Psyllid ID: psy10169

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
MCQTLRGVLDNNDMQVAIRNMSGHYYLNGNWRIDYPKPLWFAGTVFYYERNTFYAPESISALGPTTEPLYVVCDHLCGDGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPCNLRPCEGVDWLTSEWTGCDHLCGDGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPCNLRPCEGVDWLTSEWTGCEEKCGSSLETRTAVCATKNGKIYPESFCLKAKTPELQRECESPPPCEHQWYATQWSKCSAKCGTGIQTRKVFCGALDGESIKKVDDSKCDPELKYNATKNCTSSQVCKGHWMSGPWSKCSKTYGGGTMVSRTARDEVIPVEPTGKVAEADEEEECEEEEEEGEETVNNDTDEWTVDYVWTQLNGYSLGLDICPPS
ccccEEEcccccccEEEEEcccccEEEccccEEcccEEEEEccEEEEEEEcccccccEEEccccccccccEEccccccccEEEEEEEEEEEcccccEEEEcccccccccccccccccccccccccEEEcccccccccccccEEEEEEEEEEEcccccEEEccccccccccccccccccccccccccEEEcccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccEEEcccccccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccEEEcccccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEcccccEEccccccccc
cccEEEEEEcccccEEEEEccccEEEEEccEEEEccccEEEccEEEEEcccccccccccccccccccccccccccccccccEEEEEEEEEccccccEEcccccccccccccccccccccccccccEEEccccccccccccccEEEEEEEEEcccccccEEcccHccccccccccccccccccccccEEEcccccccccccccEEEEEEEEEccccccccHHHcccccccccccccccccccccEEEEcccccccccccccEEEEEEEEEcccccccEEccHHHccccccccccccccccccccccEEEcccccccccccccEEEEEEEEEccccccccccccccccHHHcccccccccccccccccccccEEEEcccccccccccccccc
mcqtlrgvldnndMQVAIRNMSghyylngnwridypkplwfagtvfyyerntfyapesisalgptteplYVVCDhlcgdgkqkrsvkcyredkdghrevvpdsacneekpesekpcnlrpcegvdwltsewtgcdhlcgdgkqkrsvkcyredkdghrevvpdsacneekpesekpcnlrpcegvdwltsewtgceekcgssleTRTAVcatkngkiypesfclkaktpelqrecespppcehqwyatqwskcsakcgtgiqtRKVFCgaldgesikkvddskcdpelkynatknctssqvckghwmsgpwskcsktygggtmvsrtardevipveptgkvaeadeeeeceeeeeegeetvnndtdewTVDYVWTQLngyslgldicpps
mcqtlrgvldnndMQVAIRNMSGHYYLNGNWRIDYPKPLWFAGTVFYYERNTFYAPESISALGPTTEPLYVVCDHLcgdgkqkrsvkcyredkdghrevvpdsacneekpesekpcnlrpCEGVDWLTSEWTGCDhlcgdgkqkrsVKCYRedkdghrevvpdsacneekpesekpcnlrpcEGVDWLTSEWTGCEEKCGSSLETRTAVCatkngkiypeSFCLKAKTPELQRECESPPPCEHQWYATQWSKCSAKCGTGIQTRKVFCGALDgesikkvddskcdPELKynatknctssqvckghwmsgpwskcsktyGGGTMvsrtardevipveptgkvaeadeeeeceeeeeegeetvnndtdewTVDYVWTQLNGyslgldicpps
MCQTLRGVLDNNDMQVAIRNMSGHYYLNGNWRIDYPKPLWFAGTVFYYERNTFYAPESISALGPTTEPLYVVCDHLCGDGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPCNLRPCEGVDWLTSEWTGCDHLCGDGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPCNLRPCEGVDWLTSEWTGCEEKCGSSLETRTAVCATKNGKIYPESFCLKAKTPELQRECESPPPCEHQWYATQWSKCSAKCGTGIQTRKVFCGALDGESIKKVDDSKCDPELKYNATKNCTSSQVCKGHWMSGPWSKCSKTYGGGTMVSRTARDEVIPVEPTGKVAeadeeeeceeeeeegeeTVNNDTDEWTVDYVWTQLNGYSLGLDICPPS
*******VLDNNDMQVAIRNMSGHYYLNGNWRIDYPKPLWFAGTVFYYERNTFYAPESISALGPTTEPLYVVCDHLCGDGKQ*****C****************************NLRPCEGVDWLTSEWTGCDHLCGDGK***********************************NLRPCEGVDWLTSEWTGCEEKCGSSLETRTAVCATKNGKIYPESFCLKAKT***********PCEHQWYATQWSKCSAKCGTGIQTRKVFCGALDGESIKKVDDSKCDPELKYNATKNCTSSQVCKGHWMSGPWSKCSKTYGGGTM*******************************************************************
*CQTLRGVLDNNDMQVAIRNMSGHYYLNGNWRIDYPKPLWFAGTVFYYERNTFYAPESISALGPTTEPLYVVCDHLCGDGKQKRSVKCYREDKDGHR**********************PCEGVDWLTSEWTGCDHLCGDGKQKRSVKCYREDK***************************CEGVDWLTSEWTGCEEKCGSSLETRTAVCAT***************T**LQRECESPPPCEHQWYATQWSKCSAKCGTGIQTRKVFCGALDG***************K***TKNCTSSQVCKGHWMSGPWSKCSKTYGGGTMVSRTARDE****************************TVNNDTDEWTVDYVWTQLNGYSLGLDICPP*
MCQTLRGVLDNNDMQVAIRNMSGHYYLNGNWRIDYPKPLWFAGTVFYYERNTFYAPESISALGPTTEPLYVVCDHLCGDGKQKRSVKCY***************************NLRPCEGVDWLTSEWTGCDHLCGDGKQKRSVKCY***************************NLRPCEGVDWLTSEWTGCEEKCGSSLETRTAVCATKNGKIYPESFCLKAKT***********PCEHQWYATQWSKCSAKCGTGIQTRKVFCGALDGESIKKVDDSKCDPELKYNATKNCTSSQVCKGHWMSGPWSKCSKTYGGGTMVSRTARDEVIPVEPTGK**********************NDTDEWTVDYVWTQLNGYSLGLDICPPS
MCQTLRGVLDNNDMQVAIRNMSGHYYLNGNWRIDYPKPLWFAGTVFYYERNTFYAPESISALGPTTEPLYVVCDHLCGDGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPCNLRPCEGVDWLTSEWTGCDHLCGDGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPCNLRPCEGVDWLTSEWTGCEEKCGSSLETRTAVCATKNGKIYPESFCLKAKTPELQRECESPPPCEHQWYATQWSKCSAKCGTGIQTRKVFCGALDGESIKKVDDSKCDPELKYNATKNCTSSQVCKGHWMSGPWSKCSKTYGGGTMVSRTARDEVI***********DEEE*CEEEEEEGEETVNNDTDEWTVDYVWTQLNGYSLGLDIC***
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MCQTLRGVLDNNDMQVAIRNMSGHYYLNGNWRIDYPKPLWFAGTVFYYERNTFYAPESISALGPTTEPLYVVCDHLCGDGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPCNLRPCEGVDWLTSEWTGCDHLCGDGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPCNLRPCEGVDWLTSEWTGCEEKCGSSLETRTAVCATKNGKIYPESFCLKAKTPELQRECESPPPCEHQWYATQWSKCSAKCGTGIQTRKVFCGALDGESIKKVDDSKCDPELKYNATKNCTSSQVCKGHWMSGPWSKCSKTYGGGTMVSRTARDEVIPVEPTGKVAxxxxxxxxxxxxxxxxxxxxxDTDEWTVDYVWTQLNGYSLGLDICPPS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query390 2.2.26 [Sep-21-2011]
Q868Z9 2898 Papilin OS=Drosophila mel no N/A 0.684 0.092 0.457 6e-58
O76840 2167 Papilin OS=Caenorhabditis yes N/A 0.633 0.113 0.360 2e-39
Q4VC171219 A disintegrin and metallo yes N/A 0.787 0.251 0.297 1e-33
Q9UKP51117 A disintegrin and metallo no N/A 0.643 0.224 0.291 2e-31
Q8TE601221 A disintegrin and metallo no N/A 0.779 0.248 0.293 5e-31
Q9EPX2 1280 Papilin OS=Mus musculus G no N/A 0.630 0.192 0.314 1e-29
O95428 1278 Papilin OS=Homo sapiens G yes N/A 0.630 0.192 0.300 2e-29
Q8TE571224 A disintegrin and metallo no N/A 0.758 0.241 0.268 2e-27
Q69Z281222 A disintegrin and metallo no N/A 0.764 0.243 0.270 1e-26
Q6ZMP01018 Thrombospondin type-1 dom no N/A 0.625 0.239 0.321 9e-26
>sp|Q868Z9|PPN_DROME Papilin OS=Drosophila melanogaster GN=Ppn PE=1 SV=2 Back     alignment and function desciption
 Score =  225 bits (573), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 129/282 (45%), Positives = 171/282 (60%), Gaps = 15/282 (5%)

Query: 73  CDHLCG-DGKQKRSVKCYREDKDGHREVVPDSACNEE---KPESEKPCNLRPCEGVDWLT 128
           C   CG DG Q RS+ C R    G   V  D+ C +E   KP +++ CN        +  
Sbjct: 408 CSKGCGSDGFQNRSITCERISSSGEHTVEEDAVCLKEVGNKPATKQECNRDVKNCPKYHL 467

Query: 129 SEWTGCDHLCGDGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPCNLRPCEGVDWL 188
             WT CD LCGDGKQ R V C+ E+ +GH+ V+P+  C EEKPE+EK C L PCEGVDW+
Sbjct: 468 GPWTPCDKLCGDGKQTRKVTCFIEE-NGHKRVLPEEDCVEEKPETEKSCLLTPCEGVDWI 526

Query: 189 TSEWTGCEEKCGSSLETRTAVCATKNGKIYPESFCLKAKTPELQRECESPPPCEHQWYAT 248
            S+W+GC   CG + ETRTA+C  K GK+YPE FC + + P L R C+SP  CE QW+++
Sbjct: 527 ISQWSGCN-ACGQNTETRTAICGNKEGKVYPEEFC-EPEVPTLSRPCKSPK-CEAQWFSS 583

Query: 249 QWSKCSAKCGTGIQTRKVFCGALDGESIKKVDD-SKCDPELKYNATKNCTSSQ-VCKGHW 306
           +WSKCSA CG G+++R V CG  DG+++   DD SKC+ E K  + ++C   + VC G W
Sbjct: 584 EWSKCSAPCGKGVKSRIVICGEFDGKTVTPADDDSKCNKETKPESEQDCEGEEKVCPGEW 643

Query: 307 MSGPWSKCSKTYGGGTMVSRTARDEVIPVEPTGKVAEADEEE 348
            +GPW KCSK  GGG  V      EV+ +    K    DEE+
Sbjct: 644 FTGPWGKCSKPCGGGERVR-----EVLCLSNGTKSVNCDEEK 680
Essential extracellular matrix (ECM) protein that influences cell rearrangements. May act by modulating metalloproteinases action during organogenesis. Able to non-competitively inhibit procollagen N-proteinase, an ADAMTS metalloproteinase.
Drosophila melanogaster (taxid: 7227)
>sp|O76840|PPN1_CAEEL Papilin OS=Caenorhabditis elegans GN=mig-6 PE=1 SV=1 Back     alignment and function description
>sp|Q4VC17|ATS18_MOUSE A disintegrin and metalloproteinase with thrombospondin motifs 18 OS=Mus musculus GN=Adamts18 PE=2 SV=2 Back     alignment and function description
>sp|Q9UKP5|ATS6_HUMAN A disintegrin and metalloproteinase with thrombospondin motifs 6 OS=Homo sapiens GN=ADAMTS6 PE=2 SV=2 Back     alignment and function description
>sp|Q8TE60|ATS18_HUMAN A disintegrin and metalloproteinase with thrombospondin motifs 18 OS=Homo sapiens GN=ADAMTS18 PE=1 SV=3 Back     alignment and function description
>sp|Q9EPX2|PPN_MOUSE Papilin OS=Mus musculus GN=Papln PE=2 SV=2 Back     alignment and function description
>sp|O95428|PPN_HUMAN Papilin OS=Homo sapiens GN=PAPLN PE=2 SV=4 Back     alignment and function description
>sp|Q8TE57|ATS16_HUMAN A disintegrin and metalloproteinase with thrombospondin motifs 16 OS=Homo sapiens GN=ADAMTS16 PE=2 SV=3 Back     alignment and function description
>sp|Q69Z28|ATS16_MOUSE A disintegrin and metalloproteinase with thrombospondin motifs 16 OS=Mus musculus GN=Adamts16 PE=2 SV=2 Back     alignment and function description
>sp|Q6ZMP0|THSD4_HUMAN Thrombospondin type-1 domain-containing protein 4 OS=Homo sapiens GN=THSD4 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
383852694 2894 PREDICTED: papilin-like [Megachile rotun 0.917 0.123 0.349 3e-70
242022723 2838 papilin, putative [Pediculus humanus cor 0.756 0.103 0.451 3e-68
328724572 2553 PREDICTED: papilin-like isoform 1 [Acyrt 0.807 0.123 0.368 3e-68
307206898 2983 Papilin [Harpegnathos saltator] 0.938 0.122 0.342 3e-68
328724570 2494 PREDICTED: papilin-like isoform 2 [Acyrt 0.807 0.126 0.368 3e-68
380025477 2813 PREDICTED: papilin-like [Apis florea] 0.735 0.102 0.445 7e-66
340713638 3067 PREDICTED: papilin-like [Bombus terrestr 0.638 0.081 0.509 6e-65
350422357 2962 PREDICTED: LOW QUALITY PROTEIN: papilin- 0.638 0.084 0.505 3e-64
345489863 2588 PREDICTED: papilin-like [Nasonia vitripe 0.738 0.111 0.469 7e-64
307185838 2944 Papilin [Camponotus floridanus] 0.648 0.085 0.505 1e-63
>gi|383852694|ref|XP_003701860.1| PREDICTED: papilin-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  271 bits (694), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 183/523 (34%), Positives = 250/523 (47%), Gaps = 165/523 (31%)

Query: 2   CQTLRGVLDNNDMQ---------------------------VAIRNMSGHYYLNGNWRID 34
           C T+ G+ D +D+Q                           +AIRN +G+YYLNGNWRID
Sbjct: 211 CNTVSGLFDTDDLQAGYIDIILIPKSATNIVIKELEPSNNYLAIRNTTGYYYLNGNWRID 270

Query: 35  YPKPLWFAGTVFYYERNT--FYAPESISALGPTTEPLYVVC---DHLCG----------- 78
           +P+ L FAG++F+Y R+   F AP++I+ALGPT+EP+YVV    DH  G           
Sbjct: 271 FPRSLKFAGSIFHYSRDPQGFSAPDTITALGPTSEPIYVVLLYQDHNVGVHYEYSIPKRI 330

Query: 79  ------------------------DGKQKRSVKCYREDKDGHREVVPDSACNEE-KPESE 113
                                    G Q R + C R       + V +S C+ + +P+  
Sbjct: 331 SQQTDADSYAWITDEFSSCSSSCGGGYQSRRIACVRRRDS---QPVDESLCDPQMEPDDT 387

Query: 114 KPCNLRPCEGVDWLTSEWTGCDHLCGD-GKQKRSVKCYREDKDGHREVVPDSACNE---- 168
           + C+  PC  V W+  EW+ C   CG+ G+Q+R +KC +    G   VV DS C E    
Sbjct: 388 QACSPEPCPPV-WVEGEWSPCSKHCGEGGEQQREIKCEQVISGGIPTVVDDSQCLEKVGP 446

Query: 169 EKPESE----------------KPCNL--------------------------------- 179
           + P S+                KPC+                                  
Sbjct: 447 KGPTSQECNKDVPCPQFHVGPWKPCDHLCGPGKQTRRVTCYKKVEGKIEVLEDDACEGEV 506

Query: 180 ----RPCE-----GVDWLTSEWTGCEEKCGSSLETRTAVCATKNGKIYPESFCLKAKTPE 230
               +PCE     G+DW+TS+W+GC+++CG + ETRT  CAT++G +YP+  C   K PE
Sbjct: 507 PEREKPCELRPCAGLDWVTSDWSGCDDRCGLTQETRTTHCATQDGTVYPDEKCDPEKKPE 566

Query: 231 LQRECESPPPCEHQWYATQWSKCSAKCGTGIQTRKVFCGALDGESIKKVDDSKCDPELKY 290
           L RECES   C+  W+A+QWS CSA CG+G+QTRKVFCG  D E++KKV D KCD   K+
Sbjct: 567 LNRECESKKECDFLWFASQWSDCSASCGSGVQTRKVFCGTFDDETVKKVPDEKCDASKKF 626

Query: 291 NATKNCTSSQVCKGHWMSGPWSKCSKTYGGGTMVSRTA---------------------- 328
           N TKNCT+ + CKG W +GPWSKCSK  G G M  +                        
Sbjct: 627 NDTKNCTAEEECKGEWFAGPWSKCSKPCGSGMMSRKVICMKDNVTVSTGCDASTIMFATE 686

Query: 329 --------RDEVIPVEPTGKVAEADEEEECEEEEEEGEETVNN 363
                    DEVIPV+P       DE+EECE  E+E   TV++
Sbjct: 687 NCNDQPCEEDEVIPVQPDKIKDLTDEDEECEVYEDEDFVTVSS 729

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242022723|ref|XP_002431788.1| papilin, putative [Pediculus humanus corporis] gi|212517113|gb|EEB19050.1| papilin, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|328724572|ref|XP_001951980.2| PREDICTED: papilin-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307206898|gb|EFN84744.1| Papilin [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|328724570|ref|XP_003248188.1| PREDICTED: papilin-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|380025477|ref|XP_003696500.1| PREDICTED: papilin-like [Apis florea] Back     alignment and taxonomy information
>gi|340713638|ref|XP_003395347.1| PREDICTED: papilin-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350422357|ref|XP_003493139.1| PREDICTED: LOW QUALITY PROTEIN: papilin-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|345489863|ref|XP_001601735.2| PREDICTED: papilin-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307185838|gb|EFN71679.1| Papilin [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
FB|FBgn0003137 2898 Ppn "Papilin" [Drosophila mela 0.630 0.084 0.476 4.5e-79
WB|WBGene00003242 2167 mig-6 [Caenorhabditis elegans 0.628 0.113 0.368 9e-55
UNIPROTKB|E1C0281207 ADAMTS18 "Uncharacterized prot 0.620 0.200 0.324 3.5e-43
UNIPROTKB|B4DR13658 THSD4 "cDNA FLJ53165, weakly s 0.620 0.367 0.326 1.5e-42
MGI|MGI:24426001219 Adamts18 "a disintegrin-like a 0.620 0.198 0.315 2.5e-42
UNIPROTKB|F1PHU1658 THSD4 "Uncharacterized protein 0.607 0.360 0.330 9.1e-42
UNIPROTKB|F1P2U7 1275 F1P2U7 "Uncharacterized protei 0.494 0.151 0.344 1e-41
UNIPROTKB|F1NVQ5531 THSD4 "Uncharacterized protein 0.605 0.444 0.325 1e-41
UNIPROTKB|Q6ZMP01018 THSD4 "Thrombospondin type-1 d 0.620 0.237 0.326 1.7e-41
UNIPROTKB|J9JHI3745 THSD4 "Uncharacterized protein 0.607 0.318 0.330 2.2e-41
FB|FBgn0003137 Ppn "Papilin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 679 (244.1 bits), Expect = 4.5e-79, Sum P(2) = 4.5e-79
 Identities = 124/260 (47%), Positives = 165/260 (63%)

Query:    73 CDHLCG-DGKQKRSVKCYREDKDGHREVVPDSACNEE---KPESEKPCN--LRPCEGVDW 126
             C   CG DG Q RS+ C R    G   V  D+ C +E   KP +++ CN  ++ C    +
Sbjct:   408 CSKGCGSDGFQNRSITCERISSSGEHTVEEDAVCLKEVGNKPATKQECNRDVKNCP--KY 465

Query:   127 LTSEWTGCDHLCGDGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPCNLRPCEGVD 186
                 WT CD LCGDGKQ R V C+ E+ +GH+ V+P+  C EEKPE+EK C L PCEGVD
Sbjct:   466 HLGPWTPCDKLCGDGKQTRKVTCFIEE-NGHKRVLPEEDCVEEKPETEKSCLLTPCEGVD 524

Query:   187 WLTSEWTGCEEKCGSSLETRTAVCATKNGKIYPESFCLKAKTPELQRECESPPPCEHQWY 246
             W+ S+W+GC   CG + ETRTA+C  K GK+YPE FC + + P L R C+SP  CE QW+
Sbjct:   525 WIISQWSGCNA-CGQNTETRTAICGNKEGKVYPEEFC-EPEVPTLSRPCKSPK-CEAQWF 581

Query:   247 ATQWSKCSAKCGTGIQTRKVFCGALDGESIKKVDD-SKCDPELKYNATKNCTSSQ-VCKG 304
             +++WSKCSA CG G+++R V CG  DG+++   DD SKC+ E K  + ++C   + VC G
Sbjct:   582 SSEWSKCSAPCGKGVKSRIVICGEFDGKTVTPADDDSKCNKETKPESEQDCEGEEKVCPG 641

Query:   305 HWMSGPWSKCSKTYGGGTMV 324
              W +GPW KCSK  GGG  V
Sbjct:   642 EWFTGPWGKCSKPCGGGERV 661
GO:0005604 "basement membrane" evidence=IDA
GO:0005578 "proteinaceous extracellular matrix" evidence=NAS
GO:0030198 "extracellular matrix organization" evidence=IMP
GO:0005201 "extracellular matrix structural constituent" evidence=IMP
GO:0008270 "zinc ion binding" evidence=IEA
GO:0004222 "metalloendopeptidase activity" evidence=IEA
GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA
WB|WBGene00003242 mig-6 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E1C028 ADAMTS18 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|B4DR13 THSD4 "cDNA FLJ53165, weakly similar to Homo sapiens thrombospondin repeat containing 1 (TSRC1), transcript variant 1, mRNA" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2442600 Adamts18 "a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PHU1 THSD4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2U7 F1P2U7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NVQ5 THSD4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZMP0 THSD4 "Thrombospondin type-1 domain-containing protein 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9JHI3 THSD4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
pfam05986114 pfam05986, ADAM_spacer1, ADAM-TS Spacer 1 9e-18
smart0020953 smart00209, TSP1, Thrombospondin type 1 repeats 2e-04
>gnl|CDD|218841 pfam05986, ADAM_spacer1, ADAM-TS Spacer 1 Back     alignment and domain information 
 Score = 78.0 bits (193), Expect = 9e-18
 Identities = 29/55 (52%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 17 AIRNMSGHYYLNGNWRIDYPKPLWFAGTVFYYERNTFYAPESISALGPTTEPLYV 71
          A++N  G YYLNGNW I +      AGTVF Y R +  APE ++A GPT EPL V
Sbjct: 42 ALKNSDGEYYLNGNWTISWSGTFELAGTVFEYSR-SDDAPERLTATGPTNEPLTV 95

This family represents the Spacer-1 region from the ADAM-TS family of metalloproteinases. Length = 114
>gnl|CDD|214559 smart00209, TSP1, Thrombospondin type 1 repeats Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 390
KOG4597|consensus560 100.0
KOG4597|consensus560 99.91
KOG3538|consensus845 99.73
PF05986114 ADAM_spacer1: ADAM-TS Spacer 1; InterPro: IPR01029 99.64
KOG3538|consensus845 99.41
KOG3539|consensus508 99.27
KOG3539|consensus508 99.08
smart0020953 TSP1 Thrombospondin type 1 repeats. Type 1 repeats 98.74
smart0020953 TSP1 Thrombospondin type 1 repeats. Type 1 repeats 98.74
PF0009049 TSP_1: Thrombospondin type 1 domain; InterPro: IPR 98.55
PF0009049 TSP_1: Thrombospondin type 1 domain; InterPro: IPR 98.42
PTZ00087340 thrombosponding-related protein; Provisional 98.33
PTZ00087340 thrombosponding-related protein; Provisional 98.21
PTZ00441576 sporozoite surface protein 2 (SSP2); Provisional 97.52
PTZ00441 576 sporozoite surface protein 2 (SSP2); Provisional 97.39
KOG1480|consensus 909 96.36
KOG1480|consensus 909 96.15
>KOG4597|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.1e-35  Score=281.86  Aligned_cols=328  Identities=25%  Similarity=0.507  Sum_probs=255.0

Q ss_pred             ceeccCccEEEcCCccCCCCeeEEECCEEEEEEeCCCCCCcceeecCCCccceeecC-----------------------
Q psy10169         17 AIRNMSGHYYLNGNWRIDYPKPLWFAGTVFYYERNTFYAPESISALGPTTEPLYVVC-----------------------   73 (390)
Q Consensus        17 Al~~~~g~y~lNg~~~i~~~~~~~~aGt~~~Y~r~~~~~~e~l~~~GP~~e~~~i~~-----------------------   73 (390)
                      +++|....+|+||+..+.....|+.. +.|.|..   .++|.+.+.+|..+.+.+-.                       
T Consensus        67 e~~ngek~~~~~g~~~~~ve~r~~~~-~k~~~~g---~~pea~~~~~~~~qq~s~~dif~~~~r~~~~~~~~~eP~~~~~  142 (560)
T KOG4597|consen   67 ECKNGEKCCYNVGGGLSCVEARVEVG-TKFVPDG---AEPEALCAQFPCSQQGSVCDIFDGQPRCTCIDRCEKEPSFTCA  142 (560)
T ss_pred             cccccchhceecCCchhheeeecccc-ceecCCC---CCccchhccCccccccccccccCCCCCcccccccccCCchhhh
Confidence            66666678999999999888888875 8898855   36788888888877764322                       


Q ss_pred             ------------CCCCCCcEEEEEEEEEEecCCCCeeeecCCCCCC---CCCCCCCCCCCCCCCCCccccCCCccccccc
Q psy10169         74 ------------DHLCGDGKQKRSVKCYREDKDGHREVVPDSACNE---EKPESEKPCNLRPCEGVDWLTSEWTGCDHLC  138 (390)
Q Consensus        74 ------------~~~CG~G~q~r~~~C~~~~~~g~~~~v~~~~C~~---~~P~~~~~C~~~~C~~~~W~~~~Ws~CS~tC  138 (390)
                                  +..||+|+|.|.++|+....   ...+++..|+.   +.|.....|++-+| +..|.++.|+.||.+|
T Consensus       143 d~~~k~~n~t~cs~aCgKG~q~~iv~C~~~~t---~~~~~~~~cettm~ptpe~e~~c~l~~c-pa~w~vg~wetcS~tC  218 (560)
T KOG4597|consen  143 DDGLKYYNCTMCSEACGKGVQLRIVYCIHGKT---WPRVSPDPCETTMAPTPEFEPSCALVDC-PAEWFVGDWETCSSTC  218 (560)
T ss_pred             hcCceecceEehhhhhcCCceeeeEEEecccc---CCCCCCCccccccCCCCCCCCCcccccC-cchhhcccchhhcccc
Confidence                        23399999999999997643   34678889988   44555556999999 7899999999999999


Q ss_pred             C-CCceEEEEEeeecCCCCCeeecCCCCCCCCCCCCccccCCCCCcccceeec-cccccccccCCCcEEEEEEeeCCCC-
Q psy10169        139 G-DGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPCNLRPCEGVDWLTS-EWTGCEEKCGSSLETRTAVCATKNG-  215 (390)
Q Consensus       139 G-~G~q~R~~~C~~~~~~g~~~~v~~~~C~~~~P~~~~~C~~~~C~~~~W~~~-~Ws~CS~sCG~G~~~R~v~C~~~~~-  215 (390)
                      | .|.|.|.|+|.+...++...++. ..+...+|..+..|++..|+  +|... .|+.||+.||.|+++|.|.|....+ 
T Consensus       219 g~~G~q~r~V~c~qv~anr~~vv~~-~nq~~e~p~vtstcql~ic~--ewq~~a~w~tCs~rcg~g~~~rdv~c~s~~ge  295 (560)
T KOG4597|consen  219 GVQGRQYRVVTCEQVFANRENVVMR-PNQTVENPVVTSTCQLVICN--EWQADAGWYTCSARCGAGFLRRDVPCSSVKGE  295 (560)
T ss_pred             cccCCcCceeeeehhhccccceeec-CccccCCcceeeeeeEEEcc--hhhcCCCceeeccccccceeeccceeeeeccc
Confidence            9 79999999999886666555544 55677788999999999998  79666 9999999999999999999975322 


Q ss_pred             ---ccccCCcccCC--------------------------------------------------------------CCCc
Q psy10169        216 ---KIYPESFCLKA--------------------------------------------------------------KTPE  230 (390)
Q Consensus       216 ---~~~~~~~C~~~--------------------------------------------------------------~~p~  230 (390)
                         ..++...++..                                                              ++|.
T Consensus       296 ~a~daads~p~~~~~~~~e~~~cdmgpC~g~~f~tew~~~~~aqcg~~~~~rsv~C~~s~~~~~p~E~C~~a~~sg~~pa  375 (560)
T KOG4597|consen  296 GALDAADSCPADEQEKPAECLTCDMGPCTGLTFVTEWSWHLDAQCGDCETTRSVVCKGSQGRFEPLEACLVACASGPRPA  375 (560)
T ss_pred             ccccccccCCcccccCchhhcCCCCcccCCccchhhhhhhcccccCCceeeeeeeecCccccccchhhhhhhccCCCCCc
Confidence               11111111111                                                              3455


Q ss_pred             cccccCCCCCCC--CCccccCCcCCCcccCCCeEEEEEEeecCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCccc
Q psy10169        231 LQRECESPPPCE--HQWYATQWSKCSAKCGTGIQTRKVFCGALDGESIKKVDDSKCDPELKYNATKNCTSSQVCKGHWMS  308 (390)
Q Consensus       231 ~~~~C~~~~~C~--~~W~~s~Ws~CS~tCG~G~q~R~~~C~~~~~~~~~~~~~~~C~~~~~p~~~~~C~~~~~Cp~~W~~  308 (390)
                      ..++|.. .||+  ++|.+++|++|+..||+|.+.|.+.|+...+..+..++.+.|...++|...+.|... +|...|+.
T Consensus       376 d~~pc~~-GPC~~e~rW~~s~wsqCs~eCg~g~~~r~vica~~~a~~f~v~~p~~ca~~~r~~~~~s~~~~-~c~~~w~s  453 (560)
T KOG4597|consen  376 DTRPCAQ-GPCPCEPRWAYSPWSQCSGECGGGGNNREVICACEQACPFEVVDPSCCACLPRPKLTQSCCRS-DCTITWRS  453 (560)
T ss_pred             ccccccc-CCCCCccceeecchhhhccccCCCCcceeEEEeeecCCCcccCCcccccccCCcccccccccc-ccceeeee
Confidence            5566666 6665  478889999999999999999999999888887777788999999899999999887 79999999


Q ss_pred             cCCcccccccCCCEEEEEecCCCC--CCCCCCCcccCCcc-ccccccccccc
Q psy10169        309 GPWSKCSKTYGGGTMVSRTARDEV--IPVEPTGKVAEADE-EEECEEEEEEG  357 (390)
Q Consensus       309 s~Ws~CS~tCG~G~q~R~r~c~~~--~~~~~~~~~~~~~~-~~~C~~~~~~~  357 (390)
                      ++||+|+++||+|.|.|.+.|-.-  .++.....+...-+ ...|...+|.+
T Consensus       454 Tewsec~~scgGgaqvr~~~cL~ddkm~L~~lc~~~Lkps~k~~cna~pCp~  505 (560)
T KOG4597|consen  454 TEWSECPASCGGGAQVRVVVCLKDDKMGLKFLCDEQLKPSEKQDCNACPCPN  505 (560)
T ss_pred             cccccCchhcCCcceEeeeeecccCcccccccCccccChhhcCCCCCCCCCC
Confidence            999999999999999999977433  33333332222222 23688777774

>KOG4597|consensus Back     alignment and domain information
>KOG3538|consensus Back     alignment and domain information
>PF05986 ADAM_spacer1: ADAM-TS Spacer 1; InterPro: IPR010294 This domain represents the Spacer-1 domain from the ADAM-TS family of metalloproteinases [] Back     alignment and domain information
>KOG3538|consensus Back     alignment and domain information
>KOG3539|consensus Back     alignment and domain information
>KOG3539|consensus Back     alignment and domain information
>smart00209 TSP1 Thrombospondin type 1 repeats Back     alignment and domain information
>smart00209 TSP1 Thrombospondin type 1 repeats Back     alignment and domain information
>PF00090 TSP_1: Thrombospondin type 1 domain; InterPro: IPR000884 Thrombospondins are multimeric multidomain glycoproteins that function at cell surfaces and in the extracellular matrix milieu Back     alignment and domain information
>PF00090 TSP_1: Thrombospondin type 1 domain; InterPro: IPR000884 Thrombospondins are multimeric multidomain glycoproteins that function at cell surfaces and in the extracellular matrix milieu Back     alignment and domain information
>PTZ00087 thrombosponding-related protein; Provisional Back     alignment and domain information
>PTZ00087 thrombosponding-related protein; Provisional Back     alignment and domain information
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional Back     alignment and domain information
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional Back     alignment and domain information
>KOG1480|consensus Back     alignment and domain information
>KOG1480|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
1w0r_A442 Properdin, factor P; X-RAY scattering, analytical 2e-21
1w0r_A 442 Properdin, factor P; X-RAY scattering, analytical 8e-20
1w0r_A 442 Properdin, factor P; X-RAY scattering, analytical 4e-15
3t5o_A 913 Complement component C6; macpf, MAC, membrane atta 1e-07
3t5o_A 913 Complement component C6; macpf, MAC, membrane atta 1e-07
3t5o_A 913 Complement component C6; macpf, MAC, membrane atta 1e-05
3r6b_A153 Thrombospondin-1; cell adhesion, disulfide bond, E 9e-05
3r6b_A153 Thrombospondin-1; cell adhesion, disulfide bond, E 3e-04
3r6b_A153 Thrombospondin-1; cell adhesion, disulfide bond, E 6e-04
3ghm_A410 A disintegrin and metalloproteinase with thrombos 3e-04
1lsl_A113 Thrombospondin 1; TSP-1, TSR, cell adhesion; HET: 4e-04
1lsl_A113 Thrombospondin 1; TSP-1, TSR, cell adhesion; HET: 4e-04
1lsl_A113 Thrombospondin 1; TSP-1, TSR, cell adhesion; HET: 8e-04
>1w0r_A Properdin, factor P; X-RAY scattering, analytical ultracentrifugation, complement, thrombospondin type I repeats, constrained modelling; NMR {Homo sapiens} PDB: 1w0s_A Length = 442 Back     alignment and structure
 Score = 94.3 bits (234), Expect = 2e-21
 Identities = 39/267 (14%), Positives = 64/267 (23%), Gaps = 31/267 (11%)

Query: 73  CDHLCGDGKQKRSVKCYREDKDG-HREVVPDSACNEEKPESEKPCNLRPCE--GVDWLTS 129
           C   C  G  +      R+       +  P   C     E  +   L PC   G      
Sbjct: 178 CSASCHGGPHEPKETRSRKCSAPEPSQKPPGKPCPGLAYEQRRCTGLPPCPVAGGWGPWG 237

Query: 130 EWTGCDHLCGDGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPCNLRPCEGVDWLT 189
             + C   CG G+      C     +          C  +   +       PC       
Sbjct: 238 PVSPCPVTCGLGQTMEQRTC-----NHPVPQHGGPFCAGDATRTHICNTAVPCPVDGEWD 292

Query: 190 --SEWTGCEEKCGSSLETRTAVCATK-----NGKIYPESFCLKAKTPELQRECESPPPCE 242
              EW+ C  +   S+  +             G+ +    C   +            P +
Sbjct: 293 SWGEWSPCIRRNMKSISCQEIPGQQSRGRTCRGRKFDGHRCAGQQQDIRHCYSIQHCPLK 352

Query: 243 HQWYA-TQWSKCSAKCGTG-IQTRKVFCGALDGESIKKVDDSKCDPELKYNATKNCTSSQ 300
             W   + W  C   CG    + R+  C  L  +    V                     
Sbjct: 353 GSWSEWSTWGLCMPPCGPNPTRARQRLCTPLLPKYPPTVSM--------------VEGQG 398

Query: 301 VCKGHWMSGPWSKCSKTYGGGTMVSRT 327
                +   P  +C +  G   +V   
Sbjct: 399 EKNVTFWGRPLPRCEELQGQKLVVEEK 425
>1w0r_A Properdin, factor P; X-RAY scattering, analytical ultracentrifugation, complement, thrombospondin type I repeats, constrained modelling; NMR {Homo sapiens} PDB: 1w0s_A Length = 442 Back     alignment and structure
>1w0r_A Properdin, factor P; X-RAY scattering, analytical ultracentrifugation, complement, thrombospondin type I repeats, constrained modelling; NMR {Homo sapiens} PDB: 1w0s_A Length = 442 Back     alignment and structure
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* Length = 913 Back     alignment and structure
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* Length = 913 Back     alignment and structure
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* Length = 913 Back     alignment and structure
>3r6b_A Thrombospondin-1; cell adhesion, disulfide bond, EGF-like domain, TSP-1 type 1; 2.40A {Homo sapiens} Length = 153 Back     alignment and structure
>3r6b_A Thrombospondin-1; cell adhesion, disulfide bond, EGF-like domain, TSP-1 type 1; 2.40A {Homo sapiens} Length = 153 Back     alignment and structure
>3r6b_A Thrombospondin-1; cell adhesion, disulfide bond, EGF-like domain, TSP-1 type 1; 2.40A {Homo sapiens} Length = 153 Back     alignment and structure
>3ghm_A A disintegrin and metalloproteinase with thrombos motifs 13; thrombospondin type-1 motif, beta sandwich, hydrolase; HET: NAG FUC BGC; 2.60A {Homo sapiens} PDB: 3ghn_A* Length = 410 Back     alignment and structure
>1lsl_A Thrombospondin 1; TSP-1, TSR, cell adhesion; HET: FUL FUC; 1.90A {Homo sapiens} SCOP: g.60.1.1 g.60.1.1 Length = 113 Back     alignment and structure
>1lsl_A Thrombospondin 1; TSP-1, TSR, cell adhesion; HET: FUL FUC; 1.90A {Homo sapiens} SCOP: g.60.1.1 g.60.1.1 Length = 113 Back     alignment and structure
>1lsl_A Thrombospondin 1; TSP-1, TSR, cell adhesion; HET: FUL FUC; 1.90A {Homo sapiens} SCOP: g.60.1.1 g.60.1.1 Length = 113 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query390
1w0r_A442 Properdin, factor P; X-RAY scattering, analytical 100.0
1w0r_A 442 Properdin, factor P; X-RAY scattering, analytical 100.0
3r6b_A153 Thrombospondin-1; cell adhesion, disulfide bond, E 99.74
3r6b_A153 Thrombospondin-1; cell adhesion, disulfide bond, E 99.73
1lsl_A113 Thrombospondin 1; TSP-1, TSR, cell adhesion; HET: 99.73
1lsl_A113 Thrombospondin 1; TSP-1, TSR, cell adhesion; HET: 99.73
3ghm_A410 A disintegrin and metalloproteinase with thrombos 99.3
3t5o_A 913 Complement component C6; macpf, MAC, membrane atta 99.14
3t5o_A 913 Complement component C6; macpf, MAC, membrane atta 99.05
2bbx_A49 Trap, thrombospondin-related anonymous protein; el 98.76
1vex_A56 F-spondin; TSR, cell adhesion; NMR {Rattus norvegi 98.72
1vex_A56 F-spondin; TSR, cell adhesion; NMR {Rattus norvegi 98.61
2bbx_A49 Trap, thrombospondin-related anonymous protein; el 98.58
3vdj_A77 Circumsporozoite (CS) protein; TSR, ATSR, cell inv 98.56
1szl_A61 F-spondin; TSR, cell adhesion; NMR {Rattus norvegi 98.49
1szl_A61 F-spondin; TSR, cell adhesion; NMR {Rattus norvegi 98.36
2rjq_A378 Adamts-5; metalloprotease domain, aggrecanase, cle 98.27
3vdj_A77 Circumsporozoite (CS) protein; TSR, ATSR, cell inv 98.23
2rjq_A378 Adamts-5; metalloprotease domain, aggrecanase, cle 98.07
4hqf_A281 Thrombospondin-related anonymous protein, trap; ma 97.82
4hqf_A281 Thrombospondin-related anonymous protein, trap; ma 97.61
3ghm_A 410 A disintegrin and metalloproteinase with thrombos 97.61
3ojy_A554 Complement component C8 alpha chain; macpf, lipoca 96.65
3ojy_A554 Complement component C8 alpha chain; macpf, lipoca 96.43
4hqo_A266 Sporozoite surface protein 2; malaria, gliding mot 96.02
4hqo_A266 Sporozoite surface protein 2; malaria, gliding mot 95.98
3ojy_B537 Complement component C8 beta chain; macpf, lipocal 92.2
3ojy_B 537 Complement component C8 beta chain; macpf, lipocal 90.53
>1w0r_A Properdin, factor P; X-RAY scattering, analytical ultracentrifugation, complement, thrombospondin type I repeats, constrained modelling; NMR {Homo sapiens} PDB: 1w0s_A Back     alignment and structure
Probab=100.00  E-value=4.9e-40  Score=329.12  Aligned_cols=278  Identities=21%  Similarity=0.472  Sum_probs=213.7

Q ss_pred             CCCCCCcEEEEEEEEEEecCCCCeeeecCCCCCC-CC----CCCCCCCCCCCCCCC--ccc-cCCCcccccccCCCceEE
Q psy10169         74 DHLCGDGKQKRSVKCYREDKDGHREVVPDSACNE-EK----PESEKPCNLRPCEGV--DWL-TSEWTGCDHLCGDGKQKR  145 (390)
Q Consensus        74 ~~~CG~G~q~r~~~C~~~~~~g~~~~v~~~~C~~-~~----P~~~~~C~~~~C~~~--~W~-~~~Ws~CS~tCG~G~q~R  145 (390)
                      +.+||+|+|+|.+.|+..          +..|.. .+    +.+.+.||.++|.+.  .|. |++|++||++||.|+|+|
T Consensus        63 S~tCG~G~q~R~r~C~~~----------~~~C~~~~~~~~~~~~~~~C~~~~Ccp~~~~W~~W~~Ws~CS~tCG~G~q~R  132 (442)
T 1w0r_A           63 SVTCSEGSQLRYRRCVGW----------NGQCSGKVAPGTLEWQLQACEDQQCCPEMGGWSGWGPWEPCSVTCSKGTRTR  132 (442)
T ss_pred             cCccCCcEEEEEEEeecC----------CCCCCCcccCCCCccccccccCCccCCCCCceeeCCCCCCCCCCCCCCceEE
Confidence            778999999999999853          245766 33    457789999997332  585 799999999999999999


Q ss_pred             EEEeeecCCCCCeeecCCCCCCCCCCCCccccC-CCCCcc-cce-eeccccccccccCCCc----EEEEEEeeCCCCc-c
Q psy10169        146 SVKCYREDKDGHREVVPDSACNEEKPESEKPCN-LRPCEG-VDW-LTSEWTGCEEKCGSSL----ETRTAVCATKNGK-I  217 (390)
Q Consensus       146 ~~~C~~~~~~g~~~~v~~~~C~~~~P~~~~~C~-~~~C~~-~~W-~~~~Ws~CS~sCG~G~----~~R~v~C~~~~~~-~  217 (390)
                      .|.|+.....      .+..|.+. +.+.+.|+ ..+|+. ..| .|++|++||++||.|+    |+|.|.|.+..+. .
T Consensus       133 ~r~C~~~~~~------~~~~C~g~-~~~~~~C~~~~~Cp~~~~W~~Ws~WS~CS~tCG~G~~~~~q~R~r~C~~~~~~~~  205 (442)
T 1w0r_A          133 RRACNHPAPK------CGGHCPGQ-AQESEACDTQQVCPTHGAWATWGPWTPCSASCHGGPHEPKETRSRKCSAPEPSQK  205 (442)
T ss_pred             EEEeCCcCCC------CCCCCCCC-cceecCCCCcCccccccccceecccccCCccCCCCCccCceEEEEEecCCCcCcc
Confidence            9999876321      35688764 57899999 889984 348 6699999999999999    9999999986543 2


Q ss_pred             ccCCcccCCCCCccccccCCCCC-CCC--Cccc-cCCcCCCcccCCCeEEEEEEeecCCCCCccccCCCCCCCCCCCCcc
Q psy10169        218 YPESFCLKAKTPELQRECESPPP-CEH--QWYA-TQWSKCSAKCGTGIQTRKVFCGALDGESIKKVDDSKCDPELKYNAT  293 (390)
Q Consensus       218 ~~~~~C~~~~~p~~~~~C~~~~~-C~~--~W~~-s~Ws~CS~tCG~G~q~R~~~C~~~~~~~~~~~~~~~C~~~~~p~~~  293 (390)
                      +++..|.+  .+.+++.|+. .+ ||.  .|.. ++||+||++||.|+|+|.|.|.+....    +++..|.+.  +.++
T Consensus       206 ~~g~~C~g--~~~e~~~C~~-~~~Cp~~g~W~~Ws~WS~CS~tCG~G~q~R~r~C~~~~p~----~gg~~C~g~--~~~~  276 (442)
T 1w0r_A          206 PPGKPCPG--LAYEQRRCTG-LPPCPVAGGWGPWGPVSPCPVTCGLGQTMEQRTCNHPVPQ----HGGPFCAGD--ATRT  276 (442)
T ss_pred             CCCcCCCC--CcceeEeecc-cCCcccccccccccccCCcCCccCCCceeeEEEeCCCCCC----CCCCCCCCC--Ccce
Confidence            46788987  4477899998 55 986  6776 999999999999999999999875543    577899874  4588


Q ss_pred             ccCCCCCCCC--CCccc-cCCccccc------ccC--CCEEEEEecCCCCCCCCCCCcccCCcccccccccccccccccc
Q psy10169        294 KNCTSSQVCK--GHWMS-GPWSKCSK------TYG--GGTMVSRTARDEVIPVEPTGKVAEADEEEECEEEEEEGEETVN  362 (390)
Q Consensus       294 ~~C~~~~~Cp--~~W~~-s~Ws~CS~------tCG--~G~q~R~r~c~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~  362 (390)
                      +.|+...+||  +.|.. ++||.||+      +||  .|+|+|.|.|.....         +.  ..|.+...+.+.|.+
T Consensus       277 ~~C~~~~~Cp~~g~W~~Ws~Ws~Cs~~~~~~~tCg~~~G~q~R~r~C~~~~~---------~g--~~C~g~~~~~~~C~~  345 (442)
T 1w0r_A          277 HICNTAVPCPVDGEWDSWGEWSPCIRRNMKSISCQEIPGQQSRGRTCRGRKF---------DG--HRCAGQQQDIRHCYS  345 (442)
T ss_pred             eeCCCCCCCCCCCEecCCCCcCCCCCCccccCccCCCCCEEEEEEEecCCcC---------CC--cccCCCChhhccccC
Confidence            9999833798  36776 99999999      998  799999999975311         11  135544444444433


Q ss_pred             CC----CCCCccccccccCC------CceeeeecCC
Q psy10169        363 ND----TDEWTVDYVWTQLN------GYSLGLDICP  388 (390)
Q Consensus       363 ~~----~~~ws~ws~W~~~~------~~~~~~~~~~  388 (390)
                      ..    .+.|+.|+.|+.|.      |...+.+.|-
T Consensus       346 ~~~Cp~~~~W~~Ws~Ws~Cs~tCG~~G~~~R~r~C~  381 (442)
T 1w0r_A          346 IQHCPLKGSWSEWSTWGLCMPPCGPNPTRARQRLCT  381 (442)
T ss_pred             CCCCCCCCeecCcCCccccCCCcCCCCeEEEEEECC
Confidence            21    46999999999983      3345555553
>1w0r_A Properdin, factor P; X-RAY scattering, analytical ultracentrifugation, complement, thrombospondin type I repeats, constrained modelling; NMR {Homo sapiens} PDB: 1w0s_A Back     alignment and structure
>3r6b_A Thrombospondin-1; cell adhesion, disulfide bond, EGF-like domain, TSP-1 type 1; 2.40A {Homo sapiens} Back     alignment and structure
>3r6b_A Thrombospondin-1; cell adhesion, disulfide bond, EGF-like domain, TSP-1 type 1; 2.40A {Homo sapiens} Back     alignment and structure
>1lsl_A Thrombospondin 1; TSP-1, TSR, cell adhesion; HET: FUL FUC; 1.90A {Homo sapiens} SCOP: g.60.1.1 g.60.1.1 Back     alignment and structure
>1lsl_A Thrombospondin 1; TSP-1, TSR, cell adhesion; HET: FUL FUC; 1.90A {Homo sapiens} SCOP: g.60.1.1 g.60.1.1 Back     alignment and structure
>3ghm_A A disintegrin and metalloproteinase with thrombos motifs 13; thrombospondin type-1 motif, beta sandwich, hydrolase; HET: NAG FUC BGC; 2.60A {Homo sapiens} PDB: 3ghn_A* 3vn4_A* Back     alignment and structure
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* Back     alignment and structure
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* Back     alignment and structure
>2bbx_A Trap, thrombospondin-related anonymous protein; elongated three-stranded structure, cell adhesion; NMR {Plasmodium falciparum} Back     alignment and structure
>1vex_A F-spondin; TSR, cell adhesion; NMR {Rattus norvegicus} Back     alignment and structure
>1vex_A F-spondin; TSR, cell adhesion; NMR {Rattus norvegicus} Back     alignment and structure
>2bbx_A Trap, thrombospondin-related anonymous protein; elongated three-stranded structure, cell adhesion; NMR {Plasmodium falciparum} Back     alignment and structure
>3vdj_A Circumsporozoite (CS) protein; TSR, ATSR, cell invasion; 1.70A {Plasmodium falciparum} PDB: 3vdk_A 3vdl_A Back     alignment and structure
>1szl_A F-spondin; TSR, cell adhesion; NMR {Rattus norvegicus} Back     alignment and structure
>1szl_A F-spondin; TSR, cell adhesion; NMR {Rattus norvegicus} Back     alignment and structure
>3vdj_A Circumsporozoite (CS) protein; TSR, ATSR, cell invasion; 1.70A {Plasmodium falciparum} PDB: 3vdk_A 3vdl_A Back     alignment and structure
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A Back     alignment and structure
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A Back     alignment and structure
>3ghm_A A disintegrin and metalloproteinase with thrombos motifs 13; thrombospondin type-1 motif, beta sandwich, hydrolase; HET: NAG FUC BGC; 2.60A {Homo sapiens} PDB: 3ghn_A* 3vn4_A* Back     alignment and structure
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Back     alignment and structure
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Back     alignment and structure
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* Back     alignment and structure
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* Back     alignment and structure
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Back     alignment and structure
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 390
d1vmoa_163 b.77.1.1 (A:) Vitelline membrane outer protein-I ( 2e-07
d1vmoa_163 b.77.1.1 (A:) Vitelline membrane outer protein-I ( 4e-04
d1vmoa_163 b.77.1.1 (A:) Vitelline membrane outer protein-I ( 5e-04
>d1vmoa_ b.77.1.1 (A:) Vitelline membrane outer protein-I (VMO-I) {Hen (Gallus gallus) [TaxId: 9031]} Length = 163 Back     information, alignment and structure

class: All beta proteins
fold: beta-Prism I
superfamily: Vitelline membrane outer protein-I (VMO-I)
family: Vitelline membrane outer protein-I (VMO-I)
domain: Vitelline membrane outer protein-I (VMO-I)
species: Hen (Gallus gallus) [TaxId: 9031]

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 17/148 (11%), Positives = 28/148 (18%), Gaps = 21/148 (14%)

Query: 129 SEWTGCDHLCGDGKQKRSVKCYREDKDGHREVVPDSACNEEKPESEKPCNLRPCEGVDWL 188
                C     +G   +                 D+A N  +        +    G    
Sbjct: 21  GIRQFCHSGYANGFALKVEPSQFG--------RDDTALNGIRLRCLDGSVIESLVGKWGT 72

Query: 189 TSEWTGCEEKCGSSLETRTAVCATKNGKIYPESFCLKAKTPELQRECESPPPCEHQWYA- 247
            + +  C      S   R+             +          Q  C           + 
Sbjct: 73  WTSFLVCPTGYLVSFSLRSEKSQGGGDDTAANNI---------QFRCSDEAVLVGDGLSW 123

Query: 248 ---TQWSKCSAKCGTGIQTRKVFCGALD 272
                WSK    CG   +         D
Sbjct: 124 GRFGPWSKRCKICGLQTKVESPQGLRDD 151
>d1vmoa_ b.77.1.1 (A:) Vitelline membrane outer protein-I (VMO-I) {Hen (Gallus gallus) [TaxId: 9031]} Length = 163 Back     information, alignment and structure
>d1vmoa_ b.77.1.1 (A:) Vitelline membrane outer protein-I (VMO-I) {Hen (Gallus gallus) [TaxId: 9031]} Length = 163 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query390
d1vmoa_163 Vitelline membrane outer protein-I (VMO-I) {Hen (G 99.5
d1vmoa_163 Vitelline membrane outer protein-I (VMO-I) {Hen (G 99.49
d1lsla259 Thrombospondin-1 (TSP-1) {Human (Homo sapiens) [Ta 98.77
d1lsla259 Thrombospondin-1 (TSP-1) {Human (Homo sapiens) [Ta 98.75
d1lsla154 Thrombospondin-1 (TSP-1) {Human (Homo sapiens) [Ta 98.52
d1lsla154 Thrombospondin-1 (TSP-1) {Human (Homo sapiens) [Ta 98.52
>d1vmoa_ b.77.1.1 (A:) Vitelline membrane outer protein-I (VMO-I) {Hen (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
class: All beta proteins
fold: beta-Prism I
superfamily: Vitelline membrane outer protein-I (VMO-I)
family: Vitelline membrane outer protein-I (VMO-I)
domain: Vitelline membrane outer protein-I (VMO-I)
species: Hen (Gallus gallus) [TaxId: 9031]

Probab=99.50  E-value=1.8e-15  Score=128.95  Aligned_cols=123  Identities=15%  Similarity=0.204  Sum_probs=80.1

Q ss_pred             cce-eeccccccccccCCCcEEEEEEeeCCCCccccCCcccCCCCCccccccCCCCCCCCCccc-cCCcCCCcccCCCeE
Q psy10169        185 VDW-LTSEWTGCEEKCGSSLETRTAVCATKNGKIYPESFCLKAKTPELQRECESPPPCEHQWYA-TQWSKCSAKCGTGIQ  262 (390)
Q Consensus       185 ~~W-~~~~Ws~CS~sCG~G~~~R~v~C~~~~~~~~~~~~C~~~~~p~~~~~C~~~~~C~~~W~~-s~Ws~CS~tCG~G~q  262 (390)
                      ..| .|++|+.||++||.|+|+|.+.|......  .+..+..  +......|.. ..|. .|.. ++|+.|+++||.|++
T Consensus        15 G~Wg~Ws~Ws~CS~tCg~G~~~R~R~c~~~~~~--~g~~~~~--~~~~~~~~~~-~~~~-~w~~Ws~ws~Cs~tcg~G~~   88 (163)
T d1vmoa_          15 GHWGKWGIRQFCHSGYANGFALKVEPSQFGRDD--TALNGIR--LRCLDGSVIE-SLVG-KWGTWTSFLVCPTGYLVSFS   88 (163)
T ss_dssp             CCCSEECCCEECSSSCEEEEEEEECCSCSSSCC--CCCCEEE--EEETTSCEEC-CSCC-SSSEECCCEECSSSCEEEEE
T ss_pred             CcCCCCCCCCCCCCcCCCCeEEeeccCCCCCCc--cCccccc--cccccCCccc-CCCC-CCCcccccccCCCCccCcee
Confidence            367 78999999999999999999988643210  1111111  1112223333 3343 3433 899999999999999


Q ss_pred             EEEEEeecCCCCCccccCCCCCCCCCCCCccccCCCCCCCC----CCccc-cCCcccccccCCCEEEEE
Q psy10169        263 TRKVFCGALDGESIKKVDDSKCDPELKYNATKNCTSSQVCK----GHWMS-GPWSKCSKTYGGGTMVSR  326 (390)
Q Consensus       263 ~R~~~C~~~~~~~~~~~~~~~C~~~~~p~~~~~C~~~~~Cp----~~W~~-s~Ws~CS~tCG~G~q~R~  326 (390)
                      +|.+.|..          ...|.+.  ..+.+.|+.. +|+    +.|.. ++||.|+++||.++|.|.
T Consensus        89 ~R~r~~~~----------~~~~~g~--~~~~~~C~~~-~c~~~~~~~W~~Ws~ws~cs~~CG~~tr~~~  144 (163)
T d1vmoa_          89 LRSEKSQG----------GGDDTAA--NNIQFRCSDE-AVLVGDGLSWGRFGPWSKRCKICGLQTKVES  144 (163)
T ss_dssp             EEECCCCS----------SCCCCCC--CEEEEEETTS-CEEECSCCCCSEECCCCCCCCEEEEEEEEES
T ss_pred             eeecCCCC----------CCCCCCc--ceeeeccCCC-CCCCCCCCcccCccccCCCccccCCCeEeCC
Confidence            99987753          2334442  3356778776 454    35655 889999999976666654
>d1vmoa_ b.77.1.1 (A:) Vitelline membrane outer protein-I (VMO-I) {Hen (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1lsla2 g.60.1.1 (A:470-528) Thrombospondin-1 (TSP-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsla2 g.60.1.1 (A:470-528) Thrombospondin-1 (TSP-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsla1 g.60.1.1 (A:416-469) Thrombospondin-1 (TSP-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsla1 g.60.1.1 (A:416-469) Thrombospondin-1 (TSP-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure