Psyllid ID: psy1020

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFLYSPYGPQMTYWQ
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHccccccccEEEEEEHEccccccHHHccccccccHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHEEEEccccccEEEcc
Coil and Loop (DISEMBL)
ylissnigEVVSIFLTAAlglpealiPVQLLWVNLVtdglpatalgfnppdldimdkpprkadegliSGWLFFRYLAIGGyvgaatadeglISGWLFFRYLAIGGYVGAATVGAAAWWFlyspygpqmtywq
Flexible Loop (DISEMBL)
YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFLYSPYgpqmtywq
Low Complexity Region (SEG)
YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLaiggyvgaatvgaaaWWFLYSPYGPQMTYWQ
Disordered region (IsUnstruct)
*****NIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDI********DEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFLYSPYGPQMTY**
Disordered Region (DISOPRED)
YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDL************GLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFLYSPYGP******
Disordered Region (DISEMBL)
YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFLYSPYGPQMTYWQ
Disordered Region (DISPRO)
YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFLYSPYGPQMTYW*
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooo
Transmembrane Helix (MEMSAT)
ooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFLYSPYGPQMTYWQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q7PPA5	1018	Calcium-transporting ATPa	yes	N/A	0.810	0.105	0.734	2e-52
P70083	996	Sarcoplasmic/endoplasmic	N/A	N/A	0.810	0.107	0.696	2e-48
Q64518	1038	Sarcoplasmic/endoplasmic	yes	N/A	0.810	0.103	0.674	8e-46
Q9YGL9	1042	Sarcoplasmic/endoplasmic	yes	N/A	0.810	0.102	0.674	4e-45
P18596	1061	Sarcoplasmic/endoplasmic	yes	N/A	0.810	0.100	0.666	7e-44
Q93084	1043	Sarcoplasmic/endoplasmic	yes	N/A	0.810	0.102	0.643	7e-43
Q292Q0	1002	Calcium-transporting ATPa	yes	N/A	0.810	0.106	0.696	1e-42
P22700	1020	Calcium-transporting ATPa	yes	N/A	0.810	0.104	0.681	1e-42
P35316	1003	Calcium-transporting ATPa	N/A	N/A	0.810	0.106	0.689	2e-42
P13585	994	Sarcoplasmic/endoplasmic	no	N/A	0.613	0.081	0.925	2e-40

>sp|Q7PPA5|ATC1_ANOGA Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Anopheles gambiae GN=Ca-P60A PE=2 SV=5

 Score =  203 bits (517), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 97/132 (73%), Positives = 102/132 (77%), Gaps = 25/132 (18%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIM KPPR
Sbjct: 762 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMTKPPR 821

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
           KADEGLISGWLFFRY+AIGGY                         VG ATVG AAWWF+
Sbjct: 822 KADEGLISGWLFFRYMAIGGY-------------------------VGCATVGGAAWWFM 856

Query: 121 YSPYGPQMTYWQ 132
           +S  GPQ++YWQ
Sbjct: 857 FSETGPQLSYWQ 868

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium.
Anopheles gambiae (taxid: 7165)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 8

>sp|P70083|AT2A1_MAKNI Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 OS=Makaira nigricans GN=atp2a1 PE=2 SV=2

 Score =  190 bits (482), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 92/132 (69%), Positives = 96/132 (72%), Gaps = 25/132 (18%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSN+GEVV IFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIM KPPR
Sbjct: 760 YLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMGKPPR 819

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
              E LISGWLFFRY+AIGGY                         VGAATVG AAWWFL
Sbjct: 820 SPKEPLISGWLFFRYMAIGGY-------------------------VGAATVGGAAWWFL 854

Query: 121 YSPYGPQMTYWQ 132
           Y   GP +TY+Q
Sbjct: 855 YDSTGPAVTYYQ 866

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol to the sarcoplasmic reticulum lumen. Contributes to calcium sequestration involved in muscular excitation/contraction.

Makaira nigricans (taxid: 13604)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|Q64518|AT2A3_MOUSE Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Mus musculus GN=Atp2a3 PE=2 SV=3

 Score =  181 bits (460), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 89/132 (67%), Positives = 94/132 (71%), Gaps = 25/132 (18%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSN+GEVV IFLTA LGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIM+KPPR
Sbjct: 763 YLISSNVGEVVCIFLTAILGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMEKPPR 822

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
              E LISGWLFFRYLAI                         G YVG ATV AA WWFL
Sbjct: 823 NPREALISGWLFFRYLAI-------------------------GVYVGLATVAAATWWFL 857

Query: 121 YSPYGPQMTYWQ 132
           Y   GPQ+T++Q
Sbjct: 858 YDTEGPQVTFYQ 869

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of the calcium. Transports calcium ions from the cytosol into the sarcoplasmic/endoplasmic reticulum lumen. Contributes to calcium sequestration involved in muscular excitation/contraction.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|Q9YGL9|AT2A3_CHICK Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Gallus gallus GN=ATP2A3 PE=2 SV=1

 Score =  179 bits (455), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 89/132 (67%), Positives = 93/132 (70%), Gaps = 25/132 (18%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSN+GEVV IFLTA LGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDK PR
Sbjct: 763 YLISSNVGEVVCIFLTAILGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKLPR 822

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
              E LISGWLFFRYLAIG Y                         VG ATVGAA WWFL
Sbjct: 823 NPKEPLISGWLFFRYLAIGVY-------------------------VGLATVGAATWWFL 857

Query: 121 YSPYGPQMTYWQ 132
           Y   GPQ+++ Q
Sbjct: 858 YDAEGPQVSFHQ 869

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of the calcium. Transports calcium ions from the cytosol into the sarcoplasmic/endoplasmic reticulum lumen. Contributes to calcium sequestration involved in muscular excitation/contraction.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|P18596|AT2A3_RAT Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Rattus norvegicus GN=Atp2a3 PE=1 SV=2

 Score =  175 bits (443), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 88/132 (66%), Positives = 92/132 (69%), Gaps = 25/132 (18%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSN+GEVV IFLTA LGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIM+K PR
Sbjct: 763 YLISSNVGEVVCIFLTAILGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMEKLPR 822

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
              E LISGWLFFRYLAI                         G YVG ATV AA WWFL
Sbjct: 823 NPREALISGWLFFRYLAI-------------------------GVYVGLATVAAATWWFL 857

Query: 121 YSPYGPQMTYWQ 132
           Y   GPQ+T+ Q
Sbjct: 858 YDAEGPQVTFHQ 869

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of the calcium. Transports calcium ions from the cytosol into the sarcoplasmic/endoplasmic reticulum lumen. Contributes to calcium sequestration involved in muscular excitation/contraction.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|Q93084|AT2A3_HUMAN Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Homo sapiens GN=ATP2A3 PE=1 SV=2

 Score =  172 bits (435), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 85/132 (64%), Positives = 91/132 (68%), Gaps = 25/132 (18%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSN+GEVV IFLTA LGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIM+K PR
Sbjct: 763 YLISSNVGEVVCIFLTAILGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMEKLPR 822

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
              E LISGWLFFRYLAI                         G YVG ATV AA WWF+
Sbjct: 823 SPREALISGWLFFRYLAI-------------------------GVYVGLATVAAATWWFV 857

Query: 121 YSPYGPQMTYWQ 132
           Y   GP + ++Q
Sbjct: 858 YDAEGPHINFYQ 869

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. Transports calcium ions from the cytosol into the sarcoplasmic/endoplasmic reticulum lumen. Contributes to calcium sequestration involved in muscular excitation/contraction.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|Q292Q0|ATC1_DROPS Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Drosophila pseudoobscura pseudoobscura GN=Ca-P60A PE=3 SV=2

 Score =  171 bits (433), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 92/132 (69%), Positives = 95/132 (71%), Gaps = 25/132 (18%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR
Sbjct: 763 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 822

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
           KADEGLISGWLFFRY+AIG YVGAAT                                F+
Sbjct: 823 KADEGLISGWLFFRYMAIGFYVGAATVGAAAWW-------------------------FI 857

Query: 121 YSPYGPQMTYWQ 132
            S  GP +TYWQ
Sbjct: 858 ASSEGPGLTYWQ 869

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|P22700|ATC1_DROME Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Drosophila melanogaster GN=Ca-P60A PE=1 SV=2

 Score =  171 bits (433), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 90/132 (68%), Positives = 97/132 (73%), Gaps = 25/132 (18%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIM+KPPR
Sbjct: 763 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMEKPPR 822

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
           KADEGLISGWLFFRY+AIG YVGAAT                                F+
Sbjct: 823 KADEGLISGWLFFRYMAIGFYVGAATVGAAAWW-------------------------FV 857

Query: 121 YSPYGPQMTYWQ 132
           +S  GP+++YWQ
Sbjct: 858 FSDEGPKLSYWQ 869

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|P35316|ATC_ARTSF Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Artemia franciscana PE=2 SV=1

 Score =  170 bits (431), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 91/132 (68%), Positives = 99/132 (75%), Gaps = 25/132 (18%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIM+KPPR
Sbjct: 767 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMNKPPR 826

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
           +ADEGLI+GWLFFRY+AIG YVGAAT                           AAA WF+
Sbjct: 827 RADEGLITGWLFFRYMAIGTYVGAATVG-------------------------AAAHWFM 861

Query: 121 YSPYGPQMTYWQ 132
            SP GP + ++Q
Sbjct: 862 MSPTGPGLNFYQ 873

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of the calcium.

