESEPLNITV 84
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Score = 39.9 bits (92), Expect = 5e-05
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 134 ITLET--QVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQA 190
+ L+T F G I + C P+ +V ++++G+ + + A
Sbjct: 3 LVLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNFSIPQ------A 56
Query: 191 NATDSGEYRCVASNSYTSDE-NAVTIRVEG 219
N + SG+Y C + YT VTI V+
Sbjct: 57 NHSHSGDYHCTGNIGYTLYSSKPVTITVQA 86
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Score = 39.9 bits (92), Expect = 5e-05
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 8/81 (9%)
Query: 139 QVFGVGSDISIPCDVDGY-PIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGE 197
VF I + C + +V + ++G+ + + I +A DSG
Sbjct: 12 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFH------IPKATLKDSGS 65
Query: 198 YRCVASNSYTSDE-NAVTIRV 217
Y C + V I +
Sbjct: 66 YFCRGLVGSKNVSSETVNITI 86
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.7 bits (92), Expect = 7e-05
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 12/91 (13%)
Query: 139 QVFG-VGSDISIPC-------DVD----GYPIPQVFWYKDGQVIENDGVHYRITESNRLH 186
V+G +G I++ D+D V +K + I + L
Sbjct: 4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLK 63
Query: 187 INQANATDSGEYRCVASNSYTSDENAVTIRV 217
I DSG Y ++ + + +
Sbjct: 64 IKNLTRDDSGTYNVTVYSTNGTRILNKALDL 94
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Score = 39.4 bits (91), Expect = 8e-05
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 7/93 (7%)
Query: 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH--YRITESNRLHI 187
++V L VG ++ P W GQ + + + L +
Sbjct: 2 IEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILIL 60
Query: 188 NQANATDSGEYRCVASNSYTSDENAVTIRVEGI 220
+ +GE A+N+ ++ ++V+ +
Sbjct: 61 HNCQLGMTGEVSFQAANAKSA----ANLKVKEL 89
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 39.6 bits (91), Expect = 9e-05
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 4/96 (4%)
Query: 125 GYLVPVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQ--VIENDGVHYRITE 181
G+L + G + C YP W + I DG +
Sbjct: 1 GFLQEFSAE-ERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQT 59
Query: 182 SNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ L+I + A+D G Y C A++ +V +
Sbjct: 60 TGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKF 95
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Score = 38.4 bits (88), Expect = 2e-04
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 11/91 (12%)
Query: 129 PVKVNITLETQVFGV--GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLH 186
P K + LE Q V +++ C P + + +
Sbjct: 2 PPKAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPS-------Y 54
Query: 187 INQANATDSGEYRCVASNSYTSDENAVTIRV 217
+AN DSGEY C + SD V + V
Sbjct: 55 RFKANNNDSGEYTCQTGQTSLSD--PVHLTV 83
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (88), Expect = 2e-04
Identities = 12/92 (13%), Positives = 26/92 (28%), Gaps = 10/92 (10%)
Query: 128 VPVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHYRITESNRLH 186
VP + + + + C+ + W++ I +
Sbjct: 1 VPF-FTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP-------APSPSV 52
Query: 187 INQANATDSGEYRCVASNSY-TSDENAVTIRV 217
+N T S + C A N + T+ +
Sbjct: 53 LNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 84
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 2e-04
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 131 KVNITLETQVFGV--GSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHIN 188
K ++L + G ++++ C+ + + + + + L+I
Sbjct: 1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS-------LNIV 53
Query: 189 QANATDSGEYRCVASNSYTSDENAVTIRV 217
A DSGEY+C S+ V + V
Sbjct: 54 NAKFEDSGEYKCQHQQVNESE--PVYLEV 80
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (83), Expect = 8e-04
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 131 KVNITLETQVFG-VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQ 189
K+ T E++ +G +S+ C G P W N V T S L +N
Sbjct: 2 KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTS-TLTMNP 60
Query: 190 ANATDSGEYRCVASNSYTSDENAVTIRV 217
+ + Y C A+ E + + +
Sbjct: 61 VSFGNEHSYLCTATCESRKLEKGIQVEI 88
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (83), Expect = 0.001
Identities = 16/94 (17%), Positives = 25/94 (26%), Gaps = 20/94 (21%)
Query: 137 ETQVFG-VGSDISIPCDVDGYPIPQVFWYKDGQVIE---------------NDGVHYRIT 180
+ V G G + + C Q W Q+ ND R +
Sbjct: 1 KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 60
Query: 181 ESNR----LHINQANATDSGEYRCVASNSYTSDE 210
++ L I DS Y C + +
Sbjct: 61 LWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQ 94
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (82), Expect = 0.002
Identities = 14/99 (14%), Positives = 28/99 (28%), Gaps = 10/99 (10%)
Query: 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWY----------KDGQVIENDGVHYR 178
V V+ + + + + C G+ P+V W I
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 179 ITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217
+ D+G Y C+ S + V +++
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL 102
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.8 bits (81), Expect = 0.002
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT------ESN 183
++V+I VG C V G + + + RI+ +S+
Sbjct: 1 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 60
Query: 184 RLHINQANATDSGEYRCVASNSYTSDENA-VTIRV 217
L I AN D+G Y+CV + + A V +++
Sbjct: 61 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 95
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 34.7 bits (78), Expect = 0.004
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 1 MIQVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQAL 50
+ ++ + + +T V + G YTC G+ ++ L L
Sbjct: 52 ITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL 102
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 558 | |||
| d1yfma_ | 459 | Fumarase {Baker's yeast (Saccharomyces cerevisiae) | 100.0 | |
| d1vdka_ | 460 | Fumarase {Thermus thermophilus [TaxId: 274]} | 100.0 | |
| d1fuoa_ | 456 | Fumarase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1j3ua_ | 462 | L-aspartate ammonia lyase {Bacillus sp., ym55-1 [T | 100.0 | |
| d1jswa_ | 459 | L-aspartate ammonia lyase {Escherichia coli [TaxId | 100.0 | |
| d1re5a_ | 448 | 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) { | 100.0 | |
| d1q5na_ | 444 | 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) { | 100.0 | |
| d1c3ca_ | 429 | Adenylosuccinate lyase {Thermotoga maritima [TaxId | 100.0 | |
| d1f1oa_ | 408 | Adenylosuccinate lyase {Bacillus subtilis [TaxId: | 100.0 | |
| d1tj7a_ | 455 | Argininosuccinate lyase/delta-crystallin {Escheric | 100.0 | |
| d1k62b_ | 459 | Argininosuccinate lyase/delta-crystallin {Human (H | 100.0 | |
| d1tjva_ | 449 | Argininosuccinate lyase/delta-crystallin {Domestic | 100.0 | |
| d1dofa_ | 402 | Adenylosuccinate lyase {Archaeon Pyrobaculum aerop | 100.0 | |
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.71 | |
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 99.69 | |
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 99.68 | |
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.67 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 99.66 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.66 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.65 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.63 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.62 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.59 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 99.58 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.58 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 99.57 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 99.57 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 99.57 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 99.57 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 99.56 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 99.56 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 99.55 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 99.54 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.54 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.52 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 99.52 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.52 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.5 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.49 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 99.49 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 99.49 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 99.48 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 99.47 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 99.47 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.47 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 99.46 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 99.45 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 99.44 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.44 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.44 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 99.42 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 99.41 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 99.41 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 99.41 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 99.39 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 99.39 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.39 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 99.39 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.38 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 99.37 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 99.37 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 99.35 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 99.32 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.29 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.29 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 99.26 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 99.26 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.26 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 99.25 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.24 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 99.14 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 98.94 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 98.94 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 98.83 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 98.79 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 98.5 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.34 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.31 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 98.26 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.26 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.25 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 98.23 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.23 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 98.23 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 98.23 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.23 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 98.21 | |
| d1vcaa1 | 109 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 98.21 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.21 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 98.21 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 98.2 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.19 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 98.19 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 98.19 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.18 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 98.18 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 98.16 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.12 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.12 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.11 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.11 | |
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 98.11 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.09 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 98.06 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.05 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 98.05 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.03 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 98.03 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 98.02 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.02 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 98.01 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 97.99 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 97.99 | |
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 97.98 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 97.97 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 97.96 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 97.95 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 97.95 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 97.95 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.94 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.94 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 97.93 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 97.93 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 97.93 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.93 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 97.93 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.93 | |
| d1u3ha1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.92 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 97.92 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 97.92 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.91 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 97.88 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 97.88 | |
| d1yqvl1 | 104 | Immunoglobulin light chain kappa variable domain, | 97.87 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 97.87 | |
| d1q9ra1 | 113 | Immunoglobulin light chain kappa variable domain, | 97.86 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 97.86 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 97.85 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 97.83 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 97.83 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 97.83 | |
| d1cd0a_ | 111 | Immunoglobulin light chain lambda variable domain, | 97.82 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 97.82 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 97.82 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 97.82 | |
| d1smoa_ | 113 | TREM-1 (triggering receptor expressed on myeloid c | 97.8 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.8 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.8 | |
| d1dr9a2 | 95 | CD80, second domain {Human (Homo sapiens) [TaxId: | 97.79 | |
| d1ac6a_ | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.79 | |
| d2aq2a1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.79 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 97.79 | |
| d1ogae1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.78 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 97.78 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 97.77 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 97.77 | |
| d1hxma1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.76 | |
| d1kgcd1 | 112 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.76 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 97.75 | |
| d1f3rb2 | 119 | Immunoglobulin light chain kappa variable domain, | 97.75 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 97.74 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 97.74 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.74 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 97.73 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 97.72 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 97.71 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 97.71 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 97.71 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.71 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 97.71 | |
| d1nfde1 | 108 | Immunoglobulin light chain lambda variable domain, | 97.66 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 97.66 | |
| d2ntsp1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.66 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 97.66 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 97.65 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 97.62 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 97.62 | |
| d1lk2b_ | 99 | beta2-microglobulin {Mouse (Mus musculus) [TaxId: | 97.61 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 97.61 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 97.61 | |
| d1ypzf1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.61 | |
| d1muja1 | 100 | Class II MHC alpha chain, C-terminal domain {Mouse | 97.6 | |
| d1kgce1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.59 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 97.59 | |
| d1olla2 | 93 | Ligand binding domain of NK receptor NKp46 {Human | 97.59 | |
| d1hxmb1 | 123 | T-cell antigen receptor {Human (Homo sapiens), del | 97.58 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 97.58 | |
| d1ugna1 | 96 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.58 | |
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 97.56 | |
| d2bnub1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.56 | |
| d3b5ha2 | 80 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 97.55 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 97.55 | |
| d2cdeb1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.54 | |
| d1k5nb_ | 100 | beta2-microglobulin {Human (Homo sapiens) [TaxId: | 97.54 | |
| d1qfoa_ | 118 | N-terminal domain of sialoadhesin {Mouse (Mus musc | 97.54 | |
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 97.53 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 97.53 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 97.53 | |
| d1j8he1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.53 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 97.52 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 97.5 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 97.49 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 97.48 | |
| d1nkra2 | 99 | Killer cell inhibitory receptor {Human (Homo sapie | 97.47 | |
| d1ymmd1 | 96 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.47 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 97.44 | |
| d1fltx_ | 95 | Second domain of the Flt-1 receptor {Human (Homo s | 97.44 | |
| d1u9ka_ | 110 | TREM-1 (triggering receptor expressed on myeloid c | 97.44 | |
| d1de4a1 | 94 | Hemochromatosis protein Hfe, alpha-3 domain {Human | 97.44 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 97.43 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 97.41 | |
| d1hdmb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 97.4 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 97.4 | |
| d1nfdb1 | 113 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.38 | |
| d1iqdb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.38 | |
| d1d5mb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 97.37 | |
| d1kxvc_ | 119 | Camelid IG heavy chain variable domain, VHh {Camel | 97.36 | |
| d3frua1 | 91 | Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor | 97.36 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 97.35 | |
| d1dqta_ | 117 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.34 | |
| d1nkra1 | 96 | Killer cell inhibitory receptor {Human (Homo sapie | 97.32 | |
| d1c5db1 | 117 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.32 | |
| d7fabh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.31 | |
| d1nlbh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.31 | |
| d2ck0h1 | 109 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.31 | |
| d2agjh1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 97.31 | |
| d1fnga1 | 101 | Class II MHC alpha chain, C-terminal domain {Mouse | 97.31 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 97.28 | |
| d2jelh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.28 | |
| d2fbjh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.27 | |
| d1i8lc_ | 118 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.27 | |
| d1f3dh1 | 115 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.27 | |
| d1dn0b1 | 120 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.26 | |
| d1jnhb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.26 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 97.25 | |
| d1fo0b_ | 112 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.25 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 97.24 | |
| d1mjuh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.23 | |
| d1t7va1 | 94 | Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu | 97.22 | |
| d1um5h1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.22 | |
| d1jpth1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 97.22 | |
| d1ugna2 | 98 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.2 | |
| d1indh1 | 114 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.2 | |
| d1pg7x1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.19 | |
| d1rz7h1 | 119 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.17 | |
| d1mfah1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.16 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 97.15 | |
| d1vgeh1 | 122 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.14 | |
| d1zvya1 | 124 | Camelid IG heavy chain variable domain, VHh {Camel | 97.12 | |
| d1eapb1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.12 | |
| d1xaua_ | 104 | B and T lymphocyte attenuator, Btla {Mouse (Mus mu | 97.12 | |
| d1a2yb_ | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.11 | |
| d1jbja2 | 100 | CD3 epsilon chain ectodomain fragment {Mouse (Mus | 97.1 | |
| d1rihh1 | 125 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.1 | |
| d1ct8b1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.1 | |
| d1uvqa1 | 99 | Class II MHC alpha chain, C-terminal domain {Human | 97.09 | |
| d1xiwa_ | 91 | CD3 epsilon chain ectodomain fragment {Human (Homo | 97.09 | |
| d2p49b1 | 121 | Camelid IG heavy chain variable domain, VHh {Camel | 97.08 | |
| d1oari_ | 103 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.07 | |
| d1n0xh1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.07 | |
| d1mqkh_ | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.07 | |
| d1sjva_ | 107 | Camelid IG heavy chain variable domain, VHh {Llama | 97.07 | |
| d1qnzh_ | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.06 | |
| d1ieha_ | 135 | Camelid IG heavy chain variable domain, VHh {Llama | 97.06 | |
| d1j05b_ | 121 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.04 | |
| d2b1hh1 | 124 | Immunoglobulin heavy chain variable domain, VH {En | 97.03 | |
| d1uvqb1 | 97 | Class II MHC beta chain, C-terminal domain {Human | 97.02 | |
| d1lmka1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.02 | |
| d1q0xl2 | 102 | Immunoglobulin light chain lambda constant domain, | 97.01 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 97.01 | |
| d1r0ah1 | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.01 | |
| d1yjdc1 | 118 | CD28 {Human (Homo sapiens) [TaxId: 9606]} | 97.01 | |
| d1o0va1 | 104 | Immunoglobulin heavy chain epsilon constant domain | 97.0 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 97.0 | |
| d1ncwh1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.0 | |
| d1rhhb1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.99 | |
| d2nxyd1 | 128 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.99 | |
| d1dfbh1 | 126 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.98 | |
| d1k5na1 | 95 | Class I MHC, alpha-3 domain {Human (Homo sapiens) | 96.97 | |
| d1ai1h1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.96 | |
| d1bz7b1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.95 | |
| d1dlfh_ | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.94 | |
| d1hnfa1 | 101 | CD2, first domain {Human (Homo sapiens) [TaxId: 96 | 96.93 | |
| d1yedb1 | 124 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.93 | |
| d1ol0a_ | 121 | Immunoglobulin heavy chain variable domain, VH {En | 96.92 | |
| d2mhaa1 | 89 | Class I MHC, alpha-3 domain {Mouse (Mus musculus) | 96.91 | |
| d1i3ua_ | 127 | Camelid IG heavy chain variable domain, VHh {Llama | 96.91 | |
| d2fx7h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.89 | |
| d1lo4h1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.89 | |
| d1rjca1 | 126 | Camelid IG heavy chain variable domain, VHh {Camel | 96.88 | |
| d1rzga1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.88 | |
| d1ad9b1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 96.87 | |
| d1etzb1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.87 | |
| d1tjgh1 | 132 | Immunoglobulin heavy chain variable domain, VH {En | 96.85 | |
| d1op3h1 | 125 | Immunoglobulin heavy chain variable domain, VH {En | 96.83 | |
| d1fp5a2 | 105 | Immunoglobulin heavy chain epsilon constant domain | 96.82 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 96.81 | |
| d1rzfh1 | 133 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.8 | |
| d1rzfl2 | 102 | Immunoglobulin light chain lambda constant domain, | 96.78 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 96.78 | |
| d1q9rb1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.77 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 96.77 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 96.76 | |
| d1hdma1 | 103 | Class II MHC alpha chain, C-terminal domain {Human | 96.74 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 96.72 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 96.69 | |
| d2fb4h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.68 | |
| d3cx5j1 | 127 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.66 | |
| d3c2ah1 | 131 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.62 | |
| d1fn4b1 | 116 | Immunoglobulin heavy chain variable domain, VH {Ra | 96.59 | |
| d1nfdf1 | 121 | Immunoglobulin heavy chain variable domain, VH {Ha | 96.59 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 96.58 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 96.56 | |
| d1b2wh1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 96.48 | |
| d1ogae2 | 127 | T-cell antigen receptor {Human (Homo sapiens), bet | 96.47 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 96.45 | |
| d1ow0a2 | 108 | Immunoglobulin heavy chain alpha constant domain 3 | 96.41 | |
| d1nfde2 | 104 | Immunoglobulin light chain lambda constant domain, | 96.32 | |
| d1mjul2 | 107 | Immunoglobulin light chain kappa constant domain, | 96.32 | |
| d1hyrc1 | 94 | Class I MHC homolog, alpha-3 domain {Human (Homo s | 96.31 | |
| d2h26a1 | 96 | CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T | 96.27 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 96.25 | |
| d1c5cl2 | 107 | Immunoglobulin light chain kappa constant domain, | 96.17 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 96.09 | |
| d1dn0b2 | 105 | Immunoglobulin heavy chain mu constant domain 1, C | 96.08 | |
| d1mjuh2 | 102 | Immunoglobulin heavy chain gamma constant domain 1 | 95.91 | |
| d1igtb4 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 95.9 | |
| d1i1ca2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 95.88 | |
| d1cqka_ | 101 | Immunoglobulin heavy chain gamma constant domain 3 | 95.86 | |
| d1jbja1 | 86 | CD3 gamma chain ectodomain fragment {Mouse (Mus mu | 95.81 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 95.81 | |
| d1l6xa2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 95.78 | |
| d1kcvh2 | 101 | Immunoglobulin heavy chain gamma constant domain 1 | 95.7 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 95.67 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 95.67 | |
| d1sy6a1 | 81 | CD3 gamma chain ectodomain fragment {Human (Homo s | 95.65 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 95.43 | |
| d1hxma2 | 86 | T-cell antigen receptor {Human (Homo sapiens), gam | 95.4 | |
| d2fbjh2 | 102 | Immunoglobulin heavy chain alpha constant domain 1 | 95.38 | |
| d3d85d1 | 87 | The p40 domain of interleukin-12 (IL-12 beta chain | 95.36 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 95.25 | |
| d1qfoa_ | 118 | N-terminal domain of sialoadhesin {Mouse (Mus musc | 95.19 | |
| d1u58a1 | 98 | Immunomodulatory protein m144, alpha-3 domain {Mur | 95.13 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 95.04 | |
| d1i1ca1 | 103 | Immunoglobulin heavy chain gamma constant domain 2 | 95.04 | |
| d1hxmb2 | 107 | T-cell antigen receptor {Human (Homo sapiens), del | 94.92 | |
| d1hnfa1 | 101 | CD2, first domain {Human (Homo sapiens) [TaxId: 96 | 94.75 | |
| d1fp5a1 | 103 | Immunoglobulin heavy chain epsilon constant domain | 94.72 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 94.63 | |
| d1c5ch2 | 103 | Immunoglobulin heavy chain gamma constant domain 1 | 94.33 | |
| d1xiwb_ | 74 | CD3 delta chain ectodomain fragment {Human (Homo s | 94.29 | |
| d1xaua_ | 104 | B and T lymphocyte attenuator, Btla {Mouse (Mus mu | 94.19 | |
| d1igtb3 | 119 | Immunoglobulin heavy chain gamma constant domain 2 | 93.94 | |
| d1l6xa1 | 105 | Immunoglobulin heavy chain gamma constant domain 2 | 93.35 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 93.12 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 92.95 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 92.43 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 92.36 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 92.28 | |
| d1smoa_ | 113 | TREM-1 (triggering receptor expressed on myeloid c | 92.08 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 92.07 | |
| d1i1ra1 | 100 | Cytokine receptor gp130 cytokine-binding domains { | 91.96 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 91.87 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 91.65 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 91.6 | |
| d1pfca_ | 111 | Immunoglobulin heavy chain gamma constant domain 3 | 91.6 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 91.36 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 90.98 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 90.89 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 90.89 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 90.84 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 90.78 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 90.66 | |
| d1ow0a1 | 101 | Immunoglobulin heavy chain alpha constant domain 2 | 90.63 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 90.62 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 90.48 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 90.39 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 90.3 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 90.27 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 90.25 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 90.15 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 90.14 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 90.14 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 90.14 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 90.01 | |
| d1ymmd1 | 96 | T-cell antigen receptor {Human (Homo sapiens), alp | 89.98 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 89.95 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 89.83 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 89.82 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 89.67 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 89.63 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 89.62 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 89.56 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 89.55 | |
| d1u9ka_ | 110 | TREM-1 (triggering receptor expressed on myeloid c | 89.46 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 89.45 | |
| d1u3ha1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 89.2 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 89.06 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 88.98 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 88.89 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 88.75 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 88.66 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 88.57 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 88.49 | |
| d1kgce1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 88.45 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 88.45 | |
| d1ugna1 | 96 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 88.3 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 88.26 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 88.21 | |
| d1nfde1 | 108 | Immunoglobulin light chain lambda variable domain, | 87.99 | |
| d1q9ra1 | 113 | Immunoglobulin light chain kappa variable domain, | 87.99 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 87.92 | |
| d1ogae1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 87.72 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 87.58 | |
| d1yqvl1 | 104 | Immunoglobulin light chain kappa variable domain, | 87.43 | |
| d2aq2a1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), bet | 87.26 | |
| d1yjdc1 | 118 | CD28 {Human (Homo sapiens) [TaxId: 9606]} | 87.25 | |
| d1ac6a_ | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 86.95 | |
| d1dqta_ | 117 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 86.44 | |
| d2ntsp1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 86.43 | |
| d1cd0a_ | 111 | Immunoglobulin light chain lambda variable domain, | 86.39 | |
| d2cdeb1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 86.05 | |
| d1nfdb1 | 113 | T-cell antigen receptor {Mouse (Mus musculus), bet | 85.92 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 85.24 | |
| d1j8he1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 85.22 | |
| d1i8lc_ | 118 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 85.18 | |
| d1hxmb1 | 123 | T-cell antigen receptor {Human (Homo sapiens), del | 85.03 | |
| d1xmwa2 | 66 | CD3 epsilon chain ectodomain fragment {Sheep (Ovis | 84.95 | |
| d1f3rb2 | 119 | Immunoglobulin light chain kappa variable domain, | 84.93 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 84.44 | |
| d2bnub1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 84.22 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 83.82 | |
| d1ypzf1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 82.26 | |
| d1nkra1 | 96 | Killer cell inhibitory receptor {Human (Homo sapie | 82.06 | |
| d1fltx_ | 95 | Second domain of the Flt-1 receptor {Human (Homo s | 81.99 | |
| d1kgcd1 | 112 | T-cell antigen receptor {Human (Homo sapiens), alp | 81.76 | |
| d1igyb3 | 116 | Immunoglobulin heavy chain gamma constant domain 2 | 81.31 | |
| d1ugna2 | 98 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 81.01 | |
| d2oz4a1 | 84 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 80.38 | |
| d1olla2 | 93 | Ligand binding domain of NK receptor NKp46 {Human | 80.02 |
| >d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Fumarase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.1e-59 Score=470.83 Aligned_cols=314 Identities=52% Similarity=0.777 Sum_probs=278.4
Q ss_pred ceeeecccceeEEEEeccCC-------CCCCCcccccchhhhhhhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRA-------GQLPSYGPHIKRAVEAEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~-------g~~~~~~~w~~~~l~~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|.+.+++|+..++... ..+.+.+.-+.+.+.....+ .+++|.||||+|+|+|+|+||++++ |++.|.
T Consensus 130 ~d~v~~gqSsnD~~~Ta~~l~~~~~~~~~L~~~L~~L~~~L~~kA~e~~~~im~GRTHlQ~A~PiT~G~~~~~-~~~~l~ 208 (459)
T d1yfma_ 130 NNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSG-YVQQVE 208 (459)
T ss_dssp CCCCTTTCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHHH
T ss_pred chhhhhccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeehhHhhCCcCCCeeHHHHHHH-HHHHHH
Confidence 34566777777766655321 11122333333333333444 8899999999999999999999999 999999
Q ss_pred chHHHHHhHhhhhhh---hcC-CC----CChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHH
Q psy10160 313 PNDRQALNIVSIFYF---TYL-VK----LSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLM 384 (558)
Q Consensus 313 ~~~~~l~~~~~~~~~---~g~-~g----~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~ 384 (558)
|+++||++++.++.. +|+ +| +..+++..+.+.+++.|||.+.+.+|++|++++||+++|++++|++++++|+
T Consensus 209 r~~~RL~~~~~~l~~~~lGgta~gtg~~a~~~~~~~v~~~l~~~lgl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~ 288 (459)
T d1yfma_ 209 NGIQRVAHSLKTLSFLAQGGTAVGTGLNTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLF 288 (459)
T ss_dssp HHHHHHHHHHHHHTEECTTCTTTSSCTTSCTTHHHHHHHHHHHHHSSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhcccchhhccccCCCcchHHHHHHHHHHcCCCCcccCchHHHHcCChhHHHHHHHHHHHHHHHH
Confidence 999999887766655 443 33 4456677788999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHH
Q psy10160 385 KIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNV 464 (558)
Q Consensus 385 k~a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (558)
|||+||++|+|||+.||+|+.+|+.++|||||||||||+.+|.+++.|++++|+.+++....+.+++|+|.+.|.++|.+
T Consensus 289 Kia~Dlrll~s~~~~g~~El~~~~~~~GSSiMP~K~NPv~~E~v~~~~~~v~G~~~~i~~~~~~~~~e~n~~~~~~~~~~ 368 (459)
T d1yfma_ 289 KIAQDIRYLGSGPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFKPVMIANL 368 (459)
T ss_dssp HHHHHHHHHTCCSSSSCCCEECCCCSCCCTTSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCSCHHHHHHHH
T ss_pred HHHHHHHHhccceeeeEEeeecccccccCcccccccChhhHHHHHHHHHHhccHhhHHHHHHhcCcccccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHH
Q psy10160 465 LRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEEE 544 (558)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~~ 544 (558)
++++.++.+++..++.+|+++|+||++||+++++++++++|+|++.+||+.||++|++|.++|++++|++.+.+.|+++|
T Consensus 369 l~s~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~taL~~~iGy~~A~~ia~~a~~~g~~lre~~~~~~~Ls~~e 448 (459)
T d1yfma_ 369 LNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAASKVAKNAHKKGITLKESALELGVLTEKE 448 (459)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSGGGTTTGGGTCHHHHHHHHHHHHHHTCCHHHHHHHTTSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCEECHHHHHHHHHhCccHHHHhcchhhHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCccccc
Q psy10160 545 FNKWVVPEDML 555 (558)
Q Consensus 545 ~~~~~~p~~~~ 555 (558)
|++++||++|+
T Consensus 449 ld~lldP~~~l 459 (459)
T d1yfma_ 449 FDEWVVPEHML 459 (459)
T ss_dssp HHHHCCGGGCC
T ss_pred HHHHcCHHHhC
Confidence 99999999986
|
| >d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Fumarase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.9e-58 Score=467.08 Aligned_cols=316 Identities=43% Similarity=0.588 Sum_probs=280.8
Q ss_pred ceeeecccceeEEEEeccCCCCC--------CCcccccchhhhhhhhh-hhhhhcccccchhhhhhhHHHhhcccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQL--------PSYGPHIKRAVEAEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNL 311 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~--------~~~~~w~~~~l~~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l 311 (558)
+.++|+|.+++|+..++.. ... .+.+.-+.+.+.....+ ++++|.||||+|+|+|+|||+++++ |+++|
T Consensus 128 ~~~vh~g~SsnD~~~Ta~~-l~~~~~l~~~l~~~L~~L~~~L~~~A~~~~~t~m~GRTHlQ~A~PiT~G~~~a~-~~~~l 205 (460)
T d1vdka_ 128 NDHVNRGQSSNDTFPTAMY-VAVALALHQRLYPAVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGS-WAAQL 205 (460)
T ss_dssp CCCCTTTCCHHHHHHHHHH-HHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHH
T ss_pred hhHHHhcccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCeeehhhhhcccccCccHHHHHHH-HHHHH
Confidence 5678899999988887753 111 22223333333333444 8999999999999999999999998 99999
Q ss_pred cchHHHHHhHhhhh---hhhc-CCCCCh----hHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHH
Q psy10160 312 DPNDRQALNIVSIF---YFTY-LVKLSE----LLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSL 383 (558)
Q Consensus 312 ~~~~~~l~~~~~~~---~~~g-~~g~~~----~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l 383 (558)
.|+++||+++..++ +++| ++|+.. .|+..+++++++.|||++....|+++++++||+++|++++|+.++++|
T Consensus 206 ~r~~~RL~~~~~~l~~~~lGGaAvGt~~~~~~~~~~~~~~~la~~lGl~~~~~~n~~~~~~~rD~~~e~~~~l~~la~~L 285 (460)
T d1vdka_ 206 KTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHPRFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGAL 285 (460)
T ss_dssp HHHHHHHHHHHGGGGEECTTCTTTSSCTTSCTTHHHHHHHHHHHHHSSCCEECSCTTHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhcCCCccccccccccchhHHHHHHHHHHHhCcCccccCCchhheecchhHHHHHHHHHHHHHHH
Confidence 99999998777665 4455 355543 355678899999999998899999999999999999999999999999
Q ss_pred HHHhhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHH
Q psy10160 384 MKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSN 463 (558)
Q Consensus 384 ~k~a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (558)
+|||+||++|+|+|+.|++|+.+|++++|||||||||||+.+|++++++++++|+..++......+++|+|.+.|.++|.
T Consensus 286 ~Kia~Dir~l~s~e~~~i~E~~~~~~q~GSSiMP~K~NPv~~E~v~~~~~~v~g~~~~i~~~~~~~~~e~n~~~~~~~~~ 365 (460)
T d1vdka_ 286 MKIGNDVRWLASGPYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKPVMAYS 365 (460)
T ss_dssp HHHHHHHHHHTCBSSSSCCSEECCCCSCCSSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCBTTBCSCHHHHHHH
T ss_pred HHHHHHHHHhhcchhceehhhhcccccCCCccccccCCCcHHHHHhhhhHHHHHHHHHHHHHHcCCCccccccchHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHH
Q psy10160 464 VLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEE 543 (558)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~ 543 (558)
+++++..+.+++..++..|+++|+||++||+++++.+++++|+|++.+||++||++|++|.++|++++|++.+.++|+++
T Consensus 366 ~l~~~~~l~~~~~~~~~~~~~gl~vn~~rm~~~l~~s~~l~taLa~~ig~~~A~eiv~~A~~~~~~l~e~~~~~~~ls~e 445 (460)
T d1vdka_ 366 TLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNKAIGYDKAAEIVKKALKEKKTLKQAALELGYLTEE 445 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTCGGGGHHHHHHHCSHHHHTTTTTSCC--CCHHHHHHHTSSSCHH
T ss_pred hhhHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcChhHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCcccccCCC
Q psy10160 544 EFNKWVVPEDMLGPK 558 (558)
Q Consensus 544 ~~~~~~~p~~~~~~~ 558 (558)
||+++|||++|++|.
T Consensus 446 eld~~ldP~~~~~p~ 460 (460)
T d1vdka_ 446 EFDRIVVPMRLAKPH 460 (460)
T ss_dssp HHHHHCCHHHHHCCC
T ss_pred HHHHhCCHHHhCCCC
Confidence 999999999999973
|
| >d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Fumarase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-56 Score=456.18 Aligned_cols=273 Identities=56% Similarity=0.857 Sum_probs=255.6
Q ss_pred hhhhhcccccchhhhhhhHHHhhcccccccccchHHHHHhHhhhhhh---hcC-CCCChh----HHHHHHHHHHhHhCCC
Q psy10160 281 ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLDPNDRQALNIVSIFYF---TYL-VKLSEL----LETKCAAKIAELTGLP 352 (558)
Q Consensus 281 ~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~~~~~~l~~~~~~~~~---~g~-~g~~~~----~~~~~~~~~a~~lg~~ 352 (558)
.+++|.||||+|+|+|+||||++++ |++.|.|+++||+++..+++. +|+ +|+... +.......++..+|++
T Consensus 176 ~~tvm~GrTHlQ~A~PiTfG~~~~~-~~~~l~R~~~RL~~~~~r~~~~~lGGaa~Gt~~~~~~~~~~~~~~~l~~~~~~~ 254 (456)
T d1fuoa_ 176 ADIVKIGRTHLQDATPLTLGQEISG-WVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAP 254 (456)
T ss_dssp TTCEECCEETTEECCCEEHHHHHHH-HHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSCTTHHHHHHHHHHHHHTSC
T ss_pred cCceeccHHhcCCCCCEehHHHHHH-HHHHHHHhHHHHHHHHHHHHHhCCCCCcccCccccChHHHHHHHHHhhhcccCC
Confidence 8899999999999999999999998 999999999999988766654 443 555432 3345678899999999
Q ss_pred cccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHH
Q psy10160 353 FKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVA 432 (558)
Q Consensus 353 ~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~ 432 (558)
+.+..|++||+++||+++|++++|++++++|+|||+||++|+|+|+.||+|+.+|++++|||||||||||+.+|.++++|
T Consensus 255 ~~~~~n~~~~~~~rD~~~e~~~~la~la~~L~kia~Di~ll~s~~~~e~~e~~~~~~~~GSSiMP~K~NP~~~E~i~~~a 334 (456)
T d1fuoa_ 255 FVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLC 334 (456)
T ss_dssp CEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCCCTTCTTCCCCHHHHHHHHHH
T ss_pred ceeccCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhhhccccccccchhcccccCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred HHHHcccHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccC
Q psy10160 433 AQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIG 512 (558)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~ 512 (558)
+++.|++.++......+++++|...|.++|.+++++..+.+++..++..|+++|+||+++|+++++++++++|+|++.+|
T Consensus 335 ~~v~g~~~~i~~~~~~~~~e~n~~~~~~~~~~l~~~~~l~~~~~~~~~~~i~~l~vn~e~m~~~l~~s~~l~taLa~~iG 414 (456)
T d1fuoa_ 335 CQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIG 414 (456)
T ss_dssp HHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTCSTTHHHHHTTSC
T ss_pred HHhcchhhHHHHHHhcCchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhchhHHHHhccccc
Confidence 99999999988888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhhcCcccc
Q psy10160 513 YDKAAKIAKTAHKEGTTLKVAALKLGYLTEEEFNKWVVPEDM 554 (558)
Q Consensus 513 ~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~ 554 (558)
|++||++|++|.++|++++|++.+.+.|+++||+++|||+++
T Consensus 415 ~~~A~eia~~a~~~g~~lre~~~~~~~ls~eeld~~ldP~~m 456 (456)
T d1fuoa_ 415 YDKAAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQM 456 (456)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHTTSSCHHHHHHHCCGGGC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHhCChhhC
Confidence 999999999999999999999999999999999999999875
|
| >d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: L-aspartate ammonia lyase species: Bacillus sp., ym55-1 [TaxId: 1409]
Probab=100.00 E-value=4e-57 Score=461.15 Aligned_cols=316 Identities=33% Similarity=0.515 Sum_probs=281.3
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
..++|+|.+.+|+..++.. ...+.....+...+.. ...+ ++++|.||||+|+|+|+||||++++ |++.|.
T Consensus 128 ~~~vH~G~SsnDi~~Ta~~-L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~tvm~GRTHlQ~A~PiTfG~~~~~-~~~~l~ 205 (462)
T d1j3ua_ 128 NSHVNMSQSTNDAFPTATH-IAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEA-YARVIA 205 (462)
T ss_dssp CCCCTTTCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHHH
T ss_pred chhhhhccchhhHHHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHHHhhccccchhHHhCccccceeHHHHHHH-HHHHHH
Confidence 4578999999999998876 4444444444443333 2233 8899999999999999999999998 999999
Q ss_pred chHHHHHhHhhhhh---hhcCCC-CCh----hHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHH
Q psy10160 313 PNDRQALNIVSIFY---FTYLVK-LSE----LLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLM 384 (558)
Q Consensus 313 ~~~~~l~~~~~~~~---~~g~~g-~~~----~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~ 384 (558)
|+++||+++..+++ ++|+++ +.. +|.......+++.+|+......|+++|+++||+++|++++|++++++|+
T Consensus 206 r~~~RL~~~~~~l~~~~lGg~a~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rD~~~e~~~~L~~la~~L~ 285 (462)
T d1j3ua_ 206 RDIERIANTRNNLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMS 285 (462)
T ss_dssp HHHHHHHHTTGGGSEECTTCTTTSSCTTCCHHHHHHHHHHHHHHHCSCCEECSSHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhHhHhhhhccccccccchHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999988776654 444333 222 2334567788999999988999999999999999999999999999999
Q ss_pred HHhhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHH
Q psy10160 385 KIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNV 464 (558)
Q Consensus 385 k~a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (558)
|||+||++|+|+|+.|++|+.+|+.++|||||||||||+.+|.++++|+++.|++.+++.....++++++.+.+.+.+.+
T Consensus 286 Kia~Di~ll~s~e~~~i~E~~~~~~~~GSSiMP~KrNP~~~E~v~~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~ 365 (462)
T d1j3ua_ 286 KIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNL 365 (462)
T ss_dssp HHHHHHHHHTCCSTTSCCCEECCCCSCCCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHH
T ss_pred HHHHHHHHHhCCcccceeeecccccccchhhhccccCChhHhhhhhhHhcccCccchhhhhhhccchhhcccchhhhhhh
Confidence 99999999999888888888888889999999999999999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHH
Q psy10160 465 LRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEEE 544 (558)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~~ 544 (558)
++++..+.+++..++..|+++|+||++||++|++.+.+++|+|++++||+.||+++++|.++|++++|++.+.+.|++++
T Consensus 366 ~~~~~~l~~~~~~~~~~~l~gl~vn~erm~~~l~~s~~l~taLa~~ig~~~A~~i~~~A~~~g~~l~e~~~~~~~Ls~ee 445 (462)
T d1j3ua_ 366 IQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQ 445 (462)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGCEECHHHHHHHHHTCTTGGGGTGGGSHHHHHHHHHHTTTTSCCCHHHHHHTTCSSCHHH
T ss_pred hhHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCccHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCcccccCCC
Q psy10160 545 FNKWVVPEDMLGPK 558 (558)
Q Consensus 545 ~~~~~~p~~~~~~~ 558 (558)
|+++|||++|++++
T Consensus 446 ld~lldP~~~~~pg 459 (462)
T d1j3ua_ 446 LNEILNPYEMIHPG 459 (462)
T ss_dssp HHHHSCTTGGGSBC
T ss_pred HHHhcCHHHhcCCC
Confidence 99999999999763
|
| >d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: L-aspartate ammonia lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-56 Score=454.14 Aligned_cols=309 Identities=29% Similarity=0.440 Sum_probs=277.2
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
..++|+|.+++|+..++.. .........+...+.. ...+ .+++|.||||+|+|+|+||||++++ |++.|.
T Consensus 135 ~~~Vh~G~SsnDi~~Ta~~-L~~~~~l~~L~~~L~~L~~~L~~~A~~~~~tvm~GRTHlQ~A~PiTfG~~~~~-~~~~l~ 212 (459)
T d1jswa_ 135 NDHVNKCQSTNDAYPTGFR-IAVYSSLIKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRA-FSILLK 212 (459)
T ss_dssp CCCCSCSCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCEEECCGGGSCCCEEEHHHHHHH-HHHHHH
T ss_pred hhhhhccCchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeeecHhhcccCcCcchHHHHHH-HHHHHH
Confidence 5678999999999888865 3444444333333332 3333 8899999999999999999999998 999999
Q ss_pred chHHHHHhHhhhhhh---hcC-CCC----ChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHH
Q psy10160 313 PNDRQALNIVSIFYF---TYL-VKL----SELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLM 384 (558)
Q Consensus 313 ~~~~~l~~~~~~~~~---~g~-~g~----~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~ 384 (558)
|+++||+.+..+++. +|+ +|+ ..+|.+.++..+++.+|+......|.++|+++||+++|++++|++++++|+
T Consensus 213 r~~~rl~~~~~~l~~~~lGg~A~gt~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~rD~~~e~~~~L~~la~~L~ 292 (459)
T d1jswa_ 213 EEVKNIQRTAELLLEVNLGATAIGTGLNTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMS 292 (459)
T ss_dssp HHHHHHHHHHHHTTEECCSCCSSSSCSSCTTTHHHHHHHHHHHHHCCCCEECSCSSSBTTBCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHhccccccccchhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 999999887765544 442 232 235566788999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHH
Q psy10160 385 KIANDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNV 464 (558)
Q Consensus 385 k~a~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (558)
|||+||++|+|||+.|++|+.+|+.++|||||||||||+.+|.++++|.+++|+..+++.....+++++|.+.+.+.+.+
T Consensus 293 Kia~Dlrll~s~e~~~l~E~~lp~~q~GSSiMP~K~NPv~~E~v~~~~~~v~g~~~~i~~~~~~~~~e~n~~~~~~~~~l 372 (459)
T d1jswa_ 293 KICNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAM 372 (459)
T ss_dssp HHHHHHHHHHCSTTTSCCCEECCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHH
T ss_pred HHHHHHHHHhCCCeecceeccchhhccccHHHHHHHhhhhHhhHHHhhccccccccchhhhhhccCccchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccccChHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHH
Q psy10160 465 LRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPHIGYDKAAKIAKTAHKEGTTLKVAALKLGYLTEEE 544 (558)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~l~~~~a~~~~~~a~~~~~~~~~~~~~~~~l~~~~ 544 (558)
++++.++.++++.++.+|+++|+||+|||+++++.+.+++|+|++.+||+.|+++++.|.++|++++|++.+.+.|+++|
T Consensus 373 l~s~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~LataL~p~iG~~~a~~iak~A~~~g~~l~e~~le~~~ls~~e 452 (459)
T d1jswa_ 373 FESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEAE 452 (459)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTCTTCGGGTHHHHCHHHHHHHHHHHHTTCCCHHHHHHHHTSSCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhhHHHHHHhcchhhhHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCc
Q psy10160 545 FNKWVVP 551 (558)
Q Consensus 545 ~~~~~~p 551 (558)
|+++||.
T Consensus 453 ld~ildv 459 (459)
T d1jswa_ 453 LDDIFSV 459 (459)
T ss_dssp HHTSCCC
T ss_pred HHHhhCC
Confidence 9999983
|
| >d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) species: Pseudomonas putida, strain KT2440 [TaxId: 303]
Probab=100.00 E-value=1.2e-50 Score=415.49 Aligned_cols=307 Identities=23% Similarity=0.195 Sum_probs=251.8
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhh-------hhhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVE-------AEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~-------~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|+|.+++|+..++.. ...+.....+...+. ..... .+++|.||||+|+|+|+|+||++++ |++.|.
T Consensus 95 ~~~vH~G~TsnDi~~Ta~~-L~lr~~~~~l~~~l~~l~~~L~~~a~~~~~~~m~grTH~Q~A~P~T~G~~~~~-~~~~l~ 172 (448)
T d1re5a_ 95 ERYVHLGATSQDAMDTGLV-LQLRDALDLIEADLGKLADTLSQQALKHADTPLVGRTWLQHATPVTLGMKLAG-VLGALT 172 (448)
T ss_dssp GGGTTTTCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHHH
T ss_pred HhHccCCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhHHHHHHHH-HHhhhh
Confidence 5679999999999988765 344444333333222 22233 8899999999999999999999998 999999
Q ss_pred chHHHHHhHhhhh---hhhcCCCCChhHH---HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHH
Q psy10160 313 PNDRQALNIVSIF---YFTYLVKLSELLE---TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKI 386 (558)
Q Consensus 313 ~~~~~l~~~~~~~---~~~g~~g~~~~~~---~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~ 386 (558)
|+++||.+++.++ +++|++|+.++++ ..+++.+++.|||..+..+ ++++||++++++++|++++++++||
T Consensus 173 r~~~rL~~~~~~~~~~~lgga~g~~~~~~~~~~~~~~~l~~~lgl~~~~~~----~~~~rd~~~e~~~~l~~~~~~l~ki 248 (448)
T d1re5a_ 173 RHRQRLQELRPRLLVLQFGGASGSLAALGSKAMPVAEALAEQLKLTLPEQP----WHTQRDRLVEFASVLGLVAGSLGKF 248 (448)
T ss_dssp HHHHHHHHHHHHHSBCCCCCTTSSCGGGGGGHHHHHHHHHHHHTCBCCSSC----CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhcccCcCccchhcccchhHHHHHHHHHHhCCCCCCCc----chHhhhHHHHHHHHHHHHHhhHHHH
Confidence 9999999877654 5677888888876 3678999999999865555 4899999999999999999999999
Q ss_pred hhhhhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHH
Q psy10160 387 ANDIRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNV 464 (558)
Q Consensus 387 a~d~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (558)
|+|+++|++ +|+||+.+|+ +++|||||||||||+.+|+++++++++.|++..++..+ .++++++...+...|..
T Consensus 249 a~di~~l~~---~~~~~~~e~~~~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~-~~~~erd~~~~~~~~~~ 324 (448)
T d1re5a_ 249 GRDISLLMQ---TEAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLSTLFAAM-PQEHERSLGLWHAEWET 324 (448)
T ss_dssp HHHHHHHTS---TTTCCEECCCCC----------CCCCHHHHHHHHHHHHHHHHHHHHHHTC-CCCTTBCSSTTTTHHHH
T ss_pred HHHHHHhhh---hhhhhhhccccccCCccchhhhccCcchHHHHHHHHHHHHHHHHHHhhhc-chhhHhhhhhhhhhhhh
Confidence 999999996 8889998875 47899999999999999999999999999998886544 56799999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhh------hhcccccChHHHHHHH----HHHHHcCCCHHHHH
Q psy10160 465 LRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLV------TALNPHIGYDKAAKIA----KTAHKEGTTLKVAA 534 (558)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~------~~la~~l~~~~a~~~~----~~a~~~~~~~~~~~ 534 (558)
++++..+..+++.++..++++|+||++||+++++.+..++ +.|++.+||++||+++ +.|..+|++++|++
T Consensus 325 ~~~~~~~~~~~~~~~~~~l~~l~vn~~~m~~~l~~s~~~~~ae~~~~~L~~~ig~~~Ah~iv~~~~~~a~~~~~~l~~~~ 404 (448)
T d1re5a_ 325 LPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSIVLAQRLGRDRAHHLLEQCCQRAVAEQRHLRAVL 404 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTSTTGGGHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hhhhhHHHHHHHHhhhcccccCcccHHHHHHHHHhccCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999999999999999999997554332 2377889999999875 56778999999998
Q ss_pred HHc----CCCCHHHHhhhcCcccccCC
Q psy10160 535 LKL----GYLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 535 ~~~----~~l~~~~~~~~~~p~~~~~~ 557 (558)
.+. ..|++++++++|||++|+|.
T Consensus 405 ~~~~~~~~~l~~~~l~~~ldP~~~iG~ 431 (448)
T d1re5a_ 405 GDEPQVSAELSGEELDRLLDPAHYLGQ 431 (448)
T ss_dssp HTCHHHHHHSCHHHHHHHTCGGGCCTT
T ss_pred HhhHhhhCCCCHHHHHHhCCHHHhCCc
Confidence 864 56999999999999999996
|
| >d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=100.00 E-value=4e-50 Score=411.47 Aligned_cols=307 Identities=20% Similarity=0.182 Sum_probs=249.2
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|+|.+++|+..++.. ...+..+.-+...+.. ...+ .+++|.||||+|+|+|+|+||++++ |++.|.
T Consensus 96 ~~~vh~g~ts~Di~~ta~~-l~~~~~~~~l~~~l~~l~~~l~~~a~~~~~~~m~grTH~Q~A~P~T~G~~~~~-~~~~l~ 173 (444)
T d1q5na_ 96 ARYVHWGATSQDILDTACI-LQCRDALAIVQNQVQQCYETALSQAQTYRHQVMMGRTWLQQALPITLGHKLAR-WASAFK 173 (444)
T ss_dssp GGGTTTTCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHHH
T ss_pred HHHhcCCCCchhHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHhhccCCcHHHHHHHH-HHHHHH
Confidence 5688999999998887755 3344333333332222 2223 8899999999999999999999998 999999
Q ss_pred chHHHHHhHhhh---hhhhcCCCCChhHH---HHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHH
Q psy10160 313 PNDRQALNIVSI---FYFTYLVKLSELLE---TKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKI 386 (558)
Q Consensus 313 ~~~~~l~~~~~~---~~~~g~~g~~~~~~---~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~ 386 (558)
|+++||.+.+.+ ..++|++|++++++ +.+.+.+++.||+...... ++++||+++|++++|++++++|+||
T Consensus 174 r~~~rL~~~~~~~~~~~lgga~g~~~~~~~~~~~~~~~l~~~l~l~~~~~~----~~~~rd~~~e~~~~l~~~~~~L~ki 249 (444)
T d1q5na_ 174 RDLDRINAIKARVLVAQLGGAVGSLASLQDQGSIVVEAYAKQLKLGQTACT----WHGERDRIVEIASVLGIITGNVGKM 249 (444)
T ss_dssp HHHHHHHHHHHHHSBCCCCCTTSSCGGGTTCHHHHHHHHHHHHTCBCCSSC----CSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccchhHHHHHHhhhcccccccccc----hhhhhHHHHHHHHHHhhhhhHHHHH
Confidence 999999877654 45567899998886 3678899999999755544 5899999999999999999999999
Q ss_pred hhhhhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHH
Q psy10160 387 ANDIRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNV 464 (558)
Q Consensus 387 a~d~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (558)
|+||++|++ +|+||+.+|. +++|||||||||||+.+|.+++.++++.|++..+... ..++++++...|...+..
T Consensus 250 a~Dl~l~~~---~e~~~~~e~~~~~~~GSSiMP~K~NP~~~E~i~~~a~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 325 (444)
T d1q5na_ 250 ARDWSLMMQ---TEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAAANRVPALMSSIYQS-MVQEHERSLGAWHAEWLS 325 (444)
T ss_dssp HHHHHHHTS---TTTCCEECCC-------------CCCHHHHHHHHHHHHHHHHHHHHHHT-TCCCTTSCSSHHHHHHHH
T ss_pred HHHHHHhcc---ccccccccccccccccchhhhhccCchhHHHHHHHHHhHHHHHHHHHHH-hhcchhhcchhhhHHhhh
Confidence 999999996 8899999885 4789999999999999999999999999998887654 456789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHh------hhhhcccccChHHHHHH----HHHHHHcCCCHHHHH
Q psy10160 465 LRSIRLIADSATAFTDKCVSGIVANEENIHRLLHESLM------LVTALNPHIGYDKAAKI----AKTAHKEGTTLKVAA 534 (558)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~------~~~~la~~l~~~~a~~~----~~~a~~~~~~~~~~~ 534 (558)
++++..+...++..+..++++|+||+++|+++++.+.. +++.|++.+||++||++ ++.|.++|++++|++
T Consensus 326 l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~nle~s~~~i~se~~~~~L~~~ig~~~Ah~iV~~~~~~a~~~~~~l~el~ 405 (444)
T d1q5na_ 326 LPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECTHGLIMAEAVMMALAPHMGRLNAHHVVEAACKTAVAEQKHLKDII 405 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHTTTTGGGHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred hcccchhhhhHHHHHHhHHHHhcchhhHHHHHHHhccChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999975433 23788899999999987 456778999999998
Q ss_pred HHc----CCCCHHHHhhhcCcccccCC
Q psy10160 535 LKL----GYLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 535 ~~~----~~l~~~~~~~~~~p~~~~~~ 557 (558)
.+. ..|++++++++|||++|+|.
T Consensus 406 ~~~~~~~~~L~~~el~~ildP~~yiG~ 432 (444)
T d1q5na_ 406 SQVDEVKQYFNPSQLDEIFKPESYLGN 432 (444)
T ss_dssp TTCHHHHTTCCHHHHHHHTCGGGGCTT
T ss_pred HhhhHhhcCCCHHHHHHhcCHHHHcCc
Confidence 763 67999999999999999986
|
| >d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Adenylosuccinate lyase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.2e-50 Score=406.96 Aligned_cols=308 Identities=16% Similarity=0.117 Sum_probs=253.1
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhh-------hhhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVE-------AEAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~-------~~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|+|.+++|+.+++.. ...+.....+...+. ..... ++++|.||||+|+|+|+|+||++++ |++.|.
T Consensus 84 ~~~vH~G~Ts~Di~~ta~~-l~~~~~~~~l~~~l~~l~~~l~~~a~~~~~t~m~grTh~Q~A~P~T~G~~~~~-~~~~l~ 161 (429)
T d1c3ca_ 84 SRFFHYGLTSSDVLDTANS-LALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLG-WYSEMK 161 (429)
T ss_dssp GGGTTTTCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHHH
T ss_pred hccccCCCChHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHhccCeeecchHhhcccCCchhHHHHHH-HHHHHH
Confidence 5689999999999888865 333333333333222 22233 8899999999999999999999998 999999
Q ss_pred chHHHHHhHhhhhhhh---cCCCCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhhh
Q psy10160 313 PNDRQALNIVSIFYFT---YLVKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAND 389 (558)
Q Consensus 313 ~~~~~l~~~~~~~~~~---g~~g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~d 389 (558)
|+++||...+.+++.+ |++|++..+++...+..+..+|+...+.. +|+++||++++++++|+.++++|+|||+|
T Consensus 162 r~~~rl~~~~~~~~~~~~gga~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~rd~~~e~~~~l~~~~~~L~kia~D 238 (429)
T d1c3ca_ 162 RNVQRLERAIEEVSYGKISGAVGNYANVPPEVEEKALSYLGLKPEPVS---TQVVPRDRHAFYLSTLAIVAAGIERIAVE 238 (429)
T ss_dssp HHHHHHHHHHHHTCEECCCCTTSSCSSSCHHHHHHHHHHTTCEECSSC---SSSCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhcccccccccccccchhHHHHHHHhhcCCccccc---hHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887766654 56777777776666677777777643333 47999999999999999999999999999
Q ss_pred hhhhccCCCccccceecCC--CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHH
Q psy10160 390 IRFLASGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRS 467 (558)
Q Consensus 390 ~~~~~s~~~~e~~e~~~~~--~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (558)
|++|++ +||||+.+|+ +++|||||||||||+.+|+++++++.+.|++.+++. ....++++|...|..+|..+++
T Consensus 239 l~~~~~---~e~gev~e~~~~~~~GSS~MP~K~NPv~~E~i~~~a~~~~g~~~~~~~-~~~~~~erd~~~~~~~~~~~~~ 314 (429)
T d1c3ca_ 239 IRHLQR---TEVLEVEEPFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSLE-NIALWHERDISHSSVERYVFPD 314 (429)
T ss_dssp HHHHTS---TTTCSEECCCCC-----CCCTTCCCCHHHHHHHHHHHHHHHTHHHHHH-TTCCSTTCCSHHHHHHHHHHHH
T ss_pred HHHHhh---hcceEEeeccccCCCCccccccccCCchHHHHHHHHHHhcccHHHHHH-hcchhhcccchhhhccccccch
Confidence 999995 8999999984 589999999999999999999999999999988754 4456799999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhh--Hhhhhhc----c-cccChHHHHHH----HHHHHHcCCCHHHHHHH
Q psy10160 468 IRLIADSATAFTDKCVSGIVANEENIHRLLHES--LMLVTAL----N-PHIGYDKAAKI----AKTAHKEGTTLKVAALK 536 (558)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~--~~~~~~l----a-~~l~~~~a~~~----~~~a~~~~~~~~~~~~~ 536 (558)
+..+...++.++..++++|+||++||++|++.+ +.+++.+ + +.+||++||++ +++|.++|+++.|++.+
T Consensus 315 ~~~~~~~~l~~~~~~i~~L~vn~erm~~nl~~s~g~i~Ae~~~~~Lv~~gl~~~~AheiV~~~a~~a~~~~~~l~d~l~~ 394 (429)
T d1c3ca_ 315 ATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNSEKHFLEYLLE 394 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTTTTGGGHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSSCHHHHHHT
T ss_pred hHHHHHhHhhHHHHHhhccccchHHHHHHHHhhcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHHHhc
Confidence 999999999999999999999999999999754 3444333 3 34899999986 45677899999999886
Q ss_pred c----CCCCHHHHhhhcCcccccCC
Q psy10160 537 L----GYLTEEEFNKWVVPEDMLGP 557 (558)
Q Consensus 537 ~----~~l~~~~~~~~~~p~~~~~~ 557 (558)
. ..|+++||+++|||++|+|.
T Consensus 395 d~~~~~~ls~eel~~lldP~~ylg~ 419 (429)
T d1c3ca_ 395 DEEVKKLVTKEELEELFDISYYLKH 419 (429)
T ss_dssp CHHHHTTCCHHHHHHTTCTHHHHTT
T ss_pred ChhhhccCCHHHHHHHcCHHHHHhH
Confidence 4 67999999999999999985
|
| >d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Adenylosuccinate lyase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=8.9e-50 Score=402.26 Aligned_cols=302 Identities=15% Similarity=0.090 Sum_probs=253.5
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
+.++|+|.+++|+.+++.. ...+.....+...+.. .... .+++|.||||+|+|+|+|+|||+++ |++.|.
T Consensus 77 ~~~vH~G~SsnD~~~Ta~~-l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTh~Q~A~P~T~G~~~~~-~~~~l~ 154 (408)
T d1f1oa_ 77 RKWVHYGLTSTDVVDTALS-YLLKQANDILLKDLERFVDIIKEKAKEHKYTVMMGRTHGVHAEPTTFGLKLAL-WHEEMK 154 (408)
T ss_pred hhhhcCCCCHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHhCCccccchHhcCCCCCccHHHHHHH-HHHHHH
Confidence 4689999999999998876 4555444434333332 2233 7899999999999999999999998 999999
Q ss_pred chHHHHHhHhhhh---hhhcCCCCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhhh
Q psy10160 313 PNDRQALNIVSIF---YFTYLVKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAND 389 (558)
Q Consensus 313 ~~~~~l~~~~~~~---~~~g~~g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~d 389 (558)
|+++||.+.+.++ +++|++|++..+++.+++.+++.|||...+. .+++++||+++|++++|++++++|+|||+|
T Consensus 155 r~~~rL~~~~~~~~~~~lGGA~Gt~~~~~~~~~~~~~~~lg~~~~~~---~~~~~~rd~~~e~~~~l~~la~~l~kia~D 231 (408)
T d1f1oa_ 155 RNLERFKQAKAGIEVGKISGAVGTYANIDPFVEQYVCEKLGLKAAPI---STQTLQRDRHADYMATLALIATSIEKFAVE 231 (408)
T ss_pred HHHHHHHHHHHhhhccccchhhhcccCCChhHHHHHHHHhcCcCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999777554 5567899999988889999999999974433 347999999999999999999999999999
Q ss_pred hhhhccCCCccccceecC--CCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHH
Q psy10160 390 IRFLASGPRCGLGELSLP--ENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRS 467 (558)
Q Consensus 390 ~~~~~s~~~~e~~e~~~~--~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (558)
+++|+| +|++++.++ ++++|||||||||||+.+|+++++++.+.|+...++.. ...+++++...|...|.++++
T Consensus 232 l~~~~s---~~~~~~~e~~~~~~~GSSiMP~K~NP~~~E~v~~~~~~~~g~~~~~~~~-~~~~~erd~~~~~~~~~~l~~ 307 (408)
T d1f1oa_ 232 IRGLQK---SETREVEEFFAKGQKGSSAMPHKRNPIGSENMTGMARVIRGYMMTAYEN-VPLWHERDISHSSAERIILPD 307 (408)
T ss_pred HHHHHh---cccceeeecccCCCCCcccccccccccHHHHHHHHhccchhhHHHHHHh-ccchhhccchhhHHHhhcchh
Confidence 999997 566666543 46899999999999999999999999999998877544 567799999999889999999
Q ss_pred HHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhh--Hhhhhh----cc-cccChHHHHHH----HHHHHHcCCCHHHHHHH
Q psy10160 468 IRLIADSATAFTDKCVSGIVANEENIHRLLHES--LMLVTA----LN-PHIGYDKAAKI----AKTAHKEGTTLKVAALK 536 (558)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~--~~~~~~----la-~~l~~~~a~~~----~~~a~~~~~~~~~~~~~ 536 (558)
+..+...++..+..++++|+||+++|++|++.+ ++++++ |+ ..++|++||++ +++|.++|++++|++.+
T Consensus 308 ~~~~~~~~l~~~~~~l~~l~vn~e~m~~nl~~~~~~~~a~~~~~~Lv~~gl~~~~Ah~~v~~~~~~a~~~~~~l~e~l~~ 387 (408)
T d1f1oa_ 308 ATIALNYMLNRFSNIVKNLTVFPENMKRNMDRTLGLIYSQRVLLALIDTGLTREEAYDTVQPKAMEAWEKQVPFRELVEA 387 (408)
T ss_pred HHHHHHHHHHHHHHHhhCCeeCHHHHHHHHHhhcCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHc
Confidence 999999999999999999999999999999754 444433 33 34889999875 56778899999999886
Q ss_pred c----CCCCHHHHhhhcCc
Q psy10160 537 L----GYLTEEEFNKWVVP 551 (558)
Q Consensus 537 ~----~~l~~~~~~~~~~p 551 (558)
. ..|++++|+++|||
T Consensus 388 ~~~i~~~Ls~eel~~~lDp 406 (408)
T d1f1oa_ 388 EEKITSRLSPEKIADCFDY 406 (408)
T ss_pred cHHhhcCCCHHHHHHhcCC
Confidence 3 56999999999999
|
| >d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Argininosuccinate lyase/delta-crystallin species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-49 Score=408.29 Aligned_cols=308 Identities=15% Similarity=0.130 Sum_probs=251.8
Q ss_pred eceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhcccccccc
Q psy10160 240 EGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNL 311 (558)
Q Consensus 240 ~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l 311 (558)
.+.++|+|.+.+|++.++.. ...+..+.-+...+.. ...+ .+++|.||||+|+|+|+|+|||+++ |++.|
T Consensus 97 ~~~~vH~G~S~nD~~~Ta~~-l~~r~~l~~l~~~l~~l~~~L~~~A~~~~~~~m~GrTH~Q~A~P~T~G~~~~~-~~~~l 174 (455)
T d1tj7a_ 97 LGKKLHTGRSRNDQVATDLK-LWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLA-YVEML 174 (455)
T ss_dssp GGGGTTTTCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHH
T ss_pred chhhccCCccchhHHHHHHH-HHHhhchhhHHHHHHHHHHHHHHHHHhhhchhhhHHHHhhhccchHHHHHHHH-HHHHH
Confidence 36789999999999988865 3444443333332222 2223 7899999999999999999999998 99999
Q ss_pred cchHHHHHhHhhhhhhhc---CCCCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhh
Q psy10160 312 DPNDRQALNIVSIFYFTY---LVKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAN 388 (558)
Q Consensus 312 ~~~~~~l~~~~~~~~~~g---~~g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~ 388 (558)
.|+++||++++.+++.++ ++|++.+++ .+++++++.|||. ....|++|++++||+++++++++++++.+|+|||+
T Consensus 175 ~r~~~rl~~~~~~~~~~~lG~~a~~g~~~~-~~~~~~a~~Lg~~-~~~~n~~~~~~~rd~~~e~~~~l~~~~~~L~ria~ 252 (455)
T d1tj7a_ 175 ARDESRLQDALKRLDVSPLGCGALAGTAYE-IDREQLAGWLGFA-SATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAE 252 (455)
T ss_dssp HHHHHHHHHHHHHHCCBCTTCTTTTCCSSC-CCHHHHHHHHTCS-SBCSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccCcCc-chHHHHHHHhCCC-cccCCccchhhchHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999888777663 344444443 6789999999998 66789999999999999999999999999999999
Q ss_pred hhhhhccCCCccccceecCC-CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHH
Q psy10160 389 DIRFLASGPRCGLGELSLPE-NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRS 467 (558)
Q Consensus 389 d~~~~~s~~~~e~~e~~~~~-~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (558)
||++|+| +|+|++.+|+ .++|||||||||||+.+|+++++|+.++|+..+++..+.+.+++++...+.....+++.
T Consensus 253 Dl~l~~s---~e~~~~~~~~~~~~GSSiMP~KrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~~~~rd~~~~~~~l~~~ 329 (455)
T d1tj7a_ 253 DLIFFNT---GEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDA 329 (455)
T ss_dssp HHHHHTS---TTTCCEECCGGGCBCCTTCTTCCBCHHHHHHHHTHHHHHHHHHHHHHHHTTCCSSCCGGGGGHHHHHHHH
T ss_pred HHHHhhh---hhhheeeccccccccccccccccCchHHHHHHhHHHHHHhHHHHHHHHHhcccHHHHhhHHHHHHHHHHH
Confidence 9999997 7899999986 59999999999999999999999999999999888777776666555444444455555
Q ss_pred HHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhcccc-----cChHHHHHH----HHHHHHcCCCHHHHHHHc-
Q psy10160 468 IRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNPH-----IGYDKAAKI----AKTAHKEGTTLKVAALKL- 537 (558)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~~-----l~~~~a~~~----~~~a~~~~~~~~~~~~~~- 537 (558)
+..+ ..++..+..++++|+||++||+++++.+++++|+||+. +||++||++ +++|.++|++++|+..+.
T Consensus 330 ~~~~-~~~l~~~~~~i~~l~vn~erm~~~~~~~~~~at~la~~Lv~kgi~freAh~~V~~~v~~A~~~g~~l~el~l~e~ 408 (455)
T d1tj7a_ 330 LDTW-LDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSEL 408 (455)
T ss_dssp HHHH-HHHHHHHHHHHTTCEECHHHHHHHHTSTTTTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCGGGSCHHHH
T ss_pred HHHH-HHHHHHHHHhhhhhhhcchhHHHHhhcchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHHhHHHH
Confidence 5555 45556778899999999999999999999888888754 699999974 667889999999876542
Q ss_pred ---CCCCHHHHhhhcCccccc
Q psy10160 538 ---GYLTEEEFNKWVVPEDML 555 (558)
Q Consensus 538 ---~~l~~~~~~~~~~p~~~~ 555 (558)
..+.++|++++|||++++
T Consensus 409 ~~~~~~~~~di~~~ldp~~~v 429 (455)
T d1tj7a_ 409 QKFSQVIDEDVYPILSLQSCL 429 (455)
T ss_dssp TTTCTTCCTTHHHHTSHHHHH
T ss_pred HHhcccCHHHHHHhCCHHHHH
Confidence 346667999999999988
|
| >d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Argininosuccinate lyase/delta-crystallin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.3e-49 Score=402.04 Aligned_cols=308 Identities=14% Similarity=0.070 Sum_probs=251.9
Q ss_pred eceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhcccccccc
Q psy10160 240 EGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNL 311 (558)
Q Consensus 240 ~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l 311 (558)
.+.++|+|.+.+|++.++.. ...+..+..+...+.. ...+ .+++|.||||+|+|+|+|+|||+++ |++.|
T Consensus 98 ~~~~vH~G~S~nD~~~Ta~~-L~~r~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~P~T~G~~~~~-~~~~l 175 (459)
T d1k62b_ 98 TAGKLHTGRSRNDQVVTDLR-LWMRQTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQPIRWSHWILS-HAVAL 175 (459)
T ss_dssp GGGGTTTTCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHH
T ss_pred cccccCCCCCcchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccccceecceeecccCCCeeHHHHHHH-HHHHH
Confidence 36789999999999988866 4455444444443332 2223 7899999999999999999999998 99999
Q ss_pred cchHHHHHhHhhhhhhh---cCCCCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhh
Q psy10160 312 DPNDRQALNIVSIFYFT---YLVKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAN 388 (558)
Q Consensus 312 ~~~~~~l~~~~~~~~~~---g~~g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~ 388 (558)
.|+++||.+++.+++.+ |++|+.++++ .++++.++.|||. .+..|++||+++||+++|++++|++++++|+|||+
T Consensus 176 ~r~~~rl~~~~~~~~~~~lGg~a~~~~~~~-~~~~~~~~~l~~~-~~~~~~~~~~~sRd~~~e~~~~l~~l~~~l~ria~ 253 (459)
T d1k62b_ 176 TRDSERLLEVRKRINVLPLGSGAIAGNPLG-VDRELLRAELNFG-AITLNSMDATSERDFVAEFLFWRSLCMTHLSRMAE 253 (459)
T ss_dssp HHHHHHHHHHHHHHSCBCTTCTTTTCCTTC-CCHHHHHHHTTCS-CBCSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcccccCCCCCcc-cchhhhhhHHhhc-cccccchhhhhcchHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999887776665 4666666664 5788999999998 77899999999999999999999999999999999
Q ss_pred hhhhhccCCCccccceecCCC-CCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHH
Q psy10160 389 DIRFLASGPRCGLGELSLPEN-EPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRS 467 (558)
Q Consensus 389 d~~~~~s~~~~e~~e~~~~~~-~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (558)
||++|++ +|||++.+|+. ++|||||||||||+.+|+++++++.+.|+.++++..+.+.++..+..... .+..+++
T Consensus 254 Dl~l~~~---~e~~~~~~~~~~~~GSSiMPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~rd~~~-~~~~l~~ 329 (459)
T d1k62b_ 254 DLILYCT---KEFSFVQLSDAYSTGSSLMPRKKNPDSLELIRSKAGRVFGRCAGLLMTLKGLPSTYNKDLQE-DKEAVFE 329 (459)
T ss_dssp HHHHHTS---TTTCSEECCGGGCEECSSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCGGGGG-HHHHHHH
T ss_pred HHHHhcc---ccccceeecccccccccccccccccHHHHHHHHHhhhhhhhhhhHHHHHhcChhhhcccchh-cchhhhh
Confidence 9999996 89999999874 88999999999999999999999999999998877777655555543333 3444555
Q ss_pred HHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhccc-----ccChHHHHHH----HHHHHHcCCCHHHHHHH--
Q psy10160 468 IRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNP-----HIGYDKAAKI----AKTAHKEGTTLKVAALK-- 536 (558)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~-----~l~~~~a~~~----~~~a~~~~~~~~~~~~~-- 536 (558)
+......++..+..++++|+||++||+++++..+ ++|+||. .++|++||++ |+.|.++|++++|+..+
T Consensus 330 ~~~~~~~~l~~~~~vi~~l~vn~erm~~~l~~~~-~At~la~~Lv~~Gi~fr~AH~~V~~lv~~a~~~g~~l~~l~~~e~ 408 (459)
T d1k62b_ 330 VSDTMSAVLQVATGVISTLQIHQENMGQALSPDM-LATDLAYYLVRKGMPFRQAHEASGKAVFMAETKGVALNQLSLQEL 408 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHCEECHHHHHHTCCGGG-THHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTSCGGGSCHHHH
T ss_pred hhHHHHhhhhhhhhccceeEechhhHHHHHhhcc-hHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHcCHHHH
Confidence 5555566667788899999999999999998664 6778774 4699999985 67888999999886443
Q ss_pred --cCCCCHHHHhhhcCcccccC
Q psy10160 537 --LGYLTEEEFNKWVVPEDMLG 556 (558)
Q Consensus 537 --~~~l~~~~~~~~~~p~~~~~ 556 (558)
...+.++||.++|||.+|+.
T Consensus 409 ~~~~~~~~~dl~~~ldp~~~v~ 430 (459)
T d1k62b_ 409 QTISPLFSGDVICVWDYRHSVE 430 (459)
T ss_dssp HTTCTTCCGGGGGTTCHHHHHT
T ss_pred HHhccccHHHHHHhCCHHHHHH
Confidence 24466779999999999983
|
| >d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Argininosuccinate lyase/delta-crystallin species: Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]
Probab=100.00 E-value=4.8e-47 Score=388.66 Aligned_cols=307 Identities=16% Similarity=0.114 Sum_probs=246.9
Q ss_pred eceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhcccccccc
Q psy10160 240 EGRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNL 311 (558)
Q Consensus 240 ~~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l 311 (558)
.+.++|+|.+.+|++.++.. ...+..+.-+...+.. ...+ .+++|.||||+|+|+|+|+||++++ |++.|
T Consensus 87 ~~~~vh~G~S~nD~~~Ta~~-l~~r~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~GrTH~Q~A~P~T~G~~~~~-~~~~l 164 (449)
T d1tjva_ 87 IAGKLHTGRSRNDQVVTDLK-LFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYDHLQKAQPIRWSQFLLS-HAVAL 164 (449)
T ss_dssp GGGGGGTTCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHH
T ss_pred hhhhcCcCCCccchHHHHHH-HHHHhhhhhHHHHHHHHHHHHHHHHHhhhccchhhhhhhhccCCccHHHHHHH-HHHHH
Confidence 36789999999999988765 3444333333332222 2223 7899999999999999999999998 99999
Q ss_pred cchHHHHHhHhhhhhhh---cCCCCChhHHHHHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHhh
Q psy10160 312 DPNDRQALNIVSIFYFT---YLVKLSELLETKCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIAN 388 (558)
Q Consensus 312 ~~~~~~l~~~~~~~~~~---g~~g~~~~~~~~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a~ 388 (558)
.|+++||.+.+.+++.+ |++|+++.++ .+++++++.+||. .+..|++||+++||+++++++++++++++|+|||+
T Consensus 165 ~r~~~rl~~~~~~~~~~~lGg~a~~~~~~~-~~~~~~~~~l~~~-~~~~~~~~~~~~rd~~~e~~~~l~~la~~L~kia~ 242 (449)
T d1tjva_ 165 TRDSERLGEVKKRINVLPLGSGALAGNPLD-IDREMLRSELEFA-SISLNSMDAISERDFVVEFLSFATLLMIHLSKMAE 242 (449)
T ss_dssp HHHHHHHHHHHHHHSEECTTCTTTTCCTTC-CCHHHHHHHHTCS-EECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcccccccccccch-hhHHHHHHHHhhh-cccCCccchhhccchHHHHHHHHHHHHHhHHHHHH
Confidence 99999999887666554 4566666653 6788999999998 77899999999999999999999999999999999
Q ss_pred hhhhhccCCCccccceecCC-CCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHH
Q psy10160 389 DIRFLASGPRCGLGELSLPE-NEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRS 467 (558)
Q Consensus 389 d~~~~~s~~~~e~~e~~~~~-~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (558)
||++|++ +|+|++++++ .++|||||||||||+.+|+++++|++++|+.++++..+.+.+++++.........++..
T Consensus 243 Dl~l~~~---~e~~~~e~~~~~~~GSSiMP~KrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~ 319 (449)
T d1tjva_ 243 DLIIYST---SEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVFDV 319 (449)
T ss_dssp HHHHHTS---TTTCSEECCGGGSEECTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSBCGGGGGHHHHHHHH
T ss_pred HHHHHhc---CchhhhcccccccccccccccccchHHHHHHHHHHHhHHHhhhhHHHHHhcCchhhhchHhhhhhhhhhH
Confidence 9999996 7888887775 58999999999999999999999999999999988887777777766544445555555
Q ss_pred HHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHhhhhhccc-----ccChHHHHH----HHHHHHHcCCCHHHHHHHc-
Q psy10160 468 IRLIADSATAFTDKCVSGIVANEENIHRLLHESLMLVTALNP-----HIGYDKAAK----IAKTAHKEGTTLKVAALKL- 537 (558)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~la~-----~l~~~~a~~----~~~~a~~~~~~~~~~~~~~- 537 (558)
+..+ ..++..+..++++++||+++|++++... .++|++|. .++|++||+ +|++|.++|++++|+..+.
T Consensus 320 ~~~~-~~~L~~~~~~l~~l~vn~e~m~~~l~~~-~~at~la~~Lv~kgipfr~Ah~~V~~~v~~A~~~g~~l~el~l~e~ 397 (449)
T d1tjva_ 320 VDTL-TAVLQVATGVISTLQISKENMEKALTPE-MLATDLALYLVRKGVPFRQAHTASGKAVHLAETKGITINKLSLEDL 397 (449)
T ss_dssp HHHH-HHHHHHHHHHHHHCEECHHHHHHTCCGG-GGHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTSCGGGSCHHHH
T ss_pred HHHH-HHHHHHhhhccchhhcccccchhhhhhh-chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHhCHHHH
Confidence 5555 4555667789999999999999998654 46777764 468999987 4677889999998864432
Q ss_pred ---CCCCHHHHhhhcCccccc
Q psy10160 538 ---GYLTEEEFNKWVVPEDML 555 (558)
Q Consensus 538 ---~~l~~~~~~~~~~p~~~~ 555 (558)
....++|++++|||++++
T Consensus 398 ~~~~~~~~~di~~~ldp~~~v 418 (449)
T d1tjva_ 398 KSISPQFSSDVSQVFNFVNSV 418 (449)
T ss_dssp HTTCTTCCGGGGGGSCHHHHH
T ss_pred HHhCccchHHHHHHcCHHHHH
Confidence 233446899999999876
|
| >d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Adenylosuccinate lyase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=100.00 E-value=9.4e-46 Score=372.83 Aligned_cols=286 Identities=19% Similarity=0.113 Sum_probs=229.2
Q ss_pred ceeeecccceeEEEEeccCCCCCCCcccccchhhhh-------hhhh-hhhhhcccccchhhhhhhHHHhhccccccccc
Q psy10160 241 GRYCQHHYYSQFCCESCTRAGQLPSYGPHIKRAVEA-------EAAA-ADKKRRSRRSLSVVNKWSLRQAFTTCYPVNLD 312 (558)
Q Consensus 241 ~~~~~~g~~~~~~c~~~~~~g~~~~~~~w~~~~l~~-------~~~~-~~~~~~grth~q~a~~~t~g~~~~~~~~~~l~ 312 (558)
++++|+|.+++|+.+++.. ...+.....+...+.. ...+ .+++|.||||+|+|+|+|+||++++ |+++|.
T Consensus 86 ~~~vH~G~TsnDi~~ta~~-l~~r~~~~~l~~~l~~l~~~L~~~a~~~~~t~m~grTH~Q~A~P~T~G~~~~~-~~~~l~ 163 (402)
T d1dofa_ 86 CRYVHYGATSNDIIDTAWA-LLIRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWAEPITLGFKFAN-YYYELY 163 (402)
T ss_dssp CSCTTTTCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHH-HHHHHH
T ss_pred HHHhhccCchHHhhhhHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHhhccccccchHHHHHHH-HHHHHH
Confidence 5689999999999998876 4444444333333332 2233 7899999999999999999999998 999999
Q ss_pred chHHHHHhHh--hhhhhhcCCCCChhHHH---HHHHHHHhHhCCCcccCCChhHHhhcCcHHHHHHHHHHHHHHHHHHHh
Q psy10160 313 PNDRQALNIV--SIFYFTYLVKLSELLET---KCAAKIAELTGLPFKSAPNKFEALAAHDALVEVSGALNTVAVSLMKIA 387 (558)
Q Consensus 313 ~~~~~l~~~~--~~~~~~g~~g~~~~~~~---~~~~~~a~~lg~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~l~k~a 387 (558)
|+++||.... ...+++|++|+++++++ .+.+.+++.||+...+..+ ++++||+++|++++|++++++|+|||
T Consensus 164 r~~~rl~~~~~~~~~~~gGa~g~~~~~~~~~~~~~~~l~~~lgl~~~~~~~---~~~~rd~~~e~~~~L~~~a~~L~kia 240 (402)
T d1dofa_ 164 IACRQLALAEEFIRAKIGGAVGTMASWGELGLEVRRRVAERLGLPHHVITT---QVAPRESFAVLASALALMAAVFERLA 240 (402)
T ss_dssp HHHHHHHHHHHHCCBCCCCTTSSCGGGGGGHHHHHHHHHHHTTCCBCSSCS---SSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccccccchhhHHHHHHHHHhcccccchhh---hhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999997654 45677889999999874 6778889999997655554 68999999999999999999999999
Q ss_pred hhhhhhccCCCccccceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHcccHHHHhhccccccccccchhhHHHHHHHH
Q psy10160 388 NDIRFLASGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTIGGSNGHFELNVFKPLIVSNVLRS 467 (558)
Q Consensus 388 ~d~~~~~s~~~~e~~e~~~~~~~~gSS~MP~K~NP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (558)
+|+++|++ +||||+.+ +++||||||||+||+.+|+++++++.+.|+.+.+ .....++++++...|..+|..+++
T Consensus 241 ~Di~~~s~---~e~ge~~e--~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~-~~~~~~~~erd~~~~~~~~~~l~~ 314 (402)
T d1dofa_ 241 VEIRELSR---PEIGEVVE--GGGGSSAMPHKANPTASERIVSLARYVRALTHVA-FENVALWHERDLTNSANERVWIPE 314 (402)
T ss_dssp HHHHHHTS---TTTCSEES--CC---------CCCHHHHHHHHHHHHHHHHHHHH-HHTTCCCTTCCGGGHHHHHHHHHH
T ss_pred HHHHHHhC---Cccccccc--ccCccccccCCCCchHHHHHhchHHHHHHHHHHH-HHhhcccccccchhhhhhhhccch
Confidence 99999995 88999965 5899999999999999999999999999986554 566678899999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCcccCHHHHHHHHhhhHh--hh----hhccc-ccChHHHHHHHH----HHHHcCCCHHHHHHH
Q psy10160 468 IRLIADSATAFTDKCVSGIVANEENIHRLLHESLM--LV----TALNP-HIGYDKAAKIAK----TAHKEGTTLKVAALK 536 (558)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~--~~----~~la~-~l~~~~a~~~~~----~a~~~~~~~~~~~~~ 536 (558)
+..+...++.++.+++++|+||++||++|++.+.. ++ +.|++ .++|++||++++ .+.++|+++.|.+.+
T Consensus 315 ~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~s~~~i~ae~~~~~L~~~gl~~~~Ah~~v~~~~~~a~e~~k~~~e~l~~ 394 (402)
T d1dofa_ 315 ALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAYKKAKEVKALTFEYQKWPVERLIE 394 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHCHHHHHHHHHHTTCCHHHHHHHHTTCCCCCCGGGGCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHccCEECHHHHHHHHHhhcChhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCChHHHHhh
Confidence 99999999999999999999999999999976542 22 33443 489999999765 455788888887765
Q ss_pred c
Q psy10160 537 L 537 (558)
Q Consensus 537 ~ 537 (558)
+
T Consensus 395 d 395 (402)
T d1dofa_ 395 D 395 (402)
T ss_dssp H
T ss_pred C
Confidence 3
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.71 E-value=5.8e-17 Score=125.32 Aligned_cols=87 Identities=25% Similarity=0.452 Sum_probs=78.5
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|.++..+. ++.+ .+++|.|.++..+|+|.|+|.|.|..|..
T Consensus 2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~-~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 79 (89)
T d1cs6a4 2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQN-RIEV-SGGELRFSKLVLEDSGMYQCVAENKHGTV 79 (89)
T ss_dssp EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCS-SEEE-ETTEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccc-eeee-eeeeEEEEeecccCCEEEEEEEEeCCCEE
Confidence 567778889999999999999999999999999999999998754 5554 46789999999999999999999999999
Q ss_pred eEEEEEEEe
Q psy10160 210 ENAVTIRVE 218 (558)
Q Consensus 210 ~~~~~l~V~ 218 (558)
..++.|.|+
T Consensus 80 ~~~~~l~V~ 88 (89)
T d1cs6a4 80 YASAELTVQ 88 (89)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 999999985
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1e-16 Score=127.39 Aligned_cols=95 Identities=20% Similarity=0.254 Sum_probs=81.1
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEcc--C-CeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE--S-NRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~--~-~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+...+ ++.+.. + .+|.|.+++.+|+|.|+|.|.|..
T Consensus 1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~ 79 (101)
T d2cqva1 1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESE-HMKVENSENGSKLTILAARQEHCGCYTLLVENKL 79 (101)
T ss_dssp CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSS-SEEEEECSSEEEEEETTCCTTTCEEEEEEEECSS
T ss_pred CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCC-cEEEEEecceeEEEEeeCCcccCEEEEEEEEECC
Confidence 345566778889999999999999999999999999999987654 444432 2 269999999999999999999999
Q ss_pred ceeeEEEEEEEeccCCCCC
Q psy10160 207 TSDENAVTIRVEGIFIHPS 225 (558)
Q Consensus 207 G~~~~~~~l~V~~~~~~p~ 225 (558)
|..+.++.|.|.+.|.+|.
T Consensus 80 G~~~~~~~l~V~~~P~pP~ 98 (101)
T d2cqva1 80 GSRQAQVNLTVVDKPDPPA 98 (101)
T ss_dssp CEEECCEEEEEECSCSCCC
T ss_pred CEEEEEEEEEEEecCCCcC
Confidence 9999999999998776664
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.68 E-value=1.6e-16 Score=125.52 Aligned_cols=92 Identities=27% Similarity=0.343 Sum_probs=80.1
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEcc-CC--eEEEccCCCCCCeEEEEEEEe
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE-SN--RLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~--sL~I~~v~~~D~G~Y~C~a~N 204 (558)
.+|.|...+.+..+.+|+.+.|.|.+.|+|.|.+.|+|++.++..+...+.... ++ +|.|.+++.+|+|.|+|.|.|
T Consensus 3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N 82 (98)
T d1g1ca_ 3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN 82 (98)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEE
Confidence 367788888899999999999999999999999999999999987664443332 22 799999999999999999999
Q ss_pred CCceeeEEEEEEEec
Q psy10160 205 SYTSDENAVTIRVEG 219 (558)
Q Consensus 205 ~~G~~~~~~~l~V~~ 219 (558)
..|..+..+.|.|+.
T Consensus 83 ~~G~~~~~~~L~V~~ 97 (98)
T d1g1ca_ 83 IAGETSSHAFLLVQA 97 (98)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CCcEEEEEEEEEEEE
Confidence 999999999999963
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.67 E-value=1.1e-16 Score=126.10 Aligned_cols=90 Identities=27% Similarity=0.378 Sum_probs=78.3
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCC---eEEEccCCCCCCeEEEEEEEeCC
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+..+. ++.+..++ +|.|.+++.+|+|.|+|.|.|..
T Consensus 2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~ 80 (97)
T d1koaa1 2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSV-KYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY 80 (97)
T ss_dssp CEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBT-TBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETT
T ss_pred CEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceee-EEEEEecCCeeEEEeCCCceecCEEEEEEEEECC
Confidence 667778888999999999999999999999999999999997654 44443332 69999999999999999999999
Q ss_pred ceeeEEEEEEEecc
Q psy10160 207 TSDENAVTIRVEGI 220 (558)
Q Consensus 207 G~~~~~~~l~V~~~ 220 (558)
|..+.++.|.|...
T Consensus 81 G~~~~~~~l~V~~~ 94 (97)
T d1koaa1 81 GTKEEIVFLNVTRH 94 (97)
T ss_dssp EEEEEEECCEEECS
T ss_pred CEEEEEEEEEEeec
Confidence 99999999999654
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=99.66 E-value=4.3e-16 Score=123.98 Aligned_cols=90 Identities=30% Similarity=0.540 Sum_probs=79.2
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEE--ccC--CeEEEccCCCCCCeEEEEEEE
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI--TES--NRLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~--~~~--~sL~I~~v~~~D~G~Y~C~a~ 203 (558)
.+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+. ++.+ ..+ .+|.|.+++.+|+|.|+|.|.
T Consensus 7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 85 (102)
T d1fhga_ 7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESR-HFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV 85 (102)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSS-SEEEEECTTCEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeecccccee-eEeEEEecCceeeeEecCCCHHhCEEEEEEEE
Confidence 46788888889999999999999999999999999999999998754 4443 222 369999999999999999999
Q ss_pred eCCceeeEEEEEEEe
Q psy10160 204 NSYTSDENAVTIRVE 218 (558)
Q Consensus 204 N~~G~~~~~~~l~V~ 218 (558)
|..|..+.++.|.|+
T Consensus 86 N~~G~~~~~~~L~V~ 100 (102)
T d1fhga_ 86 NSLGEATCTAELLVE 100 (102)
T ss_dssp ETTEEEEEEEEEEEE
T ss_pred ECCcEEEEEEEEEEE
Confidence 999999999999985
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.66 E-value=3e-16 Score=121.96 Aligned_cols=87 Identities=22% Similarity=0.344 Sum_probs=73.2
Q ss_pred eCcEEEec-CCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 128 VPVKVNIT-LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 128 ~p~~~~~~-~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
.||.+... +....+.+|+.+.|.|.+.|.|.|.+.|+|++...... ....+++|.|.+++.+|+|.|+|.|.|..
T Consensus 3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 78 (91)
T d1cs6a3 3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK----WLSSEPLLHIQNVDFEDEGTYECEAENIK 78 (91)
T ss_dssp EEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC----CSBSSSEEEECSCCGGGCEEEEEEEEETT
T ss_pred cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceE----eeeeeeEEEeCCCCccCCEEEEEEEEECC
Confidence 45666554 67888999999999999999999999999977554321 13456789999999999999999999999
Q ss_pred ceeeEEEEEEEe
Q psy10160 207 TSDENAVTIRVE 218 (558)
Q Consensus 207 G~~~~~~~l~V~ 218 (558)
|..+..+.|.|.
T Consensus 79 G~~~~~~~l~V~ 90 (91)
T d1cs6a3 79 GRDTYQGRIIIH 90 (91)
T ss_dssp EEEEEEEEEEEE
T ss_pred CEEEEEEEEEEE
Confidence 999999999885
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.65 E-value=6.3e-16 Score=119.44 Aligned_cols=86 Identities=27% Similarity=0.487 Sum_probs=73.4
Q ss_pred CcEEEecCC-ceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 129 PVKVNITLE-TQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 129 p~~~~~~~~-~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
+|.|...+. ...+.+|+.+.|.|.+.|.|.|.+.|+|+|.++..+ ++.+ .++.|.|.+++.+|+|.|+|.|.|..|
T Consensus 2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~--~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G 78 (89)
T d1biha4 2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG--RATV-TDSGLVIKGVKNGDKGYYGCRATNEHG 78 (89)
T ss_dssp EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS--SEEE-ETTEEEESSCCSTTCEEEEEEEEETTE
T ss_pred CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc--cEEE-eeeeEEECCCChhhCEEEEEEEEECCC
Confidence 456666554 456789999999999999999999999999998643 4444 345799999999999999999999999
Q ss_pred eeeEEEEEEE
Q psy10160 208 SDENAVTIRV 217 (558)
Q Consensus 208 ~~~~~~~l~V 217 (558)
.....+.|.|
T Consensus 79 ~~~~~~~l~V 88 (89)
T d1biha4 79 DKYFETLVQV 88 (89)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEE
Confidence 9999998887
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.63 E-value=3.8e-16 Score=121.99 Aligned_cols=89 Identities=18% Similarity=0.235 Sum_probs=76.7
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEc---cCCeEEEccCCCCCCeEEEEEEEeC
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT---ESNRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~---~~~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
+|.+...+.+..+.+|+.+.|.|.+.|+|.|.+.|++++..+..+.. +... ...+|.|.+++.+|+|.|+|.|.|.
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~-~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~ 80 (93)
T d1wiua_ 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE-LLVDAKSSTTSIFFPSAKRADSGNYKLKVKNE 80 (93)
T ss_dssp CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTT-SEEEEETTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeee-eeecccccceeeccccccccccEEEEEEEEEC
Confidence 57777788889999999999999999999999999999988876542 2222 2347999999999999999999999
Q ss_pred CceeeEEEEEEEe
Q psy10160 206 YTSDENAVTIRVE 218 (558)
Q Consensus 206 ~G~~~~~~~l~V~ 218 (558)
.|..+..+.|.|+
T Consensus 81 ~G~~~~~~~l~V~ 93 (93)
T d1wiua_ 81 LGEDEAIFEVIVQ 93 (93)
T ss_dssp TEEEEEEEEEEEC
T ss_pred CCEEEEEEEEEEC
Confidence 9999999999884
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=2.4e-15 Score=119.15 Aligned_cols=91 Identities=30% Similarity=0.598 Sum_probs=74.7
Q ss_pred eCcEEEecCCce--EeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCC---ceEEE-ccCCeEEEccCCCCCCeEEEEE
Q psy10160 128 VPVKVNITLETQ--VFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG---VHYRI-TESNRLHINQANATDSGEYRCV 201 (558)
Q Consensus 128 ~p~~~~~~~~~~--~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~---~~~~~-~~~~sL~I~~v~~~D~G~Y~C~ 201 (558)
.||.+...+... ++..|+.+.|.|.+.|.|.|.+.|+++|..+.... ..+.. ...++|.|.+++.+|+|.|+|.
T Consensus 2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (100)
T d1qz1a3 2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCI 81 (100)
T ss_dssp EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEE
T ss_pred cCCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEE
Confidence 477777655544 45789999999999999999999999999886532 12222 3346899999999999999999
Q ss_pred EEeCCceeeEEEEEEEe
Q psy10160 202 ASNSYTSDENAVTIRVE 218 (558)
Q Consensus 202 a~N~~G~~~~~~~l~V~ 218 (558)
|.|..|..+..+.|.|.
T Consensus 82 a~N~~G~~~~~~~l~V~ 98 (100)
T d1qz1a3 82 AENKAGEQDASIHLKVF 98 (100)
T ss_dssp EEETTEEEEEEEEEEEE
T ss_pred EEECCCEEEEEEEEEEE
Confidence 99999999999999985
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=3.6e-15 Score=115.90 Aligned_cols=88 Identities=27% Similarity=0.412 Sum_probs=75.5
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCC-ceEEEccCCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG-VHYRITESNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~-~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
+.|...|.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+.... .++....+++|.|.+++.+|+|.|+|.|.|..|.
T Consensus 2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~ 81 (92)
T d1epfa2 2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG 81 (92)
T ss_dssp SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCC
Confidence 456677889999999999999999999999999999999887643 3456666789999999999999999999998887
Q ss_pred eeEEEEEEE
Q psy10160 209 DENAVTIRV 217 (558)
Q Consensus 209 ~~~~~~l~V 217 (558)
......+.|
T Consensus 82 ~~~~~~i~V 90 (92)
T d1epfa2 82 EINFKDIQV 90 (92)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 766666665
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.58 E-value=6.7e-16 Score=119.96 Aligned_cols=85 Identities=27% Similarity=0.518 Sum_probs=72.7
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEc---cCCeEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT---ESNRLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~---~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
...|.+..+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+. ++.+. ..++|.|.+++.+|+|.|+|.|.|..|..
T Consensus 3 i~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~-~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 81 (91)
T d1tnna_ 3 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA-RHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQ 81 (91)
T ss_dssp SBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSS-SCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBC
T ss_pred EeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeeccccccc-ceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEE
Confidence 345678889999999999999999999999999998887654 32222 23579999999999999999999999999
Q ss_pred eEEEEEEEe
Q psy10160 210 ENAVTIRVE 218 (558)
Q Consensus 210 ~~~~~l~V~ 218 (558)
+..+.|.|+
T Consensus 82 ~~~~~l~V~ 90 (91)
T d1tnna_ 82 EAEFTLTIQ 90 (91)
T ss_dssp CEEEEEECC
T ss_pred EEEEEEEEE
Confidence 999999884
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=99.58 E-value=5.7e-15 Score=116.06 Aligned_cols=80 Identities=23% Similarity=0.502 Sum_probs=68.8
Q ss_pred ceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCc--eE-EEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEE
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV--HY-RITESNRLHINQANATDSGEYRCVASNSYTSDENAVT 214 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~--~~-~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 214 (558)
...+.+|+.+.|.|.+.|+|.|.+.|+|+|.++..+.. .+ .....++|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 93 (97)
T d3dara1 14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 93 (97)
T ss_dssp EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEE
Confidence 45678999999999999999999999999999875432 12 2234568999999999999999999999999999999
Q ss_pred EEE
Q psy10160 215 IRV 217 (558)
Q Consensus 215 l~V 217 (558)
|.|
T Consensus 94 l~V 96 (97)
T d3dara1 94 LDV 96 (97)
T ss_dssp EEE
T ss_pred EEE
Confidence 987
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.57 E-value=6.2e-15 Score=113.97 Aligned_cols=87 Identities=22% Similarity=0.429 Sum_probs=72.4
Q ss_pred CcEEEe-cCCceEeeCCCcEEEEeEee-ccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 129 PVKVNI-TLETQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 129 p~~~~~-~~~~~~v~~G~~v~L~C~~~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
|+.+.. .+....+.+|+.+.|.|.+. |.|.|.+.|+|++..+.... . ...+++|.|.+++.+|+|.|+|.|.|..
T Consensus 1 P~~v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~-~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 77 (89)
T d1gl4b_ 1 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR-A--MDFNGILTIRNVQPSDAGTYVCTGSNMF 77 (89)
T ss_dssp CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT-E--EEETTEEEECSCCGGGCEEEEEEEECSS
T ss_pred CCEEEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccc-c--EeeceEEEEecCCcccCEEEEEEEEECC
Confidence 344444 45677889999999999997 68899999999988776543 1 2356799999999999999999999999
Q ss_pred ceeeEEEEEEEe
Q psy10160 207 TSDENAVTIRVE 218 (558)
Q Consensus 207 G~~~~~~~l~V~ 218 (558)
|..+..+.|.|+
T Consensus 78 G~~~~~~~l~V~ 89 (89)
T d1gl4b_ 78 AMDQGTATLHVQ 89 (89)
T ss_dssp CEEEEEEEEEEC
T ss_pred CEEEEEEEEEEC
Confidence 999999999884
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=5.8e-15 Score=113.86 Aligned_cols=86 Identities=17% Similarity=0.239 Sum_probs=70.9
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEee-ccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
|+.+..++....+.+|+++.|.|.+. |.|.|.|.|++.+.++.. .......++|.|.+++.+|+|.|+|.|.|..|
T Consensus 3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~---~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g 79 (90)
T d1gsma1 3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA---VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGR 79 (90)
T ss_dssp SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC---EEEESSEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee---eeccCceeeEEcCccChhhCCcEEEEEEeCCC
Confidence 55555555667789999999999885 899999999998766522 33334456899999999999999999999999
Q ss_pred eeeEEEEEEE
Q psy10160 208 SDENAVTIRV 217 (558)
Q Consensus 208 ~~~~~~~l~V 217 (558)
..++++.|.|
T Consensus 80 ~~~~s~~l~V 89 (90)
T d1gsma1 80 TFQHTVQLLV 89 (90)
T ss_dssp EEEEEEEEEE
T ss_pred cEEEEEEEEE
Confidence 9999999987
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=8.4e-15 Score=113.36 Aligned_cols=80 Identities=16% Similarity=0.284 Sum_probs=67.8
Q ss_pred ceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
...+.+|+.+.|.|.+.|.|.|.+.|++++..+... ........++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V 88 (90)
T d1vcaa2 10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG-KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEI 88 (90)
T ss_dssp EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSS-EEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEE
T ss_pred cEEEECCCEEEEEEeccCCCCceEEEEecCccceee-eeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEE
Confidence 345678999999999999999999999988765443 2333345568999999999999999999999999999999988
Q ss_pred e
Q psy10160 218 E 218 (558)
Q Consensus 218 ~ 218 (558)
.
T Consensus 89 ~ 89 (90)
T d1vcaa2 89 Y 89 (90)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=8.5e-15 Score=111.56 Aligned_cols=82 Identities=16% Similarity=0.322 Sum_probs=68.5
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeeccCCC-eEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
|.|...|.+..+.+|+.+.|.|.+.|.|.| .|.|+|+|..+.... .+.+.|.....+|+|.|+|.|.|..|.
T Consensus 2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~-------~~~~~l~~~~~~d~G~Y~C~A~N~~G~ 74 (85)
T d1rhfa2 2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-------PSPSVLNVTGVTQSTMFSCEAHNLKGL 74 (85)
T ss_dssp CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE-------ESSEEEEECCCSSCEEEEEEEEETTEE
T ss_pred CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC-------CcceEEecCCccccEEEEEEEEcCCCc
Confidence 567778889999999999999999999998 899999999886532 234667777788999999999999996
Q ss_pred e-eEEEEEEEe
Q psy10160 209 D-ENAVTIRVE 218 (558)
Q Consensus 209 ~-~~~~~l~V~ 218 (558)
. +..++|.|+
T Consensus 75 ~~S~~~~v~Vk 85 (85)
T d1rhfa2 75 ASSRTATVHLQ 85 (85)
T ss_dssp EECCCEEEEEC
T ss_pred EEEEEEEEEEC
Confidence 6 456777763
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=3.8e-16 Score=121.69 Aligned_cols=89 Identities=18% Similarity=0.247 Sum_probs=74.5
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCe-EEEEEEEeCCc
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSG-EYRCVASNSYT 207 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G-~Y~C~a~N~~G 207 (558)
.|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+............++|.|.+++.+|.| .|+|.|.|..|
T Consensus 2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G 81 (92)
T d2ifga1 2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVG 81 (92)
T ss_dssp CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTE
T ss_pred CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCC
Confidence 46777788888999999999999999999999999999877654322222233458999999999999 69999999999
Q ss_pred eeeEEEEEEE
Q psy10160 208 SDENAVTIRV 217 (558)
Q Consensus 208 ~~~~~~~l~V 217 (558)
....++.|.|
T Consensus 82 ~~~~s~~l~V 91 (92)
T d2ifga1 82 RAEVSVQVNV 91 (92)
T ss_dssp ECCEEECCCC
T ss_pred EEEEEEEEEE
Confidence 9998888776
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=5.3e-15 Score=114.85 Aligned_cols=85 Identities=26% Similarity=0.539 Sum_probs=70.3
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEE-EccC---CeEEEccCCCCCCeEEEEEEEeCCcee-
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYR-ITES---NRLHINQANATDSGEYRCVASNSYTSD- 209 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~-~~~~---~sL~I~~v~~~D~G~Y~C~a~N~~G~~- 209 (558)
.|.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+......+. .... .+|.|.+++.+|+|.|+|.|.|..|..
T Consensus 2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 81 (91)
T d1rhfa1 2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI 81 (91)
T ss_dssp CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEE
T ss_pred cCeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEE
Confidence 35678889999999999999999999999999999876543222 2222 369999999999999999999999975
Q ss_pred eEEEEEEEec
Q psy10160 210 ENAVTIRVEG 219 (558)
Q Consensus 210 ~~~~~l~V~~ 219 (558)
+..+.|.|.+
T Consensus 82 S~~~~l~V~G 91 (91)
T d1rhfa1 82 SQPVWLTVEG 91 (91)
T ss_dssp CCCEEEEEEC
T ss_pred EEEEEEEEEC
Confidence 5778888853
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=6.1e-15 Score=112.39 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=65.7
Q ss_pred ceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
+..+.+|+.++|.|.+.|.|.|.+.|++++..+. ..+.+|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~--------~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V 79 (84)
T d2nxyb2 8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI--------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 79 (84)
T ss_dssp SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEE--------EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECE
T ss_pred CeEEECCCeEEEEEEeEcCCchheEEEeecccce--------eeeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEE
Confidence 4457899999999999999999999999765432 34567999999999999999999999999999999999
Q ss_pred ecc
Q psy10160 218 EGI 220 (558)
Q Consensus 218 ~~~ 220 (558)
.+.
T Consensus 80 ~~~ 82 (84)
T d2nxyb2 80 LAF 82 (84)
T ss_dssp ECC
T ss_pred Eec
Confidence 754
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.7e-15 Score=114.86 Aligned_cols=73 Identities=22% Similarity=0.264 Sum_probs=63.3
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEE
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTI 215 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 215 (558)
+...++.+|+.+.|.|.+.|+|.|.+.|+|++..+.... .+.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus 11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~-----------~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l 79 (84)
T d2oz4a3 11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG-----------ESVTVTRDLEGTYLCRARSTQGEVTREVTV 79 (84)
T ss_dssp CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT-----------SCEECCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee-----------eeeccccCCCCEEEEEEEcCCCEEEEEEEE
Confidence 567788999999999999999999999999987665432 245688999999999999999999999999
Q ss_pred EEec
Q psy10160 216 RVEG 219 (558)
Q Consensus 216 ~V~~ 219 (558)
.|..
T Consensus 80 ~V~~ 83 (84)
T d2oz4a3 80 NVLS 83 (84)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9964
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.54 E-value=9.5e-15 Score=114.16 Aligned_cols=88 Identities=17% Similarity=0.315 Sum_probs=72.9
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCC-eEEEEECCEEeccCCceEEE-ccCCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIENDGVHYRI-TESNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~-~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
+|.+...|.+..+.+|+.+.|.|.+.|.|.| .+.|+++|..+..+..++.. ..+++|.|.++..+|+|.|+|.|.|..
T Consensus 2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~ 81 (94)
T d1biha1 2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPA 81 (94)
T ss_dssp CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETT
T ss_pred CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCC
Confidence 5677788888999999999999999999977 69999999998765544433 345789999999999999999999999
Q ss_pred ceee-EEEEEE
Q psy10160 207 TSDE-NAVTIR 216 (558)
Q Consensus 207 G~~~-~~~~l~ 216 (558)
|... ..+.|.
T Consensus 82 G~~~s~~v~l~ 92 (94)
T d1biha1 82 GVASSRVISFR 92 (94)
T ss_dssp EEEECCCEEEE
T ss_pred CEEEEEEEEEE
Confidence 9763 444443
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.52 E-value=3.7e-14 Score=111.32 Aligned_cols=82 Identities=18% Similarity=0.321 Sum_probs=68.5
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCc-eEEE---ccCCeEEEccCCCCCCeEEEEEEEeCCcee-e
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV-HYRI---TESNRLHINQANATDSGEYRCVASNSYTSD-E 210 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~-~~~~---~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~-~ 210 (558)
+.+..+.+|+++.|.|.+.|.|.|.+.|+|+|..+..+.. ++.. ....+|.|.+++.+|+|.|+|.|.|..|.. +
T Consensus 10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 89 (97)
T d1biha3 10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK 89 (97)
T ss_dssp CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEE
T ss_pred CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEE
Confidence 4678889999999999999999999999999999875432 2221 123479999999999999999999999986 4
Q ss_pred EEEEEEE
Q psy10160 211 NAVTIRV 217 (558)
Q Consensus 211 ~~~~l~V 217 (558)
.++.|.|
T Consensus 90 ~s~~L~V 96 (97)
T d1biha3 90 HSLKLTV 96 (97)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 6788887
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.2e-14 Score=112.75 Aligned_cols=90 Identities=27% Similarity=0.515 Sum_probs=72.9
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCC-eEEEEECCEEec-----cCCceEEEccC---CeEEEccCC-CCCCeEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIP-QVFWYKDGQVIE-----NDGVHYRITES---NRLHINQAN-ATDSGEY 198 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p-~i~W~~~g~~l~-----~~~~~~~~~~~---~sL~I~~v~-~~D~G~Y 198 (558)
||.+...+....+.+|+.+.|.|.+.|.|.| .+.|+|++.... ....++.+... .+|.|.++. .+|+|.|
T Consensus 2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y 81 (101)
T d3b5ha1 2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY 81 (101)
T ss_dssp SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEE
T ss_pred CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEE
Confidence 7888888888999999999999999999988 699999753221 11234444332 379999998 5799999
Q ss_pred EEEEEeCCceeeEEEEEEEe
Q psy10160 199 RCVASNSYTSDENAVTIRVE 218 (558)
Q Consensus 199 ~C~a~N~~G~~~~~~~l~V~ 218 (558)
+|.|.|..|..+..+.|.|+
T Consensus 82 ~C~A~N~~G~~~~~~~L~Vr 101 (101)
T d3b5ha1 82 RCNGTSSKGSDQAIITLRVR 101 (101)
T ss_dssp EEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEECCCEEEEEEEEEEC
Confidence 99999999999999999884
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.52 E-value=1.2e-14 Score=114.24 Aligned_cols=89 Identities=20% Similarity=0.412 Sum_probs=72.4
Q ss_pred eCcEEEecCCceEeeCC---CcEEEEeEeeccCCCeEEEEECCEEeccCC-ceEEEccCCeEEEccCCCCCCeEEEEEEE
Q psy10160 128 VPVKVNITLETQVFGVG---SDISIPCDVDGYPIPQVFWYKDGQVIENDG-VHYRITESNRLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G---~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~-~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~ 203 (558)
.+|.|...|.+..+.+| +.+.|.|.+.|.|.|.+.|+++|..+.... .++....+..|.|..+..+|+|.|+|.|.
T Consensus 3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~ 82 (97)
T d1cs6a1 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVAT 82 (97)
T ss_dssp EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEE
T ss_pred cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEE
Confidence 46778888888888765 789999999999999999999999987643 34444445578888899999999999999
Q ss_pred eCCcee-eEEEEEE
Q psy10160 204 NSYTSD-ENAVTIR 216 (558)
Q Consensus 204 N~~G~~-~~~~~l~ 216 (558)
|..|.. +..++|+
T Consensus 83 N~~G~~~S~~a~L~ 96 (97)
T d1cs6a1 83 NARGTVVSREASLR 96 (97)
T ss_dssp ETTEEEECCCEEEE
T ss_pred ECCCEEEEEEEEEe
Confidence 999986 4456654
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=6.7e-14 Score=109.86 Aligned_cols=87 Identities=24% Similarity=0.462 Sum_probs=69.1
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccCC-CeEEEEE-CCEEeccCCceEEEcc----CCeEEEccCCCCCCeEEEEEEEeC
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYPI-PQVFWYK-DGQVIENDGVHYRITE----SNRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P~-p~i~W~~-~g~~l~~~~~~~~~~~----~~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
+.+.|....+.+|+.+.|.|.+.|.|+ |.+.|++ ++..+.....++.... .++|.|.+++.+|+|.|+|.|.|.
T Consensus 3 V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 82 (97)
T d1epfa1 3 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAE 82 (97)
T ss_dssp EEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred EEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeC
Confidence 455677888999999999999999985 7999999 4555554444444322 247999999999999999999999
Q ss_pred Ccee-eEEEEEEEe
Q psy10160 206 YTSD-ENAVTIRVE 218 (558)
Q Consensus 206 ~G~~-~~~~~l~V~ 218 (558)
.|.. +.++.|.|.
T Consensus 83 ~G~~~~~tv~l~V~ 96 (97)
T d1epfa1 83 DGTQSEATVNVKIF 96 (97)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred CCcEEEEEEEEEEE
Confidence 9976 467888774
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.49 E-value=3.9e-14 Score=108.70 Aligned_cols=80 Identities=26% Similarity=0.434 Sum_probs=65.5
Q ss_pred cCCceEeeCCCcEEEEeEeecc-CCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee-eEE
Q psy10160 135 TLETQVFGVGSDISIPCDVDGY-PIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD-ENA 212 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~-P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~-~~~ 212 (558)
.+....+.+|+.++|.|.+.+. |.+.+.|+|+|..+... ..++.|.|.+++.+|+|.|.|.|.|..|.. +..
T Consensus 6 q~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~------~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~ 79 (88)
T d2fcba2 6 QTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS------RSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKP 79 (88)
T ss_dssp ECSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE------SSCCEEEETTCCGGGCEEEEEEEEETTEEEECCC
T ss_pred eCCCCeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc------ccccccccCccCHHHCCeEEEEEEeCCCCEEeee
Confidence 3445668899999999999755 66689999999887532 245689999999999999999999999976 467
Q ss_pred EEEEEecc
Q psy10160 213 VTIRVEGI 220 (558)
Q Consensus 213 ~~l~V~~~ 220 (558)
+.|.|++|
T Consensus 80 v~l~V~~P 87 (88)
T d2fcba2 80 VTITVQAP 87 (88)
T ss_dssp EEEEECCC
T ss_pred EEEEEeCC
Confidence 88888654
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=5.7e-14 Score=112.04 Aligned_cols=81 Identities=17% Similarity=0.293 Sum_probs=65.1
Q ss_pred CCCcEEEEeEeeccCCCeEEEEECCEEeccCCceE-EEcc-----CCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy10160 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHY-RITE-----SNRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216 (558)
Q Consensus 143 ~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~-~~~~-----~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 216 (558)
.+....|.|.+.|+|.|.+.|+|+|..+..++... .... .+.|.|.+++.+|+|.|+|.|+|..|..+.++.|.
T Consensus 16 ~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~ 95 (105)
T d1wwca_ 16 LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 95 (105)
T ss_dssp CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEE
Confidence 34456688899999999999999999987654221 1111 13699999999999999999999999999999999
Q ss_pred EeccCCC
Q psy10160 217 VEGIFIH 223 (558)
Q Consensus 217 V~~~~~~ 223 (558)
|.++|.|
T Consensus 96 V~~~P~P 102 (105)
T d1wwca_ 96 FLKEPFP 102 (105)
T ss_dssp CSCCCCC
T ss_pred EEeCCCC
Confidence 9766543
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.8e-14 Score=111.54 Aligned_cols=80 Identities=19% Similarity=0.420 Sum_probs=69.4
Q ss_pred CceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIR 216 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 216 (558)
....+++|+++.|+|.+.| |.|.+.|+++|..+..+..++.+..+++|.|.+++.+|+|.|+|.|.|..|..+....|.
T Consensus 5 ~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l~ 83 (92)
T d1olza1 5 RQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVA 83 (92)
T ss_dssp EEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEEE
T ss_pred hheeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEEE
Confidence 4567899999999999999 778999999999988777777777888999999999999999999999999776555544
Q ss_pred E
Q psy10160 217 V 217 (558)
Q Consensus 217 V 217 (558)
+
T Consensus 84 ~ 84 (92)
T d1olza1 84 K 84 (92)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.48 E-value=5.1e-14 Score=110.31 Aligned_cols=84 Identities=15% Similarity=0.262 Sum_probs=70.1
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceee-EEEE
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDE-NAVT 214 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~ 214 (558)
..+..+.+|+.++|+|.+.+ |.|.+.|+++|..+...........+++|.|.+++.+|.|.|+|.|.|..|... ..+.
T Consensus 10 ~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~ 88 (96)
T d1l6za2 10 VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIK 88 (96)
T ss_dssp CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCE
T ss_pred cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEE
Confidence 45677899999999999877 568999999999998766444444556899999999999999999999999874 6789
Q ss_pred EEEecc
Q psy10160 215 IRVEGI 220 (558)
Q Consensus 215 l~V~~~ 220 (558)
|.|..+
T Consensus 89 L~V~~~ 94 (96)
T d1l6za2 89 LDIIFD 94 (96)
T ss_dssp EEECCS
T ss_pred EEEEcC
Confidence 999544
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=8.7e-14 Score=112.65 Aligned_cols=90 Identities=21% Similarity=0.319 Sum_probs=70.9
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccC---CCeEEEEECCEEecc--CCceEEEcc---------CCeEEEccCCCCCCeE
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYP---IPQVFWYKDGQVIEN--DGVHYRITE---------SNRLHINQANATDSGE 197 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P---~p~i~W~~~g~~l~~--~~~~~~~~~---------~~sL~I~~v~~~D~G~ 197 (558)
|...|.+..+.+|+.++|.|.+.|.| .|.|.|+|++..... .+.++.... ..+|.|.+++.+|+|.
T Consensus 3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 82 (113)
T d2dava1 3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN 82 (113)
T ss_dssp CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence 44567788999999999999999998 689999998743221 122222111 1269999999999999
Q ss_pred EEEEEEeCCceeeEEEEEEEeccC
Q psy10160 198 YRCVASNSYTSDENAVTIRVEGIF 221 (558)
Q Consensus 198 Y~C~a~N~~G~~~~~~~l~V~~~~ 221 (558)
|+|.|.|..|..+..+.|.|.+++
T Consensus 83 Y~C~a~N~~G~~~~~~~L~V~~~~ 106 (113)
T d2dava1 83 YRCEVTYKDKFDSCSFDLEVHEST 106 (113)
T ss_dssp EEEEEECSSCEEEECCEEEEECCC
T ss_pred EEEEEEeCCCEEEEEEEEEEEcCC
Confidence 999999999999999999997554
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=8.6e-14 Score=112.06 Aligned_cols=90 Identities=26% Similarity=0.372 Sum_probs=72.0
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeeccC---CCeEEEEECCEEeccC--CceEEEcc---------CCeEEEccCCCCCC
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDGYP---IPQVFWYKDGQVIEND--GVHYRITE---------SNRLHINQANATDS 195 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g~P---~p~i~W~~~g~~l~~~--~~~~~~~~---------~~sL~I~~v~~~D~ 195 (558)
+.|...|.+..+.+|+.++|.|.+.|.| .|.|.|+|++...... +.++.... ..+|.|.+++.+|+
T Consensus 5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 84 (110)
T d2avga1 5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT 84 (110)
T ss_dssp CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCC
T ss_pred CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHC
Confidence 3566678889999999999999999999 6889999987543221 22222111 13699999999999
Q ss_pred eEEEEEEEeCCceeeEEEEEEEec
Q psy10160 196 GEYRCVASNSYTSDENAVTIRVEG 219 (558)
Q Consensus 196 G~Y~C~a~N~~G~~~~~~~l~V~~ 219 (558)
|.|+|.|.|..|..+.++.|.|.+
T Consensus 85 G~Y~C~a~N~~G~~~~~~~L~V~~ 108 (110)
T d2avga1 85 GGYRCEVSTKDKFDCSNFNLTVHE 108 (110)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEES
T ss_pred cEEEEEEEECCCeEEEEEEEEEEe
Confidence 999999999999999999999964
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=99.47 E-value=1.4e-13 Score=110.71 Aligned_cols=89 Identities=26% Similarity=0.362 Sum_probs=67.4
Q ss_pred CcEEEe-cCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEecc----CCc-eEE-------Ec---cCCeEEEccCCC
Q psy10160 129 PVKVNI-TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN----DGV-HYR-------IT---ESNRLHINQANA 192 (558)
Q Consensus 129 p~~~~~-~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~----~~~-~~~-------~~---~~~sL~I~~v~~ 192 (558)
+|.+.. .|.+.++.+|+++.|.|.+.|.|.|.|.|+|++..... .+. ... .. ..+.|.|.++..
T Consensus 4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 83 (109)
T d2fdbp2 4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF 83 (109)
T ss_dssp CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence 455544 36789999999999999999999999999987643211 110 000 00 124799999999
Q ss_pred CCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 193 TDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 193 ~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
+|+|.|+|.|.|..|....++.|.|
T Consensus 84 ~D~G~Y~C~a~N~~G~~~~~~~L~V 108 (109)
T d2fdbp2 84 EDAGEYTCLAGNSIGISFHSAWLTV 108 (109)
T ss_dssp GGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred HHCeEEEEEEEECCCEEEEEEEEEE
Confidence 9999999999999999999999988
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.1e-13 Score=109.63 Aligned_cols=80 Identities=24% Similarity=0.515 Sum_probs=66.0
Q ss_pred eCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceE-EE--cc----CCeEEEccCCCCCCeEEEEEEEeCCceeeEEEE
Q psy10160 142 GVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHY-RI--TE----SNRLHINQANATDSGEYRCVASNSYTSDENAVT 214 (558)
Q Consensus 142 ~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~-~~--~~----~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 214 (558)
..+....+.|.+.|+|.|.+.|+|+|..+..+.... .. .. .+.|.|.+++.+|+|.|+|.|+|..|..+.++.
T Consensus 14 ~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 93 (103)
T d1wwbx_ 14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS 93 (103)
T ss_dssp CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred ccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEE
Confidence 357788899999999999999999999997654221 11 11 136999999999999999999999999999999
Q ss_pred EEEeccC
Q psy10160 215 IRVEGIF 221 (558)
Q Consensus 215 l~V~~~~ 221 (558)
|.|.+.|
T Consensus 94 v~V~~~P 100 (103)
T d1wwbx_ 94 AHFMGWP 100 (103)
T ss_dssp ECCSCCC
T ss_pred EEEEeCC
Confidence 9996544
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=5.1e-14 Score=117.20 Aligned_cols=91 Identities=22% Similarity=0.374 Sum_probs=70.9
Q ss_pred eCcEEEe-----cCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCC----------------------------
Q psy10160 128 VPVKVNI-----TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG---------------------------- 174 (558)
Q Consensus 128 ~p~~~~~-----~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~---------------------------- 174 (558)
.||.+.. .+....+.+|+.++|.|.+.|.|.|.+.|++++..+....
T Consensus 3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (130)
T d1gxea_ 3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE 82 (130)
T ss_dssp BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence 3565532 3557788999999999999999999999999876553211
Q ss_pred ceEEEcc---CCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEEe
Q psy10160 175 VHYRITE---SNRLHINQANATDSGEYRCVASNSYTSDENAVTIRVE 218 (558)
Q Consensus 175 ~~~~~~~---~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 218 (558)
.++.+.. ..+|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 83 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 129 (130)
T d1gxea_ 83 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 129 (130)
T ss_dssp SSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred ceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence 0112111 1369999999999999999999999999999999984
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=3.5e-14 Score=109.99 Aligned_cols=80 Identities=14% Similarity=0.162 Sum_probs=67.3
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeeccCC-CeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGYPI-PQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~-p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
.+|.+...+....+.+|+.+.|.|.+.|.|. +.|+|+|++..+..+. +.....+++|.|.+++.+|+|.|+|.|.|..
T Consensus 5 ~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 83 (93)
T d1n26a1 5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHP-SRWAGMGRRLLLRSVQLHDSGNYSCYRAGRP 83 (93)
T ss_dssp CCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCC-EEEEEESSEEEECSCCGGGCEEEEEESSSSC
T ss_pred CCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEcccccccee-eEEecCCCEEEECCCChhcCEEEEEEECCcc
Confidence 4677777888888999999999999999775 5899999999887655 5555667899999999999999999998765
Q ss_pred ce
Q psy10160 207 TS 208 (558)
Q Consensus 207 G~ 208 (558)
+.
T Consensus 84 ~~ 85 (93)
T d1n26a1 84 AG 85 (93)
T ss_dssp SC
T ss_pred cc
Confidence 43
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.44 E-value=1.2e-13 Score=106.09 Aligned_cols=79 Identities=20% Similarity=0.308 Sum_probs=63.9
Q ss_pred ecCCceEeeCCCcEEEEeEeec-cCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee-eE
Q psy10160 134 ITLETQVFGVGSDISIPCDVDG-YPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD-EN 211 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~-~~ 211 (558)
+.+....+.+|+.+.|.|.+.+ .|.+.+.|+|||..+... ..++.|.|.+++.+|+|.|+|.|.|..|.. +.
T Consensus 7 lq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~------~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~ 80 (89)
T d1fnla2 7 LQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF------HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSE 80 (89)
T ss_dssp EECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE------EECCCEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred EECCCCeEccCCeEEEEEEecCCCCCcEEEEEEccccccee------ccccccEECccceeccceEEEEEEeCCCCeEEe
Confidence 3445666889999999999875 466689999999877532 245689999999999999999999999876 46
Q ss_pred EEEEEEe
Q psy10160 212 AVTIRVE 218 (558)
Q Consensus 212 ~~~l~V~ 218 (558)
.+.|.|.
