Psyllid ID: psy10165

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
MSQIVQGWIWNLGKINIQWPGLSAPVIRGRELVQQTRLPPDPDREAKLIALRDKQFQGKYRKTPPLERGWSGGKLGGRSLGPPDPVGENTAKEIWAGVTGVSNAGKKRGRGRGPGKLTARDLNRGQIIGIDTFDGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEFSEENDNYPTIVASPSTCKKDSSKAPDFTEVSSWSYRPEIEERRKTG
cccccccEEEcccccccccccccccEEcccEEEEcccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEEccEEEEEccccEEEEEEEEEEEEcccccEEEEEEccccHHHHHHHHHHHHHcccEEEEcccccEEEEEEEEEEccEEEEEEEcccccEEEEccHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccEEEEcccccccccccccccccccccccccHHHHHHHcc
ccEEEEEEEEEccccccccccccHHHHHcccEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccccHccccccccccccccccccccccccHHHccccccccccHHccccccccccccccccccccccccccccHHHHHHEEEEHHHHHHEEccccEEEEEEEEEEEccccEEEcccccHHHHHHHHHHHHHHHHHHcEEEEccccccEcccEEEEEcccEEEEEccccccEEEccHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHcccccEEEEcHHHHcccccccccccccccccccHHHHHHcccc
MSQIVQGWIWNLGkiniqwpglsapvirgrelvqqtrlppdpdREAKLIALRDKQfqgkyrktpplergwsggklggrslgppdpvgentAKEIWAGVtgvsnagkkrgrgrgpgkltardlnrgqiigidtfdgfdTRILEYKAVFCMkknsgryrtVSTLVVTgngqglagfalgksvegRASMRNAKNRAGQKLIYVQRYKDHTVLHDFYTQFGKTKIfvekkpegtglICHRIIQEICKAVGikdirakvegstnpQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEfseendnyptivaspstckkdsskapdftevsswsyrpeiEERRKTG
MSQIVQGWIWNLGKINIQWPGLSAPVIRGRELVQqtrlppdpdrEAKLIAlrdkqfqgkyrktpplergwsggklggrslgppdPVGENTAKEIwagvtgvsnagkkrgrgrgpgkltardlnrgqiigidtfdgfdTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEFSEENDNYPTIVaspstckkdsskapdftevsswsyrpeieerrktg
MSQIVQGWIWNLGKINIQWPGLSAPVIRGRELVQQTRLPPDPDREAKLIALRDKQFQGKYRKTPPLERGWSGGKLGGRSLGPPDPVGENTAKEIWAGVTGVSNAgkkrgrgrgpgkLTARDLNRGQIIGIDTFDGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQQKShqqlaeeqqlhlVEFSEENDNYPTIVASPSTCKKDSSKAPDFTEVSSWSYRPEIEERRKTG
***IVQGWIWNLGKINIQWPGLSAPVIRGRELV************************************************************IWAG************************LNRGQIIGIDTFDGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSV************AGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ****************************************************************
*SQIVQGWIWNLGKINIQWPGLSAPVI***********************************************************************************************************GFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEFSEENDNYPTIV*****************EVSSWSYR***E******
MSQIVQGWIWNLGKINIQWPGLSAPVIRGRELVQQTRLPPDPDREAKLIALRDKQFQGKYRKTPPLERGWSGGKLGGRSLGPPDPVGENTAKEIWAGVTGVSNAGKKRGRGRGPGKLTARDLNRGQIIGIDTFDGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEFSEENDNYPTIVASP***************VSSWSYRPE********
*SQIVQGWIWNLGKINIQWPGLSAPVIRGRELVQQTRLPPDPDREAKLIALRDKQFQGKYRKT*********GKLGGRSLGPPDPVGENT*****************************************TFDGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEFSEENDNYPTIVASPSTCKK************SWSY****E******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSQIVQGWIWNLGKINIQWPGLSAPVIRGRELVQQTRLPPDPDREAKLIALRDKQFQGKYRKTPPLERGWSGGKLGGRSLGPPDPVGENTAKEIWAGVTGVSNAGKKRGRGRGPGKLTARDLNRGQIIGIDTFDGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEFSEENDNYPTIVASPSTCKKDSSKAPDFTEVSSWSYRPEIEERRKTG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query337 2.2.26 [Sep-21-2011]
Q2KID9430 28S ribosomal protein S5, yes N/A 0.765 0.6 0.397 9e-54
Q5REJ1429 28S ribosomal protein S5, yes N/A 0.765 0.601 0.387 4e-53
P82675430 28S ribosomal protein S5, yes N/A 0.765 0.6 0.377 4e-51
Q99N87432 28S ribosomal protein S5, yes N/A 0.765 0.597 0.374 4e-49
Q93425418 Putative 28S ribosomal pr yes N/A 0.735 0.593 0.370 2e-40
A8Y3Q1415 Putative 28S ribosomal pr N/A N/A 0.738 0.6 0.358 2e-39
B8G6Q8179 30S ribosomal protein S5 yes N/A 0.462 0.871 0.345 5e-17
Q10234387 Probable 37S ribosomal pr yes N/A 0.418 0.364 0.326 1e-16
B5ZB57203 30S ribosomal protein S5 yes N/A 0.471 0.783 0.312 2e-16
B9LJE9178 30S ribosomal protein S5 yes N/A 0.462 0.876 0.335 4e-16
>sp|Q2KID9|RT05_BOVIN 28S ribosomal protein S5, mitochondrial OS=Bos taurus GN=MRPS5 PE=1 SV=1 Back     alignment and function desciption
 Score =  211 bits (536), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 120/302 (39%), Positives = 164/302 (54%), Gaps = 44/302 (14%)