Artemia franciscana (taxid: 6661)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|P13585|AT2A1_CHICK Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 OS=Gallus gallus GN=ATP2A1 PE=2 SV=2

 Score =  164 bits (414), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/81 (92%), Positives = 76/81 (93%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSN+GEVV IFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR
Sbjct: 763 YLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 822

Query: 61  KADEGLISGWLFFRYLAIGGY 81
              E LISGWLFFRYLAIGGY
Sbjct: 823 SPKEPLISGWLFFRYLAIGGY 843

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol to the sarcoplasmic reticulum lumen. Contributes to calcium sequestration involved in muscular excitation/contraction.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
256773186	1025	sarco/endoplasmic reticulum calcium ATPa	0.810	0.104	0.787	2e-54
4191598	1000	sarco(endo)plasmic reticulum-type calciu	0.810	0.107	0.772	4e-54
357615523	1025	sarco/endoplasmic reticulum calcium ATPa	0.810	0.104	0.772	2e-53
157113751	998	calcium-transporting atpase sarcoplasmic	0.810	0.107	0.75	1e-52
157113753	999	calcium-transporting atpase sarcoplasmic	0.810	0.107	0.75	1e-52
170066650	995	calcium-transporting atpase sarcoplasmic	0.810	0.107	0.75	3e-52
380022760	1018	PREDICTED: LOW QUALITY PROTEIN: calcium-	0.810	0.105	0.765	4e-52
328785449	1018	PREDICTED: calcium-transporting ATPase s	0.810	0.105	0.765	6e-52
157113755	1019	calcium-transporting atpase sarcoplasmic	0.810	0.105	0.75	6e-52
350403500	1002	PREDICTED: calcium-transporting ATPase s	0.810	0.106	0.75	7e-52

>gi|256773186|ref|NP_001157948.1| sarco/endoplasmic reticulum calcium ATPase [Bombyx mori] gi|255661412|gb|ACU25861.1| sarco/endoplasmic reticulum calcium ATPase [Bombyx mori]

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 104/132 (78%), Positives = 107/132 (81%), Gaps = 25/132 (18%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR
Sbjct: 763 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 822

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
           KADEGLISGWLFFRY+AIGGYV                         GAATVGAA+WWF+
Sbjct: 823 KADEGLISGWLFFRYMAIGGYV-------------------------GAATVGAASWWFM 857

Query: 121 YSPYGPQMTYWQ 132
           YSPYGPQMTYWQ
Sbjct: 858 YSPYGPQMTYWQ 869

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|4191598|gb|AAD09820.1| sarco(endo)plasmic reticulum-type calcium ATPase [Heliothis virescens]

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 102/132 (77%), Positives = 107/132 (81%), Gaps = 25/132 (18%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR
Sbjct: 763 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 822

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
           KADEGLISGWLFFRY+AIGGYV                         GAATVGAA+WWF+
Sbjct: 823 KADEGLISGWLFFRYMAIGGYV-------------------------GAATVGAASWWFM 857

Query: 121 YSPYGPQMTYWQ 132
           YSP+GPQM+YWQ
Sbjct: 858 YSPFGPQMSYWQ 869

Source: Heliothis virescens

Species: Heliothis virescens

Genus: Heliothis

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357615523|gb|EHJ69709.1| sarco/endoplasmic reticulum calcium ATPase [Danaus plexippus]

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 102/132 (77%), Positives = 106/132 (80%), Gaps = 25/132 (18%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR
Sbjct: 763 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 822

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
           KADEGLISGWLFFRY+AIGGY                         VG ATVGAA+WWF+
Sbjct: 823 KADEGLISGWLFFRYMAIGGY-------------------------VGMATVGAASWWFM 857

Query: 121 YSPYGPQMTYWQ 132
           YSP+GPQMTYWQ
Sbjct: 858 YSPFGPQMTYWQ 869

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113751|ref|XP_001652084.1| calcium-transporting atpase sarcoplasmic/endoplasmic reticulum type (calcium pump) [Aedes aegypti] gi|108877602|gb|EAT41827.1| AAEL006582-PA [Aedes aegypti]

 Score =  211 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 99/132 (75%), Positives = 105/132 (79%), Gaps = 25/132 (18%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIM+KPPR
Sbjct: 762 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMEKPPR 821

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
           KADEGLISGWLFFRY+AIGGY                         VGAATVG AAWWF+
Sbjct: 822 KADEGLISGWLFFRYMAIGGY-------------------------VGAATVGGAAWWFM 856

Query: 121 YSPYGPQMTYWQ 132
           +S +GPQ+TYWQ
Sbjct: 857 FSDHGPQLTYWQ 868

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113753|ref|XP_001652085.1| calcium-transporting atpase sarcoplasmic/endoplasmic reticulum type (calcium pump) [Aedes aegypti] gi|108877603|gb|EAT41828.1| AAEL006582-PB [Aedes aegypti]

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 99/132 (75%), Positives = 105/132 (79%), Gaps = 25/132 (18%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIM+KPPR
Sbjct: 762 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMEKPPR 821

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
           KADEGLISGWLFFRY+AIGGY                         VGAATVG AAWWF+
Sbjct: 822 KADEGLISGWLFFRYMAIGGY-------------------------VGAATVGGAAWWFM 856

Query: 121 YSPYGPQMTYWQ 132
           +S +GPQ+TYWQ
Sbjct: 857 FSDHGPQLTYWQ 868

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170066650|ref|XP_001868188.1| calcium-transporting atpase sarcoplasmic/endoplasmic reticulum type [Culex quinquefasciatus] gi|167862914|gb|EDS26297.1| calcium-transporting atpase sarcoplasmic/endoplasmic reticulum type [Culex quinquefasciatus]

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 99/132 (75%), Positives = 103/132 (78%), Gaps = 25/132 (18%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR
Sbjct: 756 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 815

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
           +ADEGLISGWLFFRY+AIGGY                         VGAATVG AAWWF+
Sbjct: 816 RADEGLISGWLFFRYMAIGGY-------------------------VGAATVGGAAWWFM 850

Query: 121 YSPYGPQMTYWQ 132
           Y   GPQ+TYWQ
Sbjct: 851 YHDQGPQLTYWQ 862

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022760|ref|XP_003695205.1| PREDICTED: LOW QUALITY PROTEIN: calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type-like [Apis florea]

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 101/132 (76%), Positives = 103/132 (78%), Gaps = 25/132 (18%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIM KPPR
Sbjct: 763 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMSKPPR 822

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
           KADE LISGWLFFRYLAIGGY                         VGAATVG+AAWWFL
Sbjct: 823 KADESLISGWLFFRYLAIGGY-------------------------VGAATVGSAAWWFL 857

Query: 121 YSPYGPQMTYWQ 132
           YSP GPQM Y+Q
Sbjct: 858 YSPNGPQMNYYQ 869

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785449|ref|XP_393851.3| PREDICTED: calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type isoform 1 [Apis mellifera]

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 101/132 (76%), Positives = 103/132 (78%), Gaps = 25/132 (18%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIM KPPR
Sbjct: 763 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMSKPPR 822

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
           KADE LISGWLFFRYLAIGGY                         VGAATVG+AAWWFL
Sbjct: 823 KADESLISGWLFFRYLAIGGY-------------------------VGAATVGSAAWWFL 857

Query: 121 YSPYGPQMTYWQ 132
           YSP GPQM Y+Q
Sbjct: 858 YSPNGPQMNYYQ 869

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113755|ref|XP_001652086.1| calcium-transporting atpase sarcoplasmic/endoplasmic reticulum type (calcium pump) [Aedes aegypti] gi|108877604|gb|EAT41829.1| AAEL006582-PC [Aedes aegypti]

 Score =  208 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 99/132 (75%), Positives = 105/132 (79%), Gaps = 25/132 (18%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIM+KPPR
Sbjct: 762 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMEKPPR 821

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
           KADEGLISGWLFFRY+AIGGY                         VGAATVG AAWWF+
Sbjct: 822 KADEGLISGWLFFRYMAIGGY-------------------------VGAATVGGAAWWFM 856

Query: 121 YSPYGPQMTYWQ 132
           +S +GPQ+TYWQ
Sbjct: 857 FSDHGPQLTYWQ 868

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403500|ref|XP_003486819.1| PREDICTED: calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type-like [Bombus impatiens]

 Score =  208 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 99/132 (75%), Positives = 105/132 (79%), Gaps = 25/132 (18%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIM KPPR
Sbjct: 763 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMSKPPR 822

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
           KADE LISGWLFFRY+AIGGY                         VGAATVG+AAWWF+
Sbjct: 823 KADESLISGWLFFRYMAIGGY-------------------------VGAATVGSAAWWFM 857

Query: 121 YSPYGPQMTYWQ 132
           YSP+GPQM+Y+Q
Sbjct: 858 YSPHGPQMSYYQ 869

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
FB|FBgn0263006	1020	Ca-P60A "Calcium ATPase at 60A	0.727	0.094	0.877	5.9e-40
UNIPROTKB|Q292Q0	1002	Ca-P60A "Calcium-transporting	0.704	0.092	0.905	7.3e-40
UNIPROTKB|P13585	994	ATP2A1 "Sarcoplasmic/endoplasm	0.727	0.096	0.836	4.8e-38
UNIPROTKB|Q4R8B2	795	Q4R8B2 "Testis cDNA clone: Qts	0.727	0.120	0.816	8.9e-38
UNIPROTKB|Q9DDB8	994	atp2A1 "Ca2+-ATPase" [Rana syl	0.727	0.096	0.826	1e-37
UNIPROTKB|B3KY17	869	ATP2A1 "cDNA FLJ46599 fis, clo	0.727	0.110	0.816	1.2e-37
UNIPROTKB|F1RFH9	993	ATP2A1 "Uncharacterized protei	0.727	0.096	0.816	1.6e-37
UNIPROTKB|J9P9P2	993	ATP2A1 "Uncharacterized protei	0.727	0.096	0.816	1.6e-37
UNIPROTKB|Q92105	994	ATP2A1 "Sarcoplasmic/endoplasm	0.727	0.096	0.816	1.7e-37
UNIPROTKB|Q9DDB9	994	atp2A1 "Ca2+-ATPase 1" [Rana c	0.727	0.096	0.816	1.7e-37

FB|FBgn0263006 Ca-P60A "Calcium ATPase at 60A" [Drosophila melanogaster (taxid:7227)]

 Score = 436 (158.5 bits), Expect = 5.9e-40, P = 5.9e-40
 Identities = 86/98 (87%), Positives = 89/98 (90%)

Query:     1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
             YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIM+KPPR
Sbjct:   763 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMEKPPR 822

Query:    61 KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFF 98
             KADEGLISGWLFFRY+AIG YVGAAT   G  + W  F
Sbjct:   823 KADEGLISGWLFFRYMAIGFYVGAATV--GAAAWWFVF 858

GO:0005783 "endoplasmic reticulum" evidence=ISS;IDA

GO:0005388 "calcium-transporting ATPase activity" evidence=ISS;NAS

GO:0005789 "endoplasmic reticulum membrane" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;NAS

GO:0016529 "sarcoplasmic reticulum" evidence=NAS

GO:0006816 "calcium ion transport" evidence=IEA;NAS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051282 "regulation of sequestering of calcium ion" evidence=IMP

GO:0007274 "neuromuscular synaptic transmission" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005811 "lipid particle" evidence=IDA

GO:0006874 "cellular calcium ion homeostasis" evidence=IMP

GO:0030322 "stabilization of membrane potential" evidence=IGI

GO:0007629 "flight behavior" evidence=IGI

UNIPROTKB|Q292Q0 Ca-P60A "Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 435 (158.2 bits), Expect = 7.3e-40, P = 7.3e-40
 Identities = 86/95 (90%), Positives = 88/95 (92%)

Query:     1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
             YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR
Sbjct:   763 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 822

Query:    61 KADEGLISGWLFFRYLAIGGYVGAATADEGLISGW 95
             KADEGLISGWLFFRY+AIG YVGAAT   G  + W
Sbjct:   823 KADEGLISGWLFFRYMAIGFYVGAATV--GAAAWW 855

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0016529 "sarcoplasmic reticulum" evidence=ISS

UNIPROTKB|P13585 ATP2A1 "Sarcoplasmic/endoplasmic reticulum calcium ATPase 1" [Gallus gallus (taxid:9031)]

 Score = 418 (152.2 bits), Expect = 4.8e-38, P = 4.8e-38
 Identities = 82/98 (83%), Positives = 85/98 (86%)

Query:     1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
             YLISSN+GEVV IFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR
Sbjct:   763 YLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 822

Query:    61 KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFF 98
                E LISGWLFFRYLAIGGYVGAAT   G  + W  +
Sbjct:   823 SPKEPLISGWLFFRYLAIGGYVGAATV--GAAAWWFLY 858

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0045988 "negative regulation of striated muscle contraction" evidence=ISS

GO:0016529 "sarcoplasmic reticulum" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0006942 "regulation of striated muscle contraction" evidence=ISS

GO:0005388 "calcium-transporting ATPase activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0006816 "calcium ion transport" evidence=ISS

GO:0033017 "sarcoplasmic reticulum membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0031673 "H zone" evidence=ISS

GO:0031674 "I band" evidence=ISS

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0031448 "positive regulation of fast-twitch skeletal muscle fiber contraction" evidence=ISS

UNIPROTKB|Q4R8B2 Q4R8B2 "Testis cDNA clone: QtsA-12913, similar to human ATPase, Ca++ transporting, cardiac muscle, fast twitch 1(ATP2A1), transcript variant a," [Macaca fascicularis (taxid:9541)]

 Score = 413 (150.4 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 80/98 (81%), Positives = 85/98 (86%)

Query:     1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
             YLISSN+GEVV IFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMD+PPR
Sbjct:   557 YLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPR 616

Query:    61 KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFF 98
                E LISGWLFFRY+AIGGYVGAAT   G  + W  +
Sbjct:   617 SPKEPLISGWLFFRYMAIGGYVGAATV--GAAAWWFMY 652

GO:0005388 "calcium-transporting ATPase activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISS

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0006816 "calcium ion transport" evidence=ISS

GO:0006942 "regulation of striated muscle contraction" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016529 "sarcoplasmic reticulum" evidence=ISS

GO:0031448 "positive regulation of fast-twitch skeletal muscle fiber contraction" evidence=ISS

GO:0031673 "H zone" evidence=ISS

GO:0031674 "I band" evidence=ISS

GO:0045988 "negative regulation of striated muscle contraction" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

UNIPROTKB|Q9DDB8 atp2A1 "Ca2+-ATPase" [Rana sylvatica (taxid:45438)]

 Score = 415 (151.1 bits), Expect = 1.0e-37, P = 1.0e-37
 Identities = 81/98 (82%), Positives = 85/98 (86%)

Query:     1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
             YLISSN+GEVV IFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMD+PPR
Sbjct:   763 YLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPR 822

Query:    61 KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFF 98
                E LISGWLFFRYLAIGGYVGAAT   G  + W  +
Sbjct:   823 SPKEPLISGWLFFRYLAIGGYVGAATV--GAAAWWFMY 858

GO:0005388 "calcium-transporting ATPase activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISS

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0006816 "calcium ion transport" evidence=ISS

GO:0006942 "regulation of striated muscle contraction" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016529 "sarcoplasmic reticulum" evidence=ISS

GO:0031448 "positive regulation of fast-twitch skeletal muscle fiber contraction" evidence=ISS

GO:0031673 "H zone" evidence=ISS

GO:0031674 "I band" evidence=ISS

GO:0045988 "negative regulation of striated muscle contraction" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

UNIPROTKB|B3KY17 ATP2A1 "cDNA FLJ46599 fis, clone THYMU3047115, highly similar to Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 (EC 3.6.3.8)" [Homo sapiens (taxid:9606)]

 Score = 413 (150.4 bits), Expect = 1.2e-37, P = 1.2e-37
 Identities = 80/98 (81%), Positives = 85/98 (86%)

Query:     1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
             YLISSN+GEVV IFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMD+PPR
Sbjct:   638 YLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPR 697

Query:    61 KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFF 98
                E LISGWLFFRY+AIGGYVGAAT   G  + W  +
Sbjct:   698 SPKEPLISGWLFFRYMAIGGYVGAATV--GAAAWWFLY 733

GO:0005388 "calcium-transporting ATPase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1RFH9 ATP2A1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 413 (150.4 bits), Expect = 1.6e-37, P = 1.6e-37
 Identities = 80/98 (81%), Positives = 85/98 (86%)

Query:     1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
             YLISSN+GEVV IFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMD+PPR
Sbjct:   762 YLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPR 821

Query:    61 KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFF 98
                E LISGWLFFRY+AIGGYVGAAT   G  + W  +
Sbjct:   822 SPKEPLISGWLFFRYMAIGGYVGAATV--GAAAWWFLY 857

GO:0090076 "relaxation of skeletal muscle" evidence=IEA

GO:0070509 "calcium ion import" evidence=IEA

GO:0070059 "intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress" evidence=IEA

GO:0051659 "maintenance of mitochondrion location" evidence=IEA

GO:0051561 "elevation of mitochondrial calcium ion concentration" evidence=IEA

GO:0045988 "negative regulation of striated muscle contraction" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0032471 "reduction of endoplasmic reticulum calcium ion concentration" evidence=IEA

GO:0032470 "elevation of endoplasmic reticulum calcium ion concentration" evidence=IEA

GO:0031674 "I band" evidence=IEA

GO:0031673 "H zone" evidence=IEA

GO:0031448 "positive regulation of fast-twitch skeletal muscle fiber contraction" evidence=IEA

GO:0008637 "apoptotic mitochondrial changes" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005388 "calcium-transporting ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|J9P9P2 ATP2A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 413 (150.4 bits), Expect = 1.6e-37, P = 1.6e-37
 Identities = 80/98 (81%), Positives = 85/98 (86%)

Query:     1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
             YLISSN+GEVV IFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMD+PPR
Sbjct:   762 YLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPR 821

Query:    61 KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFF 98
                E LISGWLFFRY+AIGGYVGAAT   G  + W  +
Sbjct:   822 SPKEPLISGWLFFRYMAIGGYVGAATV--GAAAWWFMY 857

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005388 "calcium-transporting ATPase activity" evidence=IEA

UNIPROTKB|Q92105 ATP2A1 "Sarcoplasmic/endoplasmic reticulum calcium ATPase 1" [Pelophylax esculentus (taxid:8401)]

 Score = 413 (150.4 bits), Expect = 1.7e-37, P = 1.7e-37
 Identities = 80/98 (81%), Positives = 85/98 (86%)

Query:     1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
             YLISSN+GEVV IFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMD+PPR
Sbjct:   763 YLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPR 822

Query:    61 KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFF 98
                E LISGWLFFRY+AIGGYVGAAT   G  + W  +
Sbjct:   823 SPKEPLISGWLFFRYMAIGGYVGAATV--GAAAWWFMY 858

GO:0005388 "calcium-transporting ATPase activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISS

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0006816 "calcium ion transport" evidence=ISS

GO:0006942 "regulation of striated muscle contraction" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016529 "sarcoplasmic reticulum" evidence=ISS

GO:0031448 "positive regulation of fast-twitch skeletal muscle fiber contraction" evidence=ISS

GO:0031673 "H zone" evidence=ISS

GO:0031674 "I band" evidence=ISS

GO:0045988 "negative regulation of striated muscle contraction" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

UNIPROTKB|Q9DDB9 atp2A1 "Ca2+-ATPase 1" [Rana clamitans (taxid:145282)]

 Score = 413 (150.4 bits), Expect = 1.7e-37, P = 1.7e-37
 Identities = 80/98 (81%), Positives = 85/98 (86%)

Query:     1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
             YLISSN+GEVV IFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMD+PPR
Sbjct:   763 YLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPR 822

Query:    61 KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFF 98
                E LISGWLFFRY+AIGGYVGAAT   G  + W  +
Sbjct:   823 SPKEPLISGWLFFRYMAIGGYVGAATV--GAAAWWFMY 858

GO:0005388 "calcium-transporting ATPase activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISS

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0006816 "calcium ion transport" evidence=ISS

GO:0006942 "regulation of striated muscle contraction" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016529 "sarcoplasmic reticulum" evidence=ISS

GO:0031448 "positive regulation of fast-twitch skeletal muscle fiber contraction" evidence=ISS

GO:0031673 "H zone" evidence=ISS

GO:0031674 "I band" evidence=ISS

GO:0045988 "negative regulation of striated muscle contraction" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P04191	AT2A1_RABIT	3, ., 6, ., 3, ., 8	0.9012	0.6136	0.0809	no	N/A
Q9YGL9	AT2A3_CHICK	3, ., 6, ., 3, ., 8	0.6742	0.8106	0.1026	yes	N/A
Q93084	AT2A3_HUMAN	3, ., 6, ., 3, ., 8	0.6439	0.8106	0.1025	yes	N/A
P18596	AT2A3_RAT	3, ., 6, ., 3, ., 8	0.6666	0.8106	0.1008	yes	N/A
Q9XES1	ECA4_ARATH	3, ., 6, ., 3, ., 8	0.7674	0.6515	0.0810	yes	N/A
P13585	AT2A1_CHICK	3, ., 6, ., 3, ., 8	0.9259	0.6136	0.0814	no	N/A
Q292Q0	ATC1_DROPS	3, ., 6, ., 3, ., 8	0.6969	0.8106	0.1067	yes	N/A
Q92105	AT2A1_RANES	3, ., 6, ., 3, ., 8	0.9012	0.6136	0.0814	N/A	N/A
Q0VCY0	AT2A1_BOVIN	3, ., 6, ., 3, ., 8	0.9012	0.6136	0.0815	no	N/A
Q64518	AT2A3_MOUSE	3, ., 6, ., 3, ., 8	0.6742	0.8106	0.1030	yes	N/A
Q64578	AT2A1_RAT	3, ., 6, ., 3, ., 8	0.9012	0.6136	0.0814	no	N/A
P92939	ECA1_ARATH	3, ., 6, ., 3, ., 8	0.7674	0.6515	0.0810	yes	N/A
Q7PPA5	ATC1_ANOGA	3, ., 6, ., 3, ., 8	0.7348	0.8106	0.1051	yes	N/A
Q8R429	AT2A1_MOUSE	3, ., 6, ., 3, ., 8	0.9012	0.6136	0.0814	no	N/A
P22700	ATC1_DROME	3, ., 6, ., 3, ., 8	0.6818	0.8106	0.1049	yes	N/A
O14983	AT2A1_HUMAN	3, ., 6, ., 3, ., 8	0.9012	0.6136	0.0809	no	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	132
TIGR01116	917	TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic retic	6e-55
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	4e-24
pfam00689	175	pfam00689, Cation_ATPase_C, Cation transporting AT	9e-19
TIGR01522	884	TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-	2e-13
TIGR01517	944	TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-	3e-10
TIGR01106	997	TIGR01106, ATPase-IIC_X-K, sodium or proton efflux	9e-08
TIGR01523	1053	TIGR01523, ATPase-IID_K-Na, potassium and/or sodiu	3e-07

>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum calcium-translocating P-type ATPase

 Score =  183 bits (466), Expect = 6e-55
 Identities = 77/129 (59%), Positives = 85/129 (65%), Gaps = 25/129 (19%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           Y+ISSNIGEVV IFLTAALG+PE LIPVQLLWVNLVTDGLPATALGFNPPD DIM KPPR
Sbjct: 698 YMISSNIGEVVCIFLTAALGIPEGLIPVQLLWVNLVTDGLPATALGFNPPDKDIMWKPPR 757

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
           +                          DE LI+GWLFFRYL +G YVG ATVG   WW+L
Sbjct: 758 R-------------------------PDEPLITGWLFFRYLVVGVYVGLATVGGFVWWYL 792

Query: 121 YSPYGPQMT 129
            + +     
Sbjct: 793 LTHFTGCDE 801

This model describes the P-type ATPase responsible for translocating calcium ions across the endoplasmic reticulum membrane of eukaryotes , and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates. These pumps transfer Ca2+ from the cytoplasm to the lumen of the endoplasmic reticulum. In humans and mice, at least, there are multiple isoforms of the SERCA pump with overlapping but not redundant functions. Defects in SERCA isoforms are associated with diseases in humans. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the latter of which is modelled by TIGR01522 [Transport and binding proteins, Cations and iron carrying compounds]. Length = 917

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 95.9 bits (239), Expect = 4e-24
 Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 8/126 (6%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEA-LIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPP 59
           YL+S N+GEV+++ + +   L    L P+QLLW+NL+TD LPA ALG   P+ D+M +PP
Sbjct: 707 YLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKRPP 766

Query: 60  RKADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAA--- 116
           R  +EGL +  +F+R++ I G + A       I  +L +    I   +G     A     
Sbjct: 767 RGPEEGLFNRKIFWRFILIIGLLSAILF----ILTFLLYLLGFIANTLGLDLFQALLQTT 822

Query: 117 WWFLYS 122
            + +  
Sbjct: 823 AFTVLV 828

Length = 917

>gnl|CDD|216063 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus

 Score = 76.9 bits (190), Expect = 9e-19
 Identities = 40/99 (40%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 22  PEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGGY 81
           P  L P+Q+LW+NLVTDGLPA ALGF PP+ D+M +PPRK  E L S  L  R L  G  
Sbjct: 1   PLPLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKPKEPLFSRKLLRRILLQGLL 60

Query: 82  VGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
           +   T         L   +L + G+  + +  A    F 
Sbjct: 61  IAIVT---------LLVFFLGLLGFGISESGLAQTMAFN 90

Members of this families are involved in Na+/K+, H+/K+, Ca++ and Mg++ transport. This family represents 5 transmembrane helices. Length = 175

>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating P-type ATPase

 Score = 65.2 bits (159), Expect = 2e-13
 Identities = 26/74 (35%), Positives = 45/74 (60%)

Query: 3   ISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKA 62
           +S+++  +  I L   +G P  L  +Q+LW+N++ DG PA +LG  P D D+M KPPR  
Sbjct: 688 LSTSVAALSLIALATLMGFPNPLNAMQILWINILMDGPPAQSLGVEPVDKDVMRKPPRPR 747

Query: 63  DEGLISGWLFFRYL 76
           ++ +++  L  + L
Sbjct: 748 NDKILTKDLIKKIL 761

This model describes the P-type ATPase responsible for translocating calcium ions across the golgi membrane of fungi and animals , and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116. Length = 884

>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating P-type ATPase

 Score = 55.9 bits (135), Expect = 3e-10
 Identities = 27/76 (35%), Positives = 39/76 (51%)

Query: 6   NIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEG 65
           N+  V+  F+ + +     L  VQLLWVNL+ D L A AL   PP   ++D+ P   +  
Sbjct: 745 NVVAVILTFVGSCISSTSPLTAVQLLWVNLIMDTLAALALATEPPTEALLDRKPIGRNAP 804

Query: 66  LISGWLFFRYLAIGGY 81
           LIS  ++   L   GY
Sbjct: 805 LISRSMWKNILGQAGY 820

This model describes the P-type ATPase responsible for translocating calcium ions across the plasma membrane of eukaryotes , out of the cell. In some organisms, this type of pump may also be found in vacuolar membranes. In humans and mice, at least, there are multiple isoforms of the PMCA pump with overlapping but not redundant functions. Accordingly, there are no human diseases linked to PMCA defects, although alterations of PMCA function do elicit physiological effects. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1) which are modelled by TIGR01116 and TIGR01522. This model is well separated from those. Length = 944

>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

 Score = 49.0 bits (117), Expect = 9e-08
 Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 23/144 (15%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           Y ++SNI E+    +     +P  L  + +L ++L TD +PA +L +   + DIM + PR
Sbjct: 752 YTLTSNIPEITPFLIFIIANIPLPLGTITILCIDLGTDMVPAISLAYEKAESDIMKRQPR 811

Query: 61  K------ADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGA 114
                   +E LIS      Y    G +G   A  G  +   +F  LA  G++    VG 
Sbjct: 812 NPKTDKLVNERLIS----MAY----GQIGMIQALGGFFT---YFVILAENGFLPLHLVGL 860

Query: 115 AAWWF------LYSPYGPQMTYWQ 132
              W       L   YG + TY Q
Sbjct: 861 RVQWDDRWINDLEDSYGQEWTYEQ 884

This model describes the P-type ATPases responsible for the exchange of either protons or sodium ions for potassium ions across the plasma membranes of eukaryotes. Unlike most other P-type ATPases, members of this subfamily require a beta subunit for activity. This model encompasses eukaryotes and consists of two functional types, a Na/K antiporter found widely distributed in eukaryotes and a H/K antiporter found only in vertebrates. The Na+ or H+/K+ antiporter P-type ATPases have been characterized as Type IIC based on a published phylogenetic analysis. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps [Energy metabolism, ATP-proton motive force interconversion]. Length = 997

>gnl|CDD|130586 TIGR01523, ATPase-IID_K-Na, potassium and/or sodium efflux P-type ATPase, fungal-type

 Score = 47.3 bits (112), Expect = 3e-07
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 1   YLISSNIGEVVSIFLTAALGLPE-------ALIPVQLLWVNLVTDGLPATALGFNPPDLD 53
           +L++ N+ E   I L   L   +        L PV++LW  ++T   PA  LG      D
Sbjct: 814 HLLAENVAEA--ILLIIGLAFRDENGKSVFPLSPVEILWCIMITSCFPAMGLGLEKAAPD 871

Query: 54  IMDKPPRKADEGLISGWLFFRYLAIGGYVGAAT 86
           +MD+ P   + G+    L     A G ++G + 
Sbjct: 872 LMDRLPHDNEVGIFQKELIIDMFAYGFFLGGSC 904

Initially described as a calcium efflux ATPase , more recent work has shown that the S. pombe CTA3 gene is in fact a potassium ion efflux pump. This model describes the clade of fungal P-type ATPases responsible for potassium and sodium efflux. The degree to which these pumps show preference for sodium or potassium varies. This group of ATPases has been classified by phylogentic analysis as type IID. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump. Length = 1053

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
KOG0202|consensus	972		99.93
KOG0203|consensus	1019		99.91
PF00689	182	Cation_ATPase_C: Cation transporting ATPase, C-ter	99.83
TIGR01523	1053	ATPase-IID_K-Na potassium and/or sodium efflux P-t	99.73
TIGR01522	884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	99.69
KOG0204|consensus	1034		99.65
TIGR01116	917	ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium	99.64
TIGR01106	997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	99.62
TIGR01517	941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	99.59
PRK15122	903	magnesium-transporting ATPase; Provisional	99.59
COG0474	917	MgtA Cation transport ATPase [Inorganic ion transp	99.51
PRK10517	902	magnesium-transporting ATPase MgtA; Provisional	99.5
TIGR01524	867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	99.48
TIGR01657	1054	P-ATPase-V P-type ATPase of unknown pump specifici	98.93
TIGR01647	755	ATPase-IIIA_H plasma-membrane proton-efflux P-type	98.84
TIGR01652	1057	ATPase-Plipid phospholipid-translocating P-type AT	98.3

>KOG0202|consensus

Probab=99.93  E-value=5.2e-27  Score=209.89  Aligned_cols=105  Identities=67%  Similarity=1.181  Sum_probs=100.7

Q ss_pred             CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy1020           1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGG   80 (132)
Q Consensus         1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~   80 (132)
                      |+||+|++|+..++++.++|.|.||.|+|+||+|++||++||.+||+||+++|+|+||||+++++++++.++.       
T Consensus       746 ~~lSsnVgev~~I~l~aa~~~p~pL~pvQiLWiNlvtDG~PA~aLG~ep~D~DiM~kpPR~~~~~iit~~l~~-------  818 (972)
T KOG0202|consen  746 YLLSSNVGEVVLIFLTAAFGIPEPLIPVQILWINLVTDGPPATALGFEPVDPDIMKKPPRDSKDGIITGWLIF-------  818 (972)
T ss_pred             HHHhhhHHHHHHHHHHHHhCCCCcccchhhheeeeeccCCchhhcCCCCCChhHHhCCCCCCCCCeeeHHHHH-------
Confidence            7899999999999999999999999999999999999999999999999999999999999999999998776       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhheeeeecCCCCcccccC
Q psy1020          81 YVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFLYSPYGPQMTYWQ  132 (132)
Q Consensus        81 i~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (132)
                                        ||+.+|.|++..|+++|.+|+.+.  |+..||+|
T Consensus       819 ------------------r~l~~g~~vg~~Tv~~f~~~~~~~--~~~vt~~~  850 (972)
T KOG0202|consen  819 ------------------RYLAIGIIVGVATVGVFVWWMYGA--DGKVTYRQ  850 (972)
T ss_pred             ------------------HHHHhheeeeeeEhHhhhHHHhcC--CCCcChhh
Confidence                              999999999999999999999987  88888876

>KOG0203|consensus

Probab=99.91  E-value=6.9e-25  Score=196.37  Aligned_cols=125  Identities=34%  Similarity=0.539  Sum_probs=117.7

Q ss_pred             CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCC-CCCCCCcHHHH-HHHHHH
Q psy1020           1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRK-ADEGLISGWLF-FRYLAI   78 (132)
Q Consensus         1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~-~~~~l~~~~l~-~~i~~~   78 (132)
                      |.|++|++|+.++++..++|+|+|+++++||+|++.||..||++|++|+||+|+|+|+||+ ++++++|++++ ..++..
T Consensus       774 YTLTsNipEI~PfL~fi~~giPLplgtitIL~IDLgTDmvPAiSLAYE~aEsDIM~r~PR~p~~D~LVN~rLi~~aY~qI  853 (1019)
T KOG0203|consen  774 YTLTSNIPEITPFLLFILFGIPLPLGTVTILCIDLGTDIVPAISLAYEKAESDIMLRPPRNPKDDKLVNKRLISYSYLQI  853 (1019)
T ss_pred             HHHHhcchhHhHHHHHHHhCCCcccchhhhhhhHhhcccchhhhHhccCchhhHHhcCCCCCcccccccchhHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999999999999999 58999999998 589999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhheeeee------cCCCCcccccC
Q psy1020          79 GGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFLY------SPYGPQMTYWQ  132 (132)
Q Consensus        79 G~i~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  132 (132)
                      |.++++++|+       ++|..++..++..-..++...-|.+.      ++|||||||||
T Consensus       854 G~iqa~agF~-------tYFvima~nGf~P~~L~~ir~~W~d~~~~Dl~DsyGQeWtyeq  906 (1019)
T KOG0203|consen  854 GMIQALAGFF-------TYFVIMAENGFLPRTLVGLREDWDDDGVNDLTDSYGQEWTYEQ  906 (1019)
T ss_pred             HHHHHHHHHH-------HHHHHHHHcCCChHHHHhhHHhhhhhhhhhhhhhccccccHHH
Confidence            9999998775       77888899999999999999999876      89999999998

>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.83  E-value=1.2e-20  Score=141.24  Aligned_cols=69  Identities=51%  Similarity=0.783  Sum_probs=58.7

Q ss_pred             CCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q psy1020          22 PEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGGYVGAATADEG   90 (132)
Q Consensus        22 p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~i~a~~~~~~~   90 (132)
                      |.|++|+|+||+|+++|.+|++++++||+|+|+|+||||+++++++|++++.+++.+|.++++.++...
T Consensus         1 P~Pl~~~qiL~inli~d~~~a~al~~e~~~~~im~r~Pr~~~~~l~~~~~~~~i~~~g~~~~~~~~~~f   69 (182)
T PF00689_consen    1 PLPLTPIQILWINLITDLLPALALGFEPPDPDIMKRPPRDPNEPLINKRLLRRILIQGLIMAAACFFAF   69 (182)
T ss_dssp             S-SS-HHHHHHHHHTTTHHHHHHGGGSS-STTGGGS---TTTS-SSSHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHhcCcchhhhhhccccccchhhccHHhHhHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999999999999999999999999877533

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type

Probab=99.73  E-value=9e-18  Score=155.58  Aligned_cols=90  Identities=27%  Similarity=0.513  Sum_probs=83.3

Q ss_pred             CcccccHHHHHHHHHHHHh----cC-CCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHH
Q psy1020           1 YLISSNIGEVVSIFLTAAL----GL-PEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRY   75 (132)
Q Consensus         1 ylLs~nv~eil~~l~~~l~----g~-p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i   75 (132)
                      |+++.|++++++++++.++    |. |.||+|+|+||+|+++|.+|+++|++||+|+|+|+||||++++++++++++.++
T Consensus       814 y~l~~ni~~i~~~~~~~~~~~~~g~~~~Pl~~~qiL~inli~d~~palaL~~e~~~~~~m~~~Pr~~~~~l~~~~~~~~~  893 (1053)
T TIGR01523       814 HLLAENVAEAILLIIGLAFRDENGKSVFPLSPVEILWCIMITSCFPAMGLGLEKAAPDLMDRLPHDNEVGIFQKELIIDM  893 (1053)
T ss_pred             HHHHHhHHHHHHHHHHHHHhcccCCCcCchHHHHHHHHHHHHHHHHHHhhccCCCChhHHhcCCCCCCccccCHHHHHHH
Confidence            6789999999999999998    44 589999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy1020          76 LAIGGYVGAATADEG   90 (132)
Q Consensus        76 ~~~G~i~a~~~~~~~   90 (132)
                      +..|+++++.++...
T Consensus       894 ~~~g~~~~~~~l~~~  908 (1053)
T TIGR01523       894 FAYGFFLGGSCLASF  908 (1053)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999888876543

The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase

Probab=99.69  E-value=6.7e-17  Score=147.32  Aligned_cols=88  Identities=31%  Similarity=0.583  Sum_probs=82.9

Q ss_pred             CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy1020           1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGG   80 (132)
Q Consensus         1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~   80 (132)
                      |.++.|++++..++++.+++.|.|++|+|+||+|+++|.+|+++|++||+++++|+||||++++++++++++.+++.+|+
T Consensus       686 ~~l~~ni~~~~~~~~~~~~~~~~pl~~~qiL~inl~~d~~~a~~l~~e~~~~~~m~~~P~~~~~~~~~~~~~~~~~~~g~  765 (884)
T TIGR01522       686 FQLSTSVAALSLIALATLMGFPNPLNAMQILWINILMDGPPAQSLGVEPVDKDVMRKPPRPRNDKILTKDLIKKILVSAI  765 (884)
T ss_pred             HHhhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhhHHHHhccCCCChhHhhCCCCCCCCCccCHHHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1020          81 YVGAATAD   88 (132)
Q Consensus        81 i~a~~~~~   88 (132)
                      ++++.++.
T Consensus       766 ~~~~~~~~  773 (884)
T TIGR01522       766 IIVVGTLF  773 (884)
T ss_pred             HHHHHHHH
Confidence            88776554

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.

>KOG0204|consensus

Probab=99.65  E-value=1.1e-16  Score=144.39  Aligned_cols=87  Identities=29%  Similarity=0.416  Sum_probs=80.8

Q ss_pred             CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy1020           1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGG   80 (132)
Q Consensus         1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~   80 (132)
                      |+|+.|+..+++-+++.+..-..||+++|+||+||++|.+.|+||+.|||.+++|+|||..|++|++++.||.+++.|+.
T Consensus       807 FQLTVNVvAliv~fv~A~~~~dsPLtAVQlLWVNLIMDTLgALALATepPt~~Lm~RkP~GR~~~LIt~tMwknil~qa~  886 (1034)
T KOG0204|consen  807 FQLTVNVVALIVNFVSACATGDSPLTAVQLLWVNLIMDTLGALALATEPPTDELMKRKPVGRTKPLITRTMWKNILGQAV  886 (1034)
T ss_pred             eEEEEEEEeehhhhhhhhhcCCccHHHHHHHHHHHHHHHHHHHHhccCCCChHHhcCCCCCCCCcchHHHHHHHHHHHHH
Confidence            78999999999999999987789999999999999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHH
Q psy1020          81 YVGAATA   87 (132)
Q Consensus        81 i~a~~~~   87 (132)
                      ..-+..+
T Consensus       887 YQl~vl~  893 (1034)
T KOG0204|consen  887 YQLIVLF  893 (1034)
T ss_pred             HHHHHHH
Confidence            6655433

>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase

Probab=99.64  E-value=6.9e-16  Score=141.27  Aligned_cols=88  Identities=82%  Similarity=1.344  Sum_probs=83.6

Q ss_pred             CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy1020           1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGG   80 (132)
Q Consensus         1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~   80 (132)
                      |+++.|++++++++++.+++.|.|++|.|+||+|+++|.+|+++++.||+++++|+||||++++++++++++.+++.+|.
T Consensus       698 ~~l~~ni~~~~~~~~~~~~~~~~pl~~~qll~inli~d~lp~~~l~~~~~~~~~m~~pP~~~~~~l~~~~~~~~~~~~g~  777 (917)
T TIGR01116       698 YMISSNIGEVVCIFLTAALGIPEGLIPVQLLWVNLVTDGLPATALGFNPPDKDIMWKPPRRPDEPLITGWLFFRYLVVGV  777 (917)
T ss_pred             HHHhccHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHhcCCcchhHhcCCCCCCCCCcccHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1020          81 YVGAATAD   88 (132)
Q Consensus        81 i~a~~~~~   88 (132)
                      +++++++.
T Consensus       778 ~~~~~~~~  785 (917)
T TIGR01116       778 YVGLATVG  785 (917)
T ss_pred             HHHHHHHH
Confidence            99887654

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

Probab=99.62  E-value=1.4e-15  Score=140.28  Aligned_cols=88  Identities=27%  Similarity=0.432  Sum_probs=79.8

Q ss_pred             CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCC-CCCCCcHHHHHH-HHHH
Q psy1020           1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKA-DEGLISGWLFFR-YLAI   78 (132)
Q Consensus         1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~-~~~l~~~~l~~~-i~~~   78 (132)
                      |+++.|++++++++++.+++.|.|++|+|+||+|+++|.+|++++++||+|+++|+||||++ +++++++.++.. ++..
T Consensus       752 ~~l~~ni~~~~~~~~~~~~~~~~pl~~~qlL~inli~d~lp~~al~~e~~~~~~m~~~P~~~~~~~l~~~~~~~~~~~~~  831 (997)
T TIGR01106       752 YTLTSNIPEITPFLIFIIANIPLPLGTITILCIDLGTDMVPAISLAYEKAESDIMKRQPRNPKTDKLVNERLISMAYGQI  831 (997)
T ss_pred             HHHHhhHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCCCcCCccccccCHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999986 789999988754 6677


Q ss_pred             HHHHHHHHHH
Q psy1020          79 GGYVGAATAD   88 (132)
Q Consensus        79 G~i~a~~~~~   88 (132)
                      |+++++..+.
T Consensus       832 g~~~~~~~~~  841 (997)
T TIGR01106       832 GMIQALGGFF  841 (997)
T ss_pred             HHHHHHHHHH
Confidence            8888777664

Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase

Probab=99.59  E-value=2.6e-15  Score=137.79  Aligned_cols=89  Identities=31%  Similarity=0.481  Sum_probs=82.9

Q ss_pred             CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy1020           1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGG   80 (132)
Q Consensus         1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~   80 (132)
                      |.++.|+.+++..+++.+++.+.|++|.|+||+|+++|.+|+++++.|||++++|+||||+++++++++.++.+++.+|+
T Consensus       737 ~~l~~n~~~i~~~~~~~~~~~~~pl~~~qil~inl~~d~~~al~l~~e~~~~~lm~~~P~~~~~~li~~~~~~~i~~~~~  816 (941)
T TIGR01517       737 FQLTVNVVAVILTFVGSCISSTSPLTAVQLLWVNLIMDTLAALALATEPPTEALLDRKPIGRNAPLISRSMWKNILGQAG  816 (941)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhHHHHccCCccHHHHhCCCCCCCCCcCCHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1020          81 YVGAATADE   89 (132)
Q Consensus        81 i~a~~~~~~   89 (132)
                      ++++.++..
T Consensus       817 ~~~~~~~~~  825 (941)
T TIGR01517       817 YQLVVTFIL  825 (941)
T ss_pred             HHHHHHHHH
Confidence            888776643

The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.

>PRK15122 magnesium-transporting ATPase; Provisional

Probab=99.59  E-value=2.2e-15  Score=138.01  Aligned_cols=84  Identities=24%  Similarity=0.330  Sum_probs=71.6

Q ss_pred             CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy1020           1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGG   80 (132)
Q Consensus         1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~   80 (132)
                      |++++|++++++++++.+++.+.|++|+|+||+|+++|. |+++|++||+|+++| ||||+++++++++.++. +...+.
T Consensus       705 ~~ls~n~~~~~~~~~~~~~~~~~pl~~~qil~~nli~D~-~~lal~~d~~~~~~m-~~P~~~~~~~~~~~~~~-~g~~~~  781 (903)
T PRK15122        705 MTASSNFGNVFSVLVASAFIPFLPMLAIHLLLQNLMYDI-SQLSLPWDKMDKEFL-RKPRKWDAKNIGRFMLW-IGPTSS  781 (903)
T ss_pred             HHHhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH-HHHhhcCCCCCHhhc-CCCCCCChhhhHHHHHH-HHHHHH
Confidence            578999999999999988876689999999999999995 999999999999999 99999999999996664 444444


Q ss_pred             HHHHHHH
Q psy1020          81 YVGAATA   87 (132)
Q Consensus        81 i~a~~~~   87 (132)
                      +++++++
T Consensus       782 ~~~~~~~  788 (903)
T PRK15122        782 IFDITTF  788 (903)
T ss_pred             HHHHHHH
Confidence            4444444

>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=99.51  E-value=7.9e-14  Score=127.99  Aligned_cols=91  Identities=43%  Similarity=0.745  Sum_probs=82.4

Q ss_pred             CcccccHHHHHHHHHHHHhcCC-CchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHH-HHHH
Q psy1020           1 YLISSNIGEVVSIFLTAALGLP-EALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFR-YLAI   78 (132)
Q Consensus         1 ylLs~nv~eil~~l~~~l~g~p-~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~-i~~~   78 (132)
                      |+++.|++++++++++.+++.+ .|+++.|+||+|+++|.+|+++++.|+++.+.|++|||++++++++++.+.+ ++..
T Consensus       707 ~~l~~n~~~~~~~~~~~~~~~~~~p~~~~qll~inll~d~~pa~~L~~~~~~~~~m~~~~~~p~~~i~~~~~~~~~i~~~  786 (917)
T COG0474         707 YLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKRPPRGPEEGLFNRKIFWRFILII  786 (917)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhhhhheeecCCCcccccccCCCCccccccchhHHHHHHHHH
Confidence            5689999999999999999988 8999999999999999999999999999999999999999999999999988 6677


Q ss_pred             HHHHHHHHHHHHH
Q psy1020          79 GGYVGAATADEGL   91 (132)
Q Consensus        79 G~i~a~~~~~~~~   91 (132)
                      |...++..+.+..
T Consensus       787 ~~~~~i~~~~~~~  799 (917)
T COG0474         787 GLLSAILFILTFL  799 (917)
T ss_pred             HHHHHHHHHHHHH
Confidence            8777777655433

>PRK10517 magnesium-transporting ATPase MgtA; Provisional

Probab=99.50  E-value=3.9e-14  Score=129.85  Aligned_cols=80  Identities=26%  Similarity=0.342  Sum_probs=65.9

Q ss_pred             CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCC-CCCCCCCcHHHHHHHHHHH
Q psy1020           1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR-KADEGLISGWLFFRYLAIG   79 (132)
Q Consensus         1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr-~~~~~l~~~~l~~~i~~~G   79 (132)
                      |++++|++++++++++.++..+.|++|+|+||+|+++| +|++++++||+|+++|+|||| ++++      +...++..|
T Consensus       705 ~~ls~n~~~v~~~~~~~~~~~~~pl~~~qiL~inl~~D-~~~~al~~d~~~~~~m~~p~r~~~~~------~~~~~~~~g  777 (902)
T PRK10517        705 MTASSNFGNVFSVLVASAFLPFLPMLPLHLLIQNLLYD-VSQVAIPFDNVDDEQIQKPQRWNPAD------LGRFMVFFG  777 (902)
T ss_pred             HHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-HhHHhhcCCCCChhhhcCCCCCCHHH------HHHHHHHHH
Confidence            57899999999999998885448999999999999999 789999999999999999999 3322      445566777


Q ss_pred             HHHHHHHH
Q psy1020          80 GYVGAATA   87 (132)
Q Consensus        80 ~i~a~~~~   87 (132)
                      .+.++.++
T Consensus       778 ~~~~~~~~  785 (902)
T PRK10517        778 PISSIFDI  785 (902)
T ss_pred             HHHHHHHH
Confidence            76655444

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase

Probab=99.48  E-value=1.1e-13  Score=126.29  Aligned_cols=81  Identities=23%  Similarity=0.282  Sum_probs=66.5

Q ss_pred             CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy1020           1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGG   80 (132)
Q Consensus         1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~   80 (132)
                      |++++|+++++.++++.++..+.||+|+|+||+|+++| +|+++|++||+++++|++||| ++++    .+...++..|.
T Consensus       670 ~~ls~n~~~~~~~~~~~~~~~~~pl~~~qil~inl~~d-~~~~al~~~~~~~~~m~~p~~-~~~~----~~~~~~~~~g~  743 (867)
T TIGR01524       670 MTASSNFGNVFSVLVASAFIPFLPMLSLHLLIQNLLYD-FSQLTLPWDKMDREFLKKPHQ-WEQK----GMGRFMLCIGP  743 (867)
T ss_pred             HHHhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-HHHHhhcCCCCChHhhCCCCC-CChh----hHHHHHHHHHH
Confidence            57899999999999999887669999999999999999 799999999999999987666 6664    34445666666


Q ss_pred             HHHHHHH
Q psy1020          81 YVGAATA   87 (132)
Q Consensus        81 i~a~~~~   87 (132)
                      ..++.++
T Consensus       744 ~~~~~~~  750 (867)
T TIGR01524       744 VSSIFDI  750 (867)
T ss_pred             HHHHHHH
Confidence            5554443

The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.

>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V)

Probab=98.93  E-value=2.6e-09  Score=99.49  Aligned_cols=81  Identities=15%  Similarity=0.009  Sum_probs=66.9

Q ss_pred             ccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHHHH
Q psy1020           3 ISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGGYV   82 (132)
Q Consensus         3 Ls~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~i~   82 (132)
                      +..|+.+...+++...  .+.|+++.|+||+|+++|.+++++++.|||++++|++||+   ++++++.++.+++.++++.
T Consensus       869 ~~~~~~~~~~~~~l~~--~~~~l~~~Q~l~i~li~~~~~~l~l~~~~p~~~l~~~~P~---~~l~~~~~~~si~~q~~i~  943 (1054)
T TIGR01657       869 ALYSLIQFYSVSILYL--IGSNLGDGQFLTIDLLLIFPVALLMSRNKPLKKLSKERPP---SNLFSVYILTSVLIQFVLH  943 (1054)
T ss_pred             HHHHHHHHHHHHHHHH--ccCcCccHHHHHHHHHHHHHHHHHHHcCCchhhcCCCCCC---ccccCHHHHHHHHHHHHHH
Confidence            3445555555444333  4578999999999999999999999999999999999985   5899999999999999988


Q ss_pred             HHHHHH
Q psy1020          83 GAATAD   88 (132)
Q Consensus        83 a~~~~~   88 (132)
                      .+..+.
T Consensus       944 ~~~~~~  949 (1054)
T TIGR01657       944 ILSQVY  949 (1054)
T ss_pred             HHHHHH
Confidence            877554

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.

>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase

Probab=98.84  E-value=1.3e-08  Score=92.06  Aligned_cols=80  Identities=19%  Similarity=0.229  Sum_probs=61.7

Q ss_pred             CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy1020           1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGG   80 (132)
Q Consensus         1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~   80 (132)
                      |.+++|+++++.++++.++ .+.||+|+|+||+|+++|. +++++++|++++.   |+|++   ..+ ++++.+.+..|.
T Consensus       602 ~~~~~n~~~~~~~~~~~l~-~~~~l~~~~il~~~l~~d~-~~~~l~~~~~~~~---~~p~~---~~~-~~~~~~~~~~g~  672 (755)
T TIGR01647       602 YRIAETIRIVFFFGLLILI-LNFYFPPIMVVIIAILNDG-TIMTIAYDNVKPS---KLPQR---WNL-REVFTMSTVLGI  672 (755)
T ss_pred             HHhcccHHHHHHHHHHHHH-hCcchhHHHHHHHHHHHhH-hHhhccCCCCCCC---CCCCc---cch-HHHHHHHHHHHH
Confidence            5689999999988887763 3456999999999999995 6999999998853   33443   334 467777888998


Q ss_pred             HHHHHHHHH
Q psy1020          81 YVGAATADE   89 (132)
Q Consensus        81 i~a~~~~~~   89 (132)
                      ++++.++..
T Consensus       673 ~~~~~~~~~  681 (755)
T TIGR01647       673 YLVISTFLL  681 (755)
T ss_pred             HHHHHHHHH
Confidence            888865543

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.

>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase

Probab=98.30  E-value=1.2e-06  Score=81.88  Aligned_cols=89  Identities=15%  Similarity=0.125  Sum_probs=72.0

Q ss_pred             CcccccHHHHHHHHHHHHhc-C-C-CchHHHHHHHHHHhhhhhhhhhccc--CCCCccCccCCCC----CCCCCCCcHHH
Q psy1020           1 YLISSNIGEVVSIFLTAALG-L-P-EALIPVQLLWVNLVTDGLPATALGF--NPPDLDIMDKPPR----KADEGLISGWL   71 (132)
Q Consensus         1 ylLs~nv~eil~~l~~~l~g-~-p-~pL~piQILwiNLv~d~~palaL~~--ep~e~~iM~rpPr----~~~~~l~~~~l   71 (132)
                      |.+..|+..+++.++..++. . + .++.+.|++|.|+++|.+|++++|.  +++++++|+|+|+    .++++.++++.
T Consensus       836 ~~~~kn~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~n~~~t~lp~~~l~~~d~~~~~~~l~~~P~ly~~~~~~~~~~~~~  915 (1057)
T TIGR01652       836 YFFYKNLIFAIIQFWYSFYNGFSGQTLYEGWYMVLYNVFFTALPVISLGVFDQDVSASLSLRYPQLYREGQKGQGFSTKT  915 (1057)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHhChHHHHHhhhcCCCCHHH
Confidence            45677888888777766653 2 1 3689999999999999999999986  5778899999999    56788999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy1020          72 FFRYLAIGGYVGAATADE   89 (132)
Q Consensus        72 ~~~i~~~G~i~a~~~~~~   89 (132)
                      +.+++..|++.++..++-
T Consensus       916 f~~~~~~~~~~~~ii~~~  933 (1057)
T TIGR01652       916 FWGWMLDGIYQSLVIFFF  933 (1057)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888888888888776543

This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	132
3ba6_A	994	Structure Of The Ca2e1p Phosphoenzyme Intermediate		5e-41
2dqs_A	995	Crystal Structure Of The Calcium Pump With Amppcp I		5e-41
1kju_A	994	Ca2+-Atpase In The E2 State Length = 994		5e-41
3tlm_A	992	Crystal Structure Of Endoplasmic Reticulum Ca2+-Atp		6e-41
2voy_L	21	Cryoem Model Of Copa, The Copper Transporting Atpas		2e-05
3b8e_A	998	Crystal Structure Of The Sodium-Potassium Pump Leng		1e-04
3n23_A	992	Crystal Structure Of The High Affinity Complex Betw		1e-04
2zxe_A	1028	Crystal Structure Of The Sodium - Potassium Pump In		4e-04

>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The Serca Ca2+-Atpase Length = 994

Iteration: 1
 Score =  162 bits (410), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 73/81 (90%), Positives = 76/81 (93%)
Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSN+GEVV IFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMD+PPR
Sbjct: 763 YLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPR 822
Query: 61  KADEGLISGWLFFRYLAIGGY 81
              E LISGWLFFRY+AIGGY
Sbjct: 823 SPKEPLISGWLFFRYMAIGGY 843

>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The Absence Of Calcium Length = 995

Iteration: 1
 Score =  162 bits (410), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 73/81 (90%), Positives = 76/81 (93%)
Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSN+GEVV IFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMD+PPR
Sbjct: 764 YLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPR 823
Query: 61  KADEGLISGWLFFRYLAIGGY 81
              E LISGWLFFRY+AIGGY
Sbjct: 824 SPKEPLISGWLFFRYMAIGGY 844

>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State Length = 994

Iteration: 1
 Score =  162 bits (410), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 73/81 (90%), Positives = 76/81 (93%)
Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSN+GEVV IFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMD+PPR
Sbjct: 763 YLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPR 822
Query: 61  KADEGLISGWLFFRYLAIGGY 81
              E LISGWLFFRY+AIGGY
Sbjct: 823 SPKEPLISGWLFFRYMAIGGY 843

>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase (Serca) From Bovine Muscle Length = 992

Iteration: 1
 Score =  162 bits (409), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 73/81 (90%), Positives = 76/81 (93%)
Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSN+GEVV IFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMD+PPR
Sbjct: 762 YLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPR 821
Query: 61  KADEGLISGWLFFRYLAIGGY 81
              E LISGWLFFRY+AIGGY
Sbjct: 822 TPKEPLISGWLFFRYMAIGGY 842

>pdb|2VOY|L Chain L, Cryoem Model Of Copa, The Copper Transporting Atpase From Archaeoglobus Fulgidus Length = 21

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 27 PVQLLWVNLVTDGLPATALGF 47
          PVQLLWVNLVTDGLPATALGF
Sbjct: 1  PVQLLWVNLVTDGLPATALGF 21

>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump Length = 998

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           Y ++SNI E+    +     +P  L  V +L ++L TD +PA +L +   + DIM + PR
Sbjct: 753 YTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPR 812
Query: 61  K------ADEGLIS 68
                   +E LIS
Sbjct: 813 NPKTDKLVNEQLIS 826

>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between Ouabain And The E2p Form Of The Sodium-Potassium Pump Length = 992

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           Y ++SNI E+    +     +P  L  V +L ++L TD +PA +L +   + DIM + PR
Sbjct: 747 YTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPR 806
Query: 61  K------ADEGLIS 68
                   +E LIS
Sbjct: 807 NPKTDKLVNEQLIS 820

>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The E2.2k+.Pi State Length = 1028

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           Y ++SNI E+    +     +P  L  V +L ++L TD +PA +L +   + DIM + PR
Sbjct: 783 YTLTSNIPEITPFLVFIIGNVPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPR 842

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	2e-52
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	3e-34
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	2e-31
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	6e-15
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	2e-13
2voy_D	26	Sarcoplasmic/endoplasmic reticulum calcium ATPase	7e-07

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Length = 995

 Score =  176 bits (448), Expect = 2e-52
 Identities = 92/132 (69%), Positives = 98/132 (74%), Gaps = 25/132 (18%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSN+GEVV IFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMD+PPR
Sbjct: 764 YLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPR 823

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
                                       E LISGWLFFRY+AIGGYVGAATVGAAAWWF+
Sbjct: 824 S-------------------------PKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFM 858

Query: 121 YSPYGPQMTYWQ 132
           Y+  GP +TY Q
Sbjct: 859 YAEDGPGVTYHQ 870

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A Length = 1034

 Score =  123 bits (312), Expect = 3e-34
 Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 15/140 (10%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           Y ++ NI E+    +   + +P  L  + +L++ L TD  P+ +L +   + DIM   PR
Sbjct: 788 YTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPR 847

Query: 61  KADEGLI--SGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWW 118
                 +       + Y  IG     A           +F  +A  G+     VG    W
Sbjct: 848 NPKRDRLVNEPLAAYSYFQIGAIQSFAGF-------TDYFTAMAQEGWFPLLCVGLRPQW 900

Query: 119 F------LYSPYGPQMTYWQ 132
                  L   YG + T+ Q
Sbjct: 901 ENHHLQDLQDSYGQEWTFGQ 920

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Length = 1028

 Score =  116 bits (293), Expect = 2e-31
 Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 15/140 (10%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           Y ++SNI E+    +     +P  L  V +L ++L TD +PA +L +   + DIM + PR
Sbjct: 783 YTLTSNIPEITPFLVFIIGNVPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPR 842

Query: 61  KADEGLISGWLFFR--YLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWW 118
                 +         Y  IG               + +F  LA  G++    +G    W
Sbjct: 843 NPKTDKLVNERLISMAYGQIGMIQALGGF-------FSYFVILAENGFLPMDLIGKRVRW 895

Query: 119 F------LYSPYGPQMTYWQ 132
                  +   +G Q TY Q
Sbjct: 896 DDRWISDVEDSFGQQWTYEQ 915

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885

 Score = 68.9 bits (169), Expect = 6e-15
 Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 13/119 (10%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           Y +S  I  V    L  AL          +L + ++ DG     +  +          P 
Sbjct: 648 YAVSITIRIVFGFML-IALIWEFDFSAFMVLIIAILNDG-TIMTISKDRVK---PSPTPD 702

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWF 119
                 I    F   + +GGY    T    +I  W   +        G  ++       
Sbjct: 703 SWKLKEI----FATGVVLGGYQAIMT----VIFFWAAHKTDFFSDTFGVRSIRDNNHEL 753

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           Y I+ +I   + + L     L  +L    ++++ +  D +   A+ ++            
Sbjct: 694 YRIALSIHLEIFLGL-WIAILNRSLNIELVVFIAIFAD-VATLAIAYDNAPYSQTPVKWN 751

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATA 87
                 +S  L    LA+G ++   T 
Sbjct: 752 LPKLWGMSVLLGV-VLAVGTWITVTTM 777

>2voy_D Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; hydrolasep-type ATPase, cryo-EM, helical reconstruction, membrane protein; 17.50A {Oryctolagus cuniculus} Length = 26

 Score = 41.9 bits (98), Expect = 7e-07
 Identities = 22/23 (95%), Positives = 23/23 (100%)

Query: 95  WLFFRYLAIGGYVGAATVGAAAW 117
           WLFFRY+AIGGYVGAATVGAAAW
Sbjct: 1   WLFFRYMAIGGYVGAATVGAAAW 23

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	99.8
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	99.69
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	99.58
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	98.48
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	98.1
2voy_D	26	Sarcoplasmic/endoplasmic reticulum calcium ATPase	97.42

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A

Probab=99.80  E-value=5.6e-20  Score=167.92  Aligned_cols=125  Identities=26%  Similarity=0.417  Sum_probs=95.4

Q ss_pred             CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCC-CCCCCcHHHHHHH-HHH
Q psy1020           1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKA-DEGLISGWLFFRY-LAI   78 (132)
Q Consensus         1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~-~~~l~~~~l~~~i-~~~   78 (132)
                      |+++.|++++++++++.+++.|.|++|+|+||+|+++|.+|+++|++||+|+++|+||||++ ++++++++++.++ +..
T Consensus       788 ~~l~~ni~~~~~~~~~~~~~~~~pl~~~qiL~inl~~d~~palal~~e~~~~~~m~~~Pr~~~~~~l~~~~~~~~~~~~~  867 (1034)
T 3ixz_A          788 YTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVNEPLAAYSYFQI  867 (1034)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhCCCCCCccccccCHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999998 7899999998764 556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhheeee------ecCCCCcccccC
Q psy1020          79 GGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL------YSPYGPQMTYWQ  132 (132)
Q Consensus        79 G~i~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  132 (132)
                      |+++++.++.       +++.++..+++.+....+....|..      ...+|++|||.|
T Consensus       868 g~~~~~~~~~-------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  920 (1034)
T 3ixz_A          868 GAIQSFAGFT-------DYFTAMAQEGWFPLLCVGLRPQWENHHLQDLQDSYGQEWTFGQ  920 (1034)
T ss_pred             HHHHHHHHHH-------HHHHHHhhcCCccccccccccccccccccccccccccccchhh
Confidence            8877766543       3344444433333222222222322      235677787764

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...

Probab=99.69  E-value=2.6e-17  Score=149.68  Aligned_cols=87  Identities=90%  Similarity=1.467  Sum_probs=80.7

Q ss_pred             CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy1020           1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGG   80 (132)
Q Consensus         1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~   80 (132)
                      |.++.|++++++++++.++|.|.|++|+|+||+|+++|.+|++++++||+++++|+||||++++++++++++.+++.+|+
T Consensus       764 ~~l~~Ni~~~~~~~~~~~~g~~~pl~~~qil~~nl~~d~~p~l~l~~~~~~~~~m~~~P~~~~~~l~~~~~~~~~~~~g~  843 (995)
T 3ar4_A          764 YLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGG  843 (995)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHTTTHHHHHHHTTCCCCTTGGGSCCCCTTCCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhhccCCCChhHHhCCCCCCcccccCHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHH
Q psy1020          81 YVGAATA   87 (132)
Q Consensus        81 i~a~~~~   87 (132)
                      ++++.++
T Consensus       844 ~~~~~~~  850 (995)
T 3ar4_A          844 YVGAATV  850 (995)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776643

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A

Probab=99.58  E-value=2.1e-15  Score=137.88  Aligned_cols=88  Identities=28%  Similarity=0.406  Sum_probs=79.6

Q ss_pred             CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCC-CCCcHHHHHH-HHHH
Q psy1020           1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADE-GLISGWLFFR-YLAI   78 (132)
Q Consensus         1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~-~l~~~~l~~~-i~~~   78 (132)
                      |.++.|+++++.++++.+++.|.|++|+|+||+|+++|.+|++++++||+++++|+||||++++ ++++++++.+ ++..
T Consensus       783 ~~l~~n~~~~~~~~~~~~~~~~~~l~~~qil~inl~~d~~pa~al~~e~~~~~~m~~~Pr~~~~~~l~~~~~~~~~~~~~  862 (1028)
T 2zxe_A          783 YTLTSNIPEITPFLVFIIGNVPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNERLISMAYGQI  862 (1028)
T ss_dssp             HHHHTTHHHHHHHHHHHHHCCCCSSCHHHHHHHHTTTTHHHHHHGGGCCCSSCGGGSCCCCTTTCCSSCHHHHHHHTTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHhccCccchhhhccCCCCcccccccCHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999999999999999999866 9999998876 5677


Q ss_pred             HHHHHHHHHH
Q psy1020          79 GGYVGAATAD   88 (132)
Q Consensus        79 G~i~a~~~~~   88 (132)
                      |+++++.++.
T Consensus       863 g~~~~~~~~~  872 (1028)
T 2zxe_A          863 GMIQALGGFF  872 (1028)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8887776554

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1

Probab=98.48  E-value=4.9e-08  Score=88.92  Aligned_cols=78  Identities=17%  Similarity=0.179  Sum_probs=55.2

Q ss_pred             CcccccHHHHHHH-HHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHH
Q psy1020           1 YLISSNIGEVVSI-FLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIG   79 (132)
Q Consensus         1 ylLs~nv~eil~~-l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G   79 (132)
                      |+++.|+++...+ +...++|.  |++|.|++|+|+++|. |++++++|+++++   ||||+++.    ++++.+++..|
T Consensus       694 ~~l~~n~~~~~~~~~~~~~~~~--~l~~~~il~~~l~~d~-~~lal~~e~~~~~---~~P~~~~~----~~~~~~~~~~g  763 (920)
T 1mhs_A          694 YRIALSIHLEIFLGLWIAILNR--SLNIELVVFIAIFADV-ATLAIAYDNAPYS---QTPVKWNL----PKLWGMSVLLG  763 (920)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCSC--CCCHHHHHHHHHHHTT-HHHHCCCCCSGGG---GSCCCCCS----SSCSSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHH-HhhhhcccCcccc---cCCCCchH----HHHHHHHHHHH
Confidence            4567787764332 33344444  5899999999999996 9999999999876   77888765    33444556677


Q ss_pred             HHHHHHHHH
Q psy1020          80 GYVGAATAD   88 (132)
Q Consensus        80 ~i~a~~~~~   88 (132)
                      .++++.++.
T Consensus       764 ~~~~~~~~~  772 (920)
T 1mhs_A          764 VVLAVGTWI  772 (920)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777776543

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}

Probab=98.10  E-value=2.4e-07  Score=83.93  Aligned_cols=79  Identities=19%  Similarity=0.213  Sum_probs=54.9

Q ss_pred             CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy1020           1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGG   80 (132)
Q Consensus         1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~   80 (132)
                      |.++.|+++++.++.+.+ +++.|++|+|++|+|+++|..+ +++++|+.++      ||+++...+ ++++.+.+..|.
T Consensus       648 ~~l~~n~~~~~~~~~~~~-~~~~~l~p~~il~i~l~~d~~~-l~l~~~~~~~------~~~p~~~~~-~~~~~~~~~~g~  718 (885)
T 3b8c_A          648 YAVSITIRIVFGFMLIAL-IWEFDFSAFMVLIIAILNDGTI-MTISKDRVKP------SPTPDSWKL-KEIFATGVVLGG  718 (885)
T ss_dssp             HHHHHTTTTTSTTHHHHS-SCSSCSCHHHHHHHHHHHHTTT-CCCCCCCCCC------SSCCCSTTT-TTTTTTHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHH-ccCcCcCHHHHHHHHHHHHHHH-HhhcccccCc------ccCCcchhH-HHHHHHHHHHHH
Confidence            456777776655555444 6788999999999999999876 9999988765      233333333 445555667777


Q ss_pred             HHHHHHHH
Q psy1020          81 YVGAATAD   88 (132)
Q Consensus        81 i~a~~~~~   88 (132)
                      ++++.++.
T Consensus       719 ~~~~~~~~  726 (885)
T 3b8c_A          719 YQAIMTVI  726 (885)
T ss_dssp             STHHHHTT
T ss_pred             HHHHHHHH
Confidence            77776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d1wpga4	472	f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATP	5e-25

>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 472

class: Membrane and cell surface proteins and peptides
fold: Calcium ATPase, transmembrane domain M
superfamily: Calcium ATPase, transmembrane domain M
family: Calcium ATPase, transmembrane domain M
domain: Calcium ATPase, transmembrane domain M
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 96.3 bits (239), Expect = 5e-25
 Identities = 92/132 (69%), Positives = 98/132 (74%), Gaps = 25/132 (18%)

Query: 1   YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 60
           YLISSN+GEVV IFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMD+PPR
Sbjct: 241 YLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPR 300

Query: 61  KADEGLISGWLFFRYLAIGGYVGAATADEGLISGWLFFRYLAIGGYVGAATVGAAAWWFL 120
                                       E LISGWLFFRY+AIGGYVGAATVGAAAWWF+
Sbjct: 301 S-------------------------PKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFM 335

Query: 121 YSPYGPQMTYWQ 132
           Y+  GP +TY Q
Sbjct: 336 YAEDGPGVTYHQ 347

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d1wpga4	472	Calcium ATPase, transmembrane domain M {Rabbit (Or	99.84

>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Membrane and cell surface proteins and peptides
fold: Calcium ATPase, transmembrane domain M
superfamily: Calcium ATPase, transmembrane domain M
family: Calcium ATPase, transmembrane domain M
domain: Calcium ATPase, transmembrane domain M
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.84  E-value=3.9e-22  Score=166.33  Aligned_cols=88  Identities=89%  Similarity=1.451  Sum_probs=83.3

Q ss_pred             CcccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhhhhhcccCCCCccCccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy1020           1 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYLAIGG   80 (132)
Q Consensus         1 ylLs~nv~eil~~l~~~l~g~p~pL~piQILwiNLv~d~~palaL~~ep~e~~iM~rpPr~~~~~l~~~~l~~~i~~~G~   80 (132)
                      |++++|++++..++++.+++.|.|++|+|+||+|+++|++|+++|+.||+|+|+|+||||++++++++++++.++..+|.
T Consensus       241 ~~l~~n~~~v~~~~~~~~l~~p~pl~~~qILwinli~d~lpaiaL~~ep~d~~iM~~~Pr~~~~~li~~~~~~~i~~~g~  320 (472)
T d1wpga4         241 YLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGG  320 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCCSCCHHHHHHHHHTTTHHHHHHHTTCCCCSGGGGSCCCCTTCCSSCTHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHcCCCccccHHHHHHHHHHhHHHHHHHHhcCCCchhhhcCCCCCCCccccCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHH
Q psy1020          81 YVGAATAD   88 (132)
Q Consensus        81 i~a~~~~~   88 (132)
                      .+++.++.
T Consensus       321 ~~~~~~~~  328 (472)
T d1wpga4         321 YVGAATVG  328 (472)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88777553