T Consensus 81 ~v~itV~ 87 (89)
T d1fnla2 81 TVNITIT 87 (89)
T ss_dssp CEEEEEE
T ss_pred eEEEEEE
Confidence 6788875
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.44 E-value=4.1e-14 Score=112.75 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=66.9
Q ss_pred ecCCceEeeCCCcEEEEeEe-eccCCCeEEEEECCEEecc--CCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceee
Q psy10160 134 ITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIEN--DGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDE 210 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~-~g~P~p~i~W~~~g~~l~~--~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~ 210 (558)
.+.....+.+|+.+.|.|.+ .|.|.|.+.|+|++..+.. +.+++....+++|.|.+++.+|+|.|+|.|.|..|...
T Consensus 9 ~~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~ 88 (105)
T d1cs6a2 9 EERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFIT 88 (105)
T ss_dssp SCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred CCCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEE
Confidence 34456789999999999997 7999999999999876543 33355556678999999999999999999999999887
Q ss_pred EEEE
Q psy10160 211 NAVT 214 (558)
Q Consensus 211 ~~~~ 214 (558)
.++.
T Consensus 89 ~~v~ 92 (105)
T d1cs6a2 89 KSVF 92 (105)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6543
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=3.6e-13 Score=103.42 Aligned_cols=82 Identities=22% Similarity=0.301 Sum_probs=66.3
Q ss_pred ecCCceEeeCCCcEEEEeEeeccC-CCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee-eE
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYP-IPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD-EN 211 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P-~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~-~~ 211 (558)
+.+....+.+|+.++|.|.+.+.| .+.+.|+|+|..+.... ..+.|.|.+++.+|+|.|.|.|.|..|.. +.
T Consensus 5 lq~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~------~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~ 78 (89)
T d1f2qa2 5 LQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY------ENHNISITNATVEDSGTYYCTGKVWQLDYESE 78 (89)
T ss_dssp EEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC------CSSEEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred EeCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc------ccceEEEeeeeeecCcEEEEEEEeCCCCeEee
Confidence 344556688999999999997765 44699999999886432 34679999999999999999999998876 47
Q ss_pred EEEEEEeccC
Q psy10160 212 AVTIRVEGIF 221 (558)
Q Consensus 212 ~~~l~V~~~~ 221 (558)
.+.|.|.++|
T Consensus 79 ~v~i~V~~~P 88 (89)
T d1f2qa2 79 PLNITVIKAP 88 (89)
T ss_dssp CEEEEEECSC
T ss_pred eEEEEEEeCC
Confidence 7888887654
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=2.8e-13 Score=108.13 Aligned_cols=84 Identities=21% Similarity=0.424 Sum_probs=65.3
Q ss_pred ceEeeCCCcEE---EEeEeeccCCCeEEEEECCEEeccCCceEEEc-c--------CCeEEEccCCCCCCeEEEEEEEeC
Q psy10160 138 TQVFGVGSDIS---IPCDVDGYPIPQVFWYKDGQVIENDGVHYRIT-E--------SNRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 138 ~~~v~~G~~v~---L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~--------~~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
...+..|.... +.|.+.|+|.|.+.|+|+|.++..+....... . ...|.|.++..+|+|.|+|.|.|.
T Consensus 6 ~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~ 85 (107)
T d1he7a_ 6 SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 85 (107)
T ss_dssp CCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEET
T ss_pred EeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeC
Confidence 34444555555 55589999999999999999987654322211 1 135999999999999999999999
Q ss_pred CceeeEEEEEEEeccC
Q psy10160 206 YTSDENAVTIRVEGIF 221 (558)
Q Consensus 206 ~G~~~~~~~l~V~~~~ 221 (558)
.|....++.|.|..+|
T Consensus 86 ~G~~~~~i~v~v~~~P 101 (107)
T d1he7a_ 86 FGQASASIMAAFMDNP 101 (107)
T ss_dssp TEEEEEEEEECCCSCT
T ss_pred CCEEEEEEEEEEEcCC
Confidence 9999999999997655
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.1e-13 Score=110.03 Aligned_cols=88 Identities=22% Similarity=0.262 Sum_probs=67.5
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccC-CCeEEEEECCEEeccC--CceEEEcc-C----CeEEEccCCCCCCeEEEEEEE
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYP-IPQVFWYKDGQVIEND--GVHYRITE-S----NRLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P-~p~i~W~~~g~~l~~~--~~~~~~~~-~----~sL~I~~v~~~D~G~Y~C~a~ 203 (558)
+...+....+.+|+++.|.|.+.|.| .|.+.|+|++..+... ........ + ..|.|.+++.+|+|.|+|.|.
T Consensus 6 fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 85 (104)
T d2aw2a1 6 YIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSAN 85 (104)
T ss_dssp CCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEE
T ss_pred EEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEE
Confidence 34456677899999999999999999 5899999988655321 11211111 1 159999999999999999999
Q ss_pred eCCceee-EEEEEEEec
Q psy10160 204 NSYTSDE-NAVTIRVEG 219 (558)
Q Consensus 204 N~~G~~~-~~~~l~V~~ 219 (558)
|..|... .++.|.|.+
T Consensus 86 N~~G~~~s~~~~l~V~e 102 (104)
T d2aw2a1 86 FQSNLIESHSTTLYVTD 102 (104)
T ss_dssp ETTEEEECCCEEEEEEC
T ss_pred cCCCeEEEEEEEEEEEE
Confidence 9999864 678888854
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=3.4e-13 Score=108.53 Aligned_cols=83 Identities=27% Similarity=0.519 Sum_probs=63.7
Q ss_pred ceEeeCCCcEEEEeEee-ccCCCeEEEEECCEEeccCCce---------EEE-ccCCeEEEccCCCCCCeEEEEEEEeCC
Q psy10160 138 TQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIENDGVH---------YRI-TESNRLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~-g~P~p~i~W~~~g~~l~~~~~~---------~~~-~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
...+.+|+.+.|.|.+. |.|.|.+.|+|++..+...... +.. ...+.|.|.+++.+|+|.|+|.|.|..
T Consensus 11 ~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~ 90 (110)
T d1f97a2 11 PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY 90 (110)
T ss_dssp CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSS
T ss_pred CCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECC
Confidence 34578999999999985 8999999999999887653211 111 123479999999999999999999999
Q ss_pred ceee--EEEEEEEecc
Q psy10160 207 TSDE--NAVTIRVEGI 220 (558)
Q Consensus 207 G~~~--~~~~l~V~~~ 220 (558)
|... ..++|.|.+.
T Consensus 91 G~~~~s~~v~l~V~~l 106 (110)
T d1f97a2 91 GTAMRSEAAHMDAVEL 106 (110)
T ss_dssp SCCEECCCEEEEEESS
T ss_pred CcEEEEEEEEEEEEec
Confidence 9875 4567777543
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=1.8e-13 Score=108.25 Aligned_cols=94 Identities=12% Similarity=0.228 Sum_probs=74.8
Q ss_pred eeeCcEEEecCCceEeeCCCcEEEEeEeec-cCCC--eEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEE
Q psy10160 126 YLVPVKVNITLETQVFGVGSDISIPCDVDG-YPIP--QVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVA 202 (558)
Q Consensus 126 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g-~P~p--~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a 202 (558)
|..|+.+.+.+.+..+.+|+.++|+|.+.| +|.| .+.|++++..+.... ........+|.|..+..+|+|.|+|+|
T Consensus 1 y~~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~-~~~~~~~s~l~i~~~~~dd~g~ytC~A 79 (103)
T d1iama1 1 YWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP-AVGEPAEVTTTVLVRRDHHGAQFSCRT 79 (103)
T ss_dssp EBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE-CCTTTEEEEEEEECCSSCSSCEEEEEE
T ss_pred CCCCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccc-cccccceEEEEEeeehhHCCCEEEEEE
Confidence 346889999999999999999999999986 5666 478999999886432 111112347999999999999999999
Q ss_pred EeCCceeeEEEEEEEecc
Q psy10160 203 SNSYTSDENAVTIRVEGI 220 (558)
Q Consensus 203 ~N~~G~~~~~~~l~V~~~ 220 (558)
.|..|.....+.++|..+
T Consensus 80 ~n~~g~~~~~~~~~~s~p 97 (103)
T d1iama1 80 ELDLRPQGLELFENTSAP 97 (103)
T ss_dssp EEECGGGTSCEEEEECCC
T ss_pred EeCCCCccCeEeeeEcCC
Confidence 999999888888887543
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=3e-13 Score=105.19 Aligned_cols=84 Identities=21% Similarity=0.383 Sum_probs=63.6
Q ss_pred cEEEec-CCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccC---CeEEEccCCCCCCeEEEEEEEeC
Q psy10160 130 VKVNIT-LETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITES---NRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 130 ~~~~~~-~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~---~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
|.|... +....+.+|+.+.|.|.+.+ |.|.+.|+|+|..+..++.++.+... .+|.|.++..+|+|.|+|.|.|.
T Consensus 6 ~~f~~~l~~~~~v~~G~~v~l~c~v~~-p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~ 84 (94)
T d1pd6a_ 6 TAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE 84 (94)
T ss_dssp SSCSEECCSEEEEETTSCEEEEEECSS-SSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTE
T ss_pred CcEEEeCCCCEEECcCCeEEEEEEECC-CCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEeeE
Confidence 333333 34457899999999999854 99999999999999776544444332 36999999999999999999663
Q ss_pred CceeeEEEEEEEe
Q psy10160 206 YTSDENAVTIRVE 218 (558)
Q Consensus 206 ~G~~~~~~~l~V~ 218 (558)
..++.|.|.
T Consensus 85 ----~~s~~l~V~ 93 (94)
T d1pd6a_ 85 ----KCSTELFVK 93 (94)
T ss_dssp ----EECCEEEEE
T ss_pred ----EEEEEEEEE
Confidence 455566664
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=7.2e-13 Score=105.96 Aligned_cols=80 Identities=24% Similarity=0.412 Sum_probs=64.6
Q ss_pred CceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEE-----Ecc---------CCeEEEccCCCCCCe-EEEEE
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYR-----ITE---------SNRLHINQANATDSG-EYRCV 201 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~-----~~~---------~~sL~I~~v~~~D~G-~Y~C~ 201 (558)
....+..|+.+.|.|.+.|.|.|.+.|+++|..+........ ... ...|.|.+++.+|.| .|+|.
T Consensus 10 ~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~ 89 (107)
T d1iray3 10 ETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCF 89 (107)
T ss_dssp EEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEE
T ss_pred CEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEE
Confidence 345577899999999999999999999999998865432111 111 136999999999999 59999
Q ss_pred EEeCCceeeEEEEEE
Q psy10160 202 ASNSYTSDENAVTIR 216 (558)
Q Consensus 202 a~N~~G~~~~~~~l~ 216 (558)
|.|..|..+..+.|.
T Consensus 90 A~N~~G~~~~~i~L~ 104 (107)
T d1iray3 90 AKNTHGIDAAYIQLI 104 (107)
T ss_dssp EECSSCEEEEEEEEE
T ss_pred EEeCCCeEEEEEEEE
Confidence 999999999888876
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=5e-14 Score=112.25 Aligned_cols=89 Identities=25% Similarity=0.462 Sum_probs=66.9
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEe-eccCCCeEEEEECCEEeccCCceE--------E-EccCCeEEEccCCCCCCeEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIENDGVHY--------R-ITESNRLHINQANATDSGEY 198 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~--------~-~~~~~sL~I~~v~~~D~G~Y 198 (558)
||.+.....+..+.+|+.++|.|.+ .|.|.|.+.|+|++..+....... . ....+.|.|.+++.+|+|.|
T Consensus 2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y 81 (104)
T d1nbqa2 2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY 81 (104)
T ss_dssp CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE
T ss_pred CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE
Confidence 4444444445678899999999998 589999999999998876542111 0 11235799999999999999
Q ss_pred EEEEEeCCceeeEEEEEEE
Q psy10160 199 RCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 199 ~C~a~N~~G~~~~~~~l~V 217 (558)
+|.|.|..|....+..+.|
T Consensus 82 ~C~a~N~~G~~~~s~~v~v 100 (104)
T d1nbqa2 82 SCEARNGYGTPMTSNAVRM 100 (104)
T ss_dssp EEEEECSSSCCEECCCBCC
T ss_pred EEEEEECCCceEEEEEEEE
Confidence 9999999998876544433
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=6.2e-13 Score=104.73 Aligned_cols=79 Identities=24% Similarity=0.492 Sum_probs=64.5
Q ss_pred eEeeCCCcEEEEe------EeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee---
Q psy10160 139 QVFGVGSDISIPC------DVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSD--- 209 (558)
Q Consensus 139 ~~v~~G~~v~L~C------~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~--- 209 (558)
+.+..|+...|.| .+.|+|.|.|.|+|+|.++..++.++. ..+++|.|.+++.+|+|.|+|.|.|..|..
T Consensus 9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~~~ 87 (103)
T d1iray2 9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFS-GVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYP 87 (103)
T ss_dssp EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEE-EETTEEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEE-ecCCEEEEcccccccCcEEEEEEEECcCCEEEE
Confidence 5577899999999 578999999999999999987654443 456789999999999999999999988754
Q ss_pred -eEEEEEEEe
Q psy10160 210 -ENAVTIRVE 218 (558)
Q Consensus 210 -~~~~~l~V~ 218 (558)
...+++.|.
T Consensus 88 vt~~i~~~v~ 97 (103)
T d1iray2 88 ITRVIEFITL 97 (103)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEC
Confidence 344445443
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.1e-12 Score=102.49 Aligned_cols=89 Identities=11% Similarity=0.121 Sum_probs=64.7
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEE--CCEEeccCCceEEEcc---CCeEEEccCCCCCCeEEEEEEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYK--DGQVIENDGVHYRITE---SNRLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~--~g~~l~~~~~~~~~~~---~~sL~I~~v~~~D~G~Y~C~a~ 203 (558)
.|.|. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++ ++...........+.. .++|.|.++..+|+|.|+|.|.
T Consensus 2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 80 (96)
T d2c9aa1 2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR 80 (96)
T ss_dssp SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEE
T ss_pred cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEE
Confidence 46665 5788899999999999999999988755432 2222222121222222 2479999999999999999999
Q ss_pred eCCcee-eEEEEEEEe
Q psy10160 204 NSYTSD-ENAVTIRVE 218 (558)
Q Consensus 204 N~~G~~-~~~~~l~V~ 218 (558)
|..|.. +..+.|.|+
T Consensus 81 N~~G~~~s~~a~L~Vk 96 (96)
T d2c9aa1 81 TEGGVGISNYAELVVK 96 (96)
T ss_dssp ETTEEEEEEEEEEEEC
T ss_pred eCCCeEEEEEEEEEEC
Confidence 999986 455788873
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=2e-13 Score=108.90 Aligned_cols=88 Identities=16% Similarity=0.281 Sum_probs=68.1
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCC-----------ceEEEccCCeEEEccCCCCCCeE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG-----------VHYRITESNRLHINQANATDSGE 197 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~-----------~~~~~~~~~sL~I~~v~~~D~G~ 197 (558)
++.+...+....+.+|+++.|.|.+.|.|.|.+.|+|++..+.... .+.. ..+++|.|.+++.+|+|.
T Consensus 4 ~v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~ 82 (105)
T d1nbqa1 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVT-FLPTGITFKSVTREDTGT 82 (105)
T ss_dssp CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCE-EETTEEECSCCCTTSCSE
T ss_pred ceEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceee-ecCceEEEecccccceee
Confidence 3445556667778999999999999999999999999764433210 1111 124589999999999999
Q ss_pred EEEEEEeCCceeeEEEEEEE
Q psy10160 198 YRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 198 Y~C~a~N~~G~~~~~~~l~V 217 (558)
|+|.|.|..|.....+.|.|
T Consensus 83 Y~C~a~n~~G~~~~~~~v~v 102 (105)
T d1nbqa1 83 YTCMVSEEGGNSYGEVKVKL 102 (105)
T ss_dssp EEEEEEETTSSCEECCEEEC
T ss_pred EEEEEEECCCCEEEEEEEEE
Confidence 99999999999987766665
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.35 E-value=8.7e-13 Score=104.45 Aligned_cols=86 Identities=19% Similarity=0.328 Sum_probs=66.0
Q ss_pred EEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEecc----C-------CceEEEccCCeEEEccCCCCCCeEEE
Q psy10160 131 KVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN----D-------GVHYRITESNRLHINQANATDSGEYR 199 (558)
Q Consensus 131 ~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~----~-------~~~~~~~~~~sL~I~~v~~~D~G~Y~ 199 (558)
.+..++....+.+|+++.|.|.+.|.|.|.+.|++++..... . ..+.. ..+++|.|.+++.+|+|.|+
T Consensus 3 sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~tL~I~~v~~~D~G~Y~ 81 (102)
T d1f97a1 3 SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT-FSSSGITFSSVTRKDNGEYT 81 (102)
T ss_dssp EEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEE-EETTEEEESCCCGGGCEEEE
T ss_pred CEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEE-ecCCEEEEeECCccCCEEEE
Confidence 345566678889999999999999999999999985432211 0 11111 23468999999999999999
Q ss_pred EEEEeCCceeeEEEEEEE
Q psy10160 200 CVASNSYTSDENAVTIRV 217 (558)
Q Consensus 200 C~a~N~~G~~~~~~~l~V 217 (558)
|.|.|..|.....+.+.|
T Consensus 82 C~a~n~~g~~~~~~~v~v 99 (102)
T d1f97a1 82 CMVSEEGGQNYGEVSIHL 99 (102)
T ss_dssp EEEEETTSSSEEEEEEEE
T ss_pred EEEEECCCCEEEEEEEEE
Confidence 999999999877666655
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=2.1e-12 Score=99.46 Aligned_cols=81 Identities=25% Similarity=0.451 Sum_probs=64.3
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCC-ceEEEccCC---eEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDG-VHYRITESN---RLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~-~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
..++.+..+.+|+.+.|.|.+. .|.|.+.|+|++.++..+. .++.+..++ +|.|.+++.+|+|.|+|.|.|.
T Consensus 4 ~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~--- 79 (90)
T d1x44a1 4 TKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG--- 79 (90)
T ss_dssp SBCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE---
T ss_pred EcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc---
Confidence 4456788899999999999995 6899999999999886543 345444432 7999999999999999999773
Q ss_pred eeEEEEEEEe
Q psy10160 209 DENAVTIRVE 218 (558)
Q Consensus 209 ~~~~~~l~V~ 218 (558)
..++.|.|+
T Consensus 80 -~~~a~l~V~ 88 (90)
T d1x44a1 80 -QSSAKLSVD 88 (90)
T ss_dssp -EEEEEEEEE
T ss_pred -eEEEEEEEE
Confidence 455667664
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=5.6e-12 Score=99.02 Aligned_cols=86 Identities=20% Similarity=0.228 Sum_probs=69.1
Q ss_pred cCCceEeeCCCcEEEEeEee-ccCCCeEEEEECCEEeccC--CceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeE
Q psy10160 135 TLETQVFGVGSDISIPCDVD-GYPIPQVFWYKDGQVIEND--GVHYRITESNRLHINQANATDSGEYRCVASNSYTSDEN 211 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~-g~P~p~i~W~~~g~~l~~~--~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~ 211 (558)
.+...+..+|+.+.|.|.+. +.|.|.|.|+|++..+... ........+++|.|.+++.+|+|.|+|.|.|..|....
T Consensus 8 ~~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~ 87 (101)
T d1iray1 8 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRI 87 (101)
T ss_dssp CCCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEE
T ss_pred CCcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEE
Confidence 34556678899999999885 7899999999998665432 11112235678999999999999999999999999999
Q ss_pred EEEEEEecc
Q psy10160 212 AVTIRVEGI 220 (558)
Q Consensus 212 ~~~l~V~~~ 220 (558)
++.|.|...
T Consensus 88 ~~~L~V~~~ 96 (101)
T d1iray1 88 KISAKFVEN 96 (101)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEEeC
Confidence 999999643
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.29 E-value=4.5e-12 Score=96.00 Aligned_cols=73 Identities=23% Similarity=0.389 Sum_probs=61.1
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCe-EEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQ-VFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
+|.+.+.|....+.+|+.++|+|.+.|.|.|. +.|++++..+.. .+.+|.|.+++.+|+|.|+|.|.|..+
T Consensus 5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~a~~s~~ 76 (84)
T d1fnla1 5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS--------QASSYFIDAATVNDSGEYRCQTNLSTL 76 (84)
T ss_dssp CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES--------SCSEEEESSCCGGGCEEEEEECSSSCC
T ss_pred CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee--------cceeeEecCCcccCCEEEEEEccCCCc
Confidence 45677788888899999999999999999986 567888876643 345799999999999999999988765
Q ss_pred ee
Q psy10160 208 SD 209 (558)
Q Consensus 208 ~~ 209 (558)
+.
T Consensus 77 S~ 78 (84)
T d1fnla1 77 SD 78 (84)
T ss_dssp CC
T ss_pred cc
Confidence 44
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=99.26 E-value=4.1e-13 Score=103.17 Aligned_cols=81 Identities=21% Similarity=0.243 Sum_probs=65.1
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCC---eEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESN---RLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
+..++.+..+.+|+++.|.|.+ +.|.|.+.|+|+|.++..++ ++.+...+ +|.|.+++.+|+|.|+|.|.|..+
T Consensus 4 i~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~- 80 (89)
T d1tiua_ 4 VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASP-DCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS- 80 (89)
T ss_dssp CSBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSS-SCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC-
T ss_pred EEcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccce-eEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE-
Confidence 3456678899999999999998 57999999999999987754 55554433 699999999999999999877543
Q ss_pred eeEEEEEEEe
Q psy10160 209 DENAVTIRVE 218 (558)
Q Consensus 209 ~~~~~~l~V~ 218 (558)
++.|.|.
T Consensus 81 ---sa~l~V~ 87 (89)
T d1tiua_ 81 ---AANLKVK 87 (89)
T ss_dssp ---CEEEEEE
T ss_pred ---EEEEEEE
Confidence 4566664
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=3.5e-13 Score=109.38 Aligned_cols=96 Identities=23% Similarity=0.325 Sum_probs=74.0
Q ss_pred eeeeCcEEEecCCceEeeCCCcEEEEeEeeccC-CCeEEEEECCEEeccCC-ceEEEcc----C---CeEEEccCCCCC-
Q psy10160 125 GYLVPVKVNITLETQVFGVGSDISIPCDVDGYP-IPQVFWYKDGQVIENDG-VHYRITE----S---NRLHINQANATD- 194 (558)
Q Consensus 125 ~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~P-~p~i~W~~~g~~l~~~~-~~~~~~~----~---~sL~I~~v~~~D- 194 (558)
.+..||.+.. +....+.+|+.+.|.|.+.|.| .+.+.|++++..+.... .++.+.. + .+|.|.+++.+|
T Consensus 3 ~V~~Pp~i~~-~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~ 81 (115)
T d2crya1 3 TVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADF 81 (115)
T ss_dssp CCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHH
T ss_pred EEecCCEEec-CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcC
Confidence 3456787754 4556788999999999999965 55799999998876532 2333221 1 269999999999
Q ss_pred CeEEEEEEEeCCceeeEEEEEEEeccC
Q psy10160 195 SGEYRCVASNSYTSDENAVTIRVEGIF 221 (558)
Q Consensus 195 ~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 221 (558)
+|.|+|.|.|..|..+..+.|.|.+..
T Consensus 82 ~G~Y~C~A~N~~G~~~~~~~L~V~~~~ 108 (115)
T d2crya1 82 QTIYNCTAWNSFGSDTEIIRLKEQGSE 108 (115)
T ss_dssp HSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred CeEEEEEEEECCCeEEEEEEEEEECCC
Confidence 799999999999999999999997543
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.26 E-value=4.7e-12 Score=96.20 Aligned_cols=78 Identities=22% Similarity=0.406 Sum_probs=64.0
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeeccCCCe-EEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQ-VFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
|.+.+.|....+.+|+.++|.|.+.+.|.|. +.|+++|..+... ++.|.|.+++.+|+|.|+|.|.|..++
T Consensus 5 p~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~--------~~~l~i~~v~~~dsG~Y~C~a~ns~~S 76 (85)
T d2fcba1 5 AVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH--------TQPSYRFKANNNDSGEYTCQTGQTSLS 76 (85)
T ss_dssp CEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC--------CSSEEEEECCGGGCEEEEEECTTSBCC
T ss_pred CEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccc--------ccceEEeeccccCCcEEEEECCCCccc
Confidence 4566777788899999999999999999874 8899999887543 357999999999999999999987655
Q ss_pred eeEEEEEEE
Q psy10160 209 DENAVTIRV 217 (558)
Q Consensus 209 ~~~~~~l~V 217 (558)
. .+.|.|
T Consensus 77 ~--~v~l~V 83 (85)
T d2fcba1 77 D--PVHLTV 83 (85)
T ss_dssp C--CEEEEE
T ss_pred c--cEEEEE
Confidence 4 445555
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=3.3e-12 Score=96.29 Aligned_cols=78 Identities=24% Similarity=0.474 Sum_probs=60.0
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeeccCCCe-EEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQ-VFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
|.+.+.|....+.+|+.++|.|.+.|.|.|. +.|++++..+.. .+.+|.|.+++.+|+|.|.|.|.|..++
T Consensus 2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~~v~~~d~G~Y~C~a~~s~~S 73 (82)
T d1f2qa1 2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE--------TNSSLNIVNAKFEDSGEYKCQHQQVNES 73 (82)
T ss_dssp CCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC--------CSSEEEECSCCGGGCEEEEEECTTSSCC
T ss_pred CEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeec--------ccceeEECCCChhhCCcEEEEecCCCCc
Confidence 4566677778899999999999999999986 667888877654 2357999999999999999999987654
Q ss_pred eeEEEEEEE
Q psy10160 209 DENAVTIRV 217 (558)
Q Consensus 209 ~~~~~~l~V 217 (558)
. .+.|.|
T Consensus 74 ~--~v~l~V 80 (82)
T d1f2qa1 74 E--PVYLEV 80 (82)
T ss_dssp C--CEEEEE
T ss_pred c--cEEEEE
Confidence 4 455655
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.24 E-value=3.8e-12 Score=101.90 Aligned_cols=80 Identities=18% Similarity=0.294 Sum_probs=64.3
Q ss_pred ceEeeCCCcEEEEeEe-eccCCCeEEEEECCEEeccC------CceEEEccCCeEEEccCCCCCCe---EEEEEEEeCCc
Q psy10160 138 TQVFGVGSDISIPCDV-DGYPIPQVFWYKDGQVIEND------GVHYRITESNRLHINQANATDSG---EYRCVASNSYT 207 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~-~g~P~p~i~W~~~g~~l~~~------~~~~~~~~~~sL~I~~v~~~D~G---~Y~C~a~N~~G 207 (558)
+.++.+|+.+.|.|.+ .|.|.|.+.|+|++..+... ..++....+++|.|.+++.+|+| .|.|.|.|..|
T Consensus 11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g 90 (111)
T d1biha2 11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAV 90 (111)
T ss_dssp EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTC
T ss_pred cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCC
Confidence 4456799999999997 89999999999987655321 22455667789999999998877 79999999999
Q ss_pred eeeEEEEEEE
Q psy10160 208 SDENAVTIRV 217 (558)
Q Consensus 208 ~~~~~~~l~V 217 (558)
.....+.+.+
T Consensus 91 ~~~~~~~~~~ 100 (111)
T d1biha2 91 DEEVVLVEYE 100 (111)
T ss_dssp SSCEEEEEEE
T ss_pred CceEEEEEEE
Confidence 9877665554
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=9.3e-12 Score=98.80 Aligned_cols=88 Identities=15% Similarity=0.329 Sum_probs=63.4
Q ss_pred EEEecCCceEeeCCCcEEEEeEeec-cC--CCeEEEEECCEEeccCCceEEEc---cC--CeEEEccCCCCCCeEEEEEE
Q psy10160 131 KVNITLETQVFGVGSDISIPCDVDG-YP--IPQVFWYKDGQVIENDGVHYRIT---ES--NRLHINQANATDSGEYRCVA 202 (558)
Q Consensus 131 ~~~~~~~~~~v~~G~~v~L~C~~~g-~P--~p~i~W~~~g~~l~~~~~~~~~~---~~--~sL~I~~v~~~D~G~Y~C~a 202 (558)
.+.+.+.+..+.+|+.++|+|.+.| +| .+.+.|+|++..+..+. ..... .+ ..|.|.....+|.|.|+|+|
T Consensus 4 ~v~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~-~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A 82 (106)
T d1zxqa1 4 QVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYET-FGKAAPAPQEATATFNSTADREDGHRNFSCLA 82 (106)
T ss_dssp CCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEE-CCSSTTCTTCEEEEEEEECCGGGGGCEEEEEE
T ss_pred CCEecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecc-cceEeecccceeEEEEEeeehhcCCcEEEEEE
Confidence 3445566667889999999999987 44 45799999999886432 11111 11 24777777778888999999
Q ss_pred EeCCceeeEEEEEEEec
Q psy10160 203 SNSYTSDENAVTIRVEG 219 (558)
Q Consensus 203 ~N~~G~~~~~~~l~V~~ 219 (558)
.|..|.....+.+.+..
T Consensus 83 ~n~~~~~~~~~~~~~s~ 99 (106)
T d1zxqa1 83 VLDLMSRGGNIFHKHSA 99 (106)
T ss_dssp EEECGGGTCCEEEEECC
T ss_pred EecCCCCCCeeEecccC
Confidence 99998877777777743
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.94 E-value=1.4e-09 Score=84.37 Aligned_cols=79 Identities=18% Similarity=0.286 Sum_probs=61.6
Q ss_pred EeeCCCcEEEEeEee-c-cCCCeEEEEECCEEecc---------CCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCce
Q psy10160 140 VFGVGSDISIPCDVD-G-YPIPQVFWYKDGQVIEN---------DGVHYRITESNRLHINQANATDSGEYRCVASNSYTS 208 (558)
Q Consensus 140 ~v~~G~~v~L~C~~~-g-~P~p~i~W~~~g~~l~~---------~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~ 208 (558)
....|++|.|.|... . .+...|.|+|++..+.. .++++.+..+++|.|.+++.+|+|.|+|.+.|..|.
T Consensus 6 ~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~ 85 (98)
T d1hnga1 6 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGT 85 (98)
T ss_dssp EEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCC
T ss_pred EEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCCC
Confidence 346899999999742 2 23346999998876631 123566777899999999999999999999999998
Q ss_pred e--eEEEEEEEe
Q psy10160 209 D--ENAVTIRVE 218 (558)
Q Consensus 209 ~--~~~~~l~V~ 218 (558)
. +..+.|.|.
T Consensus 86 ~~~~~~~~L~V~ 97 (98)
T d1hnga1 86 RILNKALDLRIL 97 (98)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEEEE
Confidence 6 577788874
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=6.8e-10 Score=85.58 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=57.2
Q ss_pred ceEeeCCCcEEEEeEeeccCCCeEEEEECCEEecc---C--------CceEEE-ccCCeEEEccCCCCCCeEEEEEEEeC
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEN---D--------GVHYRI-TESNRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~---~--------~~~~~~-~~~~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
+.....|++|+|.|.+. .|.+.|.|++++..+.. . ..+..+ ..+++|+|.+++.+|+|.|.|.+.|.
T Consensus 4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~ 82 (93)
T d1ccza1 4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI 82 (93)
T ss_dssp EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence 34567899999999864 58899999999876531 0 112222 23568999999999999999999988
Q ss_pred CceeeEEEEEEE
Q psy10160 206 YTSDENAVTIRV 217 (558)
Q Consensus 206 ~G~~~~~~~l~V 217 (558)
.+... +.|.|
T Consensus 83 ~~t~~--~~l~V 92 (93)
T d1ccza1 83 TDTMK--FFLYV 92 (93)
T ss_dssp CSCEE--EEEEE
T ss_pred CcEEE--EEEEE
Confidence 77554 55544
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.83 E-value=1.7e-08 Score=82.42 Aligned_cols=87 Identities=22% Similarity=0.332 Sum_probs=61.8
Q ss_pred cCCceEeeCCCcEEEEeEeeccC---CCeEEEEECCEEe-----------cc-----CCceEEEcc------CCeEEEcc
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYP---IPQVFWYKDGQVI-----------EN-----DGVHYRITE------SNRLHINQ 189 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P---~p~i~W~~~g~~l-----------~~-----~~~~~~~~~------~~sL~I~~ 189 (558)
+.....+.+|++++|.|.+.+.+ ...+.|++.+... .. ...+..... +.+|.|.+
T Consensus 8 p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~ 87 (126)
T d1pkoa_ 8 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQN 87 (126)
T ss_dssp CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESS
T ss_pred CCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEE
Confidence 34457788999999999976433 2358999865311 00 011222211 23799999
Q ss_pred CCCCCCeEEEEEEEeCCceeeEEEEEEEeccC
Q psy10160 190 ANATDSGEYRCVASNSYTSDENAVTIRVEGIF 221 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 221 (558)
++.+|+|.|.|.+.|..+..+..+.|.|.+|+
T Consensus 88 v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~ 119 (126)
T d1pkoa_ 88 VRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF 119 (126)
T ss_dssp CCGGGCEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred EchhHCeEEEEEEEECCCEEEEEEEEEEeCCC
Confidence 99999999999999999999999999997654
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.79 E-value=3e-09 Score=83.93 Aligned_cols=79 Identities=13% Similarity=0.135 Sum_probs=57.8
Q ss_pred eEeeCCCcEEEEeEeeccCCCeEEEEECCEEec------------------cCCceEEEccCCeEEEccCCCCCCeEEEE
Q psy10160 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIE------------------NDGVHYRITESNRLHINQANATDSGEYRC 200 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~------------------~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C 200 (558)
..+.+|++|.|.|.........+.|+|...... .-..|..+..+++|.|.+++.+|+|.|+|
T Consensus 9 ~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c 88 (107)
T d1l6za1 9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTL 88 (107)
T ss_dssp SSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEE
T ss_pred CcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEE
Confidence 346799999999984443456799998542110 01236777788999999999999999999
Q ss_pred EEEeCCce-eeEEEEEEE
Q psy10160 201 VASNSYTS-DENAVTIRV 217 (558)
Q Consensus 201 ~a~N~~G~-~~~~~~l~V 217 (558)
.+.+..+. .+..+.|.|
T Consensus 89 ~v~~~~~~~~~~~v~L~V 106 (107)
T d1l6za1 89 DMTDENYRRTQATVRFHV 106 (107)
T ss_dssp EEEETTEEECCCCEEECC
T ss_pred EEEECCCCEEEEEEEEEE
Confidence 99988654 445666665
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=1.3e-07 Score=76.64 Aligned_cols=82 Identities=15% Similarity=0.297 Sum_probs=58.4
Q ss_pred CceEeeCCCcEEEEeEeeccCCC----eEEEEECCE----------------EeccC----CceEEEcc------CCeEE
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIP----QVFWYKDGQ----------------VIEND----GVHYRITE------SNRLH 186 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p----~i~W~~~g~----------------~l~~~----~~~~~~~~------~~sL~ 186 (558)
....+.+|+++.|.|...+.+.+ .+.|++... ..... ..|..... +.+|+
T Consensus 12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~ 91 (124)
T d1eaja_ 12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASIN 91 (124)
T ss_dssp EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEE
T ss_pred ceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEE
Confidence 34567899999999998765443 488987211 01000 11333321 23799
Q ss_pred EccCCCCCCeEEEEEEEeCCceeeEEEEEEEe
Q psy10160 187 INQANATDSGEYRCVASNSYTSDENAVTIRVE 218 (558)
Q Consensus 187 I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 218 (558)
|.+++.+|+|.|.|.+.|..|..+..+.|.|.
T Consensus 92 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~ 123 (124)
T d1eaja_ 92 VTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 123 (124)
T ss_dssp ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence 99999999999999999999988888888874
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.34 E-value=1e-06 Score=68.72 Aligned_cols=72 Identities=17% Similarity=0.342 Sum_probs=50.4
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CE--Ee--c-------cCCceEEEccC---CeEEEccCCCCCCe
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQ--VI--E-------NDGVHYRITES---NRLHINQANATDSG 196 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~--~l--~-------~~~~~~~~~~~---~sL~I~~v~~~D~G 196 (558)
...|....+.+|++++|.|.....+...+.|++. |. .+ . ....++..... .+|.|.+++.+|+|
T Consensus 4 tQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA 83 (106)
T d1a0ql1 4 TQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIA 83 (106)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCS
T ss_pred ECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCE
Confidence 3456777889999999999987766667999983 11 11 0 01123333222 37999999999999
Q ss_pred EEEEEEEe
Q psy10160 197 EYRCVASN 204 (558)
Q Consensus 197 ~Y~C~a~N 204 (558)
.|.|.+.+
T Consensus 84 ~YyCa~~~ 91 (106)
T d1a0ql1 84 TYYCLQYY 91 (106)
T ss_dssp EEEEEECS
T ss_pred eEEEEEeC
Confidence 99998654
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.31 E-value=8.7e-07 Score=70.30 Aligned_cols=75 Identities=24% Similarity=0.444 Sum_probs=53.2
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECC--EE----e--ccC-----CceEEEccC-----CeEEEccCCCC
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG--QV----I--END-----GVHYRITES-----NRLHINQANAT 193 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g--~~----l--~~~-----~~~~~~~~~-----~sL~I~~v~~~ 193 (558)
+...|....+.+|+.++|.|.....+...+.|++.. .. + ... ..++....+ .+|.|.+++.+
T Consensus 3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~ 82 (114)
T d2cdea1 3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS 82 (114)
T ss_dssp EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG
T ss_pred cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh
Confidence 344567788899999999999888777789999732 11 0 000 113333221 26999999999
Q ss_pred CCeEEEEEEEeCC
Q psy10160 194 DSGEYRCVASNSY 206 (558)
Q Consensus 194 D~G~Y~C~a~N~~ 206 (558)
|+|.|.|.+.+..
T Consensus 83 Dsg~Y~Ca~~~~~ 95 (114)
T d2cdea1 83 DSASYICVVSDRG 95 (114)
T ss_dssp GCSEEEEEEECSC
T ss_pred hCcccceeeecCC
Confidence 9999999998753
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=9.5e-07 Score=70.39 Aligned_cols=87 Identities=20% Similarity=0.240 Sum_probs=56.6
Q ss_pred cCCceEeeCCCcEEEEeEeecc---CCCeEEEEECCE--E---e-cc-------CCceEEEccC-----CeEEEccCCCC
Q psy10160 135 TLETQVFGVGSDISIPCDVDGY---PIPQVFWYKDGQ--V---I-EN-------DGVHYRITES-----NRLHINQANAT 193 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~---P~p~i~W~~~g~--~---l-~~-------~~~~~~~~~~-----~sL~I~~v~~~ 193 (558)
.|....+.+|++|+|.|..... +.-.+.|+|... . + .. ...++.+..+ .+|.|.+++.+
T Consensus 5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~ 84 (116)
T d1xeda_ 5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD 84 (116)
T ss_dssp CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence 5667778899999999986432 223478987431 1 1 00 0122322221 27999999999
Q ss_pred CCeEEEEEEEeCCceeeEEEEEEEeccC
Q psy10160 194 DSGEYRCVASNSYTSDENAVTIRVEGIF 221 (558)
Q Consensus 194 D~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 221 (558)
|+|.|.|.+..........+.|.|.+..
T Consensus 85 DsG~Y~C~v~~~~~~~~~~v~L~V~~~~ 112 (116)
T d1xeda_ 85 DSGRYKCGLGINSRGLSFDVSLEVLEHH 112 (116)
T ss_dssp GCEEEEEEESCGGGCCEEEEEEEEECCC
T ss_pred CCEEEEEEEEcCCCCceEeEEEEEECCC
Confidence 9999999987655445567888886543
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.26 E-value=2.4e-06 Score=66.60 Aligned_cols=71 Identities=17% Similarity=0.320 Sum_probs=50.8
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEe-----------ccCCceEEEccC---CeEEEccCCCCCCeE
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVI-----------ENDGVHYRITES---NRLHINQANATDSGE 197 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l-----------~~~~~~~~~~~~---~sL~I~~v~~~D~G~ 197 (558)
..|....+.+|++++|.|...+.....+.|++. +... .....++..... .+|.|.+++.+|+|.
T Consensus 6 QsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~ 85 (107)
T d1ospl1 6 QSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVAT 85 (107)
T ss_dssp CCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSE
T ss_pred eeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCc
Confidence 346678889999999999987766667999982 2111 111234544433 379999999999999
Q ss_pred EEEEEEe
Q psy10160 198 YRCVASN 204 (558)
Q Consensus 198 Y~C~a~N 204 (558)
|.|.+.+
T Consensus 86 YyCa~~~ 92 (107)
T d1ospl1 86 YFCQQYW 92 (107)
T ss_dssp EEEEECS
T ss_pred EEEeecc
Confidence 9997654
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.25 E-value=2.6e-06 Score=67.51 Aligned_cols=75 Identities=19% Similarity=0.313 Sum_probs=52.5
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEE---e-c-------cCCceEEEccC-----CeEEEccCCCCC
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQV---I-E-------NDGVHYRITES-----NRLHINQANATD 194 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~---l-~-------~~~~~~~~~~~-----~sL~I~~v~~~D 194 (558)
...+....+.+|+.++|.|.......+.+.|+|. +.. + . ....++....+ .+|.|.+++.+|
T Consensus 5 ~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 84 (115)
T d1lp9e1 5 TQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSD 84 (115)
T ss_dssp EECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGG
T ss_pred EcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeecccccccc
Confidence 3455667789999999999988877788999973 211 1 0 01123333221 269999999999
Q ss_pred CeEEEEEEEeCCc
Q psy10160 195 SGEYRCVASNSYT 207 (558)
Q Consensus 195 ~G~Y~C~a~N~~G 207 (558)
+|.|.|.+....+
T Consensus 85 sg~YyCa~~~~~~ 97 (115)
T d1lp9e1 85 SALYYCALFLASS 97 (115)
T ss_dssp CEEEEEEEEECSS
T ss_pred CccceEEEEcCCC
Confidence 9999998876543
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.23 E-value=2.7e-06 Score=66.42 Aligned_cols=73 Identities=22% Similarity=0.330 Sum_probs=50.8
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEe-----------ccCCceEEEccC---CeEEEccCCCCCCe
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVI-----------ENDGVHYRITES---NRLHINQANATDSG 196 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l-----------~~~~~~~~~~~~---~sL~I~~v~~~D~G 196 (558)
...|....+.+|++++|.|.........+.|+|. |... .....++....+ .+|.|.+++.+|+|
T Consensus 5 tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa 84 (107)
T d1j1pl_ 5 TQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFG 84 (107)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred ECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCE
Confidence 3456677889999999999987666677999973 2111 011123433222 37999999999999
Q ss_pred EEEEEEEeC
Q psy10160 197 EYRCVASNS 205 (558)
Q Consensus 197 ~Y~C~a~N~ 205 (558)
.|.|.+.+.
T Consensus 85 ~YyCa~~~~ 93 (107)
T d1j1pl_ 85 MYFCQQANS 93 (107)
T ss_dssp EEEEEECSS
T ss_pred EEEEEcCCC
Confidence 999976543
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.23 E-value=3.1e-06 Score=66.06 Aligned_cols=71 Identities=21% Similarity=0.375 Sum_probs=50.0
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEE---e--------ccCCceEEEcc---CCeEEEccCCCCCCeE
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQV---I--------ENDGVHYRITE---SNRLHINQANATDSGE 197 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~---l--------~~~~~~~~~~~---~~sL~I~~v~~~D~G~ 197 (558)
..|....+.+|++|+|.|.........+.|++. +.. + .....++.... ..+|.|.+++.+|+|.
T Consensus 6 QsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~ 85 (107)
T d1kcvl1 6 QSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDAD 85 (107)
T ss_dssp ESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred CcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCce
Confidence 456677889999999999988777777999973 211 1 00112333222 2369999999999999
Q ss_pred EEEEEEe
Q psy10160 198 YRCVASN 204 (558)
Q Consensus 198 Y~C~a~N 204 (558)
|.|.+..
T Consensus 86 YyCa~~~ 92 (107)
T d1kcvl1 86 YYCGQSY 92 (107)
T ss_dssp EEEEECS
T ss_pred EEEEecC
Confidence 9997654
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.23 E-value=1.9e-06 Score=67.13 Aligned_cols=71 Identities=17% Similarity=0.325 Sum_probs=50.0
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEe-----------ccCCceEEEcc---CCeEEEccCCCCCCeE
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVI-----------ENDGVHYRITE---SNRLHINQANATDSGE 197 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l-----------~~~~~~~~~~~---~~sL~I~~v~~~D~G~ 197 (558)
..|....+.+|++++|.|.........+.|++. |... .....++.... +.+|.|.+++.+|+|.
T Consensus 6 QsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~ 85 (106)
T d1i8ka_ 6 QSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGD 85 (106)
T ss_dssp EECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred eeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEE
Confidence 446677789999999999987766667999973 2211 01122444322 2369999999999999
Q ss_pred EEEEEEe
Q psy10160 198 YRCVASN 204 (558)
Q Consensus 198 Y~C~a~N 204 (558)
|.|.+.+
T Consensus 86 YyCa~~~ 92 (106)
T d1i8ka_ 86 YYCLQSF 92 (106)
T ss_dssp EEEEECS
T ss_pred EeEecCc
Confidence 9997654
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=1.4e-06 Score=66.84 Aligned_cols=67 Identities=18% Similarity=0.280 Sum_probs=46.9
Q ss_pred eEeeCCCcEEEEeEeeccCCCeEEEEECCEEe--cc--------C---CceEEEc----c--CCeEEEccCCCCCCeEEE
Q psy10160 139 QVFGVGSDISIPCDVDGYPIPQVFWYKDGQVI--EN--------D---GVHYRIT----E--SNRLHINQANATDSGEYR 199 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l--~~--------~---~~~~~~~----~--~~sL~I~~v~~~D~G~Y~ 199 (558)
+...+|++++|.|.....+...+.|++..... .. . ..++... . +.+|.|.+++.+|+|.|.
T Consensus 4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~ 83 (97)
T d2nxyb1 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI 83 (97)
T ss_dssp EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence 34578999999999888777789999854311 00 0 1122211 1 237999999999999999
Q ss_pred EEEEeC
Q psy10160 200 CVASNS 205 (558)
Q Consensus 200 C~a~N~ 205 (558)
|.+.|.
T Consensus 84 C~v~~~ 89 (97)
T d2nxyb1 84 CEVEDQ 89 (97)
T ss_dssp EEETTE
T ss_pred EEEecC
Confidence 998653
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=9.6e-07 Score=68.07 Aligned_cols=87 Identities=10% Similarity=0.067 Sum_probs=57.2
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceE--E-EccCCeEEEccCCCCCCeEEEEEEEeC
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHY--R-ITESNRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~--~-~~~~~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
.|.+...|.. .|..|++|+|.|.+.. +.-.+.|+|+|.......... . ......+.|.+|+.+|+|.|.|...|.
T Consensus 7 kPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~ 84 (99)
T d1ucta1 7 MPFISAKSSP-VIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIG 84 (99)
T ss_dssp CCCEEESSCS-EEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEET
T ss_pred CCEEEecCCC-ceeCCCeEEEEEcCCC-CCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECC
Confidence 4566666654 5789999999998753 455789998764221111010 0 012246999999999999999999987
Q ss_pred Ccee--eEEEEEEE
Q psy10160 206 YTSD--ENAVTIRV 217 (558)
Q Consensus 206 ~G~~--~~~~~l~V 217 (558)
.... +..+.|.|
T Consensus 85 ~~~S~~Sdpl~L~V 98 (99)
T d1ucta1 85 HYRFRYSDTLELVV 98 (99)
T ss_dssp TTEEEECCCEEEEE
T ss_pred CcccCCCCCEEEEe
Confidence 6533 34455554
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.21 E-value=5.6e-06 Score=66.00 Aligned_cols=85 Identities=19% Similarity=0.242 Sum_probs=54.0
Q ss_pred ecCCceEeeCCCcEEEEeEeecc----CCCeEEEEEC--CE----Ee---------ccC----CceEEEcc-----CCeE
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGY----PIPQVFWYKD--GQ----VI---------END----GVHYRITE-----SNRL 185 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~----P~p~i~W~~~--g~----~l---------~~~----~~~~~~~~-----~~sL 185 (558)
..+.+..+..|+.++|.|..... ....+.|++. +. .+ ... ..|+.... +.+|
T Consensus 4 ~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 83 (119)
T d1neua_ 4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSI 83 (119)
T ss_dssp ECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCE
T ss_pred cCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEE
Confidence 45667778899999999986532 2336899872 11 11 000 12344322 2479
Q ss_pred EEccCCCCCCeEEEEEEEeCCcee--eEEEEEEEe
Q psy10160 186 HINQANATDSGEYRCVASNSYTSD--ENAVTIRVE 218 (558)
Q Consensus 186 ~I~~v~~~D~G~Y~C~a~N~~G~~--~~~~~l~V~ 218 (558)
.|.+++.+|+|.|.|.+.+..+.. ...++|.|.
T Consensus 84 ~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~ 118 (119)
T d1neua_ 84 VIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF 118 (119)
T ss_dssp EECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred EECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence 999999999999999999865433 455677663
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=2.6e-06 Score=66.86 Aligned_cols=79 Identities=14% Similarity=0.210 Sum_probs=50.3
Q ss_pred eeCCCcEEEEeEeec-cCCC--eEEEEECCEEeccCCceEEEc------cCCeEEEccCCCCCCeEEEEEEEeCCcee--
Q psy10160 141 FGVGSDISIPCDVDG-YPIP--QVFWYKDGQVIENDGVHYRIT------ESNRLHINQANATDSGEYRCVASNSYTSD-- 209 (558)
Q Consensus 141 v~~G~~v~L~C~~~g-~P~p--~i~W~~~g~~l~~~~~~~~~~------~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~-- 209 (558)
+.+|+.++|.|.+.+ +|.+ .+.|++++..+.......... ....|.+.....+|...|+|+|+|..+..
T Consensus 13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~~ 92 (109)
T d1vcaa1 13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDS 92 (109)
T ss_dssp EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTT
T ss_pred ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCccc
Confidence 679999999999875 6754 589999998775321000000 11246665444445558999999986553
Q ss_pred -----eEEEEEEEec
Q psy10160 210 -----ENAVTIRVEG 219 (558)
Q Consensus 210 -----~~~~~l~V~~ 219 (558)
.....|+|..
T Consensus 93 ~~~~~~t~~~L~V~~ 107 (109)
T d1vcaa1 93 VPTVRQAVKELQVYI 107 (109)
T ss_dssp SCSEEEEEEECCEEC
T ss_pred cccccceeEEeEEEe
Confidence 3445566643
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.21 E-value=3e-06 Score=65.88 Aligned_cols=72 Identities=15% Similarity=0.286 Sum_probs=50.1
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEe----cc-------CCceEEEcc---CCeEEEccCCCCCCeE
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVI----EN-------DGVHYRITE---SNRLHINQANATDSGE 197 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l----~~-------~~~~~~~~~---~~sL~I~~v~~~D~G~ 197 (558)
..|....+.+|++++|.|.........+.|+|. |... .. ...++.... +.+|.|.+++.+|+|.
T Consensus 6 Q~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~ 85 (107)
T d1c5cl1 6 QSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFAD 85 (107)
T ss_dssp EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred ccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeE
Confidence 446677788999999999988777777999972 2211 00 111222221 2379999999999999
Q ss_pred EEEEEEeC
Q psy10160 198 YRCVASNS 205 (558)
Q Consensus 198 Y~C~a~N~ 205 (558)
|.|.+.+.
T Consensus 86 YyCa~~~~ 93 (107)
T d1c5cl1 86 YYCLQYAS 93 (107)
T ss_dssp EEEEECSS
T ss_pred EEEecCcC
Confidence 99976543
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=2.5e-06 Score=64.98 Aligned_cols=87 Identities=13% Similarity=0.114 Sum_probs=58.1
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEE-EccCCeEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYR-ITESNRLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
.|.+...|.. .|..|++|+|.|.... +...+.|+|+|........... ......+.|.+|+.+|+|.|.|...+..+
T Consensus 4 KPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~ 81 (95)
T d1olla1 4 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL 81 (95)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred CCEEEeeCCC-cccCCCcEEEEEecCC-CccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCCC
Confidence 4566666655 4679999999998743 4557889999865432110000 01113699999999999999999888655
Q ss_pred ee--eEEEEEEE
Q psy10160 208 SD--ENAVTIRV 217 (558)
Q Consensus 208 ~~--~~~~~l~V 217 (558)
.. +..+.|.|
T Consensus 82 ~S~~Sd~leL~V 93 (95)
T d1olla1 82 WSEPSNLLDLVV 93 (95)
T ss_dssp ECCCCCCEEEEE
T ss_pred ccCCCCCEEEEE
Confidence 33 45556655
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.20 E-value=7.1e-06 Score=64.75 Aligned_cols=73 Identities=15% Similarity=0.282 Sum_probs=50.7
Q ss_pred EecCCceEeeCCCcEEEEeEeecc-CCCeEEEEEC--CEE---e---------ccCCceEEEcc--C---CeEEEccCCC
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGY-PIPQVFWYKD--GQV---I---------ENDGVHYRITE--S---NRLHINQANA 192 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~-P~p~i~W~~~--g~~---l---------~~~~~~~~~~~--~---~sL~I~~v~~ 192 (558)
+..|....+.+|+.++|.|...+. ....+.|+|. +.. + ...+.+|.+.. + .+|.|.+++.
T Consensus 3 tqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 82 (114)
T d3bp5a1 3 TFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRR 82 (114)
T ss_dssp EEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCG
T ss_pred eECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCc
Confidence 456778889999999999998654 3456899972 211 1 01123454432 2 2599999999
Q ss_pred CCCeEEEEEEEeC
Q psy10160 193 TDSGEYRCVASNS 205 (558)
Q Consensus 193 ~D~G~Y~C~a~N~ 205 (558)
+|+|.|.|.+...
T Consensus 83 ~Dsg~YyCa~~~~ 95 (114)
T d3bp5a1 83 NDSGIYLCGAISL 95 (114)
T ss_dssp GGCEEEEEEEECS
T ss_pred CCCeEEEEEEEeC
Confidence 9999999987654
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.19 E-value=3.2e-06 Score=65.89 Aligned_cols=73 Identities=19% Similarity=0.347 Sum_probs=50.7
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CE---Eec--------cCCceEEEccC---CeEEEccCCCCCC
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQ---VIE--------NDGVHYRITES---NRLHINQANATDS 195 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~---~l~--------~~~~~~~~~~~---~sL~I~~v~~~D~ 195 (558)
+...|....+.+|+.|+|.|.......+.+.|++. |. .+- ....++....+ .+|.|.+++.+|+
T Consensus 4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds 83 (107)
T d1tjgl1 4 LTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDF 83 (107)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcC
Confidence 34457778889999999999987666678999983 21 110 01123333322 2699999999999
Q ss_pred eEEEEEEEe
Q psy10160 196 GEYRCVASN 204 (558)
Q Consensus 196 G~Y~C~a~N 204 (558)
|.|.|.+.+
T Consensus 84 A~YyCa~~~ 92 (107)
T d1tjgl1 84 ATYYCQQLH 92 (107)
T ss_dssp SEEEEEECS
T ss_pred ceEEEEECc
Confidence 999996554
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.19 E-value=2.6e-06 Score=68.29 Aligned_cols=74 Identities=15% Similarity=0.277 Sum_probs=53.7
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEE------e-c--c--C----------CceEEEc--cC--
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQV------I-E--N--D----------GVHYRIT--ES-- 182 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~------l-~--~--~----------~~~~~~~--~~-- 182 (558)
|.+...|....+.+|++++|.|.+.+...+.+.|+|. |.. + . . . ..++... .+
T Consensus 2 ~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 81 (122)
T d1nezg_ 2 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNK 81 (122)
T ss_dssp CEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTE
T ss_pred CceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCE
Confidence 5677788899999999999999998888888999872 221 1 0 0 0 0122221 11
Q ss_pred CeEEEccCCCCCCeEEEEEEE
Q psy10160 183 NRLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 183 ~sL~I~~v~~~D~G~Y~C~a~ 203 (558)
.+|+|.+++.+|+|.|.|.+.
T Consensus 82 ~~L~I~~~~~~Dsg~YyCa~~ 102 (122)
T d1nezg_ 82 YVLTLNKFSKENEGYYFCSVI 102 (122)
T ss_dssp EEEEESSCCGGGCEEEEEEEE
T ss_pred eEEEEcccccCCCEEEEeeEe
Confidence 269999999999999999875
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.19 E-value=4.3e-06 Score=66.30 Aligned_cols=76 Identities=21% Similarity=0.406 Sum_probs=51.9
Q ss_pred EEecCCceEeeCCCcEEEEeEeecc-CCCeEEEEE--CCEE---e-c----------cCCceEEEcc---C--CeEEEcc
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGY-PIPQVFWYK--DGQV---I-E----------NDGVHYRITE---S--NRLHINQ 189 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~-P~p~i~W~~--~g~~---l-~----------~~~~~~~~~~---~--~sL~I~~ 189 (558)
+...|....+.+|+.++|.|...+. ..+.+.|++ .+.. + . ....||.... + .+|+|.+
T Consensus 3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (116)
T d1tvda_ 3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP 82 (116)
T ss_dssp EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence 4455677889999999999987543 566799987 1211 1 0 0112444322 1 2699999
Q ss_pred CCCCCCeEEEEEEEeCCc
Q psy10160 190 ANATDSGEYRCVASNSYT 207 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N~~G 207 (558)
++.+|+|.|.|.+....+
T Consensus 83 ~~~~Dsg~YyCa~~~~~~ 100 (116)
T d1tvda_ 83 VRTEDSATYYCAFTLPPP 100 (116)
T ss_dssp CCGGGCEEEEEEEECTTT
T ss_pred ccccccccceeeEecCCC
Confidence 999999999998776543
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.18 E-value=3.4e-06 Score=66.63 Aligned_cols=76 Identities=17% Similarity=0.349 Sum_probs=52.2
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEec------cC-----CceEEE--cc-C--CeEEEccCCCC
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVIE------ND-----GVHYRI--TE-S--NRLHINQANAT 193 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l~------~~-----~~~~~~--~~-~--~sL~I~~v~~~ 193 (558)
+...|....+.+|+.++|+|...+...+.+.|+|. |+... .. ..++.. .. . .+|.|.+++.+
T Consensus 3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 82 (113)
T d2bnqd1 3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG 82 (113)
T ss_dssp EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCC
Confidence 34456778889999999999988877677999982 22110 00 011111 11 1 27999999999
Q ss_pred CCeEEEEEEEeCCc
Q psy10160 194 DSGEYRCVASNSYT 207 (558)
Q Consensus 194 D~G~Y~C~a~N~~G 207 (558)
|+|.|.|.+....+
T Consensus 83 Dsg~YyCa~~~~~~ 96 (113)
T d2bnqd1 83 DSATYLCAVRPTSG 96 (113)
T ss_dssp GCEEEEEEEEESSS
T ss_pred CCcEEeEeEecCCC
Confidence 99999999875543
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.18 E-value=6.4e-06 Score=64.12 Aligned_cols=73 Identities=21% Similarity=0.340 Sum_probs=50.2
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEE---e-cc-------CCceEEEccCC---eEEEccCCCCCCe
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQV---I-EN-------DGVHYRITESN---RLHINQANATDSG 196 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~---l-~~-------~~~~~~~~~~~---sL~I~~v~~~D~G 196 (558)
...|....+.+|+.++|.|.........+.|++. +.. + .. ...++....++ +|.|.+++.+|+|
T Consensus 5 tQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa 84 (108)
T d1jhll_ 5 TQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFA 84 (108)
T ss_dssp EEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCS
T ss_pred EccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccce
Confidence 3456677889999999999988766677999973 111 1 00 01122222222 7999999999999
Q ss_pred EEEEEEEeC
Q psy10160 197 EYRCVASNS 205 (558)
Q Consensus 197 ~Y~C~a~N~ 205 (558)
.|.|.+.+.
T Consensus 85 ~YyCA~~~~ 93 (108)
T d1jhll_ 85 MYICQQHNE 93 (108)
T ss_dssp EEEEEECSS
T ss_pred EEEEeeCCC
Confidence 999976553
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=98.16 E-value=2.3e-06 Score=64.40 Aligned_cols=43 Identities=26% Similarity=0.307 Sum_probs=35.5
Q ss_pred ccCCceEecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEE
Q psy10160 4 VRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVT 46 (558)
Q Consensus 4 ~~~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~ 46 (558)
...+|+...++.|.|.+++.+|+|.|+|.|.|..|... +..|.
T Consensus 44 i~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 87 (89)
T d1biha4 44 LSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 87 (89)
T ss_dssp CCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEE
T ss_pred CccccEEEeeeeEEECCCChhhCEEEEEEEEECCCEEEEEEEEE
Confidence 34567888888999999999999999999999999763 34443
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.12 E-value=5.4e-06 Score=64.55 Aligned_cols=71 Identities=23% Similarity=0.364 Sum_probs=49.2
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEE---ec--------cCCceEEEccC---CeEEEccCCCCCCeE
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQV---IE--------NDGVHYRITES---NRLHINQANATDSGE 197 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~---l~--------~~~~~~~~~~~---~sL~I~~v~~~D~G~ 197 (558)
..|....+.+|++++|.|.....-...+.|++. |.. +. ....++..... ..|.|.+++.+|+|+
T Consensus 6 Q~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~ 85 (107)
T d1mexl1 6 QSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAE 85 (107)
T ss_dssp CCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred cCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheeccee
Confidence 445667789999999999977665567999972 211 11 01124443222 369999999999999
Q ss_pred EEEEEEe
Q psy10160 198 YRCVASN 204 (558)
Q Consensus 198 Y~C~a~N 204 (558)
|.|-+.+
T Consensus 86 YyCa~~~ 92 (107)
T d1mexl1 86 YFCQQYN 92 (107)
T ss_dssp EEEEECS
T ss_pred EEEeECC
Confidence 9997653
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.12 E-value=7.5e-06 Score=63.60 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=50.0
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCCCeEEEEECC--E---Ee-c-------cCCceEEEccC---CeEEEccCCCCCCeE
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG--Q---VI-E-------NDGVHYRITES---NRLHINQANATDSGE 197 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g--~---~l-~-------~~~~~~~~~~~---~sL~I~~v~~~D~G~ 197 (558)
..|....+.+|+.++|.|...+.-...+.|++.. + .+ . ....++....+ ..|.|.+++.+|+|.
T Consensus 5 Q~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~ 84 (106)
T d1op3k1 5 QSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFAT 84 (106)
T ss_dssp EECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSE
T ss_pred CcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCc
Confidence 4467788899999999999877666679999832 1 11 0 01124433322 269999999999999
Q ss_pred EEEEEEe
Q psy10160 198 YRCVASN 204 (558)
Q Consensus 198 Y~C~a~N 204 (558)
|.|.+..
T Consensus 85 YyCa~~~ 91 (106)
T d1op3k1 85 YHCQHYA 91 (106)
T ss_dssp EEEEEEC
T ss_pred EeeeeCC
Confidence 9997664
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.11 E-value=6.9e-06 Score=63.92 Aligned_cols=71 Identities=15% Similarity=0.361 Sum_probs=49.8
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CE---Ee--------ccCCceEEEcc---CCeEEEccCCCCCCeE
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQ---VI--------ENDGVHYRITE---SNRLHINQANATDSGE 197 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~---~l--------~~~~~~~~~~~---~~sL~I~~v~~~D~G~ 197 (558)
..|....+.+|++++|.|.........+.|++. +. .+ .....++.... +.+|.|.+++.+|+|.
T Consensus 6 Q~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~ 85 (107)
T d1d5il1 6 QSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGI 85 (107)
T ss_dssp EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred eeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEE
Confidence 446677889999999999987776777899973 21 11 00112343322 2379999999999999
Q ss_pred EEEEEEe
Q psy10160 198 YRCVASN 204 (558)
Q Consensus 198 Y~C~a~N 204 (558)
|.|....
T Consensus 86 YyCa~~~ 92 (107)
T d1d5il1 86 YYCLQYD 92 (107)
T ss_dssp EEEEECS
T ss_pred EEeeecc
Confidence 9997654
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.11 E-value=4.9e-06 Score=65.90 Aligned_cols=73 Identities=22% Similarity=0.348 Sum_probs=50.5
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEE---e---ccC------CceEEEc--c---CCeEEEccCCCC
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQV---I---END------GVHYRIT--E---SNRLHINQANAT 193 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~---l---~~~------~~~~~~~--~---~~sL~I~~v~~~ 193 (558)
...+....+.+|+.++|+|.......+.+.|++. |+. | ... ..++... . ..+|.|.+++.+
T Consensus 4 tQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 83 (115)
T d1j8hd1 4 TQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMS 83 (115)
T ss_dssp ECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGG
T ss_pred EcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccccc
Confidence 3456677889999999999987766677999972 211 1 000 0122221 1 126999999999
Q ss_pred CCeEEEEEEEeC
Q psy10160 194 DSGEYRCVASNS 205 (558)
Q Consensus 194 D~G~Y~C~a~N~ 205 (558)
|+|.|.|.+...
T Consensus 84 Dsa~YyCa~~~~ 95 (115)
T d1j8hd1 84 DAAEYFCAVSES 95 (115)
T ss_dssp GCEEEEEEEESS
T ss_pred CCccceeeecCC
Confidence 999999998764
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.11 E-value=2.5e-06 Score=64.15 Aligned_cols=43 Identities=28% Similarity=0.370 Sum_probs=36.7
Q ss_pred CCceEecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEE
Q psy10160 6 SENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQ 48 (558)
Q Consensus 6 ~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~ 48 (558)
++++.+.+++|.|.+++.+|+|.|+|.|.|..|... +..|.|+
T Consensus 45 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 88 (89)
T d1cs6a4 45 QNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 88 (89)
T ss_dssp CSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred cceeeeeeeeEEEEeecccCCEEEEEEEEeCCCEEEEEEEEEEE
Confidence 467888899999999999999999999999999864 5566554
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.09 E-value=6.2e-06 Score=65.27 Aligned_cols=73 Identities=19% Similarity=0.324 Sum_probs=49.5
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEE---ec---cCC--------ceEEEccC---CeEEEccCCCC
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQV---IE---NDG--------VHYRITES---NRLHINQANAT 193 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~---l~---~~~--------~~~~~~~~---~sL~I~~v~~~ 193 (558)
..++....+.+|++++|.|.......+.+.|++. +.. +- ... .++..... .+|.|.+++.+
T Consensus 4 ~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 83 (115)
T d1i9ea_ 4 TQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWS 83 (115)
T ss_dssp ECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGG
T ss_pred EcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccc
Confidence 3445667889999999999987766777899972 211 10 010 11111111 37999999999
Q ss_pred CCeEEEEEEEeC
Q psy10160 194 DSGEYRCVASNS 205 (558)
Q Consensus 194 D~G~Y~C~a~N~ 205 (558)
|+|.|.|.+...
T Consensus 84 Dsg~YyCa~~~~ 95 (115)
T d1i9ea_ 84 DSAVYFCAVSGF 95 (115)
T ss_dssp GCEEEEEEEEET
T ss_pred ccceecccccCC
Confidence 999999987643
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.06 E-value=5.3e-06 Score=64.18 Aligned_cols=70 Identities=21% Similarity=0.435 Sum_probs=47.8
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEec-----------cCCceEEEccC---CeEEEccCCCCCCeEEE
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVIE-----------NDGVHYRITES---NRLHINQANATDSGEYR 199 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l~-----------~~~~~~~~~~~---~sL~I~~v~~~D~G~Y~ 199 (558)
|....+.+|+.++|.|.........+.|+|. |.... ....++....+ ..|.|.+++.+|+|.|.
T Consensus 5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy 84 (103)
T d8faba1 5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYY 84 (103)
T ss_dssp CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEE
T ss_pred CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEE
Confidence 3467788999999999987766667999973 21110 00112222211 37999999999999999
Q ss_pred EEEEeC
Q psy10160 200 CVASNS 205 (558)
Q Consensus 200 C~a~N~ 205 (558)
|.+.+.
T Consensus 85 CA~~~~ 90 (103)
T d8faba1 85 CQAWDN 90 (103)
T ss_dssp EEEEET
T ss_pred eeecCC
Confidence 977654
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.05 E-value=7e-06 Score=63.82 Aligned_cols=68 Identities=22% Similarity=0.431 Sum_probs=47.7
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CE---Eec--------cCCceEEEccC---CeEEEccCCCCCCeEEE
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQ---VIE--------NDGVHYRITES---NRLHINQANATDSGEYR 199 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~---~l~--------~~~~~~~~~~~---~sL~I~~v~~~D~G~Y~ 199 (558)
|....+.+|++++|.|...+.....+.|+|. +. .+. ....++....+ ..|.|.+++.+|+|.|.
T Consensus 7 p~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy 86 (106)
T d1lk3l1 7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF 86 (106)
T ss_dssp CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcc
Confidence 4467788999999999998766667999973 21 111 01123433322 37999999999999999
Q ss_pred EEEE
Q psy10160 200 CVAS 203 (558)
Q Consensus 200 C~a~ 203 (558)
|.+.
T Consensus 87 Ca~~ 90 (106)
T d1lk3l1 87 CQQS 90 (106)
T ss_dssp EEEC
T ss_pred cccc
Confidence 9654
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=98.05 E-value=9.1e-06 Score=63.99 Aligned_cols=73 Identities=29% Similarity=0.434 Sum_probs=50.2
Q ss_pred EEecCCceEeeCCCcEEEEeEeecc--CCCeEEEEEC--CEE---eccCCceEEEcc---C--CeEEEccCCCCCCeEEE
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGY--PIPQVFWYKD--GQV---IENDGVHYRITE---S--NRLHINQANATDSGEYR 199 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~--P~p~i~W~~~--g~~---l~~~~~~~~~~~---~--~sL~I~~v~~~D~G~Y~ 199 (558)
+...|....+.+|++++|.|...+. +...+.|++. +.. +.....++.... . .+|+|.+++.+|+|.|.
T Consensus 3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy 82 (113)
T d1vesa_ 3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYK 82 (113)
T ss_dssp EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEe
Confidence 3445677888999999999998754 4456999972 221 111122333222 1 26999999999999999
Q ss_pred EEEEe
Q psy10160 200 CVASN 204 (558)
Q Consensus 200 C~a~N 204 (558)
|.+..
T Consensus 83 Ca~~~ 87 (113)
T d1vesa_ 83 CQAFY 87 (113)
T ss_dssp EEEEE
T ss_pred eeeec
Confidence 98865
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.03 E-value=1e-05 Score=63.16 Aligned_cols=70 Identities=23% Similarity=0.376 Sum_probs=49.1
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CE---Ee-cc-------CCceEEEcc---CCeEEEccCCCCCCeE
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQ---VI-EN-------DGVHYRITE---SNRLHINQANATDSGE 197 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~---~l-~~-------~~~~~~~~~---~~sL~I~~v~~~D~G~ 197 (558)
..|....+.+|+.++|.|.........+.|++. +. .+ .. ...++.... ...|.|.+++.+|+|.
T Consensus 6 QsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~ 85 (109)
T d1mqkl_ 6 QTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGS 85 (109)
T ss_dssp EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred CcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCee
Confidence 446677788999999999987766677999982 21 11 10 012333322 2369999999999999
Q ss_pred EEEEEE
Q psy10160 198 YRCVAS 203 (558)
Q Consensus 198 Y~C~a~ 203 (558)
|.|.+.
T Consensus 86 YyCA~~ 91 (109)
T d1mqkl_ 86 YYCQHH 91 (109)
T ss_dssp EEEEEC
T ss_pred EEEeee
Confidence 999765
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=98.03 E-value=8.2e-06 Score=63.98 Aligned_cols=73 Identities=26% Similarity=0.450 Sum_probs=49.7
Q ss_pred EecCCceEeeCCCcEEEEeEeecc--CCCeEEEEEC--CE---EeccCCceEEEcc---C--CeEEEccCCCCCCeEEEE
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGY--PIPQVFWYKD--GQ---VIENDGVHYRITE---S--NRLHINQANATDSGEYRC 200 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~--P~p~i~W~~~--g~---~l~~~~~~~~~~~---~--~sL~I~~v~~~D~G~Y~C 200 (558)
...|....+.+|+.++|.|...+. +...+.|++. |. .+...+.++.... . .+|+|.+++.+|+|.|.|
T Consensus 3 ~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC 82 (112)
T d1sq2n_ 3 DQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRC 82 (112)
T ss_dssp EEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred EecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeE
Confidence 345667778899999999988653 4567999972 21 1111222333221 1 279999999999999999
Q ss_pred EEEeC
Q psy10160 201 VASNS 205 (558)
Q Consensus 201 ~a~N~ 205 (558)
.+...
T Consensus 83 A~~~~ 87 (112)
T d1sq2n_ 83 GLGVA 87 (112)
T ss_dssp EECBT
T ss_pred EEecC
Confidence 76544
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=7.6e-06 Score=63.61 Aligned_cols=71 Identities=15% Similarity=0.282 Sum_probs=48.6
Q ss_pred eEeeCCCcEEEEeEeeccCC----CeEEEEECCEEecc--CC---------ceEEEcc--CCeEEEccCCCCCCeEEEEE
Q psy10160 139 QVFGVGSDISIPCDVDGYPI----PQVFWYKDGQVIEN--DG---------VHYRITE--SNRLHINQANATDSGEYRCV 201 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~P~----p~i~W~~~g~~l~~--~~---------~~~~~~~--~~sL~I~~v~~~D~G~Y~C~ 201 (558)
.+...|+.++|.|....... -.+.|.+++..+.. .+ .+..... +.+|.|.+++.+|+|.|.|.
T Consensus 4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~ 83 (105)
T d1dr9a1 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV 83 (105)
T ss_dssp EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEE
Confidence 45678999999998754221 24788888765421 11 1223222 34899999999999999999
Q ss_pred EEeCCcee
Q psy10160 202 ASNSYTSD 209 (558)
Q Consensus 202 a~N~~G~~ 209 (558)
+.+..+..
T Consensus 84 V~~~~~~~ 91 (105)
T d1dr9a1 84 VLKYEKDA 91 (105)
T ss_dssp EEECCTTS
T ss_pred EEeCCCCC
Confidence 98765444
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.02 E-value=3.6e-06 Score=65.60 Aligned_cols=71 Identities=17% Similarity=0.268 Sum_probs=49.0
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEe---c--------cCCceEEEcc---CCeEEEccCCCCCCe
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVI---E--------NDGVHYRITE---SNRLHINQANATDSG 196 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l---~--------~~~~~~~~~~---~~sL~I~~v~~~D~G 196 (558)
...|....+.+|++|+|.|.........+.|++. |... - ....++.... ..+|.|.+++.+|+|
T Consensus 5 tQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa 84 (107)
T d3cx5k1 5 TQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIA 84 (107)
T ss_dssp EEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCS
T ss_pred ECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCC
Confidence 3456677889999999999988777767999973 2111 0 0011222111 237999999999999
Q ss_pred EEEEEEE
Q psy10160 197 EYRCVAS 203 (558)
Q Consensus 197 ~Y~C~a~ 203 (558)
.|.|-+.
T Consensus 85 ~YyCa~~ 91 (107)
T d3cx5k1 85 TYFCQHH 91 (107)
T ss_dssp EEEEEEC
T ss_pred cEEeeeC
Confidence 9999654
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=4.7e-06 Score=61.84 Aligned_cols=44 Identities=14% Similarity=0.287 Sum_probs=34.8
Q ss_pred ceEecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCC
Q psy10160 8 NYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALP 51 (558)
Q Consensus 8 r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p 51 (558)
.....+.+|.|.+++.+|+|.|+|.|.|..|... +..|.|...|
T Consensus 39 ~~~~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~~~~ 83 (84)
T d2nxyb2 39 KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 83 (84)
T ss_dssp CEEEESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEECCC
T ss_pred cceeeeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEEecC
Confidence 3445778999999999999999999999999764 5555555443
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.99 E-value=4.6e-06 Score=62.64 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=33.3
Q ss_pred CceEecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEE
Q psy10160 7 ENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTL 47 (558)
Q Consensus 7 ~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V 47 (558)
.+....+++|.|.+++.+|+|.|+|.|.|..|... +..|.|
T Consensus 47 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 88 (89)
T d1gl4b_ 47 SRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 88 (89)
T ss_dssp TTEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred cccEeeceEEEEecCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence 34556788999999999999999999999999764 444443
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=7.2e-06 Score=64.73 Aligned_cols=73 Identities=14% Similarity=0.234 Sum_probs=50.4
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccC-CCeEEEEECC----EE----ecc-----------CCceEEEccC---CeEEEc
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYP-IPQVFWYKDG----QV----IEN-----------DGVHYRITES---NRLHIN 188 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P-~p~i~W~~~g----~~----l~~-----------~~~~~~~~~~---~sL~I~ 188 (558)
+...|...++.+|++|+|.|...+.. ...+.|+|.. .. +.. ...++..... .+|.|.
T Consensus 3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~ 82 (114)
T d1akjd_ 3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLS 82 (114)
T ss_dssp EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEES
T ss_pred eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEc
Confidence 45677888899999999999986643 4568999822 10 100 0123333222 269999
Q ss_pred cCCCCCCeEEEEEEEe
Q psy10160 189 QANATDSGEYRCVASN 204 (558)
Q Consensus 189 ~v~~~D~G~Y~C~a~N 204 (558)
+++.+|+|.|.|.+..
T Consensus 83 ~l~~~Dsg~YyCa~~~ 98 (114)
T d1akjd_ 83 DFRRENEGYYFCSALS 98 (114)
T ss_dssp SCCGGGCEEEEEEEEE
T ss_pred cCCCCCCEEEeEeEcC
Confidence 9999999999998764
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=7.7e-06 Score=63.07 Aligned_cols=39 Identities=31% Similarity=0.355 Sum_probs=33.6
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCCC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALPS 52 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p~ 52 (558)
.+|.|.+++.+|+|.|+|.|.|..|... ++.|.|...|.
T Consensus 56 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P~ 95 (101)
T d2cqva1 56 SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD 95 (101)
T ss_dssp EEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSCS
T ss_pred eEEEEeeCCcccCEEEEEEEEECCCEEEEEEEEEEEecCC
Confidence 4799999999999999999999999875 67777776654
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.97 E-value=1e-05 Score=63.97 Aligned_cols=71 Identities=17% Similarity=0.373 Sum_probs=48.4
Q ss_pred ecCCceEeeCCCcEEEEeEeecc-CCCeEEEEEC-----CEEe------cc----------CCceEEE--cc---CCeEE
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGY-PIPQVFWYKD-----GQVI------EN----------DGVHYRI--TE---SNRLH 186 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~-P~p~i~W~~~-----g~~l------~~----------~~~~~~~--~~---~~sL~ 186 (558)
..|....+.+|++++|.|.+.+. ....+.|++. ++.+ .. ...++.. .. ..+|.
T Consensus 3 Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 82 (115)
T d2atpb1 3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLS 82 (115)
T ss_dssp EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEE
T ss_pred eeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEe
Confidence 34667788999999999998774 4456899973 2211 00 1122222 11 23699
Q ss_pred EccCCCCCCeEEEEEEEe
Q psy10160 187 INQANATDSGEYRCVASN 204 (558)
Q Consensus 187 I~~v~~~D~G~Y~C~a~N 204 (558)
|.+++.+|+|.|.|.+.+
T Consensus 83 I~~~~~~Dsg~Y~Ca~~~ 100 (115)
T d2atpb1 83 IMNVKPEDSDFYFCATVG 100 (115)
T ss_dssp ECSCCGGGCEEEEEEEEC
T ss_pred ecccCCCCCcEEEEeEcC
Confidence 999999999999997653
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.96 E-value=1.7e-05 Score=61.99 Aligned_cols=71 Identities=18% Similarity=0.360 Sum_probs=49.5
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CE---Eec--------cCCceEEEccC---CeEEEccCCCCCCeE
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQ---VIE--------NDGVHYRITES---NRLHINQANATDSGE 197 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~---~l~--------~~~~~~~~~~~---~sL~I~~v~~~D~G~ 197 (558)
..|....+.+|+.++|.|...+.....+.|++. ++ .+- ....++....+ .+|.|.+++.+|+|.
T Consensus 8 QsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~ 87 (109)
T d1bwwa_ 8 QSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIAT 87 (109)
T ss_dssp EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred eeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCce
Confidence 446677889999999999988766667999982 11 110 01123333222 269999999999999
Q ss_pred EEEEEEe
Q psy10160 198 YRCVASN 204 (558)
Q Consensus 198 Y~C~a~N 204 (558)
|.|-+..
T Consensus 88 YyCA~~~ 94 (109)
T d1bwwa_ 88 YYCQQYQ 94 (109)
T ss_dssp EEEEECS
T ss_pred EEEeecC
Confidence 9997654
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=4.3e-06 Score=62.96 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=29.8
Q ss_pred ecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEE
Q psy10160 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTL 47 (558)
Q Consensus 11 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V 47 (558)
..++.|.|.+++.+|+|.|+|.|.|..|... +..|.|
T Consensus 52 ~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l~V 89 (90)
T d1gsma1 52 TGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 89 (90)
T ss_dssp SSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred CceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEEEEE
Confidence 3457899999999999999999999998653 444443
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.95 E-value=5e-06 Score=62.75 Aligned_cols=38 Identities=29% Similarity=0.463 Sum_probs=31.9
Q ss_pred ecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEE
Q psy10160 11 LNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQ 48 (558)
Q Consensus 11 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~ 48 (558)
..+++|.|.+++.+|+|.|+|.|.|..|... ++.|.|.
T Consensus 52 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 90 (91)
T d1cs6a3 52 SSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 90 (91)
T ss_dssp BSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eeeeEEEeCCCCccCCEEEEEEEEECCCEEEEEEEEEEE
Confidence 4678999999999999999999999999864 5555553
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.95 E-value=6.6e-06 Score=63.57 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=36.7
Q ss_pred CCceEecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEe
Q psy10160 6 SENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQA 49 (558)
Q Consensus 6 ~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~ 49 (558)
..+....+++|.|.+++.+|+|.|+|.+.|..|... +..+.|.|
T Consensus 57 ~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~V 101 (102)
T d1f97a1 57 ADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV 101 (102)
T ss_dssp TTTEEEETTEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEE
T ss_pred eeEEEecCCEEEEeECCccCCEEEEEEEEECCCCEEEEEEEEEEE
Confidence 456667788999999999999999999999999864 56666654
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.94 E-value=1.7e-05 Score=62.63 Aligned_cols=76 Identities=21% Similarity=0.367 Sum_probs=49.8
Q ss_pred EEecCCceEeeCCCcEEEEeEeec-cCCCeEEEEEC--CEEec------c-C-------CceEEEccC---CeEEEccCC
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDG-YPIPQVFWYKD--GQVIE------N-D-------GVHYRITES---NRLHINQAN 191 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g-~P~p~i~W~~~--g~~l~------~-~-------~~~~~~~~~---~sL~I~~v~ 191 (558)
+...+....+.+|++|+|.|.... .....+.|++. +.... . . ..++....+ .+|.|.+++
T Consensus 3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 82 (114)
T d2ak4d1 3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ 82 (114)
T ss_dssp EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc
Confidence 345567778999999999998654 34456899982 22110 0 0 011222222 279999999
Q ss_pred CCCCeEEEEEEEeCCc
Q psy10160 192 ATDSGEYRCVASNSYT 207 (558)
Q Consensus 192 ~~D~G~Y~C~a~N~~G 207 (558)
.+|+|.|.|.+....+
T Consensus 83 ~~Dsg~YyCa~~~~~~ 98 (114)
T d2ak4d1 83 VVDSAVYFCALSGFYN 98 (114)
T ss_dssp GGGCEEEEEEEECSBT
T ss_pred cccCCCceEeCCCCCC
Confidence 9999999998776543
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.94 E-value=2e-05 Score=62.49 Aligned_cols=73 Identities=25% Similarity=0.439 Sum_probs=51.2
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEec-------------c---CCceEEEcc-C---CeEEEccC
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVIE-------------N---DGVHYRITE-S---NRLHINQA 190 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l~-------------~---~~~~~~~~~-~---~sL~I~~v 190 (558)
...|....+.+|++++|.|...+...+.+.|+|. |+.+. . ...++.... + ..|.|.++
T Consensus 5 ~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~ 84 (118)
T d2ij0c1 5 SQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSA 84 (118)
T ss_dssp EEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSC
T ss_pred EEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccccc
Confidence 3446667789999999999987776778999982 22110 0 122443322 1 26999999
Q ss_pred CCCCCeEEEEEEEeC
Q psy10160 191 NATDSGEYRCVASNS 205 (558)
Q Consensus 191 ~~~D~G~Y~C~a~N~ 205 (558)
+.+|+|.|.|.+.-.
T Consensus 85 ~~~Dsa~YyCa~~~~ 99 (118)
T d2ij0c1 85 HPEDSGFYVCSALAG 99 (118)
T ss_dssp CGGGCEEEEEEEECS
T ss_pred ccccCceEEEEEecC
Confidence 999999999987643
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=97.93 E-value=2.5e-05 Score=61.03 Aligned_cols=72 Identities=17% Similarity=0.263 Sum_probs=47.5
Q ss_pred ecCCceEeeCCCcEEEEeEeecc-C---CCeEEEEEC--CEEe----cc-------CCceEEEccC---CeEEEccCCCC
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGY-P---IPQVFWYKD--GQVI----EN-------DGVHYRITES---NRLHINQANAT 193 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~-P---~p~i~W~~~--g~~l----~~-------~~~~~~~~~~---~sL~I~~v~~~ 193 (558)
..|....+.+|++|+|.|..++. . ...+.|++. |... .. ...++..... .+|.|.+++.+
T Consensus 6 QsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~ 85 (111)
T d2gsia1 6 QSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEE 85 (111)
T ss_dssp EECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred eeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhccccccccc
Confidence 44667788999999999987642 2 223899983 2111 10 1124433322 36999999999
Q ss_pred CCeEEEEEEEeC
Q psy10160 194 DSGEYRCVASNS 205 (558)
Q Consensus 194 D~G~Y~C~a~N~ 205 (558)
|+|.|.|.+.+.
T Consensus 86 DsA~YyCa~~~~ 97 (111)
T d2gsia1 86 DAATYYCSHIRE 97 (111)
T ss_dssp GCEEEEEEECSS
T ss_pred CCceEEEEECCC
Confidence 999999976543
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=2.8e-05 Score=60.83 Aligned_cols=80 Identities=13% Similarity=0.266 Sum_probs=48.3
Q ss_pred eEeeCCCcEEEEeEeeccCCC---eEE--EEECCEEe-c---------c--C---CceEEE-ccCCeEEEccCCCCCCeE
Q psy10160 139 QVFGVGSDISIPCDVDGYPIP---QVF--WYKDGQVI-E---------N--D---GVHYRI-TESNRLHINQANATDSGE 197 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~P~p---~i~--W~~~g~~l-~---------~--~---~~~~~~-~~~~sL~I~~v~~~D~G~ 197 (558)
..+..|++++|.|.....+.. .+. |.++.... . . + ..+... ..+.+|.|.+++.+|+|.
T Consensus 4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~ 83 (110)
T d1ncna_ 4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL 83 (110)
T ss_dssp EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence 456789999999998654322 233 44433211 0 0 0 011122 234589999999999999
Q ss_pred EEEEEEeCC--cee---eEEEEEEEe
Q psy10160 198 YRCVASNSY--TSD---ENAVTIRVE 218 (558)
Q Consensus 198 Y~C~a~N~~--G~~---~~~~~l~V~ 218 (558)
|.|.+.... |.. ...+.|.|.
T Consensus 84 Y~C~V~~~~~~~~~~~~~~~~~L~V~ 109 (110)
T d1ncna_ 84 YQCIIHHKKPTGMIRIHQMNSELSVL 109 (110)
T ss_dssp EEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred EEEEEEecCCCceEEEEcceEEEEEE
Confidence 999987543 332 345566663
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=97.93 E-value=1.2e-05 Score=62.65 Aligned_cols=71 Identities=20% Similarity=0.341 Sum_probs=47.6
Q ss_pred ecCCceEeeCCCcEEEEeEeecc-CCCeEEEEEC--CE---Eec--------cCCceEEEccC---CeEEEccCCCCCCe
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGY-PIPQVFWYKD--GQ---VIE--------NDGVHYRITES---NRLHINQANATDSG 196 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~-P~p~i~W~~~--g~---~l~--------~~~~~~~~~~~---~sL~I~~v~~~D~G 196 (558)
..|....+.+|++++|.|...+. ....+.|++. +. .+- ....++..... ..|.|.+++.+|+|
T Consensus 6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa 85 (108)
T d2fx7l1 6 QSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFA 85 (108)
T ss_dssp CSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred eeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccE
Confidence 34667778999999999987654 3445899973 22 111 01123332221 26999999999999
Q ss_pred EEEEEEEe
Q psy10160 197 EYRCVASN 204 (558)
Q Consensus 197 ~Y~C~a~N 204 (558)
.|.|.+.+
T Consensus 86 ~YyCa~~~ 93 (108)
T d2fx7l1 86 VYYCQQYG 93 (108)
T ss_dssp EEEEEECS
T ss_pred EEeeecCC
Confidence 99997653
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.93 E-value=1.8e-05 Score=61.95 Aligned_cols=70 Identities=24% Similarity=0.429 Sum_probs=46.9
Q ss_pred CCceEeeCCCcEEEEeEeecc-CCCeEEEEEC--CEEe----c-------cCCceEEEccC---CeEEEccCCCCCCeEE
Q psy10160 136 LETQVFGVGSDISIPCDVDGY-PIPQVFWYKD--GQVI----E-------NDGVHYRITES---NRLHINQANATDSGEY 198 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~-P~p~i~W~~~--g~~l----~-------~~~~~~~~~~~---~sL~I~~v~~~D~G~Y 198 (558)
|....+.+|++++|.|...+. ....+.|++. |... . ....++....+ .+|.|.+++.+|+|.|
T Consensus 5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y 84 (110)
T d2esvd1 5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY 84 (110)
T ss_dssp CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence 446778999999999987653 3456899983 2211 0 00112233222 2699999999999999
Q ss_pred EEEEEeC
Q psy10160 199 RCVASNS 205 (558)
Q Consensus 199 ~C~a~N~ 205 (558)
.|.+...
T Consensus 85 yCa~~~~ 91 (110)
T d2esvd1 85 YCIVVRS 91 (110)
T ss_dssp EEEEEES
T ss_pred EEEEeCC
Confidence 9987643
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=2.1e-05 Score=61.36 Aligned_cols=70 Identities=16% Similarity=0.285 Sum_probs=45.2
Q ss_pred ceEeeCCCcEEEEeEeecc--CCCeEEEEECC--EE---e-c-------cCCceEEEcc---CC--eEEEccCCCCCCeE
Q psy10160 138 TQVFGVGSDISIPCDVDGY--PIPQVFWYKDG--QV---I-E-------NDGVHYRITE---SN--RLHINQANATDSGE 197 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~--P~p~i~W~~~g--~~---l-~-------~~~~~~~~~~---~~--sL~I~~v~~~D~G~ 197 (558)
...+.+|+.++|.|..... ....+.|+|.. .. + . ....++.+.. ++ +|.|.+++.+|+|.
T Consensus 5 ~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~ 84 (108)
T d1hkfa_ 5 VLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGH 84 (108)
T ss_dssp EEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred EEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEE
Confidence 4556899999999986543 23457898732 11 1 0 0012333221 22 69999999999999
Q ss_pred EEEEEEeCCc
Q psy10160 198 YRCVASNSYT 207 (558)
Q Consensus 198 Y~C~a~N~~G 207 (558)
|.|.+.....
T Consensus 85 Y~C~v~~~~~ 94 (108)
T d1hkfa_ 85 YWCRIYRPSD 94 (108)
T ss_dssp EEEEEECTTT
T ss_pred EEEEEecCCC
Confidence 9998875543
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.93 E-value=3.8e-05 Score=60.44 Aligned_cols=73 Identities=19% Similarity=0.468 Sum_probs=48.5
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEe------ccC-------CceEEEccC---CeEEEccCCCCCC
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVI------END-------GVHYRITES---NRLHINQANATDS 195 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l------~~~-------~~~~~~~~~---~sL~I~~v~~~D~ 195 (558)
..|....+.+|++++|.|...+. ...+.|++. |..+ ... ..++..... .+|.|.+++.+|+
T Consensus 5 Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds 83 (115)
T d1ogad1 5 QSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDT 83 (115)
T ss_dssp EECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGC
T ss_pred eCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccce
Confidence 34567788999999999997764 346999982 2110 000 111222221 2799999999999
Q ss_pred eEEEEEEEeCCc
Q psy10160 196 GEYRCVASNSYT 207 (558)
Q Consensus 196 G~Y~C~a~N~~G 207 (558)
|.|.|-+....+
T Consensus 84 a~YyCa~~~~~~ 95 (115)
T d1ogad1 84 GLYLCAGAGSQG 95 (115)
T ss_dssp EEEEEEEECTTS
T ss_pred eeEcccccCCCC
Confidence 999998775433
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.92 E-value=1.5e-05 Score=62.45 Aligned_cols=71 Identities=21% Similarity=0.376 Sum_probs=47.6
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEec------cCC-----ceEEE--cc---CCeEEEccCCCCCC
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVIE------NDG-----VHYRI--TE---SNRLHINQANATDS 195 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l~------~~~-----~~~~~--~~---~~sL~I~~v~~~D~ 195 (558)
..|....+.+|+.++|.|.........+.|++. |.... ... .++.. .. ..+|.|.+++.+|+
T Consensus 4 Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds 83 (110)
T d1u3ha1 4 QSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDS 83 (110)
T ss_dssp CSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSC
T ss_pred ecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCc
Confidence 346678889999999999987655556999973 21110 000 01111 11 12699999999999
Q ss_pred eEEEEEEEe
Q psy10160 196 GEYRCVASN 204 (558)
Q Consensus 196 G~Y~C~a~N 204 (558)
|.|.|.+.-
T Consensus 84 a~YyCa~~~ 92 (110)
T d1u3ha1 84 ATYFCAASA 92 (110)
T ss_dssp SEEEECCEE
T ss_pred eeEeeeecC
Confidence 999998763
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=1e-05 Score=62.28 Aligned_cols=43 Identities=16% Similarity=0.121 Sum_probs=35.8
Q ss_pred CceEecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEe
Q psy10160 7 ENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQA 49 (558)
Q Consensus 7 ~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~ 49 (558)
.++...+++|.|.+++.+|+|.|+|.+.|..|... ++.|.|..
T Consensus 52 ~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L~V~~ 95 (101)
T d1iray1 52 SRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVE 95 (101)
T ss_dssp SSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred eEEeccCCEEEeccceecCCEEEEEEEECCCCeEEEEEEEEEEe
Confidence 45666789999999999999999999999999874 56666653
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=1.9e-05 Score=59.89 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=52.0
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeC
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
.|.+...|.. .|..|++|+|.|.....+.-.+.|+|+|...... ...-.......|.+++.+|+|+|.|.....
T Consensus 5 kP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~--~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~ 78 (96)
T d1ucta2 5 KPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--HQSGEHPANFSLGPVDLNVSGIYRCYGWYN 78 (96)
T ss_dssp CCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--EEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred CCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceE--EcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence 4566666654 6889999999998643344468899998543321 111112346899999999999999987654
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.91 E-value=2.5e-05 Score=61.21 Aligned_cols=72 Identities=19% Similarity=0.288 Sum_probs=49.4
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEec------cC-----CceEEEc--c---CCeEEEccCCCCC
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVIE------ND-----GVHYRIT--E---SNRLHINQANATD 194 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l~------~~-----~~~~~~~--~---~~sL~I~~v~~~D 194 (558)
...|....+.+|+.++|.|...+...+.+.|++. |+... .. ..++... . ..+|.|.+++.+|
T Consensus 4 ~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 83 (111)
T d1bd2d1 4 KQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGD 83 (111)
T ss_dssp ECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred EccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccc
Confidence 3446667789999999999988777777999982 21110 00 0122221 1 1279999999999
Q ss_pred CeEEEEEEEe
Q psy10160 195 SGEYRCVASN 204 (558)
Q Consensus 195 ~G~Y~C~a~N 204 (558)
+|.|.|.+..
T Consensus 84 sa~YyCa~~~ 93 (111)
T d1bd2d1 84 SAVYFCAAME 93 (111)
T ss_dssp CEEEEEEEES
T ss_pred cEEEEeeccC
Confidence 9999997763
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=97.88 E-value=2.3e-05 Score=61.34 Aligned_cols=72 Identities=22% Similarity=0.374 Sum_probs=47.2
Q ss_pred ecCCceEeeCCCcEEEEeEeecc----CCCeEEEEEC--CEEe----cc-------CCceEEEccC---CeEEEccCCCC
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGY----PIPQVFWYKD--GQVI----EN-------DGVHYRITES---NRLHINQANAT 193 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~----P~p~i~W~~~--g~~l----~~-------~~~~~~~~~~---~sL~I~~v~~~ 193 (558)
..|....+.+|+.++|.|..... ....+.|++. |... .. ...++....+ .+|.|.+++.+
T Consensus 6 QsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 85 (111)
T d1j05a_ 6 QSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEAD 85 (111)
T ss_dssp EECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGG
T ss_pred ccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccc
Confidence 34667778899999999987432 2234899973 3211 00 1123333332 27999999999
Q ss_pred CCeEEEEEEEeC
Q psy10160 194 DSGEYRCVASNS 205 (558)
Q Consensus 194 D~G~Y~C~a~N~ 205 (558)
|+|.|.|.+.+.
T Consensus 86 Dsa~YyCa~~~~ 97 (111)
T d1j05a_ 86 DVATYYCQQTNE 97 (111)
T ss_dssp GCEEEEEEECSS
T ss_pred cCccEEEeecCC
Confidence 999999976543
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.88 E-value=3e-05 Score=60.36 Aligned_cols=68 Identities=13% Similarity=0.268 Sum_probs=45.8
Q ss_pred CceEeeCCCcEEEEeEeeccCCC---eEEEEEC--CEEec-----------cCCceEEEcc---CCeEEEccCCCCCCeE
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIP---QVFWYKD--GQVIE-----------NDGVHYRITE---SNRLHINQANATDSGE 197 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p---~i~W~~~--g~~l~-----------~~~~~~~~~~---~~sL~I~~v~~~D~G~ 197 (558)
....+.+|++++|.|...+.... .+.|++. |+... ....++.... +..|.|.+++.+|+|.
T Consensus 8 ~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~ 87 (110)
T d1oaql_ 8 SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAI 87 (110)
T ss_dssp SEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEE
T ss_pred CCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEe
Confidence 35678899999999998754332 2889972 22111 0112343322 2379999999999999
Q ss_pred EEEEEEe
Q psy10160 198 YRCVASN 204 (558)
Q Consensus 198 Y~C~a~N 204 (558)
|.|.+..
T Consensus 88 YyCa~~~ 94 (110)
T d1oaql_ 88 YFCALWY 94 (110)
T ss_dssp EEEEEEE
T ss_pred EEEEccc
Confidence 9998765
|
| >d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.87 E-value=3.4e-05 Score=59.55 Aligned_cols=69 Identities=16% Similarity=0.357 Sum_probs=45.6
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCCCeEEEEECC--EE---ec--------cCCceEEEcc---CCeEEEccCCCCCCeE
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG--QV---IE--------NDGVHYRITE---SNRLHINQANATDSGE 197 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g--~~---l~--------~~~~~~~~~~---~~sL~I~~v~~~D~G~ 197 (558)
..|....+.+|++++|.|.... ....+.|++.. .. +. ....++.... +.+|.|.+++.+|+|.
T Consensus 5 QsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~ 83 (104)
T d1yqvl1 5 QSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAAT 83 (104)
T ss_dssp EESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred CcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCe
Confidence 4566777899999999998654 34458999732 10 00 0011222221 1379999999999999
Q ss_pred EEEEEE
Q psy10160 198 YRCVAS 203 (558)
Q Consensus 198 Y~C~a~ 203 (558)
|.|.+.
T Consensus 84 YyCa~~ 89 (104)
T d1yqvl1 84 YYCQQW 89 (104)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 999654
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=97.87 E-value=2.7e-05 Score=61.05 Aligned_cols=68 Identities=21% Similarity=0.388 Sum_probs=46.7
Q ss_pred CceEeeCCCcEEEEeEeeccC--CCeEEEEECC--EE---ec--------cCCceEEEcc---CCeEEEccCCCCCCeEE
Q psy10160 137 ETQVFGVGSDISIPCDVDGYP--IPQVFWYKDG--QV---IE--------NDGVHYRITE---SNRLHINQANATDSGEY 198 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~g--~~---l~--------~~~~~~~~~~---~~sL~I~~v~~~D~G~Y 198 (558)
....+.+|++++|.|.+.+.- ...+.|++.. .. +- ....++.... ..+|.|.+++.+|++.|
T Consensus 8 ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Y 87 (114)
T d2rhea_ 8 PSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADY 87 (114)
T ss_dssp SEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred CcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceE
Confidence 357788999999999987653 4569999842 11 10 0011333222 23799999999999999
Q ss_pred EEEEEe
Q psy10160 199 RCVASN 204 (558)
Q Consensus 199 ~C~a~N 204 (558)
.|.+..
T Consensus 88 yCA~~~ 93 (114)
T d2rhea_ 88 YCAAWN 93 (114)
T ss_dssp EEEEEE
T ss_pred EEeecC
Confidence 998764
|
| >d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
Probab=97.86 E-value=2.9e-05 Score=60.96 Aligned_cols=70 Identities=20% Similarity=0.339 Sum_probs=45.9
Q ss_pred ecCCceEeeCCCcEEEEeEeecc------CCCeEEEEEC--CEEec-----------cCCceEEEccC---CeEEEccCC
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGY------PIPQVFWYKD--GQVIE-----------NDGVHYRITES---NRLHINQAN 191 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~------P~p~i~W~~~--g~~l~-----------~~~~~~~~~~~---~sL~I~~v~ 191 (558)
..|....+.+|++++|.|...+. ....+.|++. |.... ....++....+ .+|.|.+++
T Consensus 6 Q~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~ 85 (113)
T d1q9ra1 6 QSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQ 85 (113)
T ss_dssp EECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC
T ss_pred ccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccc
Confidence 34667788999999999987642 1234899983 21110 01122322221 269999999
Q ss_pred CCCCeEEEEEEE
Q psy10160 192 ATDSGEYRCVAS 203 (558)
Q Consensus 192 ~~D~G~Y~C~a~ 203 (558)
.+|+|.|.|-+.
T Consensus 86 ~~Dsa~YyCA~~ 97 (113)
T d1q9ra1 86 AEDLAVYYCKQS 97 (113)
T ss_dssp GGGCEEEEEEEC
T ss_pred cCCCeEEEeccc
Confidence 999999999754
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.86 E-value=1.1e-05 Score=61.67 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=31.1
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQA 49 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~ 49 (558)
++|.|.+++.+|+|.|+|.|.|..|...+.++.|.+
T Consensus 60 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~tv~l~V 95 (97)
T d1epfa1 60 STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 95 (97)
T ss_dssp EEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEE
T ss_pred eEEEcccCchhhceEEEEEEEeCCCcEEEEEEEEEE
Confidence 589999999999999999999999987666666655
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.85 E-value=3.7e-05 Score=60.09 Aligned_cols=71 Identities=23% Similarity=0.299 Sum_probs=46.6
Q ss_pred ecCCceEeeCCCcEEEEeEeeccC-----CCeEEEEEC--CEEec-----------cCCceEEEccC---CeEEEccCCC
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYP-----IPQVFWYKD--GQVIE-----------NDGVHYRITES---NRLHINQANA 192 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P-----~p~i~W~~~--g~~l~-----------~~~~~~~~~~~---~sL~I~~v~~ 192 (558)
..|....+.+|++|+|.|...+.. ...+.|++. |.... ....++..... ..|.|.+++.
T Consensus 6 QsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~ 85 (112)
T d1ncwl1 6 QSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEA 85 (112)
T ss_dssp EECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred CcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcccc
Confidence 346677889999999999876533 234889973 21110 01123332221 2699999999
Q ss_pred CCCeEEEEEEEe
Q psy10160 193 TDSGEYRCVASN 204 (558)
Q Consensus 193 ~D~G~Y~C~a~N 204 (558)
+|+|.|.|...+
T Consensus 86 eDsAvYYC~~~~ 97 (112)
T d1ncwl1 86 EDLGVYYCWQGT 97 (112)
T ss_dssp GGCEEEEEEECS
T ss_pred CcCEeEEEEcCC
Confidence 999999995543
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=97.83 E-value=8.3e-06 Score=61.91 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=31.5
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~ 48 (558)
.+++|.|.+++.+|+|.|+|.|.|..|...+..+.|+
T Consensus 56 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~s~~v~l~ 92 (94)
T d1biha1 56 DEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFR 92 (94)
T ss_dssp TSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred cceEEEEeccChhcCeEEEEEEEeCCCEEEEEEEEEE
Confidence 5679999999999999999999999998765555554
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=4.8e-06 Score=64.75 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=34.9
Q ss_pred CCceEecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEE
Q psy10160 6 SENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQ 48 (558)
Q Consensus 6 ~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~ 48 (558)
..+....+++|.|.+++.+|+|.|+|.|.|..|... +..++|.
T Consensus 60 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~G~~~~~~~v~v~ 103 (105)
T d1nbqa1 60 EDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103 (105)
T ss_dssp TTTCEEETTEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECC
T ss_pred cceeeecCceEEEecccccceeeEEEEEEECCCCEEEEEEEEEE
Confidence 345666778999999999999999999999999875 4455543
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=97.83 E-value=1.6e-05 Score=61.85 Aligned_cols=70 Identities=23% Similarity=0.415 Sum_probs=47.5
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEE---ec-c-------CCceEEEccC---CeEEEccCCCCCCeEEE
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQV---IE-N-------DGVHYRITES---NRLHINQANATDSGEYR 199 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~---l~-~-------~~~~~~~~~~---~sL~I~~v~~~D~G~Y~ 199 (558)
|....+.+|++++|.|.........+.|++. +.. +- . ...++..... .+|.|.+++.+|+|.|.
T Consensus 7 p~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYy 86 (109)
T d1w72l1 7 PPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYY 86 (109)
T ss_dssp CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEE
Confidence 3457788999999999976655567999973 211 10 0 0112222221 27999999999999999
Q ss_pred EEEEeC
Q psy10160 200 CVASNS 205 (558)
Q Consensus 200 C~a~N~ 205 (558)
|.+...
T Consensus 87 CA~~~~ 92 (109)
T d1w72l1 87 CQVWDS 92 (109)
T ss_dssp EEEEET
T ss_pred EEecCC
Confidence 987654
|
| >d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.82 E-value=2.9e-05 Score=60.77 Aligned_cols=71 Identities=20% Similarity=0.329 Sum_probs=47.5
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEEec-----------cCCceEEEcc---C--CeEEEccCCCCC
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQVIE-----------NDGVHYRITE---S--NRLHINQANATD 194 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~l~-----------~~~~~~~~~~---~--~sL~I~~v~~~D 194 (558)
.|....+.+|++++|.|...+.... -+.|+|. ++... ....++.... + ..|.|.+++.+|
T Consensus 6 QP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~D 85 (111)
T d1cd0a_ 6 QPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTED 85 (111)
T ss_dssp CCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred cCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCccc
Confidence 3556778999999999998765433 3899973 22110 0112333221 1 279999999999
Q ss_pred CeEEEEEEEeC
Q psy10160 195 SGEYRCVASNS 205 (558)
Q Consensus 195 ~G~Y~C~a~N~ 205 (558)
+|.|.|...+.
T Consensus 86 sa~YyCA~~~~ 96 (111)
T d1cd0a_ 86 EADYYCQSYDA 96 (111)
T ss_dssp CEEEEEEEEET
T ss_pred CcEEEEeeccC
Confidence 99999987654
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.82 E-value=4e-05 Score=59.96 Aligned_cols=69 Identities=23% Similarity=0.389 Sum_probs=45.8
Q ss_pred ecCCceEeeCCCcEEEEeEeeccC-----CCeEEEEEC--CEE----ecc-------CCceEEEccC---CeEEEccCCC
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYP-----IPQVFWYKD--GQV----IEN-------DGVHYRITES---NRLHINQANA 192 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P-----~p~i~W~~~--g~~----l~~-------~~~~~~~~~~---~sL~I~~v~~ 192 (558)
..|....+.+|++|+|.|..++.. ...+.|++. |.. +.. ...++..... .+|.|.+++.
T Consensus 6 Q~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~ 85 (112)
T d1mjul1 6 QAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEA 85 (112)
T ss_dssp CCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCG
T ss_pred ecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccc
Confidence 345667788999999999986632 345899873 211 110 0113333222 2699999999
Q ss_pred CCCeEEEEEE
Q psy10160 193 TDSGEYRCVA 202 (558)
Q Consensus 193 ~D~G~Y~C~a 202 (558)
+|+|.|.|..
T Consensus 86 ~DsAvYyCa~ 95 (112)
T d1mjul1 86 EDVGVYYCLQ 95 (112)
T ss_dssp GGCEEEEEEE
T ss_pred cCCceEEEEe
Confidence 9999999953
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=2.4e-05 Score=62.36 Aligned_cols=71 Identities=17% Similarity=0.310 Sum_probs=46.7
Q ss_pred CCceEeeCCCcEEEEeEeeccC----C---CeEEEEECCEEec--------cC--------CceEEEcc-----CCeEEE
Q psy10160 136 LETQVFGVGSDISIPCDVDGYP----I---PQVFWYKDGQVIE--------ND--------GVHYRITE-----SNRLHI 187 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P----~---p~i~W~~~g~~l~--------~~--------~~~~~~~~-----~~sL~I 187 (558)
+..+++.+|+.|.|.|.....+ . ..+.|++....-. .+ ..|+.+.. +.+|.|
T Consensus 8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 87 (121)
T d2g5ra1 8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI 87 (121)
T ss_dssp CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence 4567789999999999975321 1 2377988532110 00 12444433 237999
Q ss_pred ccCCCCCCeEEEEEEEeCC
Q psy10160 188 NQANATDSGEYRCVASNSY 206 (558)
Q Consensus 188 ~~v~~~D~G~Y~C~a~N~~ 206 (558)
.+++.+|+|.|.|.+....
T Consensus 88 ~~v~~~DsG~Y~C~v~~~~ 106 (121)
T d2g5ra1 88 RDARMSDAGRYFFRMEKGN 106 (121)
T ss_dssp CSCCGGGCEEEEEEEEETT
T ss_pred CCCChHHCEEEEEEEEeCC
Confidence 9999999999999997643
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=1.6e-05 Score=61.21 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=31.5
Q ss_pred cccCCceEecCCeEEEcCCCCCCCEEEEEEEEeCCcce
Q psy10160 3 QVRSENYELNKNMLTIKRVEPERLGAYTCQAYNGLGRA 40 (558)
Q Consensus 3 p~~~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 40 (558)
+....++...++.|.|.+++.+|+|.|+|.|.|..|..
T Consensus 47 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~ 84 (103)
T d1iray2 47 LLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGK 84 (103)
T ss_dssp CCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred cCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCCE
Confidence 34455677788999999999999999999999977543
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=1.3e-05 Score=63.20 Aligned_cols=68 Identities=19% Similarity=0.351 Sum_probs=45.2
Q ss_pred ceEeeCCCcEEEEeEeecc--CCCeEEEEEC--CEE---ec-c-------C---CceEEEcc---CC--eEEEccCCCCC
Q psy10160 138 TQVFGVGSDISIPCDVDGY--PIPQVFWYKD--GQV---IE-N-------D---GVHYRITE---SN--RLHINQANATD 194 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~--P~p~i~W~~~--g~~---l~-~-------~---~~~~~~~~---~~--sL~I~~v~~~D 194 (558)
...+.+|++++|.|...+. ....+.|+|. +.. +. . . ..|+.+.. .+ +|.|.+++.+|
T Consensus 8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D 87 (113)
T d1smoa_ 8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED 87 (113)
T ss_dssp EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence 4567899999999997643 4456889973 211 10 0 0 02444332 22 59999999999
Q ss_pred CeEEEEEEEeC
Q psy10160 195 SGEYRCVASNS 205 (558)
Q Consensus 195 ~G~Y~C~a~N~ 205 (558)
+|.|.|.+...
T Consensus 88 sg~Y~Cav~~~ 98 (113)
T d1smoa_ 88 SGLYQCVIYQP 98 (113)
T ss_dssp CEEEEEEECCT
T ss_pred CceEEEEEECC
Confidence 99999987543
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.80 E-value=1.9e-05 Score=62.36 Aligned_cols=74 Identities=22% Similarity=0.331 Sum_probs=48.9
Q ss_pred EecCCceEeeCCCcEEEEeEeec-cCCCeEEEEEC--CEEec--------cC----CceEEEcc---C--CeEEEccCCC
Q psy10160 133 NITLETQVFGVGSDISIPCDVDG-YPIPQVFWYKD--GQVIE--------ND----GVHYRITE---S--NRLHINQANA 192 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g-~P~p~i~W~~~--g~~l~--------~~----~~~~~~~~---~--~sL~I~~v~~ 192 (558)
...+....+.+|++|+|.|.... .....+.|+|. +.... .. ..++.... + .+|.|.+++.
T Consensus 3 tQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 82 (115)
T d1fo0a_ 3 TQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI 82 (115)
T ss_dssp ECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred EccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCc
Confidence 34566778999999999998653 44556899982 21110 00 01232221 1 2699999999
Q ss_pred CCCeEEEEEEEeCC
Q psy10160 193 TDSGEYRCVASNSY 206 (558)
Q Consensus 193 ~D~G~Y~C~a~N~~ 206 (558)
+|+|.|.|.+....
T Consensus 83 ~Dsa~YyCa~~~~~ 96 (115)
T d1fo0a_ 83 EDSAVYFCAMRGDY 96 (115)
T ss_dssp GGCEEEEEEEECCC
T ss_pred cccccccceeecCC
Confidence 99999999876543
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.80 E-value=4.8e-05 Score=59.67 Aligned_cols=74 Identities=23% Similarity=0.423 Sum_probs=48.4
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEe----c-cC-----Cc-eEEEc--c--CCeEEEccCCCCCC
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVI----E-ND-----GV-HYRIT--E--SNRLHINQANATDS 195 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l----~-~~-----~~-~~~~~--~--~~sL~I~~v~~~D~ 195 (558)
...|....+.+|+.++|.|...+. ...+.|++. +... . .+ +. +.... . ..+|.|.+++.+|+
T Consensus 5 ~Q~P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds 83 (113)
T d1h5ba_ 5 EQSPSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDS 83 (113)
T ss_dssp EEECSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGC
T ss_pred EECCCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHC
Confidence 345667788999999999997653 456999982 2111 0 00 00 00111 1 12699999999999
Q ss_pred eEEEEEEEeCCc
Q psy10160 196 GEYRCVASNSYT 207 (558)
Q Consensus 196 G~Y~C~a~N~~G 207 (558)
|.|.|.+....+
T Consensus 84 a~YyCa~~~~~~ 95 (113)
T d1h5ba_ 84 GTYFCAAEASSG 95 (113)
T ss_dssp EEEEEEEECSSS
T ss_pred EEEEEEecCCCC
Confidence 999998875443
|
| >d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD80, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=9.3e-05 Score=55.84 Aligned_cols=67 Identities=18% Similarity=0.418 Sum_probs=45.8
Q ss_pred CCCcEEEEeEeec-cCCCeEEEEECCEEeccCCceEEEc-cCC------eEEEccCCCCCCeEEEEEEEeCCceeeEE
Q psy10160 143 VGSDISIPCDVDG-YPIPQVFWYKDGQVIENDGVHYRIT-ESN------RLHINQANATDSGEYRCVASNSYTSDENA 212 (558)
Q Consensus 143 ~G~~v~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~-~~~------sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 212 (558)
.|+.+.|.|.+.| +|.|.|.|+++|..+.......... .++ .|.+. ..+...|+|.+....-.....
T Consensus 15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~~~~ 89 (95)
T d1dr9a2 15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRVNQT 89 (95)
T ss_dssp STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCEEEE
T ss_pred CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCCcEE
Confidence 5778999999988 6999999999998886533222111 123 35443 446679999998876554433
|
| >d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.79 E-value=6.3e-05 Score=58.64 Aligned_cols=74 Identities=24% Similarity=0.405 Sum_probs=50.2
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEec------cC-----CceEEEcc-----CCeEEEccCCCC
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVIE------ND-----GVHYRITE-----SNRLHINQANAT 193 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l~------~~-----~~~~~~~~-----~~sL~I~~v~~~ 193 (558)
+...+....+.+|+.++|.|.........+.|+|. |+.+. .. ..++.... ...|.|.+++.+
T Consensus 3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~ 82 (110)
T d1ac6a_ 3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES 82 (110)
T ss_dssp EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG
T ss_pred eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC
Confidence 34456677889999999999877655567999982 21110 00 11232211 136999999999
Q ss_pred CCeEEEEEEEeC
Q psy10160 194 DSGEYRCVASNS 205 (558)
Q Consensus 194 D~G~Y~C~a~N~ 205 (558)
|+|.|.|.+...
T Consensus 83 Dsa~YyCA~~~~ 94 (110)
T d1ac6a_ 83 DSAVYYCALSGG 94 (110)
T ss_dssp GCEEEEEEEEET
T ss_pred CCcccceeecCC
Confidence 999999987654
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.79 E-value=6.3e-05 Score=58.69 Aligned_cols=71 Identities=17% Similarity=0.409 Sum_probs=47.6
Q ss_pred EecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEe----c--cC--------CceEEE----ccCCeEEEccCCC
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVI----E--ND--------GVHYRI----TESNRLHINQANA 192 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l----~--~~--------~~~~~~----~~~~sL~I~~v~~ 192 (558)
...|....+.+|++++|.|...+ ..+.+.|+|. |+.. . .. ..++.. ..+.+|.|.+++.
T Consensus 5 ~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 83 (110)
T d2aq2a1 5 TQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATP 83 (110)
T ss_dssp EEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCG
T ss_pred EEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCH
Confidence 34566778899999999998765 3567999982 2111 0 00 011111 1123699999999
Q ss_pred CCCeEEEEEEEe
Q psy10160 193 TDSGEYRCVASN 204 (558)
Q Consensus 193 ~D~G~Y~C~a~N 204 (558)
+|+|.|.|-+..
T Consensus 84 ~Dsa~YyCa~~~ 95 (110)
T d2aq2a1 84 SQTSVYFCASGG 95 (110)
T ss_dssp GGCEEEEEEEEE
T ss_pred hhCEEEEEeeCC
Confidence 999999998764
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.79 E-value=5.1e-05 Score=59.44 Aligned_cols=72 Identities=24% Similarity=0.333 Sum_probs=47.9
Q ss_pred EecCCceEeeCCCcEEEEeEeecc-----CCCeEEEEEC--CEE---e--------ccCCceEEEccC---CeEEEccCC
Q psy10160 133 NITLETQVFGVGSDISIPCDVDGY-----PIPQVFWYKD--GQV---I--------ENDGVHYRITES---NRLHINQAN 191 (558)
Q Consensus 133 ~~~~~~~~v~~G~~v~L~C~~~g~-----P~p~i~W~~~--g~~---l--------~~~~~~~~~~~~---~sL~I~~v~ 191 (558)
...|....+.+|+.|+|.|..++. ....+.|++. |.. + .....++..... .+|.|.+++
T Consensus 6 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~ 85 (113)
T d1n4xl_ 6 TQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVE 85 (113)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCC
T ss_pred eCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCC
Confidence 344667788999999999997643 2245899973 211 1 011123433322 279999999
Q ss_pred CCCCeEEEEEEEe
Q psy10160 192 ATDSGEYRCVASN 204 (558)
Q Consensus 192 ~~D~G~Y~C~a~N 204 (558)
.+|+|.|.|...+
T Consensus 86 ~~DsavYyCa~~~ 98 (113)
T d1n4xl_ 86 AEDLGIYYCFQGS 98 (113)
T ss_dssp GGGCEEEEEEECS
T ss_pred cccCEEEEEEECC
Confidence 9999999996544
|
| >d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.78 E-value=6.9e-05 Score=58.85 Aligned_cols=70 Identities=19% Similarity=0.416 Sum_probs=46.7
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEec------cC--------CceEEEcc----CCeEEEccCCCCC
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVIE------ND--------GVHYRITE----SNRLHINQANATD 194 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l~------~~--------~~~~~~~~----~~sL~I~~v~~~D 194 (558)
.|....+.+|++++|.|.... ....+.|++. ++.+. .. ..++.... ..+|.|.+++.+|
T Consensus 5 sP~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 83 (114)
T d1ogae1 5 SPKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNP 83 (114)
T ss_dssp SCSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCC
T ss_pred cCCeEEEcCCCCEEEEEEEec-CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCC
Confidence 456678899999999999753 4567999973 21110 00 01121111 2369999999999
Q ss_pred CeEEEEEEEeC
Q psy10160 195 SGEYRCVASNS 205 (558)
Q Consensus 195 ~G~Y~C~a~N~ 205 (558)
+|.|.|.+...
T Consensus 84 Sa~YyCa~~~~ 94 (114)
T d1ogae1 84 TAFYLCASSSR 94 (114)
T ss_dssp CEEEEEEEESS
T ss_pred ceeEEEeeccC
Confidence 99999976643
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=1.2e-05 Score=60.70 Aligned_cols=34 Identities=18% Similarity=0.365 Sum_probs=28.8
Q ss_pred CceE-ecCCeEEEcCCCCCCCEEEEEEEEeCCcce
Q psy10160 7 ENYE-LNKNMLTIKRVEPERLGAYTCQAYNGLGRA 40 (558)
Q Consensus 7 ~r~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 40 (558)
.++. ..+++|.|.+++.+|+|.|+|.|.|..|..
T Consensus 42 ~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~ 76 (92)
T d1olza1 42 PKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNK 76 (92)
T ss_dssp SSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSS
T ss_pred eeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCE
Confidence 3444 467899999999999999999999988765
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=97.77 E-value=2.8e-05 Score=60.84 Aligned_cols=70 Identities=21% Similarity=0.358 Sum_probs=46.8
Q ss_pred CCceEeeCCCcEEEEeEeeccC--CCeEEEEEC--CEE---ec--------cCCceEEEccC---CeEEEccCCCCCCeE
Q psy10160 136 LETQVFGVGSDISIPCDVDGYP--IPQVFWYKD--GQV---IE--------NDGVHYRITES---NRLHINQANATDSGE 197 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~--g~~---l~--------~~~~~~~~~~~---~sL~I~~v~~~D~G~ 197 (558)
|....+.+|++++|.|..++.- ...+.|++. +.. +. ....++....+ .+|.|.+++.+|+|.
T Consensus 7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~ 86 (111)
T d1rzfl1 7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEAD 86 (111)
T ss_dssp CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcc
Confidence 4467789999999999876543 345999973 111 10 00123332221 379999999999999
Q ss_pred EEEEEEeC
Q psy10160 198 YRCVASNS 205 (558)
Q Consensus 198 Y~C~a~N~ 205 (558)
|.|.+...
T Consensus 87 YyCA~~~~ 94 (111)
T d1rzfl1 87 YYCGTWDS 94 (111)
T ss_dssp EEEEEEET
T ss_pred eEEeecCC
Confidence 99987643
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=97.77 E-value=1.2e-05 Score=61.43 Aligned_cols=38 Identities=32% Similarity=0.575 Sum_probs=30.9
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEe
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQA 49 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~ 49 (558)
.+.+|.|.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus 59 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~L~V 96 (97)
T d1biha3 59 SGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 96 (97)
T ss_dssp TTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEE
T ss_pred CCCEEEEEeccccccEEEEEEEEECCCcEEEEEEEEEE
Confidence 34689999999999999999999999987554444443
|
| >d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.76 E-value=5.9e-05 Score=59.78 Aligned_cols=74 Identities=18% Similarity=0.341 Sum_probs=50.0
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccC--CCeEEEEEC--CEEe---c--------cCCceEEEcc---C--CeEEEccCC
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYP--IPQVFWYKD--GQVI---E--------NDGVHYRITE---S--NRLHINQAN 191 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~--g~~l---~--------~~~~~~~~~~---~--~sL~I~~v~ 191 (558)
+...+....+.+|++++|.|...+.. ...+.|++. |+.+ - .-..++.... . .+|.|.+++
T Consensus 4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~ 83 (120)
T d1hxma1 4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS 83 (120)
T ss_dssp EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccc
Confidence 34456677789999999999987654 356999972 2111 0 0112443322 1 379999999
Q ss_pred CCCCeEEEEEEEeC
Q psy10160 192 ATDSGEYRCVASNS 205 (558)
Q Consensus 192 ~~D~G~Y~C~a~N~ 205 (558)
.+|+|.|.|.....
T Consensus 84 ~~Dsa~YyCA~~~~ 97 (120)
T d1hxma1 84 ERDEGSYYCACDTL 97 (120)
T ss_dssp GGGCEEEEEEEECC
T ss_pred ccCCceeecCcccC
Confidence 99999999976553
|
| >d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.76 E-value=3.8e-05 Score=60.17 Aligned_cols=70 Identities=20% Similarity=0.383 Sum_probs=47.8
Q ss_pred cCCceEeeCCCcEEEEeEeeccC-CCeEEEEEC--CEEec-----------cCCceEEEccCC---eEEEccCCCCCCeE
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYP-IPQVFWYKD--GQVIE-----------NDGVHYRITESN---RLHINQANATDSGE 197 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P-~p~i~W~~~--g~~l~-----------~~~~~~~~~~~~---sL~I~~v~~~D~G~ 197 (558)
.|....+.+|++|+|.|...+.. ...+.|+|. |+.+. ....++.+..+. .|.|.+++.+|+|.
T Consensus 4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~ 83 (112)
T d1kgcd1 4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAV 83 (112)
T ss_dssp CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeeccccccee
Confidence 35567788999999999987644 345899983 22111 111234443332 69999999999999
Q ss_pred EEEEEEe
Q psy10160 198 YRCVASN 204 (558)
Q Consensus 198 Y~C~a~N 204 (558)
|.|.+..
T Consensus 84 YyCa~~~ 90 (112)
T d1kgcd1 84 YYCILPL 90 (112)
T ss_dssp EEEECCC
T ss_pred EeeeEec
Confidence 9997654
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=97.75 E-value=4.1e-05 Score=59.98 Aligned_cols=71 Identities=20% Similarity=0.352 Sum_probs=47.4
Q ss_pred CCceEeeCCCcEEEEeEeeccC---CCeEEEEEC--CEE---ec--------cCCceEEEcc---CCeEEEccCCCCCCe
Q psy10160 136 LETQVFGVGSDISIPCDVDGYP---IPQVFWYKD--GQV---IE--------NDGVHYRITE---SNRLHINQANATDSG 196 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P---~p~i~W~~~--g~~---l~--------~~~~~~~~~~---~~sL~I~~v~~~D~G 196 (558)
|....+.+|++++|.|...+.. ...+.|+|. +.. +. ....++.... ..+|.|.+++.+|+|
T Consensus 7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa 86 (112)
T d1lgva1 7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA 86 (112)
T ss_dssp CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence 5567789999999999977642 345899973 211 10 0011222221 236999999999999
Q ss_pred EEEEEEEeCC
Q psy10160 197 EYRCVASNSY 206 (558)
Q Consensus 197 ~Y~C~a~N~~ 206 (558)
.|.|.+.+..
T Consensus 87 ~YyCa~~~~~ 96 (112)
T d1lgva1 87 DYYCSSYDGS 96 (112)
T ss_dssp EEEEEEECSS
T ss_pred EEEEeeecCC
Confidence 9999876543
|
| >d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.75 E-value=2.5e-05 Score=61.80 Aligned_cols=70 Identities=19% Similarity=0.327 Sum_probs=47.7
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CE---Eecc--------CCceEEEccC---CeEEEccCCCCCCeEE
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQ---VIEN--------DGVHYRITES---NRLHINQANATDSGEY 198 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~---~l~~--------~~~~~~~~~~---~sL~I~~v~~~D~G~Y 198 (558)
.|....+.+|+.++|.|...+.-...+.|++. +. .+.. ...++..... .+|.|.+++.+|+|.|
T Consensus 7 ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavY 86 (119)
T d1f3rb2 7 SPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATY 86 (119)
T ss_dssp ETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEE
T ss_pred cCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEE
Confidence 35566788999999999987655556999983 11 1110 1123332222 2699999999999999
Q ss_pred EEEEEe
Q psy10160 199 RCVASN 204 (558)
Q Consensus 199 ~C~a~N 204 (558)
.|.+.+
T Consensus 87 yCa~~~ 92 (119)
T d1f3rb2 87 FCYQYN 92 (119)
T ss_dssp EEEEES
T ss_pred EeeccC
Confidence 997654
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.74 E-value=2e-05 Score=59.40 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=31.8
Q ss_pred ceE-ecCCeEEEcCCCCCCCEEEEEEEEeCCcce-EEEEEEEE
Q psy10160 8 NYE-LNKNMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQ 48 (558)
Q Consensus 8 r~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~s~~l~V~ 48 (558)
++. ..+++|.|.+++.+|+|.|+|.|.|..|.. ....+.|.
T Consensus 49 ~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~i~Vi 91 (92)
T d1epfa2 49 RFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 91 (92)
T ss_dssp TEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred eeeeeeeeeEEECCCCHHhCEEEEEEEEECcCCEEEEEEEEEE
Confidence 344 456799999999999999999999976654 35555554
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=97.74 E-value=1.2e-05 Score=60.18 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=31.2
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEe
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQA 49 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~ 49 (558)
.++.|.|.+++.+|+|.|+|.|.|..|...+..+.|.+
T Consensus 47 ~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V 84 (88)
T d2fcba2 47 SDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITV 84 (88)
T ss_dssp SCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred cccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEE
Confidence 45789999999999999999999998876554444444
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.74 E-value=6e-05 Score=56.90 Aligned_cols=62 Identities=24% Similarity=0.526 Sum_probs=42.9
Q ss_pred CCcEEEEeEeeccCCCeEEEEEC--CEE---e---ccC----CceEEEc--c-C--CeEEEccCCCCCCeEEEEEEEeC
Q psy10160 144 GSDISIPCDVDGYPIPQVFWYKD--GQV---I---END----GVHYRIT--E-S--NRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 144 G~~v~L~C~~~g~P~p~i~W~~~--g~~---l---~~~----~~~~~~~--~-~--~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
|++|+|.|.......+.+.|+|. +.. | ... ..++... . . .+|.|.+++.+|+|.|.|.+...
T Consensus 1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~ 79 (94)
T d2gj6d1 1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD 79 (94)
T ss_dssp TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence 78999999988877788999982 211 1 110 1133322 1 1 26999999999999999987643
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=1.4e-05 Score=60.86 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=29.0
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceEE--EEEEE
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAVS--WTVTL 47 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s--~~l~V 47 (558)
++|.|.+++.+|+|.|+|.|.|..|...+ +.|.|
T Consensus 60 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~L~V 95 (96)
T d2c9aa1 60 ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95 (96)
T ss_dssp EEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred eEEEECCCCHHHCeEEEEEEEeCCCeEEEEEEEEEE
Confidence 57999999999999999999999998754 34444
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.72 E-value=1.2e-05 Score=61.23 Aligned_cols=40 Identities=25% Similarity=0.419 Sum_probs=32.4
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceEE--EEEEEEeCC
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVS--WTVTLQALP 51 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s--~~l~V~~~p 51 (558)
.+++|.|.+++.+|+|.|+|.|.|..|...+ +.|+|...|
T Consensus 54 ~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~~~P 95 (96)
T d1l6za2 54 NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 95 (96)
T ss_dssp TTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEECCSC
T ss_pred CceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEEEcCC
Confidence 5579999999999999999999999998764 455554443
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=1.3e-05 Score=60.15 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=29.8
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTL 47 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V 47 (558)
..++|.|.+++.+|+|.|+|.|.|..|... ++.|.|
T Consensus 52 ~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V 88 (90)
T d1vcaa2 52 TTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEI 88 (90)
T ss_dssp TEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEE
T ss_pred CCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEE
Confidence 456899999999999999999999999763 444444
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.71 E-value=2.7e-05 Score=59.38 Aligned_cols=44 Identities=25% Similarity=0.440 Sum_probs=34.1
Q ss_pred CCceE-ecCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEe
Q psy10160 6 SENYE-LNKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQA 49 (558)
Q Consensus 6 ~~r~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~ 49 (558)
+.|+. ..+++|.|.+++.+|+|.|+|.+.+..|... +.++.|.+
T Consensus 51 ~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~~~~~~~L~V 96 (98)
T d1hnga1 51 SGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRI 96 (98)
T ss_dssp STTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEE
T ss_pred CCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCCCEEEEEEEEEEE
Confidence 34444 3778999999999999999999999998763 44555544
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=97.71 E-value=1.8e-05 Score=60.36 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=29.8
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTL 47 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V 47 (558)
..++|.|.+++.+|+|.|+|.|.|..|... ++.|+|
T Consensus 60 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 96 (97)
T d3dara1 60 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96 (97)
T ss_dssp GGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred CcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence 457999999999999999999999999763 444443
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.71 E-value=7.2e-05 Score=58.41 Aligned_cols=69 Identities=23% Similarity=0.522 Sum_probs=46.6
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEe------------cc---CCceEEEccC----CeEEEccCCCC
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVI------------EN---DGVHYRITES----NRLHINQANAT 193 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l------------~~---~~~~~~~~~~----~sL~I~~v~~~ 193 (558)
.|...++.+|++++|.|...+ ....+.|+|. |... .. ...++..... .+|.|.+++.+
T Consensus 5 ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~ 83 (111)
T d2esve1 5 FPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELE 83 (111)
T ss_dssp ECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGG
T ss_pred CCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccC
Confidence 466778899999999998654 3457899973 2110 00 1123333221 27999999999
Q ss_pred CCeEEEEEEEe
Q psy10160 194 DSGEYRCVASN 204 (558)
Q Consensus 194 D~G~Y~C~a~N 204 (558)
|+|.|.|.+..
T Consensus 84 Dsa~YyCa~~~ 94 (111)
T d2esve1 84 DSGVYFCASSQ 94 (111)
T ss_dssp GCEEEEEEEES
T ss_pred CCceEEEeeeC
Confidence 99999997653
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=2.2e-05 Score=61.40 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=31.1
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQA 49 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~ 49 (558)
.+|.|.+++.+|+|.|+|.|+|..|... ++.|.|..
T Consensus 72 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~ 108 (110)
T d2avga1 72 FELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHE 108 (110)
T ss_dssp EEEEEESCCTTCCEEEEEEEEETTEEEEEEEEEEEES
T ss_pred EEEEEeccCHHHCcEEEEEEEECCCeEEEEEEEEEEe
Confidence 4799999999999999999999999874 66666654
|
| >d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.66 E-value=3.4e-05 Score=59.91 Aligned_cols=69 Identities=22% Similarity=0.427 Sum_probs=47.5
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEe---c-c-------CCceEEEcc---CCeEEEccCCCCCCeEEE
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVI---E-N-------DGVHYRITE---SNRLHINQANATDSGEYR 199 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l---~-~-------~~~~~~~~~---~~sL~I~~v~~~D~G~Y~ 199 (558)
|....+.+|++++|.|.........+.|++. |... - . -..++.... ..+|.|.+++.+|+|.|.
T Consensus 6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Yy 85 (108)
T d1nfde1 6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY 85 (108)
T ss_dssp CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEE
Confidence 5567788999999999876555556899972 2211 0 0 012343322 237999999999999999
Q ss_pred EEEEe
Q psy10160 200 CVASN 204 (558)
Q Consensus 200 C~a~N 204 (558)
|-+..
T Consensus 86 CA~~~ 90 (108)
T d1nfde1 86 CLSSY 90 (108)
T ss_dssp EEEEE
T ss_pred EEeec
Confidence 98764
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=2.7e-05 Score=58.28 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=32.4
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceEE--EEEEEEeCC
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVS--WTVTLQALP 51 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s--~~l~V~~~p 51 (558)
.++.|.|.+++.+|+|.|+|.|.|..|...+ +.|+|..+|
T Consensus 47 ~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~~~P 88 (89)
T d1f2qa2 47 ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 88 (89)
T ss_dssp CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSC
T ss_pred ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEEeCC
Confidence 4568999999999999999999998887654 556666554
|
| >d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.66 E-value=8e-05 Score=58.38 Aligned_cols=70 Identities=20% Similarity=0.318 Sum_probs=46.9
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCCeEEEEE--CCEEec--------------cCCceEEEc-c---CCeEEEccCCCCC
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYK--DGQVIE--------------NDGVHYRIT-E---SNRLHINQANATD 194 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~--~g~~l~--------------~~~~~~~~~-~---~~sL~I~~v~~~D 194 (558)
.|....+.+|+.++|.|...+ ....+.|+| .++... ....++... . +.+|.|.+++.+|
T Consensus 5 ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 83 (113)
T d2ntsp1 5 TPRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGD 83 (113)
T ss_dssp ECSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGG
T ss_pred CCCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCccc
Confidence 356677899999999999655 345789998 222110 001122221 1 1269999999999
Q ss_pred CeEEEEEEEeC
Q psy10160 195 SGEYRCVASNS 205 (558)
Q Consensus 195 ~G~Y~C~a~N~ 205 (558)
+|.|.|.+...
T Consensus 84 sa~YyCA~~~~ 94 (113)
T d2ntsp1 84 SALYLCASSLA 94 (113)
T ss_dssp CEEEEEEEESS
T ss_pred ceeeeeeeeCC
Confidence 99999987643
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.66 E-value=2.8e-05 Score=59.64 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=30.7
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQ 48 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~ 48 (558)
.+++|.|.+++.+|+|.|+|.|.|..|... ++.|.|.
T Consensus 61 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 98 (100)
T d1qz1a3 61 DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 98 (100)
T ss_dssp TSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CceEEEeCCCCcccCEEEEEEEEECCCEEEEEEEEEEE
Confidence 457899999999999999999999999864 4455543
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=2.8e-05 Score=61.17 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=31.7
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALP 51 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p 51 (558)
.+|.|.+++.+|+|.|+|.|.|..|... ++.|.|...+
T Consensus 68 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~ 106 (113)
T d2dava1 68 FEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 106 (113)
T ss_dssp EEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEECCC
T ss_pred EEEEEccCCHHHCeEEEEEEEeCCCEEEEEEEEEEEcCC
Confidence 3699999999999999999999999874 5666666443
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.62 E-value=1.6e-05 Score=61.75 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=34.2
Q ss_pred cCCceEe-cCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEE
Q psy10160 5 RSENYEL-NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48 (558)
Q Consensus 5 ~~~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~ 48 (558)
.++|..+ .+++|.|.+++.+|+|.|+|.+.+..+...+..+.++
T Consensus 61 y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~v~~~~~~~~~~~v~L~ 105 (107)
T d1l6za1 61 YSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFH 105 (107)
T ss_dssp CCSSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEECCCCEEEC
T ss_pred ceeEEEEcccccEEEcCCCchhCEEEEEEEEECCCCEEEEEEEEE
Confidence 4567775 7889999999999999999999987765444444443
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=1.6e-05 Score=59.99 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=29.2
Q ss_pred eEecCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEE
Q psy10160 9 YELNKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47 (558)
Q Consensus 9 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V 47 (558)
+...+++|.|.+++.+|+|.|+|.|.|..+. +..+.|
T Consensus 55 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~--t~~l~V 91 (93)
T d1n26a1 55 WAGMGRRLLLRSVQLHDSGNYSCYRAGRPAG--TVHLLV 91 (93)
T ss_dssp EEEESSEEEECSCCGGGCEEEEEESSSSCSC--EEEEEE
T ss_pred EecCCCEEEECCCChhcCEEEEEEECCcccc--EEEEEE
Confidence 3356789999999999999999999986654 334544
|
| >d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.61 E-value=0.00013 Score=55.58 Aligned_cols=77 Identities=14% Similarity=0.248 Sum_probs=46.9
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeecc-CC-CeEEEEECCEEeccCCc-eEEEccCCe---EEEccCCCCCCeEEEEE
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGY-PI-PQVFWYKDGQVIENDGV-HYRITESNR---LHINQANATDSGEYRCV 201 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~-~~~~~~~~s---L~I~~v~~~D~G~Y~C~ 201 (558)
.||.+.+.+.. ....|+.++|.|.+.|. |. ..++|.++|..+..... ......+++ ...-.+..++.+.|+|.
T Consensus 3 ~~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~ 81 (99)
T d1lk2b_ 3 KTPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACR 81 (99)
T ss_dssp BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEE
T ss_pred CCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEE
Confidence 35666553322 13468889999999996 33 35899999998764321 112223332 22223345667789999
Q ss_pred EEeC
Q psy10160 202 ASNS 205 (558)
Q Consensus 202 a~N~ 205 (558)
+.-.
T Consensus 82 V~H~ 85 (99)
T d1lk2b_ 82 VKHD 85 (99)
T ss_dssp EECT
T ss_pred EEeC
Confidence 8764
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=97.61 E-value=2.3e-05 Score=58.66 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=30.5
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceEE--EEEEEE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVS--WTVTLQ 48 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s--~~l~V~ 48 (558)
.++.|.|.+++.+|+|.|+|.|.|..|...+ +.|+|+
T Consensus 49 ~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV~ 87 (89)
T d1fnla2 49 HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT 87 (89)
T ss_dssp ECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred cccccEECccceeccceEEEEEEeCCCCeEEeeEEEEEE
Confidence 5679999999999999999999999887654 444544
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=2.5e-05 Score=63.01 Aligned_cols=35 Identities=26% Similarity=0.442 Sum_probs=29.0
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQA 49 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~ 49 (558)
.+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 94 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 128 (130)
T d1gxea_ 94 SIFTVEGAEKEDEGVYTVTVKNPVGED-QVNLTVKV 128 (130)
T ss_dssp EEEECSCCCTTTCEEEEEEEECSSCEE-EEEEEEEE
T ss_pred EEEEECcCChhcCEEEEEEEEECCCEE-EEEEEEEE
Confidence 579999999999999999999999986 33444444
|
| >d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.61 E-value=0.00011 Score=57.99 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=45.8
Q ss_pred cCCceEeeCCCcEEEEeEeeccC--CCeEEEEEC--CEE---e---cc---------CCceEEEccC-----CeEEEccC
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYP--IPQVFWYKD--GQV---I---EN---------DGVHYRITES-----NRLHINQA 190 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~--g~~---l---~~---------~~~~~~~~~~-----~sL~I~~v 190 (558)
++...++.+|++++|.|.+.+.. ...+.|++. |+. + .. ...++.+..+ ..|.|.++
T Consensus 7 ~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l 86 (120)
T d1ypzf1 7 PEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSL 86 (120)
T ss_dssp SCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSC
T ss_pred CCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccc
Confidence 34456667899999999987643 345899982 211 1 00 1124443322 15999999
Q ss_pred CCCCCeEEEEEEE
Q psy10160 191 NATDSGEYRCVAS 203 (558)
Q Consensus 191 ~~~D~G~Y~C~a~ 203 (558)
+.+|+|.|.|...
T Consensus 87 ~~~Dsa~YyCA~~ 99 (120)
T d1ypzf1 87 EEEDEAIYYCSYG 99 (120)
T ss_dssp CGGGCSEEEEEEC
T ss_pred ccccceeEEEEEc
Confidence 9999999999764
|
| >d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-A group [TaxId: 10090]
Probab=97.60 E-value=4.5e-05 Score=58.13 Aligned_cols=76 Identities=13% Similarity=0.303 Sum_probs=47.2
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeecc-C-CCeEEEEECCEEeccCC--ceEEEccCCe---EEEccCCCCCCeEEEEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGY-P-IPQVFWYKDGQVIENDG--VHYRITESNR---LHINQANATDSGEYRCV 201 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P-~p~i~W~~~g~~l~~~~--~~~~~~~~~s---L~I~~v~~~D~G~Y~C~ 201 (558)
||.+.+.+.. .+..|+.++|.|.+.|. | ...+.|++||..+..+- ....-..+++ ...-.+..++.+.|+|+
T Consensus 3 pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~ 81 (100)
T d1muja1 3 APQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCK 81 (100)
T ss_dssp CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEE
T ss_pred CCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEE
Confidence 5666554333 34578899999999997 3 34699999998875421 0111122332 22223445677789999
Q ss_pred EEeC
Q psy10160 202 ASNS 205 (558)
Q Consensus 202 a~N~ 205 (558)
+...
T Consensus 82 V~H~ 85 (100)
T d1muja1 82 VEHW 85 (100)
T ss_dssp EECT
T ss_pred EEEC
Confidence 9864
|
| >d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.59 E-value=9.2e-05 Score=57.91 Aligned_cols=68 Identities=25% Similarity=0.503 Sum_probs=45.7
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEE---e---------cc---CCceEEEc-cC---CeEEEccCCCC
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQV---I---------EN---DGVHYRIT-ES---NRLHINQANAT 193 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~---l---------~~---~~~~~~~~-~~---~sL~I~~v~~~ 193 (558)
.|...++.+|++++|.|...+ ....+.|++. ++. + .. ...++... .. .+|.|.+++.+
T Consensus 5 ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 83 (112)
T d1kgce1 5 SPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQE 83 (112)
T ss_dssp ECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGG
T ss_pred CCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcC
Confidence 456677899999999998644 3557999982 210 0 00 11233222 11 26999999999
Q ss_pred CCeEEEEEEE
Q psy10160 194 DSGEYRCVAS 203 (558)
Q Consensus 194 D~G~Y~C~a~ 203 (558)
|+|.|.|.+.
T Consensus 84 Dsa~YyCa~~ 93 (112)
T d1kgce1 84 DSAVYLCASS 93 (112)
T ss_dssp GCEEEEEEEE
T ss_pred CCEEEEEeee
Confidence 9999999775
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=1.7e-05 Score=61.56 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=29.2
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQA 49 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~ 49 (558)
+.|.|.+++.+|+|.|+|.|.|..|... ++.|.|..
T Consensus 62 ~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~ 98 (105)
T d1wwca_ 62 GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLK 98 (105)
T ss_dssp EEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCSC
T ss_pred EEEEEeecccccceEEEEEEEcCCCEEEEEEEEEEEe
Confidence 4699999999999999999999999763 44444433
|
| >d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=8.2e-05 Score=55.78 Aligned_cols=71 Identities=14% Similarity=0.276 Sum_probs=48.7
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~ 203 (558)
.|.+...|. ..|..|++|+|.|.... +.-.+.|+|+|...... +........+.|.+|+.+|+|.|.|...
T Consensus 4 kPsLsa~P~-~~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~~--~~~~~~~a~F~i~~v~~~~~G~Y~C~~~ 74 (93)
T d1olla2 4 TPTLSVHPG-PEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQ--RGYGKVQAEFPLGPVTTAHRGTYRCFGS 74 (93)
T ss_dssp CCEEEEESC-SEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEE--EEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred CCEEEEeCC-CcccCCCcEEEEECCCC-CCCEEEEEECCCcccee--ecCCCceeEEEecccChhcCceEEEEeE
Confidence 456666664 45789999999999743 44568899987532211 1111122369999999999999999743
|
| >d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.58 E-value=0.00017 Score=57.24 Aligned_cols=69 Identities=19% Similarity=0.497 Sum_probs=47.2
Q ss_pred CCceEeeCCCcEEEEeEeeccC--CCeEEEEEC--CEE---e----------cc---CCceEEEcc---C--CeEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYP--IPQVFWYKD--GQV---I----------EN---DGVHYRITE---S--NRLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P--~p~i~W~~~--g~~---l----------~~---~~~~~~~~~---~--~sL~I~~v 190 (558)
+....+.+|++++|.|.++|.. ...+.|++. |+. + .. ...||.+.. . ..|.|.++
T Consensus 8 ~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l 87 (123)
T d1hxmb1 8 QISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNV 87 (123)
T ss_dssp CSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSC
T ss_pred CCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccc
Confidence 3456678899999999998854 345899982 211 1 00 123555432 1 25999999
Q ss_pred CCCCCeEEEEEEEe
Q psy10160 191 NATDSGEYRCVASN 204 (558)
Q Consensus 191 ~~~D~G~Y~C~a~N 204 (558)
+.+|+|.|.|-...
T Consensus 88 ~~~Dsa~YyCA~~~ 101 (123)
T d1hxmb1 88 EKQDIATYYCALWE 101 (123)
T ss_dssp CGGGCEEEEEEEEE
T ss_pred ccccCcEEEEeeeC
Confidence 99999999998654
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=97.58 E-value=3e-05 Score=59.65 Aligned_cols=35 Identities=34% Similarity=0.469 Sum_probs=30.3
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEE
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQ 48 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~ 48 (558)
.+|.|.+++.+|+|.|+|.|.|..|... ++.|.|+
T Consensus 65 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 100 (102)
T d1fhga_ 65 CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 100 (102)
T ss_dssp EEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eeeEecCCCHHhCEEEEEEEEECCcEEEEEEEEEEE
Confidence 4799999999999999999999999874 5666664
|
| >d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=4.3e-05 Score=57.83 Aligned_cols=75 Identities=13% Similarity=0.240 Sum_probs=49.7
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccC-CceEEEccCCeEEEccCCCCCCeEEEEEEEeC
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIEND-GVHYRITESNRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
.|.+...|. ..|..|++|+|.|+.. .+.-.+.++|+|...... ...........+.|.+|+.+|+|.|.|.....
T Consensus 4 kP~Lsa~Ps-~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~ 79 (96)
T d1ugna1 4 KPTLWAEPG-SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSD 79 (96)
T ss_dssp CCEEEEESC-SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEET
T ss_pred CCEEEeECC-CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeCC
Confidence 455566665 4578999999999963 345568888887543210 00000112347999999999999999987543
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.56 E-value=1.6e-05 Score=60.59 Aligned_cols=36 Identities=31% Similarity=0.356 Sum_probs=30.3
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQA 49 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~ 49 (558)
.+|.|.+++.+|+|.|+|.|.|..|... ++.|.|..
T Consensus 57 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 93 (97)
T d1koaa1 57 YGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTR 93 (97)
T ss_dssp EEEEESCCCSGGGSCEEEEEEETTEEEEEEECCEEEC
T ss_pred eEEEeCCCceecCEEEEEEEEECCCEEEEEEEEEEee
Confidence 3799999999999999999999999864 55666654
|
| >d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.56 E-value=0.00019 Score=55.95 Aligned_cols=70 Identities=21% Similarity=0.395 Sum_probs=46.2
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEe------ccC--------CceEEEc-c---CCeEEEccCCCC
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVI------END--------GVHYRIT-E---SNRLHINQANAT 193 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l------~~~--------~~~~~~~-~---~~sL~I~~v~~~ 193 (558)
..|....+.+|++++|.|..+.. ...+.|++. |+.+ ... ..++... . +.+|.|.++..+
T Consensus 4 Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 82 (112)
T d2bnub1 4 QTPKFQVLKTGQSMTLQCAQDMN-HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPS 82 (112)
T ss_dssp EECSEEEEETTCCEEEEEEESSC-CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGG
T ss_pred ECCCeEEECCCCCEEEEEEEECC-ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHH
Confidence 34566778999999999987543 457999972 2111 000 0111211 1 136999999999
Q ss_pred CCeEEEEEEEe
Q psy10160 194 DSGEYRCVASN 204 (558)
Q Consensus 194 D~G~Y~C~a~N 204 (558)
|+|.|.|.+..
T Consensus 83 DsavYyCA~~~ 93 (112)
T d2bnub1 83 QTSVYFCASSY 93 (112)
T ss_dssp GCEEEEEEEEC
T ss_pred HCEEEEEeecC
Confidence 99999997653
|
| >d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=0.00028 Score=49.21 Aligned_cols=57 Identities=25% Similarity=0.555 Sum_probs=41.2
Q ss_pred eCCCcEEEEeEeeccCCCe--EEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEE
Q psy10160 142 GVGSDISIPCDVDGYPIPQ--VFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVAS 203 (558)
Q Consensus 142 ~~G~~v~L~C~~~g~P~p~--i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~ 203 (558)
..|..+.|.|.....+.+. -.|.|+|+.+..+... ...-.+.|.. .+|+|.|.|+..
T Consensus 10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~---~~~tey~V~~--~D~SGeY~CVFl 68 (80)
T d3b5ha2 10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP---GQKTEFKVDS--DDQWGEYSCVFL 68 (80)
T ss_dssp EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC---CSEEEEEECG--GGCCEEEEEEEE
T ss_pred cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCC---CCceEEEEec--CCCCceEEEEEc
Confidence 4588899999988765543 6799999999875311 1112466654 788999999965
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=4e-05 Score=59.56 Aligned_cols=38 Identities=26% Similarity=0.300 Sum_probs=30.4
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEeCC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQALP 51 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~~p 51 (558)
..|.|.++..+|+|.|+|.|.|..|... ++.|.|..+|
T Consensus 63 ~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v~v~~~P 101 (107)
T d1he7a_ 63 GCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 101 (107)
T ss_dssp EEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCCSCT
T ss_pred eEEEECcccHHHCcEEEEEEEeCCCEEEEEEEEEEEcCC
Confidence 4699999999999999999999999863 4455444444
|
| >d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.54 E-value=0.00012 Score=57.17 Aligned_cols=72 Identities=19% Similarity=0.419 Sum_probs=47.5
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCCeEEEEECC--EEe------cc--------CCceEEEc----cCCeEEEccCCCCC
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG--QVI------EN--------DGVHYRIT----ESNRLHINQANATD 194 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g--~~l------~~--------~~~~~~~~----~~~sL~I~~v~~~D 194 (558)
.|...++.+|+.++|.|.... -...+.|++.. ..+ .. ...++... ...+|.|.+++.+|
T Consensus 4 sP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D 82 (112)
T d2cdeb1 4 TPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSH 82 (112)
T ss_dssp ECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTT
T ss_pred CCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccc
Confidence 456678899999999998653 24579999832 111 00 01112221 12369999999999
Q ss_pred CeEEEEEEEeCCc
Q psy10160 195 SGEYRCVASNSYT 207 (558)
Q Consensus 195 ~G~Y~C~a~N~~G 207 (558)
+|.|.|-+....+
T Consensus 83 sa~YyCA~~~~~~ 95 (112)
T d2cdeb1 83 TSQYLCASSENIG 95 (112)
T ss_dssp CSEEEEEEECSSS
T ss_pred cccEEEEEecCCC
Confidence 9999998775443
|
| >d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=8.6e-05 Score=56.55 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=48.2
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCC-ceEEEccCCe---EEEccCCCCCCeEEEEE
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDG-VHYRITESNR---LHINQANATDSGEYRCV 201 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~-~~~~~~~~~s---L~I~~v~~~D~G~Y~C~ 201 (558)
.||.+.+.+.. .+..|+.++|.|.+.|. |.. .+.|.+||..+.... .......+++ ...-.+..+|.+.|+|.
T Consensus 4 ~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~ 82 (100)
T d1k5nb_ 4 RTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACR 82 (100)
T ss_dssp BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEE
T ss_pred CCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEE
Confidence 45666553222 23578999999999996 433 589999999885321 1122233443 22223456677899999
Q ss_pred EEeC
Q psy10160 202 ASNS 205 (558)
Q Consensus 202 a~N~ 205 (558)
+.-.
T Consensus 83 V~H~ 86 (100)
T d1k5nb_ 83 VNHV 86 (100)
T ss_dssp EECT
T ss_pred EEeC
Confidence 8764
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.54 E-value=9.9e-05 Score=58.09 Aligned_cols=71 Identities=23% Similarity=0.225 Sum_probs=46.2
Q ss_pred CCceEeeCCCcEEEEeEeecc---CC---CeEEEEECCE----Eec----------cCCceEEEcc-----CCeEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGY---PI---PQVFWYKDGQ----VIE----------NDGVHYRITE-----SNRLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~---P~---p~i~W~~~g~----~l~----------~~~~~~~~~~-----~~sL~I~~v 190 (558)
|....+.+|+.|.|.|..... +. -.+.|++... .+. ....++.+.. +.+|.|.++
T Consensus 7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v 86 (118)
T d1qfoa_ 7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL 86 (118)
T ss_dssp CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCC
Confidence 456778999999999997531 21 1256776321 110 0122444432 237999999
Q ss_pred CCCCCeEEEEEEEeCC
Q psy10160 191 NATDSGEYRCVASNSY 206 (558)
Q Consensus 191 ~~~D~G~Y~C~a~N~~ 206 (558)
+.+|+|.|.|.+....
T Consensus 87 ~~~DsG~Y~C~v~~~~ 102 (118)
T d1qfoa_ 87 KPEDSGTYNFRFEISD 102 (118)
T ss_dssp CGGGCEEEEEEEECC-
T ss_pred ChhHCEEEEEEEEeCC
Confidence 9999999999997653
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=97.53 E-value=4.3e-05 Score=58.24 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=29.9
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEE
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQ 48 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~ 48 (558)
+|.|.+++.+|+|.|+|.|.|..|... +..|.|+
T Consensus 62 ~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~L~V~ 96 (98)
T d1g1ca_ 62 ELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ 96 (98)
T ss_dssp EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEeccCccccCEEEEEEEEECCcEEEEEEEEEEE
Confidence 899999999999999999999999874 5666664
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.53 E-value=2.2e-05 Score=59.28 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=29.3
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEE
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTL 47 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V 47 (558)
.++|.|.+++.+|+|.|+|.|.|..|... ++.|.|
T Consensus 57 ~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V 92 (93)
T d1wiua_ 57 TTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92 (93)
T ss_dssp EEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred ceeeccccccccccEEEEEEEEECCCEEEEEEEEEE
Confidence 35899999999999999999999999874 445444
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=1.9e-05 Score=59.37 Aligned_cols=35 Identities=34% Similarity=0.477 Sum_probs=28.8
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEE
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~ 48 (558)
+.|.|.+++.+|+|.|+|.|.|..|...+..+.|.
T Consensus 54 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~~~l~ 88 (91)
T d1rhfa1 54 GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLT 88 (91)
T ss_dssp EEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEE
T ss_pred eeEEECCCCcccCEEEEEEEEECCCCEEEEEEEEE
Confidence 47999999999999999999999998754434433
|
| >d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.53 E-value=0.00031 Score=54.84 Aligned_cols=72 Identities=22% Similarity=0.422 Sum_probs=47.1
Q ss_pred EEecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEec------cC--------CceEEEc-c---CCeEEEccCC
Q psy10160 132 VNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVIE------ND--------GVHYRIT-E---SNRLHINQAN 191 (558)
Q Consensus 132 ~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l~------~~--------~~~~~~~-~---~~sL~I~~v~ 191 (558)
+...|....+.+|++++|.|.... -...+.|+|. |..+. .. ..++... . ...|.|.+++
T Consensus 3 V~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 81 (113)
T d1j8he1 3 VTQSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAS 81 (113)
T ss_dssp EEESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCC
T ss_pred EEccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCc
Confidence 344566778899999999998643 3457899972 21110 00 0122221 1 1369999999
Q ss_pred CCCCeEEEEEEEe
Q psy10160 192 ATDSGEYRCVASN 204 (558)
Q Consensus 192 ~~D~G~Y~C~a~N 204 (558)
.+|+|.|.|.+..
T Consensus 82 ~~Dsa~YyCa~~~ 94 (113)
T d1j8he1 82 TNQTSMYLCASSS 94 (113)
T ss_dssp GGGCEEEEEEEEC
T ss_pred cCCcccEEeeEcc
Confidence 9999999998764
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=97.52 E-value=4.1e-05 Score=59.61 Aligned_cols=35 Identities=37% Similarity=0.476 Sum_probs=29.8
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEE
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTL 47 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V 47 (558)
.+.|.|.+++.+|+|.|+|.|.|..|... ++.|+|
T Consensus 73 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V 108 (109)
T d2fdbp2 73 IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108 (109)
T ss_dssp EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred cEEEEECCCCHHHCeEEEEEEEECCCEEEEEEEEEE
Confidence 35799999999999999999999999874 555554
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=97.50 E-value=1.8e-05 Score=59.54 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=30.0
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTL 47 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V 47 (558)
..++|.|.+++.+|+|.|+|.|.|..|... ++.|.|
T Consensus 53 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 89 (91)
T d1tnna_ 53 YKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 89 (91)
T ss_dssp SEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEEEEC
T ss_pred ceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEEEEE
Confidence 446899999999999999999999999863 455544
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.49 E-value=7.8e-05 Score=57.07 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=27.7
Q ss_pred CeEEEcCCC-CCCCEEEEEEEEeCCcceE-EEEEEE
Q psy10160 14 NMLTIKRVE-PERLGAYTCQAYNGLGRAV-SWTVTL 47 (558)
Q Consensus 14 ~~L~I~~v~-~~D~G~Y~C~a~n~~g~~~-s~~l~V 47 (558)
.+|.|.+++ .+|+|.|+|.|.|..|... +..|.|
T Consensus 65 ~~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~~~L~V 100 (101)
T d3b5ha1 65 SELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100 (101)
T ss_dssp EEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEeccccccCCEEEEEEEEECCCEEEEEEEEEE
Confidence 489999998 5799999999999999874 444443
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.48 E-value=6.4e-05 Score=60.22 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=29.6
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEe
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQA 49 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~ 49 (558)
+.+|.|.+++.+|+|.|+|.+.+..+... .+.|.|..
T Consensus 80 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~ 117 (126)
T d1pkoa_ 80 KVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVED 117 (126)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred eEEEEEEEEchhHCeEEEEEEEECCCEEEEEEEEEEeC
Confidence 35899999999999999999999876553 45555554
|
| >d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.47 E-value=0.00022 Score=54.16 Aligned_cols=75 Identities=15% Similarity=0.259 Sum_probs=49.6
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCce-EEEccCCeEEEccCCCCCCeEEEEEEEeC
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVH-YRITESNRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~-~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
.|.+...|.. .|..|++|+|.|...- +.-.+.|+|+|......... ..........|..+...|+|.|.|.....
T Consensus 6 kPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~ 81 (99)
T d1nkra2 6 KPSLSAQPGP-TVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFH 81 (99)
T ss_dssp CCEEEEESCS-EECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred CCEEEEeCCC-cccCCCeEEEEECCCC-CccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecC
Confidence 5666666644 6789999999998654 45578999988543221100 01111224678888899999999986644
|
| >d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.47 E-value=8e-06 Score=62.12 Aligned_cols=70 Identities=20% Similarity=0.456 Sum_probs=46.8
Q ss_pred ceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEec-----------cCCceEEEccC-----CeEEEccCCCCCCeEEE
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVIE-----------NDGVHYRITES-----NRLHINQANATDSGEYR 199 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l~-----------~~~~~~~~~~~-----~sL~I~~v~~~D~G~Y~ 199 (558)
...|.+|+.++|.|.... ....+.|+|. |+.+. ....++.+..+ .+|.|.+++.+|+|.|.
T Consensus 2 slsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy 80 (96)
T d1ymmd1 2 ALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYF 80 (96)
T ss_dssp CCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred CceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEe
Confidence 346789999999998764 3456999973 22111 01123332211 26999999999999999
Q ss_pred EEEEeCCce
Q psy10160 200 CVASNSYTS 208 (558)
Q Consensus 200 C~a~N~~G~ 208 (558)
|.+....|.
T Consensus 81 CA~~~~~g~ 89 (96)
T d1ymmd1 81 CATDTTSGT 89 (96)
T ss_dssp EEEEETTSC
T ss_pred EeEecCCCC
Confidence 988765553
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.44 E-value=3.3e-05 Score=60.31 Aligned_cols=38 Identities=34% Similarity=0.459 Sum_probs=30.8
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEe
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQA 49 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~ 49 (558)
..+.|.|.+++.+|+|.|+|.|.|..|... +..+.+++
T Consensus 65 ~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~l~V 103 (110)
T d1f97a2 65 KSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA 103 (110)
T ss_dssp TTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEE
T ss_pred cccceEECCCCccCCEEEEEEEEECCCcEEEEEEEEEEE
Confidence 456899999999999999999999999774 44444444
|
| >d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Second domain of the Flt-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=0.00047 Score=51.35 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=59.1
Q ss_pred CceEeeCCCcEEEEeEeeccCCCeE-EEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEE
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIPQV-FWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTI 215 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p~i-~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 215 (558)
+...+++|+.+.+.|.++. |...+ .|...+..+..++..+.-....-++|++++..|.|.|.|.|... |....+..|
T Consensus 13 ~~V~v~eg~~~vIPC~vT~-P~~~VtL~~~~~~~~~p~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~~-g~~~~S~yl 90 (95)
T d1fltx_ 13 EIIHMTEGRELVIPCRVTS-PNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATVN-GHLYKTNYL 90 (95)
T ss_dssp EEEEECTTSCEEECCCBSC-TTSCCEEEETTTEEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEET-TEEEEEEEE
T ss_pred CEEEEeCCCCEEEEccCCC-CCceeEEEeccCCccCCCCCEEEECCCCCEEEeCCCcccCeEEEEEEEEC-CEEEEEEEE
Confidence 3456789999999999985 66664 57667777766665666566667999999999999999999765 455444444
Q ss_pred EE
Q psy10160 216 RV 217 (558)
Q Consensus 216 ~V 217 (558)
..
T Consensus 91 ~~ 92 (95)
T d1fltx_ 91 TH 92 (95)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.44 E-value=0.00017 Score=55.87 Aligned_cols=69 Identities=19% Similarity=0.392 Sum_probs=47.1
Q ss_pred ceEeeCCCcEEEEeEeecc--CCCeEEEEEC--CE----EeccC----------CceEEEccC---C--eEEEccCCCCC
Q psy10160 138 TQVFGVGSDISIPCDVDGY--PIPQVFWYKD--GQ----VIEND----------GVHYRITES---N--RLHINQANATD 194 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~--P~p~i~W~~~--g~----~l~~~----------~~~~~~~~~---~--sL~I~~v~~~D 194 (558)
...+.+|++++|.|..++. ..-...|.|. ++ .+... .+|+.+..+ + +|+|.+++.+|
T Consensus 4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD 83 (110)
T d1u9ka_ 4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD 83 (110)
T ss_dssp EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence 4567899999999998764 4446889983 22 11111 124444432 1 59999999999
Q ss_pred CeEEEEEEEeCC
Q psy10160 195 SGEYRCVASNSY 206 (558)
Q Consensus 195 ~G~Y~C~a~N~~ 206 (558)
+|.|.|...+.-
T Consensus 84 sa~YyCa~~~~~ 95 (110)
T d1u9ka_ 84 SGLYRCVIYHPP 95 (110)
T ss_dssp CEEEEEEEECTT
T ss_pred CEEEEEEEeCCC
Confidence 999999876543
|
| >d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Hemochromatosis protein Hfe, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=0.00051 Score=51.37 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=46.3
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCC---ceEEEccCCe---EEEccCCCCCCeEEE
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDG---VHYRITESNR---LHINQANATDSGEYR 199 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~---~~~~~~~~~s---L~I~~v~~~D~G~Y~ 199 (558)
.||.+.+... ..++.++|.|.+.|. |.. .+.|.+||..+.... ....-..+++ ...-.+..+|...|+
T Consensus 3 vpP~V~v~~~----~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~yt 78 (94)
T d1de4a1 3 VPPLVKVTHH----VTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYT 78 (94)
T ss_dssp BCCEEEEEEE----ECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEE
T ss_pred CCCEEEEEEc----CCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEE
Confidence 4666654221 246789999999994 654 699999999885321 1222233332 222334556677899
Q ss_pred EEEEeC
Q psy10160 200 CVASNS 205 (558)
Q Consensus 200 C~a~N~ 205 (558)
|.+...
T Consensus 79 C~V~H~ 84 (94)
T d1de4a1 79 CQVEHP 84 (94)
T ss_dssp EEEECT
T ss_pred EEEEeC
Confidence 999875
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=3.5e-05 Score=59.44 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=29.1
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQA 49 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~ 49 (558)
+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.+
T Consensus 62 ~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~v~V 96 (103)
T d1wwbx_ 62 GCLQLDNPTHMNNGDYTLIAKNEYGKD-EKQISAHF 96 (103)
T ss_dssp EEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEECC
T ss_pred EEEEECCCCHHhCceEEEEEeccCCEE-EEEEEEEE
Confidence 479999999999999999999999987 44444444
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=6.8e-05 Score=56.43 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=30.5
Q ss_pred CceEe--cCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEE
Q psy10160 7 ENYEL--NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47 (558)
Q Consensus 7 ~r~~~--~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V 47 (558)
.|..+ .+++|+|.+++.+|+|.|+|.+.|..+.. ++.|+|
T Consensus 51 ~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~~t~-~~~l~V 92 (93)
T d1ccza1 51 NRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTM-KFFLYV 92 (93)
T ss_dssp TSEEECTTTCCEEECSCCGGGCEEEEEECTTCCSCE-EEEEEE
T ss_pred ceEEEcCCeeEEEEEecChhhCEEEEEEEECCCcEE-EEEEEE
Confidence 34443 45799999999999999999999877654 444444
|
| >d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=97.40 E-value=0.00034 Score=52.82 Aligned_cols=78 Identities=18% Similarity=0.354 Sum_probs=47.4
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeecc-C-CCeEEEEECCEEeccCCc--eEEEccCCeEE---EccCCCCCCeEEEEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGY-P-IPQVFWYKDGQVIENDGV--HYRITESNRLH---INQANATDSGEYRCV 201 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P-~p~i~W~~~g~~l~~~~~--~~~~~~~~sL~---I~~v~~~D~G~Y~C~ 201 (558)
||.+.+.+.. ....++.++|.|.+.|+ | ...++|.+||..+..+.. ...-..+++.. .-.+..++...|+|.
T Consensus 3 PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~ 81 (98)
T d1hdmb1 3 PPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCV 81 (98)
T ss_dssp CCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEE
T ss_pred CCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEE
Confidence 5666554322 24567889999999996 3 346999999998854311 11222333211 112345566689999
Q ss_pred EEeCCc
Q psy10160 202 ASNSYT 207 (558)
Q Consensus 202 a~N~~G 207 (558)
+.....
T Consensus 82 V~H~sl 87 (98)
T d1hdmb1 82 VEHIGA 87 (98)
T ss_dssp EECTTS
T ss_pred EEeCCC
Confidence 987643
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=4.8e-05 Score=58.71 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=28.3
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCCcceEE--EEEEEE
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGLGRAVS--WTVTLQ 48 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~s--~~l~V~ 48 (558)
.|.|.+++.+|+|.|+|.|.|..|...+ ..|.|.
T Consensus 66 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~s~~~~l~V~ 101 (104)
T d2aw2a1 66 ILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT 101 (104)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred EEEEccccHHHCCeEEEEEEcCCCeEEEEEEEEEEE
Confidence 5999999999999999999999997653 444443
|
| >d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.38 E-value=0.0001 Score=57.68 Aligned_cols=71 Identities=14% Similarity=0.293 Sum_probs=46.4
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCCCeEEEEECC--EEe------ccC--------CceEEEc--c--CCeEEEccCCCC
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDG--QVI------END--------GVHYRIT--E--SNRLHINQANAT 193 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g--~~l------~~~--------~~~~~~~--~--~~sL~I~~v~~~ 193 (558)
..|....+.+|+.++|.|..... ...+.|++.. +.+ ... ..++... . +.+|.|.+++.+
T Consensus 6 Q~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 84 (113)
T d1nfdb1 6 QSPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELE 84 (113)
T ss_dssp EECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGG
T ss_pred EcCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcC
Confidence 34667778999999999986543 4569999832 111 000 1122111 1 126999999999
Q ss_pred CCeEEEEEEEeC
Q psy10160 194 DSGEYRCVASNS 205 (558)
Q Consensus 194 D~G~Y~C~a~N~ 205 (558)
|+|.|.|.+...
T Consensus 85 Dsa~YyCa~~~~ 96 (113)
T d1nfdb1 85 DSAMYFCASSLR 96 (113)
T ss_dssp GCEEECEEEESS
T ss_pred CceeEEEEeecC
Confidence 999999976543
|
| >d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.38 E-value=0.00019 Score=55.31 Aligned_cols=70 Identities=20% Similarity=0.520 Sum_probs=47.5
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCe--EEEEEC--CEE------ecc-C---------CceEEEccC---C--eEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQ--VFWYKD--GQV------IEN-D---------GVHYRITES---N--RLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~--i~W~~~--g~~------l~~-~---------~~~~~~~~~---~--sL~I~~v 190 (558)
+....+++|+++.|+|.++|..... +.|+|. |+. +.. + ..|+.++.+ + .|.|.++
T Consensus 7 sg~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L 86 (117)
T d1iqdb1 7 SGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSL 86 (117)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeeccc
Confidence 3456678999999999999975443 788872 221 111 1 124444432 2 4999999
Q ss_pred CCCCCeEEEEEEEeC
Q psy10160 191 NATDSGEYRCVASNS 205 (558)
Q Consensus 191 ~~~D~G~Y~C~a~N~ 205 (558)
+.+|++.|.|.....
T Consensus 87 ~~eDtAvYYCA~~~~ 101 (117)
T d1iqdb1 87 RSDDTAVYYCAVPDP 101 (117)
T ss_dssp CGGGCEEEEEEECSS
T ss_pred CcCcceEEEEeEcCC
Confidence 999999999976443
|
| >d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]
Probab=97.37 E-value=0.00021 Score=54.12 Aligned_cols=77 Identities=16% Similarity=0.240 Sum_probs=43.2
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCC--eEEEEECCEEeccCCc--eEEEccCCe---EEEccCCCCCCeEEEEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIP--QVFWYKDGQVIENDGV--HYRITESNR---LHINQANATDSGEYRCV 201 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~g~~l~~~~~--~~~~~~~~s---L~I~~v~~~D~G~Y~C~ 201 (558)
+|.+.+.+.. ....++..+|.|.+.|.-++ .+.|.+||..+..+-. ...-..+++ +..-.+..++...|+|.
T Consensus 4 ~P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~ 82 (98)
T d1d5mb1 4 YPEVTVYPAK-TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQ 82 (98)
T ss_dssp CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEE
T ss_pred CCEEEEECCC-ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEE
Confidence 4555443222 23346777899999996444 5899999988754210 111123332 23335667788899999
Q ss_pred EEeCC
Q psy10160 202 ASNSY 206 (558)
Q Consensus 202 a~N~~ 206 (558)
+....
T Consensus 83 V~H~s 87 (98)
T d1d5mb1 83 VEHPS 87 (98)
T ss_dssp EECTT
T ss_pred EEECC
Confidence 98753
|
| >d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.36 E-value=0.00035 Score=54.03 Aligned_cols=67 Identities=24% Similarity=0.558 Sum_probs=46.7
Q ss_pred ceEeeCCCcEEEEeEeeccCCCe--EEEEEC--CEE------eccC---------CceEEEccCC-----eEEEccCCCC
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIPQ--VFWYKD--GQV------IEND---------GVHYRITESN-----RLHINQANAT 193 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p~--i~W~~~--g~~------l~~~---------~~~~~~~~~~-----sL~I~~v~~~ 193 (558)
...+.+|++++|.|.++|..... +.|+|. |+. +..+ ..|+.++.+. .|.|.+++.+
T Consensus 8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~e 87 (119)
T d1kxvc_ 8 GGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPD 87 (119)
T ss_dssp CEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGG
T ss_pred CceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcC
Confidence 45678999999999999976543 789873 211 1111 1255554332 5999999999
Q ss_pred CCeEEEEEEEe
Q psy10160 194 DSGEYRCVASN 204 (558)
Q Consensus 194 D~G~Y~C~a~N 204 (558)
|++.|.|....
T Consensus 88 DtA~YYCAr~~ 98 (119)
T d1kxvc_ 88 DTAMYYCKPSL 98 (119)
T ss_dssp GCEEEEEEEEE
T ss_pred CcceEeeeecc
Confidence 99999996544
|
| >d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Fc (IgG) receptor, alpha-3 domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.36 E-value=0.00022 Score=53.12 Aligned_cols=71 Identities=13% Similarity=0.319 Sum_probs=44.3
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCCceEEEccCC------eEEEccCCCCCCeEEEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGVHYRITESN------RLHINQANATDSGEYRC 200 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~~------sL~I~~v~~~D~G~Y~C 200 (558)
||.+.+.... ..++.++|.|.+.|. |.. .++|.+||..+...........++ .|.+ ..+|...|+|
T Consensus 3 PP~V~v~~~~---~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v---~~~~~~~ytC 76 (91)
T d3frua1 3 PPSMRLKARP---GNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEV---KRGDEHHYQC 76 (91)
T ss_dssp CCEEEEEEEE---CSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEE---ETTCGGGEEE
T ss_pred CCEEEEEecC---CCCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEE---CCCCCCEEEE
Confidence 5665543221 245689999999995 543 599999998876432222222333 3444 3456678999
Q ss_pred EEEeC
Q psy10160 201 VASNS 205 (558)
Q Consensus 201 ~a~N~ 205 (558)
.+.-.
T Consensus 77 ~V~H~ 81 (91)
T d3frua1 77 QVEHE 81 (91)
T ss_dssp EEECT
T ss_pred EEEeC
Confidence 98764
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.35 E-value=8.8e-05 Score=57.28 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=27.1
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV 41 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 41 (558)
.+++|.|.+++.+|+|.|+|.|.|..|...
T Consensus 59 ~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~ 88 (105)
T d1cs6a2 59 TTGNLYIAKTEASDLGNYSCFATSHIDFIT 88 (105)
T ss_dssp TTCCEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred CCCEEeecccccccCcEEEEEEEECCCCEE
Confidence 567999999999999999999999888764
|
| >d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.34 E-value=0.00039 Score=54.65 Aligned_cols=69 Identities=19% Similarity=0.240 Sum_probs=43.9
Q ss_pred CCceEeeCCCcEEEEeEeeccCCC---eEEEEEC--CEEec------c-------CCceE---EEc-cCCeEEEccCCCC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIP---QVFWYKD--GQVIE------N-------DGVHY---RIT-ESNRLHINQANAT 193 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p---~i~W~~~--g~~l~------~-------~~~~~---~~~-~~~sL~I~~v~~~ 193 (558)
|....+.+|+.++|.|.....-.+ .+.|+|. |+... . .++++ ... ...+|.|.+++.+
T Consensus 6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~ 85 (117)
T d1dqta_ 6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV 85 (117)
T ss_dssp CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence 455667889999999997543333 3789982 22110 0 01111 111 1237999999999
Q ss_pred CCeEEEEEEEe
Q psy10160 194 DSGEYRCVASN 204 (558)
Q Consensus 194 D~G~Y~C~a~N 204 (558)
|+|.|.|.+..
T Consensus 86 Dsa~YyCa~~~ 96 (117)
T d1dqta_ 86 DTGLYLCKVEL 96 (117)
T ss_dssp GCEEEEEEEEE
T ss_pred cCEeEEEEEec
Confidence 99999998753
|
| >d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.32 E-value=0.0003 Score=52.93 Aligned_cols=74 Identities=12% Similarity=0.181 Sum_probs=47.7
Q ss_pred cEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEcc---CCeEEEccCCCCCCeEEEEEEEeC
Q psy10160 130 VKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITE---SNRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 130 ~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~---~~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
|.+...| ...|..|++|+|.|.... ....+.++|+|.............. ...+.|.+|+.+|+|.|.|.-...
T Consensus 3 PsLsa~P-~~~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~ 79 (96)
T d1nkra1 3 PSLLAHP-GPLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT 79 (96)
T ss_dssp CEEEEES-CSEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred CEEEeeC-CCccCCCCcEEEEECCCC-CCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence 4444555 456789999999999653 3456888887743211000000111 135999999999999999987643
|
| >d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.32 E-value=0.00032 Score=53.83 Aligned_cols=66 Identities=23% Similarity=0.499 Sum_probs=45.7
Q ss_pred CceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------eccC---------CceEEEccC-----CeEEEccCCC
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IEND---------GVHYRITES-----NRLHINQANA 192 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~~---------~~~~~~~~~-----~sL~I~~v~~ 192 (558)
-...+++|++++|.|.++|...- .+.|+|. |+. +..+ ..|+.++.+ -.|.|.+++.
T Consensus 8 G~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~ 87 (117)
T d1c5db1 8 GPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQT 87 (117)
T ss_dssp CCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCG
T ss_pred CCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeecccccccc
Confidence 34567899999999999997654 3788872 222 1111 124444432 1599999999
Q ss_pred CCCeEEEEEE
Q psy10160 193 TDSGEYRCVA 202 (558)
Q Consensus 193 ~D~G~Y~C~a 202 (558)
+|++.|.|-.
T Consensus 88 eDtAvYYCAr 97 (117)
T d1c5db1 88 EDTAIYFCTR 97 (117)
T ss_dssp GGCEEEEEEE
T ss_pred CcceEEEEec
Confidence 9999999953
|
| >d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.31 E-value=0.00043 Score=53.21 Aligned_cols=68 Identities=16% Similarity=0.323 Sum_probs=46.5
Q ss_pred CceEeeCCCcEEEEeEeeccCCCe--EEEEEC--CEEe------ccC---------CceEEEccC-----CeEEEccCCC
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIPQ--VFWYKD--GQVI------END---------GVHYRITES-----NRLHINQANA 192 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p~--i~W~~~--g~~l------~~~---------~~~~~~~~~-----~sL~I~~v~~ 192 (558)
-...+++|++++|.|.++|..... +.|++. |+.+ ... ..|+.+..+ ..|.|.+++.
T Consensus 8 G~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~ 87 (116)
T d7fabh1 8 GPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTA 87 (116)
T ss_dssp CCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccc
Confidence 345678999999999999976553 788872 2211 111 124444332 1599999999
Q ss_pred CCCeEEEEEEEe
Q psy10160 193 TDSGEYRCVASN 204 (558)
Q Consensus 193 ~D~G~Y~C~a~N 204 (558)
+|++.|.|....
T Consensus 88 eDtAvYyCAr~~ 99 (116)
T d7fabh1 88 ADTAVYYCARNL 99 (116)
T ss_dssp GGCEEEEEEEEC
T ss_pred ccceEEEeeeec
Confidence 999999996543
|
| >d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.31 E-value=0.00028 Score=54.24 Aligned_cols=66 Identities=20% Similarity=0.495 Sum_probs=45.2
Q ss_pred CCceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------ecc-C---------CceEEEccC---C--eEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IEN-D---------GVHYRITES---N--RLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~-~---------~~~~~~~~~---~--sL~I~~v 190 (558)
.....+++|+++.|.|.++|.... .+.|.|. |+. +.. . ..|+.++.+ + .|.|.++
T Consensus 7 sg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L 86 (118)
T d1nlbh1 7 SGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSL 86 (118)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeec
Confidence 345667899999999999996544 3788872 221 211 1 124444432 1 4899999
Q ss_pred CCCCCeEEEEE
Q psy10160 191 NATDSGEYRCV 201 (558)
Q Consensus 191 ~~~D~G~Y~C~ 201 (558)
+.+|++.|.|-
T Consensus 87 ~~eDtAvYYCA 97 (118)
T d1nlbh1 87 KNEDTATYFCA 97 (118)
T ss_dssp CGGGCEEEEEE
T ss_pred ccCcceEEEEe
Confidence 99999999994
|
| >d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.31 E-value=0.00037 Score=52.80 Aligned_cols=67 Identities=19% Similarity=0.507 Sum_probs=45.9
Q ss_pred CceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------eccC------------CceEEEccC---C--eEEEcc
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IEND------------GVHYRITES---N--RLHINQ 189 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~~------------~~~~~~~~~---~--sL~I~~ 189 (558)
-...+++|++++|+|.++|.... .+.|.|. |+. +... ..|+.++.+ + .|.|.+
T Consensus 8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~s 87 (109)
T d2ck0h1 8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNN 87 (109)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred CCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccC
Confidence 45667899999999999987554 3788872 221 1110 124544432 2 599999
Q ss_pred CCCCCCeEEEEEEE
Q psy10160 190 ANATDSGEYRCVAS 203 (558)
Q Consensus 190 v~~~D~G~Y~C~a~ 203 (558)
++.+|++.|.|.-.
T Consensus 88 L~~eDTAvYYCAr~ 101 (109)
T d2ck0h1 88 LKTEDTGIYYCVRG 101 (109)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred CCHhHCEEEEEEEc
Confidence 99999999999643
|
| >d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.31 E-value=0.00042 Score=53.93 Aligned_cols=66 Identities=18% Similarity=0.448 Sum_probs=44.9
Q ss_pred ceEeeCCCcEEEEeEeeccC----CCeEEEEEC--CEEec------cC---------CceEEEccC-----CeEEEccCC
Q psy10160 138 TQVFGVGSDISIPCDVDGYP----IPQVFWYKD--GQVIE------ND---------GVHYRITES-----NRLHINQAN 191 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P----~p~i~W~~~--g~~l~------~~---------~~~~~~~~~-----~sL~I~~v~ 191 (558)
...+++|++++|.|.++|.. ...+.|+|. |+.+. .+ ..|+.+..+ ..|.|.+++
T Consensus 9 ~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~ 88 (120)
T d2agjh1 9 PTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLD 88 (120)
T ss_dssp CSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCC
T ss_pred CeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeee
Confidence 34578899999999998853 245789973 22110 00 135555432 259999999
Q ss_pred CCCCeEEEEEEE
Q psy10160 192 ATDSGEYRCVAS 203 (558)
Q Consensus 192 ~~D~G~Y~C~a~ 203 (558)
.+|++.|.|-..
T Consensus 89 ~eDsAvYyCAr~ 100 (120)
T d2agjh1 89 PVDTATYYCART 100 (120)
T ss_dssp GGGCEEEEEEEE
T ss_pred eccceEEeeEec
Confidence 999999999644
|
| >d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-E group [TaxId: 10090]
Probab=97.31 E-value=0.00027 Score=53.71 Aligned_cols=74 Identities=16% Similarity=0.352 Sum_probs=45.7
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCCc--eEEEccCC------eEEEccCCCCCCeE
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGV--HYRITESN------RLHINQANATDSGE 197 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~--~~~~~~~~------sL~I~~v~~~D~G~ 197 (558)
.||.+.+.+... +..|+..+|.|.+.|+ |.. .+.|.+||..+..+.. ...-..++ .|.+ ...+...
T Consensus 4 v~P~V~v~~~~~-~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ 79 (101)
T d1fnga1 4 VAPEVTVLSRSP-VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTF---LPSTDDF 79 (101)
T ss_dssp BCCEEEEEESSC-CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEE---CCCTTCC
T ss_pred cCCeEEEeCCCc-ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEE---cCCCCCE
Confidence 456665543222 4567889999999996 443 6999999998764210 11112233 3444 3345568
Q ss_pred EEEEEEeC
Q psy10160 198 YRCVASNS 205 (558)
Q Consensus 198 Y~C~a~N~ 205 (558)
|+|.+...
T Consensus 80 ytC~V~H~ 87 (101)
T d1fnga1 80 YDCEVDHW 87 (101)
T ss_dssp EEEEEECT
T ss_pred EEEEEEEC
Confidence 99998765
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.28 E-value=6.2e-05 Score=57.22 Aligned_cols=37 Identities=27% Similarity=0.479 Sum_probs=30.1
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~ 48 (558)
.+..|+|..++.+|+|.|+|.|.|..|...|..++|+
T Consensus 60 ~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L~ 96 (97)
T d1cs6a1 60 AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR 96 (97)
T ss_dssp TTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred eeeEEEEecccccCCEEEEEEEEECCCEEEEEEEEEe
Confidence 4567888989999999999999999998765445443
|
| >d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.28 E-value=0.00033 Score=53.88 Aligned_cols=67 Identities=21% Similarity=0.475 Sum_probs=45.7
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------ecc-CC---------ceEEEccC---C--eEEEcc
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IEN-DG---------VHYRITES---N--RLHINQ 189 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~-~~---------~~~~~~~~---~--sL~I~~ 189 (558)
++....+++|+++.|.|.++|...- .+.|.|. |+. +.. .+ .|+.++.+ + .|.|.+
T Consensus 6 esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~s 85 (118)
T d2jelh1 6 QSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELAR 85 (118)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccc
Confidence 3445667899999999999997654 3788872 221 211 11 24444332 1 599999
Q ss_pred CCCCCCeEEEEE
Q psy10160 190 ANATDSGEYRCV 201 (558)
Q Consensus 190 v~~~D~G~Y~C~ 201 (558)
++.+|++.|.|.
T Consensus 86 L~~eDTAvYYCA 97 (118)
T d2jelh1 86 LTSEDSAIYYCA 97 (118)
T ss_dssp CCGGGCEEEEEE
T ss_pred cccCcceeeeEE
Confidence 999999999994
|
| >d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.27 E-value=0.00072 Score=52.03 Aligned_cols=71 Identities=20% Similarity=0.488 Sum_probs=48.2
Q ss_pred CceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------eccC----------CceEEEccCC-----eEEEccCC
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IEND----------GVHYRITESN-----RLHINQAN 191 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~~----------~~~~~~~~~~-----sL~I~~v~ 191 (558)
-...+++|+++.|.|.++|.... .+.|.|. |+. +..+ ..|+.++.+. .|.|.+++
T Consensus 8 G~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~ 87 (118)
T d2fbjh1 8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR 87 (118)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccC
Confidence 35567899999999999997654 3778862 221 1111 1244444322 49999999
Q ss_pred CCCCeEEEEEEEeCCc
Q psy10160 192 ATDSGEYRCVASNSYT 207 (558)
Q Consensus 192 ~~D~G~Y~C~a~N~~G 207 (558)
.+|++.|.|......+
T Consensus 88 ~eDtAvYYCAr~~~~~ 103 (118)
T d2fbjh1 88 SEDTALYYCARLHYYG 103 (118)
T ss_dssp GGGCEEEEEEEEETTT
T ss_pred CCcceEEEeeEecCCC
Confidence 9999999997655443
|
| >d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=0.00032 Score=55.25 Aligned_cols=69 Identities=19% Similarity=0.146 Sum_probs=43.9
Q ss_pred CCceEeeCCCcEEEEeEeeccCCC---eEEEEECC--EE--ec-----cC------CceE-EEcc---CCeEEEccCCCC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIP---QVFWYKDG--QV--IE-----ND------GVHY-RITE---SNRLHINQANAT 193 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p---~i~W~~~g--~~--l~-----~~------~~~~-~~~~---~~sL~I~~v~~~ 193 (558)
|....+.+|+.++|.|.....-.+ .+.|+|.. +. +. .. .+++ .... ..+|.|.+++.+
T Consensus 6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~ 85 (118)
T d1i8lc_ 6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM 85 (118)
T ss_dssp CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence 445667889999999997544333 48899832 11 10 00 0011 0011 126999999999
Q ss_pred CCeEEEEEEEe
Q psy10160 194 DSGEYRCVASN 204 (558)
Q Consensus 194 D~G~Y~C~a~N 204 (558)
|+|.|.|.+..
T Consensus 86 Dsa~YyCa~~~ 96 (118)
T d1i8lc_ 86 DTGLYICKVEL 96 (118)
T ss_dssp GCEEEEEEEEE
T ss_pred CCEEEEEeEec
Confidence 99999998765
|
| >d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.27 E-value=0.0003 Score=54.15 Aligned_cols=65 Identities=26% Similarity=0.552 Sum_probs=44.1
Q ss_pred CceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------eccC-C---------ceEEEcc---CC--eEEEccCC
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IEND-G---------VHYRITE---SN--RLHINQAN 191 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~~-~---------~~~~~~~---~~--sL~I~~v~ 191 (558)
....+++|++++|.|.++|.... .+.|++. |+. +... + .|+.+.. .+ .|.|.+++
T Consensus 8 g~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~ 87 (115)
T d1f3dh1 8 GPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLT 87 (115)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred CCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecC
Confidence 34567899999999999986433 4888872 221 1111 1 2444432 12 49999999
Q ss_pred CCCCeEEEEE
Q psy10160 192 ATDSGEYRCV 201 (558)
Q Consensus 192 ~~D~G~Y~C~ 201 (558)
.+|++.|.|-
T Consensus 88 ~eDtAvYYCA 97 (115)
T d1f3dh1 88 FEDSAVYYCA 97 (115)
T ss_dssp GGGCEEEEEE
T ss_pred cCCcEEEEEe
Confidence 9999999994
|
| >d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.26 E-value=0.00033 Score=54.23 Aligned_cols=65 Identities=22% Similarity=0.451 Sum_probs=45.7
Q ss_pred CceEeeCCCcEEEEeEeeccCCCe--EEEEEC--CEE------eccC---------CceEEEccC---C--eEEEccCCC
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIPQ--VFWYKD--GQV------IEND---------GVHYRITES---N--RLHINQANA 192 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p~--i~W~~~--g~~------l~~~---------~~~~~~~~~---~--sL~I~~v~~ 192 (558)
-...+++|+++.|.|.++|...-. +.|++. |+. +... ..|+.+..+ + .|.|.+++.
T Consensus 8 G~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~ 87 (120)
T d1dn0b1 8 GAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA 87 (120)
T ss_dssp CCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CCcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccc
Confidence 345678999999999999976554 789873 221 1111 135555432 1 499999999
Q ss_pred CCCeEEEEE
Q psy10160 193 TDSGEYRCV 201 (558)
Q Consensus 193 ~D~G~Y~C~ 201 (558)
+|++.|.|.
T Consensus 88 eDtA~YYCA 96 (120)
T d1dn0b1 88 ADTAVYYCA 96 (120)
T ss_dssp GGCEEEEEE
T ss_pred ccccEEEEE
Confidence 999999994
|
| >d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.26 E-value=0.00041 Score=53.28 Aligned_cols=67 Identities=24% Similarity=0.500 Sum_probs=46.0
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCe--EEEEEC--CEE------ec-cC---------CceEEEccC---C--eEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQ--VFWYKD--GQV------IE-ND---------GVHYRITES---N--RLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~--i~W~~~--g~~------l~-~~---------~~~~~~~~~---~--sL~I~~v 190 (558)
.-...+++|+++.|.|.++|..... +.|.|. |+. +. .+ ..|+.++.+ + .|.|.++
T Consensus 7 sG~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L 86 (117)
T d1jnhb1 7 SGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSL 86 (117)
T ss_dssp CCCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeeccccc
Confidence 3455678999999999999976554 788872 211 11 11 124544432 1 4899999
Q ss_pred CCCCCeEEEEEE
Q psy10160 191 NATDSGEYRCVA 202 (558)
Q Consensus 191 ~~~D~G~Y~C~a 202 (558)
+.+|++.|.|..
T Consensus 87 ~~eDTAvYYCAr 98 (117)
T d1jnhb1 87 TSEDSAVYSCSR 98 (117)
T ss_dssp CGGGCEEEEEEE
T ss_pred CCCcceEEEEee
Confidence 999999999954
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.25 E-value=8.6e-05 Score=54.78 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=27.5
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEE
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~ 48 (558)
+.+.|.....+|+|.|+|.|.|..|...+..++|.
T Consensus 49 ~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~v~ 83 (85)
T d1rhfa2 49 SPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVH 83 (85)
T ss_dssp SSEEEEECCCSSCEEEEEEEEETTEEEECCCEEEE
T ss_pred cceEEecCCccccEEEEEEEEcCCCcEEEEEEEEE
Confidence 45677778889999999999999997765444444
|
| >d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.25 E-value=0.00051 Score=53.43 Aligned_cols=71 Identities=18% Similarity=0.407 Sum_probs=48.8
Q ss_pred ecCCceEeeCCCcEEEEeEeeccCCCeEEEEEC--CEEec------cC---------CceEEEc--cCCeEEEccCCCCC
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGYPIPQVFWYKD--GQVIE------ND---------GVHYRIT--ESNRLHINQANATD 194 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~--g~~l~------~~---------~~~~~~~--~~~sL~I~~v~~~D 194 (558)
..|....+.+|+.++|.|...+.-...+.|+|. |+.+. .. ..++... .+.+|.|...+.+|
T Consensus 6 Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~d 85 (112)
T d1fo0b_ 6 QNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQ 85 (112)
T ss_dssp EECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCS
T ss_pred eCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccC
Confidence 345667788999999999977655567999983 32110 00 1233322 23579999999999
Q ss_pred CeEEEEEEEe
Q psy10160 195 SGEYRCVASN 204 (558)
Q Consensus 195 ~G~Y~C~a~N 204 (558)
++.|.|-+.-
T Consensus 86 sa~Y~Ca~~~ 95 (112)
T d1fo0b_ 86 GRTLYCTCSA 95 (112)
T ss_dssp CEEEEEEEES
T ss_pred CccEEEEEec
Confidence 9999998653
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=3.3e-05 Score=59.60 Aligned_cols=38 Identities=29% Similarity=0.546 Sum_probs=31.1
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEEe
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQA 49 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~~ 49 (558)
..+.|.|.+++.+|+|.|+|.|.|..|... +..+.|.+
T Consensus 64 ~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~v~v 102 (104)
T d1nbqa2 64 TTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 102 (104)
T ss_dssp TTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred cccceEECCCCcccCcEEEEEEEECCCceEEEEEEEEEE
Confidence 456899999999999999999999999874 45555443
|
| >d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.23 E-value=0.00046 Score=52.74 Aligned_cols=68 Identities=21% Similarity=0.463 Sum_probs=46.5
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCCe--EEEEE--CCEE------eccC-C---------ceEEEccC---C--eEEEcc
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIPQ--VFWYK--DGQV------IEND-G---------VHYRITES---N--RLHINQ 189 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p~--i~W~~--~g~~------l~~~-~---------~~~~~~~~---~--sL~I~~ 189 (558)
++....+++|+++.|.|.++|..... +.|.| .|+. +..+ + .|+.++.+ + .|.|.+
T Consensus 6 esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~s 85 (116)
T d1mjuh1 6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS 85 (116)
T ss_dssp CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred eECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccc
Confidence 44566788999999999999976544 77887 2221 1111 1 24444322 1 589999
Q ss_pred CCCCCCeEEEEEE
Q psy10160 190 ANATDSGEYRCVA 202 (558)
Q Consensus 190 v~~~D~G~Y~C~a 202 (558)
++.+|++.|.|-.
T Consensus 86 L~~eDtAvYYCAr 98 (116)
T d1mjuh1 86 LTSDDSAVYYCAN 98 (116)
T ss_dssp CCGGGCEEEEEEE
T ss_pred cCCCCceEEEEcc
Confidence 9999999999953
|
| >d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.00058 Score=51.14 Aligned_cols=74 Identities=20% Similarity=0.351 Sum_probs=45.2
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCCc-eEEEccCCe---EEEccCCCCCCeEEEEEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGV-HYRITESNR---LHINQANATDSGEYRCVA 202 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~-~~~~~~~~s---L~I~~v~~~D~G~Y~C~a 202 (558)
||.+.+.... ..|+.++|.|.+.|. |.. .+.|.+||..+..... ......+++ .....+..+|...|+|.+
T Consensus 3 PP~V~v~~~~---~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V 79 (94)
T d1t7va1 3 PPSVVVTSHQ---APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHV 79 (94)
T ss_dssp CCEEEEEEEE---CTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEE
T ss_pred CCEeEEeccC---CCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEE
Confidence 5666553222 357899999999995 543 5899999987754211 111122232 222334456667899998
Q ss_pred EeC
Q psy10160 203 SNS 205 (558)
Q Consensus 203 ~N~ 205 (558)
...
T Consensus 80 ~H~ 82 (94)
T d1t7va1 80 QHS 82 (94)
T ss_dssp EET
T ss_pred EEC
Confidence 765
|
| >d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.22 E-value=0.00094 Score=51.34 Aligned_cols=69 Identities=23% Similarity=0.434 Sum_probs=47.6
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCCe--EEEEEC--CEE------ecc-C---------CceEEEccC---C--eEEEcc
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIPQ--VFWYKD--GQV------IEN-D---------GVHYRITES---N--RLHINQ 189 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p~--i~W~~~--g~~------l~~-~---------~~~~~~~~~---~--sL~I~~ 189 (558)
+.....+++|++++|.|.++|..... +.|+|. |+. +.. . ..|+.++.+ + .|.|.+
T Consensus 5 esg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~s 84 (117)
T d1um5h1 5 QSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSS 84 (117)
T ss_dssp ECCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccc
Confidence 34466788999999999999976554 789873 221 221 1 124544332 1 499999
Q ss_pred CCCCCCeEEEEEEE
Q psy10160 190 ANATDSGEYRCVAS 203 (558)
Q Consensus 190 v~~~D~G~Y~C~a~ 203 (558)
++.+|++.|.|...
T Consensus 85 L~~eDtAvYYCAr~ 98 (117)
T d1um5h1 85 LTSEDSAVYYCARS 98 (117)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred cCCCcceEEEEeec
Confidence 99999999999643
|
| >d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.22 E-value=0.00061 Score=52.23 Aligned_cols=68 Identities=22% Similarity=0.524 Sum_probs=46.3
Q ss_pred CceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CE------Eecc-C---------CceEEEccC---C--eEEEccCC
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQ------VIEN-D---------GVHYRITES---N--RLHINQAN 191 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~------~l~~-~---------~~~~~~~~~---~--sL~I~~v~ 191 (558)
-...+++|+++.|.|.++|.... .+.|.|. |+ .+.. + ..|+.++.+ + .|.+.+++
T Consensus 8 G~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~ 87 (117)
T d1jpth1 8 GGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLR 87 (117)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccC
Confidence 35567899999999999997644 3778873 22 1211 1 124444332 1 48999999
Q ss_pred CCCCeEEEEEEEe
Q psy10160 192 ATDSGEYRCVASN 204 (558)
Q Consensus 192 ~~D~G~Y~C~a~N 204 (558)
.+|++.|.|....
T Consensus 88 ~eDTAvYYCAr~~ 100 (117)
T d1jpth1 88 AEDTAVYYCARDT 100 (117)
T ss_dssp GGGCEEEEEEEEC
T ss_pred CCCceEEEEeecC
Confidence 9999999996544
|
| >d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.00082 Score=50.70 Aligned_cols=75 Identities=15% Similarity=0.277 Sum_probs=46.0
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEE----ccCCeEEEccCCCCCCeEEEEEEEe
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRI----TESNRLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~----~~~~sL~I~~v~~~D~G~Y~C~a~N 204 (558)
.|.+...|.. .|..|++|+|.|+... +.-.+.++|+|............ .......|.+|+.+|+|.|+|.-..
T Consensus 4 kPsLsa~P~~-~v~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~ 81 (98)
T d1ugna2 4 KPTLSAQPSP-VVNSGGNVTLQCDSQV-AFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD 81 (98)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECSS-CCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEEC
T ss_pred CCEEEeeCCC-ccCCCCcEEEEeCCCC-CCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEc
Confidence 4556666644 5889999999998643 34457778877643321100000 0113599999999999999998654
Q ss_pred C
Q psy10160 205 S 205 (558)
Q Consensus 205 ~ 205 (558)
.
T Consensus 82 ~ 82 (98)
T d1ugna2 82 S 82 (98)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.20 E-value=0.0004 Score=53.06 Aligned_cols=65 Identities=17% Similarity=0.458 Sum_probs=44.9
Q ss_pred CceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------eccC----------CceEEEccC---C--eEEEccCC
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IEND----------GVHYRITES---N--RLHINQAN 191 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~~----------~~~~~~~~~---~--sL~I~~v~ 191 (558)
-...+++|++++|.|.++|.... .+.|+|. |+. +... ..|+.++.+ + .|.|.+++
T Consensus 8 G~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~ 87 (114)
T d1indh1 8 GGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLR 87 (114)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeec
Confidence 34567899999999999997544 3778872 221 2111 124444432 2 49999999
Q ss_pred CCCCeEEEEE
Q psy10160 192 ATDSGEYRCV 201 (558)
Q Consensus 192 ~~D~G~Y~C~ 201 (558)
.+|++.|.|.
T Consensus 88 ~eDtAvYYCA 97 (114)
T d1indh1 88 SEDTALYFCA 97 (114)
T ss_dssp GGGCEEEEEE
T ss_pred cCcccEEEEC
Confidence 9999999995
|
| >d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.19 E-value=0.00055 Score=53.09 Aligned_cols=68 Identities=19% Similarity=0.446 Sum_probs=46.1
Q ss_pred CCceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEEe------ccC----------CceEEEccC---C--eEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQVI------END----------GVHYRITES---N--RLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~l------~~~----------~~~~~~~~~---~--sL~I~~v 190 (558)
+....+++|++++|.|.++|.... .+.|+|. |+.+ ... ..|+.+..+ + .|.|.++
T Consensus 7 sg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l 86 (120)
T d1pg7x1 7 SGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRL 86 (120)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred ECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEcccccc
Confidence 345568899999999999986533 4788872 3211 111 124444321 1 5999999
Q ss_pred CCCCCeEEEEEEE
Q psy10160 191 NATDSGEYRCVAS 203 (558)
Q Consensus 191 ~~~D~G~Y~C~a~ 203 (558)
+.+|++.|.|...
T Consensus 87 ~~eDtA~YYCAr~ 99 (120)
T d1pg7x1 87 TSNDSAVYYCARE 99 (120)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CCCcceEEEeeec
Confidence 9999999999754
|
| >d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.17 E-value=0.00074 Score=52.09 Aligned_cols=68 Identities=25% Similarity=0.557 Sum_probs=46.4
Q ss_pred CCceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------ecc-C---------CceEEEccC---C--eEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IEN-D---------GVHYRITES---N--RLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~-~---------~~~~~~~~~---~--sL~I~~v 190 (558)
.-...+++|+++.|.|.++|.... .+.|+|. |+. +.. + ..|+.++.+ + .|.|.++
T Consensus 7 sg~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL 86 (119)
T d1rz7h1 7 SGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSL 86 (119)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeecc
Confidence 345667899999999999997654 3788772 211 111 1 124444332 2 5999999
Q ss_pred CCCCCeEEEEEEE
Q psy10160 191 NATDSGEYRCVAS 203 (558)
Q Consensus 191 ~~~D~G~Y~C~a~ 203 (558)
+.+|++.|.|...
T Consensus 87 ~~eDTAvYYCAr~ 99 (119)
T d1rz7h1 87 RSEDTAVYYCAAD 99 (119)
T ss_dssp CGGGCEEEEEEEC
T ss_pred CcccceEEEEeec
Confidence 9999999999643
|
| >d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.16 E-value=0.00071 Score=52.01 Aligned_cols=68 Identities=22% Similarity=0.450 Sum_probs=45.0
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCC--eEEEEE--CCEEe------ccC----------CceEEEccC-----CeEEEcc
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIP--QVFWYK--DGQVI------END----------GVHYRITES-----NRLHINQ 189 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~--~g~~l------~~~----------~~~~~~~~~-----~sL~I~~ 189 (558)
++....+++|++++|.|.++|...- .+.|.| .|+.+ ... ..|+.++.+ ..|.|.+
T Consensus 6 qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~ 85 (117)
T d1mfah1 6 QSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSS 85 (117)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecc
Confidence 3456677899999999999986433 367876 23211 111 113443322 1599999
Q ss_pred CCCCCCeEEEEEE
Q psy10160 190 ANATDSGEYRCVA 202 (558)
Q Consensus 190 v~~~D~G~Y~C~a 202 (558)
++.+|++.|.|..
T Consensus 86 L~~eDtAvYYCAr 98 (117)
T d1mfah1 86 LTSEDSAVYYCTR 98 (117)
T ss_dssp CCGGGCEEEEEEE
T ss_pred cCCCcceEEEEec
Confidence 9999999999953
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.00013 Score=53.64 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=25.5
Q ss_pred EEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEE
Q psy10160 16 LTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQ 48 (558)
Q Consensus 16 L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~ 48 (558)
+.|.+++.+|+|.|+|.|+|..|... ++.|.|.
T Consensus 49 ~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~ 82 (84)
T d2oz4a3 49 GESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 82 (84)
T ss_dssp TSCEECCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eeeeccccCCCCEEEEEEEcCCCEEEEEEEEEEE
Confidence 34567899999999999999999763 4444443
|
| >d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.14 E-value=0.00059 Score=52.78 Aligned_cols=68 Identities=19% Similarity=0.466 Sum_probs=47.0
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCe--EEEEEC--CEE------eccC----------CceEEEccC---C--eEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQ--VFWYKD--GQV------IEND----------GVHYRITES---N--RLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~--i~W~~~--g~~------l~~~----------~~~~~~~~~---~--sL~I~~v 190 (558)
+....+++|+++.|.|.++|...-. +.|+|. |+. +... ..|+.++.+ + .|.|.++
T Consensus 8 sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L 87 (122)
T d1vgeh1 8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSL 87 (122)
T ss_dssp CCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred cCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeeccccc
Confidence 4566789999999999999976443 788872 211 1111 124444332 1 4999999
Q ss_pred CCCCCeEEEEEEE
Q psy10160 191 NATDSGEYRCVAS 203 (558)
Q Consensus 191 ~~~D~G~Y~C~a~ 203 (558)
+.+|++.|.|...
T Consensus 88 ~~eDtA~YYCAr~ 100 (122)
T d1vgeh1 88 RPEDTAVYYCARD 100 (122)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CCCcceEEEEeec
Confidence 9999999999654
|
| >d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.12 E-value=0.00069 Score=52.74 Aligned_cols=68 Identities=18% Similarity=0.479 Sum_probs=46.5
Q ss_pred CceEeeCCCcEEEEeEeeccCCCe--EEEEEC--CEE------eccC----------CceEEEccC---C--eEEEccCC
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIPQ--VFWYKD--GQV------IEND----------GVHYRITES---N--RLHINQAN 191 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p~--i~W~~~--g~~------l~~~----------~~~~~~~~~---~--sL~I~~v~ 191 (558)
-...+++|+++.|.|.++|..... +.|.|. |+. +..+ ..|+.++.+ + .|.|.+++
T Consensus 7 G~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~ 86 (124)
T d1zvya1 7 GGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVK 86 (124)
T ss_dssp CCEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceecccc
Confidence 345678999999999999976553 788873 221 2111 124444332 1 48999999
Q ss_pred CCCCeEEEEEEEe
Q psy10160 192 ATDSGEYRCVASN 204 (558)
Q Consensus 192 ~~D~G~Y~C~a~N 204 (558)
.+|++.|.|....
T Consensus 87 ~eDtAvYYCAr~~ 99 (124)
T d1zvya1 87 SEDTAIYTCGATR 99 (124)
T ss_dssp GGGCEEEEEEECS
T ss_pred CCcceEEEEeecc
Confidence 9999999997543
|
| >d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.12 E-value=0.00051 Score=52.96 Aligned_cols=66 Identities=27% Similarity=0.547 Sum_probs=45.3
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCe--EEEEEC--CEE------ecc-CC---------ceEEEccC---C--eEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQ--VFWYKD--GQV------IEN-DG---------VHYRITES---N--RLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~--i~W~~~--g~~------l~~-~~---------~~~~~~~~---~--sL~I~~v 190 (558)
.-...+++|+++.|.|.++|..... +.|+|. |+. +.. ++ .|+.++.+ + .|.|.++
T Consensus 7 sG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL 86 (119)
T d1eapb1 7 SGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSL 86 (119)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecc
Confidence 4456678999999999999975443 788873 221 221 11 24444321 1 5999999
Q ss_pred CCCCCeEEEEE
Q psy10160 191 NATDSGEYRCV 201 (558)
Q Consensus 191 ~~~D~G~Y~C~ 201 (558)
+.+|++.|.|.
T Consensus 87 ~~eDTAvYYCA 97 (119)
T d1eapb1 87 TSEDSAVYFCK 97 (119)
T ss_dssp CGGGCEEEEEE
T ss_pred cCCcceEEEEE
Confidence 99999999994
|
| >d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: B and T lymphocyte attenuator, Btla species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.12 E-value=0.0024 Score=44.87 Aligned_cols=80 Identities=26% Similarity=0.380 Sum_probs=53.5
Q ss_pred ceEeeCCCcEEEEeEeec-cCCCeEEEEE-CCE---EeccCCce-EEEccCC-----eEEEccCCCCCCeEEEEEEEeCC
Q psy10160 138 TQVFGVGSDISIPCDVDG-YPIPQVFWYK-DGQ---VIENDGVH-YRITESN-----RLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g-~P~p~i~W~~-~g~---~l~~~~~~-~~~~~~~-----sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
...+-.|+...|.|.+.- --.|.++|-| +|+ ++.....+ ..-.+++ .|.+..+..+|.|.|+|.|.-.-
T Consensus 12 ~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s 91 (104)
T d1xaua_ 12 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS 91 (104)
T ss_dssp EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred eeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCCh
Confidence 455778999999999864 3578899986 443 22211111 1112222 48899999999999999998665
Q ss_pred cee-eEEEEEEE
Q psy10160 207 TSD-ENAVTIRV 217 (558)
Q Consensus 207 G~~-~~~~~l~V 217 (558)
|-. ++++++.|
T Consensus 92 ~vieSHSvti~V 103 (104)
T d1xaua_ 92 QVINSHSVTIHV 103 (104)
T ss_dssp EEEECCCEEEEE
T ss_pred hheecceEEEEe
Confidence 554 46666655
|
| >d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]
Probab=97.11 E-value=0.00053 Score=52.59 Aligned_cols=68 Identities=24% Similarity=0.514 Sum_probs=46.0
Q ss_pred CceEeeCCCcEEEEeEeeccCCCe--EEEEEC--CEE------eccC---------CceEEEccC---C--eEEEccCCC
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIPQ--VFWYKD--GQV------IEND---------GVHYRITES---N--RLHINQANA 192 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p~--i~W~~~--g~~------l~~~---------~~~~~~~~~---~--sL~I~~v~~ 192 (558)
-...+++|+++.|.|.++|...-. +.|.|. |+. +..+ ..|+.++.+ + .|.|.+++.
T Consensus 8 G~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~ 87 (116)
T d1a2yb_ 8 GPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHT 87 (116)
T ss_dssp CCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred CCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeee
Confidence 345678999999999999976544 778873 221 1111 124444332 1 599999999
Q ss_pred CCCeEEEEEEEe
Q psy10160 193 TDSGEYRCVASN 204 (558)
Q Consensus 193 ~D~G~Y~C~a~N 204 (558)
+|++.|.|--..
T Consensus 88 eDTAvYYCAr~~ 99 (116)
T d1a2yb_ 88 DDTARYYCARER 99 (116)
T ss_dssp GGCEEEEEEEES
T ss_pred ccceEEEEEEeC
Confidence 999999996543
|
| >d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 epsilon chain ectodomain fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.10 E-value=0.00031 Score=50.61 Aligned_cols=53 Identities=25% Similarity=0.530 Sum_probs=40.6
Q ss_pred eCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCC-CCCeEEEEEEE
Q psy10160 142 GVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANA-TDSGEYRCVAS 203 (558)
Q Consensus 142 ~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~-~D~G~Y~C~a~ 203 (558)
..|.+|+|+|+..+. -.|.|.+++..++... +..|.+.+.+. +|+|.|.|...
T Consensus 12 ISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~-------~~~L~L~~FSE~e~SGyY~C~~~ 65 (100)
T d1jbja2 12 ISGTSVELTCPLDSD--ENLKWEKNGQELPQKH-------DKHLVLQDFSEVEDSGYYVCYTP 65 (100)
T ss_dssp EETTEEEEECSSCCC--TTCEEEETTEEECSCC-------CSEEEEESCCTTTSCEEEEEECS
T ss_pred EeCCEEEEECCCCCC--CceEEeeccccCCCCC-------CcEEEEccccccccCcceEEecC
Confidence 459999999997653 3599999999887533 23577778655 89999999643
|
| >d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.10 E-value=0.00066 Score=53.07 Aligned_cols=69 Identities=22% Similarity=0.439 Sum_probs=46.3
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------ec-cC---------CceEEEccC---C--eEEEcc
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IE-ND---------GVHYRITES---N--RLHINQ 189 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~-~~---------~~~~~~~~~---~--sL~I~~ 189 (558)
++-...+++|++++|.|.++|...- .+.|.|. |+. +. .. ..|+.++.+ + .|.|.+
T Consensus 6 esg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~s 85 (125)
T d1rihh1 6 QSGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNS 85 (125)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeec
Confidence 3455678899999999999986543 3778762 221 11 11 124444322 1 489999
Q ss_pred CCCCCCeEEEEEEE
Q psy10160 190 ANATDSGEYRCVAS 203 (558)
Q Consensus 190 v~~~D~G~Y~C~a~ 203 (558)
++.+|++.|.|-..
T Consensus 86 L~~eDtAvYYCAR~ 99 (125)
T d1rihh1 86 LTSEDSAVYYCARE 99 (125)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred cCcccceEEEEeee
Confidence 99999999999754
|
| >d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]
Probab=97.10 E-value=0.00073 Score=52.00 Aligned_cols=67 Identities=21% Similarity=0.457 Sum_probs=44.6
Q ss_pred CCceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------ecc-C---------CceEEEccC---C--eEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IEN-D---------GVHYRITES---N--RLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~-~---------~~~~~~~~~---~--sL~I~~v 190 (558)
.-...+++|+++.|.|.++|...- .+.|.|. |+. +.. + ..|+.+..+ + .|.|.++
T Consensus 7 sG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L 86 (118)
T d1ct8b1 7 SGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSL 86 (118)
T ss_dssp CCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEeccccc
Confidence 345678899999999999996533 3778762 221 111 1 113333322 1 5899999
Q ss_pred CCCCCeEEEEEE
Q psy10160 191 NATDSGEYRCVA 202 (558)
Q Consensus 191 ~~~D~G~Y~C~a 202 (558)
+.+|++.|.|-.
T Consensus 87 ~~eDtAvYYCAr 98 (118)
T d1ct8b1 87 TTEDSAIYYCAR 98 (118)
T ss_dssp CGGGCEEEEEEE
T ss_pred CCCcceEEEEee
Confidence 999999999954
|
| >d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=97.09 E-value=0.00061 Score=51.49 Aligned_cols=76 Identities=14% Similarity=0.274 Sum_probs=45.3
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeecc-CC-CeEEEEECCEEeccCC--ceEEEccCCeE---EEccCCCCCCeEEEEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGY-PI-PQVFWYKDGQVIENDG--VHYRITESNRL---HINQANATDSGEYRCV 201 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P~-p~i~W~~~g~~l~~~~--~~~~~~~~~sL---~I~~v~~~D~G~Y~C~ 201 (558)
||.+.+.+.. ....|+..+|.|.+.|. |. ..++|.+||..+..+. ....-..+++. ..-.+..+|...|+|.
T Consensus 5 ~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~ 83 (99)
T d1uvqa1 5 VPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCK 83 (99)
T ss_dssp CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEE
T ss_pred CCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEE
Confidence 5555543222 24567889999999997 33 3599999999886421 11112233321 1122344566689999
Q ss_pred EEeC
Q psy10160 202 ASNS 205 (558)
Q Consensus 202 a~N~ 205 (558)
+...
T Consensus 84 V~H~ 87 (99)
T d1uvqa1 84 VEHW 87 (99)
T ss_dssp EECT
T ss_pred EEeC
Confidence 9765
|
| >d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 epsilon chain ectodomain fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.00044 Score=49.20 Aligned_cols=74 Identities=18% Similarity=0.344 Sum_probs=49.9
Q ss_pred eCCCcEEEEeEeeccCCCeEEEEECCEEeccCCc-eEEEccCCeEEEccCCC-CCCeEEEEEEEeC-CceeeEEEEEEE
Q psy10160 142 GVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGV-HYRITESNRLHINQANA-TDSGEYRCVASNS-YTSDENAVTIRV 217 (558)
Q Consensus 142 ~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~-~~~~~~~~sL~I~~v~~-~D~G~Y~C~a~N~-~G~~~~~~~l~V 217 (558)
..|.+|.|+|+-. +...|.|.+++..+...+. .........|.+.+.+. +++|.|.|.+... ......-+.|.+
T Consensus 8 ISGTtV~LTCP~~--~~~~i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~~~~~~~~~~LYLKA 84 (91)
T d1xiwa_ 8 ISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 84 (91)
T ss_dssp EETTEEEEECSSC--TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGCCEEEEEEE
T ss_pred EeCCEEEEECCCC--CCCceeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcCCCCCCCcceEEEEEe
Confidence 3599999999742 4467999999988875431 11122334688888876 8999999988543 233344455555
|
| >d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.08 E-value=0.001 Score=51.40 Aligned_cols=65 Identities=20% Similarity=0.586 Sum_probs=44.8
Q ss_pred ceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------eccC----------CceEEEccC---C--eEEEccCCC
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IEND----------GVHYRITES---N--RLHINQANA 192 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~~----------~~~~~~~~~---~--sL~I~~v~~ 192 (558)
...+++|+++.|.|.++|...- .+.|.|. |+. +..+ ..|+.++.+ + .|.|.+++.
T Consensus 9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~ 88 (121)
T d2p49b1 9 GGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKP 88 (121)
T ss_dssp CEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCG
T ss_pred CceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccc
Confidence 4567899999999999986543 3778872 211 1111 124555432 1 499999999
Q ss_pred CCCeEEEEEE
Q psy10160 193 TDSGEYRCVA 202 (558)
Q Consensus 193 ~D~G~Y~C~a 202 (558)
+|++.|.|..
T Consensus 89 eDtAvYYCAr 98 (121)
T d2p49b1 89 EDTATYYCAA 98 (121)
T ss_dssp GGCEEEEEEE
T ss_pred cceeEEeeec
Confidence 9999999964
|
| >d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.07 E-value=0.00094 Score=50.31 Aligned_cols=64 Identities=20% Similarity=0.517 Sum_probs=39.4
Q ss_pred CCCcEEEEeEeeccCCC--eEEEEEC--CEEe------ccC----------CceEEEccCC-----eEEEccCCCCCCeE
Q psy10160 143 VGSDISIPCDVDGYPIP--QVFWYKD--GQVI------END----------GVHYRITESN-----RLHINQANATDSGE 197 (558)
Q Consensus 143 ~G~~v~L~C~~~g~P~p--~i~W~~~--g~~l------~~~----------~~~~~~~~~~-----sL~I~~v~~~D~G~ 197 (558)
+|++++|.|.++|...- .+.|+|. |+.+ ..+ ..|+.++.+. .|.|.+++.+|++.
T Consensus 1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv 80 (103)
T d1oari_ 1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV 80 (103)
T ss_dssp CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence 58999999999997544 4788873 3221 111 1355554432 59999999999999
Q ss_pred EEEEEEeCC
Q psy10160 198 YRCVASNSY 206 (558)
Q Consensus 198 Y~C~a~N~~ 206 (558)
|.|......
T Consensus 81 YYCAr~~~~ 89 (103)
T d1oari_ 81 YYCARMWYY 89 (103)
T ss_dssp EEEEEEECS
T ss_pred EEeEEECCC
Confidence 999765443
|
| >d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.07 E-value=0.00075 Score=52.51 Aligned_cols=67 Identities=21% Similarity=0.520 Sum_probs=46.2
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCCe--EEEEEC--CEE------ecc-C---------CceEEEccC---C--eEEEcc
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIPQ--VFWYKD--GQV------IEN-D---------GVHYRITES---N--RLHINQ 189 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p~--i~W~~~--g~~------l~~-~---------~~~~~~~~~---~--sL~I~~ 189 (558)
++....+++|+++.|.|.++|...-. +.|.|. |+. +.. + ..|+.++.+ + .|.|.+
T Consensus 6 esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~ 85 (127)
T d1n0xh1 6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS 85 (127)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEc
Confidence 44566788999999999999975543 788872 321 221 1 124444432 1 489999
Q ss_pred CCCCCCeEEEEE
Q psy10160 190 ANATDSGEYRCV 201 (558)
Q Consensus 190 v~~~D~G~Y~C~ 201 (558)
++.+|++.|.|.
T Consensus 86 L~~eDtAvYYCA 97 (127)
T d1n0xh1 86 LRSADTAVYYCA 97 (127)
T ss_dssp CCGGGCEEEEEE
T ss_pred cCCCCceEEEEE
Confidence 999999999995
|
| >d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.07 E-value=0.0018 Score=50.03 Aligned_cols=69 Identities=19% Similarity=0.496 Sum_probs=46.4
Q ss_pred CceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------eccC----------CceEEEccC---C--eEEEccCC
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IEND----------GVHYRITES---N--RLHINQAN 191 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~~----------~~~~~~~~~---~--sL~I~~v~ 191 (558)
-...+++|+++.|.|.++|...- .+.|+|. |+. +... ..|+.+..+ + .|.|.+++
T Consensus 8 G~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~ 87 (123)
T d1mqkh_ 8 GGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLK 87 (123)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeec
Confidence 34567899999999999997544 3788872 221 2111 124444332 2 49999999
Q ss_pred CCCCeEEEEEEEeC
Q psy10160 192 ATDSGEYRCVASNS 205 (558)
Q Consensus 192 ~~D~G~Y~C~a~N~ 205 (558)
.+|++.|.|-....
T Consensus 88 ~eDtAvYYCAr~~~ 101 (123)
T d1mqkh_ 88 SEDTAMYYCVRHEY 101 (123)
T ss_dssp GGGCEEEEEEEEET
T ss_pred cCcccceeEEecCC
Confidence 99999999965543
|
| >d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.07 E-value=0.00042 Score=52.42 Aligned_cols=63 Identities=22% Similarity=0.564 Sum_probs=41.3
Q ss_pred EeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------eccC---------CceEEEccCC-----eEEEccCCCCCC
Q psy10160 140 VFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IEND---------GVHYRITESN-----RLHINQANATDS 195 (558)
Q Consensus 140 ~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~~---------~~~~~~~~~~-----sL~I~~v~~~D~ 195 (558)
.|++|++++|.|.++|.-.- .+.|++. |+. +..+ ..|+.++.+. .|.|.+++.+|+
T Consensus 4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt 83 (107)
T d1sjva_ 4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT 83 (107)
T ss_dssp CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence 46789999999999986432 3778873 221 1111 1255554322 599999999999
Q ss_pred eEEEEEE
Q psy10160 196 GEYRCVA 202 (558)
Q Consensus 196 G~Y~C~a 202 (558)
+.|.|..
T Consensus 84 AvYyCA~ 90 (107)
T d1sjva_ 84 AVYYCYT 90 (107)
T ss_dssp SEEEEEE
T ss_pred eeeeEec
Confidence 9999953
|
| >d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.06 E-value=0.00053 Score=53.22 Aligned_cols=65 Identities=22% Similarity=0.501 Sum_probs=43.9
Q ss_pred ceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------eccC----------CceEEEcc---CC--eEEEccCCC
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IEND----------GVHYRITE---SN--RLHINQANA 192 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~~----------~~~~~~~~---~~--sL~I~~v~~ 192 (558)
...+++|++++|.|.++|...- .+.|++. |+. +... ..|+.+.. .+ .|.|.+++.
T Consensus 9 ~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~ 88 (119)
T d1qnzh_ 9 AELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTS 88 (119)
T ss_dssp CCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECG
T ss_pred CceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCc
Confidence 4467899999999999986432 3788872 321 1111 12444432 12 499999999
Q ss_pred CCCeEEEEEE
Q psy10160 193 TDSGEYRCVA 202 (558)
Q Consensus 193 ~D~G~Y~C~a 202 (558)
+|++.|.|-.
T Consensus 89 eDsAvYYCA~ 98 (119)
T d1qnzh_ 89 DDSAVYYCAI 98 (119)
T ss_dssp GGCEEEEEEE
T ss_pred cceeEEEEEE
Confidence 9999999954
|
| >d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.06 E-value=0.003 Score=49.32 Aligned_cols=68 Identities=19% Similarity=0.509 Sum_probs=46.3
Q ss_pred CceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------eccC----------CceEEEccCC-----eEEEccCC
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IEND----------GVHYRITESN-----RLHINQAN 191 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~~----------~~~~~~~~~~-----sL~I~~v~ 191 (558)
-...+++|+++.|.|.++|...- .+.|+|. |+. +... ..|+.++.+. .|.|.+++
T Consensus 8 G~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~ 87 (135)
T d1ieha_ 8 GGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLK 87 (135)
T ss_dssp CCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCC
T ss_pred CCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeC
Confidence 34567899999999999997543 3778862 211 2111 1244444321 59999999
Q ss_pred CCCCeEEEEEEEe
Q psy10160 192 ATDSGEYRCVASN 204 (558)
Q Consensus 192 ~~D~G~Y~C~a~N 204 (558)
.+|++.|.|....
T Consensus 88 ~eDTAvYYCAr~~ 100 (135)
T d1ieha_ 88 SEDTAVYYCAKYS 100 (135)
T ss_dssp SSSCEEEEEEEBS
T ss_pred cccceeeEEEEec
Confidence 9999999997554
|
| >d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.04 E-value=0.0015 Score=50.72 Aligned_cols=69 Identities=20% Similarity=0.454 Sum_probs=46.3
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEEe------cc-C---------CceEEEccC---C--eEEEcc
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQVI------EN-D---------GVHYRITES---N--RLHINQ 189 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~l------~~-~---------~~~~~~~~~---~--sL~I~~ 189 (558)
+.....+++|+.++|.|.++|...- .+.|+|. |+.+ .. + ..|+.+..+ + .|.|.+
T Consensus 6 esg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~ 85 (121)
T d1j05b_ 6 QSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTS 85 (121)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccc
Confidence 3445668899999999999986433 4788872 3211 11 1 124444321 2 499999
Q ss_pred CCCCCCeEEEEEEE
Q psy10160 190 ANATDSGEYRCVAS 203 (558)
Q Consensus 190 v~~~D~G~Y~C~a~ 203 (558)
++.+|++.|.|...
T Consensus 86 L~~eDtAvYYCAr~ 99 (121)
T d1j05b_ 86 LTSEDTAVYYCAPF 99 (121)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred cCcCcceEEEeEee
Confidence 99999999999654
|
| >d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.03 E-value=0.00096 Score=51.80 Aligned_cols=67 Identities=19% Similarity=0.438 Sum_probs=45.1
Q ss_pred CCceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------ecc-C---------CceEEEccCC-----eEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IEN-D---------GVHYRITESN-----RLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~-~---------~~~~~~~~~~-----sL~I~~v 190 (558)
+....+++|+++.|.|.++|...- .+.|+|. |+. +.. + ..|+.++.+. .|.|.++
T Consensus 7 sg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L 86 (124)
T d2b1hh1 7 SGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSL 86 (124)
T ss_dssp CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSC
T ss_pred ECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecc
Confidence 445677899999999999997643 3778872 211 111 1 1244333221 5899999
Q ss_pred CCCCCeEEEEEE
Q psy10160 191 NATDSGEYRCVA 202 (558)
Q Consensus 191 ~~~D~G~Y~C~a 202 (558)
+.+|++.|.|..
T Consensus 87 ~~eDTA~YYCAR 98 (124)
T d2b1hh1 87 KPSDTALYYCAR 98 (124)
T ss_dssp CGGGCEEEEEEE
T ss_pred ccccceEEEEee
Confidence 999999999953
|
| >d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=97.02 E-value=0.00063 Score=51.23 Aligned_cols=64 Identities=14% Similarity=0.248 Sum_probs=37.8
Q ss_pred eCCCcEEEEeEeeccCCC--eEEEEECCEEeccCCc--eEEEccCCe---EEEccCCCCCCeEEEEEEEeC
Q psy10160 142 GVGSDISIPCDVDGYPIP--QVFWYKDGQVIENDGV--HYRITESNR---LHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 142 ~~G~~v~L~C~~~g~P~p--~i~W~~~g~~l~~~~~--~~~~~~~~s---L~I~~v~~~D~G~Y~C~a~N~ 205 (558)
..|+..+|.|.+.|.-++ .+.|.+||.++..+.. ......+++ ...-.+..++...|+|.+...
T Consensus 14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~ 84 (97)
T d1uvqb1 14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHP 84 (97)
T ss_dssp -----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECT
T ss_pred cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeC
Confidence 346778999999997443 5899999988754211 111123332 222345566778999998765
|
| >d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.02 E-value=0.0011 Score=51.45 Aligned_cols=68 Identities=24% Similarity=0.452 Sum_probs=46.3
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCCe--EEEEE--CCEE------eccC----------CceEEEccC---C--eEEEcc
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIPQ--VFWYK--DGQV------IEND----------GVHYRITES---N--RLHINQ 189 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p~--i~W~~--~g~~------l~~~----------~~~~~~~~~---~--sL~I~~ 189 (558)
++-...+++|+++.|.|.++|...-. +.|.| .|+. +..+ ..|+.++.+ + .|.|.+
T Consensus 5 esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~ 84 (126)
T d1lmka1 5 QSGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSS 84 (126)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecc
Confidence 34456788999999999999976543 67877 2221 1211 124444322 1 599999
Q ss_pred CCCCCCeEEEEEE
Q psy10160 190 ANATDSGEYRCVA 202 (558)
Q Consensus 190 v~~~D~G~Y~C~a 202 (558)
++.+|++.|.|..
T Consensus 85 L~~eDTAvYYCAr 97 (126)
T d1lmka1 85 LTSEDSAVYYCAR 97 (126)
T ss_dssp CCGGGCEEEEEEE
T ss_pred cCCCcceEEEEee
Confidence 9999999999954
|
| >d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.00058 Score=52.06 Aligned_cols=65 Identities=15% Similarity=0.289 Sum_probs=41.5
Q ss_pred CCCcEEEEeEeecc-CC-CeEEEEECCEEeccCCc--eEEEccCC------eEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 143 VGSDISIPCDVDGY-PI-PQVFWYKDGQVIENDGV--HYRITESN------RLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 143 ~G~~v~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~--~~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
.++.++|.|.+.|. |. ..|.|.++|..+..... ......++ .|.|..-..+....|+|.+.....
T Consensus 19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~ 93 (102)
T d1q0xl2 19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH 93 (102)
T ss_dssp TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCc
Confidence 45678999999986 43 25999999988754211 11112233 355554444456799999987643
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.00028 Score=52.50 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=26.7
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQA 49 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~ 49 (558)
.+|.|.+++.+|+|.|+|.|.|.. .++.++|+.
T Consensus 57 ~~L~I~~v~~~D~G~Y~C~a~n~~---~~a~l~V~~ 89 (90)
T d1x44a1 57 HILIIEGATKADAAEYSVMTTGGQ---SSAKLSVDL 89 (90)
T ss_dssp EEEEEEEECTTTCSEEEEEETTEE---EEEEEEEEC
T ss_pred cEEEECccccccCEEEEEEEecce---EEEEEEEEE
Confidence 489999999999999999998743 356676653
|
| >d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=97.01 E-value=0.00092 Score=52.01 Aligned_cols=66 Identities=17% Similarity=0.419 Sum_probs=44.1
Q ss_pred ceEeeCCCcEEEEeEeeccCC----CeEEEEEC--CEEe------ccCC---------ceEEEccC-----CeEEEccCC
Q psy10160 138 TQVFGVGSDISIPCDVDGYPI----PQVFWYKD--GQVI------ENDG---------VHYRITES-----NRLHINQAN 191 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~----p~i~W~~~--g~~l------~~~~---------~~~~~~~~-----~sL~I~~v~ 191 (558)
...+++|++++|.|.++|... -.+.|+|. |+.+ ..++ .|+.+..+ -.|.|.+++
T Consensus 9 ~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~ 88 (123)
T d1r0ah1 9 PGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVE 88 (123)
T ss_dssp CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCC
T ss_pred CceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecc
Confidence 456789999999999998542 23679872 2211 1111 24444332 149999999
Q ss_pred CCCCeEEEEEEE
Q psy10160 192 ATDSGEYRCVAS 203 (558)
Q Consensus 192 ~~D~G~Y~C~a~ 203 (558)
.+|++.|.|...
T Consensus 89 ~eDsAvYyCAr~ 100 (123)
T d1r0ah1 89 TADTAIYYCAQS 100 (123)
T ss_dssp GGGCEEEEEEEE
T ss_pred cccceEEeeccc
Confidence 999999999643
|
| >d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD28 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.0015 Score=51.24 Aligned_cols=66 Identities=8% Similarity=0.141 Sum_probs=40.1
Q ss_pred eEeeCCCcEEEEeEeeccCCCe--E-EEEEC-CEEec--------------cCCceEEE--cc-C--CeEEEccCCCCCC
Q psy10160 139 QVFGVGSDISIPCDVDGYPIPQ--V-FWYKD-GQVIE--------------NDGVHYRI--TE-S--NRLHINQANATDS 195 (558)
Q Consensus 139 ~~v~~G~~v~L~C~~~g~P~p~--i-~W~~~-g~~l~--------------~~~~~~~~--~~-~--~sL~I~~v~~~D~ 195 (558)
..+.+|+.++|.|...+..... . .|++. +..+. ....++.. .. + .+|.|.+++.+|+
T Consensus 10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds 89 (118)
T d1yjdc1 10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT 89 (118)
T ss_dssp EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence 4567899999999987654332 3 34442 11110 00112221 11 1 2699999999999
Q ss_pred eEEEEEEEe
Q psy10160 196 GEYRCVASN 204 (558)
Q Consensus 196 G~Y~C~a~N 204 (558)
|.|.|.+..
T Consensus 90 avYyCa~~~ 98 (118)
T d1yjdc1 90 DIYFCKIEV 98 (118)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEec
Confidence 999997654
|
| >d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.00064 Score=52.00 Aligned_cols=66 Identities=27% Similarity=0.463 Sum_probs=41.9
Q ss_pred eCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCCceEE-EccCC------eEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 142 GVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGVHYR-ITESN------RLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 142 ~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~~~~-~~~~~------sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
..+..++|.|.+.|. |.. .|.|.++|..+........ ...++ .|.|..-.......|+|.+.....
T Consensus 19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~ 93 (104)
T d1o0va1 19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGH 93 (104)
T ss_dssp CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTE
T ss_pred CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCE
Confidence 345679999999994 544 4899999988764321111 11222 355544333345679999998754
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.00034 Score=55.44 Aligned_cols=35 Identities=14% Similarity=0.371 Sum_probs=28.0
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceE-EEEEEEE
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAV-SWTVTLQ 48 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~l~V~ 48 (558)
.+|.|.+++.+|+|.|.|.+.+..|... ...|+|.
T Consensus 88 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~ 123 (124)
T d1eaja_ 88 ASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 123 (124)
T ss_dssp CCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence 4899999999999999999999876543 4455543
|
| >d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=97.00 E-value=0.00077 Score=51.93 Aligned_cols=67 Identities=24% Similarity=0.499 Sum_probs=45.8
Q ss_pred CceEeeCCCcEEEEeEeeccCCC---eEEEEE--CCEEe------ccCC---------ceEEEccC-----CeEEEccCC
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIP---QVFWYK--DGQVI------ENDG---------VHYRITES-----NRLHINQAN 191 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p---~i~W~~--~g~~l------~~~~---------~~~~~~~~-----~sL~I~~v~ 191 (558)
-...+++|++++|.|.++|..-. .+.|.| .|+.+ ..++ .|+.+..+ ..|.|.+++
T Consensus 8 G~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~ 87 (119)
T d1ncwh1 8 GPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVT 87 (119)
T ss_dssp SCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccc
Confidence 35567899999999999998764 267876 33221 1111 24444332 149999999
Q ss_pred CCCCeEEEEEEE
Q psy10160 192 ATDSGEYRCVAS 203 (558)
Q Consensus 192 ~~D~G~Y~C~a~ 203 (558)
.+|++.|.|...
T Consensus 88 ~eDTAvYYCAr~ 99 (119)
T d1ncwh1 88 TEDTATYYCAGL 99 (119)
T ss_dssp GGGCEEEEEEEE
T ss_pred cCCceEEEEeEe
Confidence 999999999543
|
| >d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=96.99 E-value=0.00098 Score=52.14 Aligned_cols=70 Identities=17% Similarity=0.312 Sum_probs=47.0
Q ss_pred cCCceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------ec-cC---------CceEEEccC---C--eEEEcc
Q psy10160 135 TLETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IE-ND---------GVHYRITES---N--RLHINQ 189 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~-~~---------~~~~~~~~~---~--sL~I~~ 189 (558)
++....+++|+++.|.|.++|.... .+.|.|. |+. +. .+ ..|+.++.+ + .|.|.+
T Consensus 5 esg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~ 84 (130)
T d1rhhb1 5 QSGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTN 84 (130)
T ss_dssp ECCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred ccCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeec
Confidence 3455678899999999999997543 3778872 221 11 11 124444332 1 489999
Q ss_pred CCCCCCeEEEEEEEe
Q psy10160 190 ANATDSGEYRCVASN 204 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N 204 (558)
++.+|++.|.|....
T Consensus 85 L~~eDtAvYyCAr~~ 99 (130)
T d1rhhb1 85 LRSDDTAVYYCARDF 99 (130)
T ss_dssp CCGGGCEEEEEEEEC
T ss_pred cCCCCcEEEEEEeec
Confidence 999999999996543
|
| >d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=96.99 E-value=0.0017 Score=50.59 Aligned_cols=69 Identities=22% Similarity=0.369 Sum_probs=46.5
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCe--EEEEEC--CEE------eccC----------CceEEEccC---C--eEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQ--VFWYKD--GQV------IEND----------GVHYRITES---N--RLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~--i~W~~~--g~~------l~~~----------~~~~~~~~~---~--sL~I~~v 190 (558)
.-...+++|+++.|.|.++|...-. +.|.|. |+. +... ..|+.++.+ + .|.|.++
T Consensus 7 sG~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL 86 (128)
T d2nxyd1 7 SGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNL 86 (128)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeec
Confidence 3455678999999999999976543 677762 211 1111 124444432 1 4899999
Q ss_pred CCCCCeEEEEEEEe
Q psy10160 191 NATDSGEYRCVASN 204 (558)
Q Consensus 191 ~~~D~G~Y~C~a~N 204 (558)
+.+|++.|.|....
T Consensus 87 ~~eDTA~YYCAr~~ 100 (128)
T d2nxyd1 87 RSDDTAVYFCAGVY 100 (128)
T ss_dssp CGGGCEEEEEEEEE
T ss_pred cccCceEEEEeEEe
Confidence 99999999997654
|
| >d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=96.98 E-value=0.0014 Score=50.85 Aligned_cols=68 Identities=24% Similarity=0.518 Sum_probs=46.0
Q ss_pred CceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------eccC----------CceEEEccC---C--eEEEccCC
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IEND----------GVHYRITES---N--RLHINQAN 191 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~~----------~~~~~~~~~---~--sL~I~~v~ 191 (558)
-...+++|++++|.|.++|...- .+.|.|. |+. +..+ ..|+.++.+ + .|.|.+++
T Consensus 8 g~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~ 87 (126)
T d1dfbh1 8 GGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLR 87 (126)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeec
Confidence 34567899999999999997543 3788872 221 2111 124444332 1 58999999
Q ss_pred CCCCeEEEEEEEe
Q psy10160 192 ATDSGEYRCVASN 204 (558)
Q Consensus 192 ~~D~G~Y~C~a~N 204 (558)
.+|++.|.|....
T Consensus 88 ~eDtavYYCAr~~ 100 (126)
T d1dfbh1 88 AEDMALYYCVKGR 100 (126)
T ss_dssp GGGCEEEEEEEEE
T ss_pred cCcceEEEEEecc
Confidence 9999999996544
|
| >d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.00055 Score=51.40 Aligned_cols=74 Identities=16% Similarity=0.277 Sum_probs=42.3
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCC--eEEEEECCEEeccCCce--EEEccCCe---EEEccCCCCCCeEEEEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIP--QVFWYKDGQVIENDGVH--YRITESNR---LHINQANATDSGEYRCV 201 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~--~~~~~~~s---L~I~~v~~~D~G~Y~C~ 201 (558)
||.+.+.... ..++.++|.|.+.|+-+. .++|.++|..+...... .....+++ ...-.+..++...|+|.
T Consensus 3 PP~v~v~~~~---~~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~ 79 (95)
T d1k5na1 3 PPKTHVTHHP---ISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCH 79 (95)
T ss_dssp CCEEEEEEEE---EETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEE
T ss_pred CCccEEEecc---CCCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEE
Confidence 5555543222 235679999999997554 47999999887643211 01122221 11112334455689999
Q ss_pred EEeC
Q psy10160 202 ASNS 205 (558)
Q Consensus 202 a~N~ 205 (558)
+.-.
T Consensus 80 V~H~ 83 (95)
T d1k5na1 80 VQHE 83 (95)
T ss_dssp EECT
T ss_pred EEEC
Confidence 8764
|
| >d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]
Probab=96.96 E-value=0.0011 Score=51.37 Aligned_cols=67 Identities=22% Similarity=0.463 Sum_probs=45.4
Q ss_pred CceEeeCCCcEEEEeEeeccCC--C--eEEEEEC--CEE------eccCC---------ceEEEccC---C--eEEEccC
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPI--P--QVFWYKD--GQV------IENDG---------VHYRITES---N--RLHINQA 190 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~--p--~i~W~~~--g~~------l~~~~---------~~~~~~~~---~--sL~I~~v 190 (558)
-...+++|++++|.|.++|... . .+.|+|. |+. +..++ .|+.++.+ + .|.|.++
T Consensus 8 G~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL 87 (120)
T d1ai1h1 8 GPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISV 87 (120)
T ss_dssp CCSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSC
T ss_pred CCceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeee
Confidence 3456789999999999998653 2 3679873 222 22221 24444332 1 5999999
Q ss_pred CCCCCeEEEEEEE
Q psy10160 191 NATDSGEYRCVAS 203 (558)
Q Consensus 191 ~~~D~G~Y~C~a~ 203 (558)
+.+|++.|.|...
T Consensus 88 ~~eDtAvYYCAr~ 100 (120)
T d1ai1h1 88 TNEDTAMYYCSRE 100 (120)
T ss_dssp CGGGCEEEEEEEE
T ss_pred eccceeEEEEEec
Confidence 9999999999644
|
| >d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=96.95 E-value=0.0014 Score=50.72 Aligned_cols=67 Identities=16% Similarity=0.441 Sum_probs=45.4
Q ss_pred ceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------eccC----------CceEEEccC---C--eEEEccCCC
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IEND----------GVHYRITES---N--RLHINQANA 192 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~~----------~~~~~~~~~---~--sL~I~~v~~ 192 (558)
...+++|+++.|.|.++|..-- .+.|+|. |+. +..+ ..|+.++.+ + .|.|.+++.
T Consensus 9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~ 88 (122)
T d1bz7b1 9 GGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRS 88 (122)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred CceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecc
Confidence 4557899999999999997543 3788872 211 1111 124444332 1 589999999
Q ss_pred CCCeEEEEEEEe
Q psy10160 193 TDSGEYRCVASN 204 (558)
Q Consensus 193 ~D~G~Y~C~a~N 204 (558)
+|++.|.|...+
T Consensus 89 eDTAvYYCAr~~ 100 (122)
T d1bz7b1 89 EDTAIYYCTRGG 100 (122)
T ss_dssp GGCEEEEEEEEC
T ss_pred cCceEEEeecCC
Confidence 999999996543
|
| >d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=96.94 E-value=0.0022 Score=49.35 Aligned_cols=68 Identities=19% Similarity=0.463 Sum_probs=45.7
Q ss_pred CceEeeCCCcEEEEeEeeccCCC--eEEEEE--CCEEe------cc---C---------CceEEEccC---C--eEEEcc
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIP--QVFWYK--DGQVI------EN---D---------GVHYRITES---N--RLHINQ 189 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~--~g~~l------~~---~---------~~~~~~~~~---~--sL~I~~ 189 (558)
-...+++|++++|.|.++|...- .+.|+| .|+.+ .. + ..|+.++.+ + .|.|.+
T Consensus 8 G~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~ 87 (120)
T d1dlfh_ 8 GGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNT 87 (120)
T ss_dssp CCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred CCceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceee
Confidence 34557899999999999987544 378887 23221 11 0 124544432 1 599999
Q ss_pred CCCCCCeEEEEEEEe
Q psy10160 190 ANATDSGEYRCVASN 204 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N 204 (558)
++.+|++.|.|....
T Consensus 88 L~~eDtAvYYCA~~~ 102 (120)
T d1dlfh_ 88 LRAEDTGIYYCTGIY 102 (120)
T ss_dssp CCGGGCEEEEEEEEB
T ss_pred ccCCCceEEEeeEec
Confidence 999999999996543
|
| >d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.001 Score=48.17 Aligned_cols=44 Identities=14% Similarity=0.357 Sum_probs=38.7
Q ss_pred ceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee--eEEEEEEEe
Q psy10160 175 VHYRITESNRLHINQANATDSGEYRCVASNSYTSD--ENAVTIRVE 218 (558)
Q Consensus 175 ~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~--~~~~~l~V~ 218 (558)
..|.+..+|+|.|.++.++|+|+|.-.+.|..|.. +.++.|.|.
T Consensus 55 ~~y~i~~nGtLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI~ 100 (101)
T d1hnfa1 55 DTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ 100 (101)
T ss_dssp TTEEECTTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred ceEEEccCCcEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEee
Confidence 36888999999999999999999999999999987 477777764
|
| >d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=96.93 E-value=0.0011 Score=51.25 Aligned_cols=67 Identities=21% Similarity=0.457 Sum_probs=45.7
Q ss_pred CCceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------eccC----------CceEEEccC---C--eEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IEND----------GVHYRITES---N--RLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~~----------~~~~~~~~~---~--sL~I~~v 190 (558)
.-...+++|+++.|.|.++|.... .+.|.|. |+. +..+ ..|+.++.+ + .|.|.++
T Consensus 7 sG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL 86 (124)
T d1yedb1 7 SGPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSL 86 (124)
T ss_dssp CCCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESC
T ss_pred eCCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEeccccc
Confidence 445667899999999999997544 3788872 211 2211 124444332 2 4899999
Q ss_pred CCCCCeEEEEEE
Q psy10160 191 NATDSGEYRCVA 202 (558)
Q Consensus 191 ~~~D~G~Y~C~a 202 (558)
+.+|++.|.|..
T Consensus 87 ~~eDTAvYYCAR 98 (124)
T d1yedb1 87 KSEDSAVYFCTR 98 (124)
T ss_dssp CGGGCEEEEEEE
T ss_pred CCCcceEEEecc
Confidence 999999999964
|
| >d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=96.92 E-value=0.0011 Score=51.33 Aligned_cols=66 Identities=20% Similarity=0.566 Sum_probs=44.8
Q ss_pred ceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------eccC----------CceEEEccC---C--eEEEccCCC
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IEND----------GVHYRITES---N--RLHINQANA 192 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~~----------~~~~~~~~~---~--sL~I~~v~~ 192 (558)
...+++|+++.|.|.++|...- .+.|+|. |+. +..+ ..|+.+..+ + .|.|.+++.
T Consensus 9 ~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~ 88 (121)
T d1ol0a_ 9 GGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRA 88 (121)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccc
Confidence 4567899999999999986433 3778762 221 2111 124444432 1 599999999
Q ss_pred CCCeEEEEEEE
Q psy10160 193 TDSGEYRCVAS 203 (558)
Q Consensus 193 ~D~G~Y~C~a~ 203 (558)
+|++.|.|...
T Consensus 89 eDtAvYYCAr~ 99 (121)
T d1ol0a_ 89 EDTAVYYCARE 99 (121)
T ss_dssp GGCEEEEEEEC
T ss_pred ccceEEEEEEe
Confidence 99999999654
|
| >d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.91 E-value=0.00086 Score=49.56 Aligned_cols=71 Identities=14% Similarity=0.237 Sum_probs=42.5
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeeccCCC--eEEEEECCEEeccCCc--eEEEccCC------eEEEccCCCCCCeEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGYPIP--QVFWYKDGQVIENDGV--HYRITESN------RLHINQANATDSGEY 198 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~g~~l~~~~~--~~~~~~~~------sL~I~~v~~~D~G~Y 198 (558)
||.+.+... ...++.++|.|.+.|+-+. .+.|.++|..+..+.. ......++ .|.+. .++...|
T Consensus 3 pP~v~v~~~---~~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~---~~~~~~y 76 (89)
T d2mhaa1 3 SPKAHVTHH---SRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVP---LGKEQYY 76 (89)
T ss_dssp CCEEEECCE---ESCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEE---SSTTTTC
T ss_pred CCEeEEEcc---CCCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEec---CcCCCEE
Confidence 555554322 2346789999999996444 4799999988864321 11112233 34443 3344479
Q ss_pred EEEEEeC
Q psy10160 199 RCVASNS 205 (558)
Q Consensus 199 ~C~a~N~ 205 (558)
+|.+.-.
T Consensus 77 tC~V~H~ 83 (89)
T d2mhaa1 77 TCHVYHQ 83 (89)
T ss_dssp EEEEECS
T ss_pred EEEEEEC
Confidence 9998653
|
| >d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=96.91 E-value=0.0013 Score=51.55 Aligned_cols=67 Identities=21% Similarity=0.545 Sum_probs=45.2
Q ss_pred CceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------ec-----cCC----------ceEEEccC---C--eEE
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IE-----NDG----------VHYRITES---N--RLH 186 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~-----~~~----------~~~~~~~~---~--sL~ 186 (558)
-...+++|++++|.|.++|...- .+.|+|. |+. |. ..+ .|+.++.+ + .|.
T Consensus 8 G~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~ 87 (127)
T d1i3ua_ 8 GGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQ 87 (127)
T ss_dssp SCEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEE
T ss_pred CCceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEe
Confidence 34567899999999999986543 3788873 211 10 001 24444322 1 599
Q ss_pred EccCCCCCCeEEEEEEE
Q psy10160 187 INQANATDSGEYRCVAS 203 (558)
Q Consensus 187 I~~v~~~D~G~Y~C~a~ 203 (558)
|.+++.+|++.|.|...
T Consensus 88 i~~l~~eDtAvYYCAr~ 104 (127)
T d1i3ua_ 88 MNSLKPEDTAVYYCAAK 104 (127)
T ss_dssp ECSCCGGGCEEEEEEEE
T ss_pred eecccccceeEEEEEEE
Confidence 99999999999999754
|
| >d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=96.89 E-value=0.0014 Score=50.98 Aligned_cols=69 Identities=20% Similarity=0.385 Sum_probs=46.3
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCe--EEEEEC--CEE------ec-cC---------CceEEEccC---C--eEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQ--VFWYKD--GQV------IE-ND---------GVHYRITES---N--RLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~--i~W~~~--g~~------l~-~~---------~~~~~~~~~---~--sL~I~~v 190 (558)
+-...+++|+++.|.|.++|..... +.|.|. |+. +. .+ ..|+.++.+ + .|.|.++
T Consensus 7 sg~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL 86 (127)
T d2fx7h1 7 SGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSL 86 (127)
T ss_dssp CCCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeeccc
Confidence 3445678999999999999965443 788862 221 11 11 124444332 1 4999999
Q ss_pred CCCCCeEEEEEEEe
Q psy10160 191 NATDSGEYRCVASN 204 (558)
Q Consensus 191 ~~~D~G~Y~C~a~N 204 (558)
+.+|++.|.|....
T Consensus 87 ~~eDTavYYCAR~~ 100 (127)
T d2fx7h1 87 RPEDTAVYYCAREG 100 (127)
T ss_dssp CGGGCEEEEEEEEE
T ss_pred CcccceEEEEeecc
Confidence 99999999997554
|
| >d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]
Probab=96.89 E-value=0.0015 Score=50.16 Aligned_cols=68 Identities=18% Similarity=0.519 Sum_probs=45.7
Q ss_pred CceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------eccCC---------ceEEEccC---C--eEEEccCCC
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IENDG---------VHYRITES---N--RLHINQANA 192 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~~~---------~~~~~~~~---~--sL~I~~v~~ 192 (558)
-...+++|+++.|.|.++|..-- .+.|.|. |+. +..++ .|+.++.+ + .|.|.+++.
T Consensus 8 g~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~ 87 (118)
T d1lo4h1 8 GGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRS 87 (118)
T ss_dssp CCCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCG
T ss_pred CCceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccC
Confidence 34567899999999999997654 3778872 221 11111 13434322 1 599999999
Q ss_pred CCCeEEEEEEEe
Q psy10160 193 TDSGEYRCVASN 204 (558)
Q Consensus 193 ~D~G~Y~C~a~N 204 (558)
+|++.|.|....
T Consensus 88 eDtA~YyCAr~~ 99 (118)
T d1lo4h1 88 EDTAIYYCARGT 99 (118)
T ss_dssp GGCEEEEEEEEE
T ss_pred CcceEEEecccC
Confidence 999999996543
|
| >d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=96.88 E-value=0.0012 Score=51.42 Aligned_cols=66 Identities=21% Similarity=0.481 Sum_probs=44.7
Q ss_pred ceEeeCCCcEEEEeEeeccCCCe--EEEEEC--CEE------eccC----------CceEEEccC---C--eEEEccCCC
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIPQ--VFWYKD--GQV------IEND----------GVHYRITES---N--RLHINQANA 192 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p~--i~W~~~--g~~------l~~~----------~~~~~~~~~---~--sL~I~~v~~ 192 (558)
...+++|+++.|+|.++|..... +.|.|. |+. +..+ ..|+.++.+ + .|.|.+++.
T Consensus 8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~ 87 (126)
T d1rjca1 8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP 87 (126)
T ss_dssp CEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred CceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence 45678999999999999965544 788872 221 2111 124444432 2 499999999
Q ss_pred CCCeEEEEEEE
Q psy10160 193 TDSGEYRCVAS 203 (558)
Q Consensus 193 ~D~G~Y~C~a~ 203 (558)
+|++.|.|...
T Consensus 88 eDTAvYYCAr~ 98 (126)
T d1rjca1 88 EDTAMYYCAAD 98 (126)
T ss_dssp GGCEEEEEEEC
T ss_pred ccCceeEEEee
Confidence 99999999654
|
| >d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=96.88 E-value=0.0011 Score=51.91 Aligned_cols=68 Identities=19% Similarity=0.390 Sum_probs=45.9
Q ss_pred CCceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------eccC-C---------ceEEEccC---C--eEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IEND-G---------VHYRITES---N--RLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~~-~---------~~~~~~~~---~--sL~I~~v 190 (558)
+....+++|++++|.|.++|...- .+.|.+. |+. +..+ + .|+.++.+ + .|.|.++
T Consensus 7 sg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL 86 (130)
T d1rzga1 7 SGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSL 86 (130)
T ss_dssp CCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeec
Confidence 445667899999999999986543 4788872 221 1111 1 24444322 2 4889999
Q ss_pred CCCCCeEEEEEEE
Q psy10160 191 NATDSGEYRCVAS 203 (558)
Q Consensus 191 ~~~D~G~Y~C~a~ 203 (558)
+.+|++.|.|...
T Consensus 87 ~~eDtA~YYCAr~ 99 (130)
T d1rzga1 87 RSEDTAVFYCASP 99 (130)
T ss_dssp CGGGCEEEEEEEC
T ss_pred CCCccEEEEEEEe
Confidence 9999999999743
|
| >d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=96.87 E-value=0.001 Score=51.24 Aligned_cols=67 Identities=21% Similarity=0.448 Sum_probs=45.5
Q ss_pred CCceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------eccC----------CceEEEccC-----CeEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IEND----------GVHYRITES-----NRLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~~----------~~~~~~~~~-----~sL~I~~v 190 (558)
.-...+++|+++.|.|.++|.... .+.|.|. |+. +..+ ..|+.++.+ -.|.|.++
T Consensus 7 sg~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L 86 (120)
T d1ad9b1 7 SGAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSL 86 (120)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEecccccc
Confidence 445668899999999999986554 3778762 221 1111 124444322 15899999
Q ss_pred CCCCCeEEEEEE
Q psy10160 191 NATDSGEYRCVA 202 (558)
Q Consensus 191 ~~~D~G~Y~C~a 202 (558)
+.+|++.|.|..
T Consensus 87 ~~eDTAvYYCAr 98 (120)
T d1ad9b1 87 RSEDTAFYFCAR 98 (120)
T ss_dssp CGGGCEEEEEEE
T ss_pred CCCcceEEEEEE
Confidence 999999999964
|
| >d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=96.87 E-value=0.0018 Score=50.76 Aligned_cols=66 Identities=17% Similarity=0.456 Sum_probs=43.8
Q ss_pred ceEeeCCCcEEEEeEeeccCC----CeEEEEEC--CEEe------ccC---------CceEEEccC-----CeEEEccCC
Q psy10160 138 TQVFGVGSDISIPCDVDGYPI----PQVFWYKD--GQVI------END---------GVHYRITES-----NRLHINQAN 191 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~----p~i~W~~~--g~~l------~~~---------~~~~~~~~~-----~sL~I~~v~ 191 (558)
...+++|++++|.|.++|... ..+.|+|. |+.+ ..+ ..|+.+..+ ..|.|.+++
T Consensus 9 ~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~ 88 (126)
T d1etzb1 9 PGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVD 88 (126)
T ss_dssp CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccc
Confidence 346788999999999998532 24678862 2111 111 124544332 159999999
Q ss_pred CCCCeEEEEEEE
Q psy10160 192 ATDSGEYRCVAS 203 (558)
Q Consensus 192 ~~D~G~Y~C~a~ 203 (558)
.+|++.|.|...
T Consensus 89 ~eDtAvYyCAr~ 100 (126)
T d1etzb1 89 TSDTATYHCARR 100 (126)
T ss_dssp GGGCEEEEEEEE
T ss_pred ccccceEEEEEe
Confidence 999999999753
|
| >d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=96.85 E-value=0.0018 Score=51.09 Aligned_cols=67 Identities=19% Similarity=0.497 Sum_probs=45.2
Q ss_pred ceEeeCCCcEEEEeEeeccCC----CeEEEEEC--CEEe------ccC---------CceEEEccC---C--eEEEccCC
Q psy10160 138 TQVFGVGSDISIPCDVDGYPI----PQVFWYKD--GQVI------END---------GVHYRITES---N--RLHINQAN 191 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~----p~i~W~~~--g~~l------~~~---------~~~~~~~~~---~--sL~I~~v~ 191 (558)
...+++|++++|.|.++|... .-+.|+|. |+.+ ... ..|+.+..+ + .|.|.+++
T Consensus 9 ~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~ 88 (132)
T d1tjgh1 9 PPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVS 88 (132)
T ss_dssp CSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCC
Confidence 456789999999999998642 24789872 2111 111 124444332 1 49999999
Q ss_pred CCCCeEEEEEEEe
Q psy10160 192 ATDSGEYRCVASN 204 (558)
Q Consensus 192 ~~D~G~Y~C~a~N 204 (558)
.+|++.|.|-...
T Consensus 89 ~eDtAvYYCAr~~ 101 (132)
T d1tjgh1 89 PVDTATYFCAHRR 101 (132)
T ss_dssp GGGCEEEEEEEEC
T ss_pred cccceEEEEEEec
Confidence 9999999997543
|
| >d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=96.83 E-value=0.0023 Score=49.65 Aligned_cols=67 Identities=16% Similarity=0.474 Sum_probs=45.3
Q ss_pred ceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------eccC----------CceEEEccC---C--eEEEccCCC
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IEND----------GVHYRITES---N--RLHINQANA 192 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~~----------~~~~~~~~~---~--sL~I~~v~~ 192 (558)
...+++|+++.|.|.++|...- .+.|+|. |+. +..+ ..|+.++.+ + .|.|.+++.
T Consensus 9 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~ 88 (125)
T d1op3h1 9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV 88 (125)
T ss_dssp CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCC
Confidence 4567899999999999986433 3788872 221 1111 124544332 1 589999999
Q ss_pred CCCeEEEEEEEe
Q psy10160 193 TDSGEYRCVASN 204 (558)
Q Consensus 193 ~D~G~Y~C~a~N 204 (558)
+|++.|.|....
T Consensus 89 eDTAvYYCAr~~ 100 (125)
T d1op3h1 89 EDTAIYYCARKG 100 (125)
T ss_dssp GGCEEEEEEEEC
T ss_pred ccceeEeEeecc
Confidence 999999996543
|
| >d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.0005 Score=52.72 Aligned_cols=66 Identities=20% Similarity=0.406 Sum_probs=41.5
Q ss_pred eCCCcEEEEeEeecc-CC-CeEEEEECCEEeccCCc---eEEEccCC------eEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 142 GVGSDISIPCDVDGY-PI-PQVFWYKDGQVIENDGV---HYRITESN------RLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 142 ~~G~~v~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~---~~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
..++.++|.|.+.|. |. ..|.|.++|..+..... ......++ .|.|..-.......|+|.+.....
T Consensus 17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l 93 (105)
T d1fp5a2 17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAA 93 (105)
T ss_dssp SSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTS
T ss_pred hcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCC
Confidence 356789999999985 43 46999999988754210 00112223 355544433455689999987543
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.81 E-value=0.00023 Score=51.93 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=27.3
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEE
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V 47 (558)
.+.+|.|.+++.+|+|.|+|.|.|..+.. .+.|+|
T Consensus 46 ~~~~l~i~~v~~~d~G~Y~C~a~~s~~S~-~v~l~V 80 (82)
T d1f2qa1 46 TNSSLNIVNAKFEDSGEYKCQHQQVNESE-PVYLEV 80 (82)
T ss_dssp CSSEEEECSCCGGGCEEEEEECTTSSCCC-CEEEEE
T ss_pred ccceeEECCCChhhCCcEEEEecCCCCcc-cEEEEE
Confidence 56789999999999999999998865543 334443
|
| >d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=96.80 E-value=0.0029 Score=49.54 Aligned_cols=71 Identities=21% Similarity=0.375 Sum_probs=46.9
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCe--EEEEEC--CEE------ec-cC---------CceEEEccC---C--eEEEccC
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQ--VFWYKD--GQV------IE-ND---------GVHYRITES---N--RLHINQA 190 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~--i~W~~~--g~~------l~-~~---------~~~~~~~~~---~--sL~I~~v 190 (558)
.-...+++|+++.|.|.++|...-. +.|.|. |+. +. .+ ..|+.++.+ + .|.+.++
T Consensus 6 sG~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L 85 (133)
T d1rzfh1 6 SGAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGL 85 (133)
T ss_dssp CCCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccC
Confidence 3456688999999999999975433 678772 211 11 11 124444332 1 4899999
Q ss_pred CCCCCeEEEEEEEeCC
Q psy10160 191 NATDSGEYRCVASNSY 206 (558)
Q Consensus 191 ~~~D~G~Y~C~a~N~~ 206 (558)
+.+|++.|.|......
T Consensus 86 ~~eDtA~YYCAr~~~~ 101 (133)
T d1rzfh1 86 RSDDTAVYYCASNSIA 101 (133)
T ss_dssp CGGGCEEEEEEEEECC
T ss_pred CCCCCEEEEeeeccCC
Confidence 9999999999654433
|
| >d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.00041 Score=52.94 Aligned_cols=79 Identities=13% Similarity=0.204 Sum_probs=45.4
Q ss_pred CcEEEecCCceEeeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCCc--eEEEccCC------eEEEccCCCCCCeEE
Q psy10160 129 PVKVNITLETQVFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGV--HYRITESN------RLHINQANATDSGEY 198 (558)
Q Consensus 129 p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~--~~~~~~~~------sL~I~~v~~~D~G~Y 198 (558)
+|.+.+.+....-..++.++|.|.+.|. |.. .|.|.++|..+..... ......++ .|.|..-..+....|
T Consensus 5 ~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~y 84 (102)
T d1rzfl2 5 APSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSY 84 (102)
T ss_dssp CCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCE
T ss_pred CCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEE
Confidence 5555443322222246779999999995 433 5899999988764210 11122333 344433322234579
Q ss_pred EEEEEeCCc
Q psy10160 199 RCVASNSYT 207 (558)
Q Consensus 199 ~C~a~N~~G 207 (558)
+|.+.....
T Consensus 85 tC~V~H~~~ 93 (102)
T d1rzfl2 85 SCQVTHEGS 93 (102)
T ss_dssp EEEEEETTE
T ss_pred EEEEEECCc
Confidence 999998643
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=8.7e-05 Score=55.72 Aligned_cols=34 Identities=35% Similarity=0.317 Sum_probs=28.3
Q ss_pred cCCeEEEcCCCCCCCE-EEEEEEEeCCcceE-EEEE
Q psy10160 12 NKNMLTIKRVEPERLG-AYTCQAYNGLGRAV-SWTV 45 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G-~Y~C~a~n~~g~~~-s~~l 45 (558)
..++|.|.+++.+|+| .|+|.|.|..|... ++.|
T Consensus 54 ~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~l 89 (92)
T d2ifga1 54 PSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQV 89 (92)
T ss_dssp SEEEEEEESCCSTTTTCCEEECCEETTEECCEEECC
T ss_pred cceeEEEccccccccceEEEEEEEcCCCEEEEEEEE
Confidence 4468999999999999 69999999999863 4443
|
| >d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=96.77 E-value=0.0014 Score=50.68 Aligned_cols=68 Identities=24% Similarity=0.568 Sum_probs=46.3
Q ss_pred CceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------ecc--C----------CceEEEccCC-----eEEEcc
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IEN--D----------GVHYRITESN-----RLHINQ 189 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~--~----------~~~~~~~~~~-----sL~I~~ 189 (558)
-...+++|+++.|.|.++|.... .+.|+|. |+. +.. + ..|+.++.+. .|.|.+
T Consensus 8 g~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~s 87 (122)
T d1q9rb1 8 GGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT 87 (122)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred CCceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceee
Confidence 34567899999999999997554 3789873 221 111 0 1244444321 489999
Q ss_pred CCCCCCeEEEEEEEe
Q psy10160 190 ANATDSGEYRCVASN 204 (558)
Q Consensus 190 v~~~D~G~Y~C~a~N 204 (558)
++.+|++.|.|....
T Consensus 88 L~~eDTAvYYCar~~ 102 (122)
T d1q9rb1 88 LRAEDSATYYCARDH 102 (122)
T ss_dssp CCGGGCEEEEEEECC
T ss_pred eccCcceEEEEEecC
Confidence 999999999997543
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=96.77 E-value=0.00028 Score=52.44 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=27.1
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEEe
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQA 49 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~~ 49 (558)
..+|.|.+++.+|+|.|+|.|.|..+ ++.|.|..
T Consensus 55 ~~~L~I~~~~~~D~G~Y~c~a~n~~~---sa~l~V~e 88 (89)
T d1tiua_ 55 KHILILHNCQLGMTGEVSFQAANAKS---AANLKVKE 88 (89)
T ss_dssp CEEEECCSCCSCCCSEECCBCSSCBC---CEEEEEEC
T ss_pred eEEEEEcCCChhcCEEEEEEECceEE---EEEEEEEE
Confidence 34899999999999999999988654 44566653
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=96.76 E-value=0.00042 Score=50.73 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=24.5
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcc
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGR 39 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 39 (558)
.+.+|.|.+++.+|+|.|+|.|.|..+.
T Consensus 50 ~~~~l~i~~~~~~d~G~Y~C~a~~s~~S 77 (84)
T d1fnla1 50 QASSYFIDAATVNDSGEYRCQTNLSTLS 77 (84)
T ss_dssp SCSEEEESSCCGGGCEEEEEECSSSCCC
T ss_pred cceeeEecCCcccCCEEEEEEccCCCcc
Confidence 5679999999999999999999876543
|
| >d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=96.74 E-value=0.0066 Score=45.85 Aligned_cols=66 Identities=15% Similarity=0.270 Sum_probs=41.4
Q ss_pred eeCCCcEEEEeEeecc-CC-CeEEEEECCEEeccCCc-eEEEccCCeEEEc---cCCCCCCeEEEEEEEeCC
Q psy10160 141 FGVGSDISIPCDVDGY-PI-PQVFWYKDGQVIENDGV-HYRITESNRLHIN---QANATDSGEYRCVASNSY 206 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~-~~~~~~~~sL~I~---~v~~~D~G~Y~C~a~N~~ 206 (558)
+..|+..+|.|.+.|. |. ..+.|.+||..+..... ......+++..+. .+..+|...|+|.+.-..
T Consensus 15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~~ 86 (103)
T d1hdma1 15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEP 86 (103)
T ss_dssp CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECCCTTCCEEEEEEETT
T ss_pred hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEecCCCCEEEEEEEeCC
Confidence 3568889999999995 43 25899999987653221 1222233422211 234456667999998864
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.72 E-value=0.00054 Score=51.35 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=25.1
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEEE
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTLQ 48 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V~ 48 (558)
.+|.|.+++.+|+|.|+|.|.|..+ +..|.|.
T Consensus 62 ~~L~I~~~~~~D~G~Y~c~a~n~~~---s~~l~V~ 93 (94)
T d1pd6a_ 62 RTLTISQCSLADDAAYQCVVGGEKC---STELFVK 93 (94)
T ss_dssp EEEEECSCSSSSCEEEEEEETTEEE---CCEEEEE
T ss_pred EEeecCCCCceecEEEEEEEeeEEE---EEEEEEE
Confidence 4799999999999999999977432 4455554
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.69 E-value=0.00016 Score=56.69 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=28.7
Q ss_pred eEEEcCCCCCC-CEEEEEEEEeCCcceEEEEEEEEeC
Q psy10160 15 MLTIKRVEPER-LGAYTCQAYNGLGRAVSWTVTLQAL 50 (558)
Q Consensus 15 ~L~I~~v~~~D-~G~Y~C~a~n~~g~~~s~~l~V~~~ 50 (558)
.|.|.+++.+| +|.|+|.|.|..|.. +..+.|.+.
T Consensus 70 ~L~I~~v~~~D~~G~Y~C~A~N~~G~~-~~~~~L~V~ 105 (115)
T d2crya1 70 TLTISNIVRADFQTIYNCTAWNSFGSD-TEIIRLKEQ 105 (115)
T ss_dssp EEECTTCCHHHHHSCEEEEEECSSCEE-EEEECCCCS
T ss_pred EEEEeccchhcCCeEEEEEEEECCCeE-EEEEEEEEE
Confidence 69999999999 799999999999986 444455444
|
| >d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=96.68 E-value=0.0023 Score=49.84 Aligned_cols=68 Identities=24% Similarity=0.595 Sum_probs=45.2
Q ss_pred ceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEE------eccCC----------ceEEEccC---C--eEEEccCCC
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQV------IENDG----------VHYRITES---N--RLHINQANA 192 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~------l~~~~----------~~~~~~~~---~--sL~I~~v~~ 192 (558)
...+++|+++.|.|.++|...- .+.|.|. |+. +...+ .|+.++.+ + .|.|.+++.
T Consensus 9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~ 88 (127)
T d2fb4h1 9 GGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRP 88 (127)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeee
Confidence 4567899999999999986433 3778772 211 11111 24444332 1 489999999
Q ss_pred CCCeEEEEEEEeC
Q psy10160 193 TDSGEYRCVASNS 205 (558)
Q Consensus 193 ~D~G~Y~C~a~N~ 205 (558)
+|++.|.|.....
T Consensus 89 eDTA~YYCAr~~~ 101 (127)
T d2fb4h1 89 EDTGVYFCARDGG 101 (127)
T ss_dssp GGCEEEEEEEECS
T ss_pred cceeEEEEEEecC
Confidence 9999999975543
|
| >d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=96.66 E-value=0.0015 Score=50.82 Aligned_cols=66 Identities=27% Similarity=0.505 Sum_probs=44.2
Q ss_pred ceEeeCCCcEEEEeEeeccCCC---eEEEEEC--CEEe------ccCC---------ceEEEccC-----CeEEEccCCC
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIP---QVFWYKD--GQVI------ENDG---------VHYRITES-----NRLHINQANA 192 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p---~i~W~~~--g~~l------~~~~---------~~~~~~~~-----~sL~I~~v~~ 192 (558)
...+++|+++.|.|.++|..-. .+.|+|. |+.+ ..++ .|+.+..+ ..|.|.+++.
T Consensus 9 ~~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~ 88 (127)
T d3cx5j1 9 AGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTT 88 (127)
T ss_dssp CSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecccc
Confidence 3457889999999999997542 4789872 3322 1111 12222221 1599999999
Q ss_pred CCCeEEEEEEE
Q psy10160 193 TDSGEYRCVAS 203 (558)
Q Consensus 193 ~D~G~Y~C~a~ 203 (558)
+|++.|.|...
T Consensus 89 eDtAvYyCAr~ 99 (127)
T d3cx5j1 89 EDTATYYCARS 99 (127)
T ss_dssp GGCEEEEEEEE
T ss_pred ccceEEEeeee
Confidence 99999999643
|
| >d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=96.62 E-value=0.0027 Score=49.69 Aligned_cols=66 Identities=18% Similarity=0.518 Sum_probs=44.7
Q ss_pred ceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CEEe------c---cC---------CceEEEccC---C--eEEEccC
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQVI------E---ND---------GVHYRITES---N--RLHINQA 190 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~~l------~---~~---------~~~~~~~~~---~--sL~I~~v 190 (558)
...+++|++++|.|.++|...- .+.|+|. |+.+ . .. ..|+.++.+ + .|.|.++
T Consensus 9 ~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L 88 (131)
T d3c2ah1 9 GGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSL 88 (131)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred CceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceecc
Confidence 4567899999999999986543 3778862 2211 1 11 124444332 1 5999999
Q ss_pred CCCCCeEEEEEEE
Q psy10160 191 NATDSGEYRCVAS 203 (558)
Q Consensus 191 ~~~D~G~Y~C~a~ 203 (558)
+.+|++.|.|...
T Consensus 89 ~~eDTAvYYCAR~ 101 (131)
T d3c2ah1 89 KTEDTAVYSCTTD 101 (131)
T ss_dssp CGGGCEEEEEEEE
T ss_pred ccCCceEEEEecc
Confidence 9999999999754
|
| >d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.59 E-value=0.0005 Score=52.87 Aligned_cols=67 Identities=25% Similarity=0.532 Sum_probs=44.1
Q ss_pred ceEeeCCCcEEEEeEeeccCCCe--EEEEE--CCEEe------ccCC---------ceEEEccC---C--eEEEccCCCC
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIPQ--VFWYK--DGQVI------ENDG---------VHYRITES---N--RLHINQANAT 193 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p~--i~W~~--~g~~l------~~~~---------~~~~~~~~---~--sL~I~~v~~~ 193 (558)
...+++|++++|+|.++|...-. +.|+| .|+.+ ..++ .|+.++.+ + .|.+.+++.+
T Consensus 9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~e 88 (116)
T d1fn4b1 9 PGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTD 88 (116)
T ss_dssp CSBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCC
T ss_pred CceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCC
Confidence 34567899999999999976543 78987 23221 1111 12222221 1 4889999999
Q ss_pred CCeEEEEEEEe
Q psy10160 194 DSGEYRCVASN 204 (558)
Q Consensus 194 D~G~Y~C~a~N 204 (558)
|++.|.|....
T Consensus 89 DTAvYyCAr~~ 99 (116)
T d1fn4b1 89 DTGTYYCTRDL 99 (116)
T ss_dssp CCEEEEEEEEC
T ss_pred CCEEEEEEeec
Confidence 99999996443
|
| >d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.59 E-value=0.0026 Score=48.92 Aligned_cols=68 Identities=21% Similarity=0.564 Sum_probs=45.4
Q ss_pred CCceEeeCCCcEEEEeEeeccCCCe--EEEEE--CCEEe------c---cCC---------ceEEEccC---C--eEEEc
Q psy10160 136 LETQVFGVGSDISIPCDVDGYPIPQ--VFWYK--DGQVI------E---NDG---------VHYRITES---N--RLHIN 188 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~P~p~--i~W~~--~g~~l------~---~~~---------~~~~~~~~---~--sL~I~ 188 (558)
.-...+++|+++.|.|.++|...-. +.|.| .|+.+ . .++ .|+.++.+ + .|.|.
T Consensus 7 SG~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~ 86 (121)
T d1nfdf1 7 SGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMN 86 (121)
T ss_dssp ECCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEE
T ss_pred ECCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceec
Confidence 3456788999999999999975443 67887 23221 1 111 12222221 1 49999
Q ss_pred cCCCCCCeEEEEEEE
Q psy10160 189 QANATDSGEYRCVAS 203 (558)
Q Consensus 189 ~v~~~D~G~Y~C~a~ 203 (558)
+++.+|++.|.|...
T Consensus 87 ~L~~eDTAvYYCAr~ 101 (121)
T d1nfdf1 87 RLRVDDTAIYYCTRA 101 (121)
T ss_dssp SCCGGGCEECEEEEE
T ss_pred ccCCCcceEEEEecc
Confidence 999999999999654
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.58 E-value=0.0012 Score=51.65 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=24.8
Q ss_pred CCceEe------cCCeEEEcCCCCCCCEEEEEEEEeCCc
Q psy10160 6 SENYEL------NKNMLTIKRVEPERLGAYTCQAYNGLG 38 (558)
Q Consensus 6 ~~r~~~------~~~~L~I~~v~~~D~G~Y~C~a~n~~g 38 (558)
.+|+.+ ++.+|.|.+++.+|+|.|.|.+.+..+
T Consensus 67 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~ 105 (119)
T d1neua_ 67 KERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPD 105 (119)
T ss_dssp TTCEEECCBGGGTBCCEEECSCCGGGCEEEEEEEEC---
T ss_pred eeEEEEEEECCCCEEEEEECCCChHHCEEEEEEEEECCC
Confidence 456664 235899999999999999999987543
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.56 E-value=0.00068 Score=52.14 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=28.1
Q ss_pred CeEEEcCCCCCCCE-EEEEEEEeCCcceEEEEEEEE
Q psy10160 14 NMLTIKRVEPERLG-AYTCQAYNGLGRAVSWTVTLQ 48 (558)
Q Consensus 14 ~~L~I~~v~~~D~G-~Y~C~a~n~~g~~~s~~l~V~ 48 (558)
..|.|.+++.+|.| .|+|.|.|..|.. +..+.|.
T Consensus 70 ~~L~I~~v~~~D~g~~Y~C~A~N~~G~~-~~~i~L~ 104 (107)
T d1iray3 70 TVLNISEIESRFYKHPFTCFAKNTHGID-AAYIQLI 104 (107)
T ss_dssp EEEEESSCCGGGGSSCEEEEEECSSCEE-EEEEEEE
T ss_pred EEEEEeecchHHCCcEEEEEEEeCCCeE-EEEEEEE
Confidence 47999999999999 5999999999976 4444443
|
| >d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=96.48 E-value=0.00082 Score=51.48 Aligned_cols=66 Identities=24% Similarity=0.537 Sum_probs=44.7
Q ss_pred CceEeeCCCcEEEEeEeeccCCC--eEEEEEC--CE------EeccC-C---------ceEEEccCC-----eEEEccCC
Q psy10160 137 ETQVFGVGSDISIPCDVDGYPIP--QVFWYKD--GQ------VIEND-G---------VHYRITESN-----RLHINQAN 191 (558)
Q Consensus 137 ~~~~v~~G~~v~L~C~~~g~P~p--~i~W~~~--g~------~l~~~-~---------~~~~~~~~~-----sL~I~~v~ 191 (558)
-...+++|+++.|.|.++|...- .+.|.|. |+ .+... + .|+.++.+. .|.|.+++
T Consensus 8 G~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~ 87 (117)
T d1b2wh1 8 GGGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLR 87 (117)
T ss_dssp CCCEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeecccc
Confidence 34567899999999999986433 4678762 21 12111 1 245554321 58999999
Q ss_pred CCCCeEEEEEE
Q psy10160 192 ATDSGEYRCVA 202 (558)
Q Consensus 192 ~~D~G~Y~C~a 202 (558)
.+|++.|.|..
T Consensus 88 ~eDTAvYYCAr 98 (117)
T d1b2wh1 88 PEDTAVYYCAR 98 (117)
T ss_dssp GGGCEEEECCE
T ss_pred CCcceEEEEcc
Confidence 99999999953
|
| >d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=96.47 E-value=0.0013 Score=52.32 Aligned_cols=76 Identities=16% Similarity=0.423 Sum_probs=46.9
Q ss_pred eCcEEEec-CCceEeeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccC---------------CceEEEccCCeEEEcc
Q psy10160 128 VPVKVNIT-LETQVFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIEND---------------GVHYRITESNRLHINQ 189 (558)
Q Consensus 128 ~p~~~~~~-~~~~~v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~---------------~~~~~~~~~~sL~I~~ 189 (558)
.||.+.+. |.......++.++|.|.+.|. |.. .|.|+++|..+... +..|... +.|.|..
T Consensus 3 ~PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~s--S~L~v~~ 80 (127)
T d1ogae2 3 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLS--SRLRVSA 80 (127)
T ss_dssp BCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEE--EEEEEEH
T ss_pred cCCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEE--EEEEECH
Confidence 46666543 333334557889999999995 433 48999999887532 1112111 2466655
Q ss_pred CCCCCCe-EEEEEEEeC
Q psy10160 190 ANATDSG-EYRCVASNS 205 (558)
Q Consensus 190 v~~~D~G-~Y~C~a~N~ 205 (558)
-.-++.| .|+|.+...
T Consensus 81 ~~W~~~g~~ytC~V~H~ 97 (127)
T d1ogae2 81 TFWQNPRNHFRCQVQFY 97 (127)
T ss_dssp HHHTCTTCEEEEEEEEC
T ss_pred HHhCCCCCEEEEEEEEC
Confidence 4445655 799999764
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=96.45 E-value=0.00052 Score=50.37 Aligned_cols=28 Identities=18% Similarity=0.142 Sum_probs=24.3
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCcc
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLGR 39 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 39 (558)
.++.|.|.+++.+|+|.|+|.+.|..+.
T Consensus 49 ~~~~l~i~~v~~~dsG~Y~C~a~ns~~S 76 (85)
T d2fcba1 49 HTQPSYRFKANNNDSGEYTCQTGQTSLS 76 (85)
T ss_dssp CCSSEEEEECCGGGCEEEEEECTTSBCC
T ss_pred cccceEEeeccccCCcEEEEECCCCccc
Confidence 4578999999999999999999886543
|
| >d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.41 E-value=0.0013 Score=50.67 Aligned_cols=77 Identities=12% Similarity=0.330 Sum_probs=46.4
Q ss_pred CcEEEe-cCCceEeeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCCce----EEE--ccCC------eEEEccCCCC
Q psy10160 129 PVKVNI-TLETQVFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGVH----YRI--TESN------RLHINQANAT 193 (558)
Q Consensus 129 p~~~~~-~~~~~~v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~~----~~~--~~~~------sL~I~~v~~~ 193 (558)
||.+.+ .+....+..++.++|.|.+.|. |.. .|.|+++|..+...... ... ..++ .|.|..-...
T Consensus 4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~ 83 (108)
T d1ow0a2 4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWK 83 (108)
T ss_dssp CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHH
T ss_pred CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhC
Confidence 455543 3333445578899999999995 543 69999999887642100 000 1122 3445433333
Q ss_pred CCeEEEEEEEeC
Q psy10160 194 DSGEYRCVASNS 205 (558)
Q Consensus 194 D~G~Y~C~a~N~ 205 (558)
....|+|.+...
T Consensus 84 ~g~~ytC~V~H~ 95 (108)
T d1ow0a2 84 KGDTFSCMVGHE 95 (108)
T ss_dssp HTCCEEEEEECT
T ss_pred CCCEEEEEEEeC
Confidence 456899999764
|
| >d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.32 E-value=0.00027 Score=54.21 Aligned_cols=65 Identities=14% Similarity=0.290 Sum_probs=40.2
Q ss_pred CCCcEEEEeEeecc-CCC-eEEEEECCEEeccCCceE-EEccCCe------EEEccCCCCCCeEEEEEEEeCCc
Q psy10160 143 VGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGVHY-RITESNR------LHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 143 ~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~~~-~~~~~~s------L~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
.++.+.|.|.+.|. |.. .|.|.++|..+....... ....+++ |.|..-..++...|+|.+.....
T Consensus 19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~ 92 (104)
T d1nfde2 19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGE 92 (104)
T ss_dssp HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTT
T ss_pred cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCC
Confidence 46678999999995 433 699999999886431111 1112232 33333333455689999988654
|
| >d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.32 E-value=0.0042 Score=47.47 Aligned_cols=64 Identities=19% Similarity=0.415 Sum_probs=39.3
Q ss_pred CCCcEEEEeEeecc-CC-CeEEEEECCEEeccCCce-E--EEccCC------eEEEccCCCCCCeEEEEEEEeCC
Q psy10160 143 VGSDISIPCDVDGY-PI-PQVFWYKDGQVIENDGVH-Y--RITESN------RLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 143 ~G~~v~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~-~--~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
.++.++|.|.+.|. |. ..|.|.+||..+...... . ....++ .|.|..-.......|+|.+....
T Consensus 19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~ 93 (107)
T d1mjul2 19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT 93 (107)
T ss_dssp TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTT
T ss_pred cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence 46679999999985 43 359999999887542100 0 011233 34444333333568999998654
|
| >d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC homolog, alpha-3 domain species: Human (Homo sapiens), Mic-a [TaxId: 9606]
Probab=96.31 E-value=0.0057 Score=45.43 Aligned_cols=75 Identities=20% Similarity=0.449 Sum_probs=43.3
Q ss_pred eCcEEEecCCceEeeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCCceE---EEccCCe---EEEccCCCCCCeEEE
Q psy10160 128 VPVKVNITLETQVFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGVHY---RITESNR---LHINQANATDSGEYR 199 (558)
Q Consensus 128 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~~~---~~~~~~s---L~I~~v~~~D~G~Y~ 199 (558)
.||.+.+.... ..++.++|.|.+.|+ |.. .+.|.++|..+....... .-..+++ ...-.+..+|...|+
T Consensus 2 vpP~V~v~~~~---~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~yt 78 (94)
T d1hyrc1 2 VPPMVNVTRSE---ASEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFT 78 (94)
T ss_dssp BCCEEEEEECC---CSSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEE
T ss_pred cCCEEEEEecC---CCCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEE
Confidence 35655543322 245678999999996 443 589999998876432111 1122232 111123344555799
Q ss_pred EEEEeC
Q psy10160 200 CVASNS 205 (558)
Q Consensus 200 C~a~N~ 205 (558)
|.+.-.
T Consensus 79 C~V~H~ 84 (94)
T d1hyrc1 79 CYMEHS 84 (94)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999764
|
| >d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: CD1, alpha-3 domain species: Human (Homo sapiens), CD1a [TaxId: 9606]
Probab=96.27 E-value=0.0025 Score=47.62 Aligned_cols=60 Identities=18% Similarity=0.416 Sum_probs=38.6
Q ss_pred CCCcEEEEeEeecc-CCC-eEEEEECCEEeccCCc-eEEEccCC------eEEEccCCCCCCeEEEEEEEeC
Q psy10160 143 VGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGV-HYRITESN------RLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 143 ~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~-~~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
.++.++|.|.+.|. |.. .+.|.+++..+..... ......++ .|.+. .+|...|+|.+...
T Consensus 15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~ 83 (96)
T d2h26a1 15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA---DGEAAGLSCRVKHS 83 (96)
T ss_dssp STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE---GGGCTTEEEEEEEG
T ss_pred CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe---CccCCEEEEEEEeC
Confidence 45689999999995 555 5899999987653210 11122333 24443 35566899998764
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.25 E-value=0.0028 Score=48.29 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=22.5
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCc
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLG 38 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g 38 (558)
+.+|.|.+++.+|+|.|.|.+.+..+
T Consensus 64 ~~sL~I~~v~~~D~G~Y~C~V~~~~~ 89 (105)
T d1dr9a1 64 NLSIVILALRPSDEGTYECVVLKYEK 89 (105)
T ss_dssp TTEEEECSCCGGGCEEEEEEEEECCT
T ss_pred cEEEEECcCChHHCeEEEEEEEeCCC
Confidence 45899999999999999999986433
|
| >d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.17 E-value=0.0058 Score=46.68 Aligned_cols=64 Identities=16% Similarity=0.349 Sum_probs=39.7
Q ss_pred CCCcEEEEeEeecc-CCC-eEEEEECCEEeccCCceEEE---ccCC------eEEEccCCCCCCeEEEEEEEeCC
Q psy10160 143 VGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGVHYRI---TESN------RLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 143 ~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~~~~~---~~~~------sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
.++.++|.|.+.|. |.. .|.|.+||..+......... ..++ .|.|..-..+....|+|.+....
T Consensus 19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~ 93 (107)
T d1c5cl2 19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQG 93 (107)
T ss_dssp HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTT
T ss_pred cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence 36789999999995 543 59999999876542111110 1122 35554433334458999998754
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.09 E-value=0.0019 Score=48.52 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.3
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
.+|.|.+++.+|+|.|.|.+.+
T Consensus 67 ~sL~I~~l~~~DsG~Y~C~v~~ 88 (97)
T d2nxyb1 67 FPLIIKNLKIEDSDTYICEVED 88 (97)
T ss_dssp CCEEECSCCGGGCEEEEEEETT
T ss_pred EEEEECCCChHHCEEEEEEEec
Confidence 4799999999999999999965
|
| >d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.0094 Score=45.22 Aligned_cols=79 Identities=9% Similarity=0.169 Sum_probs=42.6
Q ss_pred cCCceEeeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCCceE-EEccCC------eEEEccCCCC--CCeEEEEEEE
Q psy10160 135 TLETQVFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGVHY-RITESN------RLHINQANAT--DSGEYRCVAS 203 (558)
Q Consensus 135 ~~~~~~v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~~~-~~~~~~------sL~I~~v~~~--D~G~Y~C~a~ 203 (558)
.+........+.+.|.|.+.|+ |.. .|.|.++|..+....... ....++ .|.|..-.-. ....|+|.+.
T Consensus 12 ~p~~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~ 91 (105)
T d1dn0b2 12 VSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQ 91 (105)
T ss_dssp ECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEE
T ss_pred CCCccccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEE
Confidence 3333334456789999999995 543 599999887654311000 011222 3555433321 2247999999
Q ss_pred eCCceeeEEE
Q psy10160 204 NSYTSDENAV 213 (558)
Q Consensus 204 N~~G~~~~~~ 213 (558)
...+.....+
T Consensus 92 H~~~~~~~~v 101 (105)
T d1dn0b2 92 HPNGNKEKNV 101 (105)
T ss_dssp CTTCCEEEEE
T ss_pred ECCCCEEeEE
Confidence 8776655443
|
| >d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.91 E-value=0.0034 Score=47.52 Aligned_cols=65 Identities=22% Similarity=0.426 Sum_probs=36.4
Q ss_pred eCCCcEEEEeEeecc-CCC-eEEEEECCEEeccC-------CceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 142 GVGSDISIPCDVDGY-PIP-QVFWYKDGQVIEND-------GVHYRITESNRLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 142 ~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~-------~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
..++.++|.|.+.|. |.. .|.|.+++...... ++.|.. .+.|.|..-.. +.+.|+|.+....+..
T Consensus 18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~--~S~L~v~~~~w-~~~~ytC~V~H~~~~~ 91 (102)
T d1mjuh2 18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTL--SSSVTVTSSTW-PSQSITCNVAHPASST 91 (102)
T ss_dssp ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEE--EEEEEECTTTT-TTSCCEEEEEEGGGTE
T ss_pred cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEE--EEEEEEehhHc-CCceEEEEEEECCCCE
Confidence 357889999999995 433 58997666322110 112211 12466655443 3578999999865544
|
| >d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus), gamma2 [TaxId: 10090]
Probab=95.90 E-value=0.0028 Score=48.07 Aligned_cols=64 Identities=17% Similarity=0.364 Sum_probs=38.7
Q ss_pred CCCcEEEEeEeecc-CC-CeEEEEECCEEeccCCc-eEEEccCC------eEEEccCCCCCCeEEEEEEEeCC
Q psy10160 143 VGSDISIPCDVDGY-PI-PQVFWYKDGQVIENDGV-HYRITESN------RLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 143 ~G~~v~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~-~~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
.++.++|.|.+.|. |. ..|.|.++|........ ......++ .|.|..-..+....|+|.+....
T Consensus 18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~ 90 (102)
T d1igtb4 18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG 90 (102)
T ss_dssp TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence 47789999999995 54 35999999976532100 00112222 35554333234557999998643
|
| >d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.88 E-value=0.0027 Score=48.13 Aligned_cols=62 Identities=23% Similarity=0.428 Sum_probs=39.0
Q ss_pred CCcEEEEeEeeccCCC--eEEEEECCEEeccCC-ceEEEccCC------eEEEccCCCCCCeEEEEEEEeC
Q psy10160 144 GSDISIPCDVDGYPIP--QVFWYKDGQVIENDG-VHYRITESN------RLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 144 G~~v~L~C~~~g~P~p--~i~W~~~g~~l~~~~-~~~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
.+.++|.|.+.|.-+. .|.|.++|.++.... .......++ .|.|..-.......|+|++...
T Consensus 19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~ 89 (102)
T d1i1ca2 19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHE 89 (102)
T ss_dssp SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeC
Confidence 5678999999986433 599999998764210 001122233 3555544444556899999875
|
| >d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.86 E-value=0.0027 Score=48.03 Aligned_cols=63 Identities=19% Similarity=0.382 Sum_probs=38.6
Q ss_pred CCCcEEEEeEeecc-CCC-eEEEEECCEEeccCCc-eEEEccCC------eEEEccCCCCCCeEEEEEEEeC
Q psy10160 143 VGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGV-HYRITESN------RLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 143 ~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~-~~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
..+.++|.|.+.|. |.. .|.|.++|..+..... ......++ .|.|..-.......|+|.+...
T Consensus 17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~ 88 (101)
T d1cqka_ 17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHE 88 (101)
T ss_dssp TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence 35678999999995 533 5999999987643110 11122333 3455433333456899999765
|
| >d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 gamma chain ectodomain fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.81 E-value=0.02 Score=40.14 Aligned_cols=55 Identities=18% Similarity=0.462 Sum_probs=40.6
Q ss_pred eCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEe
Q psy10160 142 GVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 142 ~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N 204 (558)
.+...|.|.|... ...|.|++++..+.... ....+|-+-+...+-.|.|.|....
T Consensus 20 ~~dGsV~L~Cn~~---~k~i~W~kdg~~i~~~~-----~~~ktlnLG~~~~DPRGiY~C~g~~ 74 (86)
T d1jbja1 20 RGDGSVLLTCGLT---DKTIKWLKDGSIISPLN-----ATKNTWNLGNNAKDPRGTYQCQGAK 74 (86)
T ss_dssp SSSCEEEEECSSS---CSCEEEEETTEECCCSS-----CCSSCCEEEETTSCCEEEEEEEESS
T ss_pred ccCCeEEEEeCCC---CcEEEEecCCceecccc-----cccceeecCCcccCCCcceEcCCCc
Confidence 3567899999543 34799999998876533 2335688888888889999997543
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.81 E-value=0.009 Score=45.69 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=21.7
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEe
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
++.+|.|.+++.+|+|.|.|.+..
T Consensus 67 ~~~sL~I~~v~~~D~G~Y~C~V~~ 90 (110)
T d1ncna_ 67 DSWTLRLHNLQIKDKGLYQCIIHH 90 (110)
T ss_dssp TTTEEEECSCCGGGCEEEEEEEEE
T ss_pred CeEEEEECCCChhHCEEEEEEEEe
Confidence 556899999999999999999864
|
| >d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.78 E-value=0.0034 Score=47.58 Aligned_cols=64 Identities=19% Similarity=0.405 Sum_probs=39.5
Q ss_pred CCCcEEEEeEeecc-CCC-eEEEEECCEEeccCC-ceEEEccCC------eEEEccCCCCCCeEEEEEEEeCC
Q psy10160 143 VGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDG-VHYRITESN------RLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 143 ~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~-~~~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
.++.++|.|.+.|. |.. .|.|.++|....... .......++ .|.|..-.....-.|+|.+....
T Consensus 18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~ 90 (102)
T d1l6xa2 18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA 90 (102)
T ss_dssp GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence 46789999999995 543 599999998754310 001112233 35554433334457999998753
|
| >d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.70 E-value=0.0051 Score=46.39 Aligned_cols=65 Identities=22% Similarity=0.400 Sum_probs=39.7
Q ss_pred eCCCcEEEEeEeecc-CCC-eEEEEECCEEeccC-------CceEEEccCCeEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 142 GVGSDISIPCDVDGY-PIP-QVFWYKDGQVIEND-------GVHYRITESNRLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 142 ~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~-------~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
..++.++|.|.+.|. |.. .|.|.+++...... ++.|.. ...|.|..-.. +.|.|+|.+.......
T Consensus 18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~--~S~L~v~~~~w-~~~~ytC~V~H~~~~~ 91 (101)
T d1kcvh2 18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTL--SSNTTVASGTW-PSASVTCLVAHPKSST 91 (101)
T ss_dssp TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEE--EEEEEEETTTT-TTSCCEEEEEEGGGTE
T ss_pred cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEE--EEEEEEchhhc-CCCeEEEEEEeCCCCe
Confidence 357899999999994 433 59998877442210 111211 12466654443 3678999998865443
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=95.67 E-value=0.0033 Score=48.49 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=28.1
Q ss_pred ceEe-cCCeEEEcCCCCCCCE---EEEEEEEeCCcceE
Q psy10160 8 NYEL-NKNMLTIKRVEPERLG---AYTCQAYNGLGRAV 41 (558)
Q Consensus 8 r~~~-~~~~L~I~~v~~~D~G---~Y~C~a~n~~g~~~ 41 (558)
++.. .+++|.|.+++.+|+| .|.|.|.|..|...
T Consensus 56 ~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~~ 93 (111)
T d1biha2 56 RITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEE 93 (111)
T ss_dssp TEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSC
T ss_pred eeccccccccEEeeeEeeccCCceEEEEEEEeCCCCce
Confidence 3443 5789999999999877 79999999998763
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.67 E-value=0.002 Score=48.95 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=24.6
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcce
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRA 40 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 40 (558)
.+|.|..++.+|+|.|+|+|+|..|..
T Consensus 60 s~l~i~~~~~dd~g~ytC~A~n~~g~~ 86 (103)
T d1iama1 60 VTTTVLVRRDHHGAQFSCRTELDLRPQ 86 (103)
T ss_dssp EEEEEECCSSCSSCEEEEEEEEECGGG
T ss_pred EEEEEeeehhHCCCEEEEEEEeCCCCc
Confidence 479999999999999999999988865
|
| >d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 gamma chain ectodomain fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.01 Score=41.38 Aligned_cols=54 Identities=20% Similarity=0.536 Sum_probs=39.8
Q ss_pred CCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEe
Q psy10160 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 143 ~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N 204 (558)
....|.|.|.. ....|.|++++..+... ...+.+|-+-+...+-.|.|.|...+
T Consensus 16 ~dg~V~L~Cn~---~~k~i~W~kdg~~i~~~-----~~~~ktlnLG~~~~DPRG~Y~C~~~~ 69 (81)
T d1sy6a1 16 EDGSVLLTCDA---EAKNITWFKDGKMIGFL-----TEDKKKWNLGSNAKDPRGMYQCKGSQ 69 (81)
T ss_dssp SSSEEEEEECS---CSSEEEEEETTEEEEEE-----ESSCCCEEEEEGGGCCEEEEEEESSS
T ss_pred cCCeEEEEeCC---CCcEEEEecCCeEeecc-----cCCcceeecCCcccCCCcceEcCCCC
Confidence 46789999953 34589999999876431 13446788888888889999997543
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.43 E-value=0.009 Score=45.57 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.3
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCCc
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGLG 38 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~g 38 (558)
+|.|.+++.+|+|.|.|.+.....
T Consensus 71 ~L~I~~l~~~DsG~Y~C~v~~~~~ 94 (108)
T d1hkfa_ 71 TVTMTDLREEDSGHYWCRIYRPSD 94 (108)
T ss_dssp EEEECSCCGGGCEEEEEEEECTTT
T ss_pred EEEEhhhCCCCCEEEEEEEecCCC
Confidence 799999999999999999876444
|
| >d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=95.40 E-value=0.01 Score=43.11 Aligned_cols=58 Identities=12% Similarity=0.269 Sum_probs=36.9
Q ss_pred CcEEEEeEeeccCCC--eEEEEECCEEeccCCceEEEccCCe---EEEccCCCCCCeEEEEEEEeC
Q psy10160 145 SDISIPCDVDGYPIP--QVFWYKDGQVIENDGVHYRITESNR---LHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 145 ~~v~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~s---L~I~~v~~~D~G~Y~C~a~N~ 205 (558)
+.++|.|.+.|.-++ .+.|.++|..+.... ......+|+ +.+..+... ..|+|.+...
T Consensus 14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~-~~~~~~~gtys~~s~~~~~~~--~~yTC~V~H~ 76 (86)
T d1hxma2 14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDP-AIVISPSGKYNAVKLGKYEDS--NSVTCSVQHD 76 (86)
T ss_dssp ETTEEEEEEESCBSSCCEEEEECSSEEEECCC-EEEECTTSSEEEEEEEEETTT--TTCEEEEEET
T ss_pred CCCEEEEEEeeEECCCCEEEEEECCEEccCcE-EeeeccCCcEEEEEEEecCCC--CEEEEEEEEC
Confidence 456899999997444 478999998776533 223334442 333334443 4699999875
|
| >d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.38 E-value=0.02 Score=43.06 Aligned_cols=65 Identities=17% Similarity=0.372 Sum_probs=39.7
Q ss_pred CCCcEEEEeEeecc-CCC--eEEEEECCEEeccCCceEEEccCC------eEEEccCCCCCCeEEEEEEEeCCc
Q psy10160 143 VGSDISIPCDVDGY-PIP--QVFWYKDGQVIENDGVHYRITESN------RLHINQANATDSGEYRCVASNSYT 207 (558)
Q Consensus 143 ~G~~v~L~C~~~g~-P~p--~i~W~~~g~~l~~~~~~~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~~G 207 (558)
.++.+.|.|.+.|. |.- .+.|.+++..+...........++ .|.|..-.......|+|.+.....
T Consensus 18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~ 91 (102)
T d2fbjh2 18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSN 91 (102)
T ss_dssp CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTS
T ss_pred CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCC
Confidence 47889999999995 553 367888775543211011112222 466665554556689999987543
|
| >d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.36 E-value=0.02 Score=40.10 Aligned_cols=55 Identities=20% Similarity=0.352 Sum_probs=34.2
Q ss_pred CCCcEEEEeEeeccCCCeEEEEECCEE-eccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceee
Q psy10160 143 VGSDISIPCDVDGYPIPQVFWYKDGQV-IENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDE 210 (558)
Q Consensus 143 ~G~~v~L~C~~~g~P~p~i~W~~~g~~-l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~ 210 (558)
.|+.+.|+|-..- .-.|.|.+++.. +.. .+.++++.--..-|+|+|+|. . .|+.-
T Consensus 20 ~~~~V~L~C~t~e--E~~I~W~kd~~se~~~--------~GntltV~VkE~~~aGnYTCh-k--~g~~L 75 (87)
T d3d85d1 20 PGEMVVLTCDTPE--EDGITWTLDQSSEVLG--------SGKTLTIQVKEFGDAGQYTCH-K--GGEVL 75 (87)
T ss_dssp CCEEEEEECSSSC--CSSCEEEETTCCCCCE--------ESSEEEEEECSGGGCEEEEEE-E--TTEEE
T ss_pred CccEEEEecCCCc--ccccEEeeCCcccccc--------CCCEEEEEEEeccCCcceeEe-C--CCcEe
Confidence 4678999994422 235999998754 222 223566643344699999996 3 25553
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.25 E-value=0.0087 Score=46.32 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=25.0
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCC-cceEEEEEEEE
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGL-GRAVSWTVTLQ 48 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~-g~~~s~~l~V~ 48 (558)
.+|.|.+++.+|+|.|.|.+.... +......|+|.
T Consensus 74 ~sL~I~~l~~~DsG~Y~C~v~~~~~~~~~~v~L~V~ 109 (116)
T d1xeda_ 74 FVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVL 109 (116)
T ss_dssp EEEEECSCCGGGCEEEEEEESCGGGCCEEEEEEEEE
T ss_pred EEEEEhhhCcCCCEEEEEEEEcCCCCceEeEEEEEE
Confidence 389999999999999999886433 22234444444
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.19 E-value=0.014 Score=44.99 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=21.9
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCc
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLG 38 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g 38 (558)
+.+|.|.+++.+|+|.|.|.+....+
T Consensus 78 ~~sL~I~~v~~~DsG~Y~C~v~~~~~ 103 (118)
T d1qfoa_ 78 VCNLLLKDLKPEDSGTYNFRFEISDS 103 (118)
T ss_dssp BCCEEECSCCGGGCEEEEEEEECC-C
T ss_pred EEEEEECCCChhHCEEEEEEEEeCCC
Confidence 45799999999999999999976543
|
| >d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunomodulatory protein m144, alpha-3 domain species: Murine cytomegalovirus [TaxId: 10366]
Probab=95.13 E-value=0.014 Score=43.45 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=35.0
Q ss_pred CCcEEEEeEeeccCCC--eEEEEECCEEecc---CC---ceEEEccCCeE---EEccCCCCCCeEEEEEEEe
Q psy10160 144 GSDISIPCDVDGYPIP--QVFWYKDGQVIEN---DG---VHYRITESNRL---HINQANATDSGEYRCVASN 204 (558)
Q Consensus 144 G~~v~L~C~~~g~P~p--~i~W~~~g~~l~~---~~---~~~~~~~~~sL---~I~~v~~~D~G~Y~C~a~N 204 (558)
...++|.|.+.|+-+. .|.|.+||..+.. .+ ....-..+++. ..-.+...+...|+|.+.-
T Consensus 14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H 85 (98)
T d1u58a1 14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKG 85 (98)
T ss_dssp SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTTCGGGEEEEEEE
T ss_pred CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCCCCCEEEEEEEe
Confidence 4578999999997444 4889998765432 11 01111223321 1112344555689999864
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.04 E-value=0.011 Score=46.06 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=25.5
Q ss_pred CCceEe------cCCeEEEcCCCCCCCEEEEEEEEeCC
Q psy10160 6 SENYEL------NKNMLTIKRVEPERLGAYTCQAYNGL 37 (558)
Q Consensus 6 ~~r~~~------~~~~L~I~~v~~~D~G~Y~C~a~n~~ 37 (558)
.+|+.+ ++.+|.|.+++.+|+|.|.|.+....
T Consensus 69 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~ 106 (121)
T d2g5ra1 69 RDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGN 106 (121)
T ss_dssp TTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETT
T ss_pred ceEEEEeeeCcCCEEEEEECCCChHHCEEEEEEEEeCC
Confidence 456664 23589999999999999999997644
|
| >d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.04 E-value=0.0039 Score=47.30 Aligned_cols=66 Identities=12% Similarity=0.231 Sum_probs=38.6
Q ss_pred eeCCCcEEEEeEeecc-CCC---eEEEEECCEEeccCCc-eEEEccCCeE---EEccCCCC---CCeEEEEEEEeCC
Q psy10160 141 FGVGSDISIPCDVDGY-PIP---QVFWYKDGQVIENDGV-HYRITESNRL---HINQANAT---DSGEYRCVASNSY 206 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~-P~p---~i~W~~~g~~l~~~~~-~~~~~~~~sL---~I~~v~~~---D~G~Y~C~a~N~~ 206 (558)
...++.++|.|.+.|. |.+ .+.|.++|..+..... ......+++. ..-.+..+ ..-.|+|.+....
T Consensus 13 ~~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~ 89 (103)
T d1i1ca1 13 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA 89 (103)
T ss_dssp TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred hccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCC
Confidence 3457789999999984 543 6889999987654210 1111223321 11134433 2346999998753
|
| >d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=94.92 E-value=0.011 Score=44.91 Aligned_cols=78 Identities=12% Similarity=0.188 Sum_probs=44.8
Q ss_pred CcEEEec-CCceEeeCCCcEEEEeEeecc-CCC-eEEEEECCEEeccCCceE-EEccCC------eEEEccCCCCC-CeE
Q psy10160 129 PVKVNIT-LETQVFGVGSDISIPCDVDGY-PIP-QVFWYKDGQVIENDGVHY-RITESN------RLHINQANATD-SGE 197 (558)
Q Consensus 129 p~~~~~~-~~~~~v~~G~~v~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~~~-~~~~~~------sL~I~~v~~~D-~G~ 197 (558)
+|.+.+- |.......++.++|.|.+.|. |.. .+.|.++|..+....... ....++ .|.+. .+| ...
T Consensus 8 ~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~---~~~w~~~ 84 (107)
T d1hxmb2 8 SPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVP---EKSLDKE 84 (107)
T ss_dssp SCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEEC---TGGGGSC
T ss_pred CCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEe---cccCCCe
Confidence 4444433 333345667889999999995 433 489999997665321000 001122 35443 333 237
Q ss_pred EEEEEEeCCcee
Q psy10160 198 YRCVASNSYTSD 209 (558)
Q Consensus 198 Y~C~a~N~~G~~ 209 (558)
|+|.+.......
T Consensus 85 ytC~V~H~s~~~ 96 (107)
T d1hxmb2 85 HRCIVRHENNKN 96 (107)
T ss_dssp EEEEEEETTSGG
T ss_pred EEEEEEECCCCC
Confidence 999998764433
|
| >d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.75 E-value=0.046 Score=39.34 Aligned_cols=34 Identities=24% Similarity=0.535 Sum_probs=30.4
Q ss_pred ceE-ecCCeEEEcCCCCCCCEEEEEEEEeCCcceE
Q psy10160 8 NYE-LNKNMLTIKRVEPERLGAYTCQAYNGLGRAV 41 (558)
Q Consensus 8 r~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 41 (558)
.|. +.+|+|.|..+...|+|+|.-.+.+..|...
T Consensus 56 ~y~i~~nGtLkIK~L~~~d~GtYkv~vYd~~Gk~v 90 (101)
T d1hnfa1 56 TYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNV 90 (101)
T ss_dssp TEEECTTSCEEECSCCGGGCEEEEEEEEETTSCEE
T ss_pred eEEEccCCcEEeeeeeecCCCcEEEEEEcCCCcEe
Confidence 355 4789999999999999999999999999874
|
| >d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.72 E-value=0.0095 Score=45.03 Aligned_cols=71 Identities=13% Similarity=0.208 Sum_probs=40.2
Q ss_pred CCceEeeCCCcEEEEeEeecc-CC---CeEEEEECCEEeccCCceE-EEccCC------eEEEccCCCCCCeEEEEEEEe
Q psy10160 136 LETQVFGVGSDISIPCDVDGY-PI---PQVFWYKDGQVIENDGVHY-RITESN------RLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 136 ~~~~~v~~G~~v~L~C~~~g~-P~---p~i~W~~~g~~l~~~~~~~-~~~~~~------sL~I~~v~~~D~G~Y~C~a~N 204 (558)
|....+..++.++|.|.+.|. |. -.+.|.+++.......... ....++ .|.|..-..+....|+|++.+
T Consensus 8 Ps~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H 87 (103)
T d1fp5a1 8 PSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTH 87 (103)
T ss_dssp CCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEEC
T ss_pred cCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEE
Confidence 333335568889999999985 54 2567888876654321111 112233 233322222235689999987
Q ss_pred CC
Q psy10160 205 SY 206 (558)
Q Consensus 205 ~~ 206 (558)
..
T Consensus 88 ~~ 89 (103)
T d1fp5a1 88 PH 89 (103)
T ss_dssp SS
T ss_pred CC
Confidence 53
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.63 E-value=0.015 Score=43.43 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=26.8
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcce-EEEEEEEE
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGRA-VSWTVTLQ 48 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~s~~l~V~ 48 (558)
..+.|.+|+.+|+|.|+|...+..... .|-.|.|.
T Consensus 62 a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~Sdpl~L~ 97 (99)
T d1ucta1 62 PEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELV 97 (99)
T ss_dssp CEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEE
T ss_pred EEEEecCCCHHHCceEEEEEECCCcccCCCCCEEEE
Confidence 469999999999999999999876543 24444443
|
| >d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.33 E-value=0.015 Score=43.89 Aligned_cols=66 Identities=14% Similarity=0.238 Sum_probs=37.8
Q ss_pred CCCcEEEEeEeeccCCC--eEEEEECCEEeccCCceEEEccCC------eEEEccCCCCCCeEEEEEEEeCCcee
Q psy10160 143 VGSDISIPCDVDGYPIP--QVFWYKDGQVIENDGVHYRITESN------RLHINQANATDSGEYRCVASNSYTSD 209 (558)
Q Consensus 143 ~G~~v~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~~G~~ 209 (558)
.++.++|.|.+.|.-+. .|.|.+++..............++ .|.|..-.. ....|+|.+....+..
T Consensus 19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w-~~~~ytC~V~H~~~~~ 92 (103)
T d1c5ch2 19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GTQTYICNVNHKPSNT 92 (103)
T ss_dssp ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGG-GTCCCEEEEEEGGGTE
T ss_pred CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEECCCeECCCCCEEEEEEEEECcccc-CCCeEEEEEEeCCCCE
Confidence 46789999999996332 489987764321100001112233 355554332 2457999999865544
|
| >d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 delta chain ectodomain fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.29 E-value=0.038 Score=37.55 Aligned_cols=62 Identities=18% Similarity=0.462 Sum_probs=37.7
Q ss_pred CCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy10160 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNSYTSDENAVTIRV 217 (558)
Q Consensus 143 ~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 217 (558)
..+.|.|.|. -+|.|++++..+. ...+.+|-+-+...+-.|.|.|.+.......+.++++.+
T Consensus 8 ~e~~V~L~Cn------~si~W~k~~~~~~-------~~~~k~lnLG~~~~DPRG~Y~C~~~e~~~~k~~~lQVyY 69 (74)
T d1xiwb_ 8 LEDRVFVNCN------TSITWVEGTVGTL-------LSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHY 69 (74)
T ss_dssp ETTEEEEECS------SCEEEEEECCCEE-------EGGGTEEEEEEGGGCCEEEEEEC--------CEEEEEEE
T ss_pred cCCeEEEEcc------CeeEEecCCcccc-------cCCccEeecCCcccCCCcceEeCCcccccccCccEEEEE
Confidence 4568999994 3699999764332 223456777777778889999987755555555555554
|
| >d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: B and T lymphocyte attenuator, Btla species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.19 E-value=0.021 Score=39.99 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=26.3
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCCcceEEEEEEE
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGLGRAVSWTVTL 47 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~l~V 47 (558)
.|.+..+.++|.|.|+|.|.-..+-..+..+++
T Consensus 69 vLhF~pvl~sDnGsYrCSanf~s~vieSHSvti 101 (104)
T d1xaua_ 69 VLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTI 101 (104)
T ss_dssp EEEETTCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred EEEeeeeeecCCCceEEecCCChhheecceEEE
Confidence 699999999999999999987776655444444
|
| >d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma species: Mouse (Mus musculus), gamma2 [TaxId: 10090]
Probab=93.94 E-value=0.03 Score=43.37 Aligned_cols=66 Identities=15% Similarity=0.261 Sum_probs=40.5
Q ss_pred eeCCCcEEEEeEeecc-CC---CeEEEEECCEEeccCCc-eEEEccCC------eEEEccCCCCCCeEEEEEEEeCC
Q psy10160 141 FGVGSDISIPCDVDGY-PI---PQVFWYKDGQVIENDGV-HYRITESN------RLHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~-P~---p~i~W~~~g~~l~~~~~-~~~~~~~~------sL~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
...++.++|.|.+.|. |. ..+.|.++|..+..... ......++ .|.|..-.......|+|.+....
T Consensus 29 ~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~ 105 (119)
T d1igtb3 29 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKD 105 (119)
T ss_dssp HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTT
T ss_pred cccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECC
Confidence 4568899999999995 53 35889999988754211 11122333 23332222234468999998754
|
| >d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.35 E-value=0.032 Score=42.06 Aligned_cols=66 Identities=20% Similarity=0.319 Sum_probs=39.9
Q ss_pred eeCCCcEEEEeEeecc-CC---CeEEEEECCEEeccCCc-eEEEccCCe------EEEccCCCCCCeEEEEEEEeCC
Q psy10160 141 FGVGSDISIPCDVDGY-PI---PQVFWYKDGQVIENDGV-HYRITESNR------LHINQANATDSGEYRCVASNSY 206 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~-P~---p~i~W~~~g~~l~~~~~-~~~~~~~~s------L~I~~v~~~D~G~Y~C~a~N~~ 206 (558)
...++.++|.|.+.|. |. ..+.|.+++..+..... ......+++ |.|..-..+..-.|+|.+....
T Consensus 15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~ 91 (105)
T d1l6xa1 15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKA 91 (105)
T ss_dssp HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTT
T ss_pred hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCC
Confidence 4568899999999985 54 35779999987754210 111123332 3333222223458999998754
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.12 E-value=0.025 Score=41.78 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.0
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCc
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLG 38 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g 38 (558)
..+.|.+|+.+|+|.|+|...+..+
T Consensus 57 a~F~i~~v~~~~~G~Y~C~y~~~~~ 81 (95)
T d1olla1 57 VKFYIPDMNSRMAGQYSCIYRVGEL 81 (95)
T ss_dssp EEEEESSCCGGGCEEEEEEEEETTE
T ss_pred EEEEEeeeecCCCceEEEEeCCCCC
Confidence 3799999999999999999887654
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=92.95 E-value=0.049 Score=41.19 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=24.2
Q ss_pred CCceEe----cCCeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 6 SENYEL----NKNMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 6 ~~r~~~----~~~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
.+|+.. ++.+|.|.+++++|+|.|.|.+...
T Consensus 59 ~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~ 93 (107)
T d1ospl1 59 PSRFSGSDSGKDYTLSITSLQTEDVATYFCQQYWS 93 (107)
T ss_dssp CTTEEEECSSSSEEEEESSCCGGGCSEEEEEECSS
T ss_pred ccccceecCCCeEEeEEcccccccCCcEEEeeccC
Confidence 345554 3358999999999999999987643
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=92.43 E-value=0.065 Score=41.03 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=20.4
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
.+|.|.+++.+|+|.|.|.+...
T Consensus 73 ~~L~I~~~~~~Dsg~YyCa~~~~ 95 (115)
T d1i9ea_ 73 FHLRKASVHWSDSAVYFCAVSGF 95 (115)
T ss_dssp CCEEESSCCGGGCEEEEEEEEET
T ss_pred EEEecccccccccceecccccCC
Confidence 48999999999999999987643
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=92.36 E-value=0.043 Score=42.06 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.9
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
.+|.|.+++.+|+|.|.|.+...
T Consensus 72 ~sL~i~~~~~~Dsg~Y~Ca~~~~ 94 (114)
T d2cdea1 72 SSLHITASQLSDSASYICVVSDR 94 (114)
T ss_dssp EEEEECSCCGGGCSEEEEEEECS
T ss_pred cccEEcccChhhCcccceeeecC
Confidence 47999999999999999999863
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.28 E-value=0.052 Score=41.55 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=20.4
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCC
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGL 37 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~ 37 (558)
+|.|.+++++|+|.|.|.+....
T Consensus 74 ~L~I~~~~~~Dsg~YyCa~~~~~ 96 (114)
T d3bp5a1 74 HMNILDTRRNDSGIYLCGAISLH 96 (114)
T ss_dssp EEEESSCCGGGCEEEEEEEECSS
T ss_pred EEEECccCcCCCeEEEEEEEeCC
Confidence 69999999999999999887543
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.08 E-value=0.056 Score=41.25 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.2
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCC
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGL 37 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~ 37 (558)
+|.|.+++.+|+|.|.|.+....
T Consensus 77 ~Lti~~l~~~Dsg~Y~Cav~~~~ 99 (113)
T d1smoa_ 77 RVRMVNLQVEDSGLYQCVIYQPP 99 (113)
T ss_dssp EEEECSCCGGGCEEEEEEECCTT
T ss_pred EEEEccCCcccCceEEEEEECCC
Confidence 69999999999999999886543
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=92.07 E-value=0.048 Score=41.15 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=24.1
Q ss_pred cCCceEe----cCCeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 5 RSENYEL----NKNMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 5 ~~~r~~~----~~~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
..+|+.. ++.+|.|.+++.+|+|.|.|.+.+.
T Consensus 58 ~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~ 93 (106)
T d1i8ka_ 58 VPSRFSSSGTGTDFVFTIENTLSEDVGDYYCLQSFN 93 (106)
T ss_dssp SCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred CCcceeEeCCCCeeeecccCCccccCEEEeEecCcc
Confidence 3445553 2347999999999999999987643
|
| >d1i1ra1 b.1.2.1 (A:2-101) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor gp130 cytokine-binding domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.96 E-value=1.5 Score=31.62 Aligned_cols=70 Identities=14% Similarity=0.264 Sum_probs=48.9
Q ss_pred ecCCceEeeCCCcEEEEeEeecc-------CCCeEEEEECCEEeccCCceEEEccC--CeEEEccCCCCCCeEEEEEEEe
Q psy10160 134 ITLETQVFGVGSDISIPCDVDGY-------PIPQVFWYKDGQVIENDGVHYRITES--NRLHINQANATDSGEYRCVASN 204 (558)
Q Consensus 134 ~~~~~~~v~~G~~v~L~C~~~g~-------P~p~i~W~~~g~~l~~~~~~~~~~~~--~sL~I~~v~~~D~G~Y~C~a~N 204 (558)
+.+...++..|++++..|.+.-+ -.+.+.|..++..++.. .|+..+. .+++|.+++... ..-+|....
T Consensus 8 I~p~~Pvv~lGS~~TAsCtI~~~c~~~~~~~A~~I~Wkl~~~~~P~~--qy~~ln~T~~Svtl~~l~~~~-a~L~C~~l~ 84 (100)
T d1i1ra1 8 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE--QYTIINRTASSVTFTDIASLN-IQLTCNILT 84 (100)
T ss_dssp EESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGG--GCEEEETTEEEEEECSCCCSE-EEEEEEEEE
T ss_pred EecCCCeEECCCCEEEEEEECchhcCccCCCcceEEEEECCEECCch--heEccCCcEEEEEEccccCCc-ceeEEEEee
Confidence 45667788999999999998632 23579999999998863 4444333 368888886543 455676555
Q ss_pred CC
Q psy10160 205 SY 206 (558)
Q Consensus 205 ~~ 206 (558)
..
T Consensus 85 ~g 86 (100)
T d1i1ra1 85 FG 86 (100)
T ss_dssp TT
T ss_pred cC
Confidence 43
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=91.87 E-value=0.05 Score=39.99 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.5
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
.+|.|.+++++|+|.|.|.+...
T Consensus 57 ~sL~I~~~~~~Dsg~YyCa~~~~ 79 (94)
T d2gj6d1 57 VSLLIRDSQPSDSATYLCAVTTD 79 (94)
T ss_dssp EEEEECSCCGGGCEEEEEEEESS
T ss_pred EeEEeeccccCcCccceeeEecC
Confidence 37999999999999999988754
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=91.65 E-value=0.096 Score=39.99 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.8
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
.+|.|.+++.+|+|.|.|.+..
T Consensus 79 ~~L~I~~~~~~Dsg~Y~Ca~~~ 100 (115)
T d2atpb1 79 PFLSIMNVKPEDSDFYFCATVG 100 (115)
T ss_dssp CEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEeecccCCCCCcEEEEeEcC
Confidence 4799999999999999998763
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=91.60 E-value=0.056 Score=40.79 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=20.8
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
+.+|.|.+++++|+|.|.|.+.+.
T Consensus 70 ~~~L~I~~l~~~Dsa~YyCa~~~~ 93 (107)
T d1c5cl1 70 DYSLTISSLESEDFADYYCLQYAS 93 (107)
T ss_dssp EEEEEESSCCGGGCSEEEEEECSS
T ss_pred EEEEEEhhhcccCCeEEEEecCcC
Confidence 358999999999999999987653
|
| >d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=91.60 E-value=0.02 Score=43.74 Aligned_cols=63 Identities=11% Similarity=0.249 Sum_probs=35.4
Q ss_pred CCCcEEEEeEeecc-CC-CeEEEEECCEEeccCCceEEEccCCe---EEEccCCCCC---CeEEEEEEEeCC
Q psy10160 143 VGSDISIPCDVDGY-PI-PQVFWYKDGQVIENDGVHYRITESNR---LHINQANATD---SGEYRCVASNSY 206 (558)
Q Consensus 143 ~G~~v~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~s---L~I~~v~~~D---~G~Y~C~a~N~~ 206 (558)
.++.++|.|.+.|. |. ..|.|.+++..-.... .-....+++ ...-.|..+| .-.|+|.+....
T Consensus 26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~~~~-~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~ 96 (111)
T d1pfca_ 26 SKKKVSLTCMITGFYPADINVEWDSSEPSDYKNT-PPVFDTDGSFFLYSRLKVDTDAWNNGESFTCSVMHEA 96 (111)
T ss_dssp CTTSCCEEEEEESCCSSCCEEESSSCCTTTEEEE-EEECCSSCCCEEEEEECCCSSCCHHHHCCEEEEEETT
T ss_pred cCCceEEEEEEEeeECCCcEEEEeeCCCCCcEEc-ccEECCCCcEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence 46678999999995 32 3599988763211000 001122332 2223455555 447999998753
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=91.36 E-value=0.091 Score=39.55 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.3
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEe
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
...|.|.+++++|+|.|.|.+..
T Consensus 70 ~~~L~I~~l~~~DSa~YyCa~~~ 92 (107)
T d1kcvl1 70 DFTLTISSVQADDDADYYCGQSY 92 (107)
T ss_dssp EEEEEESSCCGGGCEEEEEEECS
T ss_pred eeecEEHhheecCCceEEEEecC
Confidence 35899999999999999998764
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.98 E-value=0.14 Score=38.66 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.1
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
+..|.|.+++.+|+|.|.|.....
T Consensus 72 ~~~L~I~~~~~~Dsa~YyCa~~~~ 95 (110)
T d1oaql_ 72 KAALTITGAQTEDEAIYFCALWYS 95 (110)
T ss_dssp EEEEEEESCCGGGCEEEEEEEEET
T ss_pred ceeeecCCCCccccEeEEEEcccC
Confidence 358999999999999999998753
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=90.89 E-value=0.087 Score=39.70 Aligned_cols=24 Identities=42% Similarity=0.650 Sum_probs=20.6
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
+.+|.|.+++++|+|.|.|.+.+.
T Consensus 70 ~~~L~I~~~~~~Dsa~YyCa~~~~ 93 (107)
T d1j1pl_ 70 DFTLSINSVETEDFGMYFCQQANS 93 (107)
T ss_dssp EEEEEESSCCGGGCEEEEEEECSS
T ss_pred EEEEEEcccCcCCCEEEEEEcCCC
Confidence 358999999999999999977643
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=90.89 E-value=0.064 Score=41.00 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=20.9
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGL 37 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~ 37 (558)
.+|.|.+++.+|+|.|.|.+....
T Consensus 74 ~~L~I~~~~~~Dsg~YyCa~~~~~ 97 (114)
T d2ak4d1 74 FNFTITASQVVDSAVYFCALSGFY 97 (114)
T ss_dssp EEEEESSCCGGGCEEEEEEEECSB
T ss_pred EEEeecccccccCCCceEeCCCCC
Confidence 379999999999999999876543
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.84 E-value=0.063 Score=41.65 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=19.4
Q ss_pred eEEEcCCCCCCCEEEEEEEEe
Q psy10160 15 MLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n 35 (558)
+|+|.+++.+|+|.|.|.+..
T Consensus 83 ~L~I~~~~~~Dsg~YyCa~~~ 103 (122)
T d1nezg_ 83 VLTLNKFSKENEGYYFCSVIS 103 (122)
T ss_dssp EEEESSCCGGGCEEEEEEEEE
T ss_pred EEEEcccccCCCEEEEeeEeC
Confidence 799999999999999998764
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.78 E-value=0.043 Score=41.39 Aligned_cols=26 Identities=12% Similarity=0.126 Sum_probs=21.4
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCCcce
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGLGRA 40 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~g~~ 40 (558)
.|.|...+.+|.|.|+|+|.|..|..
T Consensus 64 ~l~~~~~~~d~g~~ytC~A~n~~~~~ 89 (106)
T d1zxqa1 64 TFNSTADREDGHRNFSCLAVLDLMSR 89 (106)
T ss_dssp EEEEECCGGGGGCEEEEEEEEECGGG
T ss_pred EEEEeeehhcCCcEEEEEEEecCCCC
Confidence 57788777888889999999987643
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.66 E-value=0.076 Score=40.57 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.6
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
.+|.|.+++.+|+|.|.|.+...
T Consensus 77 ~~L~I~~l~~~Dsg~YyCa~~~~ 99 (114)
T d1akjd_ 77 FVLTLSDFRRENEGYYFCSALSN 99 (114)
T ss_dssp EEEEESSCCGGGCEEEEEEEEET
T ss_pred hhcEEccCCCCCCEEEeEeEcCC
Confidence 47999999999999999998753
|
| >d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.63 E-value=0.0032 Score=47.58 Aligned_cols=65 Identities=14% Similarity=0.236 Sum_probs=37.7
Q ss_pred eeCCCcEEEEeEeecc--CC-CeEEEEECCEEeccCCceEEEccCCe---EEEccCCCCC---CeEEEEEEEeCC
Q psy10160 141 FGVGSDISIPCDVDGY--PI-PQVFWYKDGQVIENDGVHYRITESNR---LHINQANATD---SGEYRCVASNSY 206 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~--P~-p~i~W~~~g~~l~~~~~~~~~~~~~s---L~I~~v~~~D---~G~Y~C~a~N~~ 206 (558)
+..++.++|.|.+.|. |. ..|.|.+++......... ....+++ ...-.+..+| .-.|+|.+....
T Consensus 15 ~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~~~~~-~~~~~gt~s~~S~L~v~~~~W~~g~~ftC~V~H~~ 88 (101)
T d1ow0a1 15 LLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPP-ERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPE 88 (101)
T ss_dssp HHHCSSCCCEEEETTCCSCCCCCCCBSSCSSCCCEECCC-CCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCSS
T ss_pred HccCCCeEEEEEEeCCCCCcceEEEEEECCceeeeecce-EECCCCCEEEEEEEEEcHHHcCCCCeEEEEEEeCC
Confidence 4568899999999986 33 259999877533211101 1122332 1222344443 569999998653
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=90.62 E-value=0.075 Score=40.73 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.5
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCC
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGL 37 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~ 37 (558)
+|+|.+++.+|+|.|.|......
T Consensus 77 ~L~I~~~~~~Dsg~YyCa~~~~~ 99 (116)
T d1tvda_ 77 HLVISPVRTEDSATYYCAFTLPP 99 (116)
T ss_dssp EEEESSCCGGGCEEEEEEEECTT
T ss_pred eeeecCccccccccceeeEecCC
Confidence 79999999999999999887543
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=90.48 E-value=0.15 Score=38.93 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=21.5
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCc
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLG 38 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g 38 (558)
.+|.|.+++.+|+|.|.|.+....+
T Consensus 71 ~~L~I~~~~~~Dsa~YyCa~~~~~~ 95 (115)
T d1ogad1 71 SSLHITAAQPGDTGLYLCAGAGSQG 95 (115)
T ss_dssp EEEEESSCCGGGCEEEEEEEECTTS
T ss_pred eeeeecCCCccceeeEcccccCCCC
Confidence 4899999999999999998875443
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=90.39 E-value=0.13 Score=39.02 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.6
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
+..|.|.+++++|+|.|.|.+...
T Consensus 74 ~~~L~I~~~~~~DsA~YyCa~~~~ 97 (111)
T d2gsia1 74 DFTLNIHPVEEEDAATYYCSHIRE 97 (111)
T ss_dssp EEEEEESSCCGGGCEEEEEEECSS
T ss_pred chhcccccccccCCceEEEEECCC
Confidence 348999999999999999987643
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=90.30 E-value=0.095 Score=39.77 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.4
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
..|.|.+++.+|+|.|.|.+.+.
T Consensus 75 ~~L~I~~~~~~Dsa~YyCa~~~~ 97 (111)
T d1j05a_ 75 FTLIIDPVEADDVATYYCQQTNE 97 (111)
T ss_dssp EEEEESSCCGGGCEEEEEEECSS
T ss_pred EEEEEcccccccCccEEEeecCC
Confidence 48999999999999999987653
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=90.27 E-value=0.094 Score=39.92 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.7
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCc
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLG 38 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g 38 (558)
.+|.|.+++.+|+|.|.|.+....+
T Consensus 72 ~~L~i~~~~~~Dsg~YyCa~~~~~~ 96 (113)
T d2bnqd1 72 STLYIAASQPGDSATYLCAVRPTSG 96 (113)
T ss_dssp EEEEESSCCGGGCEEEEEEEEESSS
T ss_pred EEeeeecCCCCCCcEEeEeEecCCC
Confidence 4899999999999999999976443
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=90.25 E-value=0.15 Score=38.02 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.9
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
...|.|.+++++|+|.|.|.+.+.
T Consensus 67 ~~~L~I~~l~~~Dsa~YyCA~~~~ 90 (103)
T d8faba1 67 TVTLTISGVQAEDEADYYCQAWDN 90 (103)
T ss_dssp EEEEEETTCCGGGCEEEEEEEEET
T ss_pred ccCceEcCcchhHCceEEeeecCC
Confidence 358999999999999999987654
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=90.15 E-value=0.089 Score=39.62 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=19.6
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
..|.|.+++++|+|.|.|.+.+
T Consensus 71 ~~L~I~~l~~~DsA~YyCa~~~ 92 (107)
T d1tjgl1 71 FTLTISTLRPEDFATYYCQQLH 92 (107)
T ss_dssp EEEEESSCCGGGCSEEEEEECS
T ss_pred EEEEeccceeCcCceEEEEECc
Confidence 4799999999999999997654
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=90.14 E-value=0.13 Score=38.65 Aligned_cols=23 Identities=43% Similarity=0.678 Sum_probs=20.0
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
.+|.|.+++++|+|.|.|-..+.
T Consensus 71 ~~L~i~~l~~~Dsa~YyCA~~~~ 93 (108)
T d1jhll_ 71 FTLTISSLEPEDFAMYICQQHNE 93 (108)
T ss_dssp EEEEECSCCTTCCSEEEEEECSS
T ss_pred EEeEeeeeEeccceEEEEeeCCC
Confidence 37999999999999999976653
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=90.14 E-value=0.091 Score=39.62 Aligned_cols=22 Identities=50% Similarity=0.887 Sum_probs=19.7
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
..|.|.+++++|+|.|.|.+.+
T Consensus 72 ~~L~I~~~~~~Dsa~YyCa~~~ 93 (108)
T d2fx7l1 72 FTLTISRLEPEDFAVYYCQQYG 93 (108)
T ss_dssp EEEEESSCCGGGCSEEEEEECS
T ss_pred EEEEehHheecccEEEeeecCC
Confidence 4799999999999999998754
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=90.14 E-value=0.17 Score=38.24 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=21.2
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGL 37 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~ 37 (558)
.+|.|.+++.+|+|.|.|.+....
T Consensus 72 ~~L~I~~~~~~Dsa~YyCA~~~~~ 95 (111)
T d1rzfl1 72 ATLGITGLQTGDEADYYCGTWDSS 95 (111)
T ss_dssp EEEEESSCCGGGCSEEEEEEEETT
T ss_pred eeeEEeeeccccCcceEEeecCCC
Confidence 589999999999999999887543
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=90.01 E-value=0.089 Score=40.07 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=19.6
Q ss_pred eEEEcCCCCCCCEEEEEEEEe
Q psy10160 15 MLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n 35 (558)
+|.|.+++.+|+|.|.|.+..
T Consensus 67 ~L~I~~l~~~Dsa~YyCa~~~ 87 (113)
T d1vesa_ 67 SLRISDLRVEDSGTYKCQAFY 87 (113)
T ss_dssp EEEECSCCGGGCEEEEEEEEE
T ss_pred eeeecccccCCcceEeeeeec
Confidence 799999999999999999864
|
| >d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=89.98 E-value=0.043 Score=40.57 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=22.2
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCCcc
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGLGR 39 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~g~ 39 (558)
.+|.|.+++++|+|.|.|-+....|.
T Consensus 64 ~~L~I~~~~~~Dsa~YyCA~~~~~g~ 89 (96)
T d1ymmd1 64 SSLLITASRAADTASYFCATDTTSGT 89 (96)
T ss_dssp CCBCCSSCCSTTCSCCEEEEEETTSC
T ss_pred cccCcCCCCcccCEEEeEeEecCCCC
Confidence 47999999999999999988765543
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=89.95 E-value=0.098 Score=39.40 Aligned_cols=23 Identities=48% Similarity=0.767 Sum_probs=20.2
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEe
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
+..|.|.+++++|+|.|.|.+..
T Consensus 70 ~~~L~I~~~~~~DsA~YyCa~~~ 92 (107)
T d1mexl1 70 DFTLTINNVQSEDLAEYFCQQYN 92 (107)
T ss_dssp EEEEEESSCCGGGCSEEEEEECS
T ss_pred eeeeeechhheecceeEEEeECC
Confidence 35799999999999999998654
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=89.83 E-value=0.11 Score=39.29 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=20.3
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
.+|.|.+++.+|+|.|.|.+...
T Consensus 69 ~~L~I~~~~~~Dsa~YyCa~~~~ 91 (110)
T d2esvd1 69 STLILPHATLRDTAVYYCIVVRS 91 (110)
T ss_dssp EEEEESSCCGGGCEEEEEEEEES
T ss_pred eeehhcccccCCceEEEEEEeCC
Confidence 47999999999999999988643
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=89.82 E-value=0.11 Score=38.99 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.9
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
..|.|.+++++|+|.|.|.+..
T Consensus 70 ~~L~I~~~~~~Dsa~YyCa~~~ 91 (106)
T d1op3k1 70 FTLTISGLQFDDFATYHCQHYA 91 (106)
T ss_dssp EEEEEESCCGGGCSEEEEEEEC
T ss_pred EEEEEccccccCCCcEeeeeCC
Confidence 4799999999999999998764
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=89.67 E-value=0.1 Score=39.72 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=20.9
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGL 37 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~ 37 (558)
.+|.|.+++++|+|.|.|.+....
T Consensus 71 ~~L~I~~~~~~Dsa~YyCa~~~~~ 94 (113)
T d1h5ba_ 71 STLHIRDAQLEDSGTYFCAAEASS 94 (113)
T ss_dssp EEEEECSCCGGGCEEEEEEEECSS
T ss_pred eEEEECCCCHhHCEEEEEEecCCC
Confidence 379999999999999999887543
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=89.63 E-value=0.11 Score=39.76 Aligned_cols=23 Identities=13% Similarity=0.184 Sum_probs=20.4
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
..|.|.+++++|+|.|.|.+...
T Consensus 73 ~~L~I~~~~~~Dsg~YyCa~~~~ 95 (115)
T d1lp9e1 73 FHLQKSSAQLSDSALYYCALFLA 95 (115)
T ss_dssp CCEEESSCCGGGCEEEEEEEEEC
T ss_pred EEeeccccccccCccceEEEEcC
Confidence 46999999999999999987654
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=89.62 E-value=0.16 Score=38.49 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=19.3
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
..|.|.+++++|+|.|.|...+
T Consensus 76 ~~L~I~~~~~eDsAvYYC~~~~ 97 (112)
T d1ncwl1 76 FTLKISRVEAEDLGVYYCWQGT 97 (112)
T ss_dssp EEEEESSCCGGGCEEEEEEECS
T ss_pred EEEEECccccCcCEeEEEEcCC
Confidence 4799999999999999996544
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=89.56 E-value=0.13 Score=38.64 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=20.3
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
.+|.|.+++++|+|.|.|.....
T Consensus 71 ~~L~I~~~~~~Dsa~YyCa~~~~ 93 (107)
T d1d5il1 71 YSLTISSLEYEDMGIYYCLQYDE 93 (107)
T ss_dssp EEEEESSCCGGGCEEEEEEECSS
T ss_pred EEccccccCCcCCEEEEeeeccC
Confidence 58999999999999999977643
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.55 E-value=0.13 Score=38.55 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=19.5
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
..|.|.+++++|+|.|.|....
T Consensus 70 ~~L~I~~~~~~Dsa~YyCa~~~ 91 (106)
T d1lk3l1 70 FTLTIDPVEADDTAIYFCQQSW 91 (106)
T ss_dssp EEEEESSCCGGGCEEEEEEECS
T ss_pred EEeEECCcChhhCCCccccccc
Confidence 4899999999999999996653
|
| >d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.46 E-value=0.17 Score=38.21 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=20.7
Q ss_pred eEEEcCCCCCCCEEEEEEEEeCCc
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNGLG 38 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~~g 38 (558)
+|+|.+++.+|+|.|.|.......
T Consensus 73 ~lti~~L~~eDsa~YyCa~~~~~~ 96 (110)
T d1u9ka_ 73 QVQMTDLQVTDSGLYRCVIYHPPN 96 (110)
T ss_dssp EEEECSCCGGGCEEEEEEEECTTS
T ss_pred EEEECccccCCCEEEEEEEeCCCC
Confidence 699999999999999998865443
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=89.45 E-value=0.26 Score=37.10 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.7
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
.+|.|.+++.+|+|.|.|.+..
T Consensus 73 ~~L~i~~~~~~Dsa~YyCa~~~ 94 (111)
T d2esve1 73 STLKVQPAELEDSGVYFCASSQ 94 (111)
T ss_dssp EEEEESSCCGGGCEEEEEEEES
T ss_pred EEEEECCcccCCCceEEEeeeC
Confidence 4799999999999999998764
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=89.20 E-value=0.1 Score=39.41 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.3
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
.+|.|.+++++|+|.|.|.+...
T Consensus 71 ~~L~I~~~~~~Dsa~YyCa~~~~ 93 (110)
T d1u3ha1 71 LSLHIADSQPGDSATYFCAASAN 93 (110)
T ss_dssp EEEEESSCCTTSCSEEEECCEES
T ss_pred eEeEeccCCCCCceeEeeeecCC
Confidence 37999999999999999988643
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=89.06 E-value=0.23 Score=37.74 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.0
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
+..|.|.+++.+|+|.|.|.+...
T Consensus 71 ~~~L~I~~v~~~DsA~YyCA~~~~ 94 (114)
T d2rhea_ 71 SASLAISGLESEDEADYYCAAWND 94 (114)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEET
T ss_pred eeeeEecccCcccCceEEEeecCC
Confidence 358999999999999999988653
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=88.98 E-value=0.11 Score=39.51 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.9
Q ss_pred eEEEcCCCCCCCEEEEEEEEeC
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
+|.|.+++++|+|.|.|.+...
T Consensus 66 ~L~I~~l~~~Dsa~YyCA~~~~ 87 (112)
T d1sq2n_ 66 SLRINDLTVEDGGTYRCGLGVA 87 (112)
T ss_dssp EEEECSCCGGGCEEEEEEECBT
T ss_pred eeEecCCcCccCEEEeEEEecC
Confidence 7999999999999999987654
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=88.89 E-value=0.081 Score=39.80 Aligned_cols=22 Identities=32% Similarity=0.717 Sum_probs=19.9
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
.+|.|.+++++|+|.|.|.+.+
T Consensus 70 ~~L~I~~~~~~DsA~YyCa~~~ 91 (106)
T d1a0ql1 70 YSFSISNLEPEDIATYYCLQYY 91 (106)
T ss_dssp EEEEECSCCGGGCSEEEEEECS
T ss_pred eeeEehhhcccCCEeEEEEEeC
Confidence 4899999999999999998764
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=88.75 E-value=0.12 Score=39.50 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=20.3
Q ss_pred eEEEcCCCCCCCEEEEEEEEeC
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
.|.|.+++++|+|.|.|.+...
T Consensus 74 ~L~I~~~~~~Dsa~YyCa~~~~ 95 (115)
T d1j8hd1 74 HLTKPSAHMSDAAEYFCAVSES 95 (115)
T ss_dssp CEEESSCCGGGCEEEEEEEESS
T ss_pred EEeeccccccCCccceeeecCC
Confidence 6999999999999999998764
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=88.66 E-value=0.24 Score=37.32 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.0
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
.+|.|.+++.+|+|.|.|.+..
T Consensus 72 ~~L~I~~~~~~Dsa~YyCa~~~ 93 (111)
T d1bd2d1 72 LSLHIVPSQPGDSAVYFCAAME 93 (111)
T ss_dssp EEEEESSCCGGGCEEEEEEEES
T ss_pred EEEEECCCcccccEEEEeeccC
Confidence 4899999999999999998764
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=88.57 E-value=0.14 Score=38.90 Aligned_cols=27 Identities=33% Similarity=0.617 Sum_probs=22.3
Q ss_pred cCCeEEEcCCCCCCCEEEEEEEEeCCc
Q psy10160 12 NKNMLTIKRVEPERLGAYTCQAYNGLG 38 (558)
Q Consensus 12 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g 38 (558)
++..|.|.+++++|+|.|.|.+.+..+
T Consensus 71 ~~~~L~I~~l~~~Dsa~YyCa~~~~~~ 97 (112)
T d1lgva1 71 NSASLTISGLQAEDEADYYCSSYDGSS 97 (112)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECSSS
T ss_pred CEeeEEeCcCccccCEEEEEeeecCCC
Confidence 345899999999999999998875443
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=88.49 E-value=0.14 Score=39.03 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.3
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
.+|.|.+++++|+|.|.|.+...
T Consensus 73 ~~L~I~~~~~~Dsa~YyCa~~~~ 95 (115)
T d1fo0a_ 73 IGLIITATQIEDSAVYFCAMRGD 95 (115)
T ss_dssp EEEEECSCCGGGCEEEEEEEECC
T ss_pred EEEEECCCCccccccccceeecC
Confidence 46999999999999999988653
|
| >d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=88.45 E-value=0.13 Score=39.05 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.9
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
.+|.|.+++++|+|.|.|.+..
T Consensus 73 ~~L~I~~~~~~Dsa~YyCa~~~ 94 (112)
T d1kgce1 73 STLKIQRTQQEDSAVYLCASSL 94 (112)
T ss_dssp EEEEESSCCGGGCEEEEEEEES
T ss_pred EEEEECCCCcCCCEEEEEeeeC
Confidence 4799999999999999998864
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=88.45 E-value=0.11 Score=39.09 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=20.0
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEe
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
..+|.|.+++++|+|.|.|.+..
T Consensus 70 ~~~L~I~~~~~~Dsa~YyCa~~~ 92 (107)
T d3cx5k1 70 DYSLTISNLEPEDIATYFCQHHI 92 (107)
T ss_dssp EEEEECSCCCSCCCSEEEEEECS
T ss_pred EEEEEEeEeeecCCCcEEeeeCC
Confidence 35899999999999999997653
|
| >d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.30 E-value=0.19 Score=36.83 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.8
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
...+.|.+|+.+|+|.|+|.....
T Consensus 56 ~a~F~i~~v~~~~~G~Y~C~y~~~ 79 (96)
T d1ugna1 56 KGQFPIPSITWEHTGRYRCYYGSD 79 (96)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEET
T ss_pred EEEEEEEecCHHHCCeEEEEEeCC
Confidence 358999999999999999987653
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=88.26 E-value=0.17 Score=38.39 Aligned_cols=22 Identities=45% Similarity=0.623 Sum_probs=19.5
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
.+|.|.+++.+|+|.|.|...+
T Consensus 77 ~~L~I~~~~~~DsavYyCa~~~ 98 (113)
T d1n4xl_ 77 FTLKISRVEAEDLGIYYCFQGS 98 (113)
T ss_dssp EEEEESSCCGGGCEEEEEEECS
T ss_pred ccCccCCCCcccCEEEEEEECC
Confidence 4899999999999999996554
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=88.21 E-value=0.17 Score=38.05 Aligned_cols=22 Identities=36% Similarity=0.804 Sum_probs=19.8
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
..|.|.+++++|+|.|.|.+..
T Consensus 73 ~~L~I~~l~~~Dsa~YyCA~~~ 94 (109)
T d1bwwa_ 73 YTFTISSLQPEDIATYYCQQYQ 94 (109)
T ss_dssp EEEEESSCCGGGCEEEEEEECS
T ss_pred eEEEEeeceeCcCceEEEeecC
Confidence 4799999999999999998764
|
| >d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=87.99 E-value=0.33 Score=36.35 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=21.0
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGL 37 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~ 37 (558)
..|.|.+++++|+|.|.|.+....
T Consensus 69 ~~L~I~~l~~~Dsa~YyCA~~~~~ 92 (108)
T d1nfde1 69 ATLTISGAQPEDEAAYYCLSSYGD 92 (108)
T ss_dssp EEEEETTCCGGGCSEEEEEEEETT
T ss_pred eeeeEcCccccCCceEEEEeecCC
Confidence 489999999999999999887543
|
| >d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
Probab=87.99 E-value=0.22 Score=37.72 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.6
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
.+|.|.+++++|+|.|.|-+.+
T Consensus 77 ~~L~I~~l~~~Dsa~YyCA~~~ 98 (113)
T d1q9ra1 77 FTLTITSVQAEDLAVYYCKQSY 98 (113)
T ss_dssp EEEEESSCCGGGCEEEEEEECS
T ss_pred EeEEecccccCCCeEEEecccC
Confidence 4799999999999999998653
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=87.92 E-value=0.38 Score=36.09 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=21.1
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGL 37 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~ 37 (558)
.+|.|.+++++|+|.|.|.+....
T Consensus 70 ~~L~I~~l~~~DsavYyCA~~~~~ 93 (109)
T d1w72l1 70 ATLTISRVEAGDEADYYCQVWDSR 93 (109)
T ss_dssp EEEEESSCCGGGCEEEEEEEEETT
T ss_pred cceEEeeeccCCCEEEEEEecCCC
Confidence 489999999999999999887643
|
| >d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=87.72 E-value=0.22 Score=37.78 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.2
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
.+|.|.+++.+|+|.|.|.+...
T Consensus 72 ~~L~I~~~~~~DSa~YyCa~~~~ 94 (114)
T d1ogae1 72 FPLTVTSAQKNPTAFYLCASSSR 94 (114)
T ss_dssp CCEEECSCCSCCCEEEEEEEESS
T ss_pred EEEEECcCCcCCceeEEEeeccC
Confidence 47999999999999999977643
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=87.58 E-value=0.14 Score=38.58 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.2
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEe
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
...|.|.+++++|+|.|.|.+..
T Consensus 70 ~~~L~I~~~~~~DSa~YyCA~~~ 92 (109)
T d1mqkl_ 70 QFSLKINSLLPEDFGSYYCQHHY 92 (109)
T ss_dssp EEEEEESSCCGGGCEEEEEEECS
T ss_pred EEEEEEccccccCCeeEEEeeeC
Confidence 34799999999999999998764
|
| >d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=87.43 E-value=0.15 Score=38.09 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=19.0
Q ss_pred CeEEEcCCCCCCCEEEEEEEE
Q psy10160 14 NMLTIKRVEPERLGAYTCQAY 34 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~ 34 (558)
.+|.|.+++.+|+|.|.|...
T Consensus 69 ~~L~I~~~~~~Dsa~YyCa~~ 89 (104)
T d1yqvl1 69 YSLTISSMETEDAATYYCQQW 89 (104)
T ss_dssp EEEEESSCCGGGCEEEEEEEC
T ss_pred EEEEecccCcccCCeEEEEec
Confidence 479999999999999999764
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=87.26 E-value=0.19 Score=37.82 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=20.4
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEe
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
+..|.|.+++.+|+|.|.|.+..
T Consensus 73 ~~~L~I~~~~~~Dsa~YyCa~~~ 95 (110)
T d2aq2a1 73 QFSLILESATPSQTSVYFCASGG 95 (110)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEE
T ss_pred EEEEEECCCCHhhCEEEEEeeCC
Confidence 35799999999999999998775
|
| >d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD28 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.25 E-value=0.14 Score=39.30 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=19.9
Q ss_pred eEEEcCCCCCCCEEEEEEEEeC
Q psy10160 15 MLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
+|.|.+++.+|+|.|.|.+...
T Consensus 78 ~L~I~~l~~~DsavYyCa~~~~ 99 (118)
T d1yjdc1 78 TFYLQNLYVNQTDIYFCKIEVM 99 (118)
T ss_dssp EEEEESCCGGGCEEEEEEEEEE
T ss_pred EEEECCCCcccCeEEEEEEecc
Confidence 7999999999999999987653
|
| >d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=86.95 E-value=0.23 Score=37.35 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.0
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGL 37 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~ 37 (558)
..|.|.+++++|+|.|.|.+....
T Consensus 72 ~~L~i~~~~~~Dsa~YyCA~~~~~ 95 (110)
T d1ac6a_ 72 FHLQKASVQESDSAVYYCALSGGN 95 (110)
T ss_dssp CCEEEEEECGGGCEEEEEEEEETT
T ss_pred EeeeecCcCcCCCcccceeecCCC
Confidence 579999999999999999887543
|
| >d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.44 E-value=0.19 Score=38.33 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=20.1
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
.+|.|.+++.+|+|.|.|.+..
T Consensus 75 ~~L~I~~l~~~Dsa~YyCa~~~ 96 (117)
T d1dqta_ 75 VNLTIQGLRAVDTGLYLCKVEL 96 (117)
T ss_dssp EEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEhhcCccccCEeEEEEEec
Confidence 5899999999999999998864
|
| >d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=86.43 E-value=0.21 Score=37.78 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=20.0
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
.+|.|.+++++|+|.|.|.+..
T Consensus 72 ~~L~I~~~~~~Dsa~YyCA~~~ 93 (113)
T d2ntsp1 72 SEMNVSTLELGDSALYLCASSL 93 (113)
T ss_dssp EEEEECSCCGGGCEEEEEEEES
T ss_pred eEEEECCCCcccceeeeeeeeC
Confidence 4799999999999999998764
|
| >d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=86.39 E-value=0.37 Score=36.24 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=20.4
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
..|.|.+++.+|+|.|.|...+.
T Consensus 74 ~~L~i~~l~~~Dsa~YyCA~~~~ 96 (111)
T d1cd0a_ 74 ASLTISGLKTEDEADYYCQSYDA 96 (111)
T ss_dssp EEEEECSCCGGGCEEEEEEEEET
T ss_pred cccccccCCcccCcEEEEeeccC
Confidence 38999999999999999987654
|
| >d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=86.05 E-value=0.22 Score=37.65 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=21.3
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCC
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGL 37 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~ 37 (558)
...|.|.+++++|+|.|.|.+....
T Consensus 70 ~~~L~i~~~~~~Dsa~YyCA~~~~~ 94 (112)
T d2cdeb1 70 HFPLTLESARPSHTSQYLCASSENI 94 (112)
T ss_dssp BCCEEBSSCCTTTCSEEEEEEECSS
T ss_pred ceEeeeccccccccccEEEEEecCC
Confidence 3579999999999999999887543
|
| >d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=85.92 E-value=0.24 Score=37.54 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.6
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGL 37 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~ 37 (558)
.+|.|.+++.+|+|.|.|.+....
T Consensus 74 ~~L~I~~~~~~Dsa~YyCa~~~~~ 97 (113)
T d1nfdb1 74 SEMNMSALELEDSAMYFCASSLRW 97 (113)
T ss_dssp EEEECCSCCGGGCEEECEEEESSS
T ss_pred EEEEecccCcCCceeEEEEeecCC
Confidence 479999999999999999876433
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=85.24 E-value=0.27 Score=37.55 Aligned_cols=23 Identities=39% Similarity=0.748 Sum_probs=20.3
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
..|.|.+++++|+|.|.|.+...
T Consensus 77 ~~L~i~~~~~~Dsa~YyCa~~~~ 99 (118)
T d2ij0c1 77 STLTVTSAHPEDSGFYVCSALAG 99 (118)
T ss_dssp EEEEECSCCGGGCEEEEEEEECS
T ss_pred ccccccccccccCceEEEEEecC
Confidence 36999999999999999998653
|
| >d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=85.22 E-value=0.27 Score=37.12 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=20.0
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
..|.|.+++.+|+|.|.|.+..
T Consensus 73 ~~L~i~~~~~~Dsa~YyCa~~~ 94 (113)
T d1j8he1 73 FSLILESASTNQTSMYLCASSS 94 (113)
T ss_dssp CEEEESSCCGGGCEEEEEEEEC
T ss_pred eeeEeccCccCCcccEEeeEcc
Confidence 4799999999999999998864
|
| >d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.18 E-value=0.26 Score=37.61 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.1
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
.+|.|.+++.+|+|.|.|.+..
T Consensus 75 ~~L~I~~l~~~Dsa~YyCa~~~ 96 (118)
T d1i8lc_ 75 VNLTIQGLRAMDTGLYICKVEL 96 (118)
T ss_dssp EEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEeeccccCCCEEEEEeEec
Confidence 4899999999999999998865
|
| >d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=85.03 E-value=0.37 Score=37.06 Aligned_cols=21 Identities=33% Similarity=0.691 Sum_probs=19.1
Q ss_pred eEEEcCCCCCCCEEEEEEEEe
Q psy10160 15 MLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n 35 (558)
.|.|.+++++|+|.|.|-...
T Consensus 81 ~L~i~~l~~~Dsa~YyCA~~~ 101 (123)
T d1hxmb1 81 TLTIHNVEKQDIATYYCALWE 101 (123)
T ss_dssp EEEECSCCGGGCEEEEEEEEE
T ss_pred eecccccccccCcEEEEeeeC
Confidence 699999999999999998754
|
| >d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 epsilon chain ectodomain fragment species: Sheep (Ovis aries) [TaxId: 9940]
Probab=84.95 E-value=0.6 Score=30.73 Aligned_cols=46 Identities=13% Similarity=0.343 Sum_probs=32.0
Q ss_pred CCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEE
Q psy10160 143 VGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCV 201 (558)
Q Consensus 143 ~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 201 (558)
.-+.|.|.|. -+|.|++++..+... .+.+|-+-+...+-.|.|.|.
T Consensus 7 ~edkV~L~Cn------~sI~w~k~~~~~~~~-------~~ktlnLG~~~~DPRGiY~C~ 52 (66)
T d1xmwa2 7 AEDKVILKCN------SSITLLQGTAGQEVS-------DNKTLNLGKRIEDPRGMYQCG 52 (66)
T ss_dssp ETTEEEEECS------SSCEEEEECCCCBSS-------SSSBBCCBCSTTCCEEEEECC
T ss_pred cCceEEEEcc------CeEEEccCccccccC-------CCcEEeCCCcccCCCcceECC
Confidence 3468999994 259999986544322 234566667777778999994
|
| >d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.93 E-value=0.16 Score=38.93 Aligned_cols=22 Identities=41% Similarity=0.795 Sum_probs=19.7
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
..|.|.+++++|+|.|.|...+
T Consensus 71 ~~L~I~~~~~~DsavYyCa~~~ 92 (119)
T d1f3rb2 71 YTLTISSLQPEDVATYFCYQYN 92 (119)
T ss_dssp EEEEECSCCGGGCSEEEEEEES
T ss_pred EEEEcccCccCCCeEEEeeccC
Confidence 4799999999999999997654
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=84.44 E-value=0.38 Score=36.27 Aligned_cols=21 Identities=43% Similarity=0.657 Sum_probs=18.5
Q ss_pred CeEEEcCCCCCCCEEEEEEEE
Q psy10160 14 NMLTIKRVEPERLGAYTCQAY 34 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~ 34 (558)
..|.|.+++.+|+|.|.|...
T Consensus 76 ~~L~Is~~~~~DsAvYyCa~~ 96 (112)
T d1mjul1 76 FTLRISRVEAEDVGVYYCLQH 96 (112)
T ss_dssp EEEEESSCCGGGCEEEEEEEC
T ss_pred EEEEECCccccCCceEEEEeC
Confidence 479999999999999999543
|
| >d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=84.22 E-value=0.3 Score=36.84 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.8
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
..|.|.+++++|+|.|.|.+..
T Consensus 72 ~~L~I~~~~~~DsavYyCA~~~ 93 (112)
T d2bnub1 72 FPLRLLSAAPSQTSVYFCASSY 93 (112)
T ss_dssp CCEEESSCCGGGCEEEEEEEEC
T ss_pred EEEEECCCCHHHCEEEEEeecC
Confidence 4799999999999999998764
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.82 E-value=0.26 Score=36.09 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=20.3
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
....|.+|+.+|+|.|+|.....
T Consensus 56 a~F~l~~v~~~~~G~Y~C~y~~~ 78 (96)
T d1ucta2 56 ANFSLGPVDLNVSGIYRCYGWYN 78 (96)
T ss_dssp EEEECCSCCGGGCEEEEEEEECT
T ss_pred cEEEEeccccccCcEEEEEEEcC
Confidence 57999999999999999988754
|
| >d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=82.26 E-value=0.3 Score=37.44 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=19.0
Q ss_pred eEEEcCCCCCCCEEEEEEEEe
Q psy10160 15 MLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 15 ~L~I~~v~~~D~G~Y~C~a~n 35 (558)
.|.|.+++.+|+|.|.|....
T Consensus 80 ~L~I~~l~~~Dsa~YyCA~~~ 100 (120)
T d1ypzf1 80 ILTIYSLEEEDEAIYYCSYGE 100 (120)
T ss_dssp EEEECSCCGGGCSEEEEEECC
T ss_pred cccccccccccceeEEEEEcC
Confidence 699999999999999997753
|
| >d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=82.06 E-value=0.44 Score=34.75 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.1
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNG 36 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~ 36 (558)
..+.|.+|+.+|+|.|+|.....
T Consensus 57 a~F~l~~v~~~~~G~Y~C~y~~~ 79 (96)
T d1nkra1 57 ANFSISRMTQDLAGTYRCYGSVT 79 (96)
T ss_dssp EEEEESSCCGGGCEEEEEEEEBT
T ss_pred EEEEEcccCcccCeEEEEEEEcC
Confidence 36999999999999999987653
|
| >d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Second domain of the Flt-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.99 E-value=1.1 Score=32.44 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=24.2
Q ss_pred CCeEEEcCCCCCCCEEEEEEEEeCCcceEEEE
Q psy10160 13 KNMLTIKRVEPERLGAYTCQAYNGLGRAVSWT 44 (558)
Q Consensus 13 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~ 44 (558)
..-++|.+++..|+|.|.|.|....-...|..
T Consensus 58 k~Gf~I~~~~~~~~g~y~C~a~~~g~~~~S~y 89 (95)
T d1fltx_ 58 RKGFIISNATYKEIGLLTCEATVNGHLYKTNY 89 (95)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred CCCEEEeCCCcccCeEEEEEEEECCEEEEEEE
Confidence 44699999999999999999986532223443
|
| >d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=81.76 E-value=0.32 Score=36.65 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.5
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
..|.|.+++.+|+|.|.|.+..
T Consensus 69 ~~L~i~~~~~~Dsa~YyCa~~~ 90 (112)
T d1kgcd1 69 STLILHRATLRDAAVYYCILPL 90 (112)
T ss_dssp EEEEESSCCGGGCEEEEEECCC
T ss_pred eEEEEeecccccceeEeeeEec
Confidence 4799999999999999998754
|
| >d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.31 E-value=0.027 Score=43.39 Aligned_cols=65 Identities=14% Similarity=0.234 Sum_probs=37.5
Q ss_pred eeCCCcEEEEeEeecc-CCC---eEEEEECCEEeccCCc-eEEEccC------CeEEEccCCCCCCeEEEEEEEeC
Q psy10160 141 FGVGSDISIPCDVDGY-PIP---QVFWYKDGQVIENDGV-HYRITES------NRLHINQANATDSGEYRCVASNS 205 (558)
Q Consensus 141 v~~G~~v~L~C~~~g~-P~p---~i~W~~~g~~l~~~~~-~~~~~~~------~sL~I~~v~~~D~G~Y~C~a~N~ 205 (558)
+..++.++|.|.+.|. |.. .+.|.+++..+..... ......+ +.|.|..-..+..-.|+|.+...
T Consensus 26 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~W~~g~~ytC~V~H~ 101 (116)
T d1igyb3 26 LLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSA 101 (116)
T ss_dssp HSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCS
T ss_pred cccCCCcEEEEEEecEeCCCCEEEEEECcCCeEcCCcEEcccEECCCCCEEEEEEEEECHHHhCCCCEEEEEEEeC
Confidence 4578999999999985 532 4678888765532110 0001112 23554433223355899998764
|
| >d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.01 E-value=0.74 Score=33.57 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=20.4
Q ss_pred CeEEEcCCCCCCCEEEEEEEEeCC
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYNGL 37 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n~~ 37 (558)
....|.+|+.+|+|.|+|......
T Consensus 60 a~F~l~~v~~~~~G~Y~C~y~~~~ 83 (98)
T d1ugna2 60 AIFSVGPVSPSRRWWYRCYAYDSN 83 (98)
T ss_dssp EEEEECCCCTTSCEEEEEEEECTT
T ss_pred EEEEeeecccCCCeEEEEeeEcCC
Confidence 369999999999999999876543
|
| >d2oz4a1 b.1.1.3 (A:283-366) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.38 E-value=4.6 Score=27.42 Aligned_cols=62 Identities=15% Similarity=0.323 Sum_probs=37.7
Q ss_pred ceEeeCCCcEEEEeEeeccCCCeEEEEECCEEeccCCceEEEccCCeEEEccCCCCCCeEEEEEEEeC-Ccee
Q psy10160 138 TQVFGVGSDISIPCDVDGYPIPQVFWYKDGQVIENDGVHYRITESNRLHINQANATDSGEYRCVASNS-YTSD 209 (558)
Q Consensus 138 ~~~v~~G~~v~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~-~G~~ 209 (558)
+..+.+|..|+.+|.+. |.+.+. .+|.+-...+.+ ..|.+..-..+|.-.++|.|.=. .|..
T Consensus 10 ep~v~eGt~VtVtC~a~--~~a~v~--L~G~p~~~Pg~~------aql~LnAseeDd~R~F~C~A~LeV~G~~ 72 (84)
T d2oz4a1 10 KPEVSEGTEVTVKCEAH--PRAKVT--LNGVPAQPLGPR------AQLLLKATPEDNGRSFSCSATLEVAGQL 72 (84)
T ss_dssp CSEEETTCEEEEEEECC--TTSEEE--ESSCSSSCCSSE------ECCEEECCGGGTTEEEEEEEEEECSSSE
T ss_pred cCcCCCCCEEEEEEecC--CCcEEE--EccCCCCCCCCc------eEEEEecCcccCCcEEEEEEEEEECcEE
Confidence 44578999999999987 444444 455433222211 23666544555666999998754 3443
|
| >d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.02 E-value=0.31 Score=35.34 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=19.2
Q ss_pred CeEEEcCCCCCCCEEEEEEEEe
Q psy10160 14 NMLTIKRVEPERLGAYTCQAYN 35 (558)
Q Consensus 14 ~~L~I~~v~~~D~G~Y~C~a~n 35 (558)
..+.|.+|+.+|+|.|+|....
T Consensus 54 a~F~i~~v~~~~~G~Y~C~~~~ 75 (93)
T d1olla2 54 AEFPLGPVTTAHRGTYRCFGSY 75 (93)
T ss_dssp EEEEEEECCGGGCEEEEEECEE
T ss_pred eEEEecccChhcCceEEEEeEC
Confidence 5799999999999999997543
|