Query: 6   QGWIWNLGKINIQWPGLSAPVIRGREL--VQQTRLPPDPDREAKLIALRDKQFQGKYRKT 63
           +G I   G+    WPGL+AP+++   +  + Q         EA ++  R+ ++  K +  
Sbjct: 128 RGQIIGEGRRGFLWPGLNAPLMKSGAIQTITQRSKEEQEKVEADMVQQRE-EWDRKRKMK 186

Query: 64  PPLERGWSGGKLGGRSLGPPDPVGENTAKEIWAGVTGVSNAGKKRGRGRGPGKLTARDLN 123
              ERGWSG   GG SLGPPDP                           GP         
Sbjct: 187 VKRERGWSGNSWGGISLGPPDP---------------------------GPNG------- 212

Query: 124 RGQIIGIDTFDGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGR 183
                  +T+D FDTRILE + VF M    GR R+V  LV  GNG+G AGFA+GK+ E  
Sbjct: 213 -------ETYDDFDTRILEVRNVFNMTAKEGRKRSVRVLVAVGNGRGAAGFAIGKATERA 265

Query: 184 ASMRNAKNRAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICK 243
            + R AKNRA   L Y++RY+DHT+ HD    F +T I ++K+P G GL CHR I  IC+
Sbjct: 266 DAFRKAKNRAVHYLHYIERYEDHTIYHDISLTFKRTHIKMKKQPRGYGLRCHRAITTICR 325

Query: 244 AVGIKDIRAKVEGSTNPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEFSEENDNYPTIVA 303
            +GIKD+ AKV GS N  ++ +  F GL +Q++HQQLA+++ LH+VEF EE    P +VA
Sbjct: 326 LIGIKDMYAKVSGSVNMLSLTRGLFQGLSRQETHQQLADKKSLHVVEFREECGPLPIVVA 385

Query: 304 SP 305
           SP
Sbjct: 386 SP 387

Bos taurus (taxid: 9913)
>sp|Q5REJ1|RT05_PONAB 28S ribosomal protein S5, mitochondrial OS=Pongo abelii GN=MRPS5 PE=2 SV=1 Back     alignment and function description
>sp|P82675|RT05_HUMAN 28S ribosomal protein S5, mitochondrial OS=Homo sapiens GN=MRPS5 PE=1 SV=2 Back     alignment and function description
>sp|Q99N87|RT05_MOUSE 28S ribosomal protein S5, mitochondrial OS=Mus musculus GN=Mrps5 PE=2 SV=1 Back     alignment and function description
>sp|Q93425|RT05_CAEEL Putative 28S ribosomal protein S5, mitochondrial OS=Caenorhabditis elegans GN=mrps-5 PE=3 SV=2 Back     alignment and function description
>sp|A8Y3Q1|RT05_CAEBR Putative 28S ribosomal protein S5, mitochondrial OS=Caenorhabditis briggsae GN=mrps-5 PE=3 SV=3 Back     alignment and function description
>sp|B8G6Q8|RS5_CHLAD 30S ribosomal protein S5 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rpsE PE=3 SV=1 Back     alignment and function description
>sp|Q10234|RT05_SCHPO Probable 37S ribosomal protein S5, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrps5 PE=1 SV=1 Back     alignment and function description
>sp|B5ZB57|RS5_UREU1 30S ribosomal protein S5 OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=rpsE PE=3 SV=1 Back     alignment and function description
>sp|B9LJE9|RS5_CHLSY 30S ribosomal protein S5 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rpsE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
328700367 454 PREDICTED: 28S ribosomal protein S5, mit 0.810 0.601 0.525 7e-94
307204789412 28S ribosomal protein S5, mitochondrial 0.780 0.638 0.534 5e-87
158291452 458 AGAP004091-PA [Anopheles gambiae str. PE 0.810 0.596 0.520 3e-86
157138201 459 28S ribosomal protein S5 [Aedes aegypti] 0.810 0.594 0.510 4e-86
332375815 442 unknown [Dendroctonus ponderosae] 0.801 0.610 0.516 4e-86
114052779426 mitochondrial ribosomal protein S5 [Bomb 0.777 0.615 0.516 7e-86
189239344 442 PREDICTED: similar to 28S ribosomal prot 0.816 0.622 0.495 2e-85
170058890 444 mitochondrial 28S ribosomal protein S5 [ 0.854 0.648 0.480 2e-84
307168678411 28S ribosomal protein S5, mitochondrial 0.810 0.664 0.501 2e-84
321474597409 hypothetical protein DAPPUDRAFT_98818 [D 0.777 0.640 0.504 8e-81
>gi|328700367|ref|XP_001950156.2| PREDICTED: 28S ribosomal protein S5, mitochondrial-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  350 bits (897), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 166/316 (52%), Positives = 216/316 (68%), Gaps = 43/316 (13%)

Query: 6   QGWIWNLGKINIQWPGLSAPVIRGRELVQQTRLPPDPDREAKLIALRDKQFQGKYRKTPP 65
           +G +  +G  N+ WPGL+AP+I+GR+L+++T+LPPDP+R+A+L+ LRD     K  +  P
Sbjct: 101 RGQVIGVGVDNMIWPGLNAPIIKGRDLIKRTKLPPDPERQARLVKLRDSMGTFKMLRLLP 160

Query: 66  LERGWSGGKLGGRSLGPPDPVGENTAKEIWAGVTGVSNAGKKRGRGRGPGKLTARDLNRG 125
            ERGWSG K+ GRS+GPPDP+ E                                     
Sbjct: 161 TERGWSGSKMPGRSIGPPDPINEYN----------------------------------- 185

Query: 126 QIIGIDTFDGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRAS 185
                  FDGFDT++LE+K VFCMK N+GRYR +S + VTGN  GLAGFALGK+ + RA+
Sbjct: 186 -------FDGFDTKVLEFKTVFCMKANAGRYRRISVVTVTGNKNGLAGFALGKAADSRAA 238

Query: 186 MRNAKNRAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAV 245
           +R AKNRAGQKL+Y++RY +HTV HDF+TQF  T+IFVEK+PEG GLICHR I+ IC+ +
Sbjct: 239 LRRAKNRAGQKLMYIERYNNHTVYHDFFTQFCNTRIFVEKRPEGHGLICHRAIKTICEMI 298

Query: 246 GIKDIRAKVEGSTNPQAIVKAFFLGLMQQKSHQQLAEEQQLHLVEFSEENDNYPTIVASP 305
           GIKD+ AKVEGSTN Q +VKAFFLGL++QK+HQQLA+E   HLVEF +END  P IVASP
Sbjct: 299 GIKDLYAKVEGSTNLQNVVKAFFLGLLKQKTHQQLADETNYHLVEFRKENDYLPVIVASP 358

Query: 306 S-TCKKDSSKAPDFTE 320
               + D  +APDF +
Sbjct: 359 KGPVQTDPKEAPDFLQ 374

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307204789|gb|EFN83347.1| 28S ribosomal protein S5, mitochondrial [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|158291452|ref|XP_312962.4| AGAP004091-PA [Anopheles gambiae str. PEST] gi|157017554|gb|EAA08634.4| AGAP004091-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|157138201|ref|XP_001664173.1| 28S ribosomal protein S5 [Aedes aegypti] gi|108880658|gb|EAT44883.1| AAEL003801-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|332375815|gb|AEE63048.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|114052779|ref|NP_001040341.1| mitochondrial ribosomal protein S5 [Bombyx mori] gi|95102562|gb|ABF51219.1| mitochondrial ribosomal protein S5 isoform 1 [Bombyx mori] Back     alignment and taxonomy information
>gi|189239344|ref|XP_973859.2| PREDICTED: similar to 28S ribosomal protein S5 [Tribolium castaneum] gi|270010452|gb|EFA06900.1| hypothetical protein TcasGA2_TC009847 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|170058890|ref|XP_001865121.1| mitochondrial 28S ribosomal protein S5 [Culex quinquefasciatus] gi|167877816|gb|EDS41199.1| mitochondrial 28S ribosomal protein S5 [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|307168678|gb|EFN61714.1| 28S ribosomal protein S5, mitochondrial [Camponotus floridanus] Back     alignment and taxonomy information
>gi|321474597|gb|EFX85562.1| hypothetical protein DAPPUDRAFT_98818 [Daphnia pulex] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
FB|FBgn0044510407 mRpS5 "mitochondrial ribosomal 0.560 0.464 0.492 5.4e-65
UNIPROTKB|F1SU66430 MRPS5 "Uncharacterized protein 0.560 0.439 0.455 2.6e-51
UNIPROTKB|Q2KID9430 MRPS5 "28S ribosomal protein S 0.575 0.451 0.433 1.1e-50
UNIPROTKB|E2RB92430 MRPS5 "Uncharacterized protein 0.575 0.451 0.423 1.4e-48
UNIPROTKB|P82675430 MRPS5 "28S ribosomal protein S 0.575 0.451 0.408 2.9e-48
UNIPROTKB|F1NYZ1337 MRPS5 "Uncharacterized protein 0.605 0.605 0.404 4.2e-47
MGI|MGI:1924971432 Mrps5 "mitochondrial ribosomal 0.575 0.449 0.408 8.6e-47
RGD|1308318432 Mrps5 "mitochondrial ribosomal 0.575 0.449 0.413 1.1e-46
ZFIN|ZDB-GENE-060929-264397 mrps5 "mitochondrial ribosomal 0.554 0.471 0.401 1.4e-46
WB|WBGene00008452418 mrps-5 [Caenorhabditis elegans 0.522 0.421 0.416 7.3e-38
FB|FBgn0044510 mRpS5 "mitochondrial ribosomal protein S5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 467 (169.5 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
 Identities = 93/189 (49%), Positives = 119/189 (62%)

Query:   117 LTARDLNRGQIIGIDTFDGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFAL 176
             +  R +     +G + F  FDTR+LE K VF MK N GR R  S L VTGNG GLAGFA 
Sbjct:   152 MPGRSIGPPDPVGDEEFVSFDTRVLENKIVFIMKGNMGRKRRYSVLSVTGNGNGLAGFAT 211

Query:   177 GKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHR 236
              K+ E R ++R +KNRAGQKLI +   ++ T+ HDF T FGKTKIF  +KP+G GL+CHR
Sbjct:   212 AKAPEVRTALRKSKNRAGQKLINISLCENRTIFHDFRTDFGKTKIFCFQKPDGYGLVCHR 271

Query:   237 IIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQQKSXXXXXXXXXXXXVEFSEEND 296
              IQ ICK +GIKD+ AK+EGSTN Q I KAFF+GLM Q+S            V+  +  +
Sbjct:   272 AIQTICKVIGIKDLYAKIEGSTNIQNIAKAFFIGLMTQRSYQYIANETNSNIVQLQKTRN 331

Query:   297 NYPTIVASP 305
              +  +   P
Sbjct:   332 RFIDVKGMP 340
GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS
GO:0003735 "structural constituent of ribosome" evidence=ISS
GO:0006412 "translation" evidence=ISS
GO:0003723 "RNA binding" evidence=IEA
UNIPROTKB|F1SU66 MRPS5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KID9 MRPS5 "28S ribosomal protein S5, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RB92 MRPS5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P82675 MRPS5 "28S ribosomal protein S5, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NYZ1 MRPS5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1924971 Mrps5 "mitochondrial ribosomal protein S5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1308318 Mrps5 "mitochondrial ribosomal protein S5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-264 mrps5 "mitochondrial ribosomal protein S5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00008452 mrps-5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5REJ1RT05_PONABNo assigned EC number0.38740.76550.6013yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
COG0098181 COG0098, RpsE, Ribosomal protein S5 [Translation, 3e-26
PRK00550168 PRK00550, rpsE, 30S ribosomal protein S5; Validate 3e-21
TIGR01021154 TIGR01021, rpsE_bact, ribosomal protein S5, bacter 8e-20
pfam0371974 pfam03719, Ribosomal_S5_C, Ribosomal protein S5, C 5e-17
PRK04044211 PRK04044, rps5p, 30S ribosomal protein S5P; Review 1e-06
CHL00138143 CHL00138, rps5, ribosomal protein S5; Validated 2e-06
TIGR01020212 TIGR01020, rpsE_arch, ribosomal protein S5(archaea 5e-06
>gnl|CDD|223176 COG0098, RpsE, Ribosomal protein S5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  102 bits (257), Expect = 3e-26
 Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 1/169 (0%)

Query: 115 GKLTARDLNRGQIIGIDTFDGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGF 174
           GK+   +   G  I     D    ++++   V  + K  GR    S LVV G+  G  GF
Sbjct: 3   GKIATIEFKSGLPIKEPEVDELLEKVVDINRVSKVVK-GGRRFRFSALVVVGDRNGRVGF 61

Query: 175 ALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLIC 234
            +GK+ E   ++R A   A + +I V R   HT+ H+   + G  K+ ++  PEGTG+I 
Sbjct: 62  GIGKAKEVPEAIRKAIEDAKKNIIEVPRGNGHTIPHEVIGKHGAVKVLLKPAPEGTGIIA 121

Query: 235 HRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQQKSHQQLAEE 283
              ++ + +  GIKD+ AK  GS NP  +V+A F  L + ++ + +A +
Sbjct: 122 GGAVRAVLELAGIKDVLAKSLGSRNPINVVRATFDALKKLRTPEDVAAK 170

Length = 181
>gnl|CDD|234790 PRK00550, rpsE, 30S ribosomal protein S5; Validated Back     alignment and domain information
>gnl|CDD|130093 TIGR01021, rpsE_bact, ribosomal protein S5, bacterial/organelle type Back     alignment and domain information
>gnl|CDD|190724 pfam03719, Ribosomal_S5_C, Ribosomal protein S5, C-terminal domain Back     alignment and domain information
>gnl|CDD|235213 PRK04044, rps5p, 30S ribosomal protein S5P; Reviewed Back     alignment and domain information
>gnl|CDD|177060 CHL00138, rps5, ribosomal protein S5; Validated Back     alignment and domain information
>gnl|CDD|233235 TIGR01020, rpsE_arch, ribosomal protein S5(archaeal type)/S2(eukaryote cytosolic type) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 337
PRK04044211 rps5p 30S ribosomal protein S5P; Reviewed 100.0
PTZ00070257 40S ribosomal protein S2; Provisional 100.0
TIGR01020212 rpsE_arch ribosomal protein S5(archaeal type)/S2(e 100.0
PRK00550168 rpsE 30S ribosomal protein S5; Validated 100.0
TIGR01021154 rpsE_bact ribosomal protein S5, bacterial/organell 100.0
COG0098181 RpsE Ribosomal protein S5 [Translation, ribosomal 100.0
KOG2646|consensus396 100.0
CHL00138143 rps5 ribosomal protein S5; Validated 100.0
KOG0877|consensus213 100.0
PF0371974 Ribosomal_S5_C: Ribosomal protein S5, C-terminal d 99.94
PF0033367 Ribosomal_S5: Ribosomal protein S5, N-terminal dom 99.88
>PRK04044 rps5p 30S ribosomal protein S5P; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=4.4e-55  Score=401.41  Aligned_cols=193  Identities=23%  Similarity=0.379  Sum_probs=181.9

Q ss_pred             CCCCCCCCCCCccCCCCCCCCCChhhhhhhccccccccccccCCCCCCCcccccccCcccccccccCCCcceEEEEEeee
Q psy10165         67 ERGWSGGKLGGRSLGPPDPVGENTAKEIWAGVTGVSNAGKKRGRGRGPGKLTARDLNRGQIIGIDTFDGFDTRILEYKAV  146 (337)
Q Consensus        67 e~gW~g~~~~grsvgpp~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~~~~~~~~l~~~eiId~~~~~~f~~~VL~v~rV  146 (337)
                      ++.|.|.++.||.|..- .+.  |.||||+                     +..+|+|.||||++ +++|+++||+++||
T Consensus         6 ~~~w~p~t~lg~lv~~~-~i~--s~e~i~~---------------------~~~~i~e~eivd~l-l~~l~e~vv~i~rV   60 (211)
T PRK04044          6 IEEWEPKTRLGRLVKEG-KIT--SIDEIFD---------------------SGLPIKEPEIVDVL-LPDLEDEVLDINMV   60 (211)
T ss_pred             ccCccccchhhhhhhcC-Ccc--cHHHHHh---------------------cCCCcccchhhhhh-hccceeEEEEEEeE
Confidence            45699999999999977 554  8999999                     78899999999965 57999999999999


Q ss_pred             eeeecCCCceEEEEEEEEEeCCCCceeeecccchhHHHHHHHHHHHHccCcEEEecc---------CCcceeEeEEEEEc
Q psy10165        147 FCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRY---------KDHTVLHDFYTQFG  217 (337)
Q Consensus       147 ~kmT~~~GR~~rf~alVvVGNgnG~vG~G~GKa~ev~~AirkA~~~Ak~nli~V~r~---------~~~TIph~v~gk~g  217 (337)
                      +|||+ +||++||+|||||||+||++|||+|||+|+.+||++|+.+|++||++|+++         ++|||||++.|||+
T Consensus        61 ~kvtk-gGr~~sf~alVvVGn~~G~vG~G~GKa~ev~~Ai~kA~~~Akknli~V~r~~g~We~~~~~~~TI~h~v~gk~g  139 (211)
T PRK04044         61 QRMTD-SGRRVRFRVVVVVGNRDGYVGVGQGKAKQVGPAIRKAIRNAKLNIIKVRRGCGSWECGCGEPHSVPFKVTGKAG  139 (211)
T ss_pred             Eeeec-CCcEEEEEEEEEEeCCCCeEeeeeeeccchHHHHHHHHHHHHhCeEEEEcccccccccCCCCCcCCeEEEEEEc
Confidence            99999 999999999999999999999999999999999999999999999999996         78999999999999


Q ss_pred             eEEEEEEeCCCccceeechHHHHHHHHcCCCcceeeecCCC-ChhhHHHHHHHHHhc---CCCHHHHHHHhC
Q psy10165        218 KTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGST-NPQAIVKAFFLGLMQ---QKSHQQLAEEQQ  285 (337)
Q Consensus       218 stkV~l~PaP~G~Glva~~~ir~Il~laGIkDv~aKv~Gst-n~~NvvkAtf~AL~~---~~t~~~iA~~rG  285 (337)
                      +++|+|+|||+|+||+|++.+++||++|||+||++|++||+ |++|++||||+||.+   +.+|++.++.+|
T Consensus       140 s~~V~l~Pap~GtGiiag~~vr~vlelaGIkDv~aK~~Gstrn~~N~vkAt~~AL~~~~~~~~p~~~~~~~~  211 (211)
T PRK04044        140 SVEVTLKPAPRGLGLVAGDVAKKVLELAGIKDVWTRTFGETRTTVNFAKATFNALKNTYKVRTPPDWAEKRG  211 (211)
T ss_pred             cEEEEEEECCCCCeEEECcHHHHHHHHcCcceEEEEccCCCCChhHHHHHHHHHHHHHHcccCHHHHHhhcC
Confidence            99999999999999999999999999999999999999997 999999999999995   668888887654

>PTZ00070 40S ribosomal protein S2; Provisional Back     alignment and domain information
>TIGR01020 rpsE_arch ribosomal protein S5(archaeal type)/S2(eukaryote cytosolic type) Back     alignment and domain information
>PRK00550 rpsE 30S ribosomal protein S5; Validated Back     alignment and domain information
>TIGR01021 rpsE_bact ribosomal protein S5, bacterial/organelle type Back     alignment and domain information
>COG0098 RpsE Ribosomal protein S5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2646|consensus Back     alignment and domain information
>CHL00138 rps5 ribosomal protein S5; Validated Back     alignment and domain information
>KOG0877|consensus Back     alignment and domain information
>PF03719 Ribosomal_S5_C: Ribosomal protein S5, C-terminal domain; InterPro: IPR005324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF00333 Ribosomal_S5: Ribosomal protein S5, N-terminal domain; InterPro: IPR013810 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
2gy9_E148 Structure Of The 30s Subunit Of A Pre-Translocation 1e-10
3fih_E150 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 1e-10
1p6g_E166 Real Space Refined Coordinates Of The 30s Subunit F 2e-10
1qd7_D145 Partial Model For 30s Ribosomal Subunit Length = 14 2e-10
3e1a_S159 Structure Of The 30s Subunit And The Trnas Of E. Co 2e-10
1pkp_A150 The Structure Of Ribosomal Protein S5 Reveals Sites 2e-10
1vs5_E167 Crystal Structure Of The Bacterial Ribosome From Es 2e-10
1eg0_B148 Fitting Of Components With Known Structure Into An 2e-10
1fka_E162 Structure Of Functionally Activated Small Ribosomal 3e-09
1i94_E161 Crystal Structures Of The Small Ribosomal Subunit W 3e-09
3ohc_E160 Structure Of The Thermus Thermophilus Ribosome Comp 4e-09
3fic_E151 T. Thermophilus 70s Ribosome In Complex With Mrna, 4e-09
1pns_E150 Crystal Structure Of A Streptomycin Dependent Ribos 5e-09
>pdb|2GY9|E Chain E, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 148 Back     alignment and structure 
Iteration: 1

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
Query: 154 GRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRNAKNRAGQKLIYVQRYKDHTVLHDFY 213
           GR  + + L V G+G G  GF  GK+ E  A+++ A  +A + +I V    + T+ H   
Sbjct: 19  GRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVA-LNNGTLQHPVK 77
Query: 214 TQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQ 273
                +++F++   EGTG+I    ++ + +  G+ ++ AK  GSTNP  +V+A   GL  
Sbjct: 78  GVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLEN 137
Query: 274 QKS 276
             S
Sbjct: 138 MNS 140
>pdb|3FIH|E Chain E, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 150 Back     alignment and structure
>pdb|1P6G|E Chain E, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 166 Back     alignment and structure
>pdb|1QD7|D Chain D, Partial Model For 30s Ribosomal Subunit Length = 145 Back     alignment and structure
>pdb|3E1A|S Chain S, Structure Of The 30s Subunit And The Trnas Of E. Coli Ribosome In Pre- Accommodation State Length = 159 Back     alignment and structure
>pdb|1PKP|A Chain A, The Structure Of Ribosomal Protein S5 Reveals Sites Of Interaction With 16s Rrna Length = 150 Back     alignment and structure
>pdb|1VS5|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 167 Back     alignment and structure
>pdb|1FKA|E Chain E, Structure Of Functionally Activated Small Ribosomal Subunit At 3.3 A Resolution Length = 162 Back     alignment and structure
>pdb|1I94|E Chain E, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 161 Back     alignment and structure
>pdb|3OHC|E Chain E, Structure Of The Thermus Thermophilus Ribosome Complexed With Erythromycin. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. Length = 160 Back     alignment and structure
>pdb|3FIC|E Chain E, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 151 Back     alignment and structure
>pdb|1PNS|E Chain E, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 150 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
3r8n_E150 30S ribosomal protein S5; protein biosynthesis, RN 1e-23
3i1m_E167 30S ribosomal protein S5; ribosome structure, prot 1e-23
2vqe_E162 30S ribosomal protein S5; tRNA-binding, rRNA-bindi 5e-23
3bbn_E308 Ribosomal protein S5; small ribosomal subunit, spi 1e-22
1pkp_A150 Ribosomal protein S5; 2.80A {Geobacillus stearothe 5e-22
2xzm_E296 Ribosomal protein S5 containing protein; ribosome, 5e-19
3u5c_C254 Guanine nucleotide-binding protein subunit beta-L 7e-19
3iz6_E274 40S ribosomal protein S2 (S5P); eukaryotic ribosom 8e-19
>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 3izv_I* 3izw_I* 3kc4_E 3or9_E 3ora_E 3sfs_E* 3uoq_E* Length = 167 Back     alignment and structure
>2vqe_E 30S ribosomal protein S5; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1fka_E 1gix_H* 1hnw_E* 1hnx_E* 1hnz_E* 1hr0_E 1ibk_E* 1ibl_E* 1ibm_E 1jgo_H* 1jgp_H* 1jgq_H* 1ml5_H* 1xmo_E* 1xmq_E* 1xnq_E* 1xnr_E* 1yl4_H 2b64_E* 2b9m_E* ... Length = 162 Back     alignment and structure
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 308 Back     alignment and structure
>1pkp_A Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} SCOP: d.14.1.1 d.50.1.2 PDB: 1eg0_B 1dv4_E* 1qd7_D Length = 150 Back     alignment and structure
>2xzm_E Ribosomal protein S5 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_E Length = 296 Back     alignment and structure
>3u5c_C Guanine nucleotide-binding protein subunit beta-L protein (ASC1, RACK1); translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_E 3o30_B 3o2z_B 3u5g_C 3jyv_E* 1s1h_E Length = 254 Back     alignment and structure
>3iz6_E 40S ribosomal protein S2 (S5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_e 1s1h_E Length = 274 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
3bbn_E308 Ribosomal protein S5; small ribosomal subunit, spi 100.0
2vqe_E162 30S ribosomal protein S5; tRNA-binding, rRNA-bindi 100.0
3j20_F236 30S ribosomal protein S5P; archaea, archaeal, KINK 100.0
3u5c_C254 Guanine nucleotide-binding protein subunit beta-L 100.0
3i1m_E167 30S ribosomal protein S5; ribosome structure, prot 100.0
3r8n_E150 30S ribosomal protein S5; protein biosynthesis, RN 100.0
2xzm_E296 Ribosomal protein S5 containing protein; ribosome, 100.0
1pkp_A150 Ribosomal protein S5; 2.80A {Geobacillus stearothe 100.0
3iz6_E274 40S ribosomal protein S2 (S5P); eukaryotic ribosom 100.0
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
Probab=100.00  E-value=1.2e-59  Score=448.57  Aligned_cols=222  Identities=18%  Similarity=0.293  Sum_probs=154.9

Q ss_pred             ceeeecccCCC-ChhHHHHHHHhhhhhhccccCCCCCCCCCCCCCCCCCccCCCCCCCCCChhhhhhhcccccccccccc
Q psy10165         30 RELVQQTRLPP-DPDREAKLIALRDKQFQGKYRKTPPLERGWSGGKLGGRSLGPPDPVGENTAKEIWAGVTGVSNAGKKR  108 (337)
Q Consensus        30 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~k~~ple~gW~g~~~~grsvgpp~~~~~~~~~~~~k~~~~~~~~~~~~  108 (337)
                      ..+|.|..+.+ +++.|+++.++++.+.          |++|+|.++.|++|+++++.-    .++.             
T Consensus        85 e~~~~~~~~~~~~~~~e~e~~~~~e~l~----------ergwsg~TklGrlVk~~kik~----~~~~-------------  137 (308)
T 3bbn_E           85 EGYIPPRAVDEPPFESEEEIALAYEELY----------GAAYSGESLLGNDVYAMDSKI----KKAT-------------  137 (308)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCCcCcccccccCHHHHHHHHHHhh----------ccCcccccccCccCCCccccc----hhhh-------------
Confidence            34677777744 4778888999888753          999999999999999995321    1222             


Q ss_pred             CCCCCCCcccccccCcccccccccCCCcceEEEEEeeeeeeecCCCceEEEEEEEEEeCCCCceeeecccchhHHHHHHH
Q psy10165        109 GRGRGPGKLTARDLNRGQIIGIDTFDGFDTRILEYKAVFCMKKNSGRYRTVSTLVVTGNGQGLAGFALGKSVEGRASMRN  188 (337)
Q Consensus       109 ~r~~~~~~~~~~~l~~~eiId~~~~~~f~~~VL~v~rV~kmT~~~GR~~rf~alVvVGNgnG~vG~G~GKa~ev~~Airk  188 (337)
                              .++..+++.+|+|     +|+++||+|+||+|||+ +||++||+|||||||+||+||||+|||+|+.+||+|
T Consensus       138 --------~fsl~ike~ei~d-----~f~ekVv~I~RV~KvTk-gGRr~rF~AlVVVGDgnG~VGlG~GKAkEV~~AIrK  203 (308)
T 3bbn_E          138 --------GFGSKSKKEKIRD-----GFEENVVQVRRVTKVVK-GGKHMRFRAIVVVGDKKGQVGVGVGKAKEVVSAVQK  203 (308)
T ss_dssp             --------------------------CCEEEEEEEECCEEEET-TEEEECCEEEEEEECSSSEEEEEEEECSSHHHHHHH
T ss_pred             --------ccccccccccccc-----cceeeEEEEeeeEEEec-CCcEEEEEEEEEEeCCCceEeeeeeecchHHHHHHH
Confidence                    2556677777876     48899999999999999 999999999999999999999999999999999999


Q ss_pred             HHHHHccCcEEEeccCCcceeEeEEEEEceEEEEEEeCCCccceeechHHHHHHHHcCCCcceeeecCCCChhhHHHHHH
Q psy10165        189 AKNRAGQKLIYVQRYKDHTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFF  268 (337)
Q Consensus       189 A~~~Ak~nli~V~r~~~~TIph~v~gk~gstkV~l~PaP~G~Glva~~~ir~Il~laGIkDv~aKv~Gstn~~NvvkAtf  268 (337)
                      |+.+|++||++|+++++|||||++.|+||+++|+|+|||+|+||+|++++++||++|||+||++|++||+|++|++||||
T Consensus       204 Ai~~Akknli~V~r~~~hTIph~V~Gk~Gs~~V~L~PAP~GTGIiAg~~vr~VLelAGIkDv~tKs~GStn~lN~vKATf  283 (308)
T 3bbn_E          204 AAVDARRNIITVPMTKYLTFPHRNEADYGAARVMLRPAAPGTGVIAGGAVRTVLEMAGVENALGKQLGSNNALNNARATI  283 (308)
T ss_dssp             HHHTTTTSCEECCCCSSSBCSSCEEEEETTEEEEEEECCTTCCEECCTTTHHHHTTTTCCBEEEEEEECCCTTTTTTHHH
T ss_pred             HHHHHHhCeEEEecCCCcccceEEEEEEeeEEEEEEECCCCCceecCcHHHHHHHhcCcceEEEeccCCCCchhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCHHHHHHHhCCchhhhc
Q psy10165        269 LGLMQQKSHQQLAEEQQLHLVEFS  292 (337)
Q Consensus       269 ~AL~~~~t~~~iA~~rG~~vve~~  292 (337)
                      +||.+++|++++|++||++++|+.
T Consensus       284 ~AL~k~~s~~eVA~~RGk~v~ei~  307 (308)
T 3bbn_E          284 VAVQTMRQFSDVARDRGIPMEELW  307 (308)
T ss_dssp             HHHHTCCCHHHHHTTSCCCSCCCC
T ss_pred             HHHHhcCCHHHHHHHcCCCHHHhc
Confidence            999999999999999999999884
>2vqe_E 30S ribosomal protein S5; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1fka_E 1gix_H* 1hnw_E* 1hnx_E* 1hnz_E* 1hr0_E 1ibk_E* 1ibl_E* 1ibm_E 1jgo_H* 1jgp_H* 1jgq_H* 1ml5_H* 1xmo_E* 1xmq_E* 1xnq_E* 1xnr_E* 1yl4_H 2b64_E* 2b9m_E* ... Back     alignment and structure
>3j20_F 30S ribosomal protein S5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3u5c_C Guanine nucleotide-binding protein subunit beta-L protein (ASC1, RACK1); translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_E 3o30_B 3o2z_B 3u5g_C 3jyv_E* 1s1h_E Back     alignment and structure
>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 3izv_I* 3izw_I* 3kc4_E 3or9_E 3ora_E 3sfs_E* 3uoq_E* 4gaq_E* 4gas_E* Back     alignment and structure
>2xzm_E Ribosomal protein S5 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_E Back     alignment and structure
>1pkp_A Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} SCOP: d.14.1.1 d.50.1.2 PDB: 1eg0_B 1dv4_E* 1qd7_D Back     alignment and structure
>3iz6_E 40S ribosomal protein S2 (S5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_e Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 337
d2qale181 d.14.1.1 (E:78-158) Ribosomal protein S5, C-termin 1e-23
d2uube181 d.14.1.1 (E:74-154) Ribosomal protein S5, C-termin 2e-22
d1pkpa171 d.14.1.1 (A:78-148) Ribosomal protein S5, C-termin 9e-20
d2uube269 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal 5e-09
d2qale269 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal 2e-08
d1pkpa274 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal 1e-06
>d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 81 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Translational machinery components
domain: Ribosomal protein S5, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 90.5 bits (225), Expect = 1e-23
 Identities = 22/77 (28%), Positives = 41/77 (53%)

Query: 207 TVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKA 266
           T+ H        +++F++   EGTG+I    ++ + +  G+ ++ AK  GSTNP  +V+A
Sbjct: 2   TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRA 61

Query: 267 FFLGLMQQKSHQQLAEE 283
              GL    S + +A +
Sbjct: 62  TIDGLENMNSPEMVAAK 78
>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 81 Back     information, alignment and structure
>d1pkpa1 d.14.1.1 (A:78-148) Ribosomal protein S5, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 71 Back     information, alignment and structure
>d2uube2 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 69 Back     information, alignment and structure
>d2qale2 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 69 Back     information, alignment and structure
>d1pkpa2 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 74 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
d2qale181 Ribosomal protein S5, C-terminal domain {Escherich 99.96
d2uube181 Ribosomal protein S5, C-terminal domain {Thermus t 99.96
d1pkpa171 Ribosomal protein S5, C-terminal domain {Bacillus 99.94
d2uube269 Ribosomal S5 protein, N-terminal domain {Thermus t 99.89
d2qale269 Ribosomal S5 protein, N-terminal domain {Escherich 99.88
d1pkpa274 Ribosomal S5 protein, N-terminal domain {Bacillus 99.88
>d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Translational machinery components
domain: Ribosomal protein S5, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=6.4e-31  Score=206.68  Aligned_cols=81  Identities=27%  Similarity=0.434  Sum_probs=79.6

Q ss_pred             cceeEeEEEEEceEEEEEEeCCCccceeechHHHHHHHHcCCCcceeeecCCCChhhHHHHHHHHHhcCCCHHHHHHHhC
Q psy10165        206 HTVLHDFYTQFGKTKIFVEKKPEGTGLICHRIIQEICKAVGIKDIRAKVEGSTNPQAIVKAFFLGLMQQKSHQQLAEEQQ  285 (337)
Q Consensus       206 ~TIph~v~gk~gstkV~l~PaP~G~Glva~~~ir~Il~laGIkDv~aKv~Gstn~~NvvkAtf~AL~~~~t~~~iA~~rG  285 (337)
                      .||||++.+||++++|+|+|||+|+||+||+.+++||++|||+||++|+.||+|++|++||||+||.+++||+|+|++||
T Consensus         1 gTIph~v~gk~gs~kV~l~PAp~GtGliag~~vr~ilelaGI~Dv~~K~~GS~n~~N~vkAt~~aL~~~~t~~~iA~~RG   80 (81)
T d2qale1           1 GTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG   80 (81)
T ss_dssp             TBCSSCBCCEETTEEEEBCBCCTTSCEECCHHHHHHHHHHTCCSEECEEEECCCHHHHHHHHHHHHTTCCCHHHHHHHTT
T ss_pred             CcccEEEEEEECcEEEEEEECCCCCccccCHHHHHHHHHcCcceeEeEcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhC
Confidence            39999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q psy10165        286 L  286 (337)
Q Consensus       286 ~  286 (337)
                      +
T Consensus        81 k   81 (81)
T d2qale1          81 K   81 (81)
T ss_dssp             C
T ss_pred             c
Confidence            6
>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pkpa1 d.14.1.1 (A:78-148) Ribosomal protein S5, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2uube2 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2qale2 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pkpa2 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure