Psyllid ID: psy10222
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1693 | 2.2.26 [Sep-21-2011] | |||||||
| B0WC46 | 517 | Facilitated trehalose tra | N/A | N/A | 0.249 | 0.818 | 0.307 | 3e-59 | |
| A9ZSY2 | 502 | Facilitated trehalose tra | N/A | N/A | 0.274 | 0.924 | 0.321 | 8e-59 | |
| Q8MKK4 | 488 | Facilitated trehalose tra | yes | N/A | 0.250 | 0.868 | 0.319 | 1e-56 | |
| B4QBN3 | 488 | Facilitated trehalose tra | N/A | N/A | 0.251 | 0.870 | 0.317 | 2e-56 | |
| B4HNS1 | 488 | Facilitated trehalose tra | N/A | N/A | 0.251 | 0.870 | 0.317 | 2e-56 | |
| B4P624 | 856 | Facilitated trehalose tra | N/A | N/A | 0.255 | 0.505 | 0.314 | 4e-56 | |
| Q17NV8 | 806 | Facilitated trehalose tra | N/A | N/A | 0.249 | 0.524 | 0.307 | 3e-55 | |
| A9ZSY3 | 505 | Facilitated trehalose tra | N/A | N/A | 0.284 | 0.954 | 0.284 | 3e-55 | |
| B3NSE1 | 856 | Facilitated trehalose tra | N/A | N/A | 0.249 | 0.494 | 0.312 | 5e-55 | |
| B4HNS0 | 857 | Facilitated trehalose tra | N/A | N/A | 0.249 | 0.493 | 0.314 | 7e-55 |
| >sp|B0WC46|TRET1_CULQU Facilitated trehalose transporter Tret1 OS=Culex quinquefasciatus GN=Tret1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 231 bits (590), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 135/439 (30%), Positives = 231/439 (52%), Gaps = 16/439 (3%)
Query: 1240 ATLAAGSAGAYSAVLLPQLESAN-STIPITPEDGTWIASMASLPTFIACILGSFLMEMYG 1298
++ G + AY++ L ++ N ++ +T + G+W+ + L + ILG L+E G
Sbjct: 66 GSMVVGFSSAYTSPALVSMKDRNITSFEVTDQSGSWVGGIMPLAGLVGGILGGPLIEYLG 125
Query: 1299 RRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRG 1358
R+ T L PFI+ W++I+ AT V ++L GR L+GF++G++S VY+ ET +P+ RG
Sbjct: 126 RKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVYLGETVQPEVRG 185
Query: 1359 VLSALLCTAVAIGIFTAHLLGTFLHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFT 1418
L L IGI + G ++ W + + A P I + PE+P W S+G
Sbjct: 186 TLGLLPTAFGNIGILLCFVAGNYMDWSELAFLGATLPVPFLILMFLIPETPRWYVSRGRD 245
Query: 1419 VQAQQAFYWLRGHTAESEFEFKSML-NHAERSTITKSENMTDKKKKLEWKKNILCTEFLK 1477
+A++A WLRG A+ + E K ++ +H + M D KK LK
Sbjct: 246 DRARKALQWLRGKKADVDPELKGIIKSHQDAERHASQSAMLDLLKKTN----------LK 295
Query: 1478 PLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLR 1537
PL I L F QQ SG+N +IFYTV I ++ ++E TI++ +V + F+ L+
Sbjct: 296 PLLISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATLLID 355
Query: 1538 IFGRRPLALLSCLGTCLSLLGVASI--LKFMQGLLP--SFMPVILLMFYMVFVSIGLQQL 1593
GR+ L +S + ++L+ + +K G + ++P+ + +++ S+G +
Sbjct: 356 RLGRKMLLYISDIAMIITLMTLGGFFYVKNNGGDVSHIGWLPLASFVIFVLGFSLGFGPI 415
Query: 1594 PWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGF 1653
PW+M+GE+ P R + ++T F + FVV KT + SIGT F ++G + G
Sbjct: 416 PWLMMGEILPGKIRGSAASVATAFNWSCTFVVTKTFADIIASIGTHGAFWMFGSVCVVGL 475
Query: 1654 VFLYIFLPETKNKTLQQIE 1672
VF+ +++PET+ K+L+ IE
Sbjct: 476 VFVIMYVPETQGKSLEDIE 494
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High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Culex quinquefasciatus (taxid: 7176) |
| >sp|A9ZSY2|TRET1_APILI Facilitated trehalose transporter Tret1 OS=Apis mellifera ligustica GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 230 bits (586), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 155/482 (32%), Positives = 252/482 (52%), Gaps = 18/482 (3%)
Query: 1201 SRNVNVGTCVKRYYESKYCEQQSSYVRCD-KLIAAGGPLTATLAAGSAGAY-SAVLLPQL 1258
S+N+ +++ E + S +R +L+AA A+L G + +Y S L+
Sbjct: 12 SQNIKPAKDSDDVLHTQFKEVKRSPMRYTMQLLAALAVSMASLMIGYSSSYTSPALVSMR 71
Query: 1259 ESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIIS 1318
++ +T +T + WI S+ L I I+G +E GRR T L +PF+ GW+ I+
Sbjct: 72 DNTTATFEVTMDMAMWIGSIMPLSALIGGIIGGPCIEYIGRRNTILSTALPFLAGWLFIA 131
Query: 1319 LATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLL 1378
LAT V +IL GR + GF +G++S VY+ E+ +P+ RG L L GI
Sbjct: 132 LATNVAMILVGRSICGFCVGVASLSLPVYLGESIQPEVRGSLGLLPTVFGNSGILMCFTA 191
Query: 1379 GTFLHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFE 1438
G +L W+ + + A P I + PE+P W SKG +A+++ WLRG TA+ E
Sbjct: 192 GMYLAWRNLALLGACIPIIFLILMFLIPETPRWYISKGKIKEARKSLQWLRGKTADISEE 251
Query: 1439 FKSMLN-HAERSTITKSENMTDKKKKLE-WKKNILCTEFLKPLAIILVFFFVQQFSGLNT 1496
S+ H E SE + + +E ++KN +KP+ I L F QQFSG+N
Sbjct: 252 LDSIQKMHIE------SERIATEGALIELFRKN-----HIKPVFISLGLMFFQQFSGINA 300
Query: 1497 LIFYTVGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSL 1556
+IFYTV I K+ V+E +TI++ +V + FV ++ GR+ L +S + C++L
Sbjct: 301 VIFYTVQIFKDSGSTVDENLSTIIVGLVNFISTFVAAMIIDRLGRKMLLYISSILMCITL 360
Query: 1557 LGVAS---ILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGI 1613
+ + + M ++P++ L+ Y++ S G +PW+M+GE+ P R + +
Sbjct: 361 FTFGTFFYVKELMDVTAFGWIPLMSLIVYVIGFSFGFGPIPWLMMGEILPVKIRGTAASV 420
Query: 1614 STCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQIED 1673
+T F + FVV KT L L IG TF L+G + A F+F+ I +PET+ ++L++IE
Sbjct: 421 ATAFNWSCTFVVTKTYEDLVLHIGPYGTFWLFGTLVAVAFIFVIICVPETRGRSLEEIER 480
Query: 1674 DF 1675
F
Sbjct: 481 RF 482
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Moderate-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Apis mellifera ligustica (taxid: 7469) |
| >sp|Q8MKK4|TRE12_DROME Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila melanogaster GN=Tret1-2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (567), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 143/448 (31%), Positives = 231/448 (51%), Gaps = 24/448 (5%)
Query: 1241 TLAAGSAGAY-SAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGR 1299
+L G AY S L+ + ++ +T + G+W+ + L I G L+E GR
Sbjct: 39 SLVVGFVSAYTSPALVSMTDRTITSFEVTKDAGSWVGGIMPLAALAGGITGGPLIEYLGR 98
Query: 1300 RLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGV 1359
R T L +PFI+ ++I+ A V +IL GRFLTGF +G++S VY+ ET +P+ RG
Sbjct: 99 RSTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLPVYLGETLQPEVRGT 158
Query: 1360 LSALLCTAVAIGIFTAHLLGTFLHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTV 1419
L L IGI ++ G+F++W + + A P I PE+P W ++G
Sbjct: 159 LGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLILMIIIPETPRWFVNRGQEE 218
Query: 1420 QAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLE-WKKNILCTEFLKP 1478
+A++A WLRG A+ E E K ++ + ++N LE +K+N LKP
Sbjct: 219 RARKALKWLRGKEADVEPELKELMQSQADADRQATQNTC-----LELFKRN-----NLKP 268
Query: 1479 LAIILVFFFVQQFSGLNTLIFYTVGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRI 1538
L+I L F QQFSG+N +IFYTV I K+ ++ +TI++ +V F+ L+
Sbjct: 269 LSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLSTIIVGVVNFFATFMGIILIDR 328
Query: 1539 FGRRPLALLSCLGTCLSLLGVASILK---FMQGLLPS-----FMPVILLMFYMVFVSIGL 1590
GR+ L +S + ++L SIL + + P ++P+ + Y++ S+G
Sbjct: 329 LGRKILLYVSDIAMIVTL----SILGGFFYCKAHGPDVSHLGWLPLTCFVIYILGFSLGF 384
Query: 1591 QQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITA 1650
+PW+M+GE+ P R + + T F + FVV KT L +++G F L+G I
Sbjct: 385 GPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICI 444
Query: 1651 FGFVFLYIFLPETKNKTLQQIEDDFKSK 1678
G F+ IF+PET+ K+L++IE +
Sbjct: 445 VGLFFVIIFVPETRGKSLEEIERKMMGR 472
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Fails to transport trehalose. Drosophila melanogaster (taxid: 7227) |
| >sp|B4QBN3|TRE12_DROSI Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila simulans GN=Tret1-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 222 bits (566), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 142/447 (31%), Positives = 228/447 (51%), Gaps = 22/447 (4%)
Query: 1241 TLAAGSAGAY-SAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGR 1299
+L G AY S L+ + ++ +T + G+W+ + L I G L+E GR
Sbjct: 39 SLVVGFVSAYTSPALVSMTDRTITSFEVTKDAGSWVGGIMPLAALAGGITGGPLIEYLGR 98
Query: 1300 RLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGV 1359
R T L +PFI+ ++I+ A V +IL GRFLTGF +G++S VY+ ET +P+ RG
Sbjct: 99 RTTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLPVYLGETLQPEVRGT 158
Query: 1360 LSALLCTAVAIGIFTAHLLGTFLHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTV 1419
L L IGI ++ G+F++W + + A P I PE+P W ++G
Sbjct: 159 LGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLILMIIIPETPRWFVNRGQEE 218
Query: 1420 QAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPL 1479
+A++A WLRG A+ E E K ++ ++++ + LE K I LKPL
Sbjct: 219 RARKALKWLRGKEADVEPELKDLMQSQ-----AEADSQARRNTCLELFKRI----NLKPL 269
Query: 1480 AIILVFFFVQQFSGLNTLIFYTVGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIF 1539
+I L F QQFSG+N +IFYTV I K+ ++ TI++ IV F+ L+
Sbjct: 270 SISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLCTIIVGIVNFFATFMGILLIDRL 329
Query: 1540 GRRPLALLSCLGTCLSLLGVASILK---FMQGLLPS-----FMPVILLMFYMVFVSIGLQ 1591
GR+ L +S + L+L SIL + + P ++P+ + Y++ S+G
Sbjct: 330 GRKILLYISDIAMILTL----SILGGFFYCKAHGPDVSHLGWLPLTCFVIYILGFSLGFG 385
Query: 1592 QLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAF 1651
+PW+M+GE+ P R + + T F + FVV KT L +++G F L+G +
Sbjct: 386 PIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGVVCIV 445
Query: 1652 GFVFLYIFLPETKNKTLQQIEDDFKSK 1678
G F+ I +PET+ K+L++IE +
Sbjct: 446 GLFFVIICVPETRGKSLEEIERKMMGR 472
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Fails to transport trehalose. Drosophila simulans (taxid: 7240) |
| >sp|B4HNS1|TRE12_DROSE Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila sechellia GN=Tret1-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 222 bits (566), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 142/447 (31%), Positives = 229/447 (51%), Gaps = 22/447 (4%)
Query: 1241 TLAAGSAGAY-SAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGR 1299
+L G AY S L+ + ++ +T + G+W+ + L I G L+E GR
Sbjct: 39 SLVVGFVSAYTSPALVSMTDRTITSFEVTKDAGSWVGGIMPLAALAGGITGGPLIEYLGR 98
Query: 1300 RLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGV 1359
R T L +PFI+ ++I+ A V +IL GRFLTGF +G++S VY+ ET +P+ RG
Sbjct: 99 RNTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLPVYLGETLQPEVRGT 158
Query: 1360 LSALLCTAVAIGIFTAHLLGTFLHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTV 1419
L L IGI ++ G+F++W + + A P I PE+P W ++G
Sbjct: 159 LGLLPTALGNIGILVCYVAGSFMNWSILAFLGAALPVPFLILMIIIPETPRWFVNRGQEE 218
Query: 1420 QAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPL 1479
+A++A WLRG A+ E E K ++ ++++ + LE K I LKPL
Sbjct: 219 RARKALKWLRGKEADVEPELKDLMQSQ-----AEADSQATRNTCLELFKRI----NLKPL 269
Query: 1480 AIILVFFFVQQFSGLNTLIFYTVGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIF 1539
+I L F QQFSG+N +IFYTV I K+ ++ TI++ IV F+ L+
Sbjct: 270 SISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLCTIIVGIVNFFATFMGIILIDRL 329
Query: 1540 GRRPLALLSCLGTCLSLLGVASILK---FMQGLLPS-----FMPVILLMFYMVFVSIGLQ 1591
GR+ L +S + L+L SIL + + P ++P+ + Y++ S+G
Sbjct: 330 GRKILLYVSDIAMILTL----SILGGFFYCKAHGPDVSHLGWLPLSCFVIYILGFSLGFG 385
Query: 1592 QLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAF 1651
+PW+M+GE+ P R + + T F + FVV KT L +++G F L+G +
Sbjct: 386 PIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGPHGAFWLFGVVCIV 445
Query: 1652 GFVFLYIFLPETKNKTLQQIEDDFKSK 1678
G F+ I++PET+ K+L++IE +
Sbjct: 446 GLFFVIIYVPETRGKSLEEIERKMMGR 472
|
Fails to transport trehalose. Drosophila sechellia (taxid: 7238) |
| >sp|B4P624|TRET1_DROYA Facilitated trehalose transporter Tret1 OS=Drosophila yakuba GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (563), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 141/449 (31%), Positives = 230/449 (51%), Gaps = 16/449 (3%)
Query: 1230 KLIAAGGPLTATLAAGSAGAYSAVLLPQLESAN-STIPITPEDGTWIASMASLPTFIACI 1288
++IAA +L G AY++ L + N ++ +T + G+W+ + L + +
Sbjct: 395 QVIAALSVSLGSLVVGFVSAYTSPALVSMSDPNITSFTVTKDAGSWVGGIMPLAGLVGGV 454
Query: 1289 LGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYI 1348
G L+E GRR T L +PFI+ ++I+ A V ++L GRFL GF +G++S VY+
Sbjct: 455 AGGPLIEYMGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVYL 514
Query: 1349 AETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFLHWKTTSAVCALFPCASFIFAYFTPES 1408
ET +P+ RG L L IGI + G+F++W + + A P I + PE+
Sbjct: 515 GETVQPEVRGTLGLLPTAFGNIGILVCFVAGSFMNWSMLAFLGAALPVPFLILMFLIPET 574
Query: 1409 PPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKK 1468
P W S+G +A++A WLRG A+ E E K ++ +S+ D++
Sbjct: 575 PRWYVSRGREERARKALTWLRGKEADVEPELKGLM---------RSQADADRQATQNTML 625
Query: 1469 NILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPDVNEYTATIVIDIVRVVM 1528
+L LKPL+I L F QQFSG+N +IFYTV I K+ ++ TI++ +V V
Sbjct: 626 ELLKRNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDGNVCTIIVGVVNFVA 685
Query: 1529 AFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPS-----FMPVILLMFYM 1583
F+ L+ GR+ L S + L+L + + + P ++P+ + Y+
Sbjct: 686 TFIGILLIDRAGRKILLYASDIAMVLTLFVLGGFF-YCKAHGPDVSHLGWLPLTCFVVYI 744
Query: 1584 VFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFG 1643
+ S+G +PW+M+GE+ P R + ++T F + FVV KT L S+G F
Sbjct: 745 LGFSVGFGPIPWLMMGEILPAKIRGAAASVATSFNWTCTFVVTKTFQDLVGSLGAHGAFW 804
Query: 1644 LYGCITAFGFVFLYIFLPETKNKTLQQIE 1672
L+G I G F+ +++PET+ KTL+ IE
Sbjct: 805 LFGAICFVGLFFVILYVPETQGKTLEDIE 833
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila yakuba (taxid: 7245) |
| >sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (555), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 135/439 (30%), Positives = 228/439 (51%), Gaps = 16/439 (3%)
Query: 1240 ATLAAGSAGAYSAVLLPQLESAN-STIPITPEDGTWIASMASLPTFIACILGSFLMEMYG 1298
++ G + AY++ L ++ N ++ +T + G+W+ + L ILG L+E G
Sbjct: 355 GSMVVGFSSAYTSPALVSMKDRNITSFEVTDQSGSWVGGIMPLAGLAGGILGGPLIEYLG 414
Query: 1299 RRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRG 1358
R+ T L PFI+ W++I+ AT V ++L GR L+GF++G++S VY+ ET +P+ RG
Sbjct: 415 RKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVYLGETVQPEVRG 474
Query: 1359 VLSALLCTAVAIGIFTAHLLGTFLHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFT 1418
L L IGI + G ++ W + + A P + + PE+P W S+G
Sbjct: 475 TLGLLPTAFGNIGILLCFVAGKYMDWSGLAFLGAALPIPFLLLMFLIPETPRWYVSRGRD 534
Query: 1419 VQAQQAFYWLRGHTAESEFEFKSML-NHAERSTITKSENMTDKKKKLEWKKNILCTEFLK 1477
+A++A WLRG A+ + E K ++ +H + M D KK LK
Sbjct: 535 DRARKALQWLRGKKADVDPELKGIIKSHQDAERHASQSAMLDLMKKAN----------LK 584
Query: 1478 PLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLR 1537
PL I L F QQ SG+N +IFYTV I ++ ++E TI++ +V + F+ L+
Sbjct: 585 PLLISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATMLID 644
Query: 1538 IFGRRPLALLSCLG---TCLSLLGVASILKFMQGLLP-SFMPVILLMFYMVFVSIGLQQL 1593
GR+ L +S + T ++L G + Q + ++P+ + Y++ S+G +
Sbjct: 645 RLGRKMLLYISDVAMIITLMTLGGFFYVKNSGQDVSQVGWLPLAAFVIYVLGFSLGFGPI 704
Query: 1594 PWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGF 1653
PW+M+GE+ P R + ++T F + F+V KT + +IGT TF ++G I G
Sbjct: 705 PWLMMGEILPGKIRGSAASVATAFNWSCTFIVTKTFADIINAIGTHGTFWMFGSICVIGL 764
Query: 1654 VFLYIFLPETKNKTLQQIE 1672
F+ ++PET+ K+L+ IE
Sbjct: 765 AFVIFYVPETQGKSLEDIE 783
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Aedes aegypti (taxid: 7159) |
| >sp|A9ZSY3|TRET1_BOMMO Facilitated trehalose transporter Tret1 OS=Bombyx mori GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (555), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 142/499 (28%), Positives = 242/499 (48%), Gaps = 17/499 (3%)
Query: 1188 NGRDCLPEVVHSLSRNVNVGTCVKRYYESKYCEQQSSYVRCDKLIAAGGPLTATLAAGSA 1247
N R+ +P V + +V T + Y +L+AA ++ G +
Sbjct: 9 NLRNSVPFVRQLSTDSVKTKTEYDNEDGTPYKSTTQKLFLWTQLLAAFAVSVGSMNVGFS 68
Query: 1248 GAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLC 1307
Y++ P + + N T+ IT E+ TW+ + L + I+G L+E GR+ T +
Sbjct: 69 SGYTS---PAVLTMNITLDITKEEITWVGGLMPLAALVGGIVGGPLIEYLGRKKTIMGTA 125
Query: 1308 IPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTA 1367
+PF +GW++I+ A V ++ AGR + G +G+ S VYI ET +P+ RG L L
Sbjct: 126 VPFTIGWMLIANAINVVMVFAGRVICGVCVGIVSLAFPVYIGETIQPEVRGALGLLPTAF 185
Query: 1368 VAIGIFTAHLLGTFLHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYW 1427
GI A L+G++L W + A P F+ TPE+P W SK +A+++ W
Sbjct: 186 GNTGILLAFLVGSYLDWSNLAFFGAAIPVPFFLLMILTPETPRWYVSKARVQEARKSLRW 245
Query: 1428 LRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFF 1487
LRG E E + + TI+++E +D+ +K+ + +L + I L
Sbjct: 246 LRGKNVNIEKEMRDL-------TISQTE--SDRTGGNAFKQ-LFSKRYLPAVMISLGLML 295
Query: 1488 VQQFSGLNTLIFYTVGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALL 1547
QQ +G+N +IFY I + V+E A+I+I +V + F+ L+ GR+ L +
Sbjct: 296 FQQLTGINAVIFYAASIFQMSGSSVDENLASIIIGVVNFISTFIATMLIDRLGRKVLLYI 355
Query: 1548 SCLGTCLSLLGVASILKFMQGLLP----SFMPVILLMFYMVFVSIGLQQLPWMMIGELFP 1603
S + +LL + + Q + ++P+ L+ Y++ SIG +PW+M+GE+ P
Sbjct: 356 SSVAMITTLLALGAYFYLKQNHIDVTAYGWLPLACLVIYVLGFSIGFGPIPWLMLGEILP 415
Query: 1604 QATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPET 1663
R + ++T F + F+V KT + +I T L+ I G +F+ F+PET
Sbjct: 416 SKIRGTAASLATGFNWTCTFIVTKTFQNIIDAIYMHGTLWLFAVICIGGLLFVIFFVPET 475
Query: 1664 KNKTLQQIEDDFKSKTMEV 1682
K K+L++IE S + V
Sbjct: 476 KGKSLEEIEMKLTSGSRRV 494
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Bombyx mori (taxid: 7091) |
| >sp|B3NSE1|TRET1_DROER Facilitated trehalose transporter Tret1 OS=Drosophila erecta GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (554), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 137/439 (31%), Positives = 225/439 (51%), Gaps = 16/439 (3%)
Query: 1240 ATLAAGSAGAYSAVLLPQLESAN-STIPITPEDGTWIASMASLPTFIACILGSFLMEMYG 1298
+L G AY++ L + N ++ +T + G+W+ + L I G L+E G
Sbjct: 405 GSLVVGFVSAYTSPALVSMTDRNITSFEVTQDAGSWVGGIMPLAGLAGGIAGGPLIEYLG 464
Query: 1299 RRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRG 1358
RR T L +PFI+ ++I+ A V ++L GRFL GF +G++S VY+ ET +P+ RG
Sbjct: 465 RRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVYLGETVQPEVRG 524
Query: 1359 VLSALLCTAVAIGIFTAHLLGTFLHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFT 1418
L L IGI + G+F++W + + A P I + PE+P W S+G
Sbjct: 525 TLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILMFLIPETPRWFVSRGRE 584
Query: 1419 VQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKP 1478
+A++A WLRG A+ E E K ++ +S+ D++ +L LKP
Sbjct: 585 ERARKALSWLRGKEADVEPELKGLM---------RSQADADRQATQNTMLELLKRNNLKP 635
Query: 1479 LAIILVFFFVQQFSGLNTLIFYTVGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRI 1538
L+I L F QQ SG+N +IFYTV I K+ ++ TI++ +V + F+ L+
Sbjct: 636 LSISLGLMFFQQLSGINAVIFYTVQIFKDAGSTIDGNICTIIVGVVNFLATFIGIVLIDR 695
Query: 1539 FGRRPLALLSCLGTCLSLLGVASILKFMQGLLPS-----FMPVILLMFYMVFVSIGLQQL 1593
GR+ L +S + L+L + + + P ++P+ + Y++ S+G +
Sbjct: 696 AGRKILLYVSNIAMILTLFVLGGFF-YCKAHGPDVSNLGWLPLTCFVIYILGFSLGFGPI 754
Query: 1594 PWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGF 1653
PW+M+GE+ P R + ++T F + FVV KT L +++G F L+G I G
Sbjct: 755 PWLMMGEILPAKIRGSAASVATAFNWSCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGL 814
Query: 1654 VFLYIFLPETKNKTLQQIE 1672
F+ I++PET+ KTL+ IE
Sbjct: 815 FFVIIYVPETQGKTLEDIE 833
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila erecta (taxid: 7220) |
| >sp|B4HNS0|TRE11_DROSE Facilitated trehalose transporter Tret1-1 OS=Drosophila sechellia GN=Tret1-1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (552), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 138/439 (31%), Positives = 225/439 (51%), Gaps = 16/439 (3%)
Query: 1240 ATLAAGSAGAYSAVLLPQLESAN-STIPITPEDGTWIASMASLPTFIACILGSFLMEMYG 1298
+L G AY++ L + N ++ +T + G+W+ + L I G L+E G
Sbjct: 406 GSLVVGFVSAYTSPALVSMTDRNITSFEVTQDAGSWVGGIMPLAALAGGITGGPLIEYLG 465
Query: 1299 RRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRG 1358
RR T L +PFI+ ++I+ A V ++L GRFL GF +G++S VY+ ET +P+ RG
Sbjct: 466 RRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVYLGETVQPEVRG 525
Query: 1359 VLSALLCTAVAIGIFTAHLLGTFLHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFT 1418
L L IGI + G+F++W + + A P I + PE+P W +G
Sbjct: 526 TLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILMFLIPETPRWFVGRGLE 585
Query: 1419 VQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKP 1478
+A++A WLRG A+ E E K ++ +S+ D++ +L LKP
Sbjct: 586 ERARKALKWLRGKEADVEPELKGLM---------RSQADADRQASRNTMLELLKLNNLKP 636
Query: 1479 LAIILVFFFVQQFSGLNTLIFYTVGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRI 1538
L+I L F QQFSG+N +IFYTV I K+ ++ TI++ IV + F+ L+
Sbjct: 637 LSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDGNLCTIIVGIVNFLATFIGIVLIDR 696
Query: 1539 FGRRPLALLSCLGTCLSLLGVASILKFMQGLLPS-----FMPVILLMFYMVFVSIGLQQL 1593
GR+ L +S + L+L + + + P ++P+ + Y++ S+G +
Sbjct: 697 AGRKILLYVSDIAMVLTLFVLGGFF-YCKANGPDVSHLGWLPLTCFVIYILGFSLGFGPI 755
Query: 1594 PWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGF 1653
PW+M+GE+ P R + ++T F + FVV KT L +++G F L+G I G
Sbjct: 756 PWLMMGEILPAKIRGSAASVATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGL 815
Query: 1654 VFLYIFLPETKNKTLQQIE 1672
F+ I++PET+ KTL+ IE
Sbjct: 816 FFVIIYVPETQGKTLEDIE 834
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila sechellia (taxid: 7238) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1693 | ||||||
| 157116848 | 491 | sugar transporter [Aedes aegypti] gi|108 | 0.272 | 0.938 | 0.475 | 1e-116 | |
| 170032192 | 493 | sugar transporter [Culex quinquefasciatu | 0.276 | 0.949 | 0.458 | 1e-115 | |
| 158294455 | 477 | AGAP005600-PA [Anopheles gambiae str. PE | 0.261 | 0.928 | 0.450 | 1e-106 | |
| 170032190 | 464 | sugar transporter [Culex quinquefasciatu | 0.268 | 0.980 | 0.448 | 1e-105 | |
| 91084567 | 450 | PREDICTED: similar to sugar transporter | 0.262 | 0.988 | 0.431 | 6e-98 | |
| 91084569 | 453 | PREDICTED: similar to sugar transporter | 0.256 | 0.960 | 0.439 | 7e-98 | |
| 307611929 | 477 | sugar transporter protein 3 [Bombyx mori | 0.259 | 0.922 | 0.415 | 1e-96 | |
| 328713674 | 461 | PREDICTED: facilitated trehalose transpo | 0.252 | 0.926 | 0.406 | 2e-95 | |
| 357624187 | 403 | putative sugar transporter [Danaus plexi | 0.235 | 0.990 | 0.411 | 2e-85 | |
| 242023522 | 542 | conserved hypothetical protein [Pediculu | 0.290 | 0.907 | 0.351 | 1e-82 |
| >gi|157116848|ref|XP_001652873.1| sugar transporter [Aedes aegypti] gi|108883401|gb|EAT47626.1| AAEL001257-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 225/473 (47%), Positives = 317/473 (67%), Gaps = 12/473 (2%)
Query: 1211 KRYYESKYCEQQSSYVRCDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPE 1270
K + ES ++ S + ++IAA GP+ A+ AAG +SA+LLPQL+S S I IT E
Sbjct: 10 KSFIESNVAAKRFSPL-TRQVIAATGPIIASAAAGMTNGFSAILLPQLQSPGSNIQITNE 68
Query: 1271 DGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGR 1330
+WIASMA LP C+LG FLME +GR++T+L+L I F +G+ ++S+A +IL GR
Sbjct: 69 QSSWIASMAPLPMAAGCLLGGFLMEKFGRKVTHLILSISFAVGFCVLSVALSYDMILVGR 128
Query: 1331 FLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFLHWKTTSAV 1390
F+TGF+ GL P A VYIAET+ P+YRG+L A + AV+ GIF +HL GT HWK +
Sbjct: 129 FITGFSCGLVGPPASVYIAETSHPRYRGILLAGVTFAVSFGIFLSHLFGTLFHWKMAALY 188
Query: 1391 CALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERST 1450
C+ F AS++ F PESP WL SKG +A+ AF WLRGH AE+ EF M+ A+ S
Sbjct: 189 CSFFMVASYVLVVFCPESPSWLLSKGHGREAEAAFRWLRGHDAEALKEFDEMV--AKYSG 246
Query: 1451 ITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISK-EVS 1509
+ N + KL K+++L EF+ PL +LVFFF QFSG+N + FY++ + K +
Sbjct: 247 SCTAGN--SQGSKLSLKESLLKREFILPLITLLVFFFTMQFSGVNIVAFYSISLMKTTIG 304
Query: 1510 PDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGL 1569
++NEY A +++D+VRV+ + C LL++FGRRPLA+LS GT +SL+G+ SI + Q
Sbjct: 305 SNINEYLAMLIVDLVRVITSLFACVLLKMFGRRPLAMLSGAGTTISLIGL-SIFLYFQTS 363
Query: 1570 LP-----SFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFV 1624
+P S+M +I L+ Y++F+ IGL LPW M GE+FP ATR +G+G+++ F F+ FV
Sbjct: 364 IPVYQNLSWMSLIFLISYIIFIGIGLFPLPWCMSGEVFPIATRGIGTGLTSSFNFVCFFV 423
Query: 1625 VVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQIEDDFKS 1677
V+KTGP LF ++GT TF +YG I+ G + LY+ LPETKN+TLQ+IED FKS
Sbjct: 424 VIKTGPTLFSTVGTNGTFMIYGIISLIGTLVLYMILPETKNRTLQEIEDAFKS 476
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170032192|ref|XP_001843966.1| sugar transporter [Culex quinquefasciatus] gi|167872082|gb|EDS35465.1| sugar transporter [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 226/493 (45%), Positives = 319/493 (64%), Gaps = 25/493 (5%)
Query: 1215 ESKYCEQQSSYVR----CDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPE 1270
+ E Q S R +++AA GP+ ++ AAG +SA+LLPQL+ S+I IT +
Sbjct: 9 DKSLIESQVSAARFSPLTRQVLAATGPIISSAAAGMTNGFSAILLPQLQRPESSIQITSD 68
Query: 1271 DGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGR 1330
+WIASMA LP C+LG FLME +GR++T+LVL + F +G+ ++S+A+ +ILAGR
Sbjct: 69 QSSWIASMAPLPMAAGCLLGGFLMEKFGRKVTHLVLNVSFAVGFCVLSMASSYDMILAGR 128
Query: 1331 FLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFLHWKTTSAV 1390
F+TGF+ GL P A VYIAET+ PKYRG+L A + AV+ GIF +HL GTF HWK +
Sbjct: 129 FITGFSCGLIGPPASVYIAETSHPKYRGILLAGVTFAVSFGIFISHLFGTFFHWKMAALY 188
Query: 1391 CALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERST 1450
C+ F S++F PESP WL SKG T +A+ AF WLRGH A++ EF+ M ++
Sbjct: 189 CSFFMAVSYLFVALCPESPSWLLSKGKTREAEAAFRWLRGHDADALKEFQDMASN----- 243
Query: 1451 ITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISK-EVS 1509
S ++ K +NI EF+ PL I+LVFFF QFSG+N + FY++ + + +
Sbjct: 244 --YSPAGESQEPKPTLLQNISKKEFVLPLLILLVFFFTMQFSGVNIVAFYSISLMQTTIG 301
Query: 1510 PDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGL 1569
++NEY A +++D+VRV+ + V C LLR+ GRRPLA+LS GT +SL G+ SI + Q
Sbjct: 302 SNINEYLAMLIVDLVRVITSLVACMLLRVVGRRPLAMLSGCGTTISLAGL-SIFLYFQTS 360
Query: 1570 LP-----SFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFV 1624
+P S+M +I L+ Y++FV IGL LPW M GE+FP ATR +GSG+++ F F++ FV
Sbjct: 361 IPVYQNLSWMSLIFLISYIIFVGIGLFPLPWCMSGEIFPVATRGIGSGLTSSFNFISFFV 420
Query: 1625 VVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQIEDDFK-------S 1677
V+KTGP LF + GT TF +YG I+ G + LY+ LPETKN+TLQQIE+ F+ S
Sbjct: 421 VIKTGPSLFAAFGTNGTFMIYGIISLLGTLVLYMILPETKNRTLQQIEETFRSGWRTSES 480
Query: 1678 KTMEVGTEDEKTA 1690
KT G ++ A
Sbjct: 481 KTPAAGPTEQSKA 493
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158294455|ref|XP_315613.4| AGAP005600-PA [Anopheles gambiae str. PEST] gi|157015573|gb|EAA11457.4| AGAP005600-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 395 bits (1016), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/453 (45%), Positives = 291/453 (64%), Gaps = 10/453 (2%)
Query: 1231 LIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILG 1290
++AA GP+ ++ AAG +SA+LLPQL+ S + I+ + +WIASMA LP + CILG
Sbjct: 1 VLAASGPIISSAAAGMTNGFSAILLPQLQQPGSKLSISEDQASWIASMAPLPMAVGCILG 60
Query: 1291 SFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAE 1350
LME GR+ +L+L + F +GW ++S+A ILAGRF+TG + GL P A VYIAE
Sbjct: 61 GLLMESCGRKSAHLILNVSFAVGWCVLSMAGSYPQILAGRFITGLSCGLVGPPASVYIAE 120
Query: 1351 TTEPKYRGVLSALLCTAVAIGIFTAHLLGTFLHWKTTSAVCALFPCASFIFAYFTPESPP 1410
T++P+YRG+L A + AV+ GI AHL GTF W+T + +C+LF +++ +PESP
Sbjct: 121 TSDPRYRGILLAGVTFAVSGGILLAHLFGTFFRWQTAALLCSLFMIVAYLLMLVSPESPA 180
Query: 1411 WLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNI 1470
WL ++G V+A+ +F WLRG+ S EF +M+ E K N +
Sbjct: 181 WLLARGARVEAESSFRWLRGYDPASRQEFDAMVARTESD--DKKANAAQVDSSADSSSPY 238
Query: 1471 LCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEV--SPDVNEYTATIVIDIVRVVM 1528
EFL PLA +LVFF QFSG+N + FY++ + K S +NEY A +++D+VRVV
Sbjct: 239 RRREFLMPLATLLVFFATMQFSGVNIVAFYSIALMKTTIGSDSLNEYLAMLIVDLVRVVT 298
Query: 1529 AFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLP-----SFMPVILLMFYM 1583
+ V C LLR GRRPLA+ S +GT +SL+G+ SI + Q +P S++ ++ L+ Y+
Sbjct: 299 SLVACILLRSVGRRPLAMASGVGTTVSLIGL-SIFLYFQTSIPLYRNYSWLSLVFLISYI 357
Query: 1584 VFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFG 1643
VFV IGL LPW M GE+FP ATR LGSG+++ F F+ F V+KTGP LF ++G TF
Sbjct: 358 VFVGIGLFPLPWCMTGEVFPVATRGLGSGLTSSFNFVCFFAVIKTGPTLFATVGINGTFL 417
Query: 1644 LYGCITAFGFVFLYIFLPETKNKTLQQIEDDFK 1676
+YG I+ G + LY+ LPETKN+TLQ+IE+ F+
Sbjct: 418 VYGVISLLGTLLLYVILPETKNRTLQEIEEQFR 450
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170032190|ref|XP_001843965.1| sugar transporter [Culex quinquefasciatus] gi|167872081|gb|EDS35464.1| sugar transporter [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 210/468 (44%), Positives = 302/468 (64%), Gaps = 13/468 (2%)
Query: 1230 KLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACIL 1289
++ AA GP+ + A G +SA+LLPQL+ +S I I E +WIASMA L C++
Sbjct: 5 QIFAATGPIITSAAGGMTVGFSAILLPQLQKPDSPIQIDSEQSSWIASMAPLLMAAGCLV 64
Query: 1290 GSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIA 1349
G +ME +GR++T LVL + F G+ ++S+A+ ILAGRF+TGFA GL + VYIA
Sbjct: 65 GGLMMERFGRKVTQLVLNVTFAAGFCLLSMASSYETILAGRFMTGFASGLVGQLTSVYIA 124
Query: 1350 ETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFLHWKTTSAVCALFPCASFIFAYFTPESP 1409
ET++PKYRG+LSA AV+ G+ +HL GTF+HWK + C+ F S++F F+PESP
Sbjct: 125 ETSDPKYRGILSAGFSFAVSFGVLISHLFGTFMHWKIAALCCSFFMVVSYVFVVFSPESP 184
Query: 1410 PWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKN 1469
PWL SKG + +A++AF WLRG E+ EF M + K N K K +N
Sbjct: 185 PWLLSKGRSSEAEEAFSWLRGDDTEAIKEFNDM--------VFKYTNGDSLKTKPTVLQN 236
Query: 1470 ILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEV-SPDVNEYTATIVIDIVRVVM 1528
+ EF +PL I+L+FFFV QF+G++ + FY+V I + ++NEY A I++D+VRV+
Sbjct: 237 LSTPEFYRPLMILLIFFFVSQFAGVHIVSFYSVSIIHSILGSNMNEYLAMIIVDVVRVIA 296
Query: 1529 AFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLP---SFMPVILLMFYMVF 1585
+ + C LL++ RRPLA+ S GT +SL G++ L F Q +P +++ ++ L+ Y+VF
Sbjct: 297 SLIPCVLLKVTRRRPLAMWSGCGTTISLAGLSIFLHF-QTRIPQQLTWISLVFLLSYIVF 355
Query: 1586 VSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLY 1645
++IGL LPW M GE FPQ TRE+GS ++T F FL+ FVV+KTGPLLF S+GT F +Y
Sbjct: 356 INIGLFPLPWCMAGETFPQVTREIGSAMTTSFNFLSFFVVIKTGPLLFDSVGTDGAFMIY 415
Query: 1646 GCITAFGFVFLYIFLPETKNKTLQQIEDDFKSKTMEVGTEDEKTAALK 1693
G I+ G + LY LPETK++TLQ+IE+ FK + V +D +K
Sbjct: 416 GGISLVGTLVLYAILPETKDRTLQEIEEAFKLRWRTVDGDDASGQQVK 463
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91084567|ref|XP_973731.1| PREDICTED: similar to sugar transporter [Tribolium castaneum] gi|270008888|gb|EFA05336.1| hypothetical protein TcasGA2_TC015500 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 366 bits (940), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 201/466 (43%), Positives = 296/466 (63%), Gaps = 21/466 (4%)
Query: 1215 ESKYCEQQSSYVRCDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTW 1274
++K Q+ R +++ A GPL +T+ G +SAVLLPQL N+T+ +P D +W
Sbjct: 2 KTKIAILQTPLTR--QILVATGPLLSTIGLGMTSGFSAVLLPQLH--NTTLVASPNDASW 57
Query: 1275 IASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTG 1334
IASMA+LP C+ G FLME +GR+ T ++ IP ++GW++I ++++W+IL GRFLTG
Sbjct: 58 IASMAALPMAFGCVFGGFLMENFGRKTTQILTTIPSLIGWLLIGFSSDIWMILTGRFLTG 117
Query: 1335 FALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFLHWKTTSAVCALF 1394
GL P VYI+ET+EP++RG L A + A+A+G+F H LGTFL W+TTS + +
Sbjct: 118 LCGGLLGPSTGVYISETSEPRFRGFLLASISLAMALGLFFVHFLGTFLTWRTTSGLSLIL 177
Query: 1395 PCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKS 1454
P S + PESP WLA KG +AQ++F+W RG + ++ E ML + T+
Sbjct: 178 PVLSLVVLNLVPESPSWLAKKGRNDEAQKSFFWCRGESDQARKELTEMLQRYKNQTLE-- 235
Query: 1455 ENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGI-SKEVSPDVN 1513
T+K K ++ EFLKPLAII+VF Q++G+N L FYTV I K + P ++
Sbjct: 236 ---TEKIK-------LISGEFLKPLAIIVVFIVTNQWAGVNALTFYTVTIMGKTLGPGLD 285
Query: 1514 EYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVAS---ILKFMQGLL 1570
EY A +V+D++RV M+ TC +++ GRRPLAL+S GT SL +++ +F++
Sbjct: 286 EYLAMLVVDLIRVAMSIATCFIMKRIGRRPLALISGFGTFTSLFLLSAYSFTTRFVRLDF 345
Query: 1571 PSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGP 1630
P +P+ L+ Y+ F++IG LPW M+GE+FPQ R +GS +S+ AF+ F VVKT P
Sbjct: 346 P-LVPMGALVAYITFITIGFVPLPWAMMGEVFPQTHRNVGSSVSSFMAFVAFFSVVKTSP 404
Query: 1631 LLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQIEDDFK 1676
+F +GT TF +YG + FG +F + FLPETK+KTL +IED+FK
Sbjct: 405 AMFDCLGTDGTFMVYGAVAFFGTIFNWFFLPETKDKTLGEIEDEFK 450
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91084569|ref|XP_973763.1| PREDICTED: similar to sugar transporter [Tribolium castaneum] gi|270008889|gb|EFA05337.1| hypothetical protein TcasGA2_TC015501 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 366 bits (939), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 197/448 (43%), Positives = 291/448 (64%), Gaps = 13/448 (2%)
Query: 1234 AGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFL 1293
A GP+ T + G +SA+LLPQL S +++ I E +WIASMA+LP + CILG L
Sbjct: 10 ALGPILITTSLGMTEGFSAILLPQLNS--TSLQIDEETSSWIASMAALPMALGCILGGIL 67
Query: 1294 MEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTE 1353
ME GR+ T+++ C+P ++GW+I+ A+ V +IL GRFLTGF +GL P VY++ET+E
Sbjct: 68 MEKIGRKATHMLTCLPCVIGWLILYFASSVDMILVGRFLTGFCVGLLGPPTGVYMSETSE 127
Query: 1354 PKYRGVLSALLCTAVAIGIFTAHLLGTFLHWKTTSAVCALFPCASFIFAYFTPESPPWLA 1413
PK+RG L A + A+A+G+F +HL+GTF++W+ T+ C FP +F F PESP WLA
Sbjct: 128 PKFRGFLLASISFAIALGLFLSHLIGTFVNWQDTALTCCSFPVICLVFMGFAPESPTWLA 187
Query: 1414 SKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCT 1473
+G +A++AF W RG + E+ E + ++N R TI E + K E K++
Sbjct: 188 KRGRLEEAKRAFVWCRGQSEEAVNELEVLIN---RQTILNQE---ETKSFCEIIKDLKRP 241
Query: 1474 EFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPDVNEYTATIVIDIVRVVMAFVT 1532
EF+KPL II+VFF Q+SGLN + FY+V I ++ + + +EY A ++ID +RV M+ +
Sbjct: 242 EFIKPLVIIVVFFVTCQWSGLNAITFYSVTIIQQTLGGNFDEYLAMLIIDSIRVFMSVLA 301
Query: 1533 CGLLRIFGRRPLALLSCLGTCLSLLGVASI---LKFMQGL-LPSFMPVILLMFYMVFVSI 1588
C LL+ GRRPLA++S +GT +SL ++S +KF + + +F+P++ L+ Y+ F++I
Sbjct: 302 CVLLKKLGRRPLAIISGVGTFVSLFILSSFTFAVKFYPAISVYTFIPLVSLITYVSFITI 361
Query: 1589 GLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCI 1648
G LPW M+GE+FP A R +GSGIS A++ F VVKT P + G TF +YG +
Sbjct: 362 GFVPLPWTMMGEVFPLANRGIGSGISALMAYVAFFSVVKTTPAMIQHFGLEGTFFIYGML 421
Query: 1649 TAFGFVFLYIFLPETKNKTLQQIEDDFK 1676
G + L +FLPETK+K L QIED+FK
Sbjct: 422 ALVGTIILILFLPETKDKALYQIEDNFK 449
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307611929|ref|NP_001182631.1| sugar transporter protein 3 [Bombyx mori] gi|306411085|gb|ADM86147.1| sugar transporter protein 3 [Bombyx mori] | Back alignment and taxonomy information |
|---|
Score = 362 bits (929), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 186/448 (41%), Positives = 280/448 (62%), Gaps = 8/448 (1%)
Query: 1232 IAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGS 1291
+AA P+ T AAG +SA+LLPQLE IP E +WIASMA+LP C++
Sbjct: 30 LAASAPILLTFAAGLTSGFSAILLPQLEIEAGPIPADEETTSWIASMAALPMAPGCLISG 89
Query: 1292 FLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAET 1351
++ E +GRR + ++C P ++GW++ ++A + ++L GRF TG +GL P+ VYI ET
Sbjct: 90 WMFERFGRRKSQFIVCAPLLLGWILTAVANNLTLMLCGRFFTGLCVGLIGPLGPVYIGET 149
Query: 1352 TEPKYRGVLSALLCTAVAIGIFTAHLLGTFLHWKTTSAVCALFPCASFIFAYFTPESPPW 1411
+EPKYRG A + A+A+GI AH+LGTF+ W+ T+ +CALFP + + F PESP W
Sbjct: 150 SEPKYRGFFLAAISLAIALGIIFAHILGTFISWQWTAVICALFPILNIVLLIFVPESPTW 209
Query: 1412 LASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNIL 1471
L SKG + + +YWLRG++ E++ E K +++ R + T K K L +K
Sbjct: 210 LISKGRIEEGSKVYYWLRGYSDEAKDELKGIIDC--RLARDAAPVETWKDKVLYFKS--- 264
Query: 1472 CTEFLKPLAIILVFFFVQQFSGLNTLIFYTVG-ISKEVSPDVNEYTATIVIDIVRVVMAF 1530
E +KPL I+++FF QF+G N FY++G I K V +++Y A V+D++R++ +
Sbjct: 265 -PELIKPLIIMIIFFATCQFAGTNAFAFYSIGIIQKAVDTSIDKYVAMFVMDLLRLIASV 323
Query: 1531 VTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGL 1590
V C + + +GRRPL +S T +S++G++ L +++ +++P+ LM Y+ +SIGL
Sbjct: 324 VACVICKQYGRRPLCFISGGLTTISMVGLSMFL-YLKPENMAWIPLSCLMLYICAISIGL 382
Query: 1591 QQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITA 1650
LPWMM GE+FP R LGSGIS+ AF+ F+VVKT P + +G TF YG +
Sbjct: 383 VPLPWMMCGEIFPTKVRGLGSGISSAMAFVCFFIVVKTAPGMMTYLGEVFTFSFYGTVAF 442
Query: 1651 FGFVFLYIFLPETKNKTLQQIEDDFKSK 1678
FG + L+ LPETK K+LQ+IE+ FKSK
Sbjct: 443 FGTIILFFALPETKGKSLQEIEEKFKSK 470
|
Source: Bombyx mori Species: Bombyx mori Genus: Bombyx Family: Bombycidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328713674|ref|XP_003245148.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 358 bits (918), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 188/463 (40%), Positives = 273/463 (58%), Gaps = 36/463 (7%)
Query: 1229 DKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACI 1288
++ AA GPL TL +G +SAVLLPQL+ STI I+ +WIASMA+LP +
Sbjct: 12 KQMFAASGPLIVTLGSGMTVGFSAVLLPQLKDDRSTIKISSHQESWIASMAALPMAAGSV 71
Query: 1289 LGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYI 1348
LG M+ GR+ TNL++C+PF++GW +S+AT V + GR +TG + GL P VYI
Sbjct: 72 LGGMAMDRLGRKTTNLLICVPFVLGWTAVSMATGVTGVYVGRLMTGLSTGLLGPPTAVYI 131
Query: 1349 AETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFLHWKTTSAVCALFPCASFIFAYFTPES 1408
AE TE +YRG A++ +V+ GI H +GTFL W+ SA+C+ P A ++ +FTPES
Sbjct: 132 AEVTEQRYRGAALAMISFSVSAGILAVHTMGTFLGWRLVSALCSAVPFAGYVLIWFTPES 191
Query: 1409 PPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKK 1468
P WL +Q ++ +HA +K D + L K
Sbjct: 192 PVWLREDEERRHRRQT---------------AAVCDHASGGVPSKPPPEIDSQPPLSTVK 236
Query: 1469 NIL--C---TEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPDVNEYTATIVIDI 1523
C FL PLA++ FFFVQQFSG+N + FY+V + K V PD+NEY T+ +D+
Sbjct: 237 PTARQCFSRPSFLGPLAVLSTFFFVQQFSGVNAVAFYSVTLLKRVGPDLNEYHCTMALDV 296
Query: 1524 VRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILK----------------FMQ 1567
+R+ ++ + CGL + +GRRPLA++S +GTC+SLL +A+ ++
Sbjct: 297 IRLAVSVLACGLTKRYGRRPLAVVSAVGTCVSLLCLAASVRDSGTPATAGSVAVHAVPAP 356
Query: 1568 GLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVK 1627
S PV+ ++ YMVFV+IGL LPW+M GE+FP RELGSG+STCF F+ + V++
Sbjct: 357 AATASLAPVMSIVAYMVFVNIGLVPLPWIMSGEMFPGYCRELGSGLSTCFGFVMFYAVIQ 416
Query: 1628 TGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQ 1670
P L +IGT TF ++G ++ G +FLY+ LPETKNK+++
Sbjct: 417 ISPYLLTNIGTSITFYIFGTVSGVGALFLYLCLPETKNKSMED 459
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357624187|gb|EHJ75059.1| putative sugar transporter [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 325 bits (832), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 168/408 (41%), Positives = 254/408 (62%), Gaps = 9/408 (2%)
Query: 1278 MASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFAL 1337
MA+LP C++G +LME +GRR + ++C PF++GW++I+ A + +IL GRF TG +
Sbjct: 1 MAALPMAPGCLIGGWLMEKFGRRNAHYMVCAPFLLGWILIACANNLALILLGRFFTGLCV 60
Query: 1338 GLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFLHWKTTSAVCALFPCA 1397
GL P+ V+I+ETT P+YRG+ A + A+A+GIF AHL+GT++HW+ T+ +C FP
Sbjct: 61 GLIGPLGPVFISETTSPQYRGIFLAGISLAIAVGIFVAHLIGTYIHWQWTAVICCFFPIM 120
Query: 1398 SFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENM 1457
S + PESP WL +KG ++F+WLRG+ E++ E K ++ E+ SE +
Sbjct: 121 SVVLLSMIPESPTWLIAKGQLEDGVKSFHWLRGYDEEAKNELKGIV---EKQKAQDSEPV 177
Query: 1458 TDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVG-ISKEVSPDVNEYT 1516
++K+ K+ LKPL I+++FF QFSG+N + FY++ I + V ++ Y
Sbjct: 178 PTLREKINSLKS---PTLLKPLFIMIIFFVTCQFSGVNAVAFYSIEIIERAVGTGIDHYM 234
Query: 1517 ATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLP--SFM 1574
A + ID +R M+ V C + + FGRRPL ++S + T LS++ ++ L + G S++
Sbjct: 235 AMLGIDSLRTFMSVVACVICKKFGRRPLCMISGIFTALSMVALSMFLYWADGKPNNLSWI 294
Query: 1575 PVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFL 1634
P+ LM Y+ +SIGL LPWMM GELFP R LGSGIS+ F++ F+VVKT P +
Sbjct: 295 PLSCLMLYICAISIGLVPLPWMMCGELFPTRVRGLGSGISSATTFVSFFIVVKTAPGMMS 354
Query: 1635 SIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQIEDDFKSKTMEV 1682
++G TF YG + G LY LPETK K+LQ+IED FKS + +
Sbjct: 355 NLGEVFTFLFYGIVALVGTGILYFVLPETKGKSLQEIEDKFKSNKISI 402
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242023522|ref|XP_002432181.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517578|gb|EEB19443.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 315 bits (807), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 179/509 (35%), Positives = 283/509 (55%), Gaps = 17/509 (3%)
Query: 1186 RWNGRDCLPEVVHSLSRNVNVGTCVKRYYESKYCEQQSSYVRCDKLIAAGGPLTATLAAG 1245
R G C+ E L N +K+ + + ++ AA T+ G
Sbjct: 37 RSQGDICVVESKIPLVENGLAAKPIKQDASVGFLSKSERGSAFRQVFAAFAANIGTVNTG 96
Query: 1246 SAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLV 1305
+SAV+LPQL+S+NSTIPI E +W+AS++S+ T I CILG +LM++ GRR+T +V
Sbjct: 97 LVFGFSAVVLPQLQSSNSTIPINEEQASWVASLSSISTPIGCILGGYLMDLIGRRMTLIV 156
Query: 1306 LCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLC 1365
P I+GW++I A V++I GR L GF G+ A VY E T+P RG+L AL
Sbjct: 157 TEFPLIIGWLLIFSANSVYMIYGGRLLVGFGSGMVGAPARVYTGEVTQPHLRGMLLALSS 216
Query: 1366 TAVAIGIFTAHLLGTFLHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAF 1425
V++G+ +LLG FL W + + A P + + +F PE+P +L S+ T +++A
Sbjct: 217 VGVSMGVLIEYLLGHFLTWHILAGISACVPVLALVLLFFLPETPNYLVSQNKTEDSRKAL 276
Query: 1426 YWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVF 1485
LRG T + E K + + ++++ + KK++ K + LKP AI++ +
Sbjct: 277 IKLRGSTCNVDAELKILTDFSKKNNV----------KKIKGFKALTSPTALKPFAILVTY 326
Query: 1486 FFVQQFSGLNTLIFYTVGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLA 1545
F QFSG+NT+ FY V + ++ VN+Y AT+++ +VRV+ V C LR GRRPL
Sbjct: 327 FMFYQFSGVNTITFYAVEVFQQSGAQVNKYLATVILGLVRVIFTVVACISLRKCGRRPLT 386
Query: 1546 LLSCLGTCLSLLGVASILKFMQ-----GLLP--SFMPVILLMFYMVFVSIGLQQLPWMMI 1598
++S +G L++ G+ + + ++ G P +++PV + + + ++G +PW+MI
Sbjct: 387 MISGVGCSLTMFGLGTYMYYLNNCELAGETPQNTWIPVACIFLFAIACTLGFLVVPWVMI 446
Query: 1599 GELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYI 1658
GELFP R + G++TC A L +F+VVKT P L+ I F LYG ++ G +F Y
Sbjct: 447 GELFPIQVRGIFGGMTTCCAHLFVFIVVKTYPFLYHLIDRFGCFWLYGSVSLVGCIFFYF 506
Query: 1659 FLPETKNKTLQQIEDDFKSKTMEVGTEDE 1687
+PETK KTLQ+IED F + + + E
Sbjct: 507 CVPETKGKTLQEIEDHFAGRGNALSRKRE 535
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1693 | ||||||
| UNIPROTKB|A9ZSY2 | 502 | Tret1 "Facilitated trehalose t | 0.240 | 0.810 | 0.320 | 4.4e-54 | |
| UNIPROTKB|B0WC46 | 517 | Tret1 "Facilitated trehalose t | 0.236 | 0.773 | 0.308 | 1.9e-53 | |
| FB|FBgn0033644 | 488 | Tret1-2 "Trehalose transporter | 0.235 | 0.817 | 0.314 | 6.6e-53 | |
| UNIPROTKB|A5LGM7 | 504 | Tret1 "Facilitated trehalose t | 0.240 | 0.807 | 0.302 | 4.7e-52 | |
| UNIPROTKB|B4HNS1 | 488 | Tret1-2 "Facilitated trehalose | 0.235 | 0.817 | 0.312 | 6e-52 | |
| UNIPROTKB|B4QBN3 | 488 | Tret1-2 "Facilitated trehalose | 0.235 | 0.817 | 0.312 | 9.8e-52 | |
| UNIPROTKB|B4P624 | 856 | Tret1 "Facilitated trehalose t | 0.235 | 0.466 | 0.314 | 2.9e-51 | |
| UNIPROTKB|B4HNS0 | 857 | Tret1-1 "Facilitated trehalose | 0.235 | 0.465 | 0.314 | 4.9e-51 | |
| FB|FBgn0050035 | 857 | Tret1-1 "Trehalose transporter | 0.235 | 0.465 | 0.314 | 8.2e-51 | |
| UNIPROTKB|B4MYA4 | 872 | Tret1 "Facilitated trehalose t | 0.236 | 0.458 | 0.317 | 4.4e-50 |
| UNIPROTKB|A9ZSY2 Tret1 "Facilitated trehalose transporter Tret1" [Apis mellifera ligustica (taxid:7469)] | Back alignment and assigned GO terms |
|---|
Score = 572 (206.4 bits), Expect = 4.4e-54, P = 4.4e-54
Identities = 135/421 (32%), Positives = 211/421 (50%)
Query: 1259 ESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIIS 1318
++ +T +T + WI S+ L I I+G +E GRR T L +PF+ GW+ I+
Sbjct: 72 DNTTATFEVTMDMAMWIGSIMPLSALIGGIIGGPCIEYIGRRNTILSTALPFLAGWLFIA 131
Query: 1319 LATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLL 1378
LAT V +IL GR + GF +G++S VY+ E+ +P+ RG L L GI
Sbjct: 132 LATNVAMILVGRSICGFCVGVASLSLPVYLGESIQPEVRGSLGLLPTVFGNSGILMCFTA 191
Query: 1379 GTFLHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFE 1438
G +L W+ + + A P I + PE+P W SKG +A+++ WLRG TA+ E
Sbjct: 192 GMYLAWRNLALLGACIPIIFLILMFLIPETPRWYISKGKIKEARKSLQWLRGKTADISEE 251
Query: 1439 FKSMLN-HAERSTITKSENMTDXXXXXXXXXNILCTEFLKPLAIILVFFFVQQFSGLNTL 1497
S+ H E I T+ N +KP+ I L F QQFSG+N +
Sbjct: 252 LDSIQKMHIESERIA-----TEGALIELFRKN-----HIKPVFISLGLMFFQQFSGINAV 301
Query: 1498 IFYTVGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPXXXXXXXXXXXXXX 1557
IFYTV I K+ V+E +TI++ +V + FV ++ GR+
Sbjct: 302 IFYTVQIFKDSGSTVDENLSTIIVGLVNFISTFVAAMIIDRLGRKMLLYISSILMCITLF 361
Query: 1558 XVAS---ILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGIS 1614
+ + + M ++P++ L+ Y++ S G +PW+M+GE+ P R + ++
Sbjct: 362 TFGTFFYVKELMDVTAFGWIPLMSLIVYVIGFSFGFGPIPWLMMGEILPVKIRGTAASVA 421
Query: 1615 TCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQIEDD 1674
T F + FVV KT L L IG TF L+G + A F+F+ I +PET+ ++L++IE
Sbjct: 422 TAFNWSCTFVVTKTYEDLVLHIGPYGTFWLFGTLVAVAFIFVIICVPETRGRSLEEIERR 481
Query: 1675 F 1675
F
Sbjct: 482 F 482
|
|
| UNIPROTKB|B0WC46 Tret1 "Facilitated trehalose transporter Tret1" [Culex quinquefasciatus (taxid:7176)] | Back alignment and assigned GO terms |
|---|
Score = 566 (204.3 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 128/415 (30%), Positives = 213/415 (51%)
Query: 1263 STIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATE 1322
++ +T + G+W+ + L + ILG L+E GR+ T L PFI+ W++I+ AT
Sbjct: 90 TSFEVTDQSGSWVGGIMPLAGLVGGILGGPLIEYLGRKNTILATATPFIISWLLIACATH 149
Query: 1323 VWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVA-IGIFTAHLLGTF 1381
V ++L GR L+GF++G++S VY+ ET +P+ RG L LL TA IGI + G +
Sbjct: 150 VAMVLVGRALSGFSVGVASLSLPVYLGETVQPEVRGTLG-LLPTAFGNIGILLCFVAGNY 208
Query: 1382 LHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKS 1441
+ W + + A P I + PE+P W S+G +A++A WLRG A+ + E K
Sbjct: 209 MDWSELAFLGATLPVPFLILMFLIPETPRWYVSRGRDDRARKALQWLRGKKADVDPELKG 268
Query: 1442 MLNHAERSTITKSENMTDXXXXXXXXXNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYT 1501
++ KS + ++L LKPL I L F QQ SG+N +IFYT
Sbjct: 269 II---------KSHQDAERHASQSAMLDLLKKTNLKPLLISLGLMFFQQLSGINAVIFYT 319
Query: 1502 VGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPXXXXXXXXXXXXXXXVAS 1561
V I ++ ++E TI++ +V + F+ L+ GR+ +
Sbjct: 320 VQIFQDAGSTIDENLCTIIVGVVNFIATFIATLLIDRLGRKMLLYISDIAMIITLMTLGG 379
Query: 1562 I--LKFMQGLLP--SFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCF 1617
+K G + ++P+ + +++ S+G +PW+M+GE+ P R + ++T F
Sbjct: 380 FFYVKNNGGDVSHIGWLPLASFVIFVLGFSLGFGPIPWLMMGEILPGKIRGSAASVATAF 439
Query: 1618 AFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQIE 1672
+ FVV KT + SIGT F ++G + G VF+ +++PET+ K+L+ IE
Sbjct: 440 NWSCTFVVTKTFADIIASIGTHGAFWMFGSVCVVGLVFVIMYVPETQGKSLEDIE 494
|
|
| FB|FBgn0033644 Tret1-2 "Trehalose transporter 1-2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 561 (202.5 bits), Expect = 6.6e-53, P = 6.6e-53
Identities = 131/416 (31%), Positives = 211/416 (50%)
Query: 1263 STIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATE 1322
++ +T + G+W+ + L I G L+E GRR T L +PFI+ ++I+ A
Sbjct: 62 TSFEVTKDAGSWVGGIMPLAALAGGITGGPLIEYLGRRSTILATAVPFIVSSLLIACAVN 121
Query: 1323 VWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVA-IGIFTAHLLGTF 1381
V +IL GRFLTGF +G++S VY+ ET +P+ RG L LL TA+ IGI ++ G+F
Sbjct: 122 VIMILCGRFLTGFCVGIASLSLPVYLGETLQPEVRGTLG-LLPTALGNIGILVCYVAGSF 180
Query: 1382 LHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKS 1441
++W + + A P I PE+P W ++G +A++A WLRG A+ E E K
Sbjct: 181 MNWSMLAFLGAALPVPFLILMIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKE 240
Query: 1442 MLNHAERSTITKSENMTDXXXXXXXXXNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYT 1501
++ +S+ D + LKPL+I L F QQFSG+N +IFYT
Sbjct: 241 LM---------QSQADADRQATQNTCLELFKRNNLKPLSISLGLMFFQQFSGINAVIFYT 291
Query: 1502 VGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPXXXXXXXXXXXXXXXVAS 1561
V I K+ ++ +TI++ +V F+ L+ GR+ +
Sbjct: 292 VQIFKDAGSTIDSNLSTIIVGVVNFFATFMGIILIDRLGRKILLYVSDIAMIVTLSILGG 351
Query: 1562 ILKFMQGLLPS-----FMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTC 1616
+ + P ++P+ + Y++ S+G +PW+M+GE+ P R + + T
Sbjct: 352 FF-YCKAHGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTA 410
Query: 1617 FAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQIE 1672
F + FVV KT L +++G F L+G I G F+ IF+PET+ K+L++IE
Sbjct: 411 FNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICIVGLFFVIIFVPETRGKSLEEIE 466
|
|
| UNIPROTKB|A5LGM7 Tret1 "Facilitated trehalose transporter Tret1" [Polypedilum vanderplanki (taxid:319348)] | Back alignment and assigned GO terms |
|---|
Score = 553 (199.7 bits), Expect = 4.7e-52, P = 4.7e-52
Identities = 129/426 (30%), Positives = 211/426 (49%)
Query: 1256 PQLESA-NSTIP---ITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFI 1311
P L S N+TI +T ++ +W+ + L I G +E GR+ T L +PFI
Sbjct: 66 PALVSMQNTTITSFKVTEQEASWVGGIMPLAGLAGGIAGGPFIEYLGRKNTILATAVPFI 125
Query: 1312 MGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVA-I 1370
+ W++I+ A +W++LAGR L+GF +G++S VY+ ET +P+ RG L LL TA I
Sbjct: 126 VAWLLIAFANSIWMVLAGRALSGFCVGIASLSLPVYLGETVQPEVRGTLG-LLPTAFGNI 184
Query: 1371 GIFTAHLLGTFLHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRG 1430
GI + G +++W + + ++ P + PE+P W ++G +A++A WLRG
Sbjct: 185 GILICFVAGKYVNWSGLAFIGSILPIPFMVLTLLIPETPRWFVTRGREERARKALQWLRG 244
Query: 1431 HTAESEFEFKSMLNHAERSTITKSENMTDXXXXXXXXXNILCTEFLKPLAIILVFFFVQQ 1490
A+ E E K I KS + +++ LKPL I L F QQ
Sbjct: 245 KKADVEPELKG---------IVKSHCEAERHASQNAIFDLMKRSNLKPLLIALGLMFFQQ 295
Query: 1491 FSGLNTLIFYTVGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPXXXXXXX 1550
SG+N +IFYTV I K+ ++E TI++ +V F L+ GR+
Sbjct: 296 LSGINAVIFYTVSIFKDAGSTIDENLCTIIVGVVNFGATFFATVLIDRLGRKILLYISEV 355
Query: 1551 XXXXXXXXVASILKFMQ-GLLPS---FMPVILLMFYMVFVSIGLQQLPWMMIGELFPQAT 1606
+ + + G S ++P+ + Y++ S G+ +PW+M+GE+ P
Sbjct: 356 AMVITLLTLGTFFYYKNSGNDVSNIGWLPLASFVIYVIGFSSGVGPIPWLMLGEILPGKI 415
Query: 1607 RELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNK 1666
R + ++T F + F+V KT + +IG F +G I G F+ F+PET+ K
Sbjct: 416 RGSAASVATGFNWTCTFIVTKTFADIVAAIGNHGAFWFFGVICLIGLFFVIFFVPETQGK 475
Query: 1667 TLQQIE 1672
+L++IE
Sbjct: 476 SLEEIE 481
|
|
| UNIPROTKB|B4HNS1 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila sechellia (taxid:7238)] | Back alignment and assigned GO terms |
|---|
Score = 552 (199.4 bits), Expect = 6.0e-52, P = 6.0e-52
Identities = 130/416 (31%), Positives = 210/416 (50%)
Query: 1263 STIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATE 1322
++ +T + G+W+ + L I G L+E GRR T L +PFI+ ++I+ A
Sbjct: 62 TSFEVTKDAGSWVGGIMPLAALAGGITGGPLIEYLGRRNTILATAVPFIVSSLLIACAVN 121
Query: 1323 VWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVA-IGIFTAHLLGTF 1381
V +IL GRFLTGF +G++S VY+ ET +P+ RG L LL TA+ IGI ++ G+F
Sbjct: 122 VIMILCGRFLTGFCVGIASLSLPVYLGETLQPEVRGTLG-LLPTALGNIGILVCYVAGSF 180
Query: 1382 LHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKS 1441
++W + + A P I PE+P W ++G +A++A WLRG A+ E E K
Sbjct: 181 MNWSILAFLGAALPVPFLILMIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKD 240
Query: 1442 MLNHAERSTITKSENMTDXXXXXXXXXNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYT 1501
++ +S+ D + LKPL+I L F QQFSG+N +IFYT
Sbjct: 241 LM---------QSQAEADSQATRNTCLELFKRINLKPLSISLGLMFFQQFSGINAVIFYT 291
Query: 1502 VGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPXXXXXXXXXXXXXXXVAS 1561
V I K+ ++ TI++ IV F+ L+ GR+ +
Sbjct: 292 VQIFKDAGSTIDSNLCTIIVGIVNFFATFMGIILIDRLGRKILLYVSDIAMILTLSILGG 351
Query: 1562 ILKFMQGLLPS-----FMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTC 1616
+ + P ++P+ + Y++ S+G +PW+M+GE+ P R + + T
Sbjct: 352 FF-YCKAHGPDVSHLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTA 410
Query: 1617 FAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQIE 1672
F + FVV KT L +++G F L+G + G F+ I++PET+ K+L++IE
Sbjct: 411 FNWFCTFVVTKTFQDLTVAMGPHGAFWLFGVVCIVGLFFVIIYVPETRGKSLEEIE 466
|
|
| UNIPROTKB|B4QBN3 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila simulans (taxid:7240)] | Back alignment and assigned GO terms |
|---|
Score = 550 (198.7 bits), Expect = 9.8e-52, P = 9.8e-52
Identities = 130/416 (31%), Positives = 209/416 (50%)
Query: 1263 STIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATE 1322
++ +T + G+W+ + L I G L+E GRR T L +PFI+ ++I+ A
Sbjct: 62 TSFEVTKDAGSWVGGIMPLAALAGGITGGPLIEYLGRRTTILATAVPFIVSSLLIACAVN 121
Query: 1323 VWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVA-IGIFTAHLLGTF 1381
V +IL GRFLTGF +G++S VY+ ET +P+ RG L LL TA+ IGI ++ G+F
Sbjct: 122 VIMILCGRFLTGFCVGIASLSLPVYLGETLQPEVRGTLG-LLPTALGNIGILVCYVAGSF 180
Query: 1382 LHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKS 1441
++W + + A P I PE+P W ++G +A++A WLRG A+ E E K
Sbjct: 181 MNWSMLAFLGAALPVPFLILMIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKD 240
Query: 1442 MLNHAERSTITKSENMTDXXXXXXXXXNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYT 1501
++ +S+ D + LKPL+I L F QQFSG+N +IFYT
Sbjct: 241 LM---------QSQAEADSQARRNTCLELFKRINLKPLSISLGLMFFQQFSGINAVIFYT 291
Query: 1502 VGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPXXXXXXXXXXXXXXXVAS 1561
V I K+ ++ TI++ IV F+ L+ GR+ +
Sbjct: 292 VQIFKDAGSTIDSNLCTIIVGIVNFFATFMGILLIDRLGRKILLYISDIAMILTLSILGG 351
Query: 1562 ILKFMQGLLPS-----FMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTC 1616
+ + P ++P+ + Y++ S+G +PW+M+GE+ P R + + T
Sbjct: 352 FF-YCKAHGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTA 410
Query: 1617 FAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQIE 1672
F + FVV KT L +++G F L+G + G F+ I +PET+ K+L++IE
Sbjct: 411 FNWFCTFVVTKTFQDLTVAMGAHGAFWLFGVVCIVGLFFVIICVPETRGKSLEEIE 466
|
|
| UNIPROTKB|B4P624 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila yakuba (taxid:7245)] | Back alignment and assigned GO terms |
|---|
Score = 564 (203.6 bits), Expect = 2.9e-51, P = 2.9e-51
Identities = 131/416 (31%), Positives = 210/416 (50%)
Query: 1263 STIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATE 1322
++ +T + G+W+ + L + + G L+E GRR T L +PFI+ ++I+ A
Sbjct: 429 TSFTVTKDAGSWVGGIMPLAGLVGGVAGGPLIEYMGRRNTILATAVPFIVSSLLIACAVN 488
Query: 1323 VWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVA-IGIFTAHLLGTF 1381
V ++L GRFL GF +G++S VY+ ET +P+ RG L LL TA IGI + G+F
Sbjct: 489 VAMVLCGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLG-LLPTAFGNIGILVCFVAGSF 547
Query: 1382 LHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKS 1441
++W + + A P I + PE+P W S+G +A++A WLRG A+ E E K
Sbjct: 548 MNWSMLAFLGAALPVPFLILMFLIPETPRWYVSRGREERARKALTWLRGKEADVEPELKG 607
Query: 1442 MLNHAERSTITKSENMTDXXXXXXXXXNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYT 1501
++ +S+ D +L LKPL+I L F QQFSG+N +IFYT
Sbjct: 608 LM---------RSQADADRQATQNTMLELLKRNNLKPLSISLGLMFFQQFSGINAVIFYT 658
Query: 1502 VGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPXXXXXXXXXXXXXXXVAS 1561
V I K+ ++ TI++ +V V F+ L+ GR+ +
Sbjct: 659 VQIFKDAGSTIDGNVCTIIVGVVNFVATFIGILLIDRAGRKILLYASDIAMVLTLFVLGG 718
Query: 1562 ILKFMQGLLPS-----FMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTC 1616
+ + P ++P+ + Y++ S+G +PW+M+GE+ P R + ++T
Sbjct: 719 FF-YCKAHGPDVSHLGWLPLTCFVVYILGFSVGFGPIPWLMMGEILPAKIRGAAASVATS 777
Query: 1617 FAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQIE 1672
F + FVV KT L S+G F L+G I G F+ +++PET+ KTL+ IE
Sbjct: 778 FNWTCTFVVTKTFQDLVGSLGAHGAFWLFGAICFVGLFFVILYVPETQGKTLEDIE 833
|
|
| UNIPROTKB|B4HNS0 Tret1-1 "Facilitated trehalose transporter Tret1-1" [Drosophila sechellia (taxid:7238)] | Back alignment and assigned GO terms |
|---|
Score = 562 (202.9 bits), Expect = 4.9e-51, P = 4.9e-51
Identities = 131/416 (31%), Positives = 209/416 (50%)
Query: 1263 STIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATE 1322
++ +T + G+W+ + L I G L+E GRR T L +PFI+ ++I+ A
Sbjct: 430 TSFEVTQDAGSWVGGIMPLAALAGGITGGPLIEYLGRRNTILATAVPFIVSSLLIACAVN 489
Query: 1323 VWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVA-IGIFTAHLLGTF 1381
V ++L GRFL GF +G++S VY+ ET +P+ RG L LL TA IGI + G+F
Sbjct: 490 VAMVLCGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLG-LLPTAFGNIGILLCFVAGSF 548
Query: 1382 LHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKS 1441
++W + + A P I + PE+P W +G +A++A WLRG A+ E E K
Sbjct: 549 MNWSMLAFLGAALPVPFLILMFLIPETPRWFVGRGLEERARKALKWLRGKEADVEPELKG 608
Query: 1442 MLNHAERSTITKSENMTDXXXXXXXXXNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYT 1501
++ +S+ D +L LKPL+I L F QQFSG+N +IFYT
Sbjct: 609 LM---------RSQADADRQASRNTMLELLKLNNLKPLSISLGLMFFQQFSGINAVIFYT 659
Query: 1502 VGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPXXXXXXXXXXXXXXXVAS 1561
V I K+ ++ TI++ IV + F+ L+ GR+ +
Sbjct: 660 VQIFKDAGSTIDGNLCTIIVGIVNFLATFIGIVLIDRAGRKILLYVSDIAMVLTLFVLGG 719
Query: 1562 ILKFMQGLLPS-----FMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTC 1616
+ + P ++P+ + Y++ S+G +PW+M+GE+ P R + ++T
Sbjct: 720 FF-YCKANGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATA 778
Query: 1617 FAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQIE 1672
F + FVV KT L +++G F L+G I G F+ I++PET+ KTL+ IE
Sbjct: 779 FNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTLEDIE 834
|
|
| FB|FBgn0050035 Tret1-1 "Trehalose transporter 1-1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 560 (202.2 bits), Expect = 8.2e-51, P = 8.2e-51
Identities = 131/416 (31%), Positives = 209/416 (50%)
Query: 1263 STIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATE 1322
++ +T + G+W+ + L I G L+E GRR T L +PFI+ ++I+ A
Sbjct: 430 TSFEVTQDAGSWVGGIMPLAGLAGGIAGGPLIEYLGRRNTILATAVPFIVSSLLIACAVN 489
Query: 1323 VWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVA-IGIFTAHLLGTF 1381
V ++L GRFL GF +G++S VY+ ET +P+ RG L LL TA IGI + G+F
Sbjct: 490 VAMVLCGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLG-LLPTAFGNIGILLCFVAGSF 548
Query: 1382 LHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKS 1441
++W + + A P I + PE+P W +G +A++A WLRG A+ E E K
Sbjct: 549 MNWSMLAFLGAALPVPFLILMFLIPETPRWFVGRGLEERARKALKWLRGKEADVEPELKG 608
Query: 1442 MLNHAERSTITKSENMTDXXXXXXXXXNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYT 1501
++ +S+ D +L LKPL+I L F QQFSG+N +IFYT
Sbjct: 609 LM---------RSQADADRQASRNTMLELLKLNNLKPLSISLGLMFFQQFSGINAVIFYT 659
Query: 1502 VGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPXXXXXXXXXXXXXXXVAS 1561
V I K+ ++ TI++ IV + F+ L+ GR+ +
Sbjct: 660 VQIFKDAGSTIDGNLCTIIVGIVNFLATFIGIVLIDRAGRKILLYVSDIAMVLTLFVLGG 719
Query: 1562 ILKFMQGLLPS-----FMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTC 1616
+ + P ++P+ + Y++ S+G +PW+M+GE+ P R + ++T
Sbjct: 720 FF-YCKTYGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATA 778
Query: 1617 FAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQIE 1672
F + FVV KT L +++G F L+G I G F+ I++PET+ KTL+ IE
Sbjct: 779 FNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTLEDIE 834
|
|
| UNIPROTKB|B4MYA4 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila willistoni (taxid:7260)] | Back alignment and assigned GO terms |
|---|
Score = 554 (200.1 bits), Expect = 4.4e-50, P = 4.4e-50
Identities = 132/416 (31%), Positives = 208/416 (50%)
Query: 1263 STIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATE 1322
++ +TP+ +W+ + L + I G +E GRR T L +PFI+ ++I+ A
Sbjct: 444 TSFEVTPQAASWVGGIMPLAGLLGGIAGGPFIEYLGRRNTILTTAVPFIVSSLLIACAVN 503
Query: 1323 VWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVA-IGIFTAHLLGTF 1381
+ ++L GRFL GF +G++S VY+ ET +P+ RG L LL TA IGI + GT+
Sbjct: 504 ITMVLLGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLG-LLPTAFGNIGILLCFVAGTY 562
Query: 1382 LHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKS 1441
+ W + + A P I + PE+P W S+G +A++A WLRG A+ E E K
Sbjct: 563 MDWSMLAFLGAALPVPFLILMFLIPETPRWYVSRGREERARKALSWLRGKEADVEPELKG 622
Query: 1442 MLNHAERSTITKSENMTDXXXXXXXXXNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYT 1501
+L +S+ D +L LKPL+I L F QQ SG+N +IFYT
Sbjct: 623 LL---------RSQADADRSATQNTMLELLKRNNLKPLSISLGLMFFQQLSGINAVIFYT 673
Query: 1502 VGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPXXXXXXXXXXXXXXXVAS 1561
V I K+ ++ TI++ IV + F+ L+ GR+ +
Sbjct: 674 VQIFKDAGSTIDGNVCTIIVGIVNFMATFIGIILIDRAGRKILLYVSNVAMIITLFVLGG 733
Query: 1562 IL--KFMQGLLPS---FMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTC 1616
K G+ S ++P+ + Y++ S+G +PW+M+GE+ P R + ++T
Sbjct: 734 FFYCKDKAGIDVSNVGWLPLSCFVVYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATA 793
Query: 1617 FAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQIE 1672
F + FVV KT + IG+ F L+G I G F+ I++PET+ KTL+ IE
Sbjct: 794 FNWTCTFVVTKTFQDMLDVIGSYGAFWLFGAICFIGLFFVIIYVPETQGKTLEDIE 849
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1693 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 4e-49 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 9e-47 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-28 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 3e-27 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 5e-25 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 5e-24 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 1e-21 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-20 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-16 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-12 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-11 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 2e-10 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 2e-10 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 6e-10 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 8e-10 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-08 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 3e-08 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 9e-08 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-07 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-07 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 3e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-06 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-06 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 2e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-05 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 2e-04 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-04 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 2e-04 | |
| PRK11646 | 400 | PRK11646, PRK11646, multidrug resistance protein M | 2e-04 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 4e-04 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 4e-04 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 5e-04 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 5e-04 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 7e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 7e-04 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 7e-04 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 0.001 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 4e-49
Identities = 100/415 (24%), Positives = 193/415 (46%), Gaps = 26/415 (6%)
Query: 1273 TWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLAT--EVWVILAGR 1330
I S+ S+ I + L + +GR+ + L+ + F++G ++ A ++++ GR
Sbjct: 49 GLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGR 108
Query: 1331 FLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL-------H 1383
+ G +G S + +YI+E K RG L +L + GI A ++G L
Sbjct: 109 VIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDG 168
Query: 1384 WKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSML 1443
W+ + + I F PESP WL KG +A+ LRG + + E +
Sbjct: 169 WRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQ-EIQ--- 224
Query: 1444 NHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVG 1503
E+ ++ + + +K W + + L + ++ QQ +G+N + +Y+
Sbjct: 225 --EEKDSL----ERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPT 278
Query: 1504 ISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASIL 1563
I + + + TI++ +V V F+ L+ FGRRPL LL G + L + L
Sbjct: 279 IFETLGLS-DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVAL 337
Query: 1564 KFMQGLLPSFMPVILLMFYMVFVS---IGLQQLPWMMIGELFPQATRELGSGISTCFAFL 1620
+ ++ ++F ++F++ +G +PW+++ ELFP R I+T +L
Sbjct: 338 LGVAK--SKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWL 395
Query: 1621 TLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQIEDDF 1675
F++ P++ +IG F ++ + +F++ F+PETK +TL++I++ F
Sbjct: 396 ANFLIGFLFPIITGAIGGY-VFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 9e-47
Identities = 108/414 (26%), Positives = 199/414 (48%), Gaps = 23/414 (5%)
Query: 1274 WIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISL---ATEVWVILAGR 1330
+ S+ + FI + +L + +GR+ + L++ + F++G +++ L A V +++ GR
Sbjct: 75 LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGR 134
Query: 1331 FLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTA-------HLLGTFLH 1383
L G +G++S + +Y++E RG L++L A+ GI A L L
Sbjct: 135 VLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLG 194
Query: 1384 WKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSML 1443
W+ + + F+ +F PESP WL KG +A+++ LRG T+ + E L
Sbjct: 195 WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRG-TSGEDKELLDEL 253
Query: 1444 NHAE-RSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTV 1502
+ + +I K + I + L + +V + QQF+G+N +++Y+
Sbjct: 254 ELIDIKRSIEKRSVQPSWGSLFSSTRRIR-----RRLFLGVVLQWFQQFTGINAIMYYSP 308
Query: 1503 GISKE--VSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVA 1560
I + VS D + +I++ V FV L+ FGRRPL L+ G + L +
Sbjct: 309 TIFENAGVSTDHA-FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLG 367
Query: 1561 SILKFM---QGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCF 1617
+ + ++ ++ ++ F ++G +PW+++ E+FP + R G I+
Sbjct: 368 ILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAA 427
Query: 1618 AFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQI 1671
+L F+V P + SIG F +G + G +F+Y FLPETK +TL++I
Sbjct: 428 NWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-28
Identities = 71/292 (24%), Positives = 130/292 (44%), Gaps = 23/292 (7%)
Query: 4 ATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLG 63
+++ VGR + GL VG S +YI+E + RGA+ ++ L I+ GI ++ ++G
Sbjct: 98 GKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIG 157
Query: 64 TFL-------HWKTASAVCALFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHS 116
L W+ + + + I + PESP WL KG EA LRG S
Sbjct: 158 LGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVS 217
Query: 117 AESES--ELKSMLNHAQKITITKTENMVDKKKKREWKKNILSPEFLKPFVILLVFFFVQQ 174
+ E K L + + +K W + + ++ ++ QQ
Sbjct: 218 DVDQEIQEEKDSLERSVEA------------EKASWLELFRGKTVRQRLLMGVMLQIFQQ 265
Query: 175 FSGVNTVAFYSVGILKNVSPDVNEYVATMAIDIVRVIMSAVTCGLLRITGRRPLALLSSL 234
+G+N + +YS I + + + + T+ + +V + + + L+ GRRPL LL +
Sbjct: 266 LTGINAIFYYSPTIFETLGLS-DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAA 324
Query: 235 GTAFSLLGLALILKFPQEQLP-SFIPVILLMSYIVFVSVGLVPLPWIMTGEL 285
G A L L + L + + ++ ++ +I F ++G P+PW++ EL
Sbjct: 325 GMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSEL 376
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 3e-27
Identities = 79/294 (26%), Positives = 137/294 (46%), Gaps = 18/294 (6%)
Query: 4 ATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFI----- 58
A V ++ VGR L G+ VG++S +Y++E RGA+ ++ LAI+ GI +
Sbjct: 124 ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183
Query: 59 --SHLLGTFLHWKTASAVCALFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHS 116
L L W+ + + + + ++ PESP WL KG EA ++ LRG S
Sbjct: 184 SGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTS 243
Query: 117 AESESELKSMLNHAQKITITKTENMVDKKKKREWKKNILSPEFLKPFVILLVFFFVQQFS 176
E + L + K +I K + I FL ++L +F QQF+
Sbjct: 244 GEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFL---GVVLQWF--QQFT 298
Query: 177 GVNTVAFYSVGILKN--VSPDVNEYVATMAIDIVRVIMSAVTCGLLRITGRRPLALLSSL 234
G+N + +YS I +N VS D ++ ++ + V + V L+ GRRPL L+ +
Sbjct: 299 GINAIMYYSPTIFENAGVSTDHA-FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAA 357
Query: 235 GTAFSLLGLALILKF---PQEQLPSFIPVILLMSYIVFVSVGLVPLPWIMTGEL 285
G A L L ++ + + ++ ++ +I F ++G P+PW++ E+
Sbjct: 358 GMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEI 411
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 5e-25
Identities = 64/261 (24%), Positives = 113/261 (43%), Gaps = 25/261 (9%)
Query: 518 GSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMAT--EVWLICVGRFLTGLSVGL 575
G I + + L D +GR+ + LI V FV+G ++ A +++ VGR + GL VG
Sbjct: 58 GCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGG 117
Query: 576 SSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL-------HWKTASAVCA 628
S +YI+E + RGA+ ++ L I+ GI ++ ++G L W+ +
Sbjct: 118 ISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQF 177
Query: 629 LFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHSAESES--ELKSMLNHAQKIT 686
+ + I + PESP WL KG EA LRG S + E K L + +
Sbjct: 178 VPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEA- 236
Query: 687 ITKTENMVDKKKKREWKKNILSPEFLKPFVILLVFFFVQQFSGVNTVAFYSVGILKNV-- 744
+K W + + ++ ++ QQ +G+N + +YS I + +
Sbjct: 237 -----------EKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGL 285
Query: 745 SPDVNEYVATMAIDIVRVIIS 765
S + + ++ V I+
Sbjct: 286 SDSLLVTIIVGVVNFVFTFIA 306
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 5e-24
Identities = 68/237 (28%), Positives = 114/237 (48%), Gaps = 15/237 (6%)
Query: 518 GSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIM---SMATEVWLICVGRFLTGLSVG 574
G +I + + L D +GR+ + LI+ + FV+G ++M + A V ++ VGR L G+ VG
Sbjct: 83 GGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVG 142
Query: 575 LSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFI-------SHLLGTFLHWKTASAVC 627
++S +Y++E RGA+ ++ LAI+ GI + L L W+ +
Sbjct: 143 IASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQ 202
Query: 628 ALFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHSAESESELKSMLNHAQKITI 687
+ + + ++ PESP WL KG EA ++ LRG S E + L + K +I
Sbjct: 203 LIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSI 262
Query: 688 TKTENMVDKKKKREWKKNILSPEFLKPFVILLVFFFVQQFSGVNTVAFYSVGILKNV 744
K + I FL ++L +F QQF+G+N + +YS I +N
Sbjct: 263 EKRSVQPSWGSLFSSTRRIRRRLFL---GVVLQWF--QQFTGINAIMYYSPTIFENA 314
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-21
Identities = 97/441 (21%), Positives = 187/441 (42%), Gaps = 76/441 (17%)
Query: 1285 IACILGS----FLMEMYGRRLTNLVLCIPFIMGWVIISLATE-------------VWVIL 1327
I CI+G + +GRR + + + F + + S E V +
Sbjct: 66 IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFIS-ALGSAWPEFGFTSIGPDNTGYVPEFV 124
Query: 1328 AGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAH------LLGTF 1381
R + G +GL+S ++ +YIAE RG L + A+ G +
Sbjct: 125 IYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGD 184
Query: 1382 LHWKTTSAVCALF-----PCASF-IFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAES 1435
W T +F P F + YF PE+P +L S+G + +QA LR +
Sbjct: 185 ASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRG---KQEQAEGILRKIMGNT 241
Query: 1436 E-----FEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQ 1490
E K L+H ++ K L + ++ + ++L F QQ
Sbjct: 242 LATQALQEIKHSLDHGRKTG----------GKLLMFGVGVIV------IGVMLSVF--QQ 283
Query: 1491 FSGLNTLIFY------TVGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPL 1544
F G+N +++Y T+G S +++ TI++ ++ + + + FGR+PL
Sbjct: 284 FVGINVVLYYAPEIFKTLGASTDIA-----LLQTIIVGVINLTFTVLAIMTVDKFGRKPL 338
Query: 1545 ALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQ 1604
++ LG + + + + + Q P + ++ ++FY+ ++ + W+++ E+FP
Sbjct: 339 QIIGALGMAIGMFSLGTAF-YTQA--PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN 395
Query: 1605 ATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETF------GLYGCITAFGFVFLYI 1658
A R I+ ++ + V T P++ + F +YGC+ +F++
Sbjct: 396 AIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK 455
Query: 1659 FLPETKNKTLQQIEDDFKSKT 1679
F+PETK KTL+++E ++ +T
Sbjct: 456 FVPETKGKTLEEMEALWEPET 476
|
Length = 479 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 1e-20
Identities = 91/358 (25%), Positives = 151/358 (42%), Gaps = 25/358 (6%)
Query: 293 MGDFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCG 352
+G F SG G + LP L ++ A I S +L A+ +L D G
Sbjct: 6 LGFFLSGLDRGLLSPALPLLAEDLG---LSASQAGLIVSAFSLGYALGSLLAGYLSDRFG 62
Query: 353 RRFSNLILCIPFVLGWIIISSATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRG 412
RR L+ + F LG ++++ A+ +WLL VGRFL GL G L P A IAE PK RG
Sbjct: 63 RRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERG 122
Query: 413 AFLAVSSLAISSGILV----SHLLDHLPTVRHLGLVMALVGPL--PQRSYLHLGNRLFSF 466
L + S G L+ LL R L L++A++G L +L L +
Sbjct: 123 RALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLAL 182
Query: 467 SYLTGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQLESANSTIPITPEDGSWIACVLS 526
++ + L P++ G+++ + +LL S + G + +L
Sbjct: 183 AFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLL-------SLFGL----GGILGALLG 231
Query: 527 CILMDLYGRRFTNLILCVPF-VLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIA 585
+L D GRR L++ + LG +++++A + L+ V L G +G + P + +
Sbjct: 232 GLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLAS 291
Query: 586 ESTEPRYRGAILAIVSLAISSGIFISHLLGTFL----HWKTASAVCALFPFISCIFVY 639
E P RG + + S G + LL L + + A ++ + +
Sbjct: 292 ELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 2e-16
Identities = 92/410 (22%), Positives = 157/410 (38%), Gaps = 49/410 (11%)
Query: 1274 WIASMASLPTFIACILGSF----LMEMYGRR----LTNLVLCIPFIMGWVIISLATEVWV 1325
W + F+ +LGSF L + +GR+ L+ LV + G + + V
Sbjct: 127 WKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAV---SGVLTA-FSPNYTV 182
Query: 1326 ILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL-HW 1384
L R L G +G A+V E K R ++ L+ ++G+ L+ F+ W
Sbjct: 183 FLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDW 242
Query: 1385 KTTSAVCALFPCASFIFAY-FTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSML 1443
+ +L P F F PESP WL S+G +A + R K +
Sbjct: 243 RWLQLAVSL-PTFLFFLLSWFVPESPRWLISQGRIEEALKIL--QRIAKING----KKLP 295
Query: 1444 NHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVG 1503
++ K + KK ++ T L+ + L+ + F+ +Y G
Sbjct: 296 AEVLSLSLEKDLSS---SKKQYSFLDLFRTPNLRKTTLCLMMLW---FT--TAFSYY--G 345
Query: 1504 ISKEVSP-DVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASI 1562
+ ++ N Y + +V + +T L+ GRR + L L GVA +
Sbjct: 346 LVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRY-----TMAASLLLAGVALL 400
Query: 1563 LKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFA---- 1618
L + F+ L + ++ Q + ++ EL+P R LG G+ + A
Sbjct: 401 LLLFVPVDLYFLRTALAVLGKFGITSAFQMV-YLYTAELYPTVVRNLGVGVCSTMARVGS 459
Query: 1619 FLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTL 1668
++ F+V LFL L+G + + +FLPETK L
Sbjct: 460 IISPFLVYLGEKWLFL------PLVLFGGLALLAGILT-LFLPETKGVPL 502
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-12
Identities = 78/342 (22%), Positives = 119/342 (34%), Gaps = 28/342 (8%)
Query: 296 FSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRF 355
F +G LP + + I T + + +L A+A L D GRR
Sbjct: 6 FLAGLGRSLLGPALPLYLAEDLGISPTE--IGLLLTAFSLGYALAQPLAGRLSDRFGRRR 63
Query: 356 SNLILCIPFVLGWIIISSATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFL 415
LI + F LG +++ A+ +WLL V R L GL G L P A IA+ P+ RG L
Sbjct: 64 VLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRAL 123
Query: 416 AVSSLAISSGI----LVSHLLDHLPTVRHLGLVMALVGPL------------PQRSYLHL 459
+ S G L+ LL L R L++A++ L P S
Sbjct: 124 GLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPK 183
Query: 460 GNRLFSFSYLTGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLP----QLESANSTIPITP 515
+ + L + A L G LP L + +
Sbjct: 184 PAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLL 243
Query: 516 EDGSWIACVLSCI---LMDLYGRRFT---NLILCVPFVLGWVIMSMATEVWLICVGRFLT 569
+ + + L D GRR L+L + LG ++S+ + V L
Sbjct: 244 GLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLL 303
Query: 570 GLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFIS 611
G GL P +++ RG + + A S G +
Sbjct: 304 GFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 6e-11
Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 4/173 (2%)
Query: 1238 LTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMY 1297
L L +G +L P L + ++ I S SL + +L +L + +
Sbjct: 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF 61
Query: 1298 GRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYR 1357
GRR L+ + F +G ++++ A+ +W++L GRFL G G P A IAE PK R
Sbjct: 62 GRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKER 121
Query: 1358 GVLSALLCTAVAIGIFTAHLLGTFLH----WKTTSAVCALFPCASFIFAYFTP 1406
G L +G LLG L W+ + A+ + F
Sbjct: 122 GRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-10
Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 6/151 (3%)
Query: 285 LLAAMGPIMGDFSSGTAVGFSAVLLPQ----LQSANSTIPITTEDASWIASMAALPMAVA 340
L+AA+G + + +G F ++ ++ +T + I S+ ++ +
Sbjct: 3 LVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIG 62
Query: 341 CVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSAT--KVWLLCVGRFLTGLSIGFLTPPA 398
+ D GR+ S LI + FV+G ++ A ++L VGR + GL +G ++
Sbjct: 63 SLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLV 122
Query: 399 IVYIAETSEPKYRGAFLAVSSLAISSGILVS 429
+YI+E + K RGA ++ L I+ GILV+
Sbjct: 123 PMYISEIAPKKLRGALGSLYQLGITFGILVA 153
|
Length = 449 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-10
Identities = 66/294 (22%), Positives = 125/294 (42%), Gaps = 50/294 (17%)
Query: 14 RFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFLH------ 67
R + G+ VGL+S S +YIAE RG +++ AI G + + + F+
Sbjct: 127 RIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDAS 186
Query: 68 ------WKTASAVCALFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHSAESE- 120
W+ A A+ + + +Y PE+P +L S+G +AE + G++ ++
Sbjct: 187 WLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQA 246
Query: 121 -SELKSMLNHAQKITITKTENMVDKKKKREWKKNILSPEFLKPFV-ILLVFFFVQQFSGV 178
E+K L+H +K + L + ++L F QQF G+
Sbjct: 247 LQEIKHSLDHGRK----TGGKL-------------LMFGVGVIVIGVMLSVF--QQFVGI 287
Query: 179 NTVAFYSVGILKNVSPDVNEYVATMAIDIVRVIMSAV--TCGLLRIT-----GRRPLALL 231
N V +Y+ I K + +T + +I+ + T +L I GR+PL ++
Sbjct: 288 NVVLYYAPEIFKTLG------ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII 341
Query: 232 SSLGTAFSLLGLALILKFPQEQLPSFIPVILLMSYIVFVSVGLVPLPWIMTGEL 285
+LG A + L Q P + ++ ++ Y+ ++ P+ W++ E+
Sbjct: 342 GALGMAIGMFSLGTAFYT---QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEI 392
|
Length = 479 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 6e-10
Identities = 51/253 (20%), Positives = 95/253 (37%), Gaps = 44/253 (17%)
Query: 769 ASALCALFPLTSIIFVYFTPESPSWLASKGYTVQAEKAFHWLRGHSDEFDNELKSILDYA 828
L + + ++F PESP WL KG +A K+ LRG S E L
Sbjct: 198 PLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLD------ 251
Query: 829 NSAEKAFHWLRGHSDEFDNELKSIMDYAQNITITNSEDMNYKEKICEWKKNILSPEFLKP 888
EL+ I +I + + I FL
Sbjct: 252 -------------------ELELID---IKRSIEKRSVQPSWGSLFSSTRRIRRRLFL-- 287
Query: 889 FVILLVFFFVQQFSGASTQFSGASTVSFYSVAILQNV-SADVNEYTATMAIDILRVIMSA 947
++L +F QF+G + + +YS I +N + + + ++ + + +
Sbjct: 288 -GVVLQWF---------QQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTF 337
Query: 948 VTCGLLRITGRRPIAILSSLGTAFSLLGLALMLK---YPQEELPSFIPVILLMSYIVFVS 1004
V L+ GRRP+ ++ + G A L L ++ + + ++ ++ +I F +
Sbjct: 338 VAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFA 397
Query: 1005 FGLQPLPWIMAGE 1017
G P+PW++ E
Sbjct: 398 MGWGPVPWVIVSE 410
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 8e-10
Identities = 47/248 (18%), Positives = 92/248 (37%), Gaps = 47/248 (18%)
Query: 771 ALCALFPLTSIIFVYFTPESPSWLASKGYTVQAEKAFHWLRGHSDEFDNELKSILDYANS 830
L + + +I + F PESP WL KG +A LRG SD
Sbjct: 174 GLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSD--------------- 218
Query: 831 AEKAFHWLRGHSDEFDNELKSIMDYAQNITITNSEDMNYKEKICEWKKNILSPEFLKPFV 890
E E S+ + + + + W + + +
Sbjct: 219 ----------VDQEIQEEKDSL-------------ERSVEAEKASWLELFRGKTVRQRLL 255
Query: 891 ILLVFFFVQQFSGASTQFSGASTVSFYSVAILQNVSADVNEYTATMAIDILRVIMSAVTC 950
+ ++ QQ +G + F +YS I + + + T+ + ++ + + +
Sbjct: 256 MGVMLQIFQQLTGINAIF-------YYSPTIFETLGLS-DSLLVTIIVGVVNFVFTFIAI 307
Query: 951 GLLRITGRRPIAILSSLGTAFSLLGLALMLKYPQEELP-SFIPVILLMSYIVFVSFGLQP 1009
L+ GRRP+ +L + G A L L + L + + ++ ++ +I F + G P
Sbjct: 308 FLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWGP 367
Query: 1010 LPWIMAGE 1017
+PW++ E
Sbjct: 368 VPWVIVSE 375
|
Length = 449 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-08
Identities = 44/205 (21%), Positives = 80/205 (39%), Gaps = 19/205 (9%)
Query: 529 LMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAEST 588
L D GRR L + F + ++ ++AT V + + RFL GL +G P ++E
Sbjct: 75 LADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYA 134
Query: 589 EPRYRGAILAIV----SLAISSGIFISHLLGTFLHWKTASAVCALFPFISCIFVYST-PE 643
R+RG + ++ + + G F++ L W++ V + P + + + PE
Sbjct: 135 PKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPE 194
Query: 644 SPSWLASKGYSVEAEQAFHWLRGHSAESESELKSMLNHAQKITITKTENMVDKKKKREWK 703
S +L SK AE++S L E + KR
Sbjct: 195 SIDFLVSKRPETVRRIVNAIAPQMQAEAQSAL--------------PEQKATQGTKRSVF 240
Query: 704 KNILSPEFLKPFVILLVFFFVQQFS 728
K + + + V+L + +F+
Sbjct: 241 KALFQGKTARITVLLWLLYFMLLVG 265
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-08
Identities = 67/359 (18%), Positives = 126/359 (35%), Gaps = 52/359 (14%)
Query: 1267 ITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVI 1326
I+P + + + SL +A L L + +GRR L+ + F +G +++ A+ +W++
Sbjct: 29 ISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLL 88
Query: 1327 LAGRFLTGFALGLSSPVALVYIAETTEPKYR----GVLSALLCTAVAIGIFTAHLLGTFL 1382
L R L G G P A IA+ P+ R G+LSA A+G LL +
Sbjct: 89 LVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLF 148
Query: 1383 HWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSM 1442
W+ + A+ + + A ++
Sbjct: 149 GWRAAFLILAILALLAAVLAAL--------------------LLPRPPPESK-------- 180
Query: 1443 LNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTV 1502
+ K +L L L +L+F F ++ V
Sbjct: 181 ---------RPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEV 231
Query: 1503 -GISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVAS 1561
G+S ++ + + + + L GRR LL+ L L+ LG+A
Sbjct: 232 LGLSALLAGLLLGLAGLLGA-----IGRLLLGRLSDRLGRRRRLLLALLLLILAALGLAL 286
Query: 1562 ILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFL 1620
+ L S + +++ + + F + + ++ +L P+ R SG+ L
Sbjct: 287 L-----SLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSL 340
|
Length = 346 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 9e-08
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 12/160 (7%)
Query: 278 PWIMTGELLAAMGPIMGDFSSGTAVGFSAVL-----LPQLQSANSTIPITTEDASWIASM 332
+ L+AA+G +M + +G G A+ S + + + + S+
Sbjct: 24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLW----GLVVSI 79
Query: 333 AALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATK---VWLLCVGRFLTGL 389
+ + + D GR+ S LI+ + FV+G I++ A V +L VGR L G+
Sbjct: 80 FLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGI 139
Query: 390 SIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVS 429
+G + +Y++E + RGA ++ LAI+ GILV+
Sbjct: 140 GVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVA 179
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-07
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Query: 518 GSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSS 577
G +A L+ L D +GRR LI + F LG +++ A+ +WL+ V R L GL G
Sbjct: 44 GYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALF 103
Query: 578 PPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL----HWKTASAVCALFPFI 633
P + IA+ P RG L ++S G + LLG L W+ A + A+ +
Sbjct: 104 PAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALL 163
Query: 634 SCIFVY 639
+ +
Sbjct: 164 AAVLAA 169
|
Length = 346 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-07
Identities = 62/306 (20%), Positives = 111/306 (36%), Gaps = 36/306 (11%)
Query: 4 ATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIV----SLAISSGIFIS 59
AT V + + RFL GL +G P ++E R+RG + ++ + + G F++
Sbjct: 102 ATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLA 161
Query: 60 HLLGTFLHWKTASAVCALFPFISCIFVYST-PESPSWLASKGYSVEAEQAFHWLRGHSAE 118
L W++ V + P + + + PES +L SK AE
Sbjct: 162 GWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAE 221
Query: 119 SESELKSMLNHAQKITITKTENMVDKKKKREWKKNILSPEFLKPFVILLVFFFVQQFSGV 178
++S L E + KR K + + + V+L + +F+ GV
Sbjct: 222 AQSAL--------------PEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLV-GV 266
Query: 179 NTVAFYSVGILKNVSPDVNEYVATMAIDIVRVIMSAVTCGLLRIT-GRRPLALLSSLGTA 237
+ + ++ + ++ A+ ++ ++ G L G R ALL LG
Sbjct: 267 YFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAV 326
Query: 238 FSLLGLALILKFPQEQLPSFIPVILLMSYIVFVSVGLVPLPWIMTGELLAAMGPIMGDFS 297
F++L + + F P +LL + + G L A M
Sbjct: 327 FAVLVGSTL----------FSPTLLL--LLGAI-AGFFVN--GGQSGLYALMALFYPTAI 371
Query: 298 SGTAVG 303
T VG
Sbjct: 372 RATGVG 377
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-07
Identities = 70/359 (19%), Positives = 123/359 (34%), Gaps = 43/359 (11%)
Query: 1267 ITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVI 1326
+ P ++ S + + L + GRR L + F + ++ +LAT V +
Sbjct: 49 LDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQL 108
Query: 1327 LAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL---- 1382
L RFL G LG P ++E ++RG L+ IG L +L
Sbjct: 109 LILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF 168
Query: 1383 HWKTTSAVCALFPCASFIF-AYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKS 1441
W++ V + P + F PES +L SK + AE++
Sbjct: 169 GWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSAL-- 226
Query: 1442 MLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFS--GLNTLIF 1499
E + K K + + + ++ + +F+ L +
Sbjct: 227 ------------PEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLP 274
Query: 1500 YTVGISKEVSPDVNEYTATIVIDIVRVVMAF---VTCGLLRIFGRRPLALLSCLGTCLSL 1556
+ E+ ++ A + + L G R ALL LG ++
Sbjct: 275 K---LMVELGFSLSL--AATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAV 329
Query: 1557 LGVASILKFMQGLLPSFMPVILLMFYMV---FVSIGLQQLPWMMIGELFPQATRELGSG 1612
L +++ F P +LL+ + FV+ G L +M +P A R G G
Sbjct: 330 LVGSTL----------FSPTLLLLLGAIAGFFVNGGQSGLYALM-ALFYPTAIRATGVG 377
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-06
Identities = 37/187 (19%), Positives = 60/187 (32%), Gaps = 9/187 (4%)
Query: 1475 FLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEV--SPDVNEYTATIVIDIVRVVMAFVT 1532
FL L ++L F G L+ Y +EV + + ++ A +
Sbjct: 172 FLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLG 231
Query: 1533 CGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQ 1592
L GRR L LL L L + L PS +++ + + F
Sbjct: 232 GLLSDRLGRRRLLLLIGLLLAALGLLLL-------ALAPSLALLLVALLLLGFGLGFAFP 284
Query: 1593 LPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFG 1652
+ EL P R SG+ F L + LL + G F + +
Sbjct: 285 ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLA 344
Query: 1653 FVFLYIF 1659
+ L +
Sbjct: 345 ALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 529 LMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAEST 588
L D +GR+ L+ + + V+ + + + V R L G+ +G ++V E
Sbjct: 150 LSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFL 209
Query: 589 EPRYRGAILAIVSLAISSGIFISHLLGTFL-HWKTASAVCALFPFISCIFVYSTPESPSW 647
+ R + ++ + S G+ + L+ F+ W+ +L F+ + + PESP W
Sbjct: 210 PKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRW 269
Query: 648 LASKGYSVEAEQA 660
L S+G EA +
Sbjct: 270 LISQGRIEEALKI 282
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-06
Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 5/165 (3%)
Query: 1247 AGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVL 1306
+ Y +L + ++ + + S+ L + +LG L + GRR L++
Sbjct: 188 SFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLI 247
Query: 1307 CIPFIM-GWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLC 1365
+ G ++++LA + ++L L GF LG + P L +E P+ RG S L
Sbjct: 248 GLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFN 307
Query: 1366 TAVAIGIFTAHLLGTFL----HWKTTSAVCALFPCASFIFAYFTP 1406
T ++G LL L + + A + + P
Sbjct: 308 TFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 5/140 (3%)
Query: 1272 GTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRF 1331
G +A A L I L L + +GR+ LV F++ + +L++ + V++ RF
Sbjct: 1 GLLLAGYA-LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARF 59
Query: 1332 LTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTT 1387
L GF + IA+ P+ RGV L+ +A+G LG L W+
Sbjct: 60 LQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAP 119
Query: 1388 SAVCALFPCASFIFAYFTPE 1407
A+ A+FI F
Sbjct: 120 FLFLAILALAAFILLAFLLP 139
|
Length = 141 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 3e-05
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 1 MSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISH 60
++ A+ +WL+ VGRFL GL G P + IAE P+ RG L + S G +
Sbjct: 81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGP 140
Query: 61 LLGTFLH----WKTASAVCALFPFISCIFVY 87
LLG L W+ + A+ + + +
Sbjct: 141 LLGGLLAESLGWRWLFLILAILGLLLALLLL 171
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 16/123 (13%)
Query: 1056 GRRPIAILSTLGTAFSLLGLALMLK---YPQEELPSFIPVILLMSYIVFVSFGVQPLPWI 1112
GRRP+ ++ G A L L ++ + + ++ ++ +I F + G P+PW+
Sbjct: 347 GRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWV 406
Query: 1113 MAGEVRYFTTYYIIHNHLFPQVTREIGSGITTCFGFLALFCAVKTEPLLFRSIGTPGTFG 1172
+ E +FP R G I +LA F P + SIG G F
Sbjct: 407 IVSE-------------IFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFI 453
Query: 1173 LYG 1175
+G
Sbjct: 454 FFG 456
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-04
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 1 MSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISH 60
+ + + V R L G+ +G ++V E + R + ++ + S G+ +
Sbjct: 174 TAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLP 233
Query: 61 LLGTFL-HWKTASAVCALFPFISCIFVYSTPESPSWLASKGYSVEAEQA 108
L+ F+ W+ +L F+ + + PESP WL S+G EA +
Sbjct: 234 LVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKI 282
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 2e-04
Identities = 46/178 (25%), Positives = 70/178 (39%), Gaps = 21/178 (11%)
Query: 1258 LESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVII 1317
L SA + I + + L + L + GR+ L++C+ +
Sbjct: 190 LPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRK-QCLLICLSVNGFFAFF 248
Query: 1318 SLATEVW-VILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAI-GIFTA 1375
S + + L R L+GF +G + P+ Y AE + RG + LC I GI+ A
Sbjct: 249 SSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAA 308
Query: 1376 HL-------------LGT---FLHWKTTSAVCALFPCASFIFAY-FTPESPPWLASKG 1416
+ +G+ F W+ VCA FPC I A F PESP + G
Sbjct: 309 AMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCA-FPCVFAIGALTFMPESPRFFLENG 365
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|183255 PRK11646, PRK11646, multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 25/82 (30%), Positives = 40/82 (48%)
Query: 548 LGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSG 607
G+ M++A E WL+ + L+GL L PP + + P RG +++ + S+G
Sbjct: 88 AGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAG 147
Query: 608 IFISHLLGTFLHWKTASAVCAL 629
I LLG++L VCA
Sbjct: 148 AVIGALLGSWLLQYDFRLVCAT 169
|
Length = 400 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 27/112 (24%), Positives = 46/112 (41%)
Query: 321 ITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLL 380
+ ++ S + MA + D GRR L + F + ++ + AT V L
Sbjct: 49 LDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQL 108
Query: 381 CVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLL 432
+ RFL GL +G L P ++E + ++RG + + G V L
Sbjct: 109 LILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFL 160
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 4e-04
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 4/113 (3%)
Query: 1297 YGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKY 1356
RR L L FI+ ++ +LA V+L R L G A G+ +A A P
Sbjct: 75 LERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK 134
Query: 1357 RGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFPCASFIFAYFT 1405
RG AL+ T + + LGTFL W+ T A+ + + +
Sbjct: 135 RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKL 187
|
Length = 394 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 5e-04
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 15/121 (12%)
Query: 1056 GRRPIAILSTLGTAFSLLGLALMLKYPQEELP-SFIPVILLMSYIVFVSFGVQPLPWIMA 1114
GRRP+ +L G A L L + L + + ++ ++ +I F + G P+PW++
Sbjct: 314 GRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIV 373
Query: 1115 GEVRYFTTYYIIHNHLFPQVTREIGSGITTCFGFLALFCAVKTEPLLFRSIGTPGTFGLY 1174
E LFP R I T +LA F P++ +IG F ++
Sbjct: 374 SE-------------LFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIG-GYVFLVF 419
Query: 1175 G 1175
Sbjct: 420 A 420
|
Length = 449 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 525 LSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYI 584
LS +L D +GR+ L+ FVL + ++++ + ++ + RFL G + I
Sbjct: 17 LSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALI 76
Query: 585 AESTEPRYRGAILAIVSLAISSGIFISHLLGTFL 618
A+ P RG L ++S I+ G + LG L
Sbjct: 77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVL 110
|
Length = 141 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 7e-04
Identities = 46/244 (18%), Positives = 86/244 (35%), Gaps = 69/244 (28%)
Query: 782 IFVYFTPESPSWLASKGYTVQAEKAFHWLRGHSDEFDNELKSILDYANSAEKAFHWLRGH 841
+ +YF PE+P +L S+G QAE IL A
Sbjct: 209 MLLYFVPETPRYLMSRGKQEQAE------------------GILRKIMGNTLA------- 243
Query: 842 SDEFDNELKSIMDYAQNITITNSEDMNYKEKICEWKKNILSPEFLKPFV-ILLVFFFVQQ 900
+ Q I + K+ + ++ + ++L F
Sbjct: 244 --------TQAL---QEIKHSLDHGRKTGGKLLMFGVGVI-------VIGVMLSVF---- 281
Query: 901 FSGASTQFSGASTVSFYSVAILQNVSADVNEYTATMAIDILRVIMSAV--TCGLLRIT-- 956
QF G + V +Y+ I + + A +T + +I+ + T +L I
Sbjct: 282 -----QQFVGINVVLYYAPEIFKTLGA------STDIALLQTIIVGVINLTFTVLAIMTV 330
Query: 957 ---GRRPIAILSSLGTAFSLLGLALMLKYPQEELPSFIPVILLMSYIVFVSFGLQPLPWI 1013
GR+P+ I+ +LG A + L Y Q P + ++ ++ Y+ + P+ W+
Sbjct: 331 DKFGRKPLQIIGALGMAIGMFSLGTAF-YTQ--APGIVALLSMLFYVAAFAMSWGPVCWV 387
Query: 1014 MAGE 1017
+ E
Sbjct: 388 LLSE 391
|
Length = 479 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 7e-04
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 1 MSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISH 60
+ A+ +WL+ V R L GL G P + IA+ P RG L ++S G +
Sbjct: 79 LLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGP 138
Query: 61 LLGTFL----HWKTASAVCALFPFISCIFVY 87
LLG L W+ A + A+ ++ +
Sbjct: 139 LLGGLLASLFGWRAAFLILAILALLAAVLAA 169
|
Length = 346 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-04
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 519 SWIACVLSCILMDL---YGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGL 575
+ + + +L L RR L L F++ ++ ++A ++ + R L GL+ G+
Sbjct: 58 ALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGV 117
Query: 576 SSPPSIVYIAESTEPRYRGAILAIV----SLAISSGIFISHLLGTFLHWKTA 623
+ A P RG LA+V +LA G+ + LG W+
Sbjct: 118 FWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRAT 169
|
Length = 394 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 0.001
Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 34/193 (17%)
Query: 566 RFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFLH------ 619
R + G+ VGL+S S +YIAE RG +++ AI G + + + F+
Sbjct: 127 RIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDAS 186
Query: 620 ------WKTASAVCALFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHSAESE- 672
W+ A A+ + + +Y PE+P +L S+G +AE + G++ ++
Sbjct: 187 WLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQA 246
Query: 673 -SELKSMLNHAQKITITKTENMVDKKKKREWKKNILSPEFLKPFV-ILLVFFFVQQFSGV 730
E+K L+H +K + L + ++L F QQF G+
Sbjct: 247 LQEIKHSLDHGRK----TGGKL-------------LMFGVGVIVIGVMLSVF--QQFVGI 287
Query: 731 NTVAFYSVGILKN 743
N V +Y+ I K
Sbjct: 288 NVVLYYAPEIFKT 300
|
Length = 479 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1693 | |||
| KOG0569|consensus | 485 | 100.0 | ||
| KOG0569|consensus | 485 | 100.0 | ||
| KOG0254|consensus | 513 | 100.0 | ||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0254|consensus | 513 | 100.0 | ||
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| KOG0253|consensus | 528 | 100.0 | ||
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| KOG0253|consensus | 528 | 100.0 | ||
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| KOG0252|consensus | 538 | 99.98 | ||
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.97 | |
| KOG0255|consensus | 521 | 99.97 | ||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.97 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.97 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.97 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.97 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.97 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.96 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.96 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.96 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.96 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.96 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.96 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.96 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.96 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.96 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.96 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.96 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.95 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.95 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.95 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.95 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.94 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.94 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.94 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.94 | |
| KOG0252|consensus | 538 | 99.94 | ||
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.94 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.94 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.94 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.94 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.94 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.93 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.93 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.93 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.93 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.93 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.93 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.93 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.93 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.93 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.92 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.92 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.92 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.92 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.92 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.92 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.92 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.92 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.92 | |
| KOG0255|consensus | 521 | 99.92 | ||
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.92 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.92 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.92 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.92 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.91 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.91 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.91 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.91 | |
| KOG1330|consensus | 493 | 99.91 | ||
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.91 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.91 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.91 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.91 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.91 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.91 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.91 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.91 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.91 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.91 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.91 | |
| KOG2532|consensus | 466 | 99.9 | ||
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.9 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.9 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.9 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.9 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.9 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.89 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.89 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.89 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.89 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.89 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.89 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.89 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.89 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.89 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.89 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.89 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.89 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.89 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.89 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.89 | |
| KOG2533|consensus | 495 | 99.89 | ||
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.88 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.88 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.88 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.88 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.88 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.88 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.88 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.87 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.87 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.87 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.87 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.87 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.87 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.87 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.86 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.86 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.86 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.86 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.86 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.86 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.86 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.86 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.86 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.86 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.85 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.85 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.84 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.84 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.84 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.84 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.84 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.84 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.83 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.83 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.83 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.83 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.83 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.83 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.83 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.82 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.82 | |
| KOG3764|consensus | 464 | 99.82 | ||
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.82 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.81 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.81 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.81 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.81 | |
| KOG2615|consensus | 451 | 99.81 | ||
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.81 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.81 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.81 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.8 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.8 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.8 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.79 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.79 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.79 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.79 | |
| KOG1330|consensus | 493 | 99.79 | ||
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.78 | |
| KOG2532|consensus | 466 | 99.78 | ||
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.78 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.78 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.78 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.77 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.77 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.77 | |
| KOG2504|consensus | 509 | 99.76 | ||
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.76 | |
| KOG3764|consensus | 464 | 99.76 | ||
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.75 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.75 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.75 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.74 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.73 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.73 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.72 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.72 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.7 | |
| KOG2504|consensus | 509 | 99.7 | ||
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.69 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.68 | |
| KOG2533|consensus | 495 | 99.67 | ||
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.67 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.63 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.61 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.61 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.61 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.6 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.6 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.6 | |
| KOG2563|consensus | 480 | 99.59 | ||
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.56 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.56 | |
| KOG2615|consensus | 451 | 99.55 | ||
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.53 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.5 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.49 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.47 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.47 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.47 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.46 | |
| KOG4686|consensus | 459 | 99.46 | ||
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.46 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.46 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.45 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.44 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.44 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.43 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.43 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.39 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.36 | |
| KOG2325|consensus | 488 | 99.3 | ||
| PRK11462 | 460 | putative transporter; Provisional | 99.28 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.27 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.26 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.21 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.2 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.17 | |
| KOG3626|consensus | 735 | 99.16 | ||
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.16 | |
| KOG4686|consensus | 459 | 99.09 | ||
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.03 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.02 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.96 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.95 | |
| KOG2816|consensus | 463 | 98.95 | ||
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.93 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.89 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.82 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.8 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.7 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.7 | |
| KOG2816|consensus | 463 | 98.65 | ||
| KOG2563|consensus | 480 | 98.63 | ||
| KOG3098|consensus | 461 | 98.44 | ||
| KOG2325|consensus | 488 | 98.43 | ||
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.37 | |
| KOG3762|consensus | 618 | 98.35 | ||
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.34 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.23 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.11 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.1 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.96 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.89 | |
| KOG3098|consensus | 461 | 97.83 | ||
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.75 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.69 | |
| KOG0637|consensus | 498 | 97.63 | ||
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.6 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.57 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.51 | |
| KOG4332|consensus | 454 | 97.5 | ||
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.44 | |
| KOG3810|consensus | 433 | 97.37 | ||
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.36 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.23 | |
| KOG3762|consensus | 618 | 97.21 | ||
| KOG3626|consensus | 735 | 97.16 | ||
| KOG4332|consensus | 454 | 97.06 | ||
| KOG3574|consensus | 510 | 97.04 | ||
| KOG1237|consensus | 571 | 97.03 | ||
| KOG0637|consensus | 498 | 97.01 | ||
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.83 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.79 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.34 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.21 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.05 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 95.97 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 95.96 | |
| KOG1479|consensus | 406 | 95.55 | ||
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 95.45 | |
| KOG3810|consensus | 433 | 95.13 | ||
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 94.52 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 94.5 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 93.99 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 93.99 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 93.84 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 93.72 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 90.72 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 89.62 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 88.99 | |
| KOG1479|consensus | 406 | 81.66 | ||
| PRK03612 | 521 | spermidine synthase; Provisional | 81.28 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 81.05 |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=433.08 Aligned_cols=335 Identities=26% Similarity=0.419 Sum_probs=284.6
Q ss_pred CCchHHHHHHHHHHHhhhhcCchhhhhhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHh------hchhhhHHHHHhhH
Q psy10222 3 MATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLL------GTFLHWKTASAVCA 76 (1693)
Q Consensus 3 ~a~~~~~l~vgR~l~G~~~G~~~~~~p~yi~E~aP~~~RG~~~~~~~~~~~~G~~i~~~i------~~~~~Wr~~~~~~~ 76 (1693)
.+++.+++++||++.|++.|...+..|+|++|++|.+.||.++++.+++.++|.+++..+ |++..|++.+++..
T Consensus 112 ~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~ 191 (485)
T KOG0569|consen 112 SAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPL 191 (485)
T ss_pred HhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999999999999765 56668999999999
Q ss_pred HHHHHHHHHHhccccChHHHHh-cCCHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHhhhc
Q psy10222 77 LFPFISCIFVYSTPESPSWLAS-KGYSVEAEQAFHWLRGHSAESESELKSMLNHAQKITITKTENMVDKKKKREWKKNIL 155 (1693)
Q Consensus 77 i~~~i~~~~~~~lpESP~wl~~-~gr~~eA~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 155 (1693)
+|+++.++..+|+|||||||+. |||.|||+++++++||++++ +++.++++++.++ ++.++++..+.++.+.
T Consensus 192 i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~-~~~~e~~~~e~~~-------~~~~~~~~~sl~~~~~ 263 (485)
T KOG0569|consen 192 IPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDV-EAEIEEMLREIEE-------EELEKKKQISLRQLLK 263 (485)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHH-------hccccccCCcHHHHhc
Confidence 9999999999999999999977 99999999999999997543 3333433333221 1122235567888889
Q ss_pred CCCchhHHHHHHhhHHHhhcccchhHHHcHHHHHhhcCCChh-HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHhHH
Q psy10222 156 SPEFLKPFVILLVFFFVQQFSGVNTVAFYSVGILKNVSPDVN-EYVATMAIDIVRVIMSAVTCGLLRITGRRPLALLSSL 234 (1693)
Q Consensus 156 ~~~~~rr~~~~~~~~~~qq~sG~~~i~~Y~~~i~~~~g~~~~-~~~~~~i~~~~~~~~~~~~~~~iDr~GRR~lll~g~~ 234 (1693)
++++|+.+.+++++.++||++|+|++.+|++.+|+++|.+.+ +..++...++++++.++++.+++||+||||+++.+..
T Consensus 264 ~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~ 343 (485)
T KOG0569|consen 264 NPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLS 343 (485)
T ss_pred CcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 999999999999999999999999999999999999998876 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCC--CCcchHHHHHHHHHHHHhhcccccccceeeccccccc----cchHHHhhhhhhhhhHhhh
Q psy10222 235 GTAFSLLGLALILKFPQE--QLPSFIPVILLMSYIVFVSVGLVPLPWIMTGELLAAM----GPIMGDFSSGTAVGFSAVL 308 (1693)
Q Consensus 235 ~~~i~~~~~~~~~~~~~~--~~~~~~~i~~~~l~~~~~~~g~gpi~~~~~~Ei~~~~----~~~~~~~~~~l~~~~~~~~ 308 (1693)
+|.++++++.+.....+. .+..|.+++++++|+++|+.|.||++|.+++|++|+. +.+++...+|+.++++++.
T Consensus 344 ~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~ 423 (485)
T KOG0569|consen 344 LMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFA 423 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988876443222 3456788999999999999999999999999999944 5677788999999999999
Q ss_pred hHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHh-----hhhccccCCchhHH
Q psy10222 309 LPQLQSANSTIPITTEDASWIASMAALPMAVACVLG-----CIAMDSCGRRFSNL 358 (1693)
Q Consensus 309 ~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~-----g~l~d~~Grr~vl~ 358 (1693)
+|.+.+. + +.++++.+++.+.+. -++.|++||...=+
T Consensus 424 fp~l~~~---~----------g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI 465 (485)
T KOG0569|consen 424 FPPLQNV---I----------GPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEI 465 (485)
T ss_pred HHHHHHH---h----------cchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHH
Confidence 9999988 2 224444444443333 34559999986533
|
|
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=399.24 Aligned_cols=444 Identities=26% Similarity=0.385 Sum_probs=381.5
Q ss_pred chhhhHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCC-----CCcc--CCcch----hHHHHHHhHHHHHHHHHHHHHh
Q psy10222 1225 YVRCDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESAN-----STIP--ITPED----GTWIASMASLPTFIACILGSFL 1293 (1693)
Q Consensus 1225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~-----~~~~--is~~~----~~~l~s~~~lg~~ig~l~~G~l 1293 (1693)
+.+++.......+.++++-.+|+.+.+++..+.+.+.. +.++ .++++ .+..++++.+|.++|+.+.|++
T Consensus 4 ~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~l 83 (485)
T KOG0569|consen 4 KLTRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLL 83 (485)
T ss_pred CccHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777778888999999999999887776322 1233 44443 4777899999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHH
Q psy10222 1294 MEMYGRRLTNLVLCIPFIMGWVIISLA---TEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAI 1370 (1693)
Q Consensus 1294 sDr~GRr~~ll~~~~l~~i~~ll~~~a---~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~l 1370 (1693)
+||+|||..++++.++..++++...++ +++++++++|++.|+..|......+.|+.|.+|++.||....+.+.+..+
T Consensus 84 a~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~ 163 (485)
T KOG0569|consen 84 ADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVI 163 (485)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHH
Confidence 999999999999999999988887765 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhh------chhHHHHHHhHHHHHHHHHHhccccCChHHHHh-cCCHHHHHHHHHHHhCCCCchHHHHHHHH
Q psy10222 1371 GIFTAHLLGTF------LHWKTTSAVCALFPCASFIFAYFTPESPPWLAS-KGFTVQAQQAFYWLRGHTAESEFEFKSML 1443 (1693)
Q Consensus 1371 G~~lg~~lg~~------l~WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 1443 (1693)
|.+++.++|.- ..|++.+.+..+++++.++...++|||||||.. ||+.++|++.++++++.++++++..++..
T Consensus 164 g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~ 243 (485)
T KOG0569|consen 164 GILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLR 243 (485)
T ss_pred HHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence 99999766543 279999999999999999999999999999988 89999999999999988754333222222
Q ss_pred HHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHH
Q psy10222 1444 NHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVID 1522 (1693)
Q Consensus 1444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~ 1522 (1693)
+..+++ ..++++.+.++.++++..|+...+.+.+..++++++.+.+.+|...++++.|++ .++...+...+
T Consensus 244 e~~~~~--------~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g 315 (485)
T KOG0569|consen 244 EIEEEE--------LEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIG 315 (485)
T ss_pred HHHHhc--------cccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 111111 112356678999999999999999999999999999999999999999999999 77889999999
Q ss_pred HHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchH---HHHHHHHHHHHHHHhhccccchhhcc
Q psy10222 1523 IVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSF---MPVILLMFYMVFVSIGLQQLPWMMIG 1599 (1693)
Q Consensus 1523 i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~ 1599 (1693)
+..++.++++.+++||.|||++++.+..++.+..+.+ ...........+| ..+...+.+...+..|.+|+.|.+.+
T Consensus 316 ~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~-~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~a 394 (485)
T KOG0569|consen 316 IVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLM-SIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGA 394 (485)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHH
Confidence 9999999999999999999999999999999998888 3333332222122 34567777888999999999999999
Q ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhhcc
Q psy10222 1600 ELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQIEDDFKSK 1678 (1693)
Q Consensus 1600 e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~~~et~~~~~~~~~~~~~~~ 1678 (1693)
|++|++.|+.+.++..+++++.+++....++.+.+..|. ..|.++.+.+.+..++.++++||||+|+..|+.++++++
T Consensus 395 ELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 395 ELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 999999999999999999999999999999999999997 789999999999999999999999999999999988877
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=384.83 Aligned_cols=447 Identities=25% Similarity=0.414 Sum_probs=371.0
Q ss_pred hhhhHHHHHHHHHHhHhhhhhh--hhhhhhhhhhhhcCCCCccCCc----chhHHHHHHhHHHHHHHHHHHHHhhhhchh
Q psy10222 1226 VRCDKLIAAGGPLTATLAAGSA--GAYSAVLLPQLESANSTIPITP----EDGTWIASMASLPTFIACILGSFLMEMYGR 1299 (1693)
Q Consensus 1226 ~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~lp~i~~~~~~~~is~----~~~~~l~s~~~lg~~ig~l~~G~lsDr~GR 1299 (1693)
.............++.+..+++ .+..+++.+.+++......... .+.+|+.+++.+|.++|++++|+++|++||
T Consensus 39 ~~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GR 118 (513)
T KOG0254|consen 39 ISPFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGR 118 (513)
T ss_pred CceehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344555666667777888887 6677777777775322222222 345899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhh
Q psy10222 1300 RLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLG 1379 (1693)
Q Consensus 1300 r~~ll~~~~l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg 1379 (1693)
|++++++.+++.++++++++|+|+++++++|+++|+|.|+...+.+.|++|+.|++.||...+..+....+|..++.+++
T Consensus 119 k~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~ 198 (513)
T KOG0254|consen 119 KKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCIN 198 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhc-----hhHHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhhhcccc
Q psy10222 1380 TFL-----HWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGH-TAESEFEFKSMLNHAERSTITK 1453 (1693)
Q Consensus 1380 ~~l-----~WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 1453 (1693)
... +||..+++..+++++..+..+++||||+|+.++|+.+++++.++++++. +.+.+.+.++++.....+
T Consensus 199 ~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~---- 274 (513)
T KOG0254|consen 199 YGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVE---- 274 (513)
T ss_pred hhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHh----
Confidence 887 5999999999999998888777999999999999999999999999984 344444444444111110
Q ss_pred cchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy10222 1454 SENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPDVNEYTATIVIDIVRVVMAFVTC 1533 (1693)
Q Consensus 1454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~i~~~ig~~~~g 1533 (1693)
......+..+.+.+. +..+++......+..++++++++.+.+|.+.+++..|.+.+.....+..++..+++..++.
T Consensus 275 ---~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~ 350 (513)
T KOG0254|consen 275 ---AEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVAT 350 (513)
T ss_pred ---hhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 000011112333333 7788999999999999999999999999999999998883337778888899999999999
Q ss_pred HhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhcc------CchHHHHHHHHHHHHHHHhhccccchhhccccCccchh
Q psy10222 1534 GLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGL------LPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATR 1607 (1693)
Q Consensus 1534 ~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r 1607 (1693)
+++||+|||++++.+...+.++.+++ +........ ...+..+...+++...+..+.+++.|.+.+|.+|.+.|
T Consensus 351 ~lvd~~gRr~lll~s~~~m~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r 429 (513)
T KOG0254|consen 351 YLVDRFGRRKLLLFGAAGMSICLVIL-AVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLR 429 (513)
T ss_pred HHHHHhccHHHHHHhHHHHHHHHHHH-HHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHH
Confidence 99999999999999999999999988 444333222 23677788888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH-HHhhhccCCCCCCHHHHHHHhhccCcc
Q psy10222 1608 ELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFV-FLYIFLPETKNKTLQQIEDDFKSKTME 1681 (1693)
Q Consensus 1608 ~~a~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v-~~~~~~~et~~~~~~~~~~~~~~~~~~ 1681 (1693)
+.+.++....+++.+++....++.+.+..+....|..+++++.+..+ +.+++.||||++++||+++.++++...
T Consensus 430 ~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~~~ 504 (513)
T KOG0254|consen 430 SKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGIKP 504 (513)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCCch
Confidence 99999999999999999988888877766555678888888888777 788899999999999999888776543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=379.49 Aligned_cols=427 Identities=17% Similarity=0.153 Sum_probs=330.1
Q ss_pred hhhHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHH
Q psy10222 1227 RCDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVL 1306 (1693)
Q Consensus 1227 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~ 1306 (1693)
.+++|.++++++++.+.++++...++.++|.+.+ +++++..+.+++.+++.+|..+|++++|+++||+|||++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~---~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~ 238 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEK---DLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLIC 238 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 3567778888888999999999999999999985 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----
Q psy10222 1307 CIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL---- 1382 (1693)
Q Consensus 1307 ~~l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l---- 1382 (1693)
++++++++++++++++++.++++|+++|+|.|+..+..++++.|++|+++||+.++++..++.+|.++++.++..+
T Consensus 239 lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~ 318 (742)
T TIGR01299 239 LSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHY 318 (742)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998755322
Q ss_pred -------------hhHHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCch----HHHH--HHHH
Q psy10222 1383 -------------HWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAES----EFEF--KSML 1443 (1693)
Q Consensus 1383 -------------~WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~----~~~~--~~~~ 1443 (1693)
+||+++++.+++.++.++..+++||||+|+..++|.+++.+.++++++.+... .... .++.
T Consensus 319 G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~ 398 (742)
T TIGR01299 319 GWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIK 398 (742)
T ss_pred cchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHH
Confidence 69999999999888887777889999999999999999999999997665321 1111 1111
Q ss_pred HHhhhhc--c-cccch-------hhhhhh----hhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc-
Q psy10222 1444 NHAERST--I-TKSEN-------MTDKKK----KLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEV- 1508 (1693)
Q Consensus 1444 ~~~~~~~--~-~~~~~-------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~- 1508 (1693)
.....+. . +.... ...... ...+++ +.++.++++++..+..+++..+ +++.+..|.|.+++..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lf~~~~~~~tl~l~~~wf~~~~-~yygl~~w~P~~~~~~~ 476 (742)
T TIGR01299 399 TIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLR-CFNPEVREITIKLMGVWFTLSF-GYYGLSVWFPDMIKHLQ 476 (742)
T ss_pred HhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHH-HcCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 1000000 0 00000 000000 012333 4466788888888888877666 5888888988775331
Q ss_pred -----------------------------------------CC-------------------------------------
Q psy10222 1509 -----------------------------------------SP------------------------------------- 1510 (1693)
Q Consensus 1509 -----------------------------------------g~------------------------------------- 1510 (1693)
|+
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 556 (742)
T TIGR01299 477 ADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLF 556 (742)
T ss_pred HHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhc
Confidence 00
Q ss_pred ---------------------------------C----chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHH
Q psy10222 1511 ---------------------------------D----VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTC 1553 (1693)
Q Consensus 1511 ---------------------------------s----~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~ 1553 (1693)
+ ...+......+++.+++.+++++++||+|||+++.++.++.+
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsa 636 (742)
T TIGR01299 557 ENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSC 636 (742)
T ss_pred cccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 0 011334566678899999999999999999999999888888
Q ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1554 LSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLF 1633 (1693)
Q Consensus 1554 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~ 1633 (1693)
++++++ +. . .+....+ ...++..++..+..+..+++++|++|++.|+++.|+.+...++|++++|.+.+.+.
T Consensus 637 i~~ll~-~~---~---~s~~~ll-~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~ 708 (742)
T TIGR01299 637 ISCFFL-SF---G---NSESAMI-ALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFV 708 (742)
T ss_pred HHHHHH-HH---H---ccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877665 21 1 1112222 22233334444556778889999999999999999999999999999999998877
Q ss_pred HhcCcchhHHHHHHHHHHHHHHHhhhccCCCCCCH
Q psy10222 1634 LSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTL 1668 (1693)
Q Consensus 1634 ~~~g~~~~f~i~~~~~ll~~v~~~~~~~et~~~~~ 1668 (1693)
+. +...++++.+++.++++++.+ ++|||+++.+
T Consensus 709 ~~-~~~~pf~i~a~~lll~~ll~~-~LPET~~~~l 741 (742)
T TIGR01299 709 GI-TKAAPILFASAALACGGLLAL-KLPDTRGQVL 741 (742)
T ss_pred Hh-hhHHHHHHHHHHHHHHHHHHH-hCCCCccccc
Confidence 64 456778888887777766655 5699998753
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=389.76 Aligned_cols=338 Identities=24% Similarity=0.388 Sum_probs=283.1
Q ss_pred CCCchHHHHHHHHHHHhhhhcCchhhhhhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHhhchh-----hhHHHHHhhH
Q psy10222 2 SMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL-----HWKTASAVCA 76 (1693)
Q Consensus 2 ~~a~~~~~l~vgR~l~G~~~G~~~~~~p~yi~E~aP~~~RG~~~~~~~~~~~~G~~i~~~i~~~~-----~Wr~~~~~~~ 76 (1693)
++|+|++++++||+++|+|.|....++|+|++|++|++.||.+++++|+.+++|++++++++... +||+++++..
T Consensus 137 ~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~ 216 (513)
T KOG0254|consen 137 ALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLAL 216 (513)
T ss_pred HHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999998766 6999999999
Q ss_pred HHHHHHHHHHhccccChHHHHhcCCHHHHHHHHHHhhC-CCCCcHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHhhhc
Q psy10222 77 LFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRG-HSAESESELKSMLNHAQKITITKTENMVDKKKKREWKKNIL 155 (1693)
Q Consensus 77 i~~~i~~~~~~~lpESP~wl~~~gr~~eA~~~L~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 155 (1693)
+|+++..+..+++|||||||+++||.+||+++++++++ ++.+++++.++++.+... +......+..+. .++
T Consensus 217 i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~l~ 288 (513)
T KOG0254|consen 217 IPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLV-------EAEVAEGKASWG-ELF 288 (513)
T ss_pred HHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH-------hhhcccccccHH-Hhc
Confidence 99999999999999999999999999999999999999 455666666666511110 000011111233 366
Q ss_pred CCCchhHHHHHHhhHHHhhcccchhHHHcHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHhHHH
Q psy10222 156 SPEFLKPFVILLVFFFVQQFSGVNTVAFYSVGILKNVSPDVNEYVATMAIDIVRVIMSAVTCGLLRITGRRPLALLSSLG 235 (1693)
Q Consensus 156 ~~~~~rr~~~~~~~~~~qq~sG~~~i~~Y~~~i~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~iDr~GRR~lll~g~~~ 235 (1693)
+|..+||+++++.++.+||++|+|.+.||++++|++.|.+.+....+++.++++++++.++.+++||+|||++++.|..+
T Consensus 289 ~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~ 368 (513)
T KOG0254|consen 289 SPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAG 368 (513)
T ss_pred CcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHH
Confidence 68899999999999999999999999999999999999876657888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCC-----CCCcchHHHHHHHHHHHHhhcccccccceeeccccc----cccchHHHhhhhhhhhhHh
Q psy10222 236 TAFSLLGLALILKFPQ-----EQLPSFIPVILLMSYIVFVSVGLVPLPWIMTGELLA----AMGPIMGDFSSGTAVGFSA 306 (1693)
Q Consensus 236 ~~i~~~~~~~~~~~~~-----~~~~~~~~i~~~~l~~~~~~~g~gpi~~~~~~Ei~~----~~~~~~~~~~~~l~~~~~~ 306 (1693)
|.+++++++....... .....+..++.+++|..+|+.|+||++|++.+|++| .++.+++...+|...+.+.
T Consensus 369 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~ 448 (513)
T KOG0254|consen 369 MSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLIS 448 (513)
T ss_pred HHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHH
Confidence 9999999887644322 223478899999999999999999999999999999 4588899999999999999
Q ss_pred hhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHH--HhhhhccccCCch
Q psy10222 307 VLLPQLQSANSTIPITTEDASWIASMAALPMAVACV--LGCIAMDSCGRRF 355 (1693)
Q Consensus 307 ~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~--~~g~l~d~~Grr~ 355 (1693)
..+|.+.... + .+.....|.....+... +...+.|++||..
T Consensus 449 ~~~~~~~~~~---~-----~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sl 491 (513)
T KOG0254|consen 449 FFFPFITEAL---G-----IGGTFGYFGGICLLSLIIFVFFFVPETKGLTL 491 (513)
T ss_pred HHHHHHHHhc---c-----ccchHHHHHHHHHHHHHHHheEEcccCCCCcH
Confidence 9999998882 2 22333333333333333 4555669999864
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=373.85 Aligned_cols=427 Identities=18% Similarity=0.200 Sum_probs=316.5
Q ss_pred hhHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCC--CCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHH
Q psy10222 1228 CDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESAN--STIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLV 1305 (1693)
Q Consensus 1228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~--~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~ 1305 (1693)
++++..+.++.++.+.+++|...++.+.|.+.++. .+.+.++.+.+++.+.+.+|..++++++|+++||+|||+++..
T Consensus 12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~ 91 (502)
T TIGR00887 12 WQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGM 91 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 45667778888899999999999999999887521 1235566678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh------HHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhh
Q psy10222 1306 LCIPFIMGWVIISLATE------VWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLG 1379 (1693)
Q Consensus 1306 ~~~l~~i~~ll~~~a~~------~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg 1379 (1693)
+.+++.+++++++++++ ++.++++|+++|++.|+..+..+.+++|++|+++|++++++.+....+|.++++.++
T Consensus 92 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~ 171 (502)
T TIGR00887 92 ELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVA 171 (502)
T ss_pred HHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876 789999999999999999999999999999999999999999999999998888765
Q ss_pred hhc---------------------------hhHHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHH-HHHHHHHHHhCC
Q psy10222 1380 TFL---------------------------HWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTV-QAQQAFYWLRGH 1431 (1693)
Q Consensus 1380 ~~l---------------------------~WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~-~a~~~l~~~~~~ 1431 (1693)
..+ +||++|.+.++++++.++..+++||||||+..++|.+ ++++.+++.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~ 251 (502)
T TIGR00887 172 LIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQV 251 (502)
T ss_pred HHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhcc
Confidence 421 5999999999998888888888999999999888874 477777666543
Q ss_pred CCchH-HHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhccc---CchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh
Q psy10222 1432 TAESE-FEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCT---EFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE 1507 (1693)
Q Consensus 1432 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 1507 (1693)
+.+++ ++.++.. ++ + +..+.++++.++++ +.++.++.....++... ..++....+.|.++++
T Consensus 252 ~~~~~~~~~~~~~----~~--------~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~~~p~i~~~ 317 (502)
T TIGR00887 252 KIEAEPDEVEKAS----TA--------V-EVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLD-IAFYGVNLNQKVILSA 317 (502)
T ss_pred ccccCcccccchh----cc--------c-cchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHccccccHHHHHH
Confidence 22111 1110000 00 0 01112455555432 22233333333333322 2345566678888888
Q ss_pred cCCC-chhH------------HHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHH
Q psy10222 1508 VSPD-VNEY------------TATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFM 1574 (1693)
Q Consensus 1508 ~g~s-~~~~------------~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 1574 (1693)
.|++ .++. .......++.+++.+++++++||+|||++++.+..++++++..+ +.... ....+ .
T Consensus 318 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l-~~~~~--~~~~~-~ 393 (502)
T TIGR00887 318 IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVL-GFAYN--HLSTH-G 393 (502)
T ss_pred HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH-HHHHH--hcchh-H
Confidence 7775 2111 12334455677788999999999999999988887777766555 22211 11111 1
Q ss_pred HHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCcchhHHH
Q psy10222 1575 PVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLS----------IGTPETFGL 1644 (1693)
Q Consensus 1575 ~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~----------~g~~~~f~i 1644 (1693)
.....+++..++..+..++.+.+.+|.+|++.|+++.|+.+.++++++++++.+.+.+.+. .|+...+.+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i 473 (502)
T TIGR00887 394 FLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEI 473 (502)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHH
Confidence 1222223333445667778888999999999999999999999999999999999998874 344567888
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCHHHHHH
Q psy10222 1645 YGCITAFGFVFLYIFLPETKNKTLQQIED 1673 (1693)
Q Consensus 1645 ~~~~~ll~~v~~~~~~~et~~~~~~~~~~ 1673 (1693)
++++++++.++. +++||||++++||+++
T Consensus 474 ~~~~~~~~~i~~-~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 474 FALFMFLGILFT-LLIPETKGKSLEELSG 501 (502)
T ss_pred HHHHHHHHHHHh-eEeccCCCCCHHhhhC
Confidence 888888776654 5779999999988754
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=360.89 Aligned_cols=433 Identities=21% Similarity=0.346 Sum_probs=330.6
Q ss_pred hHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCC-----CCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHH
Q psy10222 1229 DKLIAAGGPLTATLAAGSAGAYSAVLLPQLESAN-----STIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTN 1303 (1693)
Q Consensus 1229 ~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~-----~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~l 1303 (1693)
.....+..+.++.+.+++|.+++++..|.+++.. .+++.++.+.+++.+++.+|..++++++|+++||+|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~ 88 (479)
T PRK10077 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL 88 (479)
T ss_pred HHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3455666677888999999999999999888522 23488889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHH
Q psy10222 1304 LVLCIPFIMGWVIISLA------------TEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIG 1371 (1693)
Q Consensus 1304 l~~~~l~~i~~ll~~~a------------~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG 1371 (1693)
+.+.+++.++.++++++ +++..++++|+++|++.|+..+...++++|++|+++||+++++.+.+..+|
T Consensus 89 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G 168 (479)
T PRK10077 89 KIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFG 168 (479)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHH
Confidence 99999999999988874 335788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh------------chhHHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHH
Q psy10222 1372 IFTAHLLGTF------------LHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEF 1439 (1693)
Q Consensus 1372 ~~lg~~lg~~------------l~WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~ 1439 (1693)
.+++++++.. .+||++|++.+++.++..+..+++||+|+|+..+++.+++++..++..+.... +...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~ 247 (479)
T PRK10077 169 QLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLA-TQAL 247 (479)
T ss_pred HHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhH-HHHH
Confidence 9998877542 27999999998888887776777999999998888888887777766543321 1111
Q ss_pred HHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHH
Q psy10222 1440 KSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTAT 1518 (1693)
Q Consensus 1440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~ 1518 (1693)
++.....+. +....+..+. ................+..+++...++.|.+.++.|.+ .......
T Consensus 248 ~~~~~~~~~-------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~ 312 (479)
T PRK10077 248 QEIKHSLDH-------------GRKTGGKLLM--FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQT 312 (479)
T ss_pred HHHHHHHHH-------------hhhhhhhhcc--hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHH
Confidence 111110000 0000011111 01112222233344455556677788999998888887 4566677
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhc
Q psy10222 1519 IVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMI 1598 (1693)
Q Consensus 1519 ~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1598 (1693)
...++..+++.+++++++||+|||+++..+..+++++.+.+ ..... ............+++...+.....+..+.++
T Consensus 313 ~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (479)
T PRK10077 313 IIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSL-GTAFY--TQAPGIVALLSMLFYVAAFAMSWGPVCWVLL 389 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHH-HHHHh--cCcccHHHHHHHHHHHHHHhccccchhHHHh
Confidence 77888899999999999999999999999998888877666 22211 1222223333344444444445567788999
Q ss_pred cccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH------HhcCcchhHHHHHHHHHHHHHHHhhhccCCCCCCHHHHH
Q psy10222 1599 GELFPQATRELGSGISTCFAFLTLFVVVKTGPLLF------LSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQIE 1672 (1693)
Q Consensus 1599 ~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~------~~~g~~~~f~i~~~~~ll~~v~~~~~~~et~~~~~~~~~ 1672 (1693)
+|.+|++.|+++.|+.+..+++++++++.+.+.+. +..++...|.+++++++++.++.+++.||+|+++++|.+
T Consensus 390 ~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 469 (479)
T PRK10077 390 SEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEME 469 (479)
T ss_pred HhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHH
Confidence 99999999999999999999999999988887554 467788889998888888888887788999999999988
Q ss_pred HHhhccCc
Q psy10222 1673 DDFKSKTM 1680 (1693)
Q Consensus 1673 ~~~~~~~~ 1680 (1693)
+.++++++
T Consensus 470 ~~~~~~~~ 477 (479)
T PRK10077 470 ALWEPETK 477 (479)
T ss_pred HHHhhccc
Confidence 88766654
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=313.82 Aligned_cols=425 Identities=16% Similarity=0.146 Sum_probs=338.5
Q ss_pred hhhHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHH
Q psy10222 1227 RCDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVL 1306 (1693)
Q Consensus 1227 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~ 1306 (1693)
.+.+|.......+++..+.+..-..+.+.|.++. ..+++..|.+++++..+.|..+++..||.++|++|||+.+.++
T Consensus 73 grfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~---~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T 149 (528)
T KOG0253|consen 73 GRFQWYLFFVAGMGWMADAMEMMLLSLILPALDE---VWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLT 149 (528)
T ss_pred ccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHh---hhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhh
Confidence 4567888888999999999988888889999885 6778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----
Q psy10222 1307 CIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL---- 1382 (1693)
Q Consensus 1307 ~~l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l---- 1382 (1693)
.+...+...+.++++|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|+..+-.. ..+.+|.+....+....
T Consensus 150 ~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~ 227 (528)
T KOG0253|consen 150 FLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF 227 (528)
T ss_pred HHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 999999999999999999988777 89999999998887766
Q ss_pred hhHHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHH----HHHHH-HHHhhhhcccccchh
Q psy10222 1383 HWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEF----EFKSM-LNHAERSTITKSENM 1457 (1693)
Q Consensus 1383 ~WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~ 1457 (1693)
||||.......+..+.++..+++||||||+..+|+.++|.+.++++...|...-+ +...+ .++.++...++ .+.
T Consensus 228 gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~-~~~ 306 (528)
T KOG0253|consen 228 GWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDD-SKS 306 (528)
T ss_pred hHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhh-hhh
Confidence 9999999999887777788888999999999999999999999998765543211 00000 00111110001 111
Q ss_pred hhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcC--------------------CC-chhHH
Q psy10222 1458 TDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVS--------------------PD-VNEYT 1516 (1693)
Q Consensus 1458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g--------------------~s-~~~~~ 1516 (1693)
+..++.+.-...+..|+.++.++..+.+++...+..+..+ .....+++... .+ ...+.
T Consensus 307 ~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~V-Llttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYr 385 (528)
T KOG0253|consen 307 SAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSV-LLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYR 385 (528)
T ss_pred ccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHH
Confidence 1222333444556678889999999999888776544433 33333443321 11 44566
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchh
Q psy10222 1517 ATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWM 1596 (1693)
Q Consensus 1517 ~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1596 (1693)
..+...+..++|.++++.++||+|||+.+..++++++++.+.+ .... .. . ......+..-++..+.+.+.|+
T Consensus 386 dllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll-----~~c~-~r-n-~~tvllf~arafisg~fqvaYv 457 (528)
T KOG0253|consen 386 DLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLL-----TTCK-TR-N-AYTVLLFTARAFISGAFQVAYV 457 (528)
T ss_pred HHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHH-----HHhc-Cc-c-hhHHHHHHHHHHHhchheEEEE
Confidence 7888899999999999999999999999999999998888777 1111 11 1 1223334444666677788999
Q ss_pred hccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhccCCCCCCH
Q psy10222 1597 MIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTL 1668 (1693)
Q Consensus 1597 ~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~~~et~~~~~ 1668 (1693)
|..|+||+..|+++.|.++..+++|+++.|++. +........+..+++++++++++...++.-|||||++
T Consensus 458 YtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 458 YTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred ecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 999999999999999999999999999999988 5666677788999999999999988888889999874
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-32 Score=344.22 Aligned_cols=435 Identities=24% Similarity=0.460 Sum_probs=331.2
Q ss_pred chhhhHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCcc--------CCcchhHHHHHHhHHHHHHHHHHHHHhhhh
Q psy10222 1225 YVRCDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIP--------ITPEDGTWIASMASLPTFIACILGSFLMEM 1296 (1693)
Q Consensus 1225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~--------is~~~~~~l~s~~~lg~~ig~l~~G~lsDr 1296 (1693)
..+++.+....++.++.++..++....++.+|.+.. +++ .+..+.+++.+++.++..++++++|+++||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~ 97 (481)
T TIGR00879 21 STYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAF---EFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDR 97 (481)
T ss_pred cccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHH---HHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhh
Confidence 344556666667777888899999999999998875 344 448899999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHH
Q psy10222 1297 YGRRLTNLVLCIPFIMGWVIISLAT---EVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIF 1373 (1693)
Q Consensus 1297 ~GRr~~ll~~~~l~~i~~ll~~~a~---~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~ 1373 (1693)
+|||++++.+.+++.+++++++++. +++.++++|+++|+|.|...+...+++.|++|+++|++++++.+.+..+|..
T Consensus 98 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 177 (481)
T TIGR00879 98 FGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGIL 177 (481)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999996654 4558999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh---hhc----hhHHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHh
Q psy10222 1374 TAHLLG---TFL----HWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHA 1446 (1693)
Q Consensus 1374 lg~~lg---~~l----~WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 1446 (1693)
+++.++ ... +||+.|++.++..++.++..+++||+|+++..+++.+++.+..++..+.+.+.....+......
T Consensus 178 ~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (481)
T TIGR00879 178 VAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELID 257 (481)
T ss_pred HHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 999998 443 8999999977777776666777999999988888877777666655444333222211111000
Q ss_pred hhhcccccchhhhhhhhhhhhHhhcccC-chHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHHHH
Q psy10222 1447 ERSTITKSENMTDKKKKLEWKKNILCTE-FLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVIDIV 1524 (1693)
Q Consensus 1447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~i~ 1524 (1693)
... ..+.+..+..+.+.+...+ ..++......+..+..........++.|.+.++.|++ ...+.......++
T Consensus 258 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 331 (481)
T TIGR00879 258 IKR------SIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAV 331 (481)
T ss_pred HHH------HHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 000 0000000111222222211 2344455555555555555667788899998888888 5667777788888
Q ss_pred HHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccC----chHHHHHHHHHHHHHHHhhccccchhhccc
Q psy10222 1525 RVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLL----PSFMPVILLMFYMVFVSIGLQQLPWMMIGE 1600 (1693)
Q Consensus 1525 ~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e 1600 (1693)
.+++.++.+++.||++||+.+..+....+++.+.+ .......... ..+.......++..++..+..+..+.+..|
T Consensus 332 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (481)
T TIGR00879 332 NFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVL-GILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSE 410 (481)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH-HHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhc
Confidence 99999999999999999999988877777766655 2221111111 133444445555566666677888888899
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhccCCCCCCHH
Q psy10222 1601 LFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQ 1669 (1693)
Q Consensus 1601 ~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~~~et~~~~~~ 1669 (1693)
.+|++.|+++.++.+...++++++++.+.+.+.++.|++..|++.+++++++.+..+++.||+|+++.+
T Consensus 411 ~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 411 IFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 999999999999999999999999999999999999999999999999998888888788998877654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=395.79 Aligned_cols=426 Identities=28% Similarity=0.500 Sum_probs=344.9
Q ss_pred HHHhHhhhhhhhhhhhhhhhhhhcCCC-CccC-------CcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHH
Q psy10222 1237 PLTATLAAGSAGAYSAVLLPQLESANS-TIPI-------TPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCI 1308 (1693)
Q Consensus 1237 ~~l~~~~~~~~~~~~~~~lp~i~~~~~-~~~i-------s~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~ 1308 (1693)
+.++.+.+++|....+...+....... ..+. ++.+.+++.+...+|..+|++++|+++||+|||++++.+.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~ 84 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL 84 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 456678999999998877766652111 1111 22356899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh---hHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc---
Q psy10222 1309 PFIMGWVIISLAT---EVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL--- 1382 (1693)
Q Consensus 1309 l~~i~~ll~~~a~---~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l--- 1382 (1693)
+..++++++++++ |++.+.++|+++|++.|+..+..+.|+.|..|+++|++..++.+.++.+|.+++..++...
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 164 (451)
T PF00083_consen 85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY 164 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999 9999999999999999999999999999999999999999999999999999998877654
Q ss_pred -h---hHHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhh
Q psy10222 1383 -H---WKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMT 1458 (1693)
Q Consensus 1383 -~---WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1458 (1693)
+ ||+.+++..+++++.++...++||||||+.+|+|.|||++.++++++.+.++++. ++..++.++
T Consensus 165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~~~---------- 233 (451)
T PF00083_consen 165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEI-EEIKAEKKE---------- 233 (451)
T ss_pred cccccccccccccccccccccccccccccccceecccccccccccccccccccccccccc-ccccccccc----------
Confidence 4 9999999999998888888889999999999999999999998876553322211 111111111
Q ss_pred hhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10222 1459 DKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRI 1538 (1693)
Q Consensus 1459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~i~~~ig~~~~g~l~dr 1538 (1693)
..+.+..+++.+++++++++......+...+++.+.+...+|.+.+++..+.+.+ ........+..+++.+++.++.||
T Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 312 (451)
T PF00083_consen 234 SQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS-FLATLILGLVNFLGTLLAIFLIDR 312 (451)
T ss_pred ccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 1111255677777777778888888888888888888889999999988877733 555566677788888889999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhhccC---chHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHH
Q psy10222 1539 FGRRPLALLSCLGTCLSLLGVASILKFMQGLL---PSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGIST 1615 (1693)
Q Consensus 1539 ~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~ 1615 (1693)
+|||++++.+...++++.+.+ +......... .....+....++...+..+.+++.+.+.+|++|++.|+++.+++.
T Consensus 313 ~GRr~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~ 391 (451)
T PF00083_consen 313 FGRRKLLIIGLLLMAICSLIL-GIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSY 391 (451)
T ss_pred ccccccccccccccccccccc-ccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccc
Confidence 999999999888888777666 2111111111 133444455555567777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHh
Q psy10222 1616 CFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQIEDDF 1675 (1693)
Q Consensus 1616 ~~~~lg~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~~~et~~~~~~~~~~~~ 1675 (1693)
..+++++++.+.+.+.+.+..+....+.++++++++..++.++++||||+++++|+++.+
T Consensus 392 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 392 AVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred ccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 999999999999999888887766788899999999999899999999999999998764
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=341.72 Aligned_cols=389 Identities=20% Similarity=0.272 Sum_probs=297.2
Q ss_pred hhhhhhhcCCCCccCC---cchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy10222 1253 VLLPQLESANSTIPIT---PEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAG 1329 (1693)
Q Consensus 1253 ~~lp~i~~~~~~~~is---~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~~~~~lli~ 1329 (1693)
+..|.+.+ |++++ +.+.++..+++.+|..++++++|+++||+|||++++.+.++..++++++++++|++.++++
T Consensus 110 ~~~~~i~~---e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 186 (505)
T TIGR00898 110 TFSSTIVT---EWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVF 186 (505)
T ss_pred cccccEEE---EecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 45677775 78888 8889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc-hhHHHHHHhHHHHHHHHHHhccccCC
Q psy10222 1330 RFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL-HWKTTSAVCALFPCASFIFAYFTPES 1408 (1693)
Q Consensus 1330 R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l-~WR~~f~i~~i~~~v~lv~~~~lpEs 1408 (1693)
|+++|++.|+..+...+++.|++|+++|+++.++...+..+|.++++.+++.+ +||+.|++.+++.++..+..+++|||
T Consensus 187 r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~es 266 (505)
T TIGR00898 187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPES 266 (505)
T ss_pred HHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999998887 89999999999988887777779999
Q ss_pred hHHHHhcCCHHHHHHHHHHHhCCCCchH-HHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHH
Q psy10222 1409 PPWLASKGFTVQAQQAFYWLRGHTAESE-FEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFF 1487 (1693)
Q Consensus 1409 p~~l~~~~~~~~a~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1487 (1693)
|+|+..+++.+++.+.+++..+.+.... .+..+... +++ ....+++...+++++++..++.++.....++
T Consensus 267 p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 337 (505)
T TIGR00898 267 PRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSL--EKD-------LSSSKKQYSFLDLFRTPNLRKTTLCLMMLWF 337 (505)
T ss_pred hHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhh--hhh-------hhhccCCCcHHHHhCChHHHHHHHHHHHHHH
Confidence 9999999999999998887754433211 11111000 000 0001112356777877777666655544444
Q ss_pred HHHhhhhHHHHHhH-HHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHh
Q psy10222 1488 VQQFSGLNTLIFYT-VGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFM 1566 (1693)
Q Consensus 1488 ~~~~~~~~~~~~~~-p~~~~~~g~s~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~ 1566 (1693)
... ..++. +......+. +.+......++..+++.++.+++.||+|||+.+..+.++.+++++.+ .. .
T Consensus 338 ~~~------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~-~~---~ 405 (505)
T TIGR00898 338 TTA------FSYYGLVLDLGNLGG--NIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLL-LF---V 405 (505)
T ss_pred HHH------HHHHHHhccccccCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-HH---c
Confidence 322 22222 222222233 34556667788889999999999999999999998888777776655 11 1
Q ss_pred hccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q psy10222 1567 QGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYG 1646 (1693)
Q Consensus 1567 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~f~i~~ 1646 (1693)
.....+.. ....+...+...+..+..+.+.+|.+|++.|+++.|+.++..++|++++|.+.+ .+..+...++.+++
T Consensus 406 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~--~~~~~~~~~~~~~~ 481 (505)
T TIGR00898 406 -PVDLYFLR-TALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY--LGEKWLFLPLVLFG 481 (505)
T ss_pred -CCCchHHH-HHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH--HHHHHHhhHHHHHH
Confidence 11212222 222333334444455677889999999999999999999999999999999988 34456677888888
Q ss_pred HHHHHHHHHHhhhccCCCCCCHHH
Q psy10222 1647 CITAFGFVFLYIFLPETKNKTLQQ 1670 (1693)
Q Consensus 1647 ~~~ll~~v~~~~~~~et~~~~~~~ 1670 (1693)
++.+++++.. +++|||++++++|
T Consensus 482 ~~~~~~~~~~-~~lpet~~~~l~~ 504 (505)
T TIGR00898 482 GLALLAGILT-LFLPETKGVPLPE 504 (505)
T ss_pred HHHHHHHHHH-HcCcCCCCCCCCC
Confidence 8888877765 4679999887654
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=303.45 Aligned_cols=428 Identities=17% Similarity=0.167 Sum_probs=319.1
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhhhhhhhhcccccccCCC-------CcccccchhHHHHHHHHHHhhhhhchhHHHHHH
Q psy10222 470 TGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQLESANS-------TIPITPEDGSWIACVLSCILMDLYGRRFTNLIL 542 (1693)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~ 542 (1693)
.+++++|+.....+.+..+.+.+.....+.+.|.....+. .+......|+++|+..+|.++|++|||+.+..+
T Consensus 70 igfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T 149 (528)
T KOG0253|consen 70 IGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLT 149 (528)
T ss_pred cCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhh
Confidence 3568999999888888888887777777767666544432 234556679999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh----
Q psy10222 543 CVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL---- 618 (1693)
Q Consensus 543 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~---- 618 (1693)
....++..++..+++|+..+.+.|.+.|+|+|+ .|...++-.|..|..+|+..+.+. .++.+|......+++..
T Consensus 150 ~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~ 227 (528)
T KOG0253|consen 150 FLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF 227 (528)
T ss_pred HHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 888999999999999999988888 89999999998877665
Q ss_pred hhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCCCCHHHHHHHH---H--Hhhhhhhhhhhhh
Q psy10222 619 HWKTASAVCALFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHSAESESELKSML---N--HAQKITITKTENM 693 (1693)
Q Consensus 619 ~wr~~~~~~~~~~~i~~~~~~~lpESp~~l~~~gr~~~a~~~l~~l~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~ 693 (1693)
+||+......+|..+.+...+++||||||++.+|+.+||.+.++|+++.|..+-+.-.+.. + ++++.+.++.+..
T Consensus 228 gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~ 307 (528)
T KOG0253|consen 228 GWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSS 307 (528)
T ss_pred hHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhc
Confidence 8999999999988888889999999999999999999999999999987765322111110 0 1111111111111
Q ss_pred hhhhhhhhhhhhccCcccHHHHHHHHHHHHHHHhhhhhhHHhcHHHHHHhc-CCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 694 VDKKKKREWKKNILSPEFLKPFVILLVFFFVQQFSGVNTVAFYSVGILKNV-SPDVNEYVATMAIDIVRVIISHMTASAL 772 (1693)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~G~~~~~~Y~~~i~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l 772 (1693)
.+ ++...-...+..|++||++++.+.+|| .|.+.||+..++... ..++|
T Consensus 308 a~-ke~rg~~~nLlsp~lrkttlllw~iwf------gnafsyyg~VLlttelfqsgd----------------------- 357 (528)
T KOG0253|consen 308 AA-KEVRGGTTNLLSPKLRKTTLLLWRIWF------GNAFSYYGSVLLTTELFQSGD----------------------- 357 (528)
T ss_pred cc-cccccchHhhcChHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHhccC-----------------------
Confidence 11 222223345678999999999999999 788889998775431 11111
Q ss_pred HHHHHHHHhHhheeccCCCccccccchhHHHHHhhhhhhccCcccchhHHHHHhhhhhhHHHhhhhhccCcccchhhhhc
Q psy10222 773 CALFPLTSIIFVYFTPESPSWLASKGYTVQAEKAFHWLRGHSDEFDNELKSILDYANSAEKAFHWLRGHSDEFDNELKSI 852 (1693)
Q Consensus 773 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 852 (1693)
.|+.|.|-.. -|.+-+
T Consensus 358 --------------------------------~c~~~~r~~p--------------------------------~e~e~~ 373 (528)
T KOG0253|consen 358 --------------------------------ACPLYNRFLP--------------------------------TELETR 373 (528)
T ss_pred --------------------------------ccccchhcch--------------------------------hHHHhh
Confidence 1111111100 011000
Q ss_pred cccchhccccccccchhhHhHHHHhhcccCcCCccchhHHHHHHHHHhhcccccccCCCceeeeeeehhhhccccccchh
Q psy10222 853 MDYAQNITITNSEDMNYKEKICEWKKNILSPEFLKPFVILLVFFFVQQFSGASTQFSGASTVSFYSVAILQNVSADVNEY 932 (1693)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1693)
..+ -......|
T Consensus 374 -~~c--------------------------------------------------------------------~~s~~~dY 384 (528)
T KOG0253|consen 374 -ANC--------------------------------------------------------------------PLSVAKDY 384 (528)
T ss_pred -hcC--------------------------------------------------------------------CccchhHH
Confidence 000 00112346
Q ss_pred HHHHHHHHHHHHHHHHhhhHhhhccCcceeeecchhhhhhhhhhhhhccCCCccCCcchhHHHHHHHHHHHhcCCccccc
Q psy10222 933 TATMAIDILRVIMSAVTCGLLRITGRRPIAILSSLGTAFSLLGLALMLKYPQEELPSFIPVILLMSYIVFVSFGLQPLPW 1012 (1693)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~GRr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1693)
.+.++.++.++++.++++.++||+|||+.+-.+.+.++++++.+..+.
T Consensus 385 rdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~-------------------------------- 432 (528)
T KOG0253|consen 385 RDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK-------------------------------- 432 (528)
T ss_pred HHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc--------------------------------
Confidence 677889999999999999999999999999888888888887764321
Q ss_pred ccccccceeeeccccceeeeeeeeecCccceeeccccccccccCCcchhhhhhhhhHHHHHHHHHHhcCCCCCCCcchhH
Q psy10222 1013 IMAGEHTELFFLHPSVIVKIFQVKYLGPLTIMSTVTCGLLRITGRRPIAILSTLGTAFSLLGLALMLKYPQEELPSFIPV 1092 (1693)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1092 (1693)
...+..
T Consensus 433 --------------------------------------------------------------------------~rn~~t 438 (528)
T KOG0253|consen 433 --------------------------------------------------------------------------TRNAYT 438 (528)
T ss_pred --------------------------------------------------------------------------CcchhH
Confidence 133445
Q ss_pred HHHHHHHHHHHhCcccccceecccccccceeheecccCCCcchhcccccchhhhhhhhhhhhhhcccceeeecCCCcccc
Q psy10222 1093 ILLMSYIVFVSFGVQPLPWIMAGEVRYFTTYYIIHNHLFPQVTREIGSGITTCFGFLALFCAVKTEPLLFRSIGTPGTFG 1172 (1693)
Q Consensus 1093 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1172 (1693)
+.++...+|.+.+++ ..|++++| +|||.+|++|.|.|+..+++++.+....- +........+.+
T Consensus 439 vllf~arafisg~fq-vaYvYtPE-------------VyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~ 502 (528)
T KOG0253|consen 439 VLLFTARAFISGAFQ-VAYVYTPE-------------VYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIF 502 (528)
T ss_pred HHHHHHHHHHhchhe-EEEEecCc-------------ccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHH
Confidence 667778888887877 55899999 89999999999999999999998887555 445555666777
Q ss_pred ccccchhhhhhC
Q psy10222 1173 LYGKSKTAIRQN 1184 (1693)
Q Consensus 1173 ~~a~~~~~s~~~ 1184 (1693)
+|+.....+.+.
T Consensus 503 vy~~~~ilagIa 514 (528)
T KOG0253|consen 503 VYGALFILAGIA 514 (528)
T ss_pred HHHHHHHHHHHH
Confidence 777776666655
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-30 Score=326.81 Aligned_cols=393 Identities=14% Similarity=0.106 Sum_probs=271.3
Q ss_pred HHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcch-hHHH-----HHHhHHHHHHHHHHHHHhhhhchhHHHHHH
Q psy10222 1232 IAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPED-GTWI-----ASMASLPTFIACILGSFLMEMYGRRLTNLV 1305 (1693)
Q Consensus 1232 ~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~-~~~l-----~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~ 1305 (1693)
..+....++.+++++|..+.+...|.+.+ +++.+.++ .+++ .++.+++..+|++++|+++||+|||+++..
T Consensus 16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~ 92 (490)
T PRK10642 16 KAITAASLGNAMEWFDFGVYGFVAYALGK---VFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 35566678899999999999999999986 55433322 2222 477889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHH--------HHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHH
Q psy10222 1306 LCIPFIMGWVIISLATEVWV--------ILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHL 1377 (1693)
Q Consensus 1306 ~~~l~~i~~ll~~~a~~~~~--------lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~ 1377 (1693)
++++++++++++++++|+++ ++++|+++|+|.|+.++.+..+++|++|+++||++.++...+..+|.++++.
T Consensus 93 ~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~ 172 (490)
T PRK10642 93 TIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAG 172 (490)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999975 8999999999999999999999999999999999999999888888888775
Q ss_pred hhhh------------chhHHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q psy10222 1378 LGTF------------LHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNH 1445 (1693)
Q Consensus 1378 lg~~------------l~WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 1445 (1693)
++.. .+||++|++.+++.++.+++..++||||+|...+++.++..+ + .
T Consensus 173 ~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~----------~---~------- 232 (490)
T PRK10642 173 VVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR----------E---G------- 232 (490)
T ss_pred HHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc----------c---c-------
Confidence 4321 289999999887777666666678999988643322111000 0 0
Q ss_pred hhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHH
Q psy10222 1446 AERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDI 1523 (1693)
Q Consensus 1446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i 1523 (1693)
.. +.++.++++.+++ .++.........++ ....++.+..+.|.++++ .|.+ ...........+
T Consensus 233 -~~-----------~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~ 297 (490)
T PRK10642 233 -LQ-----------DGPKVSFKEIATK--HWRSLLTCIGLVIA-TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMI 297 (490)
T ss_pred -cc-----------ccccCCHHHHHHH--hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 00 0011123333332 23333333333222 233456677788888754 4777 445556666778
Q ss_pred HHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCc
Q psy10222 1524 VRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFP 1603 (1693)
Q Consensus 1524 ~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p 1603 (1693)
+.+++.++.++++||+|||+.+..+.....+....+ . ... ...+.........+...... ........+.+|.+|
T Consensus 298 ~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~-~--~~~-~~~~~~~~~~~~~~~g~~~~-~~~g~~~~~~~~~~p 372 (490)
T PRK10642 298 GMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPA-F--ILI-NSNVIGLIFAGLLMLAVILN-CFTGVMASTLPAMFP 372 (490)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-H--HHH-hCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCC
Confidence 888999999999999999998877765444332222 1 111 11111222222222222222 222334566779999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHHHhhhccCCCCCCH
Q psy10222 1604 QATRELGSGISTCFAFLTLFVVVKTGPLLFLSIG-TPETFGLYGCITAFGFVFLYIFLPETKNKTL 1668 (1693)
Q Consensus 1604 ~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~g-~~~~f~i~~~~~ll~~v~~~~~~~et~~~~~ 1668 (1693)
++.|+++.++......+++.++|.+.+++.+..+ +..++++..+.++++.+.. ++.||++++..
T Consensus 373 ~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pes~~~~~ 437 (490)
T PRK10642 373 THIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMKETANRPL 437 (490)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhccccCCCC
Confidence 9999999998777788888999999998887654 4555555555555555544 45688876543
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.7e-32 Score=310.48 Aligned_cols=432 Identities=17% Similarity=0.162 Sum_probs=328.3
Q ss_pred hhhhHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCc-----cCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhH
Q psy10222 1226 VRCDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTI-----PITPEDGTWIASMASLPTFIACILGSFLMEMYGRR 1300 (1693)
Q Consensus 1226 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~-----~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr 1300 (1693)
..|+....+.++.++.+.|+||...++.+.|.+...+..- |.++...+.+..+.++|-.+||+++|+++||+|||
T Consensus 35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK 114 (538)
T KOG0252|consen 35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRK 114 (538)
T ss_pred hhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 4567778888889999999999999999999988654222 25667789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHH
Q psy10222 1301 LTNLVLCIPFIMGWVIISLATE-------VWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIF 1373 (1693)
Q Consensus 1301 ~~ll~~~~l~~i~~ll~~~a~~-------~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~ 1373 (1693)
+++...+++.++++++++++.. .++|...|++.|+|.|+.+|++.+..+|.+-.++||...+.+...+++|.+
T Consensus 115 ~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil 194 (538)
T KOG0252|consen 115 KVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGIL 194 (538)
T ss_pred hhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence 9999999999999999888632 478899999999999999999999999999999999999999999999888
Q ss_pred HHHHhhhhc-------------------hhHHHHHHhHHHHHHHHHHhccccCChHHHHhc-CCHHHHHHHHHHHhCCCC
Q psy10222 1374 TAHLLGTFL-------------------HWKTTSAVCALFPCASFIFAYFTPESPPWLASK-GFTVQAQQAFYWLRGHTA 1433 (1693)
Q Consensus 1374 lg~~lg~~l-------------------~WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~-~~~~~a~~~l~~~~~~~~ 1433 (1693)
.|.+++-.+ =||..|-+.+++++..+.-++.+|||++|-... ++.++|.+. ..+...
T Consensus 195 aG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d---~~k~~~ 271 (538)
T KOG0252|consen 195 AGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGD---MKKVLS 271 (538)
T ss_pred hccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhc---cccccc
Confidence 887766554 399999999999999999889999999886322 233333211 111111
Q ss_pred chHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC--
Q psy10222 1434 ESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-- 1511 (1693)
Q Consensus 1434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-- 1511 (1693)
. ++..+...+ ......+.....+...+..+ .-+.++..+..|+.... ..|....+...+++..|..
T Consensus 272 ~------~~~~~~~~~----~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDi-afy~~nL~~s~I~~~ig~~~~ 339 (538)
T KOG0252|consen 272 V------DIEAESTAE----SDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDI-AFYGQNLFQSVIFSAIGVIPS 339 (538)
T ss_pred c------ccchhhccc----cCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhh-hhhccccHHHHHHHhhccCCC
Confidence 0 000000000 00000011111223333333 44556666666666555 3666777788888866544
Q ss_pred chh--------HHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHH
Q psy10222 1512 VNE--------YTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYM 1583 (1693)
Q Consensus 1512 ~~~--------~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1583 (1693)
.+. -...++.....++|..++..++|++|||+..+.|+.++++..+.+...+.. ........++..+..
T Consensus 340 ~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~---~~~~~Gf~v~y~l~~ 416 (538)
T KOG0252|consen 340 ANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ---LENTIGFVVLYSLTF 416 (538)
T ss_pred cchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc---ccccCceeehHHHHH
Confidence 121 223444455556688888899999999999999999999988777222211 223344556677777
Q ss_pred HHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCcchhHHHHHHHHHHHHHHHhh
Q psy10222 1584 VFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFL-----SIGTPETFGLYGCITAFGFVFLYI 1658 (1693)
Q Consensus 1584 ~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~-----~~g~~~~f~i~~~~~ll~~v~~~~ 1658 (1693)
++..++....+..+.+|.+|++.|+++.|+..+.+..|++++...+.+..+ ..|.+..++++++++.++.++.+
T Consensus 417 ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~- 495 (538)
T KOG0252|consen 417 FFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL- 495 (538)
T ss_pred HHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE-
Confidence 889999999999999999999999999999999999999999999999998 78999999999999999988776
Q ss_pred hccCCCCCCHHHHHHHhh
Q psy10222 1659 FLPETKNKTLQQIEDDFK 1676 (1693)
Q Consensus 1659 ~~~et~~~~~~~~~~~~~ 1676 (1693)
++||||+|++||++.+.+
T Consensus 496 l~pEtk~~~leei~~e~~ 513 (538)
T KOG0252|consen 496 LIPETKGKSLEEISNEEE 513 (538)
T ss_pred EeecccccCHHHhcChhh
Confidence 567999999999855443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-31 Score=335.28 Aligned_cols=370 Identities=14% Similarity=0.073 Sum_probs=256.8
Q ss_pred HHHhhhhhhhhhHhhhhHHhhhccccCCcccch-hhH-----HHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHH
Q psy10222 293 MGDFSSGTAVGFSAVLLPQLQSANSTIPITTED-ASW-----IASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVL 366 (1693)
Q Consensus 293 ~~~~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~-~~~-----~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~ 366 (1693)
++....|....+++.+.|.+.++ ++.+.++ .++ ..+.+++++++++++.|+++||+|||+++..+++++++
T Consensus 23 ~g~~~~~~d~~~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i 99 (490)
T PRK10642 23 LGNAMEWFDFGVYGFVAYALGKV---FFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSI 99 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45566677778888888988887 5433322 222 25778899999999999999999999999999999999
Q ss_pred HHHHHHhcchhHH--------HHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccc-
Q psy10222 367 GWIIISSATKVWL--------LCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPT- 437 (1693)
Q Consensus 367 ~s~l~~~a~s~~~--------ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~- 437 (1693)
+++++++++|+++ +++.|++||+|.|+.++.+.++++||+|+++||++.++...+..+|.++|+.++.++.
T Consensus 100 ~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~ 179 (490)
T PRK10642 100 STFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLIST 179 (490)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999875 8899999999999999999999999999999999999999988888888876654432
Q ss_pred -------cccCeEEEeecC------------CCccccccc-ccC---c--c-----ccccccc-chh--hHHHHHHHHH-
Q psy10222 438 -------VRHLGLVMALVG------------PLPQRSYLH-LGN---R--L-----FSFSYLT-GYC--LFQLLAAAGP- 483 (1693)
Q Consensus 438 -------~~~gWr~~f~i~------------~~p~~~~~~-~~~---~--~-----~~~~~~~-~~~--~~~~~~~~~~- 483 (1693)
..+|||++|++. ..|+.+... ... + . ....... ..+ ++.+......
T Consensus 180 ~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (490)
T PRK10642 180 IVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRSLLTCIGLV 259 (490)
T ss_pred hcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHhHHHHHHHHHHH
Confidence 368999999886 112211100 000 0 0 0000000 001 1111111111
Q ss_pred HHHHHhhhhhhhhhhhcccc-cccCCC---CcccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHH---HHhc
Q psy10222 484 IFATLGSGMTSGFSAVLLPQ-LESANS---TIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVI---MSMA 556 (1693)
Q Consensus 484 ~~~~~~~~~~~~~~~~~l~~-~~~~~~---~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~---~~~~ 556 (1693)
......+.....+.+.++.+ ++.+.. ........+..+|+++.|+++||+|||+.+..+.+...++.+. ...+
T Consensus 260 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~ 339 (490)
T PRK10642 260 IATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS 339 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11111122222333333321 111111 1122334577788899999999999999888776544433222 2234
Q ss_pred chHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHH-HHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHH
Q psy10222 557 TEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAI-VSLAISSGIFISHLLGTFL-----HWKTASAVCALF 630 (1693)
Q Consensus 557 ~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~lG~~~~~~~~~~~-----~wr~~~~~~~~~ 630 (1693)
++...+++++++.|++.+........++.|..|++.||++.+. +++.... ..+++.+.+.. +|+.++....++
T Consensus 340 ~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~-g~~~p~i~g~l~~~~~~~~~~~~~~~~~ 418 (490)
T PRK10642 340 NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLV-AGLTPTLAAWLVESTQNLMMPAYYLMVV 418 (490)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 5677788899999988877777788899999999999998886 5555444 44555544432 478887777778
Q ss_pred HHHHHHHhhcccCChHHHHhc-----CCHHHHHHHHHHHhC
Q psy10222 631 PFISCIFVYSTPESPSWLASK-----GYSVEAEQAFHWLRG 666 (1693)
Q Consensus 631 ~~i~~~~~~~lpESp~~l~~~-----gr~~~a~~~l~~l~~ 666 (1693)
+++.++..+++||||+|+.+| ||.|||+++++|+++
T Consensus 419 ~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 419 AVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred HHHHHHHHHHhccccCCCCCCccccccchhhHHHHhhcccc
Confidence 888877788899999999865 999999999999973
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-30 Score=328.94 Aligned_cols=436 Identities=19% Similarity=0.213 Sum_probs=320.9
Q ss_pred ccccccccCcchhhhHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhh
Q psy10222 1215 ESKYCEQQSSYVRCDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLM 1294 (1693)
Q Consensus 1215 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~ls 1294 (1693)
++.++.++.+|+.++++......+........+....++..+ .+.++.+.....+..+++++|..+|++++|+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-----~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~ls 142 (521)
T KOG0255|consen 68 PTLDPANPLNWPSWKKWLLVIVICLDGWVYDYGSSVYSIVSE-----WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLS 142 (521)
T ss_pred CccCcCCccccccccccccccccccceeEecCCCCcccccch-----hceeeCcHhHHHHHHHHHHHHHHHHHhhheehH
Confidence 445556677777777776555555544444444444444444 246778888899999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHH
Q psy10222 1295 EMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFT 1374 (1693)
Q Consensus 1295 Dr~GRr~~ll~~~~l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~l 1374 (1693)
||+|||++++.++++..++.+++++++|++.+++.||++|++.++...++..+++|+.++++|+.+.++ ......|..+
T Consensus 143 D~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~ 221 (521)
T KOG0255|consen 143 DRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLM 221 (521)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 6666666666
Q ss_pred HHHhhhhc--hhHHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCC---CchHHHHHHHHHHhhhh
Q psy10222 1375 AHLLGTFL--HWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHT---AESEFEFKSMLNHAERS 1449 (1693)
Q Consensus 1375 g~~lg~~l--~WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~---~~~~~~~~~~~~~~~~~ 1449 (1693)
+++.++++ +|||.+++..+++++.++..++.||||||+..+++.+++.+.+++..+.+ .+.+....... ..+.
T Consensus 222 ~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~-~~~~- 299 (521)
T KOG0255|consen 222 LPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLEL-LLRP- 299 (521)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHH-HhhH-
Confidence 66666655 89999999999999888876667899999999999999999999886543 22222221111 0000
Q ss_pred cccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHH
Q psy10222 1450 TITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPDVNEYTATIVIDIVRVVMA 1529 (1693)
Q Consensus 1450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~i~~~ig~ 1529 (1693)
......+++....++++.+..+++++.....++. ....++...+... +.+.+.+......+....++.
T Consensus 300 -----~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~------~~~~y~gl~~~~~-~lg~~~~~~~~~~~~~~~p~~ 367 (521)
T KOG0255|consen 300 -----LKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFV------FSLVYYGLSLNVS-GLGGNIYLNFTLSGLVELPAY 367 (521)
T ss_pred -----hhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHH------HhHHHHhhhhhhh-hcCchHHHHHHHHHHHHhhHH
Confidence 0111112334567778777777777777776643 2233333332222 333456666666677888899
Q ss_pred HHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHH
Q psy10222 1530 FVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATREL 1609 (1693)
Q Consensus 1530 ~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 1609 (1693)
...+...|+.|||.....+.....++++.. ++.. .....+.......+..++...+.... +.+.+|.+|+..|+.
T Consensus 368 ~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~ 442 (521)
T KOG0255|consen 368 FRNGLLLPEFGRRPPLFLSLFLAGIGLLLF-GWLP---DDLGGWLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNT 442 (521)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHH-HHhh---ccchhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHH
Confidence 999999999999999999999988888777 3322 22221233333333344444444444 889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHhh
Q psy10222 1610 GSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQIEDDFK 1676 (1693)
Q Consensus 1610 a~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~~~et~~~~~~~~~~~~~ 1676 (1693)
+.+..+...+++++++|.+...... ......+.+++....+.+.+..+++|||+++.+.+..++.+
T Consensus 443 ~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 443 AVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHH
Confidence 9999999999999999987654433 44444555567777777777778999999999876544444
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-31 Score=338.58 Aligned_cols=271 Identities=17% Similarity=0.171 Sum_probs=205.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhhhcccccccCC-------CCcccccchhHHHHHHHHHHhhhhhchhHHHHHHHH
Q psy10222 472 YCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQLESAN-------STIPITPEDGSWIACVLSCILMDLYGRRFTNLILCV 544 (1693)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~ 544 (1693)
.+++++...++..+..+.+++........+|.+..+. ..+......|.++|++++|+++||+|||+.++++++
T Consensus 161 ~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li 240 (742)
T TIGR01299 161 HGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS 240 (742)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 3567777777777777777777766666666553221 123345567889999999999999999999999999
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhh-------
Q psy10222 545 PFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTF------- 617 (1693)
Q Consensus 545 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~------- 617 (1693)
+.+++.+++++++++++++++|++.|++.|+..+..++++.|..|++.||...++.+.++.+|.++++.+++.
T Consensus 241 l~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~ 320 (742)
T TIGR01299 241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW 320 (742)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988865422
Q ss_pred ----------hhhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCCCC---HHHH---HHHHHH
Q psy10222 618 ----------LHWKTASAVCALFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHSAES---ESEL---KSMLNH 681 (1693)
Q Consensus 618 ----------~~wr~~~~~~~~~~~i~~~~~~~lpESp~~l~~~gr~~~a~~~l~~l~~~~~~~---~~~~---~~~~~~ 681 (1693)
.+||+++++.+++.++.++..+++||||||+..+||.+||.++++++++.|... +.+. ++....
T Consensus 321 ~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~ 400 (742)
T TIGR01299 321 SFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTI 400 (742)
T ss_pred hhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHh
Confidence 159999999999998888888899999999999999999999999998766431 1111 111111
Q ss_pred hhhhhh---hhhh-hh------hhhhhh----hhhhhhccCcccHHHHHHHHHHHHHHHhhhhhhHHhcHHHHHHhc
Q psy10222 682 AQKITI---TKTE-NM------VDKKKK----REWKKNILSPEFLKPFVILLVFFFVQQFSGVNTVAFYSVGILKNV 744 (1693)
Q Consensus 682 ~~~~~~---~~~~-~~------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~q~~G~~~~~~Y~~~i~~~~ 744 (1693)
.++.+. ++.. .. ..+... ..++ .+++++++++|++++.+|+++.++ .+.+..|.|.+++..
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lf~~~~~~~tl~l~~~wf~~~~~-yygl~~w~P~~~~~~ 475 (742)
T TIGR01299 401 HQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFL-RCFNPEVREITIKLMGVWFTLSFG-YYGLSVWFPDMIKHL 475 (742)
T ss_pred hhhhhhhcccccccchhhcchhhhhhhhhhHHHHHH-HHcCccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 100000 0000 00 000000 1233 367889999999999999988874 777778888887653
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=331.80 Aligned_cols=263 Identities=16% Similarity=0.191 Sum_probs=189.3
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhhhhhhcccccccCC------------CCcccccchhHHHHHHHHHHhhhhhchhHH
Q psy10222 471 GYCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQLESAN------------STIPITPEDGSWIACVLSCILMDLYGRRFT 538 (1693)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~~g~~iG~~~~G~lsDr~GRk~~ 538 (1693)
+++++++.....+.+..+.++++....+...|.+..+. ..+......|..+|+++.|+++||+|||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~ 88 (502)
T TIGR00887 9 PFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRV 88 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 45677887888888888888888877776665543210 012334455888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcch------HHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHH
Q psy10222 539 NLILCVPFVLGWVIMSMATE------VWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISH 612 (1693)
Q Consensus 539 l~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~ 612 (1693)
+.++.++..++.++.+++++ +++++++|++.|++.|+..+..++|++|..|+++||++.++.+.+..+|.++++
T Consensus 89 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~ 168 (502)
T TIGR00887 89 YGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGA 168 (502)
T ss_pred HHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888765 789999999999999999999999999999999999999999999999988887
Q ss_pred Hhhhh---------------------------hhhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCCHH-HHHHHHHHH
Q psy10222 613 LLGTF---------------------------LHWKTASAVCALFPFISCIFVYSTPESPSWLASKGYSV-EAEQAFHWL 664 (1693)
Q Consensus 613 ~~~~~---------------------------~~wr~~~~~~~~~~~i~~~~~~~lpESp~~l~~~gr~~-~a~~~l~~l 664 (1693)
.++.. .+||.++.++++++++.++..+++||||||+..|+|.| ++++.+++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~ 248 (502)
T TIGR00887 169 IVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAV 248 (502)
T ss_pred HHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHH
Confidence 65431 15999999999999988888899999999999998875 577777777
Q ss_pred hCCCCCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhccC---cccHHHHHHHHHHHHHHHhhhhhhHHhcHHHHH
Q psy10222 665 RGHSAESESELKSMLNHAQKITITKTENMVDKKKKREWKKNILS---PEFLKPFVILLVFFFVQQFSGVNTVAFYSVGIL 741 (1693)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~G~~~~~~Y~~~i~ 741 (1693)
++.+.+++. ++..+ . ++++ +..+..+++.+++ ++++++++..+..++.+++. ...+..|.|.++
T Consensus 249 ~~~~~~~~~--~~~~~----~--~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~~~~~p~i~ 315 (502)
T TIGR00887 249 LQVKIEAEP--DEVEK----A--STAV----EVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIA-FYGVNLNQKVIL 315 (502)
T ss_pred hccccccCc--ccccc----h--hccc----cchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHccccccHHHH
Confidence 643321111 11000 0 0000 0011234454432 34445566566666655443 223344566776
Q ss_pred HhcCC
Q psy10222 742 KNVSP 746 (1693)
Q Consensus 742 ~~~~~ 746 (1693)
++.|.
T Consensus 316 ~~~G~ 320 (502)
T TIGR00887 316 SAIGY 320 (502)
T ss_pred HHHcC
Confidence 65554
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-35 Score=370.25 Aligned_cols=384 Identities=27% Similarity=0.463 Sum_probs=307.9
Q ss_pred cccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHhhhhCChhHHHHHHHhccC
Q psy10222 513 ITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMAT---EVWLICVGRFLTGLSVGLSSPPSIVYIAESTE 589 (1693)
Q Consensus 513 ~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p 589 (1693)
.....|..+|++++|+++||+|||++++.+.++..+++++.++++ +++.+.++|++.|++.|+..+..++|+.|..|
T Consensus 53 ~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~ 132 (451)
T PF00083_consen 53 SSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAP 132 (451)
T ss_pred HHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 445568889999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhhh----h---hHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHH
Q psy10222 590 PRYRGAILAIVSLAISSGIFISHLLGTFL----H---WKTASAVCALFPFISCIFVYSTPESPSWLASKGYSVEAEQAFH 662 (1693)
Q Consensus 590 ~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~----~---wr~~~~~~~~~~~i~~~~~~~lpESp~~l~~~gr~~~a~~~l~ 662 (1693)
+++||...++.+..+.+|.+++..+.... + ||..+.++.+++++.++...++|||||||.+|||.|||++.++
T Consensus 133 ~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~ 212 (451)
T PF00083_consen 133 PKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLR 212 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceecccccccccccccc
Confidence 99999999999999999999888766533 4 9999999999999888888999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhccCcccHHHHHHHHHHHHHHHhhhhhhHHhcHHHHHH
Q psy10222 663 WLRGHSAESESELKSMLNHAQKITITKTENMVDKKKKREWKKNILSPEFLKPFVILLVFFFVQQFSGVNTVAFYSVGILK 742 (1693)
Q Consensus 663 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~G~~~~~~Y~~~i~~ 742 (1693)
++++.+.++++. ++..++. ++.++++..+++.++++++++++++.+.++++++++|.+.+.+|.+.+++
T Consensus 213 ~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~ 281 (451)
T PF00083_consen 213 KLRGKEIEDEEI-EEIKAEK----------KESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFE 281 (451)
T ss_pred cccccccccccc-ccccccc----------ccccccceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 976653322221 1111110 01111115667777777789999999999999999999999999988877
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhheeccCCCccccccchhHHHHHhhhhhhccCcccchhHH
Q psy10222 743 NVSPDVNEYVATMAIDIVRVIISHMTASALCALFPLTSIIFVYFTPESPSWLASKGYTVQAEKAFHWLRGHSDEFDNELK 822 (1693)
Q Consensus 743 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1693)
..+.+.+
T Consensus 282 ~~~~~~~------------------------------------------------------------------------- 288 (451)
T PF00083_consen 282 NAGISNS------------------------------------------------------------------------- 288 (451)
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 6554311
Q ss_pred HHHhhhhhhHHHhhhhhccCcccchhhhhccccchhccccccccchhhHhHHHHhhcccCcCCccchhHHHHHHHHHhhc
Q psy10222 823 SILDYANSAEKAFHWLRGHSDEFDNELKSIMDYAQNITITNSEDMNYKEKICEWKKNILSPEFLKPFVILLVFFFVQQFS 902 (1693)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 902 (1693)
T Consensus 289 -------------------------------------------------------------------------------- 288 (451)
T PF00083_consen 289 -------------------------------------------------------------------------------- 288 (451)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCceeeeeeehhhhccccccchhHHHHHHHHHHHHHHHHhhhHhhhccCcceeeecchhhhhhhhhhhhhccC
Q psy10222 903 GASTQFSGASTVSFYSVAILQNVSADVNEYTATMAIDILRVIMSAVTCGLLRITGRRPIAILSSLGTAFSLLGLALMLKY 982 (1693)
Q Consensus 903 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~l~~~~~~~~~~~~~~~~~~~~ 982 (1693)
...+++.++..+++.+++.+++||+|||++++.+..+++++++.++.....
T Consensus 289 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~ 339 (451)
T PF00083_consen 289 -----------------------------FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFL 339 (451)
T ss_pred -----------------------------ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 112223344455677778899999999999999999998888777511110
Q ss_pred CCccCCcchhHHHHHHHHHHHhcCCcccccccccccceeeeccccceeeeeeeeecCccceeeccccccccccCCcchhh
Q psy10222 983 PQEELPSFIPVILLMSYIVFVSFGLQPLPWIMAGEHTELFFLHPSVIVKIFQVKYLGPLTIMSTVTCGLLRITGRRPIAI 1062 (1693)
Q Consensus 983 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1693)
..+ .
T Consensus 340 ~~~-~--------------------------------------------------------------------------- 343 (451)
T PF00083_consen 340 GVS-S--------------------------------------------------------------------------- 343 (451)
T ss_pred ccc-c---------------------------------------------------------------------------
Confidence 000 0
Q ss_pred hhhhhhHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHhCcccccceecccccccceeheecccCCCcchhcccccc
Q psy10222 1063 LSTLGTAFSLLGLALMLKYPQEELPSFIPVILLMSYIVFVSFGVQPLPWIMAGEVRYFTTYYIIHNHLFPQVTREIGSGI 1142 (1693)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~p~~~r~~~~~~ 1142 (1693)
++...+..+.+.+++.++++.|+++++|++++| +|||++|+++.|+
T Consensus 344 ---------------------~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~E-------------lfPt~~R~~~~~~ 389 (451)
T PF00083_consen 344 ---------------------SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAE-------------LFPTKVRSTGIGL 389 (451)
T ss_pred ---------------------ccccccccceeeeeccccccccccccccccccc-------------ccccccccccccc
Confidence 011234445556667778888999999999999 9999999999999
Q ss_pred hhhhhhhhhhhhhhcccceeeecCCCccccccccchhhhhhCCCCCCCCCccchhcccccc
Q psy10222 1143 TTCFGFLALFCAVKTEPLLFRSIGTPGTFGLYGKSKTAIRQNPRWNGRDCLPEVVHSLSRN 1203 (1693)
Q Consensus 1143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~s~~~~~~~~~~~lpe~~~~~~~~ 1203 (1693)
+..++|+++++....+|.+.+..+...+|.+++......... .....||+++.+.++
T Consensus 390 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~----~~~~lpET~g~~l~e 446 (451)
T PF00083_consen 390 SYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIF----VYFFLPETKGKTLEE 446 (451)
T ss_pred ccccccccccccccccccccccccccccchhhHHHHHHHHhh----eeEEEeeCCCCCHHH
Confidence 999999999999999999999999889999999888888877 677788887765544
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-28 Score=284.99 Aligned_cols=369 Identities=18% Similarity=0.190 Sum_probs=288.3
Q ss_pred hHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHH
Q psy10222 1229 DKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCI 1308 (1693)
Q Consensus 1229 ~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~ 1308 (1693)
+.+..++.+.++.|..+.+..+....+|.+.+ |+|+|..+.+++.|.|.++.+++.++...+.||+.||++++..+.
T Consensus 10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~---dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~ 86 (394)
T COG2814 10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAA---DLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLA 86 (394)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHhchHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence 34556677778888899999999999999996 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hh
Q psy10222 1309 PFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HW 1384 (1693)
Q Consensus 1309 l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~W 1384 (1693)
++.++++++++++||+.++++|++.|+..|..++...++.+|+.|+++|++++++...+..++.++|.++|.++ ||
T Consensus 87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GW 166 (394)
T COG2814 87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGW 166 (394)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988887 99
Q ss_pred HHHHHHhHHHHHHHHHHhcc-ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhh
Q psy10222 1385 KTTSAVCALFPCASFIFAYF-TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKK 1463 (1693)
Q Consensus 1385 R~~f~i~~i~~~v~lv~~~~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1463 (1693)
|+.|++.+..+++.++..+. +| |+-. ++ +...+.
T Consensus 167 R~~F~~ia~l~ll~~~~~~~~lP--~~~~--~~-----------------------------------------~~~~~~ 201 (394)
T COG2814 167 RATFLAIAVLALLALLLLWKLLP--PSEI--SG-----------------------------------------SLPGPL 201 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--CccC--CC-----------------------------------------CCCcch
Confidence 99999999999988766654 78 2100 00 000112
Q ss_pred hhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCCh
Q psy10222 1464 LEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRR 1542 (1693)
Q Consensus 1464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr 1542 (1693)
+...+.+++++.+...... .+...+.+..+.|..|.+.+..|++ .......+..+++.++|+.++|++.|| +.|
T Consensus 202 ~~~~~~l~~p~v~~~l~~t----~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~ 276 (394)
T COG2814 202 RTLLRLLRRPGVLLGLLAT----FLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR 276 (394)
T ss_pred hHHHHHhcCchHHHHHHHH----HHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch
Confidence 2345566665544333222 2222233455566777777777888 677888999999999999999999999 888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhcccc--CccchhHHHHHHHHHHHHH
Q psy10222 1543 PLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGEL--FPQATRELGSGISTCFAFL 1620 (1693)
Q Consensus 1543 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~--~p~~~r~~a~g~~~~~~~l 1620 (1693)
+.+.......++..+.+ . . ...+.+.......+ .+....+....+..+. .-++.+..+.+++....++
T Consensus 277 ~~l~~~~~l~a~~~l~l-~---~--~~~~~~~~~~~~~~----wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nl 346 (394)
T COG2814 277 RALIAALLLLALALLAL-T---F--TGASPALALALLFL----WGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNL 346 (394)
T ss_pred hHHHHHHHHHHHHHHHH-H---H--hcchHHHHHHHHHH----HHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHH
Confidence 87777767666666655 1 1 11112222222222 2222223333333333 3357889999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhc
Q psy10222 1621 TLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFL 1660 (1693)
Q Consensus 1621 g~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~~ 1660 (1693)
|..+|..+.+.++++.|+....++.+.+.+++.++.....
T Consensus 347 gia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 347 GIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA 386 (394)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888887765443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=300.90 Aligned_cols=386 Identities=15% Similarity=0.093 Sum_probs=256.7
Q ss_pred hhHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHh---HHHHHHHHHHHHHhhhhchhHHHHH
Q psy10222 1228 CDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMA---SLPTFIACILGSFLMEMYGRRLTNL 1304 (1693)
Q Consensus 1228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~---~lg~~ig~l~~G~lsDr~GRr~~ll 1304 (1693)
.+++..+....++.+++.+|...++.+.|.+.++....+.++.+.++..+++ +++..+|++++|+++||+|||+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~ 97 (432)
T PRK10406 18 RRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSML 97 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 3566677777888999999999999999999863221134555444444444 4555599999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHH
Q psy10222 1305 VLCIPFIMGWVIISLATEVW--------VILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAH 1376 (1693)
Q Consensus 1305 ~~~~l~~i~~ll~~~a~~~~--------~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~ 1376 (1693)
.++++++++++++++++|+. .++++|+++|+|.|+.++.+.++++|++|+++||++.++...+...|.++++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~ 177 (432)
T PRK10406 98 ISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLAL 177 (432)
T ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875 5899999999999999999999999999999999999999888888888877
Q ss_pred Hhhhh------------chhHHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHH
Q psy10222 1377 LLGTF------------LHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLN 1444 (1693)
Q Consensus 1377 ~lg~~------------l~WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 1444 (1693)
+++.. .+||++|++.++++++.+.....+||+|++..++ .
T Consensus 178 ~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~---------------~------------- 229 (432)
T PRK10406 178 LVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA---------------L------------- 229 (432)
T ss_pred HHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh---------------h-------------
Confidence 65332 2899999999888877766666688987531000 0
Q ss_pred HhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHH
Q psy10222 1445 HAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVID 1522 (1693)
Q Consensus 1445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~ 1522 (1693)
+ +..++++.++++ + .+.......+.....++.+..|.|.++++ .|.+ .+.+.......
T Consensus 230 ----~------------~~~~~~~l~~~~---~-~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~ 289 (432)
T PRK10406 230 ----K------------EAGSLKGLWRNR---R-AFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAAL 289 (432)
T ss_pred ----c------------ccccHHHHHhhH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 0 001223344332 1 12222222222223355566778877754 5777 45555566666
Q ss_pred HHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccC
Q psy10222 1523 IVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELF 1602 (1693)
Q Consensus 1523 i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~ 1602 (1693)
++..++.++.|+++||++||+.+..+....++....+ . .......+.+....+. ....+......+..+.+.+|.+
T Consensus 290 ~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~f 365 (432)
T PRK10406 290 FVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPI-L--SALQNVSSPYAAFGLV-MCALLIVSFYTSISGILKAEMF 365 (432)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH-H--HHHHcCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC
Confidence 6777888888999999999988776655443332222 1 1111111112211111 1111111122234567889999
Q ss_pred ccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHHHhhhccCCCCCCH
Q psy10222 1603 PQATRELGSGISTCFAFL-TLFVVVKTGPLLFLSIG-TPETFGLYGCITAFGFVFLYIFLPETKNKTL 1668 (1693)
Q Consensus 1603 p~~~r~~a~g~~~~~~~l-g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~ll~~v~~~~~~~et~~~~~ 1668 (1693)
|++.|+++.|+.+..+++ .+...|.+.+ +.+..| +...+...+++.+++.+..++ .++++|+.
T Consensus 366 p~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~~--l~~~~~~~ 430 (432)
T PRK10406 366 PAQVRALGVGLSYAVANALFGGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLVSLM--LHRKGKGM 430 (432)
T ss_pred CCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHHHHH--hhhccccc
Confidence 999999999999988775 3445666666 445556 434455555555555554443 34455543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=298.95 Aligned_cols=389 Identities=10% Similarity=0.021 Sum_probs=274.9
Q ss_pred hHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHH
Q psy10222 1229 DKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCI 1308 (1693)
Q Consensus 1229 ~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~ 1308 (1693)
++|..+..++++.+++++|....+.+.|.+++ |++.++.+.+++.+++.+++++++++.|+++||+|||+++..+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~ 81 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGK---DLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMV 81 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHh---hcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHH
Confidence 45677777788888999999999999999885 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc------
Q psy10222 1309 PFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL------ 1382 (1693)
Q Consensus 1309 l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l------ 1382 (1693)
++.++++++++++|+++++++|+++|++.|+..+....++.|++|+++|++++++++.+.++|.++++.+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (412)
T TIGR02332 82 LWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL 161 (412)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887643
Q ss_pred ----hhHHHHHHhHHHHHHHHHHh-ccccCChHHHHhcCCHHHHHHH-HHHHhCCCCchHHHHHHHHHHhhhhcccccch
Q psy10222 1383 ----HWKTTSAVCALFPCASFIFA-YFTPESPPWLASKGFTVQAQQA-FYWLRGHTAESEFEFKSMLNHAERSTITKSEN 1456 (1693)
Q Consensus 1383 ----~WR~~f~i~~i~~~v~lv~~-~~lpEsp~~l~~~~~~~~a~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1456 (1693)
+||+.|++.++++++..+.. +++||+|+.. +.-.++.++. .++.+.+..+.++ .+.. .+
T Consensus 162 ~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~----~~- 226 (412)
T TIGR02332 162 MALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQLTLEQ--------PEGA----FA- 226 (412)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHHHHHHHHHHHhccccccc--------cccc----cc-
Confidence 89999999988887665444 5589998420 0000111111 1111111000000 0000 00
Q ss_pred hhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc--CCC-chhHHHHHHHHHHHHHHHHHHH
Q psy10222 1457 MTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEV--SPD-VNEYTATIVIDIVRVVMAFVTC 1533 (1693)
Q Consensus 1457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--g~s-~~~~~~~~~~~i~~~ig~~~~g 1533 (1693)
.........+++.+ ++. .+. ....++......+.+..|.|.++++. +.+ .+.+.......++.+++.++.+
T Consensus 227 ~~~~~~~~~~~~~~-~~~----~~~-~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g 300 (412)
T TIGR02332 227 HAAMPQRSMLREIF-TPA----IML-YTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWS 300 (412)
T ss_pred cccccHHHHHHHhc-ChH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHH
Confidence 00001111222222 222 222 22333334445677788999999874 455 5667778888999999999999
Q ss_pred HhhhhcCChhHH-HHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHH
Q psy10222 1534 GLLRIFGRRPLA-LLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSG 1612 (1693)
Q Consensus 1534 ~l~dr~grr~~l-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g 1612 (1693)
+++||++||+.. ........+.. .+ . .. .. ........ ++....+.....+..+....|.+|++.|+++.|
T Consensus 301 ~l~dr~~~r~~~~~~~~~~~~~~~-~~-~---~~-~~-~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g 372 (412)
T TIGR02332 301 RHSDRLKERKHHTALPYLFAAAGW-LL-A---SA-TD-HNLIQLLG-IIMASMGSFSAMAIFWTTPDQSISLQARAIAIA 372 (412)
T ss_pred HHhcccCccHHHHHHHHHHHHHHH-HH-H---Hh-cC-CHHHHHHH-HHHHHHHhhhhhhHHHhhcccccchHHHHHHHH
Confidence 999999977643 33333333222 11 1 11 11 11211111 112222222223344556678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-cchhHHHHHHHH
Q psy10222 1613 ISTCFAFLTLFVVVKTGPLLFLSIG-TPETFGLYGCIT 1649 (1693)
Q Consensus 1613 ~~~~~~~lg~~i~~~~~~~l~~~~g-~~~~f~i~~~~~ 1649 (1693)
+.+..+++|++++|.+.+.+.+..| |...+++.+++.
T Consensus 373 ~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 373 VINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred HHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 9999999999999999999998875 887777666543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-27 Score=295.15 Aligned_cols=384 Identities=12% Similarity=0.069 Sum_probs=260.1
Q ss_pred hHHHHHHHHHHhHhhhhhhhhhhhhhhhhh-hcCCCCc--cCCcchhHHHH-----HHhHHHHHHHHHHHHHhhhhchhH
Q psy10222 1229 DKLIAAGGPLTATLAAGSAGAYSAVLLPQL-ESANSTI--PITPEDGTWIA-----SMASLPTFIACILGSFLMEMYGRR 1300 (1693)
Q Consensus 1229 ~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i-~~~~~~~--~is~~~~~~l~-----s~~~lg~~ig~l~~G~lsDr~GRr 1300 (1693)
+++..+....++.+.+.+|....+...|.. .+ ++ +.++. .+++. ++.+++..+|+++.|+++||+|||
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr 94 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNR---EFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRK 94 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccH
Confidence 334566777788899999999999887753 32 23 45555 45554 345567789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHH
Q psy10222 1301 LTNLVLCIPFIMGWVIISLATEVW--------VILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGI 1372 (1693)
Q Consensus 1301 ~~ll~~~~l~~i~~ll~~~a~~~~--------~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~ 1372 (1693)
++++.+.++++++++++++++|+. .++++|+++|++.|+.++.+..++.|++|+++|++..+..+.+..+|.
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~ 174 (438)
T PRK09952 95 RMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGL 174 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999987 588999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhh------------chhHHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHH
Q psy10222 1373 FTAHLLGTF------------LHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFK 1440 (1693)
Q Consensus 1373 ~lg~~lg~~------------l~WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 1440 (1693)
+++..+... .+||++|++.+++.++.+.....+||+|+|..++++.++. +
T Consensus 175 ~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~----------~-------- 236 (438)
T PRK09952 175 LLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA----------K-------- 236 (438)
T ss_pred HHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc----------c--------
Confidence 988755432 3899999999887766555555689998764332110000 0
Q ss_pred HHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHH
Q psy10222 1441 SMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTAT 1518 (1693)
Q Consensus 1441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~ 1518 (1693)
++....+..+++++ .........++ .....+....+.|.+.++ .|.+ .......
T Consensus 237 --------------------~~~~~~~~l~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~ 292 (438)
T PRK09952 237 --------------------KRIPVIEALLRHPG---AFLKIIALRLC-ELLTMYIVTAFALNYSTQNLGLPRELFLNIG 292 (438)
T ss_pred --------------------ccCCHHHHHHHchH---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 00000011222221 11112222222 222345555667766654 4666 2222334
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhc
Q psy10222 1519 IVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMI 1598 (1693)
Q Consensus 1519 ~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1598 (1693)
...++..+++.++.|+++||+|||+.+..+.+...++.+.+ .. .. ...+.........+...+......+..++++
T Consensus 293 ~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~-~~--~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 368 (438)
T PRK09952 293 LLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPF-FM--AL-EAQSIFWIVFFSIMLANIAHDMVVCVQQPMF 368 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HH--HH-HcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888899999999999998887766554433322 11 11 1112222222222222333333445567889
Q ss_pred cccCccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc--CcchhHHHHHHHHHHHHHHHhhhccCC
Q psy10222 1599 GELFPQATRELGSGISTCFAF-LTLFVVVKTGPLLFLSI--GTPETFGLYGCITAFGFVFLYIFLPET 1663 (1693)
Q Consensus 1599 ~e~~p~~~r~~a~g~~~~~~~-lg~~i~~~~~~~l~~~~--g~~~~f~i~~~~~ll~~v~~~~~~~et 1663 (1693)
+|.+|++.|+++.++...... +++.++|.+.+.+.+.. ++...+...+++.+++.+..+ ..+|+
T Consensus 369 ~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~-~~~~~ 435 (438)
T PRK09952 369 TEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL-LMKDN 435 (438)
T ss_pred HHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-Hcccc
Confidence 999999999999999776654 89999999999998854 356666666666666666554 44553
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-27 Score=291.81 Aligned_cols=370 Identities=12% Similarity=0.063 Sum_probs=270.1
Q ss_pred hhhHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHH
Q psy10222 1227 RCDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVL 1306 (1693)
Q Consensus 1227 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~ 1306 (1693)
++++|..+..+.++.+....+.....+.+|.+.+ |+|.|+.+.+++.+.+.++..++++++|+++||+|||+++..+
T Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 80 (390)
T PRK03545 4 RKVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQ---SFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGL 80 (390)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHcchHHHHh---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 3455655555566656655555566677898885 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----
Q psy10222 1307 CIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL---- 1382 (1693)
Q Consensus 1307 ~~l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l---- 1382 (1693)
.+++.++++.+++++|+++++++|+++|++.+...+...+++.|++|+++|+++++++..+.++|.+++|.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~ 160 (390)
T PRK03545 81 FVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL 160 (390)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred hhHHHHHHhHHHHHHHHHHhc-cccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhh
Q psy10222 1383 HWKTTSAVCALFPCASFIFAY-FTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKK 1461 (1693)
Q Consensus 1383 ~WR~~f~i~~i~~~v~lv~~~-~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1461 (1693)
+||+.|++.+++.++..+... ++||.|+ +.+ +
T Consensus 161 gw~~~f~~~~~~~~l~~~~~~~~~~~~~~----~~~----------------~--------------------------- 193 (390)
T PRK03545 161 GWRTTFLAIGGGALITLLLLIKLLPLLPS----EHS----------------G--------------------------- 193 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CCc----------------c---------------------------
Confidence 999999999988777654443 3676542 000 0
Q ss_pred hhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy10222 1462 KKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIF 1539 (1693)
Q Consensus 1462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~ 1539 (1693)
+.+..++.++++..+........ .... ......+.+.+.++ .|.+ .+.+......+++.+++.++.+++.||+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~ 268 (390)
T PRK03545 194 SLKSLPLLFRRPALVSLYLLTVV----VVTA-HFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH 268 (390)
T ss_pred hHHHHHHHHhCcHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 00012234444433322221111 1111 22223344444444 5777 5667777778889999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHH
Q psy10222 1540 GRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAF 1619 (1693)
Q Consensus 1540 grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~ 1619 (1693)
+||... .+.....++...+ . . ...+.+... ...+..+.......+.......|..| +.|+++.|+.+...+
T Consensus 269 ~~~~~~-~~~~~~~~~~~~l-~--~---~~~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~ 339 (390)
T PRK03545 269 PSGFLL-IAIALLLVCLLLL-L--P---AANSEWHLS-VLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFN 339 (390)
T ss_pred chhHHH-HHHHHHHHHHHHH-H--H---HhchHHHHH-HHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 988654 3333333333222 1 1 111222222 22223333333444445566667766 678999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhc
Q psy10222 1620 LTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFL 1660 (1693)
Q Consensus 1620 lg~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~~ 1660 (1693)
+|..+++.+.+.+.+..|++..+...+.+.+++.++.++..
T Consensus 340 ~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 340 IGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999988888887776554
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-27 Score=293.44 Aligned_cols=384 Identities=16% Similarity=0.162 Sum_probs=275.9
Q ss_pred hhhHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHH
Q psy10222 1227 RCDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVL 1306 (1693)
Q Consensus 1227 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~ 1306 (1693)
++++|..+..+.++.+.++++....++..|.+++ +++.++.+.+++.+++.++..+++++.|.++||+|||++++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~ 83 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAG---EFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTS 83 (405)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3466777788888899999999999999999985 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----
Q psy10222 1307 CIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL---- 1382 (1693)
Q Consensus 1307 ~~l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l---- 1382 (1693)
.++..++++++++++|++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+.+..+|.++++.+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 163 (405)
T TIGR00891 84 IVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW 163 (405)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888766
Q ss_pred h--hHHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhh
Q psy10222 1383 H--WKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDK 1460 (1693)
Q Consensus 1383 ~--WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1460 (1693)
+ ||+.|++.+++.++.++....+||+|++..++++.++.++..++..+.....+.. .+
T Consensus 164 ~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~ 223 (405)
T TIGR00891 164 GDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANI--------------------VM 223 (405)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhh--------------------hh
Confidence 4 9999998877776666666668998765433222111111111111100000000 00
Q ss_pred hhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHh-hcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10222 1461 KKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISK-EVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRI 1538 (1693)
Q Consensus 1461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr 1538 (1693)
+.....++. .+..+...........+.... ......+.|.+.. +.|.+ .+.+.......++.+++.++.+++.||
T Consensus 224 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr 300 (405)
T TIGR00891 224 TLAAAMVQS--AGKRWPTFVYLVVLVLFANLY-SHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW 300 (405)
T ss_pred hhhHHhhhh--hhhhhHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000110 011111111122222221221 2233445565554 45777 666777778888999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHH
Q psy10222 1539 FGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFA 1618 (1693)
Q Consensus 1539 ~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~ 1618 (1693)
+|||+.+..+....++..... ... ..+.+ ..............+..+....+.+|.+|++.|+++.|+.+...
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~---~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 373 (405)
T TIGR00891 301 LGRRKAYVCSLLAGQLLIIPV---FAI---GANVA-VLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLG 373 (405)
T ss_pred hCchhhhHHHHHHHHHHHHHH---HHh---CCchH-HHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHH
Confidence 999998887766553333222 111 12222 22222233333444455666678899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC-cchhHH
Q psy10222 1619 FLTLFVVVKTGPLLFLSIG-TPETFG 1643 (1693)
Q Consensus 1619 ~lg~~i~~~~~~~l~~~~g-~~~~f~ 1643 (1693)
.+++.++|.+.+.+.+..| ++..+.
T Consensus 374 ~~g~~~g~~~~g~l~~~~g~~~~~~~ 399 (405)
T TIGR00891 374 NLGGALAPIIGALLAQRLDEYGTALA 399 (405)
T ss_pred HHHHHHHHHHHHHHHHhccccchhHH
Confidence 9999999999999999988 655443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-27 Score=293.14 Aligned_cols=370 Identities=16% Similarity=0.150 Sum_probs=269.8
Q ss_pred hHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHH
Q psy10222 1229 DKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCI 1308 (1693)
Q Consensus 1229 ~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~ 1308 (1693)
.++..+..+.++.+.++++.....+.+|.+++ ++|.++.+.+++.+++.++..++++++|+++||+|||+++..+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~ 91 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKA---DLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIV 91 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 44455667778888899999999999999985 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hh
Q psy10222 1309 PFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HW 1384 (1693)
Q Consensus 1309 l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~W 1384 (1693)
+..+++++++++++++.++++|+++|++.|..++....++.|++|+++|+++.++...+..+|.++++.++..+ +|
T Consensus 92 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w 171 (426)
T PRK12307 92 AYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGW 171 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887665 89
Q ss_pred HHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhh
Q psy10222 1385 KTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKL 1464 (1693)
Q Consensus 1385 R~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1464 (1693)
|+.|++..+..++.+......||++++..++.+ ..+++. +. ..+....
T Consensus 172 ~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~------------~~~~~~------------~~--------~~~~~~~ 219 (426)
T PRK12307 172 RAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS------------GKGKHS------------QS--------AWSVFSL 219 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh------------cccccc------------cc--------chhhhhH
Confidence 999998665544433333336777654211100 000000 00 0000112
Q ss_pred hhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChh
Q psy10222 1465 EWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRP 1543 (1693)
Q Consensus 1465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~ 1543 (1693)
.+++.++++..+.... .....+ ..+...+.+..+.|.+.++.|.+ ...+.......++.+++.++.+++.||++||+
T Consensus 220 ~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~ 297 (426)
T PRK12307 220 SMKGLFNRAQFPLTLC-VFIVLF-SIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK 297 (426)
T ss_pred HHHHHHhhchHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 3445555554332222 222222 22223334556778888777877 55566667778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHH
Q psy10222 1544 LALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLF 1623 (1693)
Q Consensus 1544 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~ 1623 (1693)
....+....++..+.+ . .. . ...................+..+....++.|.+|++.|+++.|+......+++.
T Consensus 298 ~~~~~~~~~~~~~~~~-~---~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~ 371 (426)
T PRK12307 298 TFSIGLLMSFLFIFPL-F---RI-P-QDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGT 371 (426)
T ss_pred HHHHHHHHHHHHHHHH-H---HH-c-cccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHH
Confidence 8887776665554433 1 11 1 111221111111111222233344556778999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcchh
Q psy10222 1624 VVVKTGPLLFLSIGTPET 1641 (1693)
Q Consensus 1624 i~~~~~~~l~~~~g~~~~ 1641 (1693)
++|.+.+.+.+..|+...
T Consensus 372 ~gp~~~g~l~~~~g~~~~ 389 (426)
T PRK12307 372 FNSMAATWLGITMGLGAA 389 (426)
T ss_pred HHHHHHHHHHHcccHHHH
Confidence 999999999998886543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=303.49 Aligned_cols=394 Identities=12% Similarity=0.006 Sum_probs=272.9
Q ss_pred hHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHH
Q psy10222 1229 DKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCI 1308 (1693)
Q Consensus 1229 ~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~ 1308 (1693)
..+.++....++.++...|....+.+.|.+.+ |++++..+.+++.+++.+++++++++.|+++||+|||+++..+++
T Consensus 26 ~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~ 102 (467)
T PRK09556 26 PFMQSYLVVFIGYLTMYLIRKNFKAAQNDMIS---TYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLI 102 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHH
Confidence 34556667777778888899999999999985 899999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHh-----hhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc-
Q psy10222 1309 PFIMGWVIISL-----ATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL- 1382 (1693)
Q Consensus 1309 l~~i~~ll~~~-----a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l- 1382 (1693)
+++++....++ ++|++.++++|+++|++.|...+....+++|++|+++||+++++++.+.++|.++++++..++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~ 182 (467)
T PRK09556 103 LSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA 182 (467)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence 88777766655 689999999999999999999999999999999999999999999999999999998876543
Q ss_pred ------hhHHHHHHhHHHHHHHHHHhcc-ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccc
Q psy10222 1383 ------HWKTTSAVCALFPCASFIFAYF-TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSE 1455 (1693)
Q Consensus 1383 ------~WR~~f~i~~i~~~v~lv~~~~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1455 (1693)
+||..|.+.++++++..+..++ .+|+|+....+ +.++ . ..+.. ..++ +..+.+
T Consensus 183 ~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~~~~---~---~~~~~-~~~~------~~~~~~------ 242 (467)
T PRK09556 183 NYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-KAEE---I---FGEPI-SEED------KETEST------ 242 (467)
T ss_pred HhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-Chhh---c---ccCcc-chhh------hccccc------
Confidence 5999998888877766554443 57766421000 0000 0 00000 0000 000000
Q ss_pred hhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHH
Q psy10222 1456 NMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVMAFVTC 1533 (1693)
Q Consensus 1456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g 1533 (1693)
+........+..++++..+ ......++ .........++.|.++++ .|.+ .+++.......++.+++.++.|
T Consensus 243 --~~~~~~~~~~~~l~~~~~~----~~~~~~~~-~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G 315 (467)
T PRK09556 243 --DMTKWQIFVEYVLKNPVIW----LLCFANIF-LYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWG 315 (467)
T ss_pred --cCcHHHHHHHHHHcChHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000111244444322 22222222 222345567888877755 5888 6667777778889999999999
Q ss_pred HhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHH
Q psy10222 1534 GLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGI 1613 (1693)
Q Consensus 1534 ~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~ 1613 (1693)
+++||++||+..........+....+ .+ . ...+.+.... ..+..+....+..........|.+|++.|+++.|+
T Consensus 316 ~lsDr~g~r~~~~~~~~~~~~~~~~~--~~--~-~~~~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi 389 (467)
T PRK09556 316 WLSDLANGRRALVACIALALIIFTLG--VY--Q-HATSEYMYLA-SLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGI 389 (467)
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHH--HH--H-hcCcHHHHHH-HHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHH
Confidence 99999999987665443333322111 11 1 1122222212 22222222222222223556799999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHH------------hcCcchhHHHHHHHHHHHHHHHhh
Q psy10222 1614 STCFAFL-TLFVVVKTGPLLFL------------SIGTPETFGLYGCITAFGFVFLYI 1658 (1693)
Q Consensus 1614 ~~~~~~l-g~~i~~~~~~~l~~------------~~g~~~~f~i~~~~~ll~~v~~~~ 1658 (1693)
.+..+++ |++++|.+.+.+.+ ..||+..|.+..++.+++.+..+.
T Consensus 390 ~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 390 KGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 9999997 77999999999999 568899998888888877665543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-27 Score=291.48 Aligned_cols=375 Identities=17% Similarity=0.165 Sum_probs=281.0
Q ss_pred hHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHH
Q psy10222 1229 DKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCI 1308 (1693)
Q Consensus 1229 ~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~ 1308 (1693)
++|.++..+.+..+.+++|....+...|.+.+ |++.++++.+++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 88 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQ---EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA 88 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 67778888888899999999999999999986 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hh
Q psy10222 1309 PFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HW 1384 (1693)
Q Consensus 1309 l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~W 1384 (1693)
+..++.+++++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..+++.++..+ +|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 168 (406)
T PRK11551 89 LFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAW 168 (406)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988765 89
Q ss_pred HHHHHHhHHHHHHHHHH-hccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhh
Q psy10222 1385 KTTSAVCALFPCASFIF-AYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKK 1463 (1693)
Q Consensus 1385 R~~f~i~~i~~~v~lv~-~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1463 (1693)
|+.|++.++..++..+. ..++||+|++...+++.++ ++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---------------~~~------------------------- 208 (406)
T PRK11551 169 RHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQ---------------RAP------------------------- 208 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchh---------------hhh-------------------------
Confidence 99999988766655543 3458998864322110000 000
Q ss_pred hhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCCh
Q psy10222 1464 LEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRR 1542 (1693)
Q Consensus 1464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr 1542 (1693)
.....++.+.. ++..... ...+......+....+.|.+.++.|.+ .+.+.......++.+++.++.+++.||+|||
T Consensus 209 -~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 285 (406)
T PRK11551 209 -VLRALFGEGRA-TATLLLW-ISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPR 285 (406)
T ss_pred -hHHHHhhhhhh-hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 00000111100 1111111 111222223455666788888888887 6677777888899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHH
Q psy10222 1543 PLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTL 1622 (1693)
Q Consensus 1543 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~ 1622 (1693)
+.+..+....+++.+.+ .. ..+.+. .....++.++...+..+...++..|.+|++.|+++.|+.+....+++
T Consensus 286 ~~~~~~~~~~~~~~~~~----~~---~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 357 (406)
T PRK11551 286 RVVLLIYAGILASLAAL----AA---APSFAG-MLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGS 357 (406)
T ss_pred HHHHHHHHHHHHHHHHH----Hh---cCcHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHH
Confidence 98877665555544433 11 112222 22233333344444566677888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHHHh
Q psy10222 1623 FVVVKTGPLLFLSIG-TPETFGLYGCITAFGFVFLY 1657 (1693)
Q Consensus 1623 ~i~~~~~~~l~~~~g-~~~~f~i~~~~~ll~~v~~~ 1657 (1693)
.++|.+.+.+.+..+ +...+.....+.+++.+..+
T Consensus 358 ~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 358 MAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999988654 33444445445555444444
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=296.65 Aligned_cols=398 Identities=14% Similarity=0.094 Sum_probs=275.6
Q ss_pred HHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHH
Q psy10222 1230 KLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIP 1309 (1693)
Q Consensus 1230 ~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l 1309 (1693)
++.+.....++.+...++....+..+|.+.+ ++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~ 97 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLA---DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIA 97 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHH
Confidence 3445555566677777888888889999985 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhH
Q psy10222 1310 FIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWK 1385 (1693)
Q Consensus 1310 ~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR 1385 (1693)
..++.+++++++|++.+++.|++.|++.|...+...+++.|++|+++|++++++++.+..+|.+++|.+++.+ +||
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~ 177 (434)
T PRK11663 98 TGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWR 177 (434)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888876 999
Q ss_pred HHHHHhHHHHHHHHH-HhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhh
Q psy10222 1386 TTSAVCALFPCASFI-FAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKL 1464 (1693)
Q Consensus 1386 ~~f~i~~i~~~v~lv-~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1464 (1693)
+.|++.+++.++..+ ..+++||+|++...+...+. +++..+. .++ ....+.+..
T Consensus 178 ~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~--------~~~~~~~-----------~~~------~~~~~~~~~ 232 (434)
T PRK11663 178 YGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEW--------RHDALEL-----------AQQ------QEGAGLSRK 232 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccc--------ccccccc-----------chh------ccccCCChh
Confidence 999998887765544 34457888754211100000 0000000 000 000000000
Q ss_pred h-h-hHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHh-hcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhc-
Q psy10222 1465 E-W-KKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISK-EVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIF- 1539 (1693)
Q Consensus 1465 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~- 1539 (1693)
. . ...++++. .+.. .............+..+.|.+++ +.|.+ .+.+.......++.+++.++.|++.||+
T Consensus 233 ~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~ 307 (434)
T PRK11663 233 EILTKYVLLNPY----IWLL-SFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLF 307 (434)
T ss_pred hhHHHHHhcChH----HHHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhc
Confidence 0 1 11223322 1111 12122222234456667787774 45887 6667777788889999999999999998
Q ss_pred -CChhHH-HHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHH
Q psy10222 1540 -GRRPLA-LLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCF 1617 (1693)
Q Consensus 1540 -grr~~l-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~ 1617 (1693)
++|+.. ........+....+ ... ...+..... ......+++..+.......+..|.+|++.|+++.|+.++.
T Consensus 308 ~~~r~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 381 (434)
T PRK11663 308 NGNRGPMNLIFAAGILLSVGSL---WLM--PFASYVMQA-ACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLF 381 (434)
T ss_pred cCCccHHHHHHHHHHHHHHHHH---HHc--ccccHHHHH-HHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHH
Confidence 333332 22222222221111 011 111222221 1122222222222223345678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhccCCCCC
Q psy10222 1618 AFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNK 1666 (1693)
Q Consensus 1618 ~~lg~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~~~et~~~ 1666 (1693)
.++|++++|.+.+.+.+..|+...|...+++.+++++..+...++++++
T Consensus 382 ~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 382 AYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred HHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 9999999999999999999999999999988888877666555444433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=272.16 Aligned_cols=398 Identities=16% Similarity=0.113 Sum_probs=302.2
Q ss_pred hhhHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHH
Q psy10222 1227 RCDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVL 1306 (1693)
Q Consensus 1227 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~ 1306 (1693)
++.|+.++..+.++....++.....+.+.|.+.+ |.+.|.+|.+++.|++.+.++++-.+.|.++||.+.|..+-++
T Consensus 24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e---~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g 100 (448)
T COG2271 24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIE---DGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHH
Confidence 3456678888888888899999999999999995 7789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhh--hhc--
Q psy10222 1307 CIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLG--TFL-- 1382 (1693)
Q Consensus 1307 ~~l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg--~~l-- 1382 (1693)
+++.++.+++.+++++.+.+.++-+++|+..|.-.|.+...++.|+|++|||...++++++.++|..+.|++. +++
T Consensus 101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~ 180 (448)
T COG2271 101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF 180 (448)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887 555
Q ss_pred --hhHHHHHHhHHHHHHHHHHhcc-ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhh
Q psy10222 1383 --HWKTTSAVCALFPCASFIFAYF-TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTD 1459 (1693)
Q Consensus 1383 --~WR~~f~i~~i~~~v~lv~~~~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1459 (1693)
+||..|++.++++++..+..++ ++|+|+- .|- ..+++.+++..+.. +++ +
T Consensus 181 ~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs---~GL-----P~ie~~~~d~~e~~----------~~~---------~ 233 (448)
T COG2271 181 HGGWRAAFYFPGIIAIIVALILLFLLRDRPQS---EGL-----PPIEEYRGDPLEIY----------EEE---------K 233 (448)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCCccc---cCC-----CCHHHhhcCchhhh----------hhh---------c
Confidence 8999999999999887766655 7888841 111 01111111111000 000 0
Q ss_pred hhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc-CCC-chhHHHHHHHHHHHHHHHHHHHHhhh
Q psy10222 1460 KKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEV-SPD-VNEYTATIVIDIVRVVMAFVTCGLLR 1537 (1693)
Q Consensus 1460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~s-~~~~~~~~~~~i~~~ig~~~~g~l~d 1537 (1693)
+.+..+.++++...-.+.+.+....+.....+..=+.+..|.|.++.+. +++ .++.......-.++++|+++.|+++|
T Consensus 234 ~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSD 313 (448)
T COG2271 234 ENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSD 313 (448)
T ss_pred cCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 0011223333333223333333444444444445677889999888775 888 88888889999999999999999999
Q ss_pred hc--CChhHHHH-HHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHH
Q psy10222 1538 IF--GRRPLALL-SCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGIS 1614 (1693)
Q Consensus 1538 r~--grr~~l~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~ 1614 (1693)
|+ |||....+ ..+...++...+ +... ..+.......+...++...+..-+.-....|..|.+..|++.|+.
T Consensus 314 klfkgrR~p~~~i~~~~i~~~~~~~-----w~~~-~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~ 387 (448)
T COG2271 314 KLFKGRRGPMALIFMLLITASLVLY-----WLAP-NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFV 387 (448)
T ss_pred HhcccccchHHHHHHHHHHHHHHHH-----HcCC-CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchh
Confidence 96 56655443 333333333322 2222 224444555555555666666655666778999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhc
Q psy10222 1615 TCFAFL-TLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFL 1660 (1693)
Q Consensus 1615 ~~~~~l-g~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~~ 1660 (1693)
..+.++ |+..+....+.+.|..||...|.++.+.++++.++.....
T Consensus 388 Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 388 GLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred hhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 999999 8888888888888888999999999888888877665443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-26 Score=294.04 Aligned_cols=391 Identities=13% Similarity=0.016 Sum_probs=277.8
Q ss_pred hHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHH
Q psy10222 1229 DKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCI 1308 (1693)
Q Consensus 1229 ~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~ 1308 (1693)
|+|..+..++++.++...|.++++.++|.+.+ |+|.+.++.+|+.+.|.++.+++++++|+++||+|||++++.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~---~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~ 79 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSM---TLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGT 79 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 56778889999999999999999999999995 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhcc-CCCcchhhhHHHHHHHHHHHHHHHHhhhhc----h
Q psy10222 1309 PFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETT-EPKYRGVLSALLCTAVAIGIFTAHLLGTFL----H 1383 (1693)
Q Consensus 1309 l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~-p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~ 1383 (1693)
++.++++++++++|++.++++|+++|+|.++..+.....+.+.+ |+++|+++.+++.....+|..+||.+++.+ +
T Consensus 80 ~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g 159 (495)
T PRK14995 80 LFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY 159 (495)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999998888887765 679999999999999999999999999988 8
Q ss_pred hHHHHHHhHHHHHHHHHHh-ccccCChHHHHhcCCHHHHHHH------------HHHHhCCCCchHHHHHHHHHHhhhhc
Q psy10222 1384 WKTTSAVCALFPCASFIFA-YFTPESPPWLASKGFTVQAQQA------------FYWLRGHTAESEFEFKSMLNHAERST 1450 (1693)
Q Consensus 1384 WR~~f~i~~i~~~v~lv~~-~~lpEsp~~l~~~~~~~~a~~~------------l~~~~~~~~~~~~~~~~~~~~~~~~~ 1450 (1693)
|||+|++..++.++.+++. +++||+|+. ++++.|..... ++......................-
T Consensus 160 wr~~f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 236 (495)
T PRK14995 160 WGSVFLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLL- 236 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH-
Confidence 9999999988877765544 447876531 11111111110 0000000000000000000000000
Q ss_pred ccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc-CCC-chhHHHHHHHHHHHHHH
Q psy10222 1451 ITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEV-SPD-VNEYTATIVIDIVRVVM 1528 (1693)
Q Consensus 1451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~s-~~~~~~~~~~~i~~~ig 1528 (1693)
......+...+.+....+.++++.+....... +......+...++.|.+++.. |++ .+++....+..++..++
T Consensus 237 ~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~ 311 (495)
T PRK14995 237 GLFIRTQLAASRPMIDMRLFTHRIILSGVVMA-----MTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFS 311 (495)
T ss_pred HHHHHHHhcCCCCCcCHHHhCCcccHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 00000000111122224566665443322222 222223455667788887764 888 88889999999999999
Q ss_pred HHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhH
Q psy10222 1529 AFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRE 1608 (1693)
Q Consensus 1529 ~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~ 1608 (1693)
.++.|++.||+|+|+.+..+....+++.+.+ .. .....+.+.... .....+.+.....+.......+..|++.++
T Consensus 312 ~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l-~~---~~~~~~~~~~~~-~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g 386 (495)
T PRK14995 312 GPIAGILVSRLGLRLVATGGMALSALSFYGL-AM---TDFSTQQWQAWG-LMALLGFSAASALLASTSAIMAAAPPEKAA 386 (495)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHH-HH---hcCCCchHHHHH-HHHHHHHhHHHHHHHHHHHHHhcCCHHhcc
Confidence 9999999999999998887777766665544 11 112222233222 223333333334444555667888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10222 1609 LGSGISTCFAFLTLFVVVKTGPLLFLS 1635 (1693)
Q Consensus 1609 ~a~g~~~~~~~lg~~i~~~~~~~l~~~ 1635 (1693)
.+.++.++.+.+|+.+|+.+.+.++++
T Consensus 387 ~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 387 AAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988764
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-26 Score=288.48 Aligned_cols=357 Identities=17% Similarity=0.196 Sum_probs=244.7
Q ss_pred HHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHH-HHHhH-----HHHHHHHHHHHHhhhhchhHHHH
Q psy10222 1230 KLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWI-ASMAS-----LPTFIACILGSFLMEMYGRRLTN 1303 (1693)
Q Consensus 1230 ~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l-~s~~~-----lg~~ig~l~~G~lsDr~GRr~~l 1303 (1693)
|+.....+.++.+++.+|.+.++...|.+.+ |++.++.+.+++ .+... ++..+|+++.|+++||+|||+++
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l 89 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFFLFGFYATAIAK---TFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL 89 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH
Confidence 4446788888999999999999999999996 788887776544 33332 22347899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHH
Q psy10222 1304 LVLCIPFIMGWVIISLATEVW--------VILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTA 1375 (1693)
Q Consensus 1304 l~~~~l~~i~~ll~~~a~~~~--------~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg 1375 (1693)
+.+.+++.++++++++++|++ .++++|+++|++.|...+....+++|++|+++|++++++......+|..++
T Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g 169 (434)
T PRK15075 90 IVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFA 169 (434)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 468999999999999999999999999999999999999888877777777
Q ss_pred HHhhhh------------chhHHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHH
Q psy10222 1376 HLLGTF------------LHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSML 1443 (1693)
Q Consensus 1376 ~~lg~~------------l~WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 1443 (1693)
+.++.. .+||++|++..+...+.+......||++++..++++ .
T Consensus 170 ~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-------------~------------ 224 (434)
T PRK15075 170 ALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHR-------------P------------ 224 (434)
T ss_pred HHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhc-------------c------------
Confidence 666554 289999998655433333322334555422110000 0
Q ss_pred HHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHH
Q psy10222 1444 NHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVI 1521 (1693)
Q Consensus 1444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~ 1521 (1693)
+ .+...+...++ ++....... ..+.+...++.+.+|.|.++++ .|.+ .+.+......
T Consensus 225 -----~------------~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~ 283 (434)
T PRK15075 225 -----S------------MREIFRSLAAN---WRIVLAGML-MVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCV 283 (434)
T ss_pred -----c------------cccHHHHHHHh---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 0 00000111111 112222222 2222334466778888988876 4887 5566677778
Q ss_pred HHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhcccc
Q psy10222 1522 DIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGEL 1601 (1693)
Q Consensus 1522 ~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~ 1601 (1693)
.++.+++.++.|+++||+|||+.+..+.....+..... ....... +....................+..+.+..|.
T Consensus 284 ~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~ 359 (434)
T PRK15075 284 GVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPA---LSWLVAA-PSFARMLAVELWLSFLYGSYNGAMVVALTEV 359 (434)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH---HHHHHcC-CchHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 88899999999999999999998776654433221111 0111111 1111111111112222223344455778899
Q ss_pred CccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCcc
Q psy10222 1602 FPQATRELGSGISTCFAFL-TLFVVVKTGPLLFLSIGTP 1639 (1693)
Q Consensus 1602 ~p~~~r~~a~g~~~~~~~l-g~~i~~~~~~~l~~~~g~~ 1639 (1693)
+|++.|+++.++...+... ++.++|.+.+.+.+..|++
T Consensus 360 ~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 360 MPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred CCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 9999999999997666655 5888999999999988864
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=278.14 Aligned_cols=342 Identities=18% Similarity=0.134 Sum_probs=271.6
Q ss_pred chHHHhhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHH
Q psy10222 291 PIMGDFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWII 370 (1693)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l 370 (1693)
.+++.+..++..++...++|.+.+| +++|..++|+..+.|.++++++.++...+.||++||++++..+.+|.+++++
T Consensus 18 La~~~F~igttEfv~~gLLp~iA~d---l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l 94 (394)
T COG2814 18 LALAAFAIGTTEFVPVGLLPPIAAD---LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLL 94 (394)
T ss_pred HHHHHHHHHhHHHHHHhchHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHH
Confidence 4577788889999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhcchhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC-
Q psy10222 371 ISSATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG- 449 (1693)
Q Consensus 371 ~~~a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~- 449 (1693)
|++|||++.++++|++.|+..|..++.+.++.+|..||+||++++|++..|.+++.++|.|+|.++.+.+|||+.|++.
T Consensus 95 ~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia 174 (394)
T COG2814 95 SALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIA 174 (394)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ------------CCc-ccccccccCcccc-cccccchhhHHHHHHHHH-HHHHHhhhhhhhhhhhcccccccC-CCC---
Q psy10222 450 ------------PLP-QRSYLHLGNRLFS-FSYLTGYCLFQLLAAAGP-IFATLGSGMTSGFSAVLLPQLESA-NST--- 510 (1693)
Q Consensus 450 ------------~~p-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~-~~~--- 510 (1693)
..| .... +.+..+ .+.....++.+....... .+....+...+++..+++.+...- ...
T Consensus 175 ~l~ll~~~~~~~~lP~~~~~---~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~ 251 (394)
T COG2814 175 VLALLALLLLWKLLPPSEIS---GSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSL 251 (394)
T ss_pred HHHHHHHHHHHHhCCCccCC---CCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHH
Confidence 334 1110 111000 112222334444333333 333333344556666666544321 111
Q ss_pred cccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhhhhCChhHHHHHHHhccC
Q psy10222 511 IPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSM-ATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTE 589 (1693)
Q Consensus 511 ~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~-~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p 589 (1693)
.-+....+.++|+.++|+++|| +.|+.+.....+..+..+...+ .++.+...+.-++.|++.+.......+..++ .-
T Consensus 252 ~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~ 329 (394)
T COG2814 252 VLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LA 329 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cC
Confidence 2345566889999999999999 8888888877777666655555 4566677777778888888777777777777 44
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHhhc
Q psy10222 590 PRYRGAILAIVSLAISSGIFISHLLGTFL----HWKTASAVCALFPFISCIFVYS 640 (1693)
Q Consensus 590 ~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~~~ 640 (1693)
|+.++.+.++++..+++|..+|..+++.. ++....+++++..++++...++
T Consensus 330 p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 330 PDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999888766 7888888888888877766543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=280.19 Aligned_cols=347 Identities=12% Similarity=0.040 Sum_probs=242.8
Q ss_pred hhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy10222 1248 GAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVIL 1327 (1693)
Q Consensus 1248 ~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~~~~~ll 1327 (1693)
....++.+|.+++ |+++|+.+.+++.+.+.+++.+++++.|+++||+|||+++..++.....+.+....++|+++++
T Consensus 7 ~~~~~~~lp~i~~---~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (368)
T TIGR00903 7 WVTFSPVLSLVAE---DIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLL 83 (368)
T ss_pred HHHHHhhHHHHHH---HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 4456788899986 8999999999999999999999999999999999999987766665555544333448999999
Q ss_pred HHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHHHHHHHHHh-
Q psy10222 1328 AGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFPCASFIFA- 1402 (1693)
Q Consensus 1328 i~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~~v~lv~~- 1402 (1693)
++|+++|+|.|. .......++|++|+++|++++++.+.+..+|.+++++++..+ +||+.|++.++++++..+..
T Consensus 84 ~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~ 162 (368)
T TIGR00903 84 ACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVL 162 (368)
T ss_pred HHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999986 566666779999999999999999999999999999998888 99999999888877765544
Q ss_pred ccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHH
Q psy10222 1403 YFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAII 1482 (1693)
Q Consensus 1403 ~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1482 (1693)
+++||+|++. ++ . .+.+ +..+.++++++++..+ .
T Consensus 163 ~~lp~~p~~~---~~-------------~-~~~~------------------------~~~~~~~~ll~~~~~~-----~ 196 (368)
T TIGR00903 163 AALPALPFQA---AE-------------G-FGFK------------------------DAVKEFGALAGRKDLW-----I 196 (368)
T ss_pred HHcCCCCCCC---CC-------------C-cchH------------------------HHHHHHHHHHcChhHH-----H
Confidence 4589998641 10 0 0000 0001234566654432 2
Q ss_pred HHHHHHHHhhhhHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCh---hHHHH-HHHHHHHHHHH
Q psy10222 1483 LVFFFVQQFSGLNTLIFYTVGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRR---PLALL-SCLGTCLSLLG 1558 (1693)
Q Consensus 1483 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr---~~l~~-~~~~~~i~~~~ 1558 (1693)
.....+......+.+..|.|.++++.|++.+.+.......+ .+.+..+++.||..|| +.... .....++....
T Consensus 197 ~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~~---~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~ 273 (368)
T TIGR00903 197 IGAILGFGVALFDNLAIWLEAALRPAGLEDIAGDAVALAIL---AGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLA 273 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHH---HHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 22223334445667788999999887777333333333333 3444457788887654 32222 22222222222
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q psy10222 1559 VASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGT 1638 (1693)
Q Consensus 1559 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~g~ 1638 (1693)
+ .. . .+.+... .......++.....+..+++.+|.+|++.|+++.|+.+..+++++..+|.+.+.+.. |.
T Consensus 274 ~----~~--~-~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~ 343 (368)
T TIGR00903 274 L----AF--E-LNRLALF-AFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SA 343 (368)
T ss_pred H----HH--c-cccHHHH-HHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CH
Confidence 2 11 1 1122222 222223344444445677889999999999999999999999999999999987773 66
Q ss_pred chhHHHHHHHHHHHHHHHh
Q psy10222 1639 PETFGLYGCITAFGFVFLY 1657 (1693)
Q Consensus 1639 ~~~f~i~~~~~ll~~v~~~ 1657 (1693)
...|.++++..+++.+...
T Consensus 344 ~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 344 EAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6788888888887777654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=288.91 Aligned_cols=414 Identities=16% Similarity=0.156 Sum_probs=279.5
Q ss_pred hHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHH
Q psy10222 1229 DKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCI 1308 (1693)
Q Consensus 1229 ~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~ 1308 (1693)
+++..+..+.++.+++.++....++.+|.+.+ ++|.++.+.+++.+.+.++..+++++.|+++||+|||++++.+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 93 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQG---EFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 45556667778888999999999999999985 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hh
Q psy10222 1309 PFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HW 1384 (1693)
Q Consensus 1309 l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~W 1384 (1693)
+..++.+++++++|++.++++|+++|++.++..+....++.|++|+++|+++.++...+..+|..++|.+++.+ +|
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w 173 (496)
T PRK03893 94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGW 173 (496)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988876 89
Q ss_pred HHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHH-Hhhhhcccccchhhhhhh-
Q psy10222 1385 KTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLN-HAERSTITKSENMTDKKK- 1462 (1693)
Q Consensus 1385 R~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 1462 (1693)
|+.|++..++.++.++....+||++++..++++.++.++..+.....+............ ........... ......
T Consensus 174 ~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 252 (496)
T PRK03893 174 RALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNL-QNAAIVA 252 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhh-cchhHHH
Confidence 999998666555444444557888765433222111111111111110000000000000 00000000000 000000
Q ss_pred ------hhhhhH-hhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHh-hcCCC-chhHHHHHHHHHHHHHHHHHHH
Q psy10222 1463 ------KLEWKK-NILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISK-EVSPD-VNEYTATIVIDIVRVVMAFVTC 1533 (1693)
Q Consensus 1463 ------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s-~~~~~~~~~~~i~~~ig~~~~g 1533 (1693)
...... ....+..+++.........+..+........+.|.+++ +.|.+ .+.+.......++.+++.++.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g 332 (496)
T PRK03893 253 VLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGG 332 (496)
T ss_pred HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00000011111112222222222222335567787775 66888 6777888888999999999999
Q ss_pred HhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHH
Q psy10222 1534 GLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGI 1613 (1693)
Q Consensus 1534 ~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~ 1613 (1693)
++.||+|||+.+..+..+..+..+.+ .... ...................+..+....+..|.+|++.|+++.++
T Consensus 333 ~l~dr~g~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 406 (496)
T PRK03893 333 FLGDWLGTRKAYVCSLLISQLLIIPV-----FAIG-GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGF 406 (496)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHH-----hhcc-ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccch
Confidence 99999999998877765555443322 1111 12222222222222233334455566778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH
Q psy10222 1614 STCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFG 1652 (1693)
Q Consensus 1614 ~~~~~~lg~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~ 1652 (1693)
.+....+|+.++|.+.+.+.+..|++..+...++...+.
T Consensus 407 ~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~ 445 (496)
T PRK03893 407 TYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFV 445 (496)
T ss_pred hhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999887776655544443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-25 Score=274.15 Aligned_cols=355 Identities=14% Similarity=0.107 Sum_probs=260.4
Q ss_pred hhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy10222 1249 AYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILA 1328 (1693)
Q Consensus 1249 ~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~~~~~lli 1328 (1693)
...++.+|.+++ |+++|.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++++++|++.+++
T Consensus 26 ~~~~~~lp~i~~---~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~ 102 (393)
T PRK09705 26 TSVGPLLPQLRQ---ASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLS 102 (393)
T ss_pred hccchhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHH
Confidence 567789999995 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc-----hhHHHHHHhHHHHHHHHHHhc
Q psy10222 1329 GRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL-----HWKTTSAVCALFPCASFIFAY 1403 (1693)
Q Consensus 1329 ~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l-----~WR~~f~i~~i~~~v~lv~~~ 1403 (1693)
+|+++|+|.|...+....++.|++| ++|+++++++..+..+|..+++.++.++ +||+.+.+.++..++.++..+
T Consensus 103 ~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~ 181 (393)
T PRK09705 103 SALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWW 181 (393)
T ss_pred HHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997 8899999999988888888888777664 799988776665544433332
Q ss_pred cc-cCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHH
Q psy10222 1404 FT-PESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAII 1482 (1693)
Q Consensus 1404 ~l-pEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1482 (1693)
+. ++.|+ . ++ ++ +...++.++++.. +..
T Consensus 182 ~~~~~~~~-----~----------------~~-------------~~-------------~~~~~~~l~~~~~----~~l 210 (393)
T PRK09705 182 WQSAREVA-----S----------------SH-------------KT-------------TTTPVRVVFTPRA----WTL 210 (393)
T ss_pred HHhcCCCc-----c----------------cc-------------CC-------------CcCCcccccCHhH----HHH
Confidence 22 11110 0 00 00 0001112222221 111
Q ss_pred HHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHH
Q psy10222 1483 LVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVAS 1561 (1693)
Q Consensus 1483 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~ 1561 (1693)
..... ....++.....+.|.++++.|.+ .+.+......+++.+++.++.+++.||++||+....+....+++...+ .
T Consensus 211 ~~~~~-~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~-~ 288 (393)
T PRK09705 211 GVYFG-LINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGF-I 288 (393)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH-H
Confidence 12222 22234556667788888878888 667788888899999999999999999999998888776666655433 1
Q ss_pred HHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccC-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cc
Q psy10222 1562 ILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELF-PQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIG-TP 1639 (1693)
Q Consensus 1562 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~-p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~g-~~ 1639 (1693)
.... . ... .. ..+ .+.......+.......+.+ |++.++++.++.+....+++.++|.+.+++.+..| +.
T Consensus 289 ---~~~~-~-~~~-~~-~~l-~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~ 360 (393)
T PRK09705 289 ---WLPL-Q-LPV-LW-AMV-CGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYL 360 (393)
T ss_pred ---Hccc-h-HHH-HH-HHH-HHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 1111 1 111 11 111 22222233344444445655 46789999999999999999999999999999887 66
Q ss_pred hhHHHHHHHHHHHHHHHhhhccCCCCCCH
Q psy10222 1640 ETFGLYGCITAFGFVFLYIFLPETKNKTL 1668 (1693)
Q Consensus 1640 ~~f~i~~~~~ll~~v~~~~~~~et~~~~~ 1668 (1693)
..+.+.++++++..+..+...|||++|.+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 361 MDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 67777777777777777778899887653
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=279.11 Aligned_cols=383 Identities=14% Similarity=0.112 Sum_probs=272.0
Q ss_pred hhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhh
Q psy10222 1242 LAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLAT 1321 (1693)
Q Consensus 1242 ~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~ 1321 (1693)
+...+|....+...|.+.+ +++.++.+.+++.+++.++..++.++.|+++||+|||+++..+.++..++.+++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 80 (399)
T TIGR00893 4 VINYLDRANLSFAAPMLQE---DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG 80 (399)
T ss_pred hHHHHHHHhhhHhHHHHHH---hhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc
Confidence 4567788888889999885 8899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHHHHH
Q psy10222 1322 EVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFPCA 1397 (1693)
Q Consensus 1322 ~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~~v 1397 (1693)
|++.++++|+++|++.+...+....++.|++|+++|+++.++.+....+|.++++.+++.+ +||+.|++.+++.++
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGII 160 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998875 899999999888777
Q ss_pred HHHHhcc-ccCChHHHHhcCCHHHHHHH-HHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCc
Q psy10222 1398 SFIFAYF-TPESPPWLASKGFTVQAQQA-FYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEF 1475 (1693)
Q Consensus 1398 ~lv~~~~-lpEsp~~l~~~~~~~~a~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1475 (1693)
..+...+ .||+|+.. +...++.++. .+..+ .+ ..+..+.+.++...++.++++..
T Consensus 161 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------------------~~---~~~~~~~~~~~~~~~~~~~~~~~ 217 (399)
T TIGR00893 161 WGVLWLKFIPDPPQKA--KWLTEEEKYIVVGGLL------------------AE---QQGKGPSTPKKYQIKELLKDRRV 217 (399)
T ss_pred HHHHhhheecCCCCcc--ccCCHHHHhhcchhhc------------------cc---cccccccCCCccchHHHhcCHHH
Confidence 6655544 67765310 0001110000 00000 00 00000011122233444544432
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHH-HHHHH
Q psy10222 1476 LKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALL-SCLGT 1552 (1693)
Q Consensus 1476 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~-~~~~~ 1552 (1693)
+ ..... .+...........+.|.+.++ .+.+ .+.+.......++.+++.++.+++.||++||+.... .....
T Consensus 218 ~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 292 (399)
T TIGR00893 218 W----GLALG-QFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTA 292 (399)
T ss_pred H----HHHHH-HHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Confidence 2 22222 222233445566677777655 4776 566777778888999999999999999999962111 11111
Q ss_pred HHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1553 CLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLL 1632 (1693)
Q Consensus 1553 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l 1632 (1693)
.+..+.. ..........+........ ........+..+..+.+.+|.+|++.|+++.++.+.+..+++.++|.+.+.+
T Consensus 293 ~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l 370 (399)
T TIGR00893 293 IIAGLVL-SLLMFATNYVNIPYAALAL-VALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAI 370 (399)
T ss_pred HHHHHHH-HHHHHHhccchhHHHHHHH-HHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhh
Confidence 1111111 1111111111122222222 2223333336778888999999999999999999999999999999999999
Q ss_pred HHhcC-cchhHHHHHHHHHHHHHHHh
Q psy10222 1633 FLSIG-TPETFGLYGCITAFGFVFLY 1657 (1693)
Q Consensus 1633 ~~~~g-~~~~f~i~~~~~ll~~v~~~ 1657 (1693)
.+..| ++..+.+.+++.+++.+..+
T Consensus 371 ~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 371 AATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred ccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 99888 88888888888777766554
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-25 Score=277.74 Aligned_cols=393 Identities=12% Similarity=0.029 Sum_probs=260.6
Q ss_pred hHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHH
Q psy10222 1229 DKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCI 1308 (1693)
Q Consensus 1229 ~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~ 1308 (1693)
++|.++....+.......+....+..+|.+.+ + +.++.+.++..+++.++.+++++++|+++||+|||++++.+.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~---~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~ 101 (452)
T PRK11273 26 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE---Q-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 101 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---c-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHH
Confidence 44555555556666666776667778888874 5 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh----hHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHH-HHHHHhhhhc-
Q psy10222 1309 PFIMGWVIISLAT----EVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGI-FTAHLLGTFL- 1382 (1693)
Q Consensus 1309 l~~i~~ll~~~a~----~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~-~lg~~lg~~l- 1382 (1693)
+++++.+.+++++ +++.+++.|+++|++.|...+.....+.|++|+++|++++++++.+..+|. +.+|+++..+
T Consensus 102 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 181 (452)
T PRK11273 102 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMA 181 (452)
T ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999998864 788999999999999999989888889999999999999999999999886 4556543222
Q ss_pred ---hhHHHHHHhHHHHHHHHH-HhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhh
Q psy10222 1383 ---HWKTTSAVCALFPCASFI-FAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMT 1458 (1693)
Q Consensus 1383 ---~WR~~f~i~~i~~~v~lv-~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1458 (1693)
+||+.|++.+++.++..+ ..+++||+|+....+ +.++.++ +..+ + .+.+ .+ .+
T Consensus 182 ~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~-------~~~~---~-------~~~~----~~-~~ 238 (452)
T PRK11273 182 WFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLP-PIEEYKN-------DYPD---D-------YNEK----HE-QE 238 (452)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC-Chhhhhh-------cccc---c-------cccc----cC-CC
Confidence 999999998887776544 445579887532111 0011000 0000 0 0000 00 00
Q ss_pred hhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc-CCC-chhHHHHHHHHHHHHHHHHHHHHhh
Q psy10222 1459 DKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEV-SPD-VNEYTATIVIDIVRVVMAFVTCGLL 1536 (1693)
Q Consensus 1459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~s-~~~~~~~~~~~i~~~ig~~~~g~l~ 1536 (1693)
...+.......++++..+ .......+ .....+....+.|.++++. |++ .+.+.......++.+++.++.|+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~----~~~l~~~~-~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~ 313 (452)
T PRK11273 239 LTAKQIFMQYVLPNKLLW----YIAIANVF-VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMS 313 (452)
T ss_pred ccHHHHHHHHHHcChHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000011233333222 22222222 2223455667888888764 777 5666667777888899999999999
Q ss_pred hhc--CChhHHHH-HHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHH
Q psy10222 1537 RIF--GRRPLALL-SCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGI 1613 (1693)
Q Consensus 1537 dr~--grr~~l~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~ 1613 (1693)
||+ +||..... ......++.+.+ ......+.+.... .....+....+.......+..|.+|++.|+++.|+
T Consensus 314 dr~~~~r~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 387 (452)
T PRK11273 314 DKVFRGNRGATGVFFMTLVTIATIVY-----WLNPAGNPTVDMA-CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGF 387 (452)
T ss_pred HHHccCCcchHHHHHHHHHHHHHHHH-----HHhcccChHHHHH-HHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHH
Confidence 999 45543222 112222222111 1111111122211 11111221112222233456799999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhh
Q psy10222 1614 STCFAFLTLFV-VVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIF 1659 (1693)
Q Consensus 1614 ~~~~~~lg~~i-~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~ 1659 (1693)
.+...++++.+ +|.+.+.+.+..|++..|++.+++++++.+....+
T Consensus 388 ~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 434 (452)
T PRK11273 388 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 434 (452)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999998765 79999999999999999999888888877766543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=279.38 Aligned_cols=388 Identities=13% Similarity=0.098 Sum_probs=272.8
Q ss_pred HHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHH
Q psy10222 1233 AAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIM 1312 (1693)
Q Consensus 1233 ~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i 1312 (1693)
.+..++++.++..+|.++.++++|.+.+ ++|.++++.+|+.+.+.++..++.++.|+++||+|||++++.+.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 79 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAG---DLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTL 79 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3456677888999999999999999995 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHH
Q psy10222 1313 GWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTS 1388 (1693)
Q Consensus 1313 ~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f 1388 (1693)
+++++++++|++.++++|+++|++.+...+...+++.|++|+++|+++.+++.....+|..++|.+++++ +||+.|
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f 159 (485)
T TIGR00711 80 GSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIF 159 (485)
T ss_pred HHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887 899999
Q ss_pred HHhHHHHHHHHHHhc-cccCChHHHHhcCCHHHHHHHH--------H-HH-hCCCCc--hHHHHH-HHHHHhhhhccccc
Q psy10222 1389 AVCALFPCASFIFAY-FTPESPPWLASKGFTVQAQQAF--------Y-WL-RGHTAE--SEFEFK-SMLNHAERSTITKS 1454 (1693)
Q Consensus 1389 ~i~~i~~~v~lv~~~-~lpEsp~~l~~~~~~~~a~~~l--------~-~~-~~~~~~--~~~~~~-~~~~~~~~~~~~~~ 1454 (1693)
++.+++.++..+... ++||+++- .+++.|.....+ . .. ++...+ ++.+.. ........- ....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 236 (485)
T TIGR00711 160 LINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAI-IAFV 236 (485)
T ss_pred hhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHH-HHHH
Confidence 999988877665544 36775431 112222211110 0 00 111100 010100 000000000 0000
Q ss_pred chhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc-CCC-chhHHHHHHHHHHHHHHHHHH
Q psy10222 1455 ENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEV-SPD-VNEYTATIVIDIVRVVMAFVT 1532 (1693)
Q Consensus 1455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~s-~~~~~~~~~~~i~~~ig~~~~ 1532 (1693)
.++..++++....+.++++.++...+..... ....+...++.|.++++. |.+ .+.+....+..++.+++.++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~ 311 (485)
T TIGR00711 237 VWELTDDNPLVDLRLFKYRNFTIGCVYMSLL-----GLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIA 311 (485)
T ss_pred HHHHcCCCCccCHHHHcCCChHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000011111223456666544432222222 223455667788888764 777 678888888899999999999
Q ss_pred HHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHH
Q psy10222 1533 CGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSG 1612 (1693)
Q Consensus 1533 g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g 1612 (1693)
+++.||++||+.+..+....+++...+ .. ......+.+..... ....+++.....+.......+..|++.++++.+
T Consensus 312 g~l~~r~~~~~~~~~g~~~~~~~~~~~-~~--~~~~~~~~~~~~~~-~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~ 387 (485)
T TIGR00711 312 GRMGDKIDPRKLVTIGLILYAVGFYWR-AF--TFTPDTPFLAIALP-QFIRGFGMGCFFMPLTTIALSGLPPHKIARGSS 387 (485)
T ss_pred HHHHhhcCcHHHHHHHHHHHHHHHHHH-hc--cCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHH
Confidence 999999999999888877777766555 10 11112222222222 222222222222333345567789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy10222 1613 ISTCFAFLTLFVVVKTGPLLFLS 1635 (1693)
Q Consensus 1613 ~~~~~~~lg~~i~~~~~~~l~~~ 1635 (1693)
+.+..+.+|+.+++.+.+.++++
T Consensus 388 ~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 388 LSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988875
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=269.72 Aligned_cols=378 Identities=19% Similarity=0.187 Sum_probs=269.9
Q ss_pred hHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHH
Q psy10222 1229 DKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCI 1308 (1693)
Q Consensus 1229 ~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~ 1308 (1693)
+++..+....+..+..+++....+...|.+.+ ++|.++.+.+++.+.+.++..++.++.|+++||+|||+++..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 90 (398)
T TIGR00895 14 YQWRAIILSFLIMLMDGYDLAAMGFAAPAISA---EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSIL 90 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Confidence 34555666666777888888888889999885 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hh
Q psy10222 1309 PFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HW 1384 (1693)
Q Consensus 1309 l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~W 1384 (1693)
+..++.++.++++|++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|..+++.+++.+ +|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 170 (398)
T TIGR00895 91 LFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW 170 (398)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776 89
Q ss_pred HHHHHHhHHHHHHHH-HHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhh
Q psy10222 1385 KTTSAVCALFPCASF-IFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKK 1463 (1693)
Q Consensus 1385 R~~f~i~~i~~~v~l-v~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1463 (1693)
|+.|++.++...+.. +...++||+|++..++ +.++..+..++......+.+++ . ..+.....+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------~---~~~~~~~~~~~ 236 (398)
T TIGR00895 171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS----------A---LPEQKATQGTK 236 (398)
T ss_pred eeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc----------c---ccccccccchh
Confidence 999999876555544 4445689998776544 3344333333222111100000 0 00000000111
Q ss_pred hhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCCh
Q psy10222 1464 LEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRR 1542 (1693)
Q Consensus 1464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr 1542 (1693)
....+.++++...++......... ...........+.|.+.++.+.+ .+.+.......++.+++.++.+++.||++||
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (398)
T TIGR00895 237 RSVFKALFQGKTARITVLLWLLYF-MLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR 315 (398)
T ss_pred hHHHHHHhcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 112222223222333333322222 23334556667778777777877 6677777888899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHH
Q psy10222 1543 PLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTL 1622 (1693)
Q Consensus 1543 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~ 1622 (1693)
+.. .+....++....+ .. ...+.+.... ..+..+.......+..+++..|.+|++.|+++.|+.+....++.
T Consensus 316 ~~~-~~~~~~~~~~~~~-~~-----~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 387 (398)
T TIGR00895 316 VTA-LLLLLGAVFAVLV-GS-----TLFSPTLLLL-LGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGA 387 (398)
T ss_pred HHH-HHHHHHHHHHHHH-HH-----HhhCHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 443 3333333333332 11 1112222222 33333344445556678889999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy10222 1623 FVVVKTGPLL 1632 (1693)
Q Consensus 1623 ~i~~~~~~~l 1632 (1693)
.++|.+.+.+
T Consensus 388 ~~g~~~~G~l 397 (398)
T TIGR00895 388 IIGPILAGYL 397 (398)
T ss_pred HHHHHhHHhc
Confidence 9999988764
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-27 Score=271.80 Aligned_cols=410 Identities=16% Similarity=0.149 Sum_probs=290.3
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhhhhhhhhcccccc-----cCC--C--------CcccccchhHHHHHHHHHHhhhhh
Q psy10222 469 LTGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQLE-----SAN--S--------TIPITPEDGSWIACVLSCILMDLY 533 (1693)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~--~--------~~~~~~~~g~~iG~~~~G~lsDr~ 533 (1693)
..+..++++.+..++.+..+.|+++....+.+.+.+. ..+ . .+......|.++|.+++|+++||+
T Consensus 32 ~~g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~ 111 (538)
T KOG0252|consen 32 SEGLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF 111 (538)
T ss_pred ccchhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445677888888999999999998887777655432 111 1 133455668999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcc-------hHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHH
Q psy10222 534 GRRFTNLILCVPFVLGWVIMSMAT-------EVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISS 606 (1693)
Q Consensus 534 GRk~~l~~~~~~~~i~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~l 606 (1693)
|||++....++++++++++++++. -..++...|++.|+|+|+.+|...+..+|.+-.+.||...+....++.+
T Consensus 112 GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~ 191 (538)
T KOG0252|consen 112 GRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGF 191 (538)
T ss_pred cchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecch
Confidence 999999999999999998776642 2567899999999999999999999999999999999998887777777
Q ss_pred HHHHHHHhhhhh-------------------hhHHHHHHhHHHHHHHHHHhhcccCChHHHHhc-CCHHHHHHHHHHHhC
Q psy10222 607 GIFISHLLGTFL-------------------HWKTASAVCALFPFISCIFVYSTPESPSWLASK-GYSVEAEQAFHWLRG 666 (1693)
Q Consensus 607 G~~~~~~~~~~~-------------------~wr~~~~~~~~~~~i~~~~~~~lpESp~~l~~~-gr~~~a~~~l~~l~~ 666 (1693)
|.+.+..++..+ -||..+.++++|+++.+..++.+|||+||-... ++.++|. ++..+
T Consensus 192 GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k 268 (538)
T KOG0252|consen 192 GILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKK 268 (538)
T ss_pred hHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hcccc
Confidence 777666554332 299999999999999999999999999996333 3333333 22211
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhccCcccHHHHHHHHHHHHHHHhhhhhhHHhcHHHHH-----
Q psy10222 667 HSAESESELKSMLNHAQKITITKTENMVDKKKKREWKKNILSPEFLKPFVILLVFFFVQQFSGVNTVAFYSVGIL----- 741 (1693)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~G~~~~~~Y~~~i~----- 741 (1693)
.... + +.++.+ . +......+.....+.+.+..+ +-++++..+..||..... +|...++
T Consensus 269 ~~~~---~---~~~~~~-~---~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDia------fy~~nL~~s~I~ 331 (538)
T KOG0252|consen 269 VLSV---D---IEAEST-A---ESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIA------FYGQNLFQSVIF 331 (538)
T ss_pred cccc---c---cchhhc-c---ccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhh------hhccccHHHHHH
Confidence 1111 0 000000 0 000011111112233444444 778888899999955543 4443332
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhheeccCCCccccccchhHHHHHhhhhhhccCcccchhH
Q psy10222 742 KNVSPDVNEYVATMAIDIVRVIISHMTASALCALFPLTSIIFVYFTPESPSWLASKGYTVQAEKAFHWLRGHSDEFDNEL 821 (1693)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1693)
+..|...+
T Consensus 332 ~~ig~~~~------------------------------------------------------------------------ 339 (538)
T KOG0252|consen 332 SAIGVIPS------------------------------------------------------------------------ 339 (538)
T ss_pred HhhccCCC------------------------------------------------------------------------
Confidence 22221100
Q ss_pred HHHHhhhhhhHHHhhhhhccCcccchhhhhccccchhccccccccchhhHhHHHHhhcccCcCCccchhHHHHHHHHHhh
Q psy10222 822 KSILDYANSAEKAFHWLRGHSDEFDNELKSIMDYAQNITITNSEDMNYKEKICEWKKNILSPEFLKPFVILLVFFFVQQF 901 (1693)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 901 (1693)
-| .+.+.
T Consensus 340 -------------------~~-------------------------~~~~~----------------------------- 346 (538)
T KOG0252|consen 340 -------------------AN-------------------------TYHEL----------------------------- 346 (538)
T ss_pred -------------------cc-------------------------hHHHH-----------------------------
Confidence 00 00000
Q ss_pred cccccccCCCceeeeeeehhhhccccccchhHHHHHHHHHHHHHHHHhhhHhhhccCcceeeecchhhhhhhhhhhhhcc
Q psy10222 902 SGASTQFSGASTVSFYSVAILQNVSADVNEYTATMAIDILRVIMSAVTCGLLRITGRRPIAILSSLGTAFSLLGLALMLK 981 (1693)
Q Consensus 902 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~l~~~~~~~~~~~~~~~~~~~ 981 (1693)
+ ..+....++..+..++++.++.+++|++|||++++-+.+++.+..+.++.-.+
T Consensus 347 --------------------~------~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~ 400 (538)
T KOG0252|consen 347 --------------------F------KVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYN 400 (538)
T ss_pred --------------------H------HHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcc
Confidence 0 01123345555556678889999999999999999999999998888764322
Q ss_pred CCCccCCcchhHHHHHHHHHHHhcCCcccccccccccceeeeccccceeeeeeeeecCccceeeccccccccccCCcchh
Q psy10222 982 YPQEELPSFIPVILLMSYIVFVSFGLQPLPWIMAGEHTELFFLHPSVIVKIFQVKYLGPLTIMSTVTCGLLRITGRRPIA 1061 (1693)
Q Consensus 982 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1061 (1693)
.
T Consensus 401 ~------------------------------------------------------------------------------- 401 (538)
T KOG0252|consen 401 Q------------------------------------------------------------------------------- 401 (538)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred hhhhhhhHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHhCcccccceecccccccceeheecccCCCcchhccccc
Q psy10222 1062 ILSTLGTAFSLLGLALMLKYPQEELPSFIPVILLMSYIVFVSFGVQPLPWIMAGEVRYFTTYYIIHNHLFPQVTREIGSG 1141 (1693)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~p~~~r~~~~~ 1141 (1693)
.+ ...-.++++.+..++.++|++....++.+| .||+++|++|.|
T Consensus 402 ----------------------~~-~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE-------------~FParvR~t~hG 445 (538)
T KOG0252|consen 402 ----------------------LE-NTIGFVVLYSLTFFFGNFGPNATTFIVPAE-------------IFPARVRSTCHG 445 (538)
T ss_pred ----------------------cc-ccCceeehHHHHHHHHhcCCCceeEEeehh-------------hchHHHhhhhhh
Confidence 00 111224566777788899999999999999 999999999999
Q ss_pred chhhhhhhhhhhhhhcccceee-----ecCCCccccccccchhhhhhC
Q psy10222 1142 ITTCFGFLALFCAVKTEPLLFR-----SIGTPGTFGLYGKSKTAIRQN 1184 (1693)
Q Consensus 1142 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~~~~~s~~~ 1184 (1693)
|+.+.++.++.+++..|..+.+ -+|...+|++++.....+...
T Consensus 446 IsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~ 493 (538)
T KOG0252|consen 446 ISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILF 493 (538)
T ss_pred HHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhe
Confidence 9999999999999999999999 789999999999998887776
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-24 Score=263.31 Aligned_cols=363 Identities=13% Similarity=0.107 Sum_probs=253.0
Q ss_pred HHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHH
Q psy10222 1230 KLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIP 1309 (1693)
Q Consensus 1230 ~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l 1309 (1693)
.|..+..+.++.+....+.....+.+|.+.+ |++.++++.++..+++.++..+++++.|+++||+|||++++.+.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~ 94 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQ---DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVL 94 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence 3344444444444444444455556777774 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhH
Q psy10222 1310 FIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWK 1385 (1693)
Q Consensus 1310 ~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR 1385 (1693)
.+++.+++++++|++.++++|+++|++.|...+...+++.|++|+++|+++.++...+.++|.+++|++++.+ +||
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~ 174 (394)
T PRK10213 95 LTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWR 174 (394)
T ss_pred HHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999877 999
Q ss_pred HHHHHhHHHHHHHHHHhc-cccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhh
Q psy10222 1386 TTSAVCALFPCASFIFAY-FTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKL 1464 (1693)
Q Consensus 1386 ~~f~i~~i~~~v~lv~~~-~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1464 (1693)
+.|++.+++.++..+... .+||+|+. . + . ...
T Consensus 175 ~~f~~~~~l~~~~~l~~~~~~p~~~~~----~--~--------------~---------------------------~~~ 207 (394)
T PRK10213 175 NVFNAAAVMGVLCIFWIIKSLPSLPGE----P--S--------------H---------------------------QKQ 207 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCcc----c--c--------------c---------------------------chh
Confidence 999998877766554433 36775420 0 0 0 000
Q ss_pred hhhHhhcccCchHHHHHHHHHHHHHHhhhhHH-HHHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCCh
Q psy10222 1465 EWKKNILCTEFLKPLAIILVFFFVQQFSGLNT-LIFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRR 1542 (1693)
Q Consensus 1465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr 1542 (1693)
..++.++++..+..... .+. .+.+... ..+..|.+.++.|.+ .+.+......+++.+++.++.+++.||.+|
T Consensus 208 ~~~~~l~~~~~~~~~~~----~~~-~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~- 281 (394)
T PRK10213 208 NTFRLLQRPGVMAGMIA----IFM-SFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK- 281 (394)
T ss_pred HHHHHhcCHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-
Confidence 11233444333222111 111 1112222 234457777777888 556777788888999999999999999644
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHH
Q psy10222 1543 PLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTL 1622 (1693)
Q Consensus 1543 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~ 1622 (1693)
+.+..+.....+..+.+ . .. ..+.+.......+ .+.......+....++.+..| +.++.+.+.......++.
T Consensus 282 ~~l~~~~~~~~~~~~~l-~--~~---~~~~~~~~~~~~l-~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~ 353 (394)
T PRK10213 282 LALAGAPLVLAVSALVL-T--LW---GSDKIVATGVAII-WGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLAN 353 (394)
T ss_pred hHHHHHHHHHHHHHHHH-H--HH---hhhHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHH
Confidence 44333333333322222 1 11 1122333322222 233333334444445666666 445677777778889999
Q ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHH
Q psy10222 1623 FVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFL 1656 (1693)
Q Consensus 1623 ~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~ 1656 (1693)
.+++.+.+.+++..|+...+...+.+.++..+..
T Consensus 354 ~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 387 (394)
T PRK10213 354 TCGAAIGGYALDNIGLTSPLMLSGTLMLLTALLV 387 (394)
T ss_pred HHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHH
Confidence 9999999999999998877777766665554443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.2e-25 Score=270.22 Aligned_cols=351 Identities=14% Similarity=0.082 Sum_probs=254.8
Q ss_pred hhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy10222 1248 GAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVIL 1327 (1693)
Q Consensus 1248 ~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~~~~~ll 1327 (1693)
....++..|.+.+ ++|+++.+.+++.+++.++..++++++|+++||+|||+++..+.++..++.+++++++|++.++
T Consensus 19 ~~~~~~~~~~~~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (377)
T TIGR00890 19 VYTWTLLAPPLGR---YFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALY 95 (377)
T ss_pred HhhhhhHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677888885 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHHHHHHHHHhc
Q psy10222 1328 AGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFPCASFIFAY 1403 (1693)
Q Consensus 1328 i~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~~v~lv~~~ 1403 (1693)
++|+++|++.|..++....++.|++| ++|+++.++...+.++|..+++.+...+ +||+.|++.+++.++..+..+
T Consensus 96 ~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 174 (377)
T TIGR00890 96 LTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGA 174 (377)
T ss_pred HHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888889999987 5799999999999999987755444433 899999999988877765554
Q ss_pred c-ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHH
Q psy10222 1404 F-TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAII 1482 (1693)
Q Consensus 1404 ~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1482 (1693)
+ ++|.|+. +.+ ++.+. ++++...++.++++..+....
T Consensus 175 ~~~~~~~~~---~~~-------------~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~-- 212 (377)
T TIGR00890 175 FLIGYPPGQ---LIK-------------TNIEV------------------------SVKDYTVWEMLRTPQFWVLYL-- 212 (377)
T ss_pred HheecCchh---ccc-------------cCccc------------------------chhhhhHHHHHcCccHHHHHH--
Confidence 4 5554320 000 00000 000112234444443322111
Q ss_pred HHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHH
Q psy10222 1483 LVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVAS 1561 (1693)
Q Consensus 1483 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~ 1561 (1693)
........ ......+.+.+.++.+.+ .+.+.......++.+++.++.+++.||++||+.+..+....+++.+.+ .
T Consensus 213 --~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~-~ 288 (377)
T TIGR00890 213 --SFFLNAVS-GLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAM-L 288 (377)
T ss_pred --HHHHHhHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH-H
Confidence 11111111 222333444455666766 456667777888999999999999999999999888777777666544 1
Q ss_pred HHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Q psy10222 1562 ILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPET 1641 (1693)
Q Consensus 1562 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~ 1641 (1693)
.. .....+.... .....+.......+....+..|.+|++.|+++.|+.+....+|..++|.+.+.+.+..|++..
T Consensus 289 ---~~-~~~~~~~~~~-~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 363 (377)
T TIGR00890 289 ---FI-PMLNDVLFLA-TVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYT 363 (377)
T ss_pred ---Hc-ccchhHHHHH-HHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhH
Confidence 11 1111111111 122222222233445556788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy10222 1642 FGLYGCITAFGF 1653 (1693)
Q Consensus 1642 f~i~~~~~ll~~ 1653 (1693)
+.+.+++.+++.
T Consensus 364 f~~~~~~~~~~~ 375 (377)
T TIGR00890 364 FIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHhc
Confidence 888887776653
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-24 Score=271.33 Aligned_cols=390 Identities=14% Similarity=0.092 Sum_probs=268.8
Q ss_pred HHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHH
Q psy10222 1234 AGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMG 1313 (1693)
Q Consensus 1234 ~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~ 1313 (1693)
+..++++.++..++.+..++.+|.+.+ ++|.++.+.+|+.+.+.++..++.+++|+++||+|||++++.+.+++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 88 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTALPSMAQ---SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG 88 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH---HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 344556678888999999999999985 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHH
Q psy10222 1314 WVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSA 1389 (1693)
Q Consensus 1314 ~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~ 1389 (1693)
.+++++++|++.++++|+++|++.|...+...+++.|++|+++|+++.++......+|..++|.+++.+ +||+.|+
T Consensus 89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~ 168 (471)
T PRK10504 89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFL 168 (471)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998877 8999999
Q ss_pred HhHHHHHHHHHHhcc-ccCChHHHHhcCCHHHHHHHHH--------H-HhCCCC--chHHHHHHHHHHhhhhcccccchh
Q psy10222 1390 VCALFPCASFIFAYF-TPESPPWLASKGFTVQAQQAFY--------W-LRGHTA--ESEFEFKSMLNHAERSTITKSENM 1457 (1693)
Q Consensus 1390 i~~i~~~v~lv~~~~-lpEsp~~l~~~~~~~~a~~~l~--------~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 1457 (1693)
+..+...+..+.... .|+.+. .+.|.|.+..... . ..+... ......................++
T Consensus 169 ~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (471)
T PRK10504 169 INIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHA 245 (471)
T ss_pred HHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 998887766555544 455431 1122222211110 0 011110 000000000000000000000000
Q ss_pred hhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHHh
Q psy10222 1458 TDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVMAFVTCGL 1535 (1693)
Q Consensus 1458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g~l 1535 (1693)
+..+++....+.++++.++.......+. ..+.....++.|++++. .|.+ ...+....+..++.+++.++.+++
T Consensus 246 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 320 (471)
T PRK10504 246 RNNNRALFSLKLFRTRTFSLGLAGSFAG-----RIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQV 320 (471)
T ss_pred hcCCCCccCHHHhcccchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001111122456666544322222211 12234556677888875 5777 667777788888888888999999
Q ss_pred hhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHH
Q psy10222 1536 LRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGIST 1615 (1693)
Q Consensus 1536 ~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~ 1615 (1693)
.||+|||+.+..+....++....+ .. .......+... ......+.......+....+..+..|++.++.+.++.+
T Consensus 321 ~~r~g~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 395 (471)
T PRK10504 321 VNRFGYRRVLVATTLGLALVSLLF-ML---VALLGWYYLLP-FVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLS 395 (471)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHH-Hh---ccccccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHH
Confidence 999999999988887777665554 11 11111122111 12222222222333445567778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcc
Q psy10222 1616 CFAFLTLFVVVKTGPLLFLSIGTP 1639 (1693)
Q Consensus 1616 ~~~~lg~~i~~~~~~~l~~~~g~~ 1639 (1693)
+...+|..+++.+.+.+++..|+.
T Consensus 396 ~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 396 MIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999998877653
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-24 Score=273.30 Aligned_cols=369 Identities=11% Similarity=0.021 Sum_probs=240.2
Q ss_pred HHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHH
Q psy10222 1236 GPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWV 1315 (1693)
Q Consensus 1236 ~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~l 1315 (1693)
......+...++.....+.+|.+.+ |++++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.+++.++.+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~l~~---~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~ 116 (476)
T PLN00028 40 LSWISFFTCFVSTFAAAPLLPIIRD---NLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVF 116 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 3334445555666667788888885 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHH----Hhhhh---------c
Q psy10222 1316 IISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAH----LLGTF---------L 1382 (1693)
Q Consensus 1316 l~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~----~lg~~---------l 1382 (1693)
++++++|++.++++|+++|++.+... ....++.|++|+++||+++++......+|..+++ .+... .
T Consensus 117 ~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 195 (476)
T PLN00028 117 CMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT 195 (476)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 99999999999999999999988754 4566889999999999999998766666655554 33221 2
Q ss_pred hhHHHHHHhHHHHHHHHHHhcccc-CChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhh
Q psy10222 1383 HWKTTSAVCALFPCASFIFAYFTP-ESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKK 1461 (1693)
Q Consensus 1383 ~WR~~f~i~~i~~~v~lv~~~~lp-Esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1461 (1693)
+||+.|++.+++.++..+..++++ +.|+ ++.++.. ++. +.+ +.+
T Consensus 196 gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~-------~~~--------------~~~---------~~~ 240 (476)
T PLN00028 196 AWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELK-------KSG--------------TMP---------KDS 240 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHH-------hcC--------------ccc---------ccc
Confidence 799999999998887766655544 3331 1100000 000 000 000
Q ss_pred hhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy10222 1462 KKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIF 1539 (1693)
Q Consensus 1462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~ 1539 (1693)
....+++.+++++.+ ........ .......+..+.|.++.+ .|.+ .+++.......++.+++.++.|+++||+
T Consensus 241 ~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~ 315 (476)
T PLN00028 241 FSKVLRYGVTNYRTW----ILALTYGY-SFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA 315 (476)
T ss_pred HHHHHHHHHcCchhH----HHHHHHHH-HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 111233444444322 12222221 222223345566666544 5888 6677788888999999999999999999
Q ss_pred CChh-------HHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHH
Q psy10222 1540 GRRP-------LALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSG 1612 (1693)
Q Consensus 1540 grr~-------~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g 1612 (1693)
+||+ .......+.++..+.+ ....+.+......+++ ........+..+.+..+..| +.++++.|
T Consensus 316 ~~r~~~~~r~~~~~~~~~l~~i~~~~~-------~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~-~~~g~~~g 386 (476)
T PLN00028 316 ARRFGMRGRLWALWIVQTLGGVFCIWL-------GRANSLGAAIVVMILF-SIFVQAACGATFGIVPFVSR-RSLGVISG 386 (476)
T ss_pred HHhcCcchhHHHHHHHHHHHHHHHHHh-------cccchHHHHHHHHHHH-HHHHHHhhhhhcccCcccCh-hhchhhhh
Confidence 8762 1122222222211111 1111222222222222 22222233445566677655 68899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhh
Q psy10222 1613 ISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYI 1658 (1693)
Q Consensus 1613 ~~~~~~~lg~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~ 1658 (1693)
+.+..+.+|+.+++.+.+ ..+..+|...|.+.+++.+++.++.++
T Consensus 387 ~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 387 LTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAF 431 (476)
T ss_pred hhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHh
Confidence 998887788877776543 112235778888888888777666543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-25 Score=274.52 Aligned_cols=374 Identities=14% Similarity=0.055 Sum_probs=274.3
Q ss_pred hhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHh--
Q psy10222 1242 LAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISL-- 1319 (1693)
Q Consensus 1242 ~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~-- 1319 (1693)
++..+......+.+|.+.+ +++.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+..+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~ 103 (417)
T PRK10489 27 FISIFGLGLLGVAVPVQIQ---MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNA 103 (417)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHH
Confidence 3445556677777888775 67778999999999999999999999999999999999999988888877666543
Q ss_pred ---hhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhH
Q psy10222 1320 ---ATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCA 1392 (1693)
Q Consensus 1320 ---a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~ 1392 (1693)
+++++.+++.|+++|++.+...+...+++.|+.|+++|+++.++......+|..+||.+++.+ +|||.|++.+
T Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~ 183 (417)
T PRK10489 104 FLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAA 183 (417)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHH
Confidence 568899999999999999988899999999999999999999999999999999999999876 8999999988
Q ss_pred HHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcc
Q psy10222 1393 LFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILC 1472 (1693)
Q Consensus 1393 i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1472 (1693)
+..++..+..+.+||+++.. ++ +++.. ++....++..+++
T Consensus 184 ~~~~~~~~~~~~l~~~~~~~--~~---------------~~~~~-----------------------~~~~~~~~~~~~~ 223 (417)
T PRK10489 184 AGTFITLLPLLRLPALPPPP--QP---------------REHPL-----------------------RSLLAGFRFLLAS 223 (417)
T ss_pred HHHHHHHHHHHhCCCCCCCC--cc---------------cccch-----------------------HHHHHHHHHHHcC
Confidence 87776666666678764310 00 00000 0001112233333
Q ss_pred cCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHH
Q psy10222 1473 TEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCL 1550 (1693)
Q Consensus 1473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~ 1550 (1693)
+..+...+.. .... . ......+.|.+.++ .|.+ ...+......+++.+++.++.+++.||.++++.+..+..
T Consensus 224 ~~~~~~~~~~-~~~~---~--~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~ 297 (417)
T PRK10489 224 PVVGGIALLG-GLLT---M--ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTL 297 (417)
T ss_pred hHHHHHHHHH-HHHH---H--HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHH
Confidence 3222211111 1111 1 23344566777776 5777 566677777888999999999999999877777777766
Q ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1551 GTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGP 1630 (1693)
Q Consensus 1551 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~ 1630 (1693)
+.+++.+.+ . ..+++.......+..+.+.....+...+++.|..|++.|+++.|+.+....+|..+++.+.+
T Consensus 298 ~~~~~~~~~-~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G 369 (417)
T PRK10489 298 GSFLAVGLF-G-------LMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLG 369 (417)
T ss_pred HHHHHHHHH-H-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHH
Confidence 665555443 1 11222222222222333333334555678889999999999999999999999999999999
Q ss_pred HHHHhcCcchhHHHHHHHHHHHHHHHhhhccCCCCCCHHHHH
Q psy10222 1631 LLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQIE 1672 (1693)
Q Consensus 1631 ~l~~~~g~~~~f~i~~~~~ll~~v~~~~~~~et~~~~~~~~~ 1672 (1693)
.+.+..|....+...+++.++.+++.+...+++|+++++|++
T Consensus 370 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (417)
T PRK10489 370 GLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPE 411 (417)
T ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 999999998888888888888777777788999988776654
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-24 Score=265.89 Aligned_cols=362 Identities=15% Similarity=0.119 Sum_probs=257.6
Q ss_pred HHHhHhhhhhhhhhhhhhhhh-hhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHH
Q psy10222 1237 PLTATLAAGSAGAYSAVLLPQ-LESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWV 1315 (1693)
Q Consensus 1237 ~~l~~~~~~~~~~~~~~~lp~-i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~l 1315 (1693)
..+..++...+.++..+.+|. +++ +++.|+.+.+++.+++.++..+++++.|+++||+|||++++.+.+++.++++
T Consensus 20 l~~~~~~~~~~~~~~~~~l~~~i~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~ 96 (399)
T PRK05122 20 IVMFTFISYLTIGLPLAVLPGYVHD---QLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGL 96 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHH
Confidence 344556677778888888887 453 7899999999999999999999999999999999999999999999988887
Q ss_pred HHHhhh--------hHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----h
Q psy10222 1316 IISLAT--------EVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----H 1383 (1693)
Q Consensus 1316 l~~~a~--------~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~ 1383 (1693)
.++++. +++.+++.|+++|++.+...+....++.|+.|+++|+++.++...+..+|.++|+.+++.+ +
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g 176 (399)
T PRK05122 97 LYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGG 176 (399)
T ss_pred HHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHccc
Confidence 776542 5778999999999999999999999999999999999999999999999999999988876 8
Q ss_pred hHHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhh
Q psy10222 1384 WKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKK 1463 (1693)
Q Consensus 1384 WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1463 (1693)
||+.+++..+..++.++.....||+++ ++ ++ +.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----------------~~-~~-------------------------- 209 (399)
T PRK05122 177 LAGLGLLIMLLALLGLLLARPRPAVPP----VK----------------GE-RL-------------------------- 209 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCC----CC----------------cc-ch--------------------------
Confidence 999998877765554433332343321 00 00 00
Q ss_pred hhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCChh
Q psy10222 1464 LEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRP 1543 (1693)
Q Consensus 1464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~ 1543 (1693)
+.++.+++ .++.... .... .........+.|.+.++.+.+ +.+.......++.+++.++.+++.||++||+
T Consensus 210 -~~~~~~~~--~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 280 (399)
T PRK05122 210 -PFRRVLGR--VWPYGMG-LALA----SIGFGTIATFITLYYAARGWD-GAALALTLFGVAFVGARLLFGNLINRLGGLR 280 (399)
T ss_pred -hHHHHHHH--HHHHHHH-HHHH----HHHHHHHHHHHHHHHHHcccc-cchHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 00000100 0111011 1111 112233445556666655554 3445555677788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHH
Q psy10222 1544 LALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLF 1623 (1693)
Q Consensus 1544 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~ 1623 (1693)
.+..+....+++.+.+ . . ..+.+... ...+..+++.....+.......|..|++.|+++.++.+....+|..
T Consensus 281 ~~~~~~~~~~~~~~~~-~---~---~~~~~~~~-~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 352 (399)
T PRK05122 281 VAIVSLLVEILGLLLL-W---L---APSPWMAL-IGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLG 352 (399)
T ss_pred HHHHHHHHHHHHHHHH-H---H---hccHHHHH-HHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 8887777666665444 1 1 11222222 2222333333334444445667888999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhccCCCCC
Q psy10222 1624 VVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNK 1666 (1693)
Q Consensus 1624 i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~~~et~~~ 1666 (1693)
+++.+.+.+.+..|++..+++.+++.+++.+..++ .+++++|
T Consensus 353 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 394 (399)
T PRK05122 353 ITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL-LYRRAPR 394 (399)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-hcccccc
Confidence 99999999999999999999888888877666553 4444433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-25 Score=282.15 Aligned_cols=400 Identities=20% Similarity=0.309 Sum_probs=283.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhcccccccCC---------------CCcccccchhHHHHHHHHHHhhhhhchhHH
Q psy10222 474 LFQLLAAAGPIFATLGSGMTSGFSAVLLPQLESAN---------------STIPITPEDGSWIACVLSCILMDLYGRRFT 538 (1693)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------~~~~~~~~~g~~iG~~~~G~lsDr~GRk~~ 538 (1693)
.++........+..+.++++.+..+...|.+.+.- .........|..+|++++|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 34455555666667777777777766655432211 011233445788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc------------chHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHH
Q psy10222 539 NLILCVPFVLGWVIMSMA------------TEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISS 606 (1693)
Q Consensus 539 l~~~~~~~~i~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~l 606 (1693)
++.+.++..++.+..+++ +.+..++++|++.|++.|+..+...++++|..|+++||.+.++.+....+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 999999998888777653 22567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhh------------hhhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCCCCHHH
Q psy10222 607 GIFISHLLGTF------------LHWKTASAVCALFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHSAESESE 674 (1693)
Q Consensus 607 G~~~~~~~~~~------------~~wr~~~~~~~~~~~i~~~~~~~lpESp~~l~~~gr~~~a~~~l~~l~~~~~~~~~~ 674 (1693)
|..+++.++.. .+||+++.+.+++.++..+..+++||||+|+..++|.||+++.++++.+.++ .+++
T Consensus 168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 246 (479)
T PRK10077 168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL-ATQA 246 (479)
T ss_pred HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh-HHHH
Confidence 99988766432 3799999999888888777788899999999999999999888887764321 1111
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhccCcccHHHHHHHHHHHHHHHhhhhhhHHhcHHHHHHhcCCCchhHHHH
Q psy10222 675 LKSMLNHAQKITITKTENMVDKKKKREWKKNILSPEFLKPFVILLVFFFVQQFSGVNTVAFYSVGILKNVSPDVNEYVAT 754 (1693)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~G~~~~~~Y~~~i~~~~~~~~~~~~~~ 754 (1693)
.++..+.. + ++ +...+..+ . .........+....++|+.|.+.+.||.|.++++.|.+.+
T Consensus 247 ~~~~~~~~---------~--~~--~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~----- 306 (479)
T PRK10077 247 LQEIKHSL---------D--HG--RKTGGKLL-M-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTD----- 306 (479)
T ss_pred HHHHHHHH---------H--Hh--hhhhhhhc-c-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCc-----
Confidence 11111000 0 00 00000111 0 1112223333445667788888888888888766554311
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhheeccCCCccccccchhHHHHHhhhhhhccCcccchhHHHHHhhhhhhHHH
Q psy10222 755 MAIDIVRVIISHMTASALCALFPLTSIIFVYFTPESPSWLASKGYTVQAEKAFHWLRGHSDEFDNELKSILDYANSAEKA 834 (1693)
Q Consensus 755 ~~~~~v~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1693)
T Consensus 307 -------------------------------------------------------------------------------- 306 (479)
T PRK10077 307 -------------------------------------------------------------------------------- 306 (479)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhccCcccchhhhhccccchhccccccccchhhHhHHHHhhcccCcCCccchhHHHHHHHHHhhcccccccCCCcee
Q psy10222 835 FHWLRGHSDEFDNELKSIMDYAQNITITNSEDMNYKEKICEWKKNILSPEFLKPFVILLVFFFVQQFSGASTQFSGASTV 914 (1693)
Q Consensus 835 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 914 (1693)
T Consensus 307 -------------------------------------------------------------------------------- 306 (479)
T PRK10077 307 -------------------------------------------------------------------------------- 306 (479)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeehhhhccccccchhHHHHHHHHHHHHHHHHhhhHhhhccCcceeeecchhhhhhhhhhhhhccCCCccCCcchhHH
Q psy10222 915 SFYSVAILQNVSADVNEYTATMAIDILRVIMSAVTCGLLRITGRRPIAILSSLGTAFSLLGLALMLKYPQEELPSFIPVI 994 (1693)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 994 (1693)
.........++..+++.++++.+.||+|||++++.+..++++++++++.....
T Consensus 307 ---------------~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~------------ 359 (479)
T PRK10077 307 ---------------IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT------------ 359 (479)
T ss_pred ---------------hHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc------------
Confidence 01122334566677788999999999999999999888888877766432110
Q ss_pred HHHHHHHHHhcCCcccccccccccceeeeccccceeeeeeeeecCccceeeccccccccccCCcchhhhhhhhhHHHHHH
Q psy10222 995 LLMSYIVFVSFGLQPLPWIMAGEHTELFFLHPSVIVKIFQVKYLGPLTIMSTVTCGLLRITGRRPIAILSTLGTAFSLLG 1074 (1693)
Q Consensus 995 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1074 (1693)
T Consensus 360 -------------------------------------------------------------------------------- 359 (479)
T PRK10077 360 -------------------------------------------------------------------------------- 359 (479)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCCCCCcchhHHHHHHHHHHHHhCcccccceecccccccceeheecccCCCcchhcccccchhhhhhhhhhhh
Q psy10222 1075 LALMLKYPQEELPSFIPVILLMSYIVFVSFGVQPLPWIMAGEVRYFTTYYIIHNHLFPQVTREIGSGITTCFGFLALFCA 1154 (1693)
Q Consensus 1075 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~ 1154 (1693)
+...+..+.++..+.+++..++.++.+.+.+| +||++.|++++|+..++.+++.++.
T Consensus 360 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-------------~~p~~~r~~~~g~~~~~~~~g~~~~ 416 (479)
T PRK10077 360 ----------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSE-------------IFPNAIRGKALAIAVAAQWIANYFV 416 (479)
T ss_pred ----------CcccHHHHHHHHHHHHHHhccccchhHHHhHh-------------hCChhHHHHHHHHHHHHHHHHHHHH
Confidence 00122334455666666666777888899999 9999999999999999999999999
Q ss_pred hhccccee------eecCCCccccccccchhhhhhC
Q psy10222 1155 VKTEPLLF------RSIGTPGTFGLYGKSKTAIRQN 1184 (1693)
Q Consensus 1155 ~~~~~~~~------~~~~~~~~~~~~a~~~~~s~~~ 1184 (1693)
...+|.+. +..|+..+|.++++........
T Consensus 417 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (479)
T PRK10077 417 SWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALF 452 (479)
T ss_pred HHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHH
Confidence 98888655 3678888898888776655443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.5e-24 Score=262.29 Aligned_cols=364 Identities=13% Similarity=0.105 Sum_probs=257.9
Q ss_pred HHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHH
Q psy10222 1234 AGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMG 1313 (1693)
Q Consensus 1234 ~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~ 1313 (1693)
+....+..+..+.......+.+|.+++ |+|.+..+.+++.+.+.++..++++++|+++||+|||+++..+.++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 81 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAH---DVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIG 81 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHH---HcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH
Confidence 344455667788888888899999985 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHH
Q psy10222 1314 WVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSA 1389 (1693)
Q Consensus 1314 ~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~ 1389 (1693)
.+++++++|++.+++.|+++|++.|...+...+++.|++|+++|++++++...+..+|..++|.+++.+ +||+.|+
T Consensus 82 ~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~ 161 (382)
T PRK10091 82 NAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFL 161 (382)
T ss_pred HHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999888776 8999999
Q ss_pred HhHHHHHHHHHHh-ccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhH
Q psy10222 1390 VCALFPCASFIFA-YFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKK 1468 (1693)
Q Consensus 1390 i~~i~~~v~lv~~-~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1468 (1693)
+.+++.++..+.. .++||.++ +.+ .+.+ ...+
T Consensus 162 ~~~~~~~~~~~~~~~~lp~~~~----~~~---------------~~~~----------------------------~~~~ 194 (382)
T PRK10091 162 LIAVFNIAVLASIYFWVPDIRD----EAK---------------GGLR----------------------------EQFH 194 (382)
T ss_pred HHHHHHHHHHHHHHHhCCCCCc----ccc---------------cCHH----------------------------HHHH
Confidence 9998877665443 34787641 000 0000 0011
Q ss_pred hhcccCchHHHHHHHHHHHHHHhhhhHHHHHh-HHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHH
Q psy10222 1469 NILCTEFLKPLAIILVFFFVQQFSGLNTLIFY-TVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLAL 1546 (1693)
Q Consensus 1469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~ 1546 (1693)
.++++..+ ........ ...+......+ .|.+.+..|.+ .+.+......+++.+++.++.+++.||+++|+.+.
T Consensus 195 ~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~ 269 (382)
T PRK10091 195 FLRSPAPW----LIFAATMF-GNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAA 269 (382)
T ss_pred HhcChHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHH
Confidence 12222111 11111111 11122222333 44444445777 66777778888999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHH
Q psy10222 1547 LSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVV 1626 (1693)
Q Consensus 1547 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~ 1626 (1693)
.+..+.+++.+.+ .. . . +..+.......+...+......+.......+..|.+.++.+ ..+....+|..++|
T Consensus 270 ~~~~~~~i~~~~~-~~---~-~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp 341 (382)
T PRK10091 270 VTDFIIVLALLML-FF---F-G-GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGA 341 (382)
T ss_pred HHHHHHHHHHHHH-HH---H-H-hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHH
Confidence 8777666655443 11 1 1 11222222222222221111222222334455555555544 44677889999999
Q ss_pred HHHHHHHHh-cCcchhHHHHHHHHHHHHHHHhhhc
Q psy10222 1627 KTGPLLFLS-IGTPETFGLYGCITAFGFVFLYIFL 1660 (1693)
Q Consensus 1627 ~~~~~l~~~-~g~~~~f~i~~~~~ll~~v~~~~~~ 1660 (1693)
.+.+.+.+. .+++..+.+.++++++.........
T Consensus 342 ~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (382)
T PRK10091 342 YCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYG 376 (382)
T ss_pred HHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 999999985 6788888887776666555444443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=272.64 Aligned_cols=400 Identities=13% Similarity=0.046 Sum_probs=270.1
Q ss_pred HHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHH
Q psy10222 1230 KLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIP 1309 (1693)
Q Consensus 1230 ~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l 1309 (1693)
++..+....+.......+........|.++ ++|.++++.+++.+++.++..+++++.|+++||+|||+++..+.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~ 100 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLV----EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHH----HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHH
Confidence 355555566666677777777777888887 3589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh----hhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc---
Q psy10222 1310 FIMGWVIISLA----TEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL--- 1382 (1693)
Q Consensus 1310 ~~i~~ll~~~a----~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l--- 1382 (1693)
..++.++.+++ ++++.+.+.|++.|++.|...+....++.|++|+++|++++++++.+..+|..+++.+.+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~ 180 (438)
T TIGR00712 101 SAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW 180 (438)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999888765 56788899999999999999999999999999999999999999999999999887665432
Q ss_pred --hhHHHHHHhHHHHHHHHHH-hccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhh
Q psy10222 1383 --HWKTTSAVCALFPCASFIF-AYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTD 1459 (1693)
Q Consensus 1383 --~WR~~f~i~~i~~~v~lv~-~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1459 (1693)
+||+.|++.+++.++..+. .+++||+|+....+ +.++ .+.+..+.. .++ .+. +.
T Consensus 181 ~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~----------~~~----~~~-~~ 237 (438)
T TIGR00712 181 FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLP-PIEE-------YRNDYPDDY----------NEK----AEQ-EL 237 (438)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCC-Cchh-------ccccccccc----------ccc----ccc-cc
Confidence 8999999999888776544 44578887532100 0000 000000000 000 000 00
Q ss_pred hhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc-CCC-chhHHHHHHHHHHHHHHHHHHHHhhh
Q psy10222 1460 KKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEV-SPD-VNEYTATIVIDIVRVVMAFVTCGLLR 1537 (1693)
Q Consensus 1460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~s-~~~~~~~~~~~i~~~ig~~~~g~l~d 1537 (1693)
+.+.......++++..+.... . ........+....+.|.++++. |.+ .+.+....+..+.++++.++.+++.|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~d 312 (438)
T TIGR00712 238 TAKEIFMQYVLPNKLLWYIAI----A-NVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD 312 (438)
T ss_pred chHHHHHHHHccCchHHHHHH----H-HHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000111122344443322211 1 1122233456667888888764 777 66777777888899999999999999
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHH
Q psy10222 1538 IFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCF 1617 (1693)
Q Consensus 1538 r~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~ 1617 (1693)
|+++++....+........... ..+ ......+.+.... ..+..+....+..........|.+|++.|+++.|+.+..
T Consensus 313 r~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 389 (438)
T TIGR00712 313 KVFKGNRGATGVFFMTLVTIAV-IVY-WMNPAGNPLVDMI-CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF 389 (438)
T ss_pred HhccCcccHHHHHHHHHHHHHH-HHH-HhcCCCchHHHHH-HHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchH
Confidence 9965432223322222221111 111 1111112222211 111111211121122223567999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhccCCC
Q psy10222 1618 AFLTL-FVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETK 1664 (1693)
Q Consensus 1618 ~~lg~-~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~~~et~ 1664 (1693)
+++++ .++|.+.+.+.+..|+...+.+.+++.+++.+..++..||.|
T Consensus 390 ~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 390 GYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 88875 689999999999999999999988888888888888888765
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-24 Score=263.10 Aligned_cols=366 Identities=11% Similarity=0.067 Sum_probs=267.9
Q ss_pred HHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHH
Q psy10222 1230 KLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIP 1309 (1693)
Q Consensus 1230 ~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l 1309 (1693)
|+..+..+.++.+..+.+....+..+|.+.+ ++|+|+++.+++.+.+.++..++++++|+++||+|||+++..+.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~---~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~ 81 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGPIAE---YFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFAL 81 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455556667788899999999999999986 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc-----hh
Q psy10222 1310 FIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL-----HW 1384 (1693)
Q Consensus 1310 ~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l-----~W 1384 (1693)
..++.+++++++|++.++++|+++|++.|...+....++.|++|+++|+++.+.......+|..++|.+.+.+ +|
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw 161 (394)
T PRK03699 82 MILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEW 161 (394)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 9999999999999999999999999999999999999999999999999999999888889888888776654 89
Q ss_pred HHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhh
Q psy10222 1385 KTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKL 1464 (1693)
Q Consensus 1385 R~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1464 (1693)
|+.|++.+++.++..+..++ .+.|+. .+.+ .+++ + ...+.
T Consensus 162 ~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~-------------~~~~--------------~----------~~~~~ 201 (394)
T PRK03699 162 YWVYACIGLVYVAIFILTLF-SEFPAL--GKHA-------------PKAD--------------K----------PVAKE 201 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCccc--cccC-------------cccc--------------C----------ccccc
Confidence 99999888877665544433 222210 0000 0000 0 00000
Q ss_pred hhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCCh
Q psy10222 1465 EWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRR 1542 (1693)
Q Consensus 1465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr 1542 (1693)
...++..... ...+......+.+..+.|.+.++ .|.+ .+.+.......++..++.++.+++.||++||
T Consensus 202 ---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~ 271 (394)
T PRK03699 202 ---------KWGIGVLFLA-IAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQ 271 (394)
T ss_pred ---------cCChHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 0011222222 22222333445667788888855 4887 5667777777888999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHH
Q psy10222 1543 PLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTL 1622 (1693)
Q Consensus 1543 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~ 1622 (1693)
+.+.......++....+ .. ... .+.. ....+..++...+..+....+..|..|. .++...+.......+|+
T Consensus 272 ~~l~~~~~~~~~~~~~~----~~--~~~-~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~ 342 (394)
T PRK03699 272 RILTVLAGLALVLMYLF----VN--TDD-PSHL-LYAILGLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGT 342 (394)
T ss_pred hHHHHHHHHHHHHHHHH----HH--cCC-chHH-HHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHH
Confidence 98877665554443332 11 111 1222 2222333333334455555566676664 45777888888999999
Q ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHh
Q psy10222 1623 FVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLY 1657 (1693)
Q Consensus 1623 ~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~ 1657 (1693)
.++|.+.+.+.+..|++..+++.+++.+++.+.+.
T Consensus 343 ~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (394)
T PRK03699 343 MLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCI 377 (394)
T ss_pred HHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999888888777766544
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=260.08 Aligned_cols=353 Identities=14% Similarity=0.072 Sum_probs=250.7
Q ss_pred hHhhhhhhhhhhhhhhhh-hhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy10222 1240 ATLAAGSAGAYSAVLLPQ-LESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIIS 1318 (1693)
Q Consensus 1240 ~~~~~~~~~~~~~~~lp~-i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~ 1318 (1693)
+.++.....++..+.+|. +++ |+|.|+.+.+++.+++.++..++++++|+++||+|||++++.+.+...++.+...
T Consensus 23 ~~~~~~~~~~~~~p~l~~~l~~---~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~ 99 (392)
T PRK12382 23 AVFLTYMTVGLPLPVIPLFVHH---DLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYL 99 (392)
T ss_pred HHHHHHHHHHHHhhhhhHHHHH---hcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 344555566777777875 453 7999999999999999999999999999999999999999999888777655332
Q ss_pred ---h-----hhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHH
Q psy10222 1319 ---L-----ATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKT 1386 (1693)
Q Consensus 1319 ---~-----a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~ 1386 (1693)
. .+|++.++++|+++|++.+...+...+++.|+.|+++|++++++.+.+...|.+++|++++.+ +||+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~ 179 (392)
T PRK12382 100 LAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAA 179 (392)
T ss_pred hhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHH
Confidence 2 368899999999999999999999999999999999999999999999999999999998876 8999
Q ss_pred HHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhh
Q psy10222 1387 TSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEW 1466 (1693)
Q Consensus 1387 ~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1466 (1693)
.+.+..+..++.+......||.++ ++ +.+ . +.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~----~~---------------~~~--~---------------------------~~ 211 (392)
T PRK12382 180 LALTTMVLPLLAWAFNGTVRKVPA----HA---------------GER--P---------------------------SL 211 (392)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCC----Cc---------------ccC--c---------------------------hH
Confidence 887766554443332222344321 00 000 0 00
Q ss_pred hHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHH
Q psy10222 1467 KKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLAL 1546 (1693)
Q Consensus 1467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~ 1546 (1693)
++.++ ..++....... ...+......+.|.++++.+.+ +.+......+++.+++.++.+++.||+|+|+.+.
T Consensus 212 ~~~~~--~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~ 283 (392)
T PRK12382 212 WSVVG--LIWKPGLGLAL-----QGVGFAVIGTFVSLYFASKGWA-MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAI 283 (392)
T ss_pred HHHHH--HHHHhHHHHHH-----HHHHHhHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehH
Confidence 00000 00111111111 1112334455666666666655 3445555667778889999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHH
Q psy10222 1547 LSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVV 1626 (1693)
Q Consensus 1547 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~ 1626 (1693)
.+....+++.+.+ . . ..+.+.......+ .+.......+.......|.+|++.|+++.|+.+....++..++|
T Consensus 284 ~~~~~~~~~~~~~-~---~---~~~~~~~~~~~~l-~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~ 355 (392)
T PRK12382 284 VSLLVETVGLLLL-W---L---APTAWVALAGAAL-TGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSG 355 (392)
T ss_pred HHHHHHHHHHHHH-H---H---cccHHHHHHHHHH-HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777766665444 1 1 1122222222222 22222233455556677889999999999999999999999999
Q ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhh
Q psy10222 1627 KTGPLLFLSIGTPETFGLYGCITAFGFVFLYIF 1659 (1693)
Q Consensus 1627 ~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~ 1659 (1693)
.+.+.+.+..|++..+.+.+++.+++.++.+..
T Consensus 356 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 356 PLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998888877766544
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=271.99 Aligned_cols=398 Identities=13% Similarity=0.071 Sum_probs=272.2
Q ss_pred hhhHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCC-------------------CCccCCcchhHHHHHHhHHHHHHHH
Q psy10222 1227 RCDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESAN-------------------STIPITPEDGTWIASMASLPTFIAC 1287 (1693)
Q Consensus 1227 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~-------------------~~~~is~~~~~~l~s~~~lg~~ig~ 1287 (1693)
.+.++.+...+.++..+...|....+.+.|.+++.. .|++.++.+.+++.+.+.+++.+++
T Consensus 14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~ 93 (465)
T TIGR00894 14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQ 93 (465)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHH
Confidence 445677777778888888999999998888776411 1688999999999999999999999
Q ss_pred HHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHH
Q psy10222 1288 ILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLA--TEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLC 1365 (1693)
Q Consensus 1288 l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a--~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~ 1365 (1693)
++.|+++||+|||+++..+.+++.++++++.++ .+++.+++.|+++|++.|...+....++.|++|+++|+++.++..
T Consensus 94 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 173 (465)
T TIGR00894 94 IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST 173 (465)
T ss_pred cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999888654 568899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhc-----hhHHHHHHhHHHHHHHHHHhcc-ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHH
Q psy10222 1366 TAVAIGIFTAHLLGTFL-----HWKTTSAVCALFPCASFIFAYF-TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEF 1439 (1693)
Q Consensus 1366 ~~~~lG~~lg~~lg~~l-----~WR~~f~i~~i~~~v~lv~~~~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~ 1439 (1693)
.+..+|.++++++++.+ +||+.|++.++++++..+..++ .+|+|+.. .+. ++++.
T Consensus 174 ~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~---~~~----------------~~~~~ 234 (465)
T TIGR00894 174 SGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH---PCI----------------SKFEK 234 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC---CCC----------------CHHHH
Confidence 99999999999887765 7999999999988877666555 56777421 100 00111
Q ss_pred HHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHH
Q psy10222 1440 KSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTA 1517 (1693)
Q Consensus 1440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~ 1517 (1693)
+.+.+..+++ . +..+.+.++++.++++.. .......+....+.+.+..|.|.++++ .|.+ .+.+..
T Consensus 235 ~~i~~~~~~~------~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~ 302 (465)
T TIGR00894 235 KYINSSLQGQ------K-GSTRQSLPIKAIPKSLPV-----WAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLL 302 (465)
T ss_pred HHHHhhcccc------c-CCCCCCCCHHHHhcCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHH
Confidence 1111000000 0 001112235555555432 222233333444566777888888765 4777 677777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCChhHHH---HHHHHHHHHHHHHH-HHHHHhhccCchHHHHHHHHHHHHHHHhhcccc
Q psy10222 1518 TIVIDIVRVVMAFVTCGLLRIFGRRPLAL---LSCLGTCLSLLGVA-SILKFMQGLLPSFMPVILLMFYMVFVSIGLQQL 1593 (1693)
Q Consensus 1518 ~~~~~i~~~ig~~~~g~l~dr~grr~~l~---~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 1593 (1693)
.....++..++.++.|+++||+++|+... .......++..... ..+.......+.+..+....+ .........+.
T Consensus 303 ~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~ 381 (465)
T TIGR00894 303 SSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTL-ANAVSSGPLAG 381 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHhhhhhhh
Confidence 77888999999999999999986542210 00011111110000 011111111222222222222 22222222333
Q ss_pred chhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHHHHHh
Q psy10222 1594 PWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSI---GTPETFGLYGCITAFGFVFLY 1657 (1693)
Q Consensus 1594 ~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~---g~~~~f~i~~~~~ll~~v~~~ 1657 (1693)
.+....|..| +.++.+.++.+..+.+++.++|.+.+.+.+.. +|...|.+.+++.+++.++..
T Consensus 382 ~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 382 VLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred hhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 4445557666 48999999999999999999999999877643 266778888877777766554
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=273.82 Aligned_cols=389 Identities=15% Similarity=0.130 Sum_probs=258.3
Q ss_pred HHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHH
Q psy10222 1230 KLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIP 1309 (1693)
Q Consensus 1230 ~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l 1309 (1693)
+|.++..+.+.......+....+..+|.+.+ +++.+.++.+++.+.+.++..++.+++|+++||+|||++++.+.++
T Consensus 17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 93 (455)
T TIGR00892 17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQ---IFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLL 93 (455)
T ss_pred chHHHHHHHHHHHHHHhhhcchhhhHHHHHH---HhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHH
Confidence 4555555544444433444456677888885 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHH-HHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hh
Q psy10222 1310 FIMGWVIISLATEVWVILA-GRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HW 1384 (1693)
Q Consensus 1310 ~~i~~ll~~~a~~~~~lli-~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~W 1384 (1693)
..++++++++++|++.+.+ .|+++|++.|...+....++.|++| ++|+++.++.+.+..+|..++|++++.+ ||
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gw 172 (455)
T TIGR00892 94 ASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGW 172 (455)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999998865 5799999999877788888999996 7899999999999999999999988876 89
Q ss_pred HHHHHHhHHHHHHHHHHhccc-cCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhh
Q psy10222 1385 KTTSAVCALFPCASFIFAYFT-PESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKK 1463 (1693)
Q Consensus 1385 R~~f~i~~i~~~v~lv~~~~l-pEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1463 (1693)
|+.|++.+++.++..+..+++ |+.+.. .+.+.++ . +....++ ..++ .+ . +...++..+
T Consensus 173 r~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~-~---~~~~~~~-~~~~----------~~---~-~~~~~~~~~ 231 (455)
T TIGR00892 173 RGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSKSKS-K---EGLPPDG-STKK----------LS---K-KSTAEKINR 231 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccc--ccccccc-c---ccCCCCC-cccc----------cc---c-cchhhhhhh
Confidence 999999998877665544443 332210 0000000 0 0000000 0000 00 0 000000001
Q ss_pred hhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhc--C
Q psy10222 1464 LEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIF--G 1540 (1693)
Q Consensus 1464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~--g 1540 (1693)
....+.++++.++.... ..+ ....+.+....+.|.+.++.|.+ .+.+......+++.+++.++.+++.||. +
T Consensus 232 ~~~~~~~~~~~~~~~~~----~~~-l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~ 306 (455)
T TIGR00892 232 FLDFSLFTHRGFLVYLS----GNV-IMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIR 306 (455)
T ss_pred hcchHHhcCchHHHHHH----HHH-HHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 11123455544332211 111 12223344455667777777887 6677777778888899999999999974 3
Q ss_pred ChhHHHHHH--HHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHH
Q psy10222 1541 RRPLALLSC--LGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFA 1618 (1693)
Q Consensus 1541 rr~~l~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~ 1618 (1693)
+|+....+. ...++..+.+ .. ..+.+. ..+..+..++......+.......|.+|++.++++.|+.+...
T Consensus 307 ~~~~~~~~~~~~~~~l~~ll~----~~---~~~~~~-~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 378 (455)
T TIGR00892 307 PHVQYLFSFALLFNGLTHLLC----AL---AGDYTG-LVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVE 378 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HH---hchHHH-HHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHH
Confidence 333333322 2222222111 11 112222 2233333333444445566777889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHHH
Q psy10222 1619 FLTLFVVVKTGPLLFLSI-GTPETFGLYGCITAFGFVFL 1656 (1693)
Q Consensus 1619 ~lg~~i~~~~~~~l~~~~-g~~~~f~i~~~~~ll~~v~~ 1656 (1693)
.+|+.++|.+.+.+.+.. +++..|.+.+++.+++.+..
T Consensus 379 ~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~ 417 (455)
T TIGR00892 379 CCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFL 417 (455)
T ss_pred HHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHH
Confidence 999999999999998877 48888888887777665543
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-23 Score=257.33 Aligned_cols=373 Identities=14% Similarity=0.022 Sum_probs=263.9
Q ss_pred hhhHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHH
Q psy10222 1227 RCDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVL 1306 (1693)
Q Consensus 1227 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~ 1306 (1693)
+.+++.....+.+..+...++.....+.+|.+.+ +++.++.+.++..+.+.++..+++++.|+++||+|||++++.+
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 84 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVE---DFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAG 84 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 3456667777778888888888988899999885 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----
Q psy10222 1307 CIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL---- 1382 (1693)
Q Consensus 1307 ~~l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l---- 1382 (1693)
..+..++.+.+++++|++.+++.|+++|++.+...+....++.|.+|+++|++..++......+|..++|.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~ 164 (406)
T PRK15402 85 VAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL 164 (406)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999999999999888888999999888776
Q ss_pred hhHHHHHHhHHHHHHHHHHhc-cccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhh
Q psy10222 1383 HWKTTSAVCALFPCASFIFAY-FTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKK 1461 (1693)
Q Consensus 1383 ~WR~~f~i~~i~~~v~lv~~~-~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1461 (1693)
+||+.|++.++..++..+... .+||+++.. ++ +... ++
T Consensus 165 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---------------~~~~-----------------------~~ 203 (406)
T PRK15402 165 PWRGMFVLFAALAALSFFGLWRAMPETAGRV---GE---------------KLSL-----------------------KE 203 (406)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCCCCccc---cc---------------cccH-----------------------HH
Confidence 899999998888777665443 467764210 00 0000 00
Q ss_pred hhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy10222 1462 KKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIF 1539 (1693)
Q Consensus 1462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~ 1539 (1693)
.....+..++++..+....... +.. ........+.|.++++ .+.+ .+.+.......++.+++.++.+++.||+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~ 278 (406)
T PRK15402 204 LGRDYKLVLKNRRFVAGALALG----LVS-LPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR 278 (406)
T ss_pred HHHHHHHHHcCcHHHHHHHHHH----HHH-HHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0112234455543332211111 111 1123334456666544 5777 4555666666778889999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHH
Q psy10222 1540 GRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAF 1619 (1693)
Q Consensus 1540 grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~ 1619 (1693)
++|+....+....+++.+.+ ...... ...+.++ ........+.......+......... +++.|++..++.+..+.
T Consensus 279 ~~~~~~~~~~~~~~~g~~~~-~~~~~~-~~~~~~~-~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~ 354 (406)
T PRK15402 279 PLRSLIRMGLWPMVAGLLLA-ALATVI-SSHAYLW-LTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSM 354 (406)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHc-ccccHHH-HHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHH
Confidence 99998888877666665554 222111 1112222 22222222222222233333333333 34789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH
Q psy10222 1620 LTLFVVVKTGPLLFLSIGTPETFGLYGCITAFG 1652 (1693)
Q Consensus 1620 lg~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~ 1652 (1693)
++..+++.+.+.+++..+.....+...+..++.
T Consensus 355 ~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 355 LIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 999999999999888777544333333333333
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-24 Score=267.11 Aligned_cols=323 Identities=12% Similarity=0.086 Sum_probs=239.5
Q ss_pred hhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q psy10222 307 VLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCVGRFL 386 (1693)
Q Consensus 307 ~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~~R~l 386 (1693)
.++|.+.++ +|.++++.+|..+.+.+++++++++.|++.||+||||++..++++++++++++++++|++++++.|++
T Consensus 30 ~~~~~l~~~---~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ 106 (390)
T PRK03545 30 GLLSDIAQS---FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIG 106 (390)
T ss_pred cchHHHHhH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 456788777 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecCC-------------Ccc
Q psy10222 387 TGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVGP-------------LPQ 453 (1693)
Q Consensus 387 ~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~~-------------~p~ 453 (1693)
+|++.+..+|...+++.|++|++||++++|++..+..+|.+++|++++.+.+++|||++|++.. .|+
T Consensus 107 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 186 (390)
T PRK03545 107 IAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPL 186 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999999999988751 111
Q ss_pred cccccccCcccccccc-cchhhHHHH-HHHHHHHHHHhhhhhhhhhhhccccc-ccCCCC---cccccchhHHHHHHHHH
Q psy10222 454 RSYLHLGNRLFSFSYL-TGYCLFQLL-AAAGPIFATLGSGMTSGFSAVLLPQL-ESANST---IPITPEDGSWIACVLSC 527 (1693)
Q Consensus 454 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~---~~~~~~~g~~iG~~~~G 527 (1693)
.+ +++..+.+.. ...+.+... ......+..........+..+++.+. +.+... +......+.++|+++.|
T Consensus 187 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g 262 (390)
T PRK03545 187 LP----SEHSGSLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFS 262 (390)
T ss_pred CC----CCCcchHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0000000000 011111111 11111111111221222333333221 111111 12233457788999999
Q ss_pred HhhhhhchhHHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHH
Q psy10222 528 ILMDLYGRRFTNLILCVPFVLGW-VIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISS 606 (1693)
Q Consensus 528 ~lsDr~GRk~~l~~~~~~~~i~~-~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~l 606 (1693)
+++||+|||..... ..+..++. .+....++.+.+++..++.|++.+...+....++.|..| +.||++.++.+....+
T Consensus 263 ~l~dr~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~ 340 (390)
T PRK03545 263 RLGNRHPSGFLLIA-IALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNI 340 (390)
T ss_pred HHhhccchhHHHHH-HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHH
Confidence 99999999875443 33333333 333456677888888999999988888888889999876 6889999999888888
Q ss_pred HHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHh
Q psy10222 607 GIFISHLLGTFL----HWKTASAVCALFPFISCIFV 638 (1693)
Q Consensus 607 G~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~ 638 (1693)
|..+++.+++.+ +++..+.+.++..+++++..
T Consensus 341 g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~ 376 (390)
T PRK03545 341 GIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWS 376 (390)
T ss_pred HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence 888888877665 78998988888777766654
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.9e-23 Score=249.08 Aligned_cols=370 Identities=12% Similarity=0.086 Sum_probs=259.7
Q ss_pred HHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHH
Q psy10222 1232 IAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFI 1311 (1693)
Q Consensus 1232 ~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~ 1311 (1693)
..+....++.++........++..+.+.+ .|+++|++|.+++.+++.++++++.++.|++.||+|.|+++..+.++..
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~--~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNK--IGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 35555556667777788888888888875 3799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh-----hhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHH----HHHHhhh--
Q psy10222 1312 MGWVIISLA-----TEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIF----TAHLLGT-- 1380 (1693)
Q Consensus 1312 i~~ll~~~a-----~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~----lg~~lg~-- 1380 (1693)
+.+++.+++ +|++.+++.|++.|++ |+.++.....+++++|+++||+++++.....++|.. ++|.+..
T Consensus 112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~ 190 (462)
T PRK15034 112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVP 190 (462)
T ss_pred HHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999987 8999999999999998 778999999999999999999999999655555554 4444321
Q ss_pred ----------------hchhHHHHHHhHHHHHHHHHHhcc-ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHH
Q psy10222 1381 ----------------FLHWKTTSAVCALFPCASFIFAYF-TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSML 1443 (1693)
Q Consensus 1381 ----------------~l~WR~~f~i~~i~~~v~lv~~~~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 1443 (1693)
..+||...++-.++.++..++.++ +++.|. .
T Consensus 191 l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~----------------------------- 238 (462)
T PRK15034 191 VFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---S----------------------------- 238 (462)
T ss_pred HHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---c-----------------------------
Confidence 124888888888877766655555 444321 0
Q ss_pred HHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHH
Q psy10222 1444 NHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVID 1522 (1693)
Q Consensus 1444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~ 1522 (1693)
+.+....++.+|+++.+. ... ..+..++++..+.++.|++.++ .++ ...........
T Consensus 239 ----------------~~~~~~~~~vlk~~~~Wl----lsl-ly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~ 296 (462)
T PRK15034 239 ----------------RASIADQLPVLQRLHLWL----LSL-LYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGP 296 (462)
T ss_pred ----------------ccCHHHHHHHhCCCchhH----HHH-HHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHH
Confidence 001122344566654332 222 2234555666677788888766 333 22233344456
Q ss_pred HHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccC
Q psy10222 1523 IVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELF 1602 (1693)
Q Consensus 1523 i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~ 1602 (1693)
+...+..+++|+++||+|+|+.+.++.+.+.+....+ ..........+-+......+......+.+.+ ..+-++.+.+
T Consensus 297 l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~-~l~lp~~~~~~~~~~~~~~~~l~~~~G~gng-svfk~ip~~f 374 (462)
T PRK15034 297 FIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALL-FLTLPGTGSGNFIAFYAVFMGLFLTAGLGSG-STFQMIAVIF 374 (462)
T ss_pred HHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHH-HHHhccccccHHHHHHHHHHHHHHHhcccch-HHHHhhHHHH
Confidence 6777888999999999999999998888777766443 1111111111112111111111122222222 3344566666
Q ss_pred cc---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHHHhhhc
Q psy10222 1603 PQ---------------------ATRELGSGISTCFAFLTLFVVVKTGPLLFLSIG-TPETFGLYGCITAFGFVFLYIFL 1660 (1693)
Q Consensus 1603 p~---------------------~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~g-~~~~f~i~~~~~ll~~v~~~~~~ 1660 (1693)
|. +..|.+.|+..+.+.+|+++.|.+++...+..| +...|+.+.+..+++.++++.+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 375 RQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred hhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 63 146788999999999999999999998888765 56678888888888888887653
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-24 Score=268.19 Aligned_cols=336 Identities=16% Similarity=0.159 Sum_probs=246.3
Q ss_pred hhhhhhHhhhhHH-hhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcc--
Q psy10222 299 GTAVGFSAVLLPQ-LQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSAT-- 375 (1693)
Q Consensus 299 ~l~~~~~~~~~P~-l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~-- 375 (1693)
.+........+|. +.++ +|.++.+.+++.+.+.+++++++++.|++.||+||||++..+.+++++++++++++.
T Consensus 28 ~~~~~~~~~~l~~~i~~~---~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~ 104 (399)
T PRK05122 28 YLTIGLPLAVLPGYVHDQ---LGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLL 104 (399)
T ss_pred HHHHHHHHHHHHHHHHHh---cCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhh
Confidence 3333333444554 3444 899999999999999999999999999999999999999999999998888776542
Q ss_pred ------hhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC
Q psy10222 376 ------KVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG 449 (1693)
Q Consensus 376 ------s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~ 449 (1693)
+++++++.|+++|+|.+...+...+++.|++|+|+|++++|+.+.+..+|.++||++++++.+++|||..|++.
T Consensus 105 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 184 (399)
T PRK05122 105 AAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI 184 (399)
T ss_pred hccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred ------------CCcccccccccCcccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhhcccccccCCCC-cccccc
Q psy10222 450 ------------PLPQRSYLHLGNRLFSFSYLTGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQLESANST-IPITPE 516 (1693)
Q Consensus 450 ------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~ 516 (1693)
..|+.+. .+.++ .......+. .+.......+..+..+....+...+..+...+... ......
T Consensus 185 ~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (399)
T PRK05122 185 MLLALLGLLLARPRPAVPP--VKGER--LPFRRVLGR-VWPYGMGLALASIGFGTIATFITLYYAARGWDGAALALTLFG 259 (399)
T ss_pred HHHHHHHHHHHhcCCCCCC--CCccc--hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHH
Confidence 1111110 00000 000000010 01111111111222222222222222221111111 112234
Q ss_pred hhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHH
Q psy10222 517 DGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAI 596 (1693)
Q Consensus 517 ~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~ 596 (1693)
.+.++|.++.|++.||+|||+.+..+..+..++.++..+.++.+.+++..++.|++.+...+.......|..|+++||++
T Consensus 260 ~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~ 339 (399)
T PRK05122 260 VAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAA 339 (399)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 56678899999999999999998888888888877777778888888899999999998888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHhhccc
Q psy10222 597 LAIVSLAISSGIFISHLLGTFL----HWKTASAVCALFPFISCIFVYSTP 642 (1693)
Q Consensus 597 ~~~~~~~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~~~lp 642 (1693)
.++++....+|..+++.+.+.+ +|+..+.+.++..++.++..++++
T Consensus 340 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (399)
T PRK05122 340 LGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLY 389 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999888777665544 789998888877777766655443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=252.65 Aligned_cols=368 Identities=13% Similarity=0.068 Sum_probs=252.2
Q ss_pred HHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHH
Q psy10222 1233 AAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIM 1312 (1693)
Q Consensus 1233 ~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i 1312 (1693)
......+..++...+.....+.+|.+.+ +++.+..+.++..++|.++.+++++++|+++||+|||++++.+.+++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~p~l~~i~~---~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~ 93 (413)
T PRK15403 17 FPMALILYDFAAYLTTDLIQPGIINVVR---DFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTL 93 (413)
T ss_pred HHHHHHHHHHHHHHHHHhhccCHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHH
Confidence 3334466677788899999999999985 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHH
Q psy10222 1313 GWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTS 1388 (1693)
Q Consensus 1313 ~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f 1388 (1693)
+++++++++|++.++++|+++|++.+...+...+++.|++|+++|+++++++.....+|..+||++++.+ +||+.|
T Consensus 94 ~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f 173 (413)
T PRK15403 94 ACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLF 173 (413)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999999999999999999887788888999999999999999999999999999999999876 899999
Q ss_pred HHhHHHHHHHHHHh-ccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhh
Q psy10222 1389 AVCALFPCASFIFA-YFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWK 1467 (1693)
Q Consensus 1389 ~i~~i~~~v~lv~~-~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1467 (1693)
++.++..++.++.. +++||+++. +++ +.+ . ......++
T Consensus 174 ~~~~~~~~i~~~~~~~~lp~~~~~---~~~--------------~~~-~-----------------------~~~~~~~~ 212 (413)
T PRK15403 174 AIIAVMGLIAFVGLLLAMPETVKR---GAV--------------PFS-A-----------------------KSVLRDFR 212 (413)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccc---cCC--------------CCC-h-----------------------HHHHHHHH
Confidence 99998888776554 448887520 000 000 0 00112334
Q ss_pred HhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc-CCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHH
Q psy10222 1468 KNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEV-SPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLA 1545 (1693)
Q Consensus 1468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l 1545 (1693)
+.++++.++...+. .............+.|.+.++. |.+ .+.+....+...+.+++..+.+++.++..+++..
T Consensus 213 ~ll~~~~~~~~~l~-----~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 287 (413)
T PRK15403 213 NVFRNRLFLTGAAT-----LSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFI 287 (413)
T ss_pred HHHcCHHHHHHHHH-----HHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHH
Confidence 55555543332222 1222223455666778887765 777 5666777777778888888888776554444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHH
Q psy10222 1546 LLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVV 1625 (1693)
Q Consensus 1546 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~ 1625 (1693)
........++...+ ...... ..+..+.......++..+.. ...+......-+. ....++++.++.+.....+..++
T Consensus 288 ~~~~~~~~ig~~l~-~~~~~~-~~~~~~~~~~~~~l~~~G~~-~~~p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~ 363 (413)
T PRK15403 288 WRAVPIQLVGLALL-IVGNLL-WPHVWLWSVLGTSLYAFGIG-LIFPTLFRFTLFS-NNLPKGTVSASLNMVILMVMAVS 363 (413)
T ss_pred HHHHHHHHHHHHHH-HHHHHH-ccccHHHHHHHHHHHHHHHH-HHhHHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHH
Confidence 32222222222222 111101 11111112222222222222 2223332111111 12236999999999999999999
Q ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHHHH
Q psy10222 1626 VKTGPLLFLSIGTPETFGLYGCITAFGFV 1654 (1693)
Q Consensus 1626 ~~~~~~l~~~~g~~~~f~i~~~~~ll~~v 1654 (1693)
+...+++.+. +...++...++++.+...
T Consensus 364 ~~~~g~~~~~-~~~~~~~~~~~~~~~~~~ 391 (413)
T PRK15403 364 VEIGRWLWFN-GGRLPFHLLAVVAGVIVV 391 (413)
T ss_pred HHHHHHHHHc-CCchHHHHHHHHHHHHHH
Confidence 9988887765 666677666665554433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=280.60 Aligned_cols=204 Identities=19% Similarity=0.300 Sum_probs=167.0
Q ss_pred cccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcch
Q psy10222 513 ITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRY 592 (1693)
Q Consensus 513 ~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~ 592 (1693)
.....|.++|+++.|+++||+|||++++++.++..++.++.+++++++.+++.|++.|++.++..+...+++.|..|+++
T Consensus 134 s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~ 213 (505)
T TIGR00898 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ 213 (505)
T ss_pred HHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh
Confidence 34456888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCCCC
Q psy10222 593 RGAILAIVSLAISSGIFISHLLGTFL-HWKTASAVCALFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHSAES 671 (1693)
Q Consensus 593 Rg~~~~~~~~~~~lG~~~~~~~~~~~-~wr~~~~~~~~~~~i~~~~~~~lpESp~~l~~~gr~~~a~~~l~~l~~~~~~~ 671 (1693)
|+.+.++.+.++.+|.++++.+++.. +||+.+.+.+++.++..+..+++||||||+..++|.+|+++.+++.++.+...
T Consensus 214 r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~ 293 (505)
T TIGR00898 214 RAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKK 293 (505)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999888766 79999999999988888878889999999999999999999999887655432
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhccCcccHHHHHHHHHHHHH
Q psy10222 672 ESELKSMLNHAQKITITKTENMVDKKKKREWKKNILSPEFLKPFVILLVFFFV 724 (1693)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1693)
..+.....+.++ +..++.++...++.+++|++++.++..+..|+.
T Consensus 294 ~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 338 (505)
T TIGR00898 294 LPAEVLSLSLEK--------DLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFT 338 (505)
T ss_pred CCHHHHhhhhhh--------hhhhccCCCcHHHHhCChHHHHHHHHHHHHHHH
Confidence 211110000000 000111234567778888888888877777763
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=252.27 Aligned_cols=358 Identities=15% Similarity=0.110 Sum_probs=256.9
Q ss_pred HhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh
Q psy10222 1241 TLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLA 1320 (1693)
Q Consensus 1241 ~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a 1320 (1693)
.+....+.+...+.+|.+.+ +++.++++.+++.+++.++..++++++|+++||+|||+++..+.++..++.++++++
T Consensus 14 ~~~~~~~~~~~~~~~p~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 90 (385)
T TIGR00710 14 SILGPLGIDMYLPAFPEIAA---DLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS 90 (385)
T ss_pred HHHHHHHHHHhcccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 35567788888899999985 899999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHHHH
Q psy10222 1321 TEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFPC 1396 (1693)
Q Consensus 1321 ~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~~ 1396 (1693)
+|++.+.+.|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+ +||+.|++.++..+
T Consensus 91 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~ 170 (385)
T TIGR00710 91 NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGI 170 (385)
T ss_pred ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998876 89999999888777
Q ss_pred HHHHHhc-cccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCc
Q psy10222 1397 ASFIFAY-FTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEF 1475 (1693)
Q Consensus 1397 v~lv~~~-~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1475 (1693)
+..+..+ +.||+++. +.+ .+. ++.....++.++++..
T Consensus 171 ~~~~~~~~~~~~~~~~---~~~---------------~~~------------------------~~~~~~~~~~~~~~~~ 208 (385)
T TIGR00710 171 LLSALIFFILPETLPY---EAR---------------IQI------------------------STYFETFLLLLKSKMF 208 (385)
T ss_pred HHHHHHHHhCCCCCCC---ccc---------------CCH------------------------HHHHHHHHHHHcCchh
Confidence 6655444 46776421 000 000 0001122344444443
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHhHHHHHh-hcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHH
Q psy10222 1476 LKPLAIILVFFFVQQFSGLNTLIFYTVGISK-EVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTC 1553 (1693)
Q Consensus 1476 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~ 1553 (1693)
+...+... ...........+.|.+++ +.+.+ .+.+.......++.+++.++.+++.||++||+.+..+.....
T Consensus 209 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 283 (385)
T TIGR00710 209 WGYALIYG-----ASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFA 283 (385)
T ss_pred HHHHHHHH-----HHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 32222111 112233445566676665 45777 566677777888999999999999999999998888777666
Q ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1554 LSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLF 1633 (1693)
Q Consensus 1554 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~ 1633 (1693)
++.+.+ ..... ...+.+........+.+.......+....+..|.+| +.++++.++.+.....++.+.+.+.+...
T Consensus 284 ~~~~~~-~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~ 359 (385)
T TIGR00710 284 VSAVLL-EITAI--LGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIH 359 (385)
T ss_pred HHHHHH-HHHHH--hccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 665544 22111 111222223333333334344455566677778877 57899999999888876666666666333
Q ss_pred HhcCcchhHHHHHHHHHHHHH
Q psy10222 1634 LSIGTPETFGLYGCITAFGFV 1654 (1693)
Q Consensus 1634 ~~~g~~~~f~i~~~~~ll~~v 1654 (1693)
+ +....+........+..+
T Consensus 360 ~--~~~~~~~~~~~~~~~~~~ 378 (385)
T TIGR00710 360 G--NTAWPMSLSCLVLAVVSV 378 (385)
T ss_pred c--cChHHHHHHHHHHHHHHH
Confidence 2 233444444444444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=255.25 Aligned_cols=364 Identities=16% Similarity=0.118 Sum_probs=256.0
Q ss_pred HHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcch-----hHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHH
Q psy10222 1238 LTATLAAGSAGAYSAVLLPQLESANSTIPITPED-----GTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIM 1312 (1693)
Q Consensus 1238 ~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~-----~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i 1312 (1693)
.++.++.++..+...+.+|.+.+ +++.+..+ .+++.+++.++..++++++|+++||+|||+++..+.++..+
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 96 (408)
T PRK09874 20 WLGCFLTGAAFSLVMPFLPLYVE---QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGI 96 (408)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHH---HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHH
Confidence 34456667777778888898875 67777554 48889999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHH
Q psy10222 1313 GWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTS 1388 (1693)
Q Consensus 1313 ~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f 1388 (1693)
+.+++++++|++.+++.|++.|++.+ ..+....++.|..|+++|+++.++......+|..++|.+++.+ +||+.|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 175 (408)
T PRK09874 97 VMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVF 175 (408)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 99999999999999999999999854 5677888999999999999999999999999999999998876 899999
Q ss_pred HHhHHHHHHHHHHhc-cccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhh
Q psy10222 1389 AVCALFPCASFIFAY-FTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWK 1467 (1693)
Q Consensus 1389 ~i~~i~~~v~lv~~~-~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1467 (1693)
++.++..++..+..+ ++||.++.. .+ + + +.+ .....
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~-------------~-~~~------------------------~~~~~ 212 (408)
T PRK09874 176 FITASVLFLCFLVTLFCIRENFQPV---SK--K-------------E-MLH------------------------MREVV 212 (408)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccc---cc--h-------------h-hhH------------------------HHHHH
Confidence 999888776655443 366653100 00 0 0 000 00011
Q ss_pred HhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-ch----hHHHHHHHHHHHHHHHHHHHHhhhhcCCh
Q psy10222 1468 KNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VN----EYTATIVIDIVRVVMAFVTCGLLRIFGRR 1542 (1693)
Q Consensus 1468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~----~~~~~~~~~i~~~ig~~~~g~l~dr~grr 1542 (1693)
+.+++++............. . .......+.+.+..+.+.+ .+ .+......+++.+++.+..+++.||++||
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~ 288 (408)
T PRK09874 213 TSLKNPKLVLSLFVTTLIIQ---V-ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPE 288 (408)
T ss_pred HhCcCCchHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 22333333222222111111 1 1122233344444443222 11 22334445677778888899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHH
Q psy10222 1543 PLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTL 1622 (1693)
Q Consensus 1543 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~ 1622 (1693)
+.+..+.....+..+.. .. ..+.+. ........+.......+.......+..|++.+++..++.+....+|.
T Consensus 289 ~~~~~~~~~~~~~~~~~----~~---~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ 360 (408)
T PRK09874 289 KILITALIFSVLLLIPM----SF---VQTPLQ-LGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGN 360 (408)
T ss_pred hhHHHHHHHHHHHHHHH----HH---hccHHH-HHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHH
Confidence 99888776665544433 11 112222 22222233333333445555666778888999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhc
Q psy10222 1623 FVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFL 1660 (1693)
Q Consensus 1623 ~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~~ 1660 (1693)
.++|.+.+.+.+..|++..|.+.+++.+++.++.++..
T Consensus 361 ~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 361 VTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888877765443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-22 Score=248.75 Aligned_cols=356 Identities=12% Similarity=0.012 Sum_probs=258.2
Q ss_pred HHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHH
Q psy10222 1234 AGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMG 1313 (1693)
Q Consensus 1234 ~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~ 1313 (1693)
+..+.++.++...+.+..++.+|.+.+ ++|.|+.+.+++.+.+.++..++++++|+++||+|||+++..+.++..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~---~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~ 84 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLA---QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAG 84 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333446667788999999999999996 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc---hhHHHHHH
Q psy10222 1314 WVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL---HWKTTSAV 1390 (1693)
Q Consensus 1314 ~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l---~WR~~f~i 1390 (1693)
.+++++++|++.++++|+++|++.+...+.....+.|..++++|+++++.+.....+|..+||.+++.+ .++...|.
T Consensus 85 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 164 (381)
T PRK03633 85 CAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWV 164 (381)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHH
Confidence 999999999999999999999999999998888888999999999999999999999999999999887 22333333
Q ss_pred hHHHHHHHHHHh-ccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHh
Q psy10222 1391 CALFPCASFIFA-YFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKN 1469 (1693)
Q Consensus 1391 ~~i~~~v~lv~~-~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1469 (1693)
........+... ...+|++. +++ +..+.++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~---------------------~~~---------------------------~~~~~~~~ 196 (381)
T PRK03633 165 TGLVLAAILPLLFTRILNQQA---------------------ENH---------------------------DSTSIWPM 196 (381)
T ss_pred HHHHHHHHHHHHHhcccCCCC---------------------CCC---------------------------CCCCHHHH
Confidence 332222111111 11222100 000 00112233
Q ss_pred hcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHH
Q psy10222 1470 ILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLS 1548 (1693)
Q Consensus 1470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~ 1548 (1693)
++++..+... ...... .........+.|.+.++.|.+ ...+.......++.+++.+..+++.||+++|+.+..+
T Consensus 197 ~~~~~~~~~~-~~~~~~----~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~ 271 (381)
T PRK03633 197 LKLRQARLGV-NGCIIS----GIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQ 271 (381)
T ss_pred HHhcchHHHH-HHHHHH----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHH
Confidence 4444433211 111111 111233445678888777777 5566667777888999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1549 CLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKT 1628 (1693)
Q Consensus 1549 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~ 1628 (1693)
.....++...+ . . .........+ .+.......|.......|..|++.++.+.+..+....+|+.++|.+
T Consensus 272 ~~~~~~~~~~~-~------~---~~~~~~~~~l-~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~ 340 (381)
T PRK03633 272 VFVVILGSIAM-L------S---QAAMAPALFI-LGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSF 340 (381)
T ss_pred HHHHHHHHHHH-h------h---hHHHHHHHHH-HHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766655443 1 0 1111111122 2222334456667777898888877878888888889999999999
Q ss_pred HHHHHHhcCcchhHHHHHHHHHHHHHHH
Q psy10222 1629 GPLLFLSIGTPETFGLYGCITAFGFVFL 1656 (1693)
Q Consensus 1629 ~~~l~~~~g~~~~f~i~~~~~ll~~v~~ 1656 (1693)
.+.+.++.|+...|.+.+.+.++..+..
T Consensus 341 ~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 341 TAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 9999999999989988888877665443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-24 Score=262.00 Aligned_cols=337 Identities=13% Similarity=0.057 Sum_probs=242.6
Q ss_pred hhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHHH
Q psy10222 303 GFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCV 382 (1693)
Q Consensus 303 ~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~ 382 (1693)
...+.+.|.+.++ +++|.++.++..+.+.+++++++++.|++.||+|||+++..++.+++++++++++++|++++++
T Consensus 26 ~~~~~~lp~i~~~---~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~ 102 (393)
T PRK09705 26 TSVGPLLPQLRQA---SGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLS 102 (393)
T ss_pred hccchhHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHH
Confidence 4456788888888 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhccccccc-CeEEEeecC----------CC
Q psy10222 383 GRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRH-LGLVMALVG----------PL 451 (1693)
Q Consensus 383 ~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~-gWr~~f~i~----------~~ 451 (1693)
+|+++|+|.|..++...+++.||+| +||++++|++.++..+|..+|+.+++++.++. +||+.+.+. ..
T Consensus 103 ~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~ 181 (393)
T PRK09705 103 SALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWW 181 (393)
T ss_pred HHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997 88999999999999999999999999988875 899765431 00
Q ss_pred cccccccccCcccccccccc-hhhHHHHHHHHHHHHHHhhhhhhhhhhhcccccccCCC---CcccccchhHHHHHHHHH
Q psy10222 452 PQRSYLHLGNRLFSFSYLTG-YCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQLESANS---TIPITPEDGSWIACVLSC 527 (1693)
Q Consensus 452 p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~g~~iG~~~~G 527 (1693)
...+..+..++..+...... ..+..+.......+..........+.+.++.+.+.+.. ........+.++|+++.|
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g 261 (393)
T PRK09705 182 WQSAREVASSHKTTTTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMP 261 (393)
T ss_pred HHhcCCCccccCCCcCCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHH
Confidence 00000000000000011111 11112222222222222222333444444443321111 122344467889999999
Q ss_pred HhhhhhchhHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhhhhCChhHHHHHHHhccC-cchhhHHHHHHHHHHH
Q psy10222 528 ILMDLYGRRFTNLILCVPFVLGWVIMSMAT-EVWLICVGRFLTGLSVGLSSPPSIVYIAESTE-PRYRGAILAIVSLAIS 605 (1693)
Q Consensus 528 ~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p-~~~Rg~~~~~~~~~~~ 605 (1693)
+++||+|||+.+..+..+..++..+....+ +...+ .-++.|++.+...+.......+..+ +++||+..++.+....
T Consensus 262 ~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 339 (393)
T PRK09705 262 AMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGF 339 (393)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 999999999988888777766655444323 22222 2346788888888888777777775 6789999999999999
Q ss_pred HHHHHHHHhhhhh-----hhHHHHHHhHHHHHHHHHH-hhcccCCh
Q psy10222 606 SGIFISHLLGTFL-----HWKTASAVCALFPFISCIF-VYSTPESP 645 (1693)
Q Consensus 606 lG~~~~~~~~~~~-----~wr~~~~~~~~~~~i~~~~-~~~lpESp 645 (1693)
++..++|.+.+.+ +|+..+.+..+..++.+.. ..+.||.+
T Consensus 340 ~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 340 IIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9988888777665 4778787777666655544 45567754
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=277.98 Aligned_cols=204 Identities=19% Similarity=0.275 Sum_probs=165.8
Q ss_pred cccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcch
Q psy10222 513 ITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRY 592 (1693)
Q Consensus 513 ~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~ 592 (1693)
.....|.++|++++|+++||+|||+++++++++..++.+..++++|++.+++.|++.|++.++......++++|+.++++
T Consensus 125 s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~ 204 (521)
T KOG0255|consen 125 SLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ 204 (521)
T ss_pred HHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch
Confidence 44556999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCC--
Q psy10222 593 RGAILAIVSLAISSGIFISHLLGTFL-HWKTASAVCALFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHSA-- 669 (1693)
Q Consensus 593 Rg~~~~~~~~~~~lG~~~~~~~~~~~-~wr~~~~~~~~~~~i~~~~~~~lpESp~~l~~~gr~~~a~~~l~~l~~~~~-- 669 (1693)
|+.+.++....+..|.+..+..++.. +||+.+++..++.++.++..++.||||||+..+||.+||.+.++++++.|+
T Consensus 205 R~~~~~~~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~ 284 (521)
T KOG0255|consen 205 RGLALTLGGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRK 284 (521)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCC
Confidence 99999995555555665555666555 799999999999998888877777999999999999999999999987652
Q ss_pred -CCHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhccCcccHHHHHHHHHHHH
Q psy10222 670 -ESESELKSMLNHAQKITITKTENMVDKKKKREWKKNILSPEFLKPFVILLVFFF 723 (1693)
Q Consensus 670 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1693)
+.+++.++.. .. +.++....+++..+.++++.++++++++..++.|+
T Consensus 285 ~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 332 (521)
T KOG0255|consen 285 LSVKELLRLEL-LL------RPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWF 332 (521)
T ss_pred CCcHHHHHHHH-Hh------hHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHH
Confidence 2222222211 00 11111112233457788888889999999999996
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=250.65 Aligned_cols=347 Identities=13% Similarity=0.042 Sum_probs=255.4
Q ss_pred HhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy10222 1239 TATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIIS 1318 (1693)
Q Consensus 1239 l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~ 1318 (1693)
.+.++.....+...+.+|.... +++.++.+.+++.+++.++..++++++|+++||+|||++++.+.++..++.++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~ 82 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVL---AGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLP 82 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHH
Confidence 4456677777888888888875 6888999999999999999999999999999999999999999999999999998
Q ss_pred hhh-----hHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHH
Q psy10222 1319 LAT-----EVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSA 1389 (1693)
Q Consensus 1319 ~a~-----~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~ 1389 (1693)
+++ |++.++++|+++|++.+...+...+++.|++|+++|+++.++.+....+|.+++|.+++.+ +||+.|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~ 162 (365)
T TIGR00900 83 FVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIW 162 (365)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 888 9999999999999999999999999999999999999999999999999999999998887 8999999
Q ss_pred HhHHHHHHHHHHhcc--ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhh
Q psy10222 1390 VCALFPCASFIFAYF--TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWK 1467 (1693)
Q Consensus 1390 i~~i~~~v~lv~~~~--lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1467 (1693)
+.++..++..+..++ .||.++ +.+ + +.++... ++.....+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~----~~~-~-------------~~~~~~~--------------------~~~~~~~~ 204 (365)
T TIGR00900 163 VDAVGFAISALLIVSVRIPELAA----SEI-Q-------------ALSNAVL--------------------RDTREGIK 204 (365)
T ss_pred HHHHHHHHHHHHHHhcccccCCC----ccc-c-------------ccchhHH--------------------HHHHhHHH
Confidence 988776665544433 333321 000 0 0000000 00111223
Q ss_pred HhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHH
Q psy10222 1468 KNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLA 1545 (1693)
Q Consensus 1468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l 1545 (1693)
..++++..+...... ... ..........+.|.+.++ .+.+ .+.+.......++.+++.++.+++.||.+||+..
T Consensus 205 ~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 280 (365)
T TIGR00900 205 FVLKNPLLRTLLLLA-LLF---NLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALM 280 (365)
T ss_pred HHHcCcHHHHHHHHH-HHH---HHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Confidence 344444332222111 111 111112222566777765 5776 6667777788889999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHH
Q psy10222 1546 LLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVV 1625 (1693)
Q Consensus 1546 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~ 1625 (1693)
..+....++..+.+ . .. .. + .+......+..++......+....+..|..|++.|+++.++.+....++..++
T Consensus 281 ~~~~~~~~~~~~~~-~---~~-~~-~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g 353 (365)
T TIGR00900 281 TGAIFVIGLAILVV-G---LT-PP-N-FPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLG 353 (365)
T ss_pred HHHHHHHHHHHHHH-H---hh-ch-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 87766665555444 1 11 11 1 22223333333444444556677888999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q psy10222 1626 VKTGPLLFLSIG 1637 (1693)
Q Consensus 1626 ~~~~~~l~~~~g 1637 (1693)
+.+.+.+.+..|
T Consensus 354 ~~~~g~l~~~~g 365 (365)
T TIGR00900 354 LILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHcC
Confidence 999999888654
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-24 Score=263.62 Aligned_cols=330 Identities=16% Similarity=0.132 Sum_probs=242.1
Q ss_pred HhhhhHHhhhcc-ccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHH---Hh-----cc
Q psy10222 305 SAVLLPQLQSAN-STIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIII---SS-----AT 375 (1693)
Q Consensus 305 ~~~~~P~l~~~~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~---~~-----a~ 375 (1693)
.++..|.++.+. +++|.|.++.|+..+.+.+++++++++.|+++||+||||+++.+.+.++++++.. ++ ++
T Consensus 31 ~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (392)
T PRK12382 31 VGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPF 110 (392)
T ss_pred HHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhH
Confidence 334445443321 2389999999999999999999999999999999999999999999888776543 22 35
Q ss_pred hhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC------
Q psy10222 376 KVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG------ 449 (1693)
Q Consensus 376 s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~------ 449 (1693)
+++.+++.|+++|+|.+...+...+++.|++|+|||++++|+.+.+...|.++||++++++.+++|||+.+.+.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~ 190 (392)
T PRK12382 111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLL 190 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999876553
Q ss_pred ------CCcccccccccCcccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCcc-cccchhHHHH
Q psy10222 450 ------PLPQRSYLHLGNRLFSFSYLTGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQLESANSTIP-ITPEDGSWIA 522 (1693)
Q Consensus 450 ------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~g~~iG 522 (1693)
..|+.+. .+.++.+ ..+..+.-+.......+.....+....+.+.++.+.......+. .....+.+++
T Consensus 191 ~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (392)
T PRK12382 191 AWAFNGTVRKVPA--HAGERPS---LWSVVGLIWKPGLGLALQGVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLM 265 (392)
T ss_pred HHHHHHhccCCCC--CcccCch---HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 1111100 0000000 00000000111111111112222222233333322211111111 1233456778
Q ss_pred HHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHH
Q psy10222 523 CVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSL 602 (1693)
Q Consensus 523 ~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~ 602 (1693)
+++.|++.||+|||+.+..+..+..++.++..+.++.+...+..++.|++.+...+...+.+.|..|+++||++.++.+.
T Consensus 266 ~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 345 (392)
T PRK12382 266 RVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAA 345 (392)
T ss_pred HHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999888888888887777778888888899999999998888888899999999999999999999
Q ss_pred HHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHhh
Q psy10222 603 AISSGIFISHLLGTFL----HWKTASAVCALFPFISCIFVY 639 (1693)
Q Consensus 603 ~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~~ 639 (1693)
...+|..+++.+.+.+ +|+..+.+.++..++..+..+
T Consensus 346 ~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 346 FQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 9999999998777655 799999988887777665543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-24 Score=265.32 Aligned_cols=342 Identities=17% Similarity=0.131 Sum_probs=254.0
Q ss_pred hhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcch
Q psy10222 297 SSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATK 376 (1693)
Q Consensus 297 ~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s 376 (1693)
..+......+...|.+.++ ++.++++.++..+.+.++..+++++.|++.||+|||+++..+.++++++.++++++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~---~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 102 (406)
T PRK11551 26 LEGLDLQSAGVAAPRMAQE---FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWD 102 (406)
T ss_pred HHHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc
Confidence 4455555667788888888 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC-------
Q psy10222 377 VWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG------- 449 (1693)
Q Consensus 377 ~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~------- 449 (1693)
++.+++.|+++|++.+...+...+++.|++|+++|++++|+...+..+|..++|.+++.+.+.++||+.|++.
T Consensus 103 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (406)
T PRK11551 103 FPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLL 182 (406)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998999999888763
Q ss_pred ------CCccccccccc-Cccccccc----c-cchh-hHHHHHHHHHHHHHHhhhhhhhhhhhcccccccCCC---Cccc
Q psy10222 450 ------PLPQRSYLHLG-NRLFSFSY----L-TGYC-LFQLLAAAGPIFATLGSGMTSGFSAVLLPQLESANS---TIPI 513 (1693)
Q Consensus 450 ------~~p~~~~~~~~-~~~~~~~~----~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~ 513 (1693)
..|+....... .+....+. . +... +.....................+.+.++.+.+.+.. ....
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~ 262 (406)
T PRK11551 183 VPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQI 262 (406)
T ss_pred HHHHHHhCCCChhHHhccCcchhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHH
Confidence 11221111000 00000000 0 0000 111111111111111122222333333332221111 1223
Q ss_pred ccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchh
Q psy10222 514 TPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYR 593 (1693)
Q Consensus 514 ~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~R 593 (1693)
....+.++|+++.|+++||+|||+.+..+.+...++.+...+.++.+.+.+..++.|++.++..+...++..|..|+++|
T Consensus 263 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~ 342 (406)
T PRK11551 263 AFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVR 342 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhh
Confidence 34457788999999999999999998887766666666666677777777788888998888888899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHHHHHHHhhcc
Q psy10222 594 GAILAIVSLAISSGIFISHLLGTFL-----HWKTASAVCALFPFISCIFVYST 641 (1693)
Q Consensus 594 g~~~~~~~~~~~lG~~~~~~~~~~~-----~wr~~~~~~~~~~~i~~~~~~~l 641 (1693)
|+..++.+....+|..+++.+.+.+ +|...+.......++..+..+++
T Consensus 343 g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 343 GTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred hhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888765 45666666665555555554444
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=260.59 Aligned_cols=368 Identities=14% Similarity=0.078 Sum_probs=252.8
Q ss_pred HhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh
Q psy10222 1241 TLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLA 1320 (1693)
Q Consensus 1241 ~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a 1320 (1693)
.+...++....+...|.+.+ +++.++.+.+++.+++.++..+++++.|+++||+|||++++.+.++..++.++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 80 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVE---EIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS 80 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHH---HhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh
Confidence 45667788888899999985 789999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHH-Hhhhhc----hhHHHHHHhHHHH
Q psy10222 1321 TEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAH-LLGTFL----HWKTTSAVCALFP 1395 (1693)
Q Consensus 1321 ~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~-~lg~~l----~WR~~f~i~~i~~ 1395 (1693)
++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+.+..+|..++| +++..+ +||+.|++.+++.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (379)
T TIGR00881 81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIA 160 (379)
T ss_pred hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 455544 8999999988877
Q ss_pred HHHHHHh-ccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccC
Q psy10222 1396 CASFIFA-YFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTE 1474 (1693)
Q Consensus 1396 ~v~lv~~-~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1474 (1693)
++..+.. +++||+|+....+. .++ ...+.. +.+ +..+..+.+..+...++.++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~~~----------~~~~~~----------~~~--~~~~~~~~~~~~~~~~~~~~~~~ 217 (379)
T TIGR00881 161 IIVSLICFLLLRDSPQSCGLPP-AEE----------MPNEEP----------DGD--AEKKEEELTKKQIFLQYVLLNKV 217 (379)
T ss_pred HHHHHHHheeeCCCccccccCc-ccc----------Cccccc----------ccc--cccccccccchHHHHHHHHhcch
Confidence 6654444 44777764210000 000 000000 000 00000000111222344455543
Q ss_pred chHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHH
Q psy10222 1475 FLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGT 1552 (1693)
Q Consensus 1475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~ 1552 (1693)
.+...+. .+...........+.|.+.++ .|.+ .+.+.......++.+++.++.+++.||..+|+.........
T Consensus 218 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~ 292 (379)
T TIGR00881 218 LWYISLG-----YVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFM 292 (379)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHH
Confidence 3221111 111222334455667776654 4777 66777788888899999999999999864333222222111
Q ss_pred HHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1553 CLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLL 1632 (1693)
Q Consensus 1553 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l 1632 (1693)
......+ .... . ....+...........+....+..+....+..|.+|++.|+++.|+.+....+++.++|.+.+.+
T Consensus 293 ~~~~~~~-~~~~-~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 369 (379)
T TIGR00881 293 ALIIVSL-LVYW-L-NPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYL 369 (379)
T ss_pred HHHHHHH-HHHh-c-CcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHH
Confidence 1111111 1111 1 11111222222222223333344445566788999999999999999999999999999999999
Q ss_pred HHhcCcchhH
Q psy10222 1633 FLSIGTPETF 1642 (1693)
Q Consensus 1633 ~~~~g~~~~f 1642 (1693)
.+..|++..|
T Consensus 370 ~~~~g~~~~f 379 (379)
T TIGR00881 370 ADGFGWAGAF 379 (379)
T ss_pred HHhhcccccC
Confidence 9998887653
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-24 Score=272.22 Aligned_cols=322 Identities=16% Similarity=0.099 Sum_probs=242.0
Q ss_pred hHHHhhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHH
Q psy10222 292 IMGDFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIII 371 (1693)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~ 371 (1693)
.++.+...+...+++..+|.+.++ +|.+.++.+|..+.|.+++++++++.|+++||+|||++++.+.+++++++++|
T Consensus 12 ~~~~~~~~ld~tiv~~a~p~i~~~---l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~ 88 (495)
T PRK14995 12 VLVYIPVAIDATVLHVAAPTLSMT---LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAA 88 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 466778888889999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HhcchhHHHHHHHHHHhhhccccchhhhhhhcccc-CcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC-
Q psy10222 372 SSATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETS-EPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG- 449 (1693)
Q Consensus 372 ~~a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~-p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~- 449 (1693)
++++|+++++++|++||+|.|...|...+.+.+++ |+++|++++|++.++..+|..+||++++++.+++|||+.|++.
T Consensus 89 ~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~ 168 (495)
T PRK14995 89 AFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINV 168 (495)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHH
Confidence 99999999999999999999999999999898887 6799999999999999999999999999999999999999875
Q ss_pred ------------CCcccccccccCcccccc--------------------------------------------------
Q psy10222 450 ------------PLPQRSYLHLGNRLFSFS-------------------------------------------------- 467 (1693)
Q Consensus 450 ------------~~p~~~~~~~~~~~~~~~-------------------------------------------------- 467 (1693)
..|+..... .++.+..
T Consensus 169 ~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~ 246 (495)
T PRK14995 169 PIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAA 246 (495)
T ss_pred HHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 112111000 0000000
Q ss_pred --c---ccchhhHHHHHHHHHHH-HHHhhhhhhhhhhhcccccccCC----CCcccccchhHHHHHHHHHHhhhhhchhH
Q psy10222 468 --Y---LTGYCLFQLLAAAGPIF-ATLGSGMTSGFSAVLLPQLESAN----STIPITPEDGSWIACVLSCILMDLYGRRF 537 (1693)
Q Consensus 468 --~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~g~~iG~~~~G~lsDr~GRk~ 537 (1693)
+ ...++.+.........+ ..........+.+.++......+ .........+..+++++.|++.||+|||+
T Consensus 247 ~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~ 326 (495)
T PRK14995 247 SRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRL 326 (495)
T ss_pred CCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 0 00000001111111110 00000000111111111111111 11222334577789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHh
Q psy10222 538 TNLILCVPFVLGWVIMSMA---TEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLL 614 (1693)
Q Consensus 538 ~l~~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~ 614 (1693)
.+..+.++..++..+.... ++.+......++.|+|.|...+.....+.+..|++++|.+.++.++..++|..+++.+
T Consensus 327 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai 406 (495)
T PRK14995 327 VATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAI 406 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 8888888777766554432 3556667788999999999999999999999999999999999999999999999877
Q ss_pred hhhh
Q psy10222 615 GTFL 618 (1693)
Q Consensus 615 ~~~~ 618 (1693)
.+.+
T Consensus 407 ~g~i 410 (495)
T PRK14995 407 FGLL 410 (495)
T ss_pred HHHH
Confidence 6553
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=9e-24 Score=257.92 Aligned_cols=334 Identities=10% Similarity=-0.002 Sum_probs=224.7
Q ss_pred hHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHHHH
Q psy10222 304 FSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCVG 383 (1693)
Q Consensus 304 ~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~~ 383 (1693)
..+.++|.+.++ +++|+++.|++.+.+++++++++++.|++.||+|||+++..++..+..+......++|++++++.
T Consensus 9 ~~~~~lp~i~~~---~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (368)
T TIGR00903 9 TFSPVLSLVAED---IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLAC 85 (368)
T ss_pred HHHhhHHHHHHH---hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 355788999888 99999999999999999999999999999999999998776666655554433444899999999
Q ss_pred HHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC-------------C
Q psy10222 384 RFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG-------------P 450 (1693)
Q Consensus 384 R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~-------------~ 450 (1693)
|+++|+|+|. .+++.+.++||+|++||++++|+.+.+..+|.++++++++++.+++|||+.|++. .
T Consensus 86 R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~ 164 (368)
T TIGR00903 86 QLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAA 164 (368)
T ss_pred HHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 6677778899999999999999999999999999999999999999999999773 1
Q ss_pred CcccccccccCcc-cc-c-ccccchhhHHH-HHHHHHHHHHHhhhhhhhhhhhcccccccCCCCcccccchhHHHHHHHH
Q psy10222 451 LPQRSYLHLGNRL-FS-F-SYLTGYCLFQL-LAAAGPIFATLGSGMTSGFSAVLLPQLESANSTIPITPEDGSWIACVLS 526 (1693)
Q Consensus 451 ~p~~~~~~~~~~~-~~-~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~iG~~~~ 526 (1693)
.|+.+....+... .+ . ......+.+.. .......+..........|.+.++.+.+.+ .............|.+..
T Consensus 165 lp~~p~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s-~~~~~~~~l~~~~g~~g~ 243 (368)
T TIGR00903 165 LPALPFQAAEGFGFKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLE-DIAGDAVALAILAGLIGV 243 (368)
T ss_pred cCCCCCCCCCCcchHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-hHHHHHHHHHHHHHHHHH
Confidence 2221111000000 00 0 00000111112 121222222222222334454444322111 001111223344566667
Q ss_pred HHhhhhhchh---HHHH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHH
Q psy10222 527 CILMDLYGRR---FTNL-ILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSL 602 (1693)
Q Consensus 527 G~lsDr~GRk---~~l~-~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~ 602 (1693)
++++||..|| +... ....+..+...+..+..+....++.-++.|++.+..++...++.+|..|++.||++.++.+.
T Consensus 244 ~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~ 323 (368)
T TIGR00903 244 AVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGF 323 (368)
T ss_pred HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhH
Confidence 8999988654 3222 23333333333444444455555666777888888888888999999999999999999999
Q ss_pred HHHHHHHHHHHhhhh-h-hhHHHHHHhHHHHHHHHHHhhccc
Q psy10222 603 AISSGIFISHLLGTF-L-HWKTASAVCALFPFISCIFVYSTP 642 (1693)
Q Consensus 603 ~~~lG~~~~~~~~~~-~-~wr~~~~~~~~~~~i~~~~~~~lp 642 (1693)
...+|...++.+... . +-+..+.+.+++.++..+....+|
T Consensus 324 ~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~ 365 (368)
T TIGR00903 324 TSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIALLLP 365 (368)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999888766543 3 566667666776666665544333
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-22 Score=248.23 Aligned_cols=341 Identities=12% Similarity=0.087 Sum_probs=247.5
Q ss_pred HhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh
Q psy10222 1241 TLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLA 1320 (1693)
Q Consensus 1241 ~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a 1320 (1693)
..+..+..+...|.+|.+.+ +++.++++.++..+++.++..++++++|+++||+|||+++..+.++..++.++++++
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 91 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQA---DLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV 91 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh
Confidence 34455667777788888875 889999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHHHH
Q psy10222 1321 TEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFPC 1396 (1693)
Q Consensus 1321 ~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~~ 1396 (1693)
+|++.+++.|+++|++.+...+...+++.|++|+++|++..+.......+|..++|.+++.+ +||+.|++.+.+.+
T Consensus 92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~ 171 (401)
T PRK11043 92 ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITL 171 (401)
T ss_pred cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 99999999999999999988888889999999999999999998888899999999888876 99999999988887
Q ss_pred HHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCch
Q psy10222 1397 ASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFL 1476 (1693)
Q Consensus 1397 v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1476 (1693)
+..+..++++|+++ +.+ + ++++..+++.++++.++
T Consensus 172 ~~~~~~~~~~~~~~----~~~----------------~-------------------------~~~~~~~~~~~~~~~~~ 206 (401)
T PRK11043 172 LLILPTLRLKPSKK----ARK----------------Q-------------------------SQDALTFKQLLKSKTYL 206 (401)
T ss_pred HHHHHHHHcCCCCC----ccc----------------c-------------------------chHHHHHHHHHcChhHH
Confidence 77666655665532 000 0 00011233444444333
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHH
Q psy10222 1477 KPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLS 1555 (1693)
Q Consensus 1477 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~ 1555 (1693)
...+.... ..........+.|.+.++.|.+ .+.+.......++.+++.++.+++.||+++|+.........+++
T Consensus 207 ~~~~~~~~-----~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~ 281 (401)
T PRK11043 207 GNVLIFAA-----CSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVS 281 (401)
T ss_pred HHHHHHHH-----HHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 22221111 1112334455677777777887 55666667777888899999999999999998776665555554
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10222 1556 LLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLS 1635 (1693)
Q Consensus 1556 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~ 1635 (1693)
.+.+ ...... ... ++..........+.......+.......|..| +.++++.++.+..+..++..++.+.+.+.+.
T Consensus 282 ~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 282 VIAI-WLASLL-SHP-SLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHH-HHHHHh-ccC-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4433 111111 112 22222222233333334445555556667666 5789999999999999999999988888764
Q ss_pred cCc
Q psy10222 1636 IGT 1638 (1693)
Q Consensus 1636 ~g~ 1638 (1693)
...
T Consensus 358 ~~~ 360 (401)
T PRK11043 358 PLL 360 (401)
T ss_pred Chh
Confidence 333
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-22 Score=245.50 Aligned_cols=339 Identities=23% Similarity=0.305 Sum_probs=280.4
Q ss_pred HHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy10222 1237 PLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVI 1316 (1693)
Q Consensus 1237 ~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll 1316 (1693)
+.+..+...++.....+..|.+.+ +++.++.+.++..+.+.++..++++++|+++||+|||+.+..+..+..++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAE---DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 345566778888888888898885 67899999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhH
Q psy10222 1317 ISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCA 1392 (1693)
Q Consensus 1317 ~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~ 1392 (1693)
..+++|++.+.++|++.|++.+...+...+++.|++|+++|++..++......+|..++|.+++.+ +||+.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (352)
T cd06174 81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA 160 (352)
T ss_pred HHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887 7999999998
Q ss_pred HHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcc
Q psy10222 1393 LFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILC 1472 (1693)
Q Consensus 1393 i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1472 (1693)
++.++..+...+++
T Consensus 161 ~~~~~~~~~~~~~~------------------------------------------------------------------ 174 (352)
T cd06174 161 ILGLLLALLLLFLL------------------------------------------------------------------ 174 (352)
T ss_pred HHHHHHHHHHHHHH------------------------------------------------------------------
Confidence 88777665554332
Q ss_pred cCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc-CCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChh-HHHHHH
Q psy10222 1473 TEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEV-SPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRP-LALLSC 1549 (1693)
Q Consensus 1473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~-~l~~~~ 1549 (1693)
++.... ....+...........+.|.+.++. +.+ .+.+.......++..++.++.+++.||++||+ .+..+.
T Consensus 175 ----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 249 (352)
T cd06174 175 ----RLLLLL-ALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGL 249 (352)
T ss_pred ----HHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 011111 1122222334556667777777765 666 67778888889999999999999999999999 888888
Q ss_pred HHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1550 LGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTG 1629 (1693)
Q Consensus 1550 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~ 1629 (1693)
....++.+.+ .. .++...........+.......+....+..|..|++.|+++.++.+....++..+++.+.
T Consensus 250 ~~~~i~~~~~-~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 321 (352)
T cd06174 250 LLAALGLLLL-AL-------APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA 321 (352)
T ss_pred HHHHHHHHHH-HH-------hccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776655 11 112333444445555555566778888999999999999999999999999999999999
Q ss_pred HHHHHhcCcchhHHHHHHHHHHHHHHHh
Q psy10222 1630 PLLFLSIGTPETFGLYGCITAFGFVFLY 1657 (1693)
Q Consensus 1630 ~~l~~~~g~~~~f~i~~~~~ll~~v~~~ 1657 (1693)
+.+.+..+++..+.+.+++.+++.++.+
T Consensus 322 g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 322 GLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 9999999999999999998888777654
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-24 Score=246.26 Aligned_cols=369 Identities=14% Similarity=0.072 Sum_probs=248.9
Q ss_pred hhhHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHH
Q psy10222 1227 RCDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVL 1306 (1693)
Q Consensus 1227 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~ 1306 (1693)
....+..+.+.++..++...|...+..+++.++. .+|++++..+++++.+.+.+.+.+|++|+++|||.||+++.++
T Consensus 28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~---~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG 104 (493)
T KOG1330|consen 28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQT---YFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVG 104 (493)
T ss_pred cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHH---hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeH
Confidence 3455667777788889999999999999999995 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----
Q psy10222 1307 CIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL---- 1382 (1693)
Q Consensus 1307 ~~l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l---- 1382 (1693)
.++|.++.++++++..||+++++|.+.|+|.+...|+++.+++|.+|.++|++++++++.+.++|..+|.+.|..+
T Consensus 105 ~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~ 184 (493)
T KOG1330|consen 105 IFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT 184 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred -hhHHHHHHhHHHHHHHHHHhcc-ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhh
Q psy10222 1383 -HWKTTSAVCALFPCASFIFAYF-TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDK 1460 (1693)
Q Consensus 1383 -~WR~~f~i~~i~~~v~lv~~~~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1460 (1693)
.|||.|+..++++++..++.++ .+|.+| |..|+. .+.+.. .. ...
T Consensus 185 ~~Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~-------~~~~~~------------~~---------~~t 231 (493)
T KOG1330|consen 185 FWWRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEV-------DGENKM------------VK---------PFT 231 (493)
T ss_pred cceEEEEEeehHHHHHHHHHHHhhccCccc-----cccccc-------ccCCcC------------CC---------Ccc
Confidence 5999999999999998766654 677643 111111 000000 00 000
Q ss_pred hhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHh----hcCCC-chhHHHHHHHHHHHHHHHHHHHHh
Q psy10222 1461 KKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISK----EVSPD-VNEYTATIVIDIVRVVMAFVTCGL 1535 (1693)
Q Consensus 1461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l 1535 (1693)
...+..+...+++.+..+.+-.....+. ...+.++.|.+.. -.+.+ ........+...++.+|.+++|.+
T Consensus 232 s~~kDl~~l~~~~v~v~~sl~~~a~~fv-----~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggii 306 (493)
T KOG1330|consen 232 SVWKDLKVLAKIKVFVLSSLGIIAAQFV-----IGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGII 306 (493)
T ss_pred chHHHHHHHHccCceeeehHHHHHHHHh-----ccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHH
Confidence 1111222233333333222222222211 2333344443332 23555 455566777788899999999999
Q ss_pred hhhcCCh----hHHHHHHHHHHHHHHHHHHH-HHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHH
Q psy10222 1536 LRIFGRR----PLALLSCLGTCLSLLGVASI-LKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELG 1610 (1693)
Q Consensus 1536 ~dr~grr----~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a 1610 (1693)
+||+.|+ ......-...+.+....... ..............+.++++.-...........-...|+.|++.|.++
T Consensus 307 sd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a 386 (493)
T KOG1330|consen 307 SDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTA 386 (493)
T ss_pred HHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHH
Confidence 9995431 11222222221111111000 111111111112122222222222222333334456788999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhc
Q psy10222 1611 SGISTCFAFLTLF-VVVKTGPLLFLSI 1636 (1693)
Q Consensus 1611 ~g~~~~~~~lg~~-i~~~~~~~l~~~~ 1636 (1693)
.++...+-++.+- -+|.+.+.+-++.
T Consensus 387 ~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 387 YALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred HHHHHHHHHHhccCCCcceehhHHHHh
Confidence 9999887666554 4554777777653
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.9e-24 Score=261.00 Aligned_cols=330 Identities=13% Similarity=0.028 Sum_probs=244.3
Q ss_pred hhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHH
Q psy10222 302 VGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLC 381 (1693)
Q Consensus 302 ~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll 381 (1693)
.+..+...|.+.++ +|++.++.++..+.+.+++++++++.|++.||+|||+++..+.++++++++++++++|+++++
T Consensus 19 ~~~~~~~~~~~~~~---~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (377)
T TIGR00890 19 VYTWTLLAPPLGRY---FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALY 95 (377)
T ss_pred HhhhhhHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788999988 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC------------
Q psy10222 382 VGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG------------ 449 (1693)
Q Consensus 382 ~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~------------ 449 (1693)
+.|+++|++.|..++.....+.+|+| |||++++|+...+..+|..+++++.+.+.+.+|||+.|++.
T Consensus 96 ~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 174 (377)
T TIGR00890 96 LTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGA 174 (377)
T ss_pred HHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997 68999999999999999998888877777889999888764
Q ss_pred ---CCcccccccccCcccc--cccccchhhHHHHHHHHH-HHHHHhhhhhhhhhhhcccccccCCC---CcccccchhHH
Q psy10222 450 ---PLPQRSYLHLGNRLFS--FSYLTGYCLFQLLAAAGP-IFATLGSGMTSGFSAVLLPQLESANS---TIPITPEDGSW 520 (1693)
Q Consensus 450 ---~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~g~~ 520 (1693)
+.|+.+....+.+... .......+.++....... ....+.......+..++..+++.++. .+......+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (377)
T TIGR00890 175 FLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNG 254 (377)
T ss_pred HheecCchhccccCcccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 1111110000000000 000011111122211111 11111111112222222222221111 12233445677
Q ss_pred HHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHH
Q psy10222 521 IACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEV--WLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILA 598 (1693)
Q Consensus 521 iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~ 598 (1693)
+++++.|+++||+|||+.+..+..+..++.++..+.++. ..+.+..++.|++.|...+..+.++.|..|+++||++.+
T Consensus 255 ~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g 334 (377)
T TIGR00890 255 GGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYG 334 (377)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhH
Confidence 889999999999999999988888888887776665532 334566788899988888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHH
Q psy10222 599 IVSLAISSGIFISHLLGTFL----HWKTASAVCALFPFISC 635 (1693)
Q Consensus 599 ~~~~~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~ 635 (1693)
+.+....+|..+++.+.+.+ +|+..+.+.++..++++
T Consensus 335 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 335 FLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 99999999999999877654 79988888777666543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-23 Score=261.83 Aligned_cols=349 Identities=15% Similarity=0.013 Sum_probs=215.9
Q ss_pred HHhhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHH---HHHHHhhhhccccCCchhHHHHHHHHHHHHHH
Q psy10222 294 GDFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMA---VACVLGCIAMDSCGRRFSNLILCIPFVLGWII 370 (1693)
Q Consensus 294 ~~~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~---~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l 370 (1693)
+....+.....+++..|.+.++..+.+.+..+.++..+.+...+. +++++.|+++||+||||++..+++++++++++
T Consensus 30 ~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~ 109 (432)
T PRK10406 30 GNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLV 109 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 345566777778888899988832224555555555555555554 99999999999999999999999999999999
Q ss_pred HHhcchhH--------HHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccc-----
Q psy10222 371 ISSATKVW--------LLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPT----- 437 (1693)
Q Consensus 371 ~~~a~s~~--------~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~----- 437 (1693)
+++++++. .+++.|++||+|.|+.+|.+.++++|++|++|||++.++.+.+...|.++++.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 189 (432)
T PRK10406 110 IACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLED 189 (432)
T ss_pred HhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 99999875 58899999999999999999999999999999999999999999888888887765543
Q ss_pred ---cccCeEEEeecCC------------CcccccccccCcccccccccchhhHHHH-HHHHHHHH-HHhhhhhhhhhhhc
Q psy10222 438 ---VRHLGLVMALVGP------------LPQRSYLHLGNRLFSFSYLTGYCLFQLL-AAAGPIFA-TLGSGMTSGFSAVL 500 (1693)
Q Consensus 438 ---~~~gWr~~f~i~~------------~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~ 500 (1693)
+.+|||++|++.. .|+.+....+++..........+.+..+ ......+. .........|.+.+
T Consensus 190 ~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ 269 (432)
T PRK10406 190 AELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRALKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKY 269 (432)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhhhcccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999998751 1211110000000000000011111111 11111111 11111122333333
Q ss_pred ccc-cccCCCC---cccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHH--h--cchHHHHHHHHHHHHhh
Q psy10222 501 LPQ-LESANST---IPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMS--M--ATEVWLICVGRFLTGLS 572 (1693)
Q Consensus 501 l~~-~~~~~~~---~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~--~--~~~~~~l~~~r~l~G~~ 572 (1693)
+.+ .+.+... .......+..++.++.|+++||+|||+.+....++..+...... . .++....+..-.+.+++
T Consensus 270 l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (432)
T PRK10406 270 LVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLI 349 (432)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 321 1111111 11122335567788899999999999987766554433322111 1 12222222222223333
Q ss_pred hhCChhHHHHHHHhccCcchhhHHHHHHHHHHHH-HHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHhhccc
Q psy10222 573 VGLSSPPSIVYIAESTEPRYRGAILAIVSLAISS-GIFISHLLGTFL----HWKTASAVCALFPFISCIFVYSTP 642 (1693)
Q Consensus 573 ~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~l-G~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~~~lp 642 (1693)
.+...+...++..|..|++.|+++.++.+...++ .....+.+...+ .|...+...++..++.++..++++
T Consensus 350 ~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~ 424 (432)
T PRK10406 350 VSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLH 424 (432)
T ss_pred HHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 3334455678899999999999999998765443 233355544443 355566666666666655555443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-23 Score=260.09 Aligned_cols=344 Identities=13% Similarity=0.078 Sum_probs=225.7
Q ss_pred hhhhhhhhHhhhhHH-hhhccccC--CcccchhhHHH-----HHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHH
Q psy10222 297 SSGTAVGFSAVLLPQ-LQSANSTI--PITTEDASWIA-----SMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGW 368 (1693)
Q Consensus 297 ~~~l~~~~~~~~~P~-l~~~~~~~--~~s~~~~~~~~-----s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s 368 (1693)
..+....+.+.+.|. +.++ + +.++. .++.. +..+++..+++++.|++.||+|||+++..+++++++++
T Consensus 33 ~~~~d~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ 108 (438)
T PRK09952 33 VDWYDFLLYGITAALVFNRE---FFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIAT 108 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHh---cCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 344444455555553 3333 2 44444 34443 34556677889999999999999999999999999999
Q ss_pred HHHHhcchhH--------HHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccc---
Q psy10222 369 IIISSATKVW--------LLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPT--- 437 (1693)
Q Consensus 369 ~l~~~a~s~~--------~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~--- 437 (1693)
+++++++|++ .+++.|++||++.|+.+|.+.+++.|++|+||||+.++..+.+..+|.++++.+..++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~ 188 (438)
T PRK09952 109 ALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMT 188 (438)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999987 48889999999999999999999999999999999999999999999999988777654
Q ss_pred -----cccCeEEEeecC------------CCcccccc-cccCcc-c---cccccc-chhh-HHHHHHHHH-HHHHHhhhh
Q psy10222 438 -----VRHLGLVMALVG------------PLPQRSYL-HLGNRL-F---SFSYLT-GYCL-FQLLAAAGP-IFATLGSGM 492 (1693)
Q Consensus 438 -----~~~gWr~~f~i~------------~~p~~~~~-~~~~~~-~---~~~~~~-~~~~-~~~~~~~~~-~~~~~~~~~ 492 (1693)
+.+|||.+|++. ..|+.+.. ..+.+. . +....+ ..+. ..+...... ....+....
T Consensus 189 ~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 268 (438)
T PRK09952 189 TDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYI 268 (438)
T ss_pred CHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccccccCCHHHHHHHchHHHHHHHHHHHHHHHHHHH
Confidence 368999999876 11221110 000000 0 000000 0011 111111111 111111111
Q ss_pred hhhhhhhcccc-cccCCCC---cccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHh---c-chHHHHHH
Q psy10222 493 TSGFSAVLLPQ-LESANST---IPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSM---A-TEVWLICV 564 (1693)
Q Consensus 493 ~~~~~~~~l~~-~~~~~~~---~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~---~-~~~~~l~~ 564 (1693)
...+.+.++.+ ++.+... ..........++.++.|+++||+|||+.+..+.++..++.+.... . ++...+++
T Consensus 269 ~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (438)
T PRK09952 269 VTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFF 348 (438)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 22233333221 1111110 111122344567788999999999999888777665554432222 2 23444455
Q ss_pred HHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHH-HHHHHHHHHHHHHhhhhh------hhHHHHHHhHHHHHHHHHH
Q psy10222 565 GRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIV-SLAISSGIFISHLLGTFL------HWKTASAVCALFPFISCIF 637 (1693)
Q Consensus 565 ~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~-~~~~~lG~~~~~~~~~~~------~wr~~~~~~~~~~~i~~~~ 637 (1693)
..++.+++.+...+..++++.|..|++.|+...++. +....+|..++|.+.+.+ +|+.++....+..++..+.
T Consensus 349 ~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~ 428 (438)
T PRK09952 349 SIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT 428 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 667778888888888899999999999999888885 444557888888776654 4888888887778877777
Q ss_pred hhcccCC
Q psy10222 638 VYSTPES 644 (1693)
Q Consensus 638 ~~~lpES 644 (1693)
.+.++|.
T Consensus 429 ~~~~~~~ 435 (438)
T PRK09952 429 ALLMKDN 435 (438)
T ss_pred HHHcccc
Confidence 6666664
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=247.01 Aligned_cols=341 Identities=23% Similarity=0.313 Sum_probs=248.5
Q ss_pred HHhHhhhhhhhhhhhhhhh-hhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy10222 1238 LTATLAAGSAGAYSAVLLP-QLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVI 1316 (1693)
Q Consensus 1238 ~l~~~~~~~~~~~~~~~lp-~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll 1316 (1693)
.++.++...+.....+.+| .+.+ ++|.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++..++.++
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~ 78 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAE---ELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLL 78 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHC---CSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHH
Confidence 3556778888888899999 7774 89999999999999999999999999999999999999999999999999788
Q ss_pred HHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhH
Q psy10222 1317 ISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCA 1392 (1693)
Q Consensus 1317 ~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~ 1392 (1693)
+.+++|++.++++|+++|++.+...+....++.|++|+++|+++.++......+|.+++|.+++.+ +||+.|++.+
T Consensus 79 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~ 158 (352)
T PF07690_consen 79 LAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISA 158 (352)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHH
T ss_pred hhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccccccc
Confidence 778788889999999999999999999999999999999999999999999999999999999987 8999999999
Q ss_pred HHHHHHHHHh-ccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhh-hhhHhh
Q psy10222 1393 LFPCASFIFA-YFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKL-EWKKNI 1470 (1693)
Q Consensus 1393 i~~~v~lv~~-~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 1470 (1693)
++.++..++. .+++|+|+....+.+ .+.+ .+.+++.. .++...
T Consensus 159 ~~~~~~~il~~~~~~~~~~~~~~~~~---------------~~~~--------------------~~~~~~~~~~~~~~~ 203 (352)
T PF07690_consen 159 ILSLIAAILFILFLPEPPPPRERESP---------------KESE--------------------SKKPKPLKPGFKSLF 203 (352)
T ss_dssp HHHHHHHHHHHCCC---STTTT--SS---------------TTTT----------------------HHHCCCH-CTHHH
T ss_pred chhhhhhhhHhhhhhhcccccccccc---------------cccc--------------------ccccccccccccccc
Confidence 9988887643 445544321000000 0000 00001111 133334
Q ss_pred cccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHH-HhhcCCC--chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHH
Q psy10222 1471 LCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGI-SKEVSPD--VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALL 1547 (1693)
Q Consensus 1471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~g~s--~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~ 1547 (1693)
+++..+ ..+...... .........+.|.+ .+..+.+ .+.+.......+...++.++.+++.||+++|+....
T Consensus 204 ~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (352)
T PF07690_consen 204 KNPVLW-ILLIAFFLF----FFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLI 278 (352)
T ss_dssp HHHCCH-HHHHHHHHH----HHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccchhh-hhhhhhhHH----HHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 444333 122222222 22344466777776 4445666 455566777888888889999999999999887777
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHH
Q psy10222 1548 SCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVV 1626 (1693)
Q Consensus 1548 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~ 1626 (1693)
......+..+.+ .... ...+..+... .....+.......+....+..|..|++.|+++.|+.+....+++.++|
T Consensus 279 ~~~~~~~~~~~~-~~~~---~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 279 AILLLILGALGL-LLLP---FSSSPVWLII-ALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHH-CCSH---HHCHHHHHHH-HHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHH---HhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 666666655555 1111 1112222222 333334445455777788999999999999999999999999999886
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-22 Score=245.48 Aligned_cols=366 Identities=13% Similarity=0.044 Sum_probs=246.8
Q ss_pred HHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy10222 1238 LTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVII 1317 (1693)
Q Consensus 1238 ~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~ 1317 (1693)
.++.++..++........+.+.+ |++.++.+.+|+.+.|.+++.++++++|+++||+|||++++.+.+++.++++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~ 85 (393)
T PRK11195 9 MAAQFFSALADNALLFAAIALLK---ELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLM 85 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHH
Confidence 34445555544444444444443 788889999999999999999999999999999999999999999999999998
Q ss_pred HhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc---hhHHHHHHhHHH
Q psy10222 1318 SLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL---HWKTTSAVCALF 1394 (1693)
Q Consensus 1318 ~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l---~WR~~f~i~~i~ 1394 (1693)
+++++. ++.|+++|++.+...|...+++.|++|+++|+++.++.+....+|.++||.+++.+ .|+..+++.+..
T Consensus 86 ~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~ 162 (393)
T PRK11195 86 LFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALI 162 (393)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888775 78999999999999999999999999999999999999999999999999999988 556566555544
Q ss_pred HHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccC
Q psy10222 1395 PCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTE 1474 (1693)
Q Consensus 1395 ~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1474 (1693)
.++..+....+||+|+.. +++. .+......+. ....+..++++.
T Consensus 163 ~~~~~~~~~~l~~~~~~~--~~~~--------------~~~~~~~~~~--------------------~~~~~~l~~~~~ 206 (393)
T PRK11195 163 YLLAALFNLFIPRLGARR--PGQS--------------WNPIALLRDF--------------------FHACRVLWRDKL 206 (393)
T ss_pred HHHHHHHHhcCCCCcccc--cccC--------------CCHHHHHHHH--------------------HHHHHHHHhCch
Confidence 444444445678875321 0000 0000000000 011233444544
Q ss_pred chHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHH
Q psy10222 1475 FLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGT 1552 (1693)
Q Consensus 1475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~ 1552 (1693)
.+.........+.. .....+..|.+.++ .|.+ .+.+......+++.+++++..+++.||.++|+....+.. .
T Consensus 207 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~ 280 (393)
T PRK11195 207 GRFSLAGTTLFWGA-----GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-M 280 (393)
T ss_pred hHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-H
Confidence 33322222222111 22233444444444 4776 677888888899999999999999999998887766643 3
Q ss_pred HHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccch-hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1553 CLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQAT-RELGSGISTCFAFLTLFVVVKTGPL 1631 (1693)
Q Consensus 1553 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~-r~~a~g~~~~~~~lg~~i~~~~~~~ 1631 (1693)
++....+ .. ..+.+... ......+.......+...+...|..|++. ++++.++.+..++++..++..+.+.
T Consensus 281 ~~~~~~~----~~---~~~~~~~~-~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~ 352 (393)
T PRK11195 281 GLVVLLM----AL---QHSLLPAY-PLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSL 352 (393)
T ss_pred HHHHHHH----HH---HhHHHHHH-HHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHH
Confidence 3222222 11 11222222 22222222222233444556677766554 7999999999999999999988884
Q ss_pred HHHhcCcchhHHHHHHHHHHHHHHHhhhc
Q psy10222 1632 LFLSIGTPETFGLYGCITAFGFVFLYIFL 1660 (1693)
Q Consensus 1632 l~~~~g~~~~f~i~~~~~ll~~v~~~~~~ 1660 (1693)
+ +..|.+..+.+.+...+++..+.+.+.
T Consensus 353 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK11195 353 L-VKLGVPVVAVIVGFGLLVALAMALLWR 380 (393)
T ss_pred H-HHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4 678888888877776666666655443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=267.39 Aligned_cols=336 Identities=13% Similarity=-0.014 Sum_probs=229.7
Q ss_pred hhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHh-----cc
Q psy10222 301 AVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISS-----AT 375 (1693)
Q Consensus 301 ~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~-----a~ 375 (1693)
.....+...|.+.++ +|++.++.|++.+.+.+++++++++.|+++||+|||+++..+++++++++++.++ ++
T Consensus 44 ~r~~~~~~~~~i~~~---~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 120 (467)
T PRK09556 44 IRKNFKAAQNDMIST---YGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSV 120 (467)
T ss_pred HhcChhhhhHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccc
Confidence 334455678888888 9999999999999999999999999999999999999999998888888777665 68
Q ss_pred hhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhccccccc---CeEEEeecC---
Q psy10222 376 KVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRH---LGLVMALVG--- 449 (1693)
Q Consensus 376 s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~---gWr~~f~i~--- 449 (1693)
|++.+++.|+++|++.|..+|...++++||+|++|||+++|+.+++..+|+++++++..++...+ +||..|.+.
T Consensus 121 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~ 200 (467)
T PRK09556 121 SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSII 200 (467)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987776543 688776542
Q ss_pred -------------CCcccccccc-----cC----ccc-c-cccc------c--chhhHHHHHHHHH-HHHHHhhhhhhhh
Q psy10222 450 -------------PLPQRSYLHL-----GN----RLF-S-FSYL------T--GYCLFQLLAAAGP-IFATLGSGMTSGF 496 (1693)
Q Consensus 450 -------------~~p~~~~~~~-----~~----~~~-~-~~~~------~--~~~~~~~~~~~~~-~~~~~~~~~~~~~ 496 (1693)
+.|+...... .. ... . .... . ..+.+..+..... .+..........|
T Consensus 201 ~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (467)
T PRK09556 201 ALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNW 280 (467)
T ss_pred HHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222110000 00 000 0 0000 0 0011111111111 1111111112334
Q ss_pred hhhcccc-cccCC---CCcccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHH--HHhcchHHHHHHHHHHHH
Q psy10222 497 SAVLLPQ-LESAN---STIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVI--MSMATEVWLICVGRFLTG 570 (1693)
Q Consensus 497 ~~~~l~~-~~~~~---~~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~--~~~~~~~~~l~~~r~l~G 570 (1693)
.+.++.+ ++.+. .........+.++|++++|+++||+|||+.+.....+..++..+ ....++.....+.+++.|
T Consensus 281 ~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 360 (467)
T PRK09556 281 SPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALG 360 (467)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4444322 11111 11222344578899999999999999988766544433333222 223446666777888888
Q ss_pred hhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHH-HHHHHHHhhhh----------------hhhHHHHHHhHHHHHH
Q psy10222 571 LSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISS-GIFISHLLGTF----------------LHWKTASAVCALFPFI 633 (1693)
Q Consensus 571 ~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~l-G~~~~~~~~~~----------------~~wr~~~~~~~~~~~i 633 (1693)
++..+.......+..|..|++.||++.++.+...++ |..+++.+.+. .+|+..+.+..+..++
T Consensus 361 ~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~ 440 (467)
T PRK09556 361 FLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIG 440 (467)
T ss_pred HHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHH
Confidence 766555555557788999999999999999988886 65666544332 2489988887776666
Q ss_pred HHHHhh
Q psy10222 634 SCIFVY 639 (1693)
Q Consensus 634 ~~~~~~ 639 (1693)
+++..+
T Consensus 441 ~~~~~~ 446 (467)
T PRK09556 441 CICLMA 446 (467)
T ss_pred HHHHHH
Confidence 655544
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-22 Score=248.07 Aligned_cols=350 Identities=19% Similarity=0.175 Sum_probs=240.3
Q ss_pred HhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh
Q psy10222 1241 TLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLA 1320 (1693)
Q Consensus 1241 ~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a 1320 (1693)
.+..........+++|.+.+ +++.++.+.++..+.+.++..+++++.|+++||+|||+.++.+.++..++.+.+.++
T Consensus 12 ~~~~~~~~~~~~~~lp~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~ 88 (392)
T PRK10473 12 VLLYPAGIDMYLVGLPRIAA---DLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA 88 (392)
T ss_pred HHHHHHHHHHHhhhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh
Confidence 34555555666688999885 789999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHHHH
Q psy10222 1321 TEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFPC 1396 (1693)
Q Consensus 1321 ~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~~ 1396 (1693)
+|++.++++|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+ +||+.|++.+...+
T Consensus 89 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~ 168 (392)
T PRK10473 89 ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGI 168 (392)
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998775 89999999988877
Q ss_pred HHHHHh-ccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCc
Q psy10222 1397 ASFIFA-YFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEF 1475 (1693)
Q Consensus 1397 v~lv~~-~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1475 (1693)
+..+.. +++||+++. +.+ .+ . ...+..++.++++.+
T Consensus 169 i~~~~~~~~~~~~~~~---~~~---------------~~-~------------------------~~~~~~~~~~~~~~~ 205 (392)
T PRK10473 169 LVLLLSLFILKETRPA---RAP---------------AA-S------------------------SKPRENSESLLNRFF 205 (392)
T ss_pred HHHHHHHHHcCCCCCc---ccC---------------Cc-c------------------------chHHHHHHHHhCHHH
Confidence 665544 447776420 000 00 0 000011223334333
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHhHHHHHh-hcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHH
Q psy10222 1476 LKPLAIILVFFFVQQFSGLNTLIFYTVGISK-EVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTC 1553 (1693)
Q Consensus 1476 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~ 1553 (1693)
+........... .......+.|.+++ +.|.+ .+.+......+++.+++.++.+++.||+|||+....+.....
T Consensus 206 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~ 280 (392)
T PRK10473 206 LSRLVITTLSVT-----VILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFL 280 (392)
T ss_pred HHHHHHHHHHHH-----HHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 332222221111 12233344565554 45777 555667777888899999999999999999999888877666
Q ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1554 LSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLF 1633 (1693)
Q Consensus 1554 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~ 1633 (1693)
++.+.+ .... ..+.......+...+...+. +. ....+..|.+.|+ +..+....++..+++.+.+.+.
T Consensus 281 ~~~~~~-~~~~------~~~~~~~~~~l~~~g~~~~~-~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~ 347 (392)
T PRK10473 281 AAGITL-ALSP------SHAVSLFGITLICAGFSVGF-GV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLA 347 (392)
T ss_pred HHHHHH-HHHH------HHHHHHHHHHHHHHHHHHHh-HH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHH
Confidence 665554 1111 11111222222222222222 11 2233444544443 4444555677777788888888
Q ss_pred HhcCcchhHHHHHHHHHHHHH
Q psy10222 1634 LSIGTPETFGLYGCITAFGFV 1654 (1693)
Q Consensus 1634 ~~~g~~~~f~i~~~~~ll~~v 1654 (1693)
+..|+.....+.+.+.+...+
T Consensus 348 ~~~g~~~~~~~~~~~~~~~~~ 368 (392)
T PRK10473 348 AVLGISAWNMLIGILIACSIV 368 (392)
T ss_pred HHhccchhHHHHHHHHHHHHH
Confidence 888876555555444433333
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=261.63 Aligned_cols=332 Identities=11% Similarity=0.017 Sum_probs=227.9
Q ss_pred hhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcc
Q psy10222 296 FSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSAT 375 (1693)
Q Consensus 296 ~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~ 375 (1693)
..........+...|.+.++ ++++.++.++..+.+++++++++++.|++.||+|||+++..++++++++++++++++
T Consensus 18 ~~~~~d~~~~~~~~~~l~~~---~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T TIGR02332 18 IFSFLDRINIGFAGLTMGKD---LGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT 94 (412)
T ss_pred HHHHhhhhhHHHHHHhhHhh---cCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455566677788888888 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhccccc------ccCeEEEeecC
Q psy10222 376 KVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTV------RHLGLVMALVG 449 (1693)
Q Consensus 376 s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~------~~gWr~~f~i~ 449 (1693)
|++++++.|+++|++.|..+|...+++.||+|+++||+++|+++.+.++|.+++|++++++.. .+|||++|++.
T Consensus 95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~ 174 (412)
T TIGR02332 95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLE 174 (412)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998753 47999999875
Q ss_pred -------------CCccccccc----ccCc---------c-----ccc---cccc---c--hh---hHHHHHHHH-HHHH
Q psy10222 450 -------------PLPQRSYLH----LGNR---------L-----FSF---SYLT---G--YC---LFQLLAAAG-PIFA 486 (1693)
Q Consensus 450 -------------~~p~~~~~~----~~~~---------~-----~~~---~~~~---~--~~---~~~~~~~~~-~~~~ 486 (1693)
-.|+.+... .+.+ . .+. .... . .+ ....+.... ..+.
T Consensus 175 ~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (412)
T TIGR02332 175 GFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIFTPAIMLYTLAYFCL 254 (412)
T ss_pred HHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhcChHHHHHHHHHHHH
Confidence 111111000 0000 0 000 0000 0 00 011111111 1111
Q ss_pred HHhhhhhhhhhhhccccccc--CC---CCcccccchhHHHHHHHHHHhhhhhchhHH-HHHHHHHHHHHHHHHHhcchHH
Q psy10222 487 TLGSGMTSGFSAVLLPQLES--AN---STIPITPEDGSWIACVLSCILMDLYGRRFT-NLILCVPFVLGWVIMSMATEVW 560 (1693)
Q Consensus 487 ~~~~~~~~~~~~~~l~~~~~--~~---~~~~~~~~~g~~iG~~~~G~lsDr~GRk~~-l~~~~~~~~i~~~~~~~~~~~~ 560 (1693)
.........|.+.++.++.. +. ..+......+.++|.+++|+++||+|||+. ......+..++..+.....+..
T Consensus 255 ~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (412)
T TIGR02332 255 TNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNL 334 (412)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 11222233444445443211 10 112344456788899999999999997764 3334434444333322222222
Q ss_pred HHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHH
Q psy10222 561 LICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL-----HWKTASAVCALF 630 (1693)
Q Consensus 561 ~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~-----~wr~~~~~~~~~ 630 (1693)
....+-++.++|.....+...+...|..|++.|+.+.++.+...++|..++|.+.+.. +|+..+.+.++.
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 335 IQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 2222222333444334444556667889999999999999999999999999776554 488877665543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-22 Score=249.04 Aligned_cols=358 Identities=15% Similarity=0.130 Sum_probs=244.4
Q ss_pred hhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHH--hH---HHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy10222 1242 LAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASM--AS---LPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVI 1316 (1693)
Q Consensus 1242 ~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~--~~---lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll 1316 (1693)
+.+.+|....+...+.+.++. ..+.++++.+++.+. +. ++..+++++.|+++||+|||++++.+.++..+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 81 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTF-FPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLL 81 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 457788888888877777532 124566666665543 33 333468999999999999999999999999999999
Q ss_pred HHhhhhHH--------HHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhh-------
Q psy10222 1317 ISLATEVW--------VILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTF------- 1381 (1693)
Q Consensus 1317 ~~~a~~~~--------~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~------- 1381 (1693)
+++++|+. .++++|+++|++.+...+....++.|++|+++|++..++...+..+|.++++.++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~ 161 (394)
T TIGR00883 82 IGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGD 161 (394)
T ss_pred HhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 99999875 488999999999999999999999999999999999999999999999999876543
Q ss_pred -----chhHHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccch
Q psy10222 1382 -----LHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSEN 1456 (1693)
Q Consensus 1382 -----l~WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1456 (1693)
.+||+.|++.+++.++..+....+||+|++..++++ .
T Consensus 162 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~------------------------ 203 (394)
T TIGR00883 162 DALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK--------------H------------------------ 203 (394)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc--------------c------------------------
Confidence 279999998887766665555557887643211000 0
Q ss_pred hhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHh-hcCCC-chhHHHHHHHHHHHHHHHHHHHH
Q psy10222 1457 MTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISK-EVSPD-VNEYTATIVIDIVRVVMAFVTCG 1534 (1693)
Q Consensus 1457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s-~~~~~~~~~~~i~~~ig~~~~g~ 1534 (1693)
++.+.+.++.++++. ++......... ......+....+.|.+.+ +.+.+ .+.+.......+...++.++.++
T Consensus 204 ---~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (394)
T TIGR00883 204 ---KKKRGPIRETLTKHR--KPFLLGLGLVI-ATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGA 277 (394)
T ss_pred ---ccccCCHHHHHHhch--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000111223333321 12222222222 222334556667777774 45776 55666777788889999999999
Q ss_pred hhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHH
Q psy10222 1535 LLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGIS 1614 (1693)
Q Consensus 1535 l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~ 1614 (1693)
+.||+|||+.+..+..+..+..+..... . ....+.+... ...+..+.......+....+.+|.+|++.|+++.++.
T Consensus 278 l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 353 (394)
T TIGR00883 278 LSDRIGRRPVLIIFTVLAALLAVPLLMA--L-LDSGSFTLFF-FLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLA 353 (394)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHH--H-hcCCchHHHH-HHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeeh
Confidence 9999999998775544443332211011 1 1112222222 2223333333345566678899999999999999985
Q ss_pred H-HHHHHHHHHHHHHHHHHHHhcC-cchhHHHHHHH
Q psy10222 1615 T-CFAFLTLFVVVKTGPLLFLSIG-TPETFGLYGCI 1648 (1693)
Q Consensus 1615 ~-~~~~lg~~i~~~~~~~l~~~~g-~~~~f~i~~~~ 1648 (1693)
. ....++..++|.+.+.+.++.| +...++.....
T Consensus 354 ~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 354 YNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL 389 (394)
T ss_pred hHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence 4 4456788899999999999888 55554444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-22 Score=245.28 Aligned_cols=357 Identities=13% Similarity=0.105 Sum_probs=248.7
Q ss_pred hHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHH-HHHHHHHHHHHHHH
Q psy10222 1240 ATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNL-VLCIPFIMGWVIIS 1318 (1693)
Q Consensus 1240 ~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll-~~~~l~~i~~ll~~ 1318 (1693)
..++.++......+.+|..-+ +++|.|+.+.+++.+++.++..+.+++.|+++||+|||+.++ .+..+..++.++++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~--~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~ 82 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLS--EEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA 82 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHH--cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Confidence 346667777788888886432 378999999999999999999999999999999999988755 46666677888999
Q ss_pred hhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhh--hHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhH
Q psy10222 1319 LATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVL--SALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCA 1392 (1693)
Q Consensus 1319 ~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~--~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~ 1392 (1693)
+++|++.+++.|+++|.+.+...|...++..|+.|+++|++. .+......++|.+++|.+++.+ +||+.|++.+
T Consensus 83 ~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~ 162 (375)
T TIGR00899 83 WNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAA 162 (375)
T ss_pred hcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHH
Confidence 999999999999999998888889888999999988877754 5777788889999999888876 8999999999
Q ss_pred HHHHHHHHHhc-cccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhc
Q psy10222 1393 LFPCASFIFAY-FTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNIL 1471 (1693)
Q Consensus 1393 i~~~v~lv~~~-~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1471 (1693)
+..++..+..+ ++||+|+...++ ... ...++.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~-----------------------------~~~~~~~~ 197 (375)
T TIGR00899 163 LAFVLCGVLVWLFLPSYPRGAPGA----------------LTR-----------------------------LEVRGLLA 197 (375)
T ss_pred HHHHHHHHHHHHhCCCcccCcccc----------------cCc-----------------------------chhhhhhc
Confidence 88777665554 488876421000 000 00011222
Q ss_pred ccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHh-hcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHH
Q psy10222 1472 CTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISK-EVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSC 1549 (1693)
Q Consensus 1472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~ 1549 (1693)
+++.+.- .......+. .......+.|.+.+ +.|.+ .+.+..........+++.++.+++.||++||+.+..+.
T Consensus 198 ~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~ 272 (375)
T TIGR00899 198 SRDTRLL-FVACTLMWG----CNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAA 272 (375)
T ss_pred CcchHHH-HHHHHHHHH----HHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHH
Confidence 3322221 111111111 12223344555554 45776 44555555555667778889999999999999887766
Q ss_pred HHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1550 LGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTG 1629 (1693)
Q Consensus 1550 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~ 1629 (1693)
....+....+ .. ..+.+... ......+.......+....+..|..|++ ++++.++.+...++|..++|.+.
T Consensus 273 ~~~~~~~~~~----~~---~~~~~~~~-~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~ 343 (375)
T TIGR00899 273 LAGVAFYTGL----AA---DNSLWALL-MLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVG 343 (375)
T ss_pred HHHHHHHHHH----HH---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 5544433222 11 11222222 2222222222233455567778888864 67999999999999999999999
Q ss_pred HHHHHhcCcchhHHHHHHHHHHHHHHHh
Q psy10222 1630 PLLFLSIGTPETFGLYGCITAFGFVFLY 1657 (1693)
Q Consensus 1630 ~~l~~~~g~~~~f~i~~~~~ll~~v~~~ 1657 (1693)
+.+.+..|++..+++.+++.+++.+...
T Consensus 344 g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 344 GILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 9999999999999888888777766553
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=241.42 Aligned_cols=336 Identities=15% Similarity=0.113 Sum_probs=255.2
Q ss_pred hhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHH
Q psy10222 300 TAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWL 379 (1693)
Q Consensus 300 l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ 379 (1693)
+..-..+...|.+.++ .++|.+|.|.+.+.+.+.|+++..+.|.++||.+.|+.+.+|+++.++.+++.+++++++.
T Consensus 43 l~RknF~~a~p~l~e~---~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~ 119 (448)
T COG2271 43 LTRKNFNLAMPALIED---GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFL 119 (448)
T ss_pred HHHHhHhhccHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHH
Confidence 3334456789999999 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhh--cccccccCeEEEeecC--------
Q psy10222 380 LCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLD--HLPTVRHLGLVMALVG-------- 449 (1693)
Q Consensus 380 ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg--~~l~~~~gWr~~f~i~-------- 449 (1693)
+.+.-+++|..+|..+|++.+.+..|||++|||+..|+++.+-.+|.++.|++. +++..+++||..|++.
T Consensus 120 ~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiiva 199 (448)
T COG2271 120 FAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVA 199 (448)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999886
Q ss_pred --------CCcccccccc---------cC-cccccc-------cccchhh---HHHHHHHHHHHHHHhhhhhhhhhhhcc
Q psy10222 450 --------PLPQRSYLHL---------GN-RLFSFS-------YLTGYCL---FQLLAAAGPIFATLGSGMTSGFSAVLL 501 (1693)
Q Consensus 450 --------~~p~~~~~~~---------~~-~~~~~~-------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l 501 (1693)
+.|+..-.+. +. ++.... ....+.. .-|+..+...+....-..+..|.+.++
T Consensus 200 l~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL 279 (448)
T COG2271 200 LILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYL 279 (448)
T ss_pred HHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 2332211111 00 000000 0111111 122222222333333344566777777
Q ss_pred cccccCC---CCc-ccccchhHHHHHHHHHHhhhhh--chhHHHHHHH-HHHHHHHHHHHhcc--hHHHHHHHHHHHHhh
Q psy10222 502 PQLESAN---STI-PITPEDGSWIACVLSCILMDLY--GRRFTNLILC-VPFVLGWVIMSMAT--EVWLICVGRFLTGLS 572 (1693)
Q Consensus 502 ~~~~~~~---~~~-~~~~~~g~~iG~~~~G~lsDr~--GRk~~l~~~~-~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~ 572 (1693)
.+.++-+ ... ......+++.|++++|++|||+ |||...-+.+ +...++.+..-.++ |+.+..++.++.|+.
T Consensus 280 ~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~ 359 (448)
T COG2271 280 SEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFL 359 (448)
T ss_pred HHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence 6543221 111 1233458899999999999987 7776554433 33333333333444 568889999999999
Q ss_pred hhCChhHHHHHHHhccCcchhhHHHHHHHHHHHH-HHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHh
Q psy10222 573 VGLSSPPSIVYIAESTEPRYRGAILAIVSLAISS-GIFISHLLGTFL----HWKTASAVCALFPFISCIFV 638 (1693)
Q Consensus 573 ~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~l-G~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~ 638 (1693)
+.+.....-....|..|++..|++.++.+.+..+ |...+....+.. +|...|.+..+.++++.++.
T Consensus 360 IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll 430 (448)
T COG2271 360 IYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLL 430 (448)
T ss_pred HhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888 777766554444 89988888877777665544
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=247.64 Aligned_cols=360 Identities=18% Similarity=0.192 Sum_probs=270.2
Q ss_pred CCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhhhhhch
Q psy10222 1263 STIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLAT--EVWVILAGRFLTGFALGLS 1340 (1693)
Q Consensus 1263 ~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~--~~~~lli~R~l~Gig~g~~ 1340 (1693)
++++.|+++.+++.+.++.|+.+++++.|+++||+|-|+++..+.++.++++++...+. +++.+++.|++||++.|..
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL 145 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence 46889999999999999999999999999999999999999999999999999999875 4468899999999999999
Q ss_pred hhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc-----hhHHHHHHhHHHHHHHHHHhcc-ccCChHHHHh
Q psy10222 1341 SPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL-----HWKTTSAVCALFPCASFIFAYF-TPESPPWLAS 1414 (1693)
Q Consensus 1341 ~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l-----~WR~~f~i~~i~~~v~lv~~~~-lpEsp~~l~~ 1414 (1693)
+|....+.+.|+|++||++..++...+..+|.+++.++++++ ||+++|++.+..+++..+++++ ..|+|.-
T Consensus 146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~--- 222 (466)
T KOG2532|consen 146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK--- 222 (466)
T ss_pred HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc---
Confidence 999999999999999999999999999999999998888877 8999999999999998887766 5677741
Q ss_pred cCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhh
Q psy10222 1415 KGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGL 1494 (1693)
Q Consensus 1415 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1494 (1693)
+..-+++|.+.+.+...++ ..+++.+.+++++++++.. ....+..+....++
T Consensus 223 ----------------h~~is~~El~~I~~~k~~~-------~~~~~~~vP~~~i~ts~~v-----wai~~~~f~~~~~~ 274 (466)
T KOG2532|consen 223 ----------------HPNISEKELKYIEKGKSEA-------HVKKKPPVPYKAILTSPPV-----WAIWISAFGGNWGF 274 (466)
T ss_pred ----------------CCCCCHHHHHHHHhccccc-------ccCCCCCCCHHHHHcCHHH-----HHHHHHHHHHHHHH
Confidence 1111223333333222221 0111146688999988643 33344444555678
Q ss_pred HHHHHhHHHHHhhc-CCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCCh---------hHHHHHHHHHHHHHHHHHHHH
Q psy10222 1495 NTLIFYTVGISKEV-SPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRR---------PLALLSCLGTCLSLLGVASIL 1563 (1693)
Q Consensus 1495 ~~~~~~~p~~~~~~-g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr---------~~l~~~~~~~~i~~~~~~~~~ 1563 (1693)
+.+..|.|.++++. +++ .+.+....+..+...+..+++|.++||..+| ..-.++..+.+++++.+
T Consensus 275 ~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l---- 350 (466)
T KOG2532|consen 275 YLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVL---- 350 (466)
T ss_pred HHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHee----
Confidence 88999999999876 888 8889999999999999999999999998663 22234444444444444
Q ss_pred HHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCcch
Q psy10222 1564 KFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFL---SIGTPE 1640 (1693)
Q Consensus 1564 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~---~~g~~~ 1640 (1693)
.+. ...+.+..+.++.+..+..+..... .+....+. .++..+..+|+.+.+..+.++++|.+.+.+.. ...|+.
T Consensus 351 ~~~-~~~~~~~a~~~l~~~~~~~g~~~~G-f~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~ 427 (466)
T KOG2532|consen 351 AFT-SDEHRLLAVILLTIAIGLSGFNISG-FYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRI 427 (466)
T ss_pred eec-CCCcchHHHHHHHHHHHHcccchhh-hHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHH
Confidence 111 2222333333333332222222211 12222333 44778999999999999999999999998884 236889
Q ss_pred hHHHHHHHHHHHHHHHhhhc
Q psy10222 1641 TFGLYGCITAFGFVFLYIFL 1660 (1693)
Q Consensus 1641 ~f~i~~~~~ll~~v~~~~~~ 1660 (1693)
.|.+.+++.+++.++..++.
T Consensus 428 VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 428 VFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHHHHHhchheeEee
Confidence 99999999999887665553
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=242.57 Aligned_cols=346 Identities=12% Similarity=0.067 Sum_probs=236.0
Q ss_pred CccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH---h-hhhHHHHHHHHHHHhhhhhc
Q psy10222 1264 TIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIIS---L-ATEVWVILAGRFLTGFALGL 1339 (1693)
Q Consensus 1264 ~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~---~-a~~~~~lli~R~l~Gig~g~ 1339 (1693)
|++.++.+.+++.+.+.++..++++++|+++||+|||+++..+.++..++++++. + .+|++.+++.|+++|+|.+.
T Consensus 42 ~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~ 121 (402)
T TIGR00897 42 ALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPL 121 (402)
T ss_pred HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHH
Confidence 6899999999999999999999999999999999999999999999999887653 3 35888999999999999998
Q ss_pred hhhhHhHHhhhccCCCcchhhhHHHHHHHHHHH-HHHHHhhhhc----hhHHHHHHhHHHHHHHHHHh-ccccCChHHHH
Q psy10222 1340 SSPVALVYIAETTEPKYRGVLSALLCTAVAIGI-FTAHLLGTFL----HWKTTSAVCALFPCASFIFA-YFTPESPPWLA 1413 (1693)
Q Consensus 1340 ~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~-~lg~~lg~~l----~WR~~f~i~~i~~~v~lv~~-~~lpEsp~~l~ 1413 (1693)
..+....++.|++|+++|++++++.+.+.++|. +++|++++.+ +|+..+|.......+..+.. ++.+|.++
T Consensus 122 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 198 (402)
T TIGR00897 122 FAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFT--- 198 (402)
T ss_pred HHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCC---
Confidence 888888899999999999999999999999997 6789888765 76655554443333322222 22444321
Q ss_pred hcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhh
Q psy10222 1414 SKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSG 1493 (1693)
Q Consensus 1414 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1493 (1693)
..+. + +++ +. ++.+...++.+++|..+. .....+ ....+
T Consensus 199 -~~~~-~-----------~~~---~~--------------------~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~ 237 (402)
T TIGR00897 199 -PQHM-Q-----------TRE---KF--------------------SELGKAATILFTNPNVLL----GGMVRI-INTIG 237 (402)
T ss_pred -cccc-c-----------CCc---ch--------------------hhHHHHHHHHHcChhHHH----HHHHHH-HHHHH
Confidence 0000 0 000 00 000112234455543322 222222 22334
Q ss_pred hHHHHHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHH-HHHHHHHHHHHHHHHHHHHhhccCc
Q psy10222 1494 LNTLIFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLAL-LSCLGTCLSLLGVASILKFMQGLLP 1571 (1693)
Q Consensus 1494 ~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~ 1571 (1693)
.+...++.|.+.++.|.+ .+.+.......++..++.+..|+++||++||+... .+....++..+.+ .... .....+
T Consensus 238 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l-~~~~-~~~~~~ 315 (402)
T TIGR00897 238 LFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLAL-YYIP-QHFGHS 315 (402)
T ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH-HHHH-HccCCc
Confidence 556677889888888887 55566666778899999999999999999988663 2333333332222 1111 111122
Q ss_pred hHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH
Q psy10222 1572 SFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAF 1651 (1693)
Q Consensus 1572 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll 1651 (1693)
.+.......+.. .......+. .....|..| +.|+++.|+.+....+++.++|.+.+.+.+..|+...+++.+++.++
T Consensus 316 ~~~~~~~~~~~G-~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i 392 (402)
T TIGR00897 316 FAVALIIAIALG-IFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVV 392 (402)
T ss_pred HHHHHHHHHHHH-HHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 222222222222 222223333 344567655 68999999999999999999999999999999999999999988888
Q ss_pred HHHHHhh
Q psy10222 1652 GFVFLYI 1658 (1693)
Q Consensus 1652 ~~v~~~~ 1658 (1693)
+.++..+
T Consensus 393 ~~~~~~~ 399 (402)
T TIGR00897 393 SAFLTAF 399 (402)
T ss_pred HHHHHHH
Confidence 7776654
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=243.71 Aligned_cols=363 Identities=13% Similarity=0.058 Sum_probs=251.6
Q ss_pred HHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHH
Q psy10222 1233 AAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIM 1312 (1693)
Q Consensus 1233 ~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i 1312 (1693)
.+..+.+..++.+.+....++.+|.+++ ++++++.+.+++.+.+.++..+++++.|++.||+|||+++..+++++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~---~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~ 103 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3444445557778888889999999985 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHH---HhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhh--------
Q psy10222 1313 GWVII---SLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTF-------- 1381 (1693)
Q Consensus 1313 ~~ll~---~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~-------- 1381 (1693)
+++++ ++++|++.++++|+++|+|.|...+....++.|+.|+++|++.+++.+..+.+|..++++++..
T Consensus 104 ~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~ 183 (438)
T PRK10133 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99886 5689999999999999999999999999999998888878778999999999999999877542
Q ss_pred ----------------------chhHHHHHHhH-HHHHHHHHH-hccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHH
Q psy10222 1382 ----------------------LHWKTTSAVCA-LFPCASFIF-AYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEF 1437 (1693)
Q Consensus 1382 ----------------------l~WR~~f~i~~-i~~~v~lv~-~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~ 1437 (1693)
.+||++|+... +..++.++. ...+||.|. +++ .++
T Consensus 184 ~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~--------------~~~--- 242 (438)
T PRK10133 184 QSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNH--------------SDA--- 242 (438)
T ss_pred cchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----ccc--------------ccc---
Confidence 15666776433 333333222 222455321 000 000
Q ss_pred HHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHH-Hhh-cCCC-chh
Q psy10222 1438 EFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGI-SKE-VSPD-VNE 1514 (1693)
Q Consensus 1438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~-~g~s-~~~ 1514 (1693)
+..+.....++.++++.++...+.. .... ........|.+.+ .++ .|.+ .+.
T Consensus 243 --------------------~~~~~~~~~~~ll~~~~~~~~~l~~-~~~~----~~~~~~~~~~~~~l~~~~~g~s~~~a 297 (438)
T PRK10133 243 --------------------KQGSFSASLSRLARIRHWRWAVLAQ-FCYV----GAQTACWSYLIRYAVEEIPGMTAGFA 297 (438)
T ss_pred --------------------cccchhhhHHHHHhCchHHHHHHHH-HHHH----HHHHHHHHHHHHHHhhhcCCCCHHHH
Confidence 0000011234555665544322222 1111 2223233344544 443 4887 677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccc
Q psy10222 1515 YTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLP 1594 (1693)
Q Consensus 1515 ~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 1594 (1693)
+....+..++.+++.++.+++.||++||+.+..+..+.++.++.. ... . . .+ . ...+...+++.....|..
T Consensus 298 g~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~----~~~-~-~-~~-~-~~~~~l~glg~~~i~P~~ 368 (438)
T PRK10133 298 ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLIS----AFA-G-G-HV-G-LIALTLCSAFMSIQYPTI 368 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH----HHc-C-C-hH-H-HHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999999999998887766655444333 111 1 1 11 1 222333445555666777
Q ss_pred hhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHH
Q psy10222 1595 WMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIG-TPETFGLYGCITAFGFVF 1655 (1693)
Q Consensus 1595 ~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~g-~~~~f~i~~~~~ll~~v~ 1655 (1693)
+....|.+|.+ .+++.++.. ...+|+.++|.+.+.+.+..| .+..|++.....+...++
T Consensus 369 ~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 369 FSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred HHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 78888887754 567777776 455788999999999988877 667776555544444333
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-23 Score=257.38 Aligned_cols=320 Identities=13% Similarity=0.036 Sum_probs=226.2
Q ss_pred hhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcc
Q psy10222 296 FSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSAT 375 (1693)
Q Consensus 296 ~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~ 375 (1693)
...++.........|.+.++ +|+++.+.++..+.+.+++.+++++.|++.||+|||+++..+.++++++++++++++
T Consensus 28 ~~~~~~~~~~~~~~~~i~~~---~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~ 104 (426)
T PRK12307 28 VFDGFDFMLIFYIMYLIKAD---LGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS 104 (426)
T ss_pred HHHHhHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666667788888888 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC------
Q psy10222 376 KVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG------ 449 (1693)
Q Consensus 376 s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~------ 449 (1693)
+++.+++.|+++|+|.|..++...+++.|++|+++|++++|+..++..+|.++++.+++.+.+.+|||++|++.
T Consensus 105 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~ 184 (426)
T PRK12307 105 GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLL 184 (426)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998999999988765
Q ss_pred ------CCccccccc-c--cCccc---cc------ccccchhhHHHHHHHHH-HHHHHhhhh---hhhhhhhcccccccC
Q psy10222 450 ------PLPQRSYLH-L--GNRLF---SF------SYLTGYCLFQLLAAAGP-IFATLGSGM---TSGFSAVLLPQLESA 507 (1693)
Q Consensus 450 ------~~p~~~~~~-~--~~~~~---~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~l~~~~~~ 507 (1693)
..|+.+... . ..+.. .. ......+.+........ .......+. ...+.+.++.+.+.+
T Consensus 185 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 264 (426)
T PRK12307 185 VIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFD 264 (426)
T ss_pred HHHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 112211100 0 00000 00 00000011111111111 111111111 122333333222111
Q ss_pred CCC---cccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhhhhCChhHHHH
Q psy10222 508 NST---IPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMAT--EVWLICVGRFLTGLSVGLSSPPSIV 582 (1693)
Q Consensus 508 ~~~---~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~ 582 (1693)
... .......+.++|+++.|+++||+|||+.+..+.++..+..+.....+ +...+.+..+..+++..+..+..+.
T Consensus 265 ~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (426)
T PRK12307 265 TGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPK 344 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHH
Confidence 111 12233457788999999999999999998888777666554443322 2222222222222333344556778
Q ss_pred HHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10222 583 YIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL 618 (1693)
Q Consensus 583 ~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~ 618 (1693)
++.|..|++.||++.++.+....+|..++|.+.+.+
T Consensus 345 ~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l 380 (426)
T PRK12307 345 FLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL 380 (426)
T ss_pred HHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence 899999999999999999988899999999887665
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=246.45 Aligned_cols=382 Identities=12% Similarity=0.052 Sum_probs=260.8
Q ss_pred cCcchhhhHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhc----
Q psy10222 1222 QSSYVRCDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMY---- 1297 (1693)
Q Consensus 1222 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~---- 1297 (1693)
|.+|+++||...++.+.+ ..+......++.+|...+ +.+.+.++.+.. +.....+ ++.+++|+++||+
T Consensus 5 ~l~~~~~~~~~~~~~l~~---~~gl~~~~~~~~l~~~l~---~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~ 76 (491)
T PRK11010 5 YLRIFQQPNSAILLILGF---ASGLPLALTSGTLQAWMT---VENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPF 76 (491)
T ss_pred HHHHHcccHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---hCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccC
Confidence 567888888766665544 466677788888888875 668888888886 4444443 6899999999999
Q ss_pred -hhHHH-HHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHH
Q psy10222 1298 -GRRLT-NLVLCIPFIMGWVIISLA---TEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGI 1372 (1693)
Q Consensus 1298 -GRr~~-ll~~~~l~~i~~ll~~~a---~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~ 1372 (1693)
|||+. ++.+.+...++..++++. ++++.+.+.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.
T Consensus 77 ~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~ 156 (491)
T PRK11010 77 LGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAM 156 (491)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHH
Confidence 99985 667777777777777775 4788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhc-----hhHHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhh
Q psy10222 1373 FTAHLLGTFL-----HWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAE 1447 (1693)
Q Consensus 1373 ~lg~~lg~~l-----~WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 1447 (1693)
++++.++..+ |||+.|++.++..++..+..+++||+++. +.+ + +...
T Consensus 157 llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~---~~~-~--------------~~~~---------- 208 (491)
T PRK11010 157 LVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDT---IPV-P--------------KTLE---------- 208 (491)
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCccc---ccc-c--------------cchh----------
Confidence 9998776654 79999999998877776666667887531 000 0 0000
Q ss_pred hhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHH-HHHHHHH
Q psy10222 1448 RSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTAT-IVIDIVR 1525 (1693)
Q Consensus 1448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~-~~~~i~~ 1525 (1693)
++...+.++.++++..+.. ....... ............|++.++.|++ .+.+... ....++.
T Consensus 209 ------------~~~~~~l~~~~~~~~~~~~-ll~~~l~---~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~ 272 (491)
T PRK11010 209 ------------QAVVAPLRDFFGRNNAWLI-LLLIVLY---KLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLAT 272 (491)
T ss_pred ------------hhHHHHHHHHHcCcCHHHH-HHHHHHH---HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 0001123344444432222 2111111 1111122223344444556888 5555554 3455788
Q ss_pred HHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccc
Q psy10222 1526 VVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQA 1605 (1693)
Q Consensus 1526 ~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~ 1605 (1693)
+++.+++|+++||+|+|+.+..+....++..+.+ ..... ...+.+.......+....++.+. +..+++..+..|++
T Consensus 273 iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~-~~l~~--~~~~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~ 348 (491)
T PRK11010 273 IVGALYGGILMQRLSLFRALMIFGILQGVSNAGY-WLLSI--TDKNLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKS 348 (491)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHh--ccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCC
Confidence 9999999999999999988776665555544333 11111 11222221112222111222222 33456777888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhh
Q psy10222 1606 TRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIF 1659 (1693)
Q Consensus 1606 ~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~ 1659 (1693)
.+++..++.+....+|..+++.+.+.+.+..||+..|.+.+++++++.+..+..
T Consensus 349 ~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 349 FSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988888888888876666543
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=248.24 Aligned_cols=319 Identities=14% Similarity=0.088 Sum_probs=228.8
Q ss_pred hhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q psy10222 307 VLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCVGRFL 386 (1693)
Q Consensus 307 ~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~~R~l 386 (1693)
..+|.+.++ +|+++++.++..+.+.++..+++++.|++.||+|||+++..+.+++++++++++++++++++++.|++
T Consensus 41 ~~l~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 117 (394)
T PRK10213 41 SLLTPMAQD---LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRAC 117 (394)
T ss_pred hhHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 345666666 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC-------------CCcc
Q psy10222 387 TGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG-------------PLPQ 453 (1693)
Q Consensus 387 ~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~-------------~~p~ 453 (1693)
+|++.|..+|...+++.|++|++||++++|+..++.++|..+||++++++.+.+|||+.|++. ..|+
T Consensus 118 ~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~ 197 (394)
T PRK10213 118 LGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPS 197 (394)
T ss_pred HHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999999999999999998774 1121
Q ss_pred cccccccCcccccccccchhhHHHHHHHHHHHHHH-hhhhhhhhh-hhcccccccCCCC---cccccchhHHHHHHHHHH
Q psy10222 454 RSYLHLGNRLFSFSYLTGYCLFQLLAAAGPIFATL-GSGMTSGFS-AVLLPQLESANST---IPITPEDGSWIACVLSCI 528 (1693)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~l~~~~~~~~~---~~~~~~~g~~iG~~~~G~ 528 (1693)
.+. +++..........++++.+......+..+ .......+. +.+..+.+.+... .......+.++|+++.|+
T Consensus 198 ~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~ 274 (394)
T PRK10213 198 LPG---EPSHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSF 274 (394)
T ss_pred CCc---ccccchhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 00000000011112222222212111111 111111222 2222222211111 122344577889999999
Q ss_pred hhhhhchhHHHHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHH
Q psy10222 529 LMDLYGRRFTNLILCVP-FVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSG 607 (1693)
Q Consensus 529 lsDr~GRk~~l~~~~~~-~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG 607 (1693)
+.||.+|+ .+..+..+ .....++....++.+.+.+..++.|++.+...+...+++.+..| +.++...+......++|
T Consensus 275 l~~r~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg 352 (394)
T PRK10213 275 ILKRSVKL-ALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLA 352 (394)
T ss_pred HHhccchh-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHH
Confidence 99996544 43333333 33333444455667778888899999999999999999999987 55667777777777888
Q ss_pred HHHHHHhhhhh----hhHHHHHHhHHHHHH
Q psy10222 608 IFISHLLGTFL----HWKTASAVCALFPFI 633 (1693)
Q Consensus 608 ~~~~~~~~~~~----~wr~~~~~~~~~~~i 633 (1693)
..+++.+++.+ +++..+..++...++
T Consensus 353 ~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~ 382 (394)
T PRK10213 353 NTCGAAIGGYALDNIGLTSPLMLSGTLMLL 382 (394)
T ss_pred HHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence 88888777766 677777776654433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-21 Score=237.67 Aligned_cols=330 Identities=15% Similarity=0.121 Sum_probs=231.4
Q ss_pred hhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhhhHHH
Q psy10222 1246 SAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWV 1325 (1693)
Q Consensus 1246 ~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~~~~~ 1325 (1693)
+..+...|.+|.+.+ ++|.++.+.+++.+++.++..++++++|+++||+|||+++..+.++..++.+.+.+++|++.
T Consensus 5 ~~~~~~~p~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 81 (377)
T PRK11102 5 LAIDMYLPALPVIAA---DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQ 81 (377)
T ss_pred hHHHHHhccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 345566788888885 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHHHHHHHHH
Q psy10222 1326 ILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFPCASFIF 1401 (1693)
Q Consensus 1326 lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~~v~lv~ 1401 (1693)
++++|+++|++.+...+...+++.|++|+++|++++++......+|..++|.+++.+ +||+.|++.+.+.++..+.
T Consensus 82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 161 (377)
T PRK11102 82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAAL 161 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998876 8999999988887776544
Q ss_pred h-ccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHH
Q psy10222 1402 A-YFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLA 1480 (1693)
Q Consensus 1402 ~-~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1480 (1693)
. +++||+++- ++ + .+.+. ++.....++.++++..+.
T Consensus 162 ~~~~~~~~~~~---~~---~----------~~~~~------------------------~~~~~~~~~~~~~~~~~~--- 198 (377)
T PRK11102 162 VFFFIPETLPK---ER---R----------QPFHL------------------------RTTIRNFASLFRHKRVLG--- 198 (377)
T ss_pred HHHhCCccCcc---cc---c----------CCCCh------------------------HHHHHHHHHHHcChHHHH---
Confidence 4 457776420 00 0 00000 000112233444433221
Q ss_pred HHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHH
Q psy10222 1481 IILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLG 1558 (1693)
Q Consensus 1481 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~ 1558 (1693)
. .......+.+......+.|.++.+ .|.+ .+.+.......++.+++.++.+++.||+|||+.+..+.....+..+.
T Consensus 199 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~ 276 (377)
T PRK11102 199 -Y-MLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIW 276 (377)
T ss_pred -H-HHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 1 111222233344445555655544 5777 67777788888899999999999999999999888877665444333
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHH-HHHHHHHHH
Q psy10222 1559 VASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAF-LTLFVVVKT 1628 (1693)
Q Consensus 1559 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~-lg~~i~~~~ 1628 (1693)
+ ..... .....+.......++. .......+....+..|..| +.++++.++.+..+. ++..+++.+
T Consensus 277 ~-~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 277 L-VVSAL--LDLGFWALVVGVAAFV-GCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred H-HHHHH--HhhhHHHHHHHHHHHH-HHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3 11111 1111222222222222 2222223333455677777 788999998877654 444444443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-22 Score=252.61 Aligned_cols=323 Identities=16% Similarity=0.132 Sum_probs=235.9
Q ss_pred HHHhhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHH
Q psy10222 293 MGDFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIIS 372 (1693)
Q Consensus 293 ~~~~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~ 372 (1693)
++....+......+.+.|.+.++ ++.+..+.+++.+.+.++..++.++.|++.||+|||+++..+.+++++++++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~---~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~ 95 (405)
T TIGR00891 19 LGWLLDAFDFFLVALVLAEVAGE---FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACG 95 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 34455566666677888888888 999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccC--eEEEeecC-
Q psy10222 373 SATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHL--GLVMALVG- 449 (1693)
Q Consensus 373 ~a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~g--Wr~~f~i~- 449 (1693)
++++++.+++.|+++|++.+..++...+++.|++|+++|++++|+.+.+..+|..+++.+++.+.+..+ ||+.|++.
T Consensus 96 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~ 175 (405)
T TIGR00891 96 FAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISI 175 (405)
T ss_pred HhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999888776 99888765
Q ss_pred -----------CCcccccccc--cCccc---cc------ccccc------------hhhHHH--HH--HHHHHHHHHhhh
Q psy10222 450 -----------PLPQRSYLHL--GNRLF---SF------SYLTG------------YCLFQL--LA--AAGPIFATLGSG 491 (1693)
Q Consensus 450 -----------~~p~~~~~~~--~~~~~---~~------~~~~~------------~~~~~~--~~--~~~~~~~~~~~~ 491 (1693)
..|+.+.... +.+.. .. ..... .....+ .. ........+...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (405)
T TIGR00891 176 LPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSH 255 (405)
T ss_pred HHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 1222111000 00000 00 00000 000001 11 111111111111
Q ss_pred hhhhhhhhcccc-cccCC---CCcccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHH-HHHhcchHHHHHHHH
Q psy10222 492 MTSGFSAVLLPQ-LESAN---STIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWV-IMSMATEVWLICVGR 566 (1693)
Q Consensus 492 ~~~~~~~~~l~~-~~~~~---~~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~-~~~~~~~~~~l~~~r 566 (1693)
....+.+.++.+ .+.+. ..+......+.++|+++.|+++||+|||+.+..+..+..+..+ .....++.+.+.+..
T Consensus 256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (405)
T TIGR00891 256 PIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGL 335 (405)
T ss_pred hhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 111222222211 11111 1122334557789999999999999999988877765533322 233345666777777
Q ss_pred HHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10222 567 FLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL 618 (1693)
Q Consensus 567 ~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~ 618 (1693)
++.|++.++..+..+.++.|..|++.||++.++.+....+|..+++.+.+.+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l 387 (405)
T TIGR00891 336 FFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALL 387 (405)
T ss_pred HHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888899999999999999999999999999999999887766
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=251.55 Aligned_cols=339 Identities=14% Similarity=0.053 Sum_probs=238.9
Q ss_pred hhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcc
Q psy10222 296 FSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSAT 375 (1693)
Q Consensus 296 ~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~ 375 (1693)
..++......+...|.+.++ +|.+..+.+++.+.+.++..++.++.|++.||+|||+++..+.+++++++.++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 80 (399)
T TIGR00893 4 VINYLDRANLSFAAPMLQED---LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG 80 (399)
T ss_pred hHHHHHHHhhhHhHHHHHHh---hCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc
Confidence 34556667778888998888 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC------
Q psy10222 376 KVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG------ 449 (1693)
Q Consensus 376 s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~------ 449 (1693)
+++.+++.|+++|++.+...+...+++.|++|+++|++++|+.+....+|.+++|++++++.+..|||+.|++.
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGII 160 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998999999888653
Q ss_pred -------CCccccccc---c-cCc------------ccc---cc---cccchhhHHHHH-HHHHHHHHHhhhhhhhhhhh
Q psy10222 450 -------PLPQRSYLH---L-GNR------------LFS---FS---YLTGYCLFQLLA-AAGPIFATLGSGMTSGFSAV 499 (1693)
Q Consensus 450 -------~~p~~~~~~---~-~~~------------~~~---~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 499 (1693)
..++.+..+ . +.+ ... .. .....+.+.... .....+..........+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (399)
T TIGR00893 161 WGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPT 240 (399)
T ss_pred HHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 011111000 0 000 000 00 000011122222 22222222222223333333
Q ss_pred ccccc-ccCC---CCcccccchhHHHHHHHHHHhhhhhchhH--HHHH------HHHHHHHHHHHHHhcchHHHHHHHHH
Q psy10222 500 LLPQL-ESAN---STIPITPEDGSWIACVLSCILMDLYGRRF--TNLI------LCVPFVLGWVIMSMATEVWLICVGRF 567 (1693)
Q Consensus 500 ~l~~~-~~~~---~~~~~~~~~g~~iG~~~~G~lsDr~GRk~--~l~~------~~~~~~i~~~~~~~~~~~~~l~~~r~ 567 (1693)
++.+. +.+. ..+......+.++++++.|+++||+|||+ .... +.....+........++.+.......
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (399)
T TIGR00893 241 YLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVA 320 (399)
T ss_pred HHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 33221 1111 11223334567789999999999999995 1111 11111111111111224444444444
Q ss_pred HHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh----h-hHHHHHHhHHHHHHHHHHh
Q psy10222 568 LTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL----H-WKTASAVCALFPFISCIFV 638 (1693)
Q Consensus 568 l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~----~-wr~~~~~~~~~~~i~~~~~ 638 (1693)
+.+++.+ ..+...+++.|..|++.||++.++.+....+|..+++.+.+.+ + |+..+.+.++..++..+..
T Consensus 321 ~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 321 LGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 5455554 7888999999999999999999999999999999999887765 5 8888888777776665544
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-22 Score=244.96 Aligned_cols=345 Identities=15% Similarity=0.106 Sum_probs=243.2
Q ss_pred HHhhhhhhhhhHhhhhHH-hhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHH-HHHHHHHHHHHHH
Q psy10222 294 GDFSSGTAVGFSAVLLPQ-LQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNL-ILCIPFVLGWIII 371 (1693)
Q Consensus 294 ~~~~~~l~~~~~~~~~P~-l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~-~~l~~~~~~s~l~ 371 (1693)
..+..+++.......+|. +.++ +|.++.+.|++.+.+.+...+.+++.|++.||+||||.++ .+.++.+++.+++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEE---VRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Confidence 445566666666666665 3455 9999999999999999999999999999999999998755 5666777888999
Q ss_pred HhcchhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhH--HHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC
Q psy10222 372 SSATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAF--LAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG 449 (1693)
Q Consensus 372 ~~a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a--~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~ 449 (1693)
+++++++.+++.|+++|.+.+...|...+++.|+.|+++|+++ .|....+..+|.++||++++++.+.+|||++|++.
T Consensus 82 ~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~ 161 (375)
T TIGR00899 82 AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA 161 (375)
T ss_pred HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence 9999999999999999998888899999999999988877765 68888899999999999999999999999988775
Q ss_pred -------------CCcccccccccCc-ccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhhccc-ccccCCCCcc--
Q psy10222 450 -------------PLPQRSYLHLGNR-LFSFSYLTGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLP-QLESANSTIP-- 512 (1693)
Q Consensus 450 -------------~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~-- 512 (1693)
..|+.+....+.+ ..+.+...+.+..... ................+.+.++. +++.+.....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 240 (375)
T TIGR00899 162 ALAFVLCGVLVWLFLPSYPRGAPGALTRLEVRGLLASRDTRLL-FVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLM 240 (375)
T ss_pred HHHHHHHHHHHHHhCCCcccCcccccCcchhhhhhcCcchHHH-HHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHH
Confidence 1222111100000 0011101111111111 11111111111111222222221 1111111111
Q ss_pred -cccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcc
Q psy10222 513 -ITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPR 591 (1693)
Q Consensus 513 -~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~ 591 (1693)
........++.++.|++.||+|||+.+..+.+...+......+.++.+.+.+.+++.|++.|...+....+..|..|+
T Consensus 241 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~- 319 (375)
T TIGR00899 241 MGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG- 319 (375)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-
Confidence 111223455678899999999999988877766665555555667788888889999999998888888999999875
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHhhcccC
Q psy10222 592 YRGAILAIVSLAISSGIFISHLLGTFL----HWKTASAVCALFPFISCIFVYSTPE 643 (1693)
Q Consensus 592 ~Rg~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~~~lpE 643 (1693)
+|+.+.++.+...++|..+++.+.+.+ +|+..+.+.++..++..+...+++|
T Consensus 320 ~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 320 RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 567999999999889999998877654 7899999888888887777666654
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-22 Score=248.02 Aligned_cols=342 Identities=8% Similarity=-0.002 Sum_probs=250.4
Q ss_pred HhhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhc
Q psy10222 295 DFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSA 374 (1693)
Q Consensus 295 ~~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a 374 (1693)
.+..+......+..+|.+.++ +++|.++.++..+.+.+++.+++++.|++.||+|||+++..+.+++++++++++++
T Consensus 16 ~~~~~~~~~~~g~~~~~i~~~---~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~ 92 (394)
T PRK03699 16 YALTGALVIVTGMVMGPIAEY---FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS 92 (394)
T ss_pred HHHHHHHHHHHhhhhHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455555667788888888 99999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccc-cccCeEEEeecC----
Q psy10222 375 TKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPT-VRHLGLVMALVG---- 449 (1693)
Q Consensus 375 ~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~-~~~gWr~~f~i~---- 449 (1693)
++++++++.|+++|++.|...+...+++.|++|+++||++++....+..+|..++|++.+++. +.+|||+.|.+.
T Consensus 93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~ 172 (394)
T PRK03699 93 HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVY 172 (394)
T ss_pred chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988775 468999988764
Q ss_pred ----------CCcccccccccCcccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhhccccc-ccCC---CCccccc
Q psy10222 450 ----------PLPQRSYLHLGNRLFSFSYLTGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQL-ESAN---STIPITP 515 (1693)
Q Consensus 450 ----------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~---~~~~~~~ 515 (1693)
..|+.+.... ++..+. ......+..+.......+..........|.+.++.+. +.+. ..+....
T Consensus 173 ~~~~~~~~~~~~p~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~ 250 (394)
T PRK03699 173 VAIFILTLFSEFPALGKHAP-KADKPV-AKEKWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNF 250 (394)
T ss_pred HHHHHHHHhcCCccccccCc-cccCcc-ccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHH
Confidence 1121110000 000000 0011111112222222222222222334444444321 1111 1122233
Q ss_pred chhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhH
Q psy10222 516 EDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGA 595 (1693)
Q Consensus 516 ~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~ 595 (1693)
..+..+|.++.|+++||+|||+.+.....+..+...+....++...+.+..++.|++.+..++...++..|..| +.++.
T Consensus 251 ~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~ 329 (394)
T PRK03699 251 WMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPK 329 (394)
T ss_pred HHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHH
Confidence 45778999999999999999998887777666666666666777777777888999888888888888888876 44677
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHhhccc
Q psy10222 596 ILAIVSLAISSGIFISHLLGTFL----HWKTASAVCALFPFISCIFVYSTP 642 (1693)
Q Consensus 596 ~~~~~~~~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~~~lp 642 (1693)
..+.......+|..++|.+.+.+ +|+..+.+..+..++..+....++
T Consensus 330 ~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 330 LVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence 77888888889999998877655 788888877777776665544443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-22 Score=246.71 Aligned_cols=339 Identities=15% Similarity=0.081 Sum_probs=240.5
Q ss_pred hHHHhhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHH
Q psy10222 292 IMGDFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIII 371 (1693)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~ 371 (1693)
....+..+.........+|.+.++ +|.+.++.++..+.+.+++.+++++.|++.||+|||+++..+..+++++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~~~~~---~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~ 85 (382)
T PRK10091 9 ALGTFGLGMAEFGIMGVLTELAHD---VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMF 85 (382)
T ss_pred HHHHHHHHhhHHHHHhChHHHHHH---cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence 456677788888888899999888 99999999999999999999999999999999999999999999999999999
Q ss_pred HhcchhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC--
Q psy10222 372 SSATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG-- 449 (1693)
Q Consensus 372 ~~a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~-- 449 (1693)
++++|++++++.|+++|++.|...+...+++.|++|+++|++++|+...+..+|..++|++++++.+.+|||+.|++.
T Consensus 86 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~ 165 (382)
T PRK10091 86 TLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAV 165 (382)
T ss_pred HHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHH
Confidence 999999999999999999999988999999999999999999999999999999999999999999999999988864
Q ss_pred -----------CCcccccccccCcccccccccchhhHHHHHHHH-HHHHHHhhhhhhhhhhhcccc-cccCCC---Cccc
Q psy10222 450 -----------PLPQRSYLHLGNRLFSFSYLTGYCLFQLLAAAG-PIFATLGSGMTSGFSAVLLPQ-LESANS---TIPI 513 (1693)
Q Consensus 450 -----------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~-~~~~~~---~~~~ 513 (1693)
..|+.+.. .+.......+..+....+.... ..+..........+..+++.+ .+.+.. .+..
T Consensus 166 ~~~~~~~~~~~~lp~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 242 (382)
T PRK10091 166 FNIAVLASIYFWVPDIRDE---AKGGLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMM 242 (382)
T ss_pred HHHHHHHHHHHhCCCCCcc---cccCHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 12221100 0000000000011111111111 111111110111122222221 111111 1223
Q ss_pred ccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHhhhhCChhHHHH-HHHhccCcc
Q psy10222 514 TPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMS-MATEVWLICVGRFLTGLSVGLSSPPSIV-YIAESTEPR 591 (1693)
Q Consensus 514 ~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~-~~~~~~~l~~~r~l~G~~~g~~~~~~~~-~~~E~~p~~ 591 (1693)
....+.++|+++.|++.||+|||+.+..+..+..++.++.. +.++.+...+..++.+++.++..++... ...+..|++
T Consensus 243 ~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 322 (382)
T PRK10091 243 LVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGE 322 (382)
T ss_pred HHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcch
Confidence 34457789999999999999999998888877777765543 3455556666677777776655554443 444444555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHHHHHHHh
Q psy10222 592 YRGAILAIVSLAISSGIFISHLLGTFL-----HWKTASAVCALFPFISCIFV 638 (1693)
Q Consensus 592 ~Rg~~~~~~~~~~~lG~~~~~~~~~~~-----~wr~~~~~~~~~~~i~~~~~ 638 (1693)
.++.. ..+....+|..++|.+++.+ +|+..+.+.++..++.....
T Consensus 323 ~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 323 LLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL 372 (382)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence 55554 34667788999998877654 68888888776666555443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-22 Score=246.06 Aligned_cols=336 Identities=15% Similarity=0.116 Sum_probs=240.8
Q ss_pred HHHhhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHH
Q psy10222 293 MGDFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIIS 372 (1693)
Q Consensus 293 ~~~~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~ 372 (1693)
.+.+..++........+|.+.++ +|.|.++.|++.+.+.++..+++++.|++.||+|||+++..+.+++++++++++
T Consensus 13 ~~~~~~~~~~~~~~~~lp~~~~~---~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~ 89 (381)
T PRK03633 13 CGLLLLTLAIAVLNTLVPLWLAQ---EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLG 89 (381)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666667777778888777 899999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhccccccc----CeEEEeec
Q psy10222 373 SATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRH----LGLVMALV 448 (1693)
Q Consensus 373 ~a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~----gWr~~f~i 448 (1693)
+++|++.+++.|+++|++.|...|...+.+.++.|+++||+++|+++.+..+|..+||++++.+.+.. .|+..+..
T Consensus 90 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~ 169 (381)
T PRK03633 90 LMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVL 169 (381)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 99999999999999999999999998888899999999999999999999999999999999987653 33322111
Q ss_pred C--------CCcccccccccCcccccccccchhhHHHHHH-HHHHHHHHhhhhhhhhhhhcccccccCCCC---cccccc
Q psy10222 449 G--------PLPQRSYLHLGNRLFSFSYLTGYCLFQLLAA-AGPIFATLGSGMTSGFSAVLLPQLESANST---IPITPE 516 (1693)
Q Consensus 449 ~--------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~ 516 (1693)
. ..++.. ..+++..+... ..+.+..... ..........+....+.+.+..+...+... +.....
T Consensus 170 ~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~ 245 (381)
T PRK03633 170 AAILPLLFTRILNQQ--AENHDSTSIWP--MLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLV 245 (381)
T ss_pred HHHHHHHHhcccCCC--CCCCCCCCHHH--HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1 111100 00000001000 0111111111 112222222232333333333322111111 112233
Q ss_pred hhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHH
Q psy10222 517 DGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAI 596 (1693)
Q Consensus 517 ~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~ 596 (1693)
.+..+|.+..|+++||+|||+.+..+..+..++..... + ........++.|++.+...+...+++.|..|+++++..
T Consensus 246 ~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~ 322 (381)
T PRK03633 246 SAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAM 322 (381)
T ss_pred HHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHH
Confidence 46678899999999999999998888777766654432 2 23344566777887777889899999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHh
Q psy10222 597 LAIVSLAISSGIFISHLLGTFL----HWKTASAVCALFPFISCIFV 638 (1693)
Q Consensus 597 ~~~~~~~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~ 638 (1693)
.+..+..+++|..++|.+++.+ +|+..+.+.+...++..+..
T Consensus 323 ~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 323 NQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 8888888999999999888766 68888888777666555443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=249.79 Aligned_cols=376 Identities=26% Similarity=0.449 Sum_probs=266.5
Q ss_pred ccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhhhhCChhHHHHHHHhccCc
Q psy10222 514 TPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMA---TEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEP 590 (1693)
Q Consensus 514 ~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~ 590 (1693)
....+..+++++.|+++||+|||+++.++.++..++.++..+. .+++.+++.|++.|++.+...+...+++.|..|+
T Consensus 79 ~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 158 (481)
T TIGR00879 79 IFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPK 158 (481)
T ss_pred HHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCCh
Confidence 3445777899999999999999999999999998888887554 3456899999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhh---hh----hhhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHH
Q psy10222 591 RYRGAILAIVSLAISSGIFISHLLG---TF----LHWKTASAVCALFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHW 663 (1693)
Q Consensus 591 ~~Rg~~~~~~~~~~~lG~~~~~~~~---~~----~~wr~~~~~~~~~~~i~~~~~~~lpESp~~l~~~gr~~~a~~~l~~ 663 (1693)
++|+.+.++.+....+|..+++.++ .. .+||+.+.+.++..++.++..+++||+|+++..+++.+++++.+++
T Consensus 159 ~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 238 (481)
T TIGR00879 159 ALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLAR 238 (481)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHH
Confidence 9999999999999999999999988 33 3899999998887777777788899999999888888887777776
Q ss_pred HhCCCCCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhccC-cccHHHHHHHHHHHHHHHhhhhhhHHhcHHHHHH
Q psy10222 664 LRGHSAESESELKSMLNHAQKITITKTENMVDKKKKREWKKNILS-PEFLKPFVILLVFFFVQQFSGVNTVAFYSVGILK 742 (1693)
Q Consensus 664 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~q~~G~~~~~~Y~~~i~~ 742 (1693)
.++.+....+..++........ +. +.+..+..+.+.+.. ++.+++.+....+..+.+..+.+.+.+|.+.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (481)
T TIGR00879 239 LRGTSGEDKELLDELELIDIKR---SI---EKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE 312 (481)
T ss_pred HhCCCCCcHHHHHHHHHHHHHH---HH---HHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHH
Confidence 6554433322221111111000 00 000011112222221 1134555566666666666667777777777765
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhheeccCCCccccccchhHHHHHhhhhhhccCcccchhHH
Q psy10222 743 NVSPDVNEYVATMAIDIVRVIISHMTASALCALFPLTSIIFVYFTPESPSWLASKGYTVQAEKAFHWLRGHSDEFDNELK 822 (1693)
Q Consensus 743 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1693)
+.|.+.+
T Consensus 313 ~~g~~~~------------------------------------------------------------------------- 319 (481)
T TIGR00879 313 NAGVSTD------------------------------------------------------------------------- 319 (481)
T ss_pred HcCCCch-------------------------------------------------------------------------
Confidence 5443210
Q ss_pred HHHhhhhhhHHHhhhhhccCcccchhhhhccccchhccccccccchhhHhHHHHhhcccCcCCccchhHHHHHHHHHhhc
Q psy10222 823 SILDYANSAEKAFHWLRGHSDEFDNELKSIMDYAQNITITNSEDMNYKEKICEWKKNILSPEFLKPFVILLVFFFVQQFS 902 (1693)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 902 (1693)
T Consensus 320 -------------------------------------------------------------------------------- 319 (481)
T TIGR00879 320 -------------------------------------------------------------------------------- 319 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCceeeeeeehhhhccccccchhHHHHHHHHHHHHHHHHhhhHhhhccCcceeeecchhhhhhhhhhhhhccC
Q psy10222 903 GASTQFSGASTVSFYSVAILQNVSADVNEYTATMAIDILRVIMSAVTCGLLRITGRRPIAILSSLGTAFSLLGLALMLKY 982 (1693)
Q Consensus 903 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~l~~~~~~~~~~~~~~~~~~~~ 982 (1693)
.......+..+..+++.++.+.+.||+|||+.+..+..+.+++++.++.....
T Consensus 320 ---------------------------~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (481)
T TIGR00879 320 ---------------------------HAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGAS 372 (481)
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 01122334555666788889999999999999887766666665555422110
Q ss_pred CCccCCcchhHHHHHHHHHHHhcCCcccccccccccceeeeccccceeeeeeeeecCccceeeccccccccccCCcchhh
Q psy10222 983 PQEELPSFIPVILLMSYIVFVSFGLQPLPWIMAGEHTELFFLHPSVIVKIFQVKYLGPLTIMSTVTCGLLRITGRRPIAI 1062 (1693)
Q Consensus 983 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1693)
.. +
T Consensus 373 ~~---------------------------------~-------------------------------------------- 375 (481)
T TIGR00879 373 FV---------------------------------T-------------------------------------------- 375 (481)
T ss_pred cc---------------------------------C--------------------------------------------
Confidence 00 0
Q ss_pred hhhhhhHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHhCcccccceecccccccceeheecccCCCcchhcccccc
Q psy10222 1063 LSTLGTAFSLLGLALMLKYPQEELPSFIPVILLMSYIVFVSFGVQPLPWIMAGEVRYFTTYYIIHNHLFPQVTREIGSGI 1142 (1693)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~p~~~r~~~~~~ 1142 (1693)
.+.....+..+...+.+..+++.+..+..+.+..| .+|++.|++++|+
T Consensus 376 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~p~~~~~~~~~~ 423 (481)
T TIGR00879 376 -------------------GSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSE-------------IFPLSLRPKGISI 423 (481)
T ss_pred -------------------CcccchhHHHHHHHHHHHHHHHccccCeehhhhhc-------------cCChHHHHHHHHH
Confidence 00000122333444556666777888888888899 8999999999999
Q ss_pred hhhhhhhhhhhhhhcccceeeecCCCccccccccchhhhhhC
Q psy10222 1143 TTCFGFLALFCAVKTEPLLFRSIGTPGTFGLYGKSKTAIRQN 1184 (1693)
Q Consensus 1143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~s~~~ 1184 (1693)
..+...++.++.....+.+....|+..+|++.++........
T Consensus 424 ~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~ 465 (481)
T TIGR00879 424 AVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIF 465 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHH
Confidence 999999999999999999888889999999988887665554
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-22 Score=255.14 Aligned_cols=323 Identities=16% Similarity=0.136 Sum_probs=241.8
Q ss_pred HHHhhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHH
Q psy10222 293 MGDFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIIS 372 (1693)
Q Consensus 293 ~~~~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~ 372 (1693)
++.+...+...+....+|.+.++ +|.+.++.+|+.+.+.++..++.++.|++.||+|||+++..+.+++++++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~p~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 85 (485)
T TIGR00711 9 LGTFMAVLDSTIVNVAIPTIAGD---LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCG 85 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 44555666677778888998888 999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC---
Q psy10222 373 SATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG--- 449 (1693)
Q Consensus 373 ~a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~--- 449 (1693)
+++|++.++++|+++|++.|...|...+++.|++|+++||+++|+...+..+|..+||.+++++.+++|||+.|++.
T Consensus 86 ~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~ 165 (485)
T TIGR00711 86 VAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPI 165 (485)
T ss_pred CcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ----------CCcccccccccCc---------------------cccccc------------------------------
Q psy10222 450 ----------PLPQRSYLHLGNR---------------------LFSFSY------------------------------ 468 (1693)
Q Consensus 450 ----------~~p~~~~~~~~~~---------------------~~~~~~------------------------------ 468 (1693)
..|+.+....+.. .....+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (485)
T TIGR00711 166 GIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNP 245 (485)
T ss_pred HHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 1111110000000 000000
Q ss_pred ---ccchhhHHHHH-HHHHHHHHHhhhhhhhhhhhcccccccCC----CCcccccchhHHHHHHHHHHhhhhhchhHHHH
Q psy10222 469 ---LTGYCLFQLLA-AAGPIFATLGSGMTSGFSAVLLPQLESAN----STIPITPEDGSWIACVLSCILMDLYGRRFTNL 540 (1693)
Q Consensus 469 ---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~ 540 (1693)
....+.+.... ........+.......+.+.++.+....+ .........+.++++++.|++.||+|||+.+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~ 325 (485)
T TIGR00711 246 LVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVT 325 (485)
T ss_pred ccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHH
Confidence 00001111111 11111111111111122222222111111 11223344577889999999999999999998
Q ss_pred HHHHHHHHHHHHHHh----cchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhh
Q psy10222 541 ILCVPFVLGWVIMSM----ATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGT 616 (1693)
Q Consensus 541 ~~~~~~~i~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~ 616 (1693)
.+..+..++..+..+ ..+.+.+....++.|++.+...++......|..|+++||.+.++.+....+|..+++.+.+
T Consensus 326 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g 405 (485)
T TIGR00711 326 IGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALIT 405 (485)
T ss_pred HHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877776652 1346667777889999999888888888889999999999999999999999999887665
Q ss_pred hh
Q psy10222 617 FL 618 (1693)
Q Consensus 617 ~~ 618 (1693)
.+
T Consensus 406 ~~ 407 (485)
T TIGR00711 406 TI 407 (485)
T ss_pred HH
Confidence 43
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-22 Score=249.33 Aligned_cols=336 Identities=15% Similarity=0.089 Sum_probs=228.3
Q ss_pred hhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHH
Q psy10222 300 TAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWL 379 (1693)
Q Consensus 300 l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ 379 (1693)
......+...|.+.++ +|++.++.+++.+.+.+++++++++.|++.||+|||+++.++++++++++++++++++++.
T Consensus 37 ~~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (434)
T PRK11663 37 FTRKSFNAAMPEMLAD---LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWA 113 (434)
T ss_pred HhhhhHHHhhHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3333456678888877 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC----------
Q psy10222 380 LCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG---------- 449 (1693)
Q Consensus 380 ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~---------- 449 (1693)
+++.|+++|++.|..++...+++.||+|++|||+++|+.+.+..+|..++|++++++.+.+|||+.|++.
T Consensus 114 l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~ 193 (434)
T PRK11663 114 FALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLF 193 (434)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred ---CCccccc---cccc--Cc------ccc---cc-cccc-h-----hhHHHHH-HHHHHHHHHhhhhhhhhhhhcccc-
Q psy10222 450 ---PLPQRSY---LHLG--NR------LFS---FS-YLTG-Y-----CLFQLLA-AAGPIFATLGSGMTSGFSAVLLPQ- 503 (1693)
Q Consensus 450 ---~~p~~~~---~~~~--~~------~~~---~~-~~~~-~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~- 503 (1693)
..++.+. .+.. .+ ..+ .+ .... . +.+..+. ................|.+.++.+
T Consensus 194 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~ 273 (434)
T PRK11663 194 LCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSET 273 (434)
T ss_pred HHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0111100 0000 00 000 00 0000 0 0111111 111111122222222333333321
Q ss_pred cccCC---CCcccccchhHHHHHHHHHHhhhhh--c-hhHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHhhhhC
Q psy10222 504 LESAN---STIPITPEDGSWIACVLSCILMDLY--G-RRFTNLILCVPFVLGWVIMS--MATEVWLICVGRFLTGLSVGL 575 (1693)
Q Consensus 504 ~~~~~---~~~~~~~~~g~~iG~~~~G~lsDr~--G-Rk~~l~~~~~~~~i~~~~~~--~~~~~~~l~~~r~l~G~~~g~ 575 (1693)
.+.+. .........+.++|.++.|+++||+ + ||.......+...+...... ...+.....+..+..|++..+
T Consensus 274 ~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 353 (434)
T PRK11663 274 LGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFG 353 (434)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhh
Confidence 11111 1122234457889999999999999 3 33332222211111111111 122333333444445554433
Q ss_pred ChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHh
Q psy10222 576 SSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL----HWKTASAVCALFPFISCIFV 638 (1693)
Q Consensus 576 ~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~ 638 (1693)
.......+..|..|++.||.+.++.+....+|..++|.+.+.+ +|+..+.+.++..++..+..
T Consensus 354 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~ 420 (434)
T PRK11663 354 PQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLL 420 (434)
T ss_pred HHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 3344456788999999999999999999999999998766654 78888888877776665543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-22 Score=254.21 Aligned_cols=322 Identities=14% Similarity=0.098 Sum_probs=234.8
Q ss_pred HHhhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHh
Q psy10222 294 GDFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISS 373 (1693)
Q Consensus 294 ~~~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~ 373 (1693)
+.+........+...+|.+.++ +|.++.+.+|+.+.+.++.++++++.|++.||+|||++++.++++++++++++++
T Consensus 18 ~~~~~~~~~~~~~~~~p~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 94 (471)
T PRK10504 18 GFFMQSLDTTIVNTALPSMAQS---LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL 94 (471)
T ss_pred HHHHHHHhHHHHHHHHHHHHHH---hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566678888777 9999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC----
Q psy10222 374 ATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG---- 449 (1693)
Q Consensus 374 a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~---- 449 (1693)
+++++++++.|+++|+|.|...|...+++.|++|+++|++++|+...+..+|..+||++++++.++.|||+.|++.
T Consensus 95 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~ 174 (471)
T PRK10504 95 SGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVG 174 (471)
T ss_pred hCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred ---------CCcccccccccCc--------------------cc-----------------------------ccc---c
Q psy10222 450 ---------PLPQRSYLHLGNR--------------------LF-----------------------------SFS---Y 468 (1693)
Q Consensus 450 ---------~~p~~~~~~~~~~--------------------~~-----------------------------~~~---~ 468 (1693)
..|.......+.. .. ..+ .
T Consensus 175 ~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (471)
T PRK10504 175 IIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFS 254 (471)
T ss_pred HHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccC
Confidence 1111100000000 00 000 0
Q ss_pred ccchhhHHHHHHHHH-HHHHHhhhhhhhhhhhcccccccCCC-C---cccccchhHHHHHHHHHHhhhhhchhHHHHHHH
Q psy10222 469 LTGYCLFQLLAAAGP-IFATLGSGMTSGFSAVLLPQLESANS-T---IPITPEDGSWIACVLSCILMDLYGRRFTNLILC 543 (1693)
Q Consensus 469 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~-~---~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~ 543 (1693)
.+..+.+.+...... .+.....+....+.+.+.......+. . .......+.+++.++.|+++||+|||+.+..+.
T Consensus 255 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~ 334 (471)
T PRK10504 255 LKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATT 334 (471)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 000111122222221 12122222222222222221111111 1 112223345566788999999999999998888
Q ss_pred HHHHHHHHHHHhc---chHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10222 544 VPFVLGWVIMSMA---TEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL 618 (1693)
Q Consensus 544 ~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~ 618 (1693)
.+..+...+..+. ++.+.+.+..++.|++.+...+...++..+..|++.||.+.++.++...+|..+++.+.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l 412 (471)
T PRK10504 335 LGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL 412 (471)
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777776665553 33444555677888888888888999999999999999999999999999999988776654
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-22 Score=250.44 Aligned_cols=339 Identities=18% Similarity=0.168 Sum_probs=247.2
Q ss_pred hhhhhhhhhHhhhhHHhhhccccCCcccch-----hhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHH
Q psy10222 296 FSSGTAVGFSAVLLPQLQSANSTIPITTED-----ASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWII 370 (1693)
Q Consensus 296 ~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~-----~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l 370 (1693)
+..+.........+|.+.++ +|.+..+ .+++.+.+.+...+++++.|++.||+|||+++..+.++.+++.++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~---~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 100 (408)
T PRK09874 24 FLTGAAFSLVMPFLPLYVEQ---LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVL 100 (408)
T ss_pred HHHHHHHHHhhhhHHHHHHH---hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHH
Confidence 34445555555667776666 7877654 488889999999999999999999999999999999999999999
Q ss_pred HHhcchhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecCC
Q psy10222 371 ISSATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVGP 450 (1693)
Q Consensus 371 ~~~a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~~ 450 (1693)
++++++++++++.|+++|++.+ ..+...+++.|++|++||++++|+...+..+|..++|++++.+.+.+|||+.|++..
T Consensus 101 ~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 179 (408)
T PRK09874 101 MGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITA 179 (408)
T ss_pred HHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 9999999999999999999865 568888899999999999999999999999999999999999999999998877640
Q ss_pred -------------CcccccccccCccccccc-ccchh-hHHHHHHHH-HHHHHHhhhhhhhhhhhcccccccCCCC----
Q psy10222 451 -------------LPQRSYLHLGNRLFSFSY-LTGYC-LFQLLAAAG-PIFATLGSGMTSGFSAVLLPQLESANST---- 510 (1693)
Q Consensus 451 -------------~p~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 510 (1693)
.++......+.+..+.+. ....+ +..+..... ........+....+...+..+.......
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (408)
T PRK09874 180 SVLFLCFLVTLFCIRENFQPVSKKEMLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFI 259 (408)
T ss_pred HHHHHHHHHHHHHhccCcccccchhhhHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 111100000000000000 00000 111111111 1111112222222222222222111111
Q ss_pred ---cccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhc
Q psy10222 511 ---IPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAES 587 (1693)
Q Consensus 511 ---~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~ 587 (1693)
+......+.+++.+..|+++||+|||+.+..+..+..++.+...+.++.+.+.+.+++.|++.+...+...+++.|.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 11122345667788899999999999999888887777777767777888888999999999999999999999999
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHh
Q psy10222 588 TEPRYRGAILAIVSLAISSGIFISHLLGTFL----HWKTASAVCALFPFISCIFV 638 (1693)
Q Consensus 588 ~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~ 638 (1693)
.|+++||+..+..+....+|..+++.+++.+ +|+..+.+.++..++..+..
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 394 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYS 394 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888765 79999998888777766654
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-22 Score=246.27 Aligned_cols=323 Identities=12% Similarity=0.025 Sum_probs=244.3
Q ss_pred HHHhhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHH
Q psy10222 293 MGDFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIIS 372 (1693)
Q Consensus 293 ~~~~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~ 372 (1693)
.+.+...+........+|....+ ++.+..+.+++.+.+.++..+++++.|+++||+||||++..+.++.+++.++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~ 82 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVLA---GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLP 82 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHH
Confidence 34556666677777788887777 889999999999999999999999999999999999999999999999999999
Q ss_pred hcc-----hhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEee
Q psy10222 373 SAT-----KVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMAL 447 (1693)
Q Consensus 373 ~a~-----s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~ 447 (1693)
+++ +++.+++.|+++|++.+...|...+++.|++|++||++++|+.+.+..+|.++||++++++.+.+|||+.|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~ 162 (365)
T TIGR00900 83 FVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIW 162 (365)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 888 999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred cC--------------CCcccccccccCcc-ccccc-cc----chhhHHHHHH-HHHHHHHHhh-hhhhhhhhhcccc-c
Q psy10222 448 VG--------------PLPQRSYLHLGNRL-FSFSY-LT----GYCLFQLLAA-AGPIFATLGS-GMTSGFSAVLLPQ-L 504 (1693)
Q Consensus 448 i~--------------~~p~~~~~~~~~~~-~~~~~-~~----~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~l~~-~ 504 (1693)
+. ..|+.+....++.. ...+. .. ..+.+..... ....+..... +....+.+.+..+ +
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (365)
T TIGR00900 163 VDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYL 242 (365)
T ss_pred HHHHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 64 11111110000000 00000 00 0111111111 1111111111 1111233333332 1
Q ss_pred ccCCC---CcccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHhhhhCChhHH
Q psy10222 505 ESANS---TIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATE-VWLICVGRFLTGLSVGLSSPPS 580 (1693)
Q Consensus 505 ~~~~~---~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~-~~~l~~~r~l~G~~~g~~~~~~ 580 (1693)
+.+.. .+......+.++++++.|++.||+|||+.+..+..+..++.....+.++ .+.+.+..++.|++.+...+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 322 (365)
T TIGR00900 243 GRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQ 322 (365)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 1223345577889999999999999999988887777777777666664 8888889999999999999999
Q ss_pred HHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10222 581 IVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL 618 (1693)
Q Consensus 581 ~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~ 618 (1693)
.+++.|..|+++||+..++.+....+|..+++.+.+.+
T Consensus 323 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l 360 (365)
T TIGR00900 323 GTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL 360 (365)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998877653
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=234.37 Aligned_cols=339 Identities=14% Similarity=0.099 Sum_probs=234.7
Q ss_pred HhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy10222 1239 TATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIIS 1318 (1693)
Q Consensus 1239 l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~ 1318 (1693)
+......+..+...+.+|.+.+ ++|.|+.+.+++.+.+.++..++++++|+++||+|||+++..+..+..++.+++.
T Consensus 15 ~~~~~~~~~~~~~~p~~~~i~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~ 91 (394)
T PRK11652 15 LLVAVGQMAQTIYVPAIADMAR---DLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVAL 91 (394)
T ss_pred HHHHHHHHHHHHHhccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 3334555677777788898885 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHH
Q psy10222 1319 LATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALF 1394 (1693)
Q Consensus 1319 ~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~ 1394 (1693)
+++|++.+++.|+++|++.+...+....+..|.+++++|+++.++...+..+|..++|.+++.+ +||+.|++.++.
T Consensus 92 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~ 171 (394)
T PRK11652 92 FAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLL 171 (394)
T ss_pred HHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 9999999999999999999988888889999999999999999999999999999999988876 899999998877
Q ss_pred HHHHHHH-hccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhccc
Q psy10222 1395 PCASFIF-AYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCT 1473 (1693)
Q Consensus 1395 ~~v~lv~-~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1473 (1693)
.++..+. .+++||+++.. . + +. +....+++.++++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~---~-----------------~-~~-----------------------~~~~~~~~~~~~~ 207 (394)
T PRK11652 172 GAGVTFSMARWMPETRPAD---A-----------------R-RT-----------------------RVLASYRTLLSNR 207 (394)
T ss_pred HHHHHHHHHHhCCccCccc---c-----------------c-hh-----------------------HHHHHHHHHHcCh
Confidence 7665443 34578875210 0 0 00 0011222333443
Q ss_pred CchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHH
Q psy10222 1474 EFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLG 1551 (1693)
Q Consensus 1474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~ 1551 (1693)
..+...... . ..+.+......+.+.++++ .|.+ ...+.......++.+++..+.+++.||.+++.... ...
T Consensus 208 ~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~--~~~ 280 (394)
T PRK11652 208 RFNCYLLML-I----GTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQS--VIC 280 (394)
T ss_pred HHHHHHHHH-H----HHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 332221111 1 1122233334445556655 5777 55556666667777888888888888887433222 222
Q ss_pred HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1552 TCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPL 1631 (1693)
Q Consensus 1552 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~ 1631 (1693)
..+..+.+ ..... ....+.+...... ...+.......+....+..|.+| +.++++.++.+....+|+.+++.+.+.
T Consensus 281 ~~~~~~~~-~~~~~-~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~ 356 (394)
T PRK11652 281 CLLAGLLM-WIPGW-FGVMNVWTLLVPA-ALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAM 356 (394)
T ss_pred HHHHHHHH-HHHHH-hccccHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222111 11111 1112223322222 22333333455666677778887 578999999999999999999988876
Q ss_pred HHHh
Q psy10222 1632 LFLS 1635 (1693)
Q Consensus 1632 l~~~ 1635 (1693)
+...
T Consensus 357 ~~~~ 360 (394)
T PRK11652 357 LPQT 360 (394)
T ss_pred ccCC
Confidence 6543
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-21 Score=221.58 Aligned_cols=369 Identities=15% Similarity=0.152 Sum_probs=272.0
Q ss_pred HHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHH
Q psy10222 1236 GPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWV 1315 (1693)
Q Consensus 1236 ~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~l 1315 (1693)
.-.+......+...+.++..+.++ +|++.|++|.+++.++..+..++.-++.|++.||||.|++..++.++..+.++
T Consensus 18 ~S~~af~v~F~VW~l~s~l~~~i~---~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~ 94 (417)
T COG2223 18 LSTLAFDVGFMVWTLFSPLGVFIK---SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCL 94 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc---cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHH
Confidence 333444555666777788888888 49999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhH---HHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHH----HHHhhhhch---hH
Q psy10222 1316 IISLATEV---WVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFT----AHLLGTFLH---WK 1385 (1693)
Q Consensus 1316 l~~~a~~~---~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~l----g~~lg~~l~---WR 1385 (1693)
..+++.++ +++++++.+.|++ |+.++++..++++++||+++|.++|+.. ..++|..+ +|.+....+ ||
T Consensus 95 ~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~ 172 (417)
T COG2223 95 GLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWR 172 (417)
T ss_pred HHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHH
Confidence 99998655 4999999999997 7789999999999999999999999997 66666555 455555556 99
Q ss_pred HHHHHhHHHHHHHHHHhcc-ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhh
Q psy10222 1386 TTSAVCALFPCASFIFAYF-TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKL 1464 (1693)
Q Consensus 1386 ~~f~i~~i~~~v~lv~~~~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1464 (1693)
....+-.++.++..+..++ +.|.|......+ + ..+.
T Consensus 173 ~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~-----------------~--------------------------~~~~ 209 (417)
T COG2223 173 NVAGIYVVALAIAAVLAWLGMNDVPEHRASVK-----------------P--------------------------QLPA 209 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhhhcccc-----------------c--------------------------cchh
Confidence 9999888888876665544 666653200000 0 0001
Q ss_pred hhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc-CCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCCh
Q psy10222 1465 EWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEV-SPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRR 1542 (1693)
Q Consensus 1465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr 1542 (1693)
..+..+++++.| ...+.+...++++..+..+.|.++++. +.+ .+++.......+.+.+.-+.+|+++||+|.+
T Consensus 210 ~~~~v~~~~~~W-----~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~ 284 (417)
T COG2223 210 QLKAVFSNKDTW-----LLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGR 284 (417)
T ss_pred HHHHHhcCcchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccch
Confidence 223344443322 233344456667788888889888765 777 6777777777777888889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHH
Q psy10222 1543 PLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTL 1622 (1693)
Q Consensus 1543 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~ 1622 (1693)
+.+...+..++++.... ...........+.......++........-....+-.+...+|. ..+...|+..+++.+|+
T Consensus 285 rv~~~~f~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGG 362 (417)
T COG2223 285 RVTLAVFVGMALAAALL-SLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGG 362 (417)
T ss_pred hHHHHHHHHHHHHHHHH-HccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccc
Confidence 99998888888887776 22211111112222222222333322222233345667777775 56889999999999999
Q ss_pred HHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHHHhhh
Q psy10222 1623 FVVVKTGPLLFLSIG-TPETFGLYGCITAFGFVFLYIF 1659 (1693)
Q Consensus 1623 ~i~~~~~~~l~~~~g-~~~~f~i~~~~~ll~~v~~~~~ 1659 (1693)
+..|...+..++..| +...|+++..+.+++.+..+..
T Consensus 363 f~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 363 FFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred cchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988 7778888888888888877644
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=239.50 Aligned_cols=289 Identities=12% Similarity=0.067 Sum_probs=216.4
Q ss_pred HHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHH
Q psy10222 1231 LIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPF 1310 (1693)
Q Consensus 1231 ~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~ 1310 (1693)
+.++..+++..+....|...++ .+.+..+.+|.+....+.+++.++|+++++++.+++|.+.||++-.+.+..+.+++
T Consensus 44 l~i~~~~~~~y~~~~~d~~si~--~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w 121 (495)
T KOG2533|consen 44 LFILPFLCYLYFHAYLDKSSIV--NASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILW 121 (495)
T ss_pred HHHHHHHHHHHHHHhcchhcch--hHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHH
Confidence 3445555666666666665443 34444445689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc--------
Q psy10222 1311 IMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL-------- 1382 (1693)
Q Consensus 1311 ~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l-------- 1382 (1693)
++.+++.+..+|++.+++.|++.|+..++..|....+++-|+.+++||+.++++....++|.++|.+++..+
T Consensus 122 ~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~ 201 (495)
T KOG2533|consen 122 GLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG 201 (495)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999987772
Q ss_pred --hhHHHHHHhHHHHHHHHHHhc-cccCChH--HHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchh
Q psy10222 1383 --HWKTTSAVCALFPCASFIFAY-FTPESPP--WLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENM 1457 (1693)
Q Consensus 1383 --~WR~~f~i~~i~~~v~lv~~~-~lpEsp~--~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1457 (1693)
||||.|.+.++++++..+..+ ++|+.|. |+..+. |-.-..++.+..+ ... .
T Consensus 202 ~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~---ek~~~~~~~~~~~--------------~~~-------~ 257 (495)
T KOG2533|consen 202 LAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDE---EKELVVERLRESP--------------SGG-------I 257 (495)
T ss_pred cCCceeehhHHHHHHHHHHheEEEEecCChhhccccchH---HHHHHHHHHHhcc--------------CCC-------c
Confidence 899999999999888776554 4899985 211111 0000011111100 000 0
Q ss_pred hhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHHh
Q psy10222 1458 TDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVMAFVTCGL 1535 (1693)
Q Consensus 1458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g~l 1535 (1693)
.++.+....++.++++..+ .. .+..++.....+.+.+|+|.++.+ .+++ .++.....+..++++++.++++++
T Consensus 258 ~~~~~~~~~~~a~~dp~vw----~~-~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~l 332 (495)
T KOG2533|consen 258 ENKFKWKGFKEALKDPGVW----PF-SLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYL 332 (495)
T ss_pred ccccCHHHHHHHHhchhHH----HH-HHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHH
Confidence 0113445566777776433 22 222333333467788999999988 3577 788889999999999999999999
Q ss_pred hhhc----CChhHHHHHHH
Q psy10222 1536 LRIF----GRRPLALLSCL 1550 (1693)
Q Consensus 1536 ~dr~----grr~~l~~~~~ 1550 (1693)
+||. .+|........
T Consensus 333 sdr~~~~~~~~~~~~~~~~ 351 (495)
T KOG2533|consen 333 SDRLKTIFARRLLFIVFLC 351 (495)
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 9994 45544444333
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=247.11 Aligned_cols=324 Identities=16% Similarity=0.145 Sum_probs=210.7
Q ss_pred hHHHhhhhhhhhhHhhhhHHhhhccccCCcccchhhHHH-HHH-----HHHHHHHHHHhhhhccccCCchhHHHHHHHHH
Q psy10222 292 IMGDFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIA-SMA-----ALPMAVACVLGCIAMDSCGRRFSNLILCIPFV 365 (1693)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~-s~~-----~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~ 365 (1693)
.++.+........++...|.+.++ ++.++.+.++.. +.. ++...+++++.|++.||+||||+++.+.++++
T Consensus 21 ~~~~~~~~~d~~~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~ 97 (434)
T PRK15075 21 TSGNFLEMFDFFLFGFYATAIAKT---FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMA 97 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHH
Confidence 345566777777888999999998 888877765443 222 22234678999999999999999999999999
Q ss_pred HHHHHHHhcchhHH--------HHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhccc-
Q psy10222 366 LGWIIISSATKVWL--------LCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLP- 436 (1693)
Q Consensus 366 ~~s~l~~~a~s~~~--------ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l- 436 (1693)
+++++++++++++. ++++|+++|++.|..++...++++||+|+++||+++++.+.+..+|..+++.+++.+
T Consensus 98 ~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~ 177 (434)
T PRK15075 98 SGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLN 177 (434)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999874 688999999999999999999999999999999999999998888888888777765
Q ss_pred -------ccccCeEEEeecC------------CCcccccccccCccccccc-ccc-hhhHHHH-HHHHH-HHHHHhhhhh
Q psy10222 437 -------TVRHLGLVMALVG------------PLPQRSYLHLGNRLFSFSY-LTG-YCLFQLL-AAAGP-IFATLGSGMT 493 (1693)
Q Consensus 437 -------~~~~gWr~~f~i~------------~~p~~~~~~~~~~~~~~~~-~~~-~~~~~~~-~~~~~-~~~~~~~~~~ 493 (1693)
.+.+|||++|++. ..|+.+....+.++.+.+. ... .+.++.. ..... ..........
T Consensus 178 ~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (434)
T PRK15075 178 QWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHRPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLI 257 (434)
T ss_pred HhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999998875 1111110000000000011 000 0111111 11111 1111111122
Q ss_pred hhhhhhcccc-cccCCC---CcccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHH-HH---hcchHHHHHHH
Q psy10222 494 SGFSAVLLPQ-LESANS---TIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVI-MS---MATEVWLICVG 565 (1693)
Q Consensus 494 ~~~~~~~l~~-~~~~~~---~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~-~~---~~~~~~~l~~~ 565 (1693)
..+.+.++.+ .+.+.. ........+.+++++++|+++||+|||+.+..+..+..+.... .. ..++.....+.
T Consensus 258 ~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (434)
T PRK15075 258 TVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAV 337 (434)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 2333333322 111111 1122334567788999999999999999877665443322211 11 12344444455
Q ss_pred HHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHH-HHHHHHHHHHHHHhhhhh
Q psy10222 566 RFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIV-SLAISSGIFISHLLGTFL 618 (1693)
Q Consensus 566 r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~-~~~~~lG~~~~~~~~~~~ 618 (1693)
.++.|++.+...+....+..|..|++.||...++. ++...++..++|.+.+.+
T Consensus 338 ~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i 391 (434)
T PRK15075 338 ELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL 391 (434)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence 56667777766666778999999999999998885 444444455666655443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-21 Score=240.28 Aligned_cols=337 Identities=26% Similarity=0.307 Sum_probs=267.0
Q ss_pred HHHhhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHH
Q psy10222 293 MGDFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIIS 372 (1693)
Q Consensus 293 ~~~~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~ 372 (1693)
......+..........|.+.++ ++.+..+.++..+.+.++..+++++.|++.||+|||+.+..+.++.+++.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~ 82 (352)
T cd06174 6 LGFFLSGLDRGLLSPALPLLAED---LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA 82 (352)
T ss_pred HHHHHHHHhhhhhHhhHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence 34455666666677778887777 799999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecCCCc
Q psy10222 373 SATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVGPLP 452 (1693)
Q Consensus 373 ~a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~~~p 452 (1693)
++++++.+++.|+++|++.+...+...+++.|++|+|||++++|+...+..+|..++|.+++++.+..+||+.|++....
T Consensus 83 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (352)
T cd06174 83 FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAIL 162 (352)
T ss_pred HhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888765211
Q ss_pred ccccccccCcccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhhccccc-ccCC---CCcccccchhHHHHHHHHHH
Q psy10222 453 QRSYLHLGNRLFSFSYLTGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQL-ESAN---STIPITPEDGSWIACVLSCI 528 (1693)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~---~~~~~~~~~g~~iG~~~~G~ 528 (1693)
........... . +..+..................+.+.+..+. +.++ .........+..++.++.|+
T Consensus 163 ~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 233 (352)
T cd06174 163 GLLLALLLLFL-L--------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233 (352)
T ss_pred HHHHHHHHHHH-H--------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10000000000 0 1111111222222222222222222222221 1111 11233445677889999999
Q ss_pred hhhhhchhH-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHH
Q psy10222 529 LMDLYGRRF-TNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSG 607 (1693)
Q Consensus 529 lsDr~GRk~-~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG 607 (1693)
+.||+|||+ .+..+..+..++.+...+.++.+.+.+..++.|++.+...+...+++.|..|+++|++..++.+....+|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (352)
T cd06174 234 LSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLG 313 (352)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999998888888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHhhcc
Q psy10222 608 IFISHLLGTFL----HWKTASAVCALFPFISCIFVYST 641 (1693)
Q Consensus 608 ~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~~~l 641 (1693)
..+++.+.+.. +|+..+.+.++..++..+...++
T Consensus 314 ~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 314 GALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred HHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHheec
Confidence 99999887755 79999999988888877665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=232.94 Aligned_cols=351 Identities=13% Similarity=0.101 Sum_probs=239.0
Q ss_pred hhhhhhhhhhhhhh-hhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhhh
Q psy10222 1244 AGSAGAYSAVLLPQ-LESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATE 1322 (1693)
Q Consensus 1244 ~~~~~~~~~~~lp~-i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~~ 1322 (1693)
.........+.+|. ++ ++++.++.+.+++.+.+.++..+.++++|+++||+|||+++..+.++..++.+++++++|
T Consensus 22 ~~~~~~~~~~~~~~~~~---~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~ 98 (400)
T PRK11646 22 VVLGFFVVFPLISIRFV---DQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHE 98 (400)
T ss_pred HHHHHHHHHHHHHHHHH---HHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333444444443 34 378999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc---hhHHHHHHhHHHHHHHH
Q psy10222 1323 VWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL---HWKTTSAVCALFPCASF 1399 (1693)
Q Consensus 1323 ~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l---~WR~~f~i~~i~~~v~l 1399 (1693)
++.+.+.|+++|++.+...+...+++.|++|+++|+++.++......+|..+||.+++.+ +||+.|++.+...++..
T Consensus 99 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~ 178 (400)
T PRK11646 99 PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAA 178 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999988899999999999999999999999999999999999999888 99999999887766654
Q ss_pred HHh-ccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHH
Q psy10222 1400 IFA-YFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKP 1478 (1693)
Q Consensus 1400 v~~-~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1478 (1693)
+.. +++||.+. .+ .+ + +.+..+++.++++..+..
T Consensus 179 i~~~~~~~~~~~-----~~---------------~~-~------------------------~~~~~~~~~~~~~~~~~~ 213 (400)
T PRK11646 179 AFNAWLLPAYKL-----ST---------------VR-T------------------------PVREGMTRVLRDKRFVTY 213 (400)
T ss_pred HHHHHhCCcccc-----cc---------------cc-h------------------------hhHHHHHHHHcCchHHHH
Confidence 433 34565310 00 00 0 000122334444433221
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhh-hhcCChhHHHHHHHHHHHHH
Q psy10222 1479 LAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLL-RIFGRRPLALLSCLGTCLSL 1556 (1693)
Q Consensus 1479 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~-dr~grr~~l~~~~~~~~i~~ 1556 (1693)
...... . +........+.|.+.++.+.+ .+.+......++....+....+++. ||++.++.+..+....+++.
T Consensus 214 ~~~~~~-~----~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 288 (400)
T PRK11646 214 VLTLTG-Y----YMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSM 288 (400)
T ss_pred HHHHHH-H----HHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 111111 1 111122345677777776444 4455555555555555444445555 45665666666665555554
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10222 1557 LGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSI 1636 (1693)
Q Consensus 1557 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~ 1636 (1693)
+.+ . .. ++.+.......+ .........|...++..|..|++.|+++.|+.+....+|..++|.+.+.+.+..
T Consensus 289 ~~l-~---~~---~~~~~~~~~~~l-~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 289 FPI-G---MV---SNLQQLFTLICL-FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred HHH-H---Hh---hhHHHHHHHHHH-HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence 433 1 11 112222222222 223333444566678889999999999999999999999999999999999875
Q ss_pred C----cchhHHHHHHHHHHHHHH
Q psy10222 1637 G----TPETFGLYGCITAFGFVF 1655 (1693)
Q Consensus 1637 g----~~~~f~i~~~~~ll~~v~ 1655 (1693)
+ ...+++..+.+.+++.+.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 361 KALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred hhcCCcchHHHHHHHHHHHHHHH
Confidence 3 234555545555544443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-22 Score=250.47 Aligned_cols=328 Identities=14% Similarity=0.085 Sum_probs=234.7
Q ss_pred hhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHHH-HH
Q psy10222 306 AVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCV-GR 384 (1693)
Q Consensus 306 ~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~-~R 384 (1693)
+...|.+.++ +|.+.++.++..+.+.++..++.++.|++.||+|||++++.+.+++++++++++++++++++++ .|
T Consensus 39 ~~~~~~i~~~---~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (455)
T TIGR00892 39 TVFFKELQQI---FQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAG 115 (455)
T ss_pred hhhHHHHHHH---hCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4457777777 9999999999999999999999999999999999999999999999999999999999999875 57
Q ss_pred HHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC---------------
Q psy10222 385 FLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG--------------- 449 (1693)
Q Consensus 385 ~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~--------------- 449 (1693)
+++|++.|..+++..+++.+|+| ++|++++|+.+++..+|..++|++++++.+.+|||+.|++.
T Consensus 116 ~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~ 194 (455)
T TIGR00892 116 FITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMR 194 (455)
T ss_pred HHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999887888899999996 79999999999999999999999999999999999988764
Q ss_pred CCcccc-ccccc-------C-cccc------c---ccc---cchhhHHHHHHHH-HHHHHHhhhhhhhhhhhcccccccC
Q psy10222 450 PLPQRS-YLHLG-------N-RLFS------F---SYL---TGYCLFQLLAAAG-PIFATLGSGMTSGFSAVLLPQLESA 507 (1693)
Q Consensus 450 ~~p~~~-~~~~~-------~-~~~~------~---~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~ 507 (1693)
..+... ..+.+ . ...+ . .+. ...+.+.+..... ..+..+.......+.+.+..+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s 274 (455)
T TIGR00892 195 PVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVD 274 (455)
T ss_pred CCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCC
Confidence 111100 00000 0 0000 0 000 0011111221111 1111122112222333333222111
Q ss_pred CC---CcccccchhHHHHHHHHHHhhhhh--chhHHHHH--HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHH
Q psy10222 508 NS---TIPITPEDGSWIACVLSCILMDLY--GRRFTNLI--LCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPS 580 (1693)
Q Consensus 508 ~~---~~~~~~~~g~~iG~~~~G~lsDr~--GRk~~l~~--~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 580 (1693)
.. .+......+.+++.++.|+++||. ++|+...+ +.....++.++....++++.+++.+++.|++.+...+..
T Consensus 275 ~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~ 354 (455)
T TIGR00892 275 EYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALL 354 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHH
Confidence 11 112223445667788899999974 33433333 333333444455567788888899999999999999999
Q ss_pred HHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHHHHHHH
Q psy10222 581 IVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL-----HWKTASAVCALFPFISCIF 637 (1693)
Q Consensus 581 ~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~-----~wr~~~~~~~~~~~i~~~~ 637 (1693)
.+++.|..|++++|+..++++...++|..+++.+++.+ +|+..+.+.++..++..+.
T Consensus 355 ~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 355 FEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999887755 5888888887776655543
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=232.51 Aligned_cols=357 Identities=13% Similarity=0.092 Sum_probs=246.9
Q ss_pred hhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhh
Q psy10222 1242 LAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLAT 1321 (1693)
Q Consensus 1242 ~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~ 1321 (1693)
++.........+.+|...+ +++|.++.+.+++.+.+.++..+++++.|+++||+|||++++.+.++..++.++.++++
T Consensus 17 ~~~~~g~~~~~~~l~~~l~--~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~ 94 (395)
T PRK10054 17 LLLTIGRGATLPFMTIYLS--RQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555554332 37899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc---hhHHHHHHhHHHHHHH
Q psy10222 1322 EVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL---HWKTTSAVCALFPCAS 1398 (1693)
Q Consensus 1322 ~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l---~WR~~f~i~~i~~~v~ 1398 (1693)
|++.++++|++.|.+.+...+...++..|..|+++|+++.++.....++|.+++|++++.+ +||..|++.++..++.
T Consensus 95 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~ 174 (395)
T PRK10054 95 NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFP 174 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 9999999999999988888889999999999999999999999999999999999999987 8999999988877766
Q ss_pred HHHh-ccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchH
Q psy10222 1399 FIFA-YFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLK 1477 (1693)
Q Consensus 1399 lv~~-~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1477 (1693)
++.. +++||+++ +++. +.+ +....++.++++..+.
T Consensus 175 ~i~~~~~~~~~~~----~~~~---------------~~~-------------------------~~~~~~~~~~~~~~~~ 210 (395)
T PRK10054 175 LVFIQIWVQRSEK----AIAT---------------ETG-------------------------SVWSPSVLLQDKALLW 210 (395)
T ss_pred HHHHHHHHhcccc----cccc---------------chh-------------------------hhhhhhhhccCceehH
Confidence 5444 33565431 0000 000 0001133455555443
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhHHHHHh---hcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHH
Q psy10222 1478 PLAIILVFFFVQQFSGLNTLIFYTVGISK---EVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTC 1553 (1693)
Q Consensus 1478 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~ 1553 (1693)
......+.... ......+.+.+.. +.+.+ ...+.......+.........+++.||.++|+.+..+....+
T Consensus 211 ~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 285 (395)
T PRK10054 211 FTCSGFLASFV-----SGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFV 285 (395)
T ss_pred HHHHHHHHHHH-----HHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHH
Confidence 33332222221 1111122233322 22333 223344444445555566778899999999998888876666
Q ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1554 LSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLF 1633 (1693)
Q Consensus 1554 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~ 1633 (1693)
++...+ . . .. ++.............+.....|....++.+..|++.|+++.+..+ ..++|..++|.+.+.++
T Consensus 286 ~~~~~~-~---~--~~-~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~ 357 (395)
T PRK10054 286 IGLVGF-I---F--SG-NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVIL 357 (395)
T ss_pred HHHHHH-H---H--cc-hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHH
Confidence 665444 1 1 11 122222222333333344445666678889899999999988765 67799999999999999
Q ss_pred HhcCcchhHHHHHHHHHHHHHHHh
Q psy10222 1634 LSIGTPETFGLYGCITAFGFVFLY 1657 (1693)
Q Consensus 1634 ~~~g~~~~f~i~~~~~ll~~v~~~ 1657 (1693)
+..|+...+++.+....+..++..
T Consensus 358 ~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 358 TTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HHcChhhHHHHHHHHHHHHHHHHH
Confidence 999988777776666655555443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-21 Score=237.56 Aligned_cols=345 Identities=13% Similarity=0.067 Sum_probs=229.6
Q ss_pred HHHhhhhhhhhhHhhhhHH-hhhccccCCcccchhhHHHHHH-HHHHHHHHHHhhhhccccCCchhH-HHHHHHHHHHHH
Q psy10222 293 MGDFSSGTAVGFSAVLLPQ-LQSANSTIPITTEDASWIASMA-ALPMAVACVLGCIAMDSCGRRFSN-LILCIPFVLGWI 369 (1693)
Q Consensus 293 ~~~~~~~l~~~~~~~~~P~-l~~~~~~~~~s~~~~~~~~s~~-~~~~~~~~~~~g~l~d~~Grr~vl-~~~l~~~~~~s~ 369 (1693)
+..+..++........+|. +.++ +|+++++.|+..+.+ ..++..+++..++ .||+||||.+ ..+.++.+++..
T Consensus 22 ~~~~~~~~~~~~~~p~~~~~l~~~---~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~ 97 (393)
T PRK15011 22 IVAFLTGIAGALQTPTLSIFLTDE---VHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACT 97 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHH
Confidence 3444555555544454444 3444 899999999997765 4466666766666 9999999875 566677778888
Q ss_pred HHHhcchhHHHHHHHHHHhhhccccchhhhhhhccccCcccc--hhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEee
Q psy10222 370 IISSATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYR--GAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMAL 447 (1693)
Q Consensus 370 l~~~a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~r--g~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~ 447 (1693)
+.+++++++++++.+.+.|...+...|...+++.|+.|+++| +...|+.+++.++|.++||++++++.+++|||.+|+
T Consensus 98 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~ 177 (393)
T PRK15011 98 LFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYL 177 (393)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHH
Confidence 899999999987665444444456788889999998877665 455689999999999999999999999999998887
Q ss_pred cC-------------CCcccccccccCcccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhhcccc-cccCCCC---
Q psy10222 448 VG-------------PLPQRSYLHLGNRLFSFSYLTGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQ-LESANST--- 510 (1693)
Q Consensus 448 i~-------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~--- 510 (1693)
+. ..|+....+...+ .+.+......+..+..................+.+.++.+ ++.+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~ 256 (393)
T PRK15011 178 SAAVAFIVCGVMVWLFLPSMRKELPLAT-GTLEAPRRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGV 256 (393)
T ss_pred HHHHHHHHHHHHHHhhcCccCCCCcccc-ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 64 1222211110000 0000011111111111111111111122222233333322 1111111
Q ss_pred cccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCc
Q psy10222 511 IPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEP 590 (1693)
Q Consensus 511 ~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~ 590 (1693)
+......+.+++.++.|+++||+|||+.+..+.....+........++.+.+++.+++.+++.|...+..+++..|..|+
T Consensus 257 ~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~ 336 (393)
T PRK15011 257 MMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG 336 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 11122234567789999999999999988776665555544444566777788889888888887777778889999985
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHhhcccC
Q psy10222 591 RYRGAILAIVSLAISSGIFISHLLGTFL----HWKTASAVCALFPFISCIFVYSTPE 643 (1693)
Q Consensus 591 ~~Rg~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~~~lpE 643 (1693)
+||.+.++++...++|..+++.+++.+ +|+.++.+..++.++.++..+++||
T Consensus 337 -~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 337 -QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred -CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 599999999888899999998877765 7999999888888888887777765
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-20 Score=228.23 Aligned_cols=358 Identities=10% Similarity=0.074 Sum_probs=230.6
Q ss_pred HhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHh-HHHHHHHHHHHHHhhhhchhHHHH-HHHHHHHHHHHHHHH
Q psy10222 1241 TLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMA-SLPTFIACILGSFLMEMYGRRLTN-LVLCIPFIMGWVIIS 1318 (1693)
Q Consensus 1241 ~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~-~lg~~ig~l~~G~lsDr~GRr~~l-l~~~~l~~i~~ll~~ 1318 (1693)
.++.+.......+.+|.... ++++.++++.+++.+.+ ..+..+++++.++ +||+|||+.+ ..+.++..++..+.+
T Consensus 24 ~~~~~~~~~~~~p~~~~~l~--~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~ 100 (393)
T PRK15011 24 AFLTGIAGALQTPTLSIFLT--DEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFA 100 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHH
Confidence 45566666666676666432 48999999999998765 5566666666666 9999999875 556666678888888
Q ss_pred hhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcc--hhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhH
Q psy10222 1319 LATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYR--GVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCA 1392 (1693)
Q Consensus 1319 ~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~R--g~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~ 1392 (1693)
++++++.+++.+.+.|...+...+....++.|+.++++| +...++.+.+.++|.+++|++++.+ |||+.|++.+
T Consensus 101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~ 180 (393)
T PRK15011 101 WNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAA 180 (393)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHH
Confidence 999999887665555544567788888888998877666 3455788889999999999999877 9999999998
Q ss_pred HHHHHHHHHh-ccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhc
Q psy10222 1393 LFPCASFIFA-YFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNIL 1471 (1693)
Q Consensus 1393 i~~~v~lv~~-~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1471 (1693)
+..++..+.. +++||.|+- +++ + .+ + .+ . .+ +
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~---~~~--~------------~~---~---------~~----------~-----~~---~ 213 (393)
T PRK15011 181 VAFIVCGVMVWLFLPSMRKE---LPL--A------------TG---T---------LE----------A-----PR---R 213 (393)
T ss_pred HHHHHHHHHHHhhcCccCCC---Ccc--c------------cc---c---------cc----------c-----cc---c
Confidence 8777665554 447887520 000 0 00 0 00 0 00 0
Q ss_pred ccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHH
Q psy10222 1472 CTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSC 1549 (1693)
Q Consensus 1472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~ 1549 (1693)
+++......... .. ..........+.|.+.++ .+.+ .+.+.......++.+++.++.|+++||++||+....+.
T Consensus 214 ~~~~~~~~~~~~---~~-~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~ 289 (393)
T PRK15011 214 NRRDTLLLFVIC---TL-MWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAA 289 (393)
T ss_pred ccccHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 111111111111 11 111233344567766654 4777 45555555556677888999999999999998776655
Q ss_pred HHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1550 LGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTG 1629 (1693)
Q Consensus 1550 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~ 1629 (1693)
....+..... .. . .+.+.......+...... ...+....+..|.+|+ .|+++.++.+...++|..+++.+.
T Consensus 290 ~~~~~~~~~~----~~--~-~~~~~~l~~~~l~~~~~g-~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~ 360 (393)
T PRK15011 290 VAGVCFYAGM----LM--A-HSPAILLGLQLLNAIYIG-ILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLA 360 (393)
T ss_pred HHHHHHHHHH----HH--H-hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHH
Confidence 4444332221 11 1 112222222111111111 1122334566788885 489999999999999999999999
Q ss_pred HHHHHhcCcchhHHHHHHHHHHHHHHHhhhccC
Q psy10222 1630 PLLFLSIGTPETFGLYGCITAFGFVFLYIFLPE 1662 (1693)
Q Consensus 1630 ~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~~~e 1662 (1693)
+.+.+..|++..+.+.+++.+++.+..+ ..||
T Consensus 361 G~i~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 392 (393)
T PRK15011 361 GIVAEIWNYHAVFWFALVMIIATLFCLL-RIKD 392 (393)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH-hhcC
Confidence 9999988998888877777777665554 4444
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-21 Score=240.47 Aligned_cols=317 Identities=23% Similarity=0.249 Sum_probs=233.0
Q ss_pred HHHhhhhhhhhhHhhhhH-HhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHH
Q psy10222 293 MGDFSSGTAVGFSAVLLP-QLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIII 371 (1693)
Q Consensus 293 ~~~~~~~l~~~~~~~~~P-~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~ 371 (1693)
+..+............+| .+.++ +|.+.++.+++.+.+.++..+++++.|++.||+|||+++..+.++.+++.+++
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~ 79 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEE---LGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL 79 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCC---STTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence 345566667777777888 67777 99999999999999999999999999999999999999999999999997887
Q ss_pred HhcchhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC--
Q psy10222 372 SSATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG-- 449 (1693)
Q Consensus 372 ~~a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~-- 449 (1693)
.++++.+.+++.|+++|++.+...+...+++.|++|++||++++|+...+..+|.+++|++++++.+.+|||+.|++.
T Consensus 80 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~ 159 (352)
T PF07690_consen 80 AFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAI 159 (352)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHH
T ss_pred hhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccc
Confidence 787888899999999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred -----------CCccccc---ccccCcc---c--cccc-ccchhhHH-HH-HHHHHHHHHHhhhhhhhhhhhccc-cccc
Q psy10222 450 -----------PLPQRSY---LHLGNRL---F--SFSY-LTGYCLFQ-LL-AAAGPIFATLGSGMTSGFSAVLLP-QLES 506 (1693)
Q Consensus 450 -----------~~p~~~~---~~~~~~~---~--~~~~-~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 506 (1693)
-.+..+. ...+.+. . +... .+...+.. .+ .........+.......+.+.++. .++.
T Consensus 160 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (352)
T PF07690_consen 160 LSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGF 239 (352)
T ss_dssp HHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHC
T ss_pred hhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCC
Confidence 0111110 0000000 0 0001 11111111 11 222222222222223333333322 2222
Q ss_pred C-CCCc---ccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhhhhCChhH
Q psy10222 507 A-NSTI---PITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMA---TEVWLICVGRFLTGLSVGLSSPP 579 (1693)
Q Consensus 507 ~-~~~~---~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~ 579 (1693)
+ .... ......+..+++++.|+++||+|+|+..........+..+..... ++....++..++.|++.+...+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 319 (352)
T PF07690_consen 240 SGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPI 319 (352)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2 0111 122233555668999999999999887777766666665554443 34567777888899999999999
Q ss_pred HHHHHHhccCcchhhHHHHHHHHHHHHHHHHHH
Q psy10222 580 SIVYIAESTEPRYRGAILAIVSLAISSGIFISH 612 (1693)
Q Consensus 580 ~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~ 612 (1693)
..+++.|..|+++||++.++.+...++|..++|
T Consensus 320 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 320 LFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999886
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.5e-22 Score=253.99 Aligned_cols=331 Identities=17% Similarity=0.151 Sum_probs=232.2
Q ss_pred hhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcc
Q psy10222 296 FSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSAT 375 (1693)
Q Consensus 296 ~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~ 375 (1693)
+...+.....+...|.+.++ +|++..+.++..+.+.+++.+++++.|++.||+|||+++..+.++++++++++++++
T Consensus 30 ~~~~~~~~~~~~~~~~i~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 106 (496)
T PRK03893 30 LLDGFDFVLITLVLTEVQGE---FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAP 106 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666778888877 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC------
Q psy10222 376 KVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG------ 449 (1693)
Q Consensus 376 s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~------ 449 (1693)
+++.+++.|+++|++.++.++...+++.|++|+++|++++|+...+..+|..++|.+++++.+.+|||+.|++.
T Consensus 107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~ 186 (496)
T PRK03893 107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIF 186 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred ------CCcccccccccCccc-ccccc----cchhh--HHHHHHH----------------------H------------
Q psy10222 450 ------PLPQRSYLHLGNRLF-SFSYL----TGYCL--FQLLAAA----------------------G------------ 482 (1693)
Q Consensus 450 ------~~p~~~~~~~~~~~~-~~~~~----~~~~~--~~~~~~~----------------------~------------ 482 (1693)
..|+........+.. ..+.. ....+ ....... .
T Consensus 187 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (496)
T PRK03893 187 ALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFM 266 (496)
T ss_pred HHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH
Confidence 112211000000000 00000 00000 0000000 0
Q ss_pred ------------HHHHHHhhhhhhhh-hhhcccccccCC--------CCcccccchhHHHHHHHHHHhhhhhchhHHHHH
Q psy10222 483 ------------PIFATLGSGMTSGF-SAVLLPQLESAN--------STIPITPEDGSWIACVLSCILMDLYGRRFTNLI 541 (1693)
Q Consensus 483 ------------~~~~~~~~~~~~~~-~~~~l~~~~~~~--------~~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~ 541 (1693)
.............+ ...++|.+..++ ..+......+.++|+++.|+++||+|||+.+..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~ 346 (496)
T PRK03893 267 VQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVC 346 (496)
T ss_pred HHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 00000000000000 111223322111 112233445778899999999999999998887
Q ss_pred HHHHHHHHHHHHHhc--chHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh-
Q psy10222 542 LCVPFVLGWVIMSMA--TEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL- 618 (1693)
Q Consensus 542 ~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~- 618 (1693)
+..+..++.+..... .+.+.+.+..++.++...+..+..++++.|..|++.||+..++.+....+|..+++.+.+.+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~ 426 (496)
T PRK03893 347 SLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIA 426 (496)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHh
Confidence 776665554433332 33344444555544444445667788999999999999999999999999999999887765
Q ss_pred ---hhHHHHHHhHH
Q psy10222 619 ---HWKTASAVCAL 629 (1693)
Q Consensus 619 ---~wr~~~~~~~~ 629 (1693)
+|+..+...+.
T Consensus 427 ~~~g~~~~~~~~~~ 440 (496)
T PRK03893 427 QRLDLGTALASLSF 440 (496)
T ss_pred ccCChHHHHHHHHH
Confidence 67776654443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.3e-20 Score=226.76 Aligned_cols=387 Identities=13% Similarity=0.143 Sum_probs=229.4
Q ss_pred HHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHH
Q psy10222 1233 AAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIM 1312 (1693)
Q Consensus 1233 ~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i 1312 (1693)
.+...++............+.+++.+.. |++- ++...|+.+.+.++.+++.++.|.++|.||||..++.+.++..+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~a~~l~~I~~---diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vv 120 (599)
T PF06609_consen 45 SFAAFSLAVIAAYFVLVLPASILPYINA---DIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVV 120 (599)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHH---hcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHh
Confidence 3333444444344444445666787775 6764 46788999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHH
Q psy10222 1313 GWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTS 1388 (1693)
Q Consensus 1313 ~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f 1388 (1693)
|+++++-++|...++++-.+.|+|.|.... ....++|..|.|.|+...++...........++.++..+ +|||.|
T Consensus 121 G~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~ 199 (599)
T PF06609_consen 121 GSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIF 199 (599)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHH
Confidence 999999999999999999999999877764 556689999999999887776665555444566666554 899999
Q ss_pred HHhHHHHHHHHHHhcc--ccCChHHHHhcC-CHHHHHHHHHHHh------------------CCC--Cch-HHHHHHHHH
Q psy10222 1389 AVCALFPCASFIFAYF--TPESPPWLASKG-FTVQAQQAFYWLR------------------GHT--AES-EFEFKSMLN 1444 (1693)
Q Consensus 1389 ~i~~i~~~v~lv~~~~--lpEsp~~l~~~~-~~~~a~~~l~~~~------------------~~~--~~~-~~~~~~~~~ 1444 (1693)
++..+...+.+++.++ .|.+.+-+..++ ...+..+.++.+. +.. +-+ ...+.-+..
T Consensus 200 ~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lvi 279 (599)
T PF06609_consen 200 YIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVI 279 (599)
T ss_pred HHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHH
Confidence 9999987776654433 444322111111 1111111122110 000 000 000000000
Q ss_pred Hhh-hhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC----chhHHHH
Q psy10222 1445 HAE-RSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD----VNEYTAT 1518 (1693)
Q Consensus 1445 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s----~~~~~~~ 1518 (1693)
-.. -...-..|.....+++.-..+++++++ .......+.+.... .++...++-|+.... .+.+ .+.+...
T Consensus 280 G~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r---~~~~~lvi~fi~G~-~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s 355 (599)
T PF06609_consen 280 GFVLLVAFVVWEWFGAPKDPLFPHRLFKDRR---GFAALLVISFISGM-NFFSVNILWPQQVVNVFGSDPISITEIGWIS 355 (599)
T ss_pred HHHHHHHHHHhhhhccCCCCcCCHHHhccch---HHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccCCCcccceeehhh
Confidence 000 000000000000112223344555432 22222222222222 234444444444332 2333 2456777
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCChhHH-HHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhh
Q psy10222 1519 IVIDIVRVVMAFVTCGLLRIFGRRPLA-LLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMM 1597 (1693)
Q Consensus 1519 ~~~~i~~~ig~~~~g~l~dr~grr~~l-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1597 (1693)
.+.+++...+..+.+.+..|++|-|.. +++...+.+++..+ .....++.+.. +.+..+ .+++.........+.
T Consensus 356 ~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gam----a~~~~~n~~~~-i~~~~l-~g~giG~~~~~~~~~ 429 (599)
T PF06609_consen 356 SPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAM----AAVRPDNKNAA-IAFLVL-AGFGIGGILVPAIVI 429 (599)
T ss_pred hhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH----HHccCCCcchH-HHHHHH-HHHhHHHHHHHHHHe
Confidence 788888889999999999988875544 45555554433333 22222222222 222222 222222222333445
Q ss_pred ccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1598 IGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFL 1634 (1693)
Q Consensus 1598 ~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~ 1634 (1693)
++-..|++..+++.|+...++.+|+.++..+...++.
T Consensus 430 ~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~ 466 (599)
T PF06609_consen 430 AQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFT 466 (599)
T ss_pred eEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5667789999999999999999999999988866553
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-20 Score=227.99 Aligned_cols=351 Identities=12% Similarity=0.046 Sum_probs=246.6
Q ss_pred HHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHH
Q psy10222 1235 GGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGW 1314 (1693)
Q Consensus 1235 ~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ 1314 (1693)
..++...+..++..+..++.+|.+++ ++|.++.+.+++.+.+.++..+++++.|++.||+|||+++..+.+++.++.
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~---~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQ---AFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 34555667788888999999999985 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHh---hhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc---------
Q psy10222 1315 VIISL---ATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL--------- 1382 (1693)
Q Consensus 1315 ll~~~---a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l--------- 1382 (1693)
++... .+|++.+++.|++.|+|.|...+....++.|..|+++|++.+++.+...++|..++|.++..+
T Consensus 83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~ 162 (410)
T TIGR00885 83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS 162 (410)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence 88654 468999999999999999999999999999999999999999999999999999998876644
Q ss_pred ---------------------hhHHHHHHhHHHHHHHHHHhcc--ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHH
Q psy10222 1383 ---------------------HWKTTSAVCALFPCASFIFAYF--TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEF 1439 (1693)
Q Consensus 1383 ---------------------~WR~~f~i~~i~~~v~lv~~~~--lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~ 1439 (1693)
+||++|++.+.+.++..+...+ +||.++ + + ++ +
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~---~------------~~-~--- 218 (410)
T TIGR00885 163 QDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----S---D------------AK-Q--- 218 (410)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----c---c------------cc-c---
Confidence 4999999888877665544433 444211 0 0 00 0
Q ss_pred HHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcC--CC-chhHH
Q psy10222 1440 KSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVS--PD-VNEYT 1516 (1693)
Q Consensus 1440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g--~s-~~~~~ 1516 (1693)
.......++.+++++++.. ....+++. ........+.+.+.++.+ .+ ..+..
T Consensus 219 --------------------~~~~~~~~~~~~~~~~~~~-~l~~f~yv----g~e~~~~s~l~~y~~~~~~~~~~~~a~~ 273 (410)
T TIGR00885 219 --------------------ISFSASLSRLARIRHYREG-VIAQFFYV----GVQIMCWTFIIQYAVRLIPGMTAGFAAN 273 (410)
T ss_pred --------------------ccchhhHHHHHhChhHHHH-HHHHHHHH----HHHHHHHHHHHHHHhhccCCCCHHHHHH
Confidence 0000011233444433321 22222222 222334455666665543 22 22222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchh
Q psy10222 1517 ATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWM 1596 (1693)
Q Consensus 1517 ~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1596 (1693)
.......+..+|.++++++.||+++|+.+.++....++..+.. .. ..+ ........+.. ++....+|..+.
T Consensus 274 ~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~-----~~--~~~-~~~~~~l~~~g-lf~s~~fp~i~s 344 (410)
T TIGR00885 274 YNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGS-----IF--AGG-HVGLYCLTLCS-AFMSLMFPTIYG 344 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-----HH--cCC-hHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3333346678899999999999999998888777777666555 11 111 12222333333 444445588888
Q ss_pred hccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CcchhHHHHHHH
Q psy10222 1597 MIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSI------GTPETFGLYGCI 1648 (1693)
Q Consensus 1597 ~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~------g~~~~f~i~~~~ 1648 (1693)
...+..+++.+..+.++.... +|+.+.|.+.+.+.|.. +.+.+|.+...+
T Consensus 345 l~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~ 400 (410)
T TIGR00885 345 IALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC 400 (410)
T ss_pred HHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence 888888877655555555544 99999999999999953 366666654333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-21 Score=240.40 Aligned_cols=314 Identities=14% Similarity=0.010 Sum_probs=224.0
Q ss_pred hhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHH
Q psy10222 301 AVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLL 380 (1693)
Q Consensus 301 ~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~l 380 (1693)
+.......+|.+.++ ++.+..+.++..+.+.+++.+++++.|+++||+||||++..+.+++++++++++++++++.+
T Consensus 28 ~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l 104 (406)
T PRK15402 28 ANDMIQPGMLAVVED---FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQF 104 (406)
T ss_pred hhhhHhcchHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 334344455666666 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC-----------
Q psy10222 381 CVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG----------- 449 (1693)
Q Consensus 381 l~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~----------- 449 (1693)
++.|+++|++.+...+...+.+.|++|+++|++++|+...+..+|..+||++++++.+..|||+.|++.
T Consensus 105 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~ 184 (406)
T PRK15402 105 TLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGL 184 (406)
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence 999999999999989999999999999999999999999999999999999999999999999988764
Q ss_pred --CCcccccccccCcc-ccc--ccccchhhHHHHHHHHH-HHHHHhhhhhhhhhhhcccc-cccCCCC---cccccchhH
Q psy10222 450 --PLPQRSYLHLGNRL-FSF--SYLTGYCLFQLLAAAGP-IFATLGSGMTSGFSAVLLPQ-LESANST---IPITPEDGS 519 (1693)
Q Consensus 450 --~~p~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~-~~~~~~~---~~~~~~~g~ 519 (1693)
..|+.+....++.. .+. ......+.+.+...... .+..........+.+.++.+ ++.+... .......+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~ 264 (406)
T PRK15402 185 WRAMPETAGRVGEKLSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGAL 264 (406)
T ss_pred HHhCCCCCccccccccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 11221110000000 000 00000111112111111 11111111111112222211 1111111 112233467
Q ss_pred HHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhh
Q psy10222 520 WIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMA-----TEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRG 594 (1693)
Q Consensus 520 ~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg 594 (1693)
.+|+++.|+++||+|||+.+..+.++..++..+.... ++.+.+++..++.|++.+...+........ .++++||
T Consensus 265 ~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g 343 (406)
T PRK15402 265 IAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKG 343 (406)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hcccccc
Confidence 7889999999999999999888887777666655442 356667788888999988777766665544 4558999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q psy10222 595 AILAIVSLAISSGIFISHLLGTFL 618 (1693)
Q Consensus 595 ~~~~~~~~~~~lG~~~~~~~~~~~ 618 (1693)
+..+..++...+|..+++.+.+.+
T Consensus 344 ~~~~~~~~~~~~~~~~g~~~~~~l 367 (406)
T PRK15402 344 TVSAAMGMLSMLIFTVGIELSKHA 367 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998887765
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-20 Score=229.47 Aligned_cols=339 Identities=14% Similarity=0.095 Sum_probs=223.5
Q ss_pred HHHhHhhhhhhhhhhhhhhhh-hhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHH
Q psy10222 1237 PLTATLAAGSAGAYSAVLLPQ-LESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWV 1315 (1693)
Q Consensus 1237 ~~l~~~~~~~~~~~~~~~lp~-i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~l 1315 (1693)
.+++.+....+....++.+|. +++ ++|.|+.+.+++.+++.++..++++++|+++||+|||++++.+.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 6 SWFGFFLSFSVWFAFSPLAVQMIKD---DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred HHHHHHHHHHHHHHhHHhhhHHHHH---HhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 344455566667777888885 764 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhh-hHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc------------
Q psy10222 1316 IISLAT-EVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL------------ 1382 (1693)
Q Consensus 1316 l~~~a~-~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l------------ 1382 (1693)
++++++ |++.+++.|+++|++.+ ..+....+++|++|+++|+++.++......+|..+++.++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~ 161 (366)
T TIGR00886 83 WAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA 161 (366)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999 99999999999999955 4567888999999999999999998866666666555444322
Q ss_pred --hhHHHHH-HhHHHHHHHHH-HhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhh
Q psy10222 1383 --HWKTTSA-VCALFPCASFI-FAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMT 1458 (1693)
Q Consensus 1383 --~WR~~f~-i~~i~~~v~lv-~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1458 (1693)
+||+.|+ ..++...+..+ ...+.+|+|+. +. ++.+. +..+ . .. ..
T Consensus 162 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~-----~~~~-~-~~----------~~--------- 210 (366)
T TIGR00886 162 HLAWGWAFVIVPAGILLLPALLIFFVGADTPPG---KP--ATGKL-----SFKG-A-RW----------SV--------- 210 (366)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhcccCCcc---cc--cchhc-----cccc-c-cc----------cc---------
Confidence 6999994 44544444333 33446776531 00 00000 0000 0 00 00
Q ss_pred hhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHHhh
Q psy10222 1459 DKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVMAFVTCGLL 1536 (1693)
Q Consensus 1459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~ 1536 (1693)
.++.....++.+++++.+...+. .............+.|.++++ .|.+ .+.+.......+..+++.++.+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 285 (366)
T TIGR00886 211 GTGALGDQLKVFRDRHTWILALL-----YSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAIS 285 (366)
T ss_pred cchhHHHHHHHHhccchhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHH
Confidence 00011123445555543322111 112222334555667777765 4777 5666667777888899999999999
Q ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccC-chHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHH
Q psy10222 1537 RIFGRRPLALLSCLGTCLSLLGVASILKFMQGLL-PSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGIST 1615 (1693)
Q Consensus 1537 dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~ 1615 (1693)
||+|||+....+....+.+...+ . ...... +.+.......+.....+ ...+..+.+.+|..| +.++++.|+.+
T Consensus 286 ~r~g~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~-~~~g~~~g~~~ 359 (366)
T TIGR00886 286 DRLGGARKLLMSFLGVAMGAFLV-V---LGLVSPLSLAVFIVLFVALFFFSG-AGNGSTFALVPHIFR-RATGAVSGLVG 359 (366)
T ss_pred HhhccchhHHHHHHHHHHHHHHH-H---hcCCCcchHHHHHHHHHHHHHHhc-cccchhhhcchhhch-hhcccHHHHHH
Confidence 99999887776665555544433 1 111111 22222222222222222 233446677788887 68899999998
Q ss_pred HHHHHH
Q psy10222 1616 CFAFLT 1621 (1693)
Q Consensus 1616 ~~~~lg 1621 (1693)
..+++|
T Consensus 360 ~~~~~g 365 (366)
T TIGR00886 360 AIGNLG 365 (366)
T ss_pred HhccCC
Confidence 887765
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-21 Score=235.30 Aligned_cols=316 Identities=12% Similarity=-0.030 Sum_probs=220.2
Q ss_pred HhhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhc
Q psy10222 295 DFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSA 374 (1693)
Q Consensus 295 ~~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a 374 (1693)
.+...+.........|.+..+ ++.++.+.+|+.+.+.+.+++.+++.|+++||+||||+++.+.+++++++++++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~ 88 (393)
T PRK11195 12 QFFSALADNALLFAAIALLKE---LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG 88 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH
Confidence 334444334444555555555 88899999999999999999999999999999999999999999999999999888
Q ss_pred chhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC-----
Q psy10222 375 TKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG----- 449 (1693)
Q Consensus 375 ~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~----- 449 (1693)
++. ++.|+++|++.|...|+..+++.|++|+|||++++|+.++...+|.++||+++|++.+. .|+..+.+.
T Consensus 89 ~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~ 164 (393)
T PRK11195 89 IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL 164 (393)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 774 78999999999999999999999999999999999999999999999999999999875 477555443
Q ss_pred -------CCcccccccccCcccc---ccc-----ccchhhHHHHH-HHHHHHHHHhhhhhhhhhhhccccccc-CCC---
Q psy10222 450 -------PLPQRSYLHLGNRLFS---FSY-----LTGYCLFQLLA-AAGPIFATLGSGMTSGFSAVLLPQLES-ANS--- 509 (1693)
Q Consensus 450 -------~~p~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~--- 509 (1693)
..|+.+....+.+... .+. ....+.+.... .....+..............+.++..+ +..
T Consensus 165 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G 244 (393)
T PRK11195 165 LAALFNLFIPRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPA 244 (393)
T ss_pred HHHHHHhcCCCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHH
Confidence 1222111000000000 000 00001111111 111111111111111122223333221 111
Q ss_pred CcccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccC
Q psy10222 510 TIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTE 589 (1693)
Q Consensus 510 ~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p 589 (1693)
.+......|.++|+++.+++.||.++|+.+..+.. ..+..+...+.++++...+..++.|++.+...++..+.+.|..|
T Consensus 245 ~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~ 323 (393)
T PRK11195 245 YLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGH 323 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCc
Confidence 12334456888999999999999998887777653 33444444556677777788889999999888888899999877
Q ss_pred cch-hhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10222 590 PRY-RGAILAIVSLAISSGIFISHLLGTFL 618 (1693)
Q Consensus 590 ~~~-Rg~~~~~~~~~~~lG~~~~~~~~~~~ 618 (1693)
++. +|++.++.++..++|..++..+....
T Consensus 324 ~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 324 VLVGAGHSIAVQNFNENLAMLLMLGLYSLL 353 (393)
T ss_pred ccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 665 79999999999999999888776654
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.3e-20 Score=226.60 Aligned_cols=325 Identities=16% Similarity=0.144 Sum_probs=230.5
Q ss_pred hhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy10222 1249 AYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILA 1328 (1693)
Q Consensus 1249 ~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~~~~~lli 1328 (1693)
....+.+|.+++ |+|.|.++.+++.+++.++..+++++.|+++||+|||+++..+.++..++.+.+ .+++.+.+++
T Consensus 17 ~~~~~~lp~l~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 92 (355)
T TIGR00896 17 TSVGPLLPQIRS---ALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFA 92 (355)
T ss_pred ccCcccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHH
Confidence 556788999985 899999999999999999999999999999999999999999999999888888 7899999999
Q ss_pred HHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc------hhHHHHHHhHHHHHHHHHHh
Q psy10222 1329 GRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL------HWKTTSAVCALFPCASFIFA 1402 (1693)
Q Consensus 1329 ~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l------~WR~~f~i~~i~~~v~lv~~ 1402 (1693)
.|+++|++.+...+....++.|++| ++|+++.++.+...++|..+++.+++.+ +||+.|.+.+...++...
T Consensus 93 ~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~-- 169 (355)
T TIGR00896 93 GTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL-- 169 (355)
T ss_pred HHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--
Confidence 9999999999988888889999986 6899999999999999999998887665 399998877655443322
Q ss_pred ccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHH
Q psy10222 1403 YFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAII 1482 (1693)
Q Consensus 1403 ~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1482 (1693)
.++||+++ +.+ .+ + ...+...++.++++..+...
T Consensus 170 ~~~~~~~~----~~~-------------~~-~-------------------------~~~~~~~~~~~~~~~~~~~~--- 203 (355)
T TIGR00896 170 AWIPQVRR----RVA-------------AN-Q-------------------------TTTRLTPVRIWRSPLAWQVT--- 203 (355)
T ss_pred HHhhhhcc----ccC-------------CC-C-------------------------CCCCCCCchhhcCHhHHHHH---
Confidence 23454421 000 00 0 00001123344443322111
Q ss_pred HHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhc-CChhHHHHHHHHHHHHHHHHH
Q psy10222 1483 LVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIF-GRRPLALLSCLGTCLSLLGVA 1560 (1693)
Q Consensus 1483 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~-grr~~l~~~~~~~~i~~~~~~ 1560 (1693)
...+.....++....+.|.++++.|.+ .+.+.......++.+++.++.+++.||+ +||+....+....+++.+.+
T Consensus 204 --~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~- 280 (355)
T TIGR00896 204 --VFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGL- 280 (355)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH-
Confidence 111222223455667788888877887 6677788888999999999999999999 45666666666666555444
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhcc-ccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy10222 1561 SILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIG-ELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIG 1637 (1693)
Q Consensus 1561 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~g 1637 (1693)
. .. .. +.... .. ...+++.....+....... +..+++.++...++.+....+++.++|.+.+.+.+..|
T Consensus 281 ~---~~-~~--~~~~~-~~-~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 281 L---FA-PM--HGLWA-WA-LVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred H---Hh-hh--hHHHH-HH-HHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 11 11 11111 11 2222333333444444444 34445677889999999999999999999999998876
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=235.32 Aligned_cols=315 Identities=17% Similarity=0.114 Sum_probs=229.9
Q ss_pred hhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHH
Q psy10222 300 TAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWL 379 (1693)
Q Consensus 300 l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ 379 (1693)
......+...|.+.++ +|.+..+.+++.+.+.++..++.++.|++.||+|||+++..+.++.+++.++++++++++.
T Consensus 31 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (398)
T TIGR00895 31 YDLAAMGFAAPAISAE---WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQ 107 (398)
T ss_pred HHHHHHHhhHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHH
Confidence 3344455677888777 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC----------
Q psy10222 380 LCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG---------- 449 (1693)
Q Consensus 380 ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~---------- 449 (1693)
+++.|+++|++.+..++...+++.|++|+++|++++|+...+..+|..++|.+++++.+.+|||..|++.
T Consensus 108 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 187 (398)
T TIGR00895 108 LLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLL 187 (398)
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred ---CCccccc---cc-c----------------------cCcccccccccc-----hh---hHHHH-HHHHHHHHHHhhh
Q psy10222 450 ---PLPQRSY---LH-L----------------------GNRLFSFSYLTG-----YC---LFQLL-AAAGPIFATLGSG 491 (1693)
Q Consensus 450 ---~~p~~~~---~~-~----------------------~~~~~~~~~~~~-----~~---~~~~~-~~~~~~~~~~~~~ 491 (1693)
..|+... .. . ..........+. .. .+... ......+......
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (398)
T TIGR00895 188 LMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVY 267 (398)
T ss_pred HHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 1111100 00 0 000000000000 00 01111 1111111111112
Q ss_pred hhhhhhhhcccccccCCC---CcccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Q psy10222 492 MTSGFSAVLLPQLESANS---TIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFL 568 (1693)
Q Consensus 492 ~~~~~~~~~l~~~~~~~~---~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 568 (1693)
....+.+.+..+...+.. .+......+.++|+++.|+++||+|||+......+..+...++.....+.+.+.+..++
T Consensus 268 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (398)
T TIGR00895 268 FLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAI 347 (398)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 222222222222211111 12233455778999999999999999955444443333333333335567777888899
Q ss_pred HHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy10222 569 TGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTF 617 (1693)
Q Consensus 569 ~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~ 617 (1693)
.|++.+...+...+++.|..|+++||++.++.+....+|..+++.+.+.
T Consensus 348 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 348 AGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 9999999999999999999999999999999999999999999988764
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-19 Score=223.47 Aligned_cols=367 Identities=11% Similarity=0.026 Sum_probs=242.5
Q ss_pred hhhhhhhhhh-hhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchh-HHHHHHHHHHHHHHHHHHHh
Q psy10222 1242 LAAGSAGAYS-AVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGR-RLTNLVLCIPFIMGWVIISL 1319 (1693)
Q Consensus 1242 ~~~~~~~~~~-~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GR-r~~ll~~~~l~~i~~ll~~~ 1319 (1693)
+.+....++. ++..+.+.+ ++|.+..+.+++.+++.++..++++++|.++||+|| |+++.++.++..++..+..+
T Consensus 12 ~~~~~~~~~~~~~l~~~l~~---~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~ 88 (418)
T TIGR00889 12 FLQWFIWGSWLVTLGSYMSK---TLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ 88 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444 444455553 789999999999999999999999999999999965 88999999999899999999
Q ss_pred hhhHHHHHHHHHHHhhhhhchhhhHhHHh----h----hccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHH
Q psy10222 1320 ATEVWVILAGRFLTGFALGLSSPVALVYI----A----ETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTT 1387 (1693)
Q Consensus 1320 a~~~~~lli~R~l~Gig~g~~~~~~~~~i----~----e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~ 1387 (1693)
.+|++.+.+.|++.|++.+...+...+.. . |......|.+..| .+|.+++|++++.+ .|+ +
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~ 161 (418)
T TIGR00889 89 VTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-Q 161 (418)
T ss_pred hcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-H
Confidence 99999999999999998777766655443 2 3344345555555 35677777776655 354 4
Q ss_pred HHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhh
Q psy10222 1388 SAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWK 1467 (1693)
Q Consensus 1388 f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1467 (1693)
|++.++..++..+..+++||+|+- +++. +.+ . .+..+...+
T Consensus 162 f~~~~~~~~~~~~~~~~~~e~~~~---~~~~-------------~~~-~----------------------~~~~~~~~~ 202 (418)
T TIGR00889 162 LYITAGSSALLGVFALTLPDIPVA---KSTA-------------KMS-I----------------------KVMLGLDAF 202 (418)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCC---cccc-------------ccC-H----------------------HHHhhhhHH
Confidence 556666666655555668887630 0000 000 0 000011223
Q ss_pred HhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC---------chhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10222 1468 KNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD---------VNEYTATIVIDIVRVVMAFVTCGLLRI 1538 (1693)
Q Consensus 1468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s---------~~~~~~~~~~~i~~~ig~~~~g~l~dr 1538 (1693)
+.++++.++.-.+..++.... ......+.+.+.++.|.+ ...+.......+..+++.+..+++.||
T Consensus 203 ~~~k~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr 277 (418)
T TIGR00889 203 ILFKNKRMAIFFFFSMLLGAP-----LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR 277 (418)
T ss_pred HHhcCCCeeeHHHHHHHHHhH-----HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666544333332222221 112223445555554433 234666666777888889999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHH-HH
Q psy10222 1539 FGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGIST-CF 1617 (1693)
Q Consensus 1539 ~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~-~~ 1617 (1693)
+|||+++..+.+..++....+ . ................+..+.......+....+++|.+|++.|+++.|+.+ ..
T Consensus 278 ~g~r~~l~~~~~~~~v~~~l~-~---~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~ 353 (418)
T TIGR00889 278 FGIKKVMLLSLVAWALRFGFF-A---YGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMC 353 (418)
T ss_pred hCcHHHHHHHHHHHHHHHHHH-H---HcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 999999999888777765444 1 111111111222222222222222334555677899999999999999997 56
Q ss_pred HHHHHHHHHHHHHHHHHhc------CcchhHHHHHHHHHHHHHHHhhhccCCCCC
Q psy10222 1618 AFLTLFVVVKTGPLLFLSI------GTPETFGLYGCITAFGFVFLYIFLPETKNK 1666 (1693)
Q Consensus 1618 ~~lg~~i~~~~~~~l~~~~------g~~~~f~i~~~~~ll~~v~~~~~~~et~~~ 1666 (1693)
..+|..++|.+.+.+.+.. ||+..|.+.+++.++++++.+++.+|+++.
T Consensus 354 ~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 354 NGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 7899999999999999874 478888888888888888888888877654
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.8e-21 Score=236.23 Aligned_cols=310 Identities=13% Similarity=0.127 Sum_probs=218.8
Q ss_pred hhhHHhhhc-cccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q psy10222 307 VLLPQLQSA-NSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCVGRF 385 (1693)
Q Consensus 307 ~~~P~l~~~-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~~R~ 385 (1693)
.+.|.++.+ .+++|++..+.|+..+.+.+...+..++.|+++||+|||+++..+.++.+++.++++++++++++++.|+
T Consensus 28 ~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 107 (400)
T PRK11646 28 VVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCI 107 (400)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 344444332 2348999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC-------------CCc
Q psy10222 386 LTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG-------------PLP 452 (1693)
Q Consensus 386 l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~-------------~~p 452 (1693)
++|++.+...|+..+++.|++|+++|++++|+......+|..+||++++++. .+|||+.|++. ..|
T Consensus 108 l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~ 186 (400)
T PRK11646 108 LSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLP 186 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999889999999999999999999999999999999999999999998 78999988765 111
Q ss_pred ccccccccCcccccccccchhhHHHHHHHHHHHH-HHhhhhhhhhhhhcccccccCCCCccc---ccchhHHHHHHHHHH
Q psy10222 453 QRSYLHLGNRLFSFSYLTGYCLFQLLAAAGPIFA-TLGSGMTSGFSAVLLPQLESANSTIPI---TPEDGSWIACVLSCI 528 (1693)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~g~~iG~~~~G~ 528 (1693)
+.+..+. .+..........+.+........... .........+.+.+..+.......... ....+...+....++
T Consensus 187 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 265 (400)
T PRK11646 187 AYKLSTV-RTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIAR 265 (400)
T ss_pred ccccccc-chhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100000 00000000000011111111111111 111111112222222222111111111 112223333444455
Q ss_pred hhh-hhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHH
Q psy10222 529 LMD-LYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSG 607 (1693)
Q Consensus 529 lsD-r~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG 607 (1693)
+.| |++.++.+..+..+..++.++..+.++.+.+.+..++.|++.+...+...+++.|..|+++||+..++.+....+|
T Consensus 266 ~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 345 (400)
T PRK11646 266 WSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALG 345 (400)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHH
Confidence 555 5665666777777777777777777888777777888888888888888999999999999999999999999999
Q ss_pred HHHHHHhhhhh
Q psy10222 608 IFISHLLGTFL 618 (1693)
Q Consensus 608 ~~~~~~~~~~~ 618 (1693)
..+++.+.+.+
T Consensus 346 ~~ig~~l~G~l 356 (400)
T PRK11646 346 GAIGYIGGGWL 356 (400)
T ss_pred HHhcccchHHH
Confidence 99999887765
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-19 Score=221.18 Aligned_cols=354 Identities=11% Similarity=0.035 Sum_probs=246.7
Q ss_pred HhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHH----HHHHHHHHHHH
Q psy10222 1239 TATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTN----LVLCIPFIMGW 1314 (1693)
Q Consensus 1239 l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~l----l~~~~l~~i~~ 1314 (1693)
+..+...+..++..|.+|.+.+ |++.|..+.+++.+++.+...++++++|+++||+|||... ..+..++.+
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~---~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~-- 85 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLK---GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA-- 85 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--
Confidence 4455566667788888888885 7899999999999999999999999999999999985433 222222222
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHH
Q psy10222 1315 VIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAV 1390 (1693)
Q Consensus 1315 ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i 1390 (1693)
..+..+++++.+++.|+++|.+.+...|...++..|+ +++|++..+......++|.+++|++++.+ |||+.|++
T Consensus 86 ~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~ 163 (382)
T TIGR00902 86 AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAI 163 (382)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 3455789999999999999999999999998888765 57899999999999999999999988887 99999988
Q ss_pred hHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhh
Q psy10222 1391 CALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNI 1470 (1693)
Q Consensus 1391 ~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1470 (1693)
.....++.++ ...++|+++ .+++ ++ + ++ .++....++.+
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~---~~~~-~~-------------~-------------~~----------~~~~~~~~~~l 202 (382)
T TIGR00902 164 LTAGLAFMLI-GFLIKPTIP---PKDA-IP-------------E-------------DE----------SQGDSAFIALL 202 (382)
T ss_pred HHHHHHHHHH-HHHcCCCCC---CCcc-cc-------------c-------------cc----------cccchhHHHHH
Confidence 7655333332 223444321 0000 00 0 00 00011234555
Q ss_pred cccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHH
Q psy10222 1471 LCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSC 1549 (1693)
Q Consensus 1471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~ 1549 (1693)
++|+++.-.+.. ++.+ ........+.|.+.++.|.+ ...+.......++.+++..+.+++.||+|+|+++.++.
T Consensus 203 ~~~~~~~~l~~~----~l~~-~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~ 277 (382)
T TIGR00902 203 KNPMNLRFLAAV----CLIQ-GAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISA 277 (382)
T ss_pred cChHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHH
Confidence 655433222222 2111 22344445667777778888 66777777788889999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHH-HHHHHHHHHHHH
Q psy10222 1550 LGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTC-FAFLTLFVVVKT 1628 (1693)
Q Consensus 1550 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~-~~~lg~~i~~~~ 1628 (1693)
....+....+ . . .++.+.......+....+. ...+....++++. |++.|+++.++.+. ...+|..+++.+
T Consensus 278 ~~~~~~~~~~-~---~---~~~~~~~~~~q~l~g~~~~-~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~ 348 (382)
T TIGR00902 278 IACVGRWAII-G---A---IEAFPLIFLLQILHCGTFA-VCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAF 348 (382)
T ss_pred HHHHHHHHHH-H---h---HhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887776555 1 1 1222333333444333333 3344456677787 88899999999864 566899999999
Q ss_pred HHHHHHhcCcchhHHHHHHHHHHHHHH
Q psy10222 1629 GPLLFLSIGTPETFGLYGCITAFGFVF 1655 (1693)
Q Consensus 1629 ~~~l~~~~g~~~~f~i~~~~~ll~~v~ 1655 (1693)
.+.+.+..|. ..|.+.+++.+++.++
T Consensus 349 ~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 349 AGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 9999999886 6677777777765443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-21 Score=240.53 Aligned_cols=343 Identities=14% Similarity=0.038 Sum_probs=244.7
Q ss_pred hhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHh--
Q psy10222 296 FSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISS-- 373 (1693)
Q Consensus 296 ~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~-- 373 (1693)
....+........+|.+.++ ++.++.+.|++.+.+.+++.+++++.|++.||+|||+++..+..+++++.++.+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~---~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~ 103 (417)
T PRK10489 27 FISIFGLGLLGVAVPVQIQM---MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNA 103 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHH
Confidence 34444445556677777666 7788999999999999999999999999999999999999999988888776543
Q ss_pred ---cchhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC-
Q psy10222 374 ---ATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG- 449 (1693)
Q Consensus 374 ---a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~- 449 (1693)
+++++.+++.|+++|++.+...++..+++.|++|+++|+++.|+..++..+|.++||++++++.+..|||+.|++.
T Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~ 183 (417)
T PRK10489 104 FLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAA 183 (417)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHH
Confidence 5688999999999999999888999999999999999999999999999999999999999998889999888764
Q ss_pred -----------CCcccccccccCcccccccc-----cchhhHHHHHHHH-HHHHHHhhhhhhhhhhhcccc-cccCCCC-
Q psy10222 450 -----------PLPQRSYLHLGNRLFSFSYL-----TGYCLFQLLAAAG-PIFATLGSGMTSGFSAVLLPQ-LESANST- 510 (1693)
Q Consensus 450 -----------~~p~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~-~~~~~~~- 510 (1693)
..|+..... +.+....+.. ...+.+....... ........+ ...+.+.+..+ .+.+...
T Consensus 184 ~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~g~~~~~~ 261 (417)
T PRK10489 184 AGTFITLLPLLRLPALPPPP-QPREHPLRSLLAGFRFLLASPVVGGIALLGGLLTMASA-VRVLYPALADEVWQMGAAQI 261 (417)
T ss_pred HHHHHHHHHHHhCCCCCCCC-cccccchHHHHHHHHHHHcChHHHHHHHHHHHHHHHHh-HHHhhHHHHHhccCCChhHh
Confidence 112111100 0000000000 0001111111111 111111111 22222223322 1111111
Q ss_pred --cccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhcc
Q psy10222 511 --IPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAEST 588 (1693)
Q Consensus 511 --~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~ 588 (1693)
+......+.++|.++.|++.||.++++.+..+.++..++.++..+.++.+...++.++.|++.+...+...+++.|..
T Consensus 262 g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 341 (417)
T PRK10489 262 GLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQT 341 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 223344577889999999999988888888887777777777777788887888889999988877777889999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHH-HHHHhhcccC
Q psy10222 589 EPRYRGAILAIVSLAISSGIFISHLLGTFL----HWKTASAVCALFPFI-SCIFVYSTPE 643 (1693)
Q Consensus 589 p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i-~~~~~~~lpE 643 (1693)
|++.||++.++.+....+|..+++.+.+.+ +++..+...+...++ ..+....+||
T Consensus 342 p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (417)
T PRK10489 342 PDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGE 401 (417)
T ss_pred CHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999998887665 556666555544433 3444444454
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=234.00 Aligned_cols=312 Identities=13% Similarity=0.041 Sum_probs=222.6
Q ss_pred hhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHH
Q psy10222 300 TAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWL 379 (1693)
Q Consensus 300 l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ 379 (1693)
+........+|.+.++ +|.++++.++..+.+.++..+++++.|++.||+|||+++..+.++++++.++++++++++.
T Consensus 19 ~~~~~~~~~~p~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (385)
T TIGR00710 19 LGIDMYLPAFPEIAAD---LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIET 95 (385)
T ss_pred HHHHHhcccHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 3444445566777777 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC----------
Q psy10222 380 LCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG---------- 449 (1693)
Q Consensus 380 ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~---------- 449 (1693)
+++.|+++|++.+...+...+++.|++|+++|++++|+.+....+|..++|.+++++.+.+|||++|++.
T Consensus 96 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 175 (385)
T TIGR00710 96 LLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSAL 175 (385)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999888764
Q ss_pred ---CCcccccccccCcccc-ccc-ccchhhHHHHHHHHHH-HHHHhhhhhhhhhhhccc-ccccCCC---CcccccchhH
Q psy10222 450 ---PLPQRSYLHLGNRLFS-FSY-LTGYCLFQLLAAAGPI-FATLGSGMTSGFSAVLLP-QLESANS---TIPITPEDGS 519 (1693)
Q Consensus 450 ---~~p~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~-~~~~~~~---~~~~~~~~g~ 519 (1693)
..|+.+....+.+... .+. ....+.+......... ...........+.+.+.. +.+.+.. .+......+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 255 (385)
T TIGR00710 176 IFFILPETLPYEARIQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAM 255 (385)
T ss_pred HHHhCCCCCCCcccCCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 1111111100000000 000 0001111111111111 111111111111122221 1111111 1222344577
Q ss_pred HHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhh
Q psy10222 520 WIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMA-----TEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRG 594 (1693)
Q Consensus 520 ~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg 594 (1693)
++|+++.|++.||+|||+.+..+..+..++.++..+. ++...+....++.|++.+...+....+..|..| ++||
T Consensus 256 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g 334 (385)
T TIGR00710 256 IFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAG 334 (385)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccch
Confidence 8899999999999999998888877777666555442 234455666778899999889999999999876 6799
Q ss_pred HHHHHHHHHHH-HHHHHHHHhh
Q psy10222 595 AILAIVSLAIS-SGIFISHLLG 615 (1693)
Q Consensus 595 ~~~~~~~~~~~-lG~~~~~~~~ 615 (1693)
++.++.+.... .|...++.++
T Consensus 335 ~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 335 TASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 99998877655 4666666655
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=233.39 Aligned_cols=316 Identities=14% Similarity=0.066 Sum_probs=207.9
Q ss_pred hhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcch
Q psy10222 297 SSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATK 376 (1693)
Q Consensus 297 ~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s 376 (1693)
..++........+|.+.++ ++.+.++.++..+.+++++++++++.|+++||+|||++++.++.+++++++++++++|
T Consensus 27 ~~~~~~~~~~p~l~~i~~~---~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~ 103 (413)
T PRK15403 27 AAYLTTDLIQPGIINVVRD---FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTS 103 (413)
T ss_pred HHHHHHHhhccCHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444455556677777777 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC-------
Q psy10222 377 VWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG------- 449 (1693)
Q Consensus 377 ~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~------- 449 (1693)
+++++++|++||++.+...+...+++.|++|+++|++++|++..+..+|+.+||++++++.+++|||+.|++.
T Consensus 104 ~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~ 183 (413)
T PRK15403 104 MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIA 183 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 9999999999999998878888899999999999999999999999999999999999999999999999764
Q ss_pred ------CCcccccccccCcccccc-----cccchhhHHHHHHHHHHH-HHHhhhhhhhhhhhccccc-ccCCCCc---cc
Q psy10222 450 ------PLPQRSYLHLGNRLFSFS-----YLTGYCLFQLLAAAGPIF-ATLGSGMTSGFSAVLLPQL-ESANSTI---PI 513 (1693)
Q Consensus 450 ------~~p~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~-~~~~~~~---~~ 513 (1693)
..|+.... +++..+.+ .....+.+..+....... ..........+.+.++.+. +.+.... ..
T Consensus 184 ~~~~~~~lp~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~ 261 (413)
T PRK15403 184 FVGLLLAMPETVKR--GAVPFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQV 261 (413)
T ss_pred HHHHHHhCCCCccc--cCCCCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHH
Confidence 12221110 00000000 000011122222111111 1111111111222222221 1111111 11
Q ss_pred ccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHH-----hcchHHHHHHHHHHHHhhhhCChhHHHHHHHhcc
Q psy10222 514 TPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMS-----MATEVWLICVGRFLTGLSVGLSSPPSIVYIAEST 588 (1693)
Q Consensus 514 ~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~-----~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~ 588 (1693)
....+.++++.+.+++.+|.++++.+.....+..++..+.. ..++++..++..++.++|.+...+.......+ .
T Consensus 262 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~-~ 340 (413)
T PRK15403 262 PVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLF-S 340 (413)
T ss_pred HHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHhc-c
Confidence 23446667777777765444443333222222223322222 12334445678888899988888877754432 2
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10222 589 EPRYRGAILAIVSLAISSGIFISHLLGTFL 618 (1693)
Q Consensus 589 p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~ 618 (1693)
.+..+|++.++.+.....+...++...++.
T Consensus 341 ~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~ 370 (413)
T PRK15403 341 NNLPKGTVSASLNMVILMVMAVSVEIGRWL 370 (413)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233478888888887777777766666554
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-20 Score=230.92 Aligned_cols=329 Identities=13% Similarity=0.055 Sum_probs=222.1
Q ss_pred hhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHH---h-cchhHHHHHH
Q psy10222 308 LLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIIS---S-ATKVWLLCVG 383 (1693)
Q Consensus 308 ~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~---~-a~s~~~ll~~ 383 (1693)
.+|.+.++ +|.++++.++..+.+.+++.+++++.|++.||+||||++..+..+++++++++. + .++++.+++.
T Consensus 35 ~~~~~~~~---~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 111 (402)
T TIGR00897 35 WLSPFLKA---LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLF 111 (402)
T ss_pred hHHHHHHH---hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHH
Confidence 44555555 899999999999999999999999999999999999999999999999987663 3 3578899999
Q ss_pred HHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhH-HHHhhhhcccccccC-----eEEEeecC--------
Q psy10222 384 RFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGI-LVSHLLDHLPTVRHL-----GLVMALVG-------- 449 (1693)
Q Consensus 384 R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~-~lgp~lg~~l~~~~g-----Wr~~f~i~-------- 449 (1693)
|+++|+|.+...+...+.+.+++|+||||+++|+.+++.++|. +++|++++++.+.+| |+..+...
T Consensus 112 ~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 191 (402)
T TIGR00897 112 YGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALF 191 (402)
T ss_pred HHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998888888999999999999999999999999997 689999999988889 44433211
Q ss_pred CCcccccccccCccccccccc-----chhhHHHHHH-HHHHHHHHhhhhhhhhhhhcccccccCCCC---cccccchhHH
Q psy10222 450 PLPQRSYLHLGNRLFSFSYLT-----GYCLFQLLAA-AGPIFATLGSGMTSGFSAVLLPQLESANST---IPITPEDGSW 520 (1693)
Q Consensus 450 ~~p~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~g~~ 520 (1693)
..++......++++.+.+... ..+.+..... ....+..........+.+.++.+.+.+... +......+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ 271 (402)
T TIGR00897 192 SNKDIFTPQHMQTREKFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNI 271 (402)
T ss_pred ccCCCCCcccccCCcchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Confidence 011100000000000000000 0111112111 111111111111222333333332211111 1123345778
Q ss_pred HHHHHHHHhhhhhchhHHHH-HHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhh
Q psy10222 521 IACVLSCILMDLYGRRFTNL-ILCVPFVLGWVIMSM-----ATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRG 594 (1693)
Q Consensus 521 iG~~~~G~lsDr~GRk~~l~-~~~~~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg 594 (1693)
+|++..|+++||+|||+.+. .+.+...++.+.... .++.+...+..++.|++.+...+ ......|.. |++||
T Consensus 272 ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g 349 (402)
T TIGR00897 272 VFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKG 349 (402)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhH
Confidence 99999999999999888653 233333332222221 23566677788888988887544 455667764 56899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHhhcc
Q psy10222 595 AILAIVSLAISSGIFISHLLGTFL----HWKTASAVCALFPFISCIFVYST 641 (1693)
Q Consensus 595 ~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~~~l 641 (1693)
++.++.+....+|..++|.+.+.+ +|...+.+.++..++..+...|+
T Consensus 350 ~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 350 AAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999877655 78888888887777766665554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-21 Score=243.19 Aligned_cols=333 Identities=15% Similarity=0.062 Sum_probs=218.3
Q ss_pred HhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHHHHH
Q psy10222 305 SAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCVGR 384 (1693)
Q Consensus 305 ~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~~R 384 (1693)
.....|.+.++ +|++.++.+++.+.+++++.+++++.|++.||+|||+++..+.+++++++++++++++++.+++.|
T Consensus 55 ~~~~~~~l~~~---~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r 131 (476)
T PLN00028 55 AAPLLPIIRDN---LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVR 131 (476)
T ss_pred HHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 44567788877 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccc----c-----ccCeEEEeecC------
Q psy10222 385 FLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPT----V-----RHLGLVMALVG------ 449 (1693)
Q Consensus 385 ~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~----~-----~~gWr~~f~i~------ 449 (1693)
+++|++.+.. +....+++||+|+++||+++|+.+....+|..+++.+.+.+. . ..|||+.|++.
T Consensus 132 ~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~ 210 (476)
T PLN00028 132 FFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHII 210 (476)
T ss_pred HHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHH
Confidence 9999998874 456678999999999999999998766666666555443331 1 35899999875
Q ss_pred ----------CCcccccccccCccc-cc-ccccc----hhhHHHHHHHHHHHHHHh-hhhhhhhhhhcccc-cccCC---
Q psy10222 450 ----------PLPQRSYLHLGNRLF-SF-SYLTG----YCLFQLLAAAGPIFATLG-SGMTSGFSAVLLPQ-LESAN--- 508 (1693)
Q Consensus 450 ----------~~p~~~~~~~~~~~~-~~-~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~-~~~~~--- 508 (1693)
+.|+........+.. .. ..... .+.++.+.........+. ......+.+.++.+ .+.+.
T Consensus 211 ~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a 290 (476)
T PLN00028 211 MGILVLTLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETA 290 (476)
T ss_pred HHHHHHHHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHH
Confidence 111110000000000 00 00000 011111111111111111 11112222222221 11110
Q ss_pred CCcccccchhHHHHHHHHHHhhhhhchhH-------HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHH
Q psy10222 509 STIPITPEDGSWIACVLSCILMDLYGRRF-------TNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSI 581 (1693)
Q Consensus 509 ~~~~~~~~~g~~iG~~~~G~lsDr~GRk~-------~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 581 (1693)
..+......+..+|.+++|+++||+|||+ .......+..+..++.....+.+...+..++.+++.+...+...
T Consensus 291 ~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 370 (476)
T PLN00028 291 GAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATF 370 (476)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhc
Confidence 11223344677889999999999998752 22233333333333334455555556666677777666666666
Q ss_pred HHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHhHHHHHHHHHHhhccc
Q psy10222 582 VYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTF---LHWKTASAVCALFPFISCIFVYSTP 642 (1693)
Q Consensus 582 ~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~---~~wr~~~~~~~~~~~i~~~~~~~lp 642 (1693)
++..|..| ++||...++.+....+|..+++.+... .+|+..+.+.++..+++.+..++++
T Consensus 371 ~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 371 GIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred ccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 77777654 789999999988888888888876542 2588999888877777777666654
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-20 Score=235.08 Aligned_cols=331 Identities=14% Similarity=0.005 Sum_probs=214.1
Q ss_pred HhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcc----hhHHH
Q psy10222 305 SAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSAT----KVWLL 380 (1693)
Q Consensus 305 ~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~----s~~~l 380 (1693)
.+...|.+.+ . +++.++.++..+.+.+++++++++.|++.||+|||+++..+.++++++++++++++ +++.+
T Consensus 48 ~~~~~p~l~~---~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 123 (452)
T PRK11273 48 FALAMPYLVE---Q-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVM 123 (452)
T ss_pred HHHhhHHHHH---c-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHH
Confidence 3456676653 3 88999999999999999999999999999999999999999999999999998864 78889
Q ss_pred HHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHH-HHhhhhcccccccCeEEEeecC----------
Q psy10222 381 CVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGIL-VSHLLDHLPTVRHLGLVMALVG---------- 449 (1693)
Q Consensus 381 l~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~-lgp~lg~~l~~~~gWr~~f~i~---------- 449 (1693)
++.|+++|++.|..+|...+.+.||+|+++||+++|+++.+..+|.. .+|+++..+....|||+.|++.
T Consensus 124 ~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l 203 (452)
T PRK11273 124 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALF 203 (452)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998889999999999999999999999999875 4555443443456999888774
Q ss_pred ---CCcccccc---ccc----C--c-----cccc-ccccc------hhhHHHHH-HHHHHHHHHhhhhhhhhhhhccccc
Q psy10222 450 ---PLPQRSYL---HLG----N--R-----LFSF-SYLTG------YCLFQLLA-AAGPIFATLGSGMTSGFSAVLLPQL 504 (1693)
Q Consensus 450 ---~~p~~~~~---~~~----~--~-----~~~~-~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 504 (1693)
..++.+.. +.. . + .... ..... .+.+..+. .+...+..........+.+.++.+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~ 283 (452)
T PRK11273 204 AFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV 283 (452)
T ss_pred HHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111000 000 0 0 0000 00000 01111111 1111121211122223333333321
Q ss_pred cc-C--C-CCcccccchhHHHHHHHHHHhhhhh--chhHHH-HHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhhhhC
Q psy10222 505 ES-A--N-STIPITPEDGSWIACVLSCILMDLY--GRRFTN-LILCVPFVLGWVIMSM--ATEVWLICVGRFLTGLSVGL 575 (1693)
Q Consensus 505 ~~-~--~-~~~~~~~~~g~~iG~~~~G~lsDr~--GRk~~l-~~~~~~~~i~~~~~~~--~~~~~~l~~~r~l~G~~~g~ 575 (1693)
.+ . . .........+.++|.++.|+++||+ |||+.. .....+..++.+.... ..+.+...+..+..|.+..+
T Consensus 284 ~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 363 (452)
T PRK11273 284 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYG 363 (452)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHh
Confidence 11 1 0 1112223346678899999999999 555432 2222222232222222 23444455556666665544
Q ss_pred ChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHH-HHHhhhhh----hhHHHHHHhHHHHHHHHHHhh
Q psy10222 576 SSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFI-SHLLGTFL----HWKTASAVCALFPFISCIFVY 639 (1693)
Q Consensus 576 ~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~-~~~~~~~~----~wr~~~~~~~~~~~i~~~~~~ 639 (1693)
......++..|..|++.||++.++.+....+|..+ ++.+.+.. +|+..+.+.+..++++++...
T Consensus 364 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 364 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 44445567889999999999999999888887554 66655544 799998888877777665544
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-20 Score=236.77 Aligned_cols=323 Identities=13% Similarity=0.029 Sum_probs=219.9
Q ss_pred cCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHhhhccccc
Q psy10222 318 TIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSA--TKVWLLCVGRFLTGLSIGFLT 395 (1693)
Q Consensus 318 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a--~s~~~ll~~R~l~Gig~g~~~ 395 (1693)
+++++..+.|++.+.+++++.+++++.|++.||+|||+++..+.++++++++++.++ ++++.+++.|+++|++.|..+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence 489999999999999999999999999999999999999999999999999998654 568899999999999999999
Q ss_pred hhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhccccccc-CeEEEeecC----------------CCccccccc
Q psy10222 396 PPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRH-LGLVMALVG----------------PLPQRSYLH 458 (1693)
Q Consensus 396 ~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~-gWr~~f~i~----------------~~p~~~~~~ 458 (1693)
|...+++.||+|++|||+++|+...+..+|.+++|++++++.+.+ |||++|++. +.|......
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~ 229 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI 229 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCC
Confidence 999999999999999999999999999999999999999999884 999999875 112111000
Q ss_pred cc-C--------cc-c-cccc----ccchhhHHHHHHHHHH-HHHHhhhhhhhhhhhccccc-ccCC---CCcccccchh
Q psy10222 459 LG-N--------RL-F-SFSY----LTGYCLFQLLAAAGPI-FATLGSGMTSGFSAVLLPQL-ESAN---STIPITPEDG 518 (1693)
Q Consensus 459 ~~-~--------~~-~-~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-~~~~---~~~~~~~~~g 518 (1693)
.+ + +. . +.+. ....+.+..+...... ...+.......|.+.++.+. +.+. ..+......+
T Consensus 230 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~ 309 (465)
T TIGR00894 230 SKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLF 309 (465)
T ss_pred CHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHH
Confidence 00 0 00 0 0000 0001111222222211 11112222223333333221 1111 1122344567
Q ss_pred HHHHHHHHHHhhhhhchhHH--------HHHHHHHH--HHHHHHHHh-cchHHHHHHHHHHHHhhhhCChhHHHHHHHhc
Q psy10222 519 SWIACVLSCILMDLYGRRFT--------NLILCVPF--VLGWVIMSM-ATEVWLICVGRFLTGLSVGLSSPPSIVYIAES 587 (1693)
Q Consensus 519 ~~iG~~~~G~lsDr~GRk~~--------l~~~~~~~--~i~~~~~~~-~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~ 587 (1693)
.+++.++.|+++||+++|+. +..+.... .+..+.... ..+....++...+.+.+.+...+.......|.
T Consensus 310 ~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 389 (465)
T TIGR00894 310 AWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDL 389 (465)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhc
Confidence 78899999999999875421 11111111 111111222 23444445555666666666666555666677
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHhhhhh-------hhHHHHHHhHHHHHHHHHHhhcc
Q psy10222 588 TEPRYRGAILAIVSLAISSGIFISHLLGTFL-------HWKTASAVCALFPFISCIFVYST 641 (1693)
Q Consensus 588 ~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~-------~wr~~~~~~~~~~~i~~~~~~~l 641 (1693)
.|+ .+|.+.++.+....+|..+++.+.+.+ +|+..+.+.++..++..+...+.
T Consensus 390 ~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 390 APR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred Chh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence 764 899999999999999999999877653 38888888887777776655444
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-20 Score=228.80 Aligned_cols=321 Identities=15% Similarity=0.081 Sum_probs=216.8
Q ss_pred hhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHHH
Q psy10222 303 GFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCV 382 (1693)
Q Consensus 303 ~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~ 382 (1693)
......+|.+.++ ++.+.++.++..+.+.++..+++++.|+++||+|||++++.+.++++++.++++++++++.+++
T Consensus 20 ~~~~~~lp~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 96 (392)
T PRK10473 20 DMYLVGLPRIAAD---LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLA 96 (392)
T ss_pred HHHhhhHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 3344567777777 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC-------------
Q psy10222 383 GRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG------------- 449 (1693)
Q Consensus 383 ~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~------------- 449 (1693)
.|+++|++.+..++...+++.|++|+++|++++|+.+....+|..++|.+++++.+.+|||+.|++.
T Consensus 97 ~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 176 (392)
T PRK10473 97 GRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLF 176 (392)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988889999887664
Q ss_pred CCcccccccccCcccccc-cccchhhHHHHH-HHHHHHHHHhhhhhhhhhhhccc-ccccCCCC---cccccchhHHHHH
Q psy10222 450 PLPQRSYLHLGNRLFSFS-YLTGYCLFQLLA-AAGPIFATLGSGMTSGFSAVLLP-QLESANST---IPITPEDGSWIAC 523 (1693)
Q Consensus 450 ~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~---~~~~~~~g~~iG~ 523 (1693)
..++.+....+.+....+ .....+.+.... .....+..........+.+.+.. +++.+... .......+.+++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~ 256 (392)
T PRK10473 177 ILKETRPARAPAASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVS 256 (392)
T ss_pred HcCCCCCcccCCccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 111111110000000000 000011111111 11111111111111111111211 11111111 1223445677899
Q ss_pred HHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchh-hHHHHHHHH
Q psy10222 524 VLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYR-GAILAIVSL 602 (1693)
Q Consensus 524 ~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~R-g~~~~~~~~ 602 (1693)
++.|++.||+|||+.+..+..+..++.+...+.++.+.....-.+.+.|.+...+. .+..+..|.++| |.+.++..+
T Consensus 257 ~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~ 334 (392)
T PRK10473 257 FSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGV--AMSQALGPFSLRAGVASSTLGI 334 (392)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHhccCcccccHHHHHHHH
Confidence 99999999999999999888888887777776655554444444544444443333 344455554444 556666666
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHhH
Q psy10222 603 AISSGIFISHLLGTFLHWKTASAVCA 628 (1693)
Q Consensus 603 ~~~lG~~~~~~~~~~~~wr~~~~~~~ 628 (1693)
...+|..+++.+....++.......+
T Consensus 335 ~~~~g~~~~~~l~~~~g~~~~~~~~~ 360 (392)
T PRK10473 335 AQVCGSSLWIWLAAVLGISAWNMLIG 360 (392)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHH
Confidence 66777777777776666654333333
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.4e-19 Score=220.81 Aligned_cols=364 Identities=12% Similarity=0.027 Sum_probs=224.5
Q ss_pred hhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH---hhh-
Q psy10222 1246 SAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIIS---LAT- 1321 (1693)
Q Consensus 1246 ~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~---~a~- 1321 (1693)
...+...+.+|...+ +++|.++.+.+++.+++.++..++++++|+++||+|||++++.+..+..++..... .++
T Consensus 24 ~~~~~~~~~~~~~l~--~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (420)
T PRK09528 24 FIWSSWFSFFPIWLH--DINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPL 101 (420)
T ss_pred HHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555443 36899999999999999999999999999999999999999887766655433221 111
Q ss_pred ----hHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc---hhHHHHHHhHHH
Q psy10222 1322 ----EVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL---HWKTTSAVCALF 1394 (1693)
Q Consensus 1322 ----~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l---~WR~~f~i~~i~ 1394 (1693)
......+++++.|.+.....+....+..|. .++|++..+.......+|..++|.+++.+ +||++|++.++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~ 179 (420)
T PRK09528 102 LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGS 179 (420)
T ss_pred HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHH
Confidence 111223344444444333333333333222 34677888888888899999999998877 899999998888
Q ss_pred HHHHHHHhccc-cCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhccc
Q psy10222 1395 PCASFIFAYFT-PESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCT 1473 (1693)
Q Consensus 1395 ~~v~lv~~~~l-pEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1473 (1693)
.++.++..+++ ||.|+-...+ ++ + +.+ +.+......++.++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~---~~-------------~------------~~~--------~~~~~~~~~~~~l~~~ 223 (420)
T PRK09528 180 ALILLVLLFFAKPDAPSTAKVA---NA-------------L------------GAN--------ASAVSLKDALALLKLP 223 (420)
T ss_pred HHHHHHHHhcccccccchhhhc---cc-------------h------------hcc--------cccccHHHHHHHccCC
Confidence 87766666554 3432100000 00 0 000 0000111233455565
Q ss_pred CchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh----cCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHH
Q psy10222 1474 EFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE----VSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLS 1548 (1693)
Q Consensus 1474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~ 1548 (1693)
..+.-.+........ +.....+.|.++.+ .+.+ ...+.......++..++.++.+++.||+|||+.+..+
T Consensus 224 ~~~~l~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~ 298 (420)
T PRK09528 224 KFWFLVLYVIGVACF-----YDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLA 298 (420)
T ss_pred CeEeehHHHHHHHHH-----HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 544332222121111 11122223333322 2333 3345555666777889999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHH-HHHHHHHHHHHHHH
Q psy10222 1549 CLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGI-STCFAFLTLFVVVK 1627 (1693)
Q Consensus 1549 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~-~~~~~~lg~~i~~~ 1627 (1693)
..+.++..+.+ . . ..+.+..+.. ....+.......+....+..|.+|++.++++.+. .++...+|+.+++.
T Consensus 299 ~~l~~~~~~l~-~---~---~~~~~~~~~~-~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~ 370 (420)
T PRK09528 299 GTIMAVRIIGS-G---F---ATGPLEVSIL-KLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLST 370 (420)
T ss_pred HHHHHHHHHHH-H---h---cccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHH
Confidence 77766655544 1 1 1122322222 2222222222233345677888899998887665 56778899999999
Q ss_pred HHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhccC
Q psy10222 1628 TGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPE 1662 (1693)
Q Consensus 1628 ~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~~~e 1662 (1693)
+.+.+.+..|++..|.+.+++.++..++.+...++
T Consensus 371 ~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 371 LAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999998888777766655544
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-20 Score=230.74 Aligned_cols=335 Identities=18% Similarity=0.114 Sum_probs=221.1
Q ss_pred hhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHH--HH---HHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHH
Q psy10222 297 SSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASM--AA---LPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIII 371 (1693)
Q Consensus 297 ~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~--~~---~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~ 371 (1693)
..+...+..+...|.+.++.. ++.++++.+...+. +. +...+++++.|++.||+||||++..+.++++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 4 VEWFDFYLYGFAAVLVFHTFF-PPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 445566667777777766622 23555665554443 22 3334688999999999999999999999999999999
Q ss_pred HhcchhH--------HHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccc------
Q psy10222 372 SSATKVW--------LLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPT------ 437 (1693)
Q Consensus 372 ~~a~s~~--------~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~------ 437 (1693)
+++++++ .+++.|+++|++.|...+...+++.|++|+++|++++++.+.+..+|.++++.++..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~ 162 (394)
T TIGR00883 83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162 (394)
T ss_pred hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9999976 47889999999999999999999999999999999999999999999999998876553
Q ss_pred --cccCeEEEeecC------------CCccccccccc--Cccccccc---ccchhhHHHHHHHHH-HHHHHhhhhhhhhh
Q psy10222 438 --VRHLGLVMALVG------------PLPQRSYLHLG--NRLFSFSY---LTGYCLFQLLAAAGP-IFATLGSGMTSGFS 497 (1693)
Q Consensus 438 --~~~gWr~~f~i~------------~~p~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 497 (1693)
+.++||+.|++. ..++.+....+ +++..... ..+..++........ ............+.
T Consensus 163 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (394)
T TIGR00883 163 ALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYL 242 (394)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhccccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999888765 11111110000 00000000 001111112211111 11111222222233
Q ss_pred hhcccc-cccCCCC---cccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHH--HHHHh--cchHHHHHHHHHHH
Q psy10222 498 AVLLPQ-LESANST---IPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGW--VIMSM--ATEVWLICVGRFLT 569 (1693)
Q Consensus 498 ~~~l~~-~~~~~~~---~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~--~~~~~--~~~~~~l~~~r~l~ 569 (1693)
+.+..+ ...+... .......+..++.++.|+++||+|||+.+.....+..+.. ....+ .++.+.+....++.
T Consensus 243 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (394)
T TIGR00883 243 PTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGL 322 (394)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 333321 1111111 1222334667888999999999999998775544443332 12222 24566777788889
Q ss_pred HhhhhCChhHHHHHHHhccCcchhhHHHHH-HHHHHHHHHHHHHHhhhhh----h-hHHHHHHhHHHHH
Q psy10222 570 GLSVGLSSPPSIVYIAESTEPRYRGAILAI-VSLAISSGIFISHLLGTFL----H-WKTASAVCALFPF 632 (1693)
Q Consensus 570 G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~lG~~~~~~~~~~~----~-wr~~~~~~~~~~~ 632 (1693)
|++.+...+...+++.|..|++.|+++.++ .+....+|..++|.+.+.+ + |+..........+
T Consensus 323 g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 323 ALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 999988999999999999999999998887 4566677887888777655 4 7776666554433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=224.88 Aligned_cols=326 Identities=15% Similarity=0.050 Sum_probs=232.3
Q ss_pred hhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCch----hHHHHHHHHHHHHHHHHhcchhHHHH
Q psy10222 306 AVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRF----SNLILCIPFVLGWIIISSATKVWLLC 381 (1693)
Q Consensus 306 ~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~----vl~~~l~~~~~~s~l~~~a~s~~~ll 381 (1693)
+...|.++...+++|.+.+++|++.+.+.+...+++++.|++.||+|||+ ++..+..++.+ .+++.+++++.++
T Consensus 21 ~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~ 98 (382)
T TIGR00902 21 GIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLF 98 (382)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHH
Confidence 44555555554559999999999999999999999999999999999844 33333333333 3556789999999
Q ss_pred HHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC------------
Q psy10222 382 VGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG------------ 449 (1693)
Q Consensus 382 ~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~------------ 449 (1693)
+.|+++|.+.+...|.+.+++.++ ++||+++.|....+.++|.+++|++++++.+++|||..|++.
T Consensus 99 ~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 176 (382)
T TIGR00902 99 IAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLIGFL 176 (382)
T ss_pred HHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988665 478999999999999999999999999999999999888654
Q ss_pred CCcccccccccC-cc-cc-cccccchhhHHHHH-HHHHHHHHHhhhhhhhhhhhcccccccCCCCccc---ccchhHHHH
Q psy10222 450 PLPQRSYLHLGN-RL-FS-FSYLTGYCLFQLLA-AAGPIFATLGSGMTSGFSAVLLPQLESANSTIPI---TPEDGSWIA 522 (1693)
Q Consensus 450 ~~p~~~~~~~~~-~~-~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~g~~iG 522 (1693)
..|..+....++ +. .. .......+.++.+. .....+..........+.+.++.+.+.+...... ....+.+++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~ 256 (382)
T TIGR00902 177 IKPTIPPKDAIPEDESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIII 256 (382)
T ss_pred cCCCCCCCccccccccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHH
Confidence 011100000000 00 00 00011112222222 2222332333333444445455443222221111 223355567
Q ss_pred HHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHH-
Q psy10222 523 CVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVS- 601 (1693)
Q Consensus 523 ~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~- 601 (1693)
.++.|++.||+|+|+.+.++.+...+.....+++++.+++++..++.|++.|...+....|+.+. |+++|+...++++
T Consensus 257 ~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~ 335 (382)
T TIGR00902 257 FAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNA 335 (382)
T ss_pred HHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999998 9999999999986
Q ss_pred HHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHH
Q psy10222 602 LAISSGIFISHLLGTFL----HWKTASAVCALFPFISCIF 637 (1693)
Q Consensus 602 ~~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~ 637 (1693)
....+|..+++.+++.+ ++ ..+.+.++.++++++.
T Consensus 336 ~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 336 LAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 46778888888888776 44 3455555555555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-20 Score=230.53 Aligned_cols=320 Identities=16% Similarity=0.052 Sum_probs=222.4
Q ss_pred hhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcc
Q psy10222 296 FSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSAT 375 (1693)
Q Consensus 296 ~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~ 375 (1693)
..........+...|.+.++ +|.+.++.+++.+.+.++..+++++.|+++||+|||+++..+.++++++.+++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 81 (379)
T TIGR00881 5 AAYYLVRKNFALAMPYLVEE---IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST 81 (379)
T ss_pred hHHHHhHHhhhhhhHHHHHH---hCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh
Confidence 44555666677788988888 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHh-hhhcccccccCeEEEeecC-----
Q psy10222 376 KVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSH-LLDHLPTVRHLGLVMALVG----- 449 (1693)
Q Consensus 376 s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp-~lg~~l~~~~gWr~~f~i~----- 449 (1693)
+++.+++.|+++|++.|...+...+++.|++|+++|++++|+.+.+..+|..++| .+++.+.+..+||+.|++.
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAI 161 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 5777787889999888754
Q ss_pred -----------CCccccccccc----Ccc-----c-ccc--cccc------hhhHHHH-HHHHHHHHHHhhhhhhhhhhh
Q psy10222 450 -----------PLPQRSYLHLG----NRL-----F-SFS--YLTG------YCLFQLL-AAAGPIFATLGSGMTSGFSAV 499 (1693)
Q Consensus 450 -----------~~p~~~~~~~~----~~~-----~-~~~--~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 499 (1693)
+.|.....+.. .+. . ..+ .... .+.+..+ ......+..........+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (379)
T TIGR00881 162 IVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPL 241 (379)
T ss_pred HHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110000000 000 0 000 0000 0111111 111112212122222223333
Q ss_pred ccccc-ccCC---CCcccccchhHHHHHHHHHHhhhhhc-hhH-HHHHHH-HHHHHHHHHHHh--cchHHHHHHHHHHHH
Q psy10222 500 LLPQL-ESAN---STIPITPEDGSWIACVLSCILMDLYG-RRF-TNLILC-VPFVLGWVIMSM--ATEVWLICVGRFLTG 570 (1693)
Q Consensus 500 ~l~~~-~~~~---~~~~~~~~~g~~iG~~~~G~lsDr~G-Rk~-~l~~~~-~~~~i~~~~~~~--~~~~~~l~~~r~l~G 570 (1693)
++.+. +.+. .........+.++|.++.|+++||.+ ||+ .+.... ....++...... ..+.....+..++.|
T Consensus 242 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 321 (379)
T TIGR00881 242 YLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALG 321 (379)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH
Confidence 33221 1111 11223344577789999999999864 333 222222 112222222222 234555666777788
Q ss_pred hhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10222 571 LSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL 618 (1693)
Q Consensus 571 ~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~ 618 (1693)
+..++..+....+..|..|++.||++.++.+....+|..+++.+.+.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 369 (379)
T TIGR00881 322 FLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYL 369 (379)
T ss_pred HHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHH
Confidence 777777777788999999999999999999999999999988776654
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-18 Score=213.38 Aligned_cols=362 Identities=15% Similarity=0.106 Sum_probs=244.8
Q ss_pred hHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhc-----hhHH-HHHHHHHHHHHH
Q psy10222 1240 ATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMY-----GRRL-TNLVLCIPFIMG 1313 (1693)
Q Consensus 1240 ~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~-----GRr~-~ll~~~~l~~i~ 1313 (1693)
..+..+...+....++|..-+ +.+.|.++.+++..+... .+..+++|+++||+ |||+ .+..+.++..++
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~---~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMT---VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 346678888888899998886 679999999999777665 58999999999999 8875 788888888888
Q ss_pred HHHHHhh---hhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc-----hhH
Q psy10222 1314 WVIISLA---TEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL-----HWK 1385 (1693)
Q Consensus 1314 ~ll~~~a---~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l-----~WR 1385 (1693)
..+.++. .+++.+.+..++.|+..+...+...+++.|+.|+++|+++.++...+..+|.++++.++..+ +||
T Consensus 82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~ 161 (402)
T PRK11902 82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG 161 (402)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence 8888887 45788888989999999999999999999999999999999999999999999998876654 899
Q ss_pred HHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhh
Q psy10222 1386 TTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLE 1465 (1693)
Q Consensus 1386 ~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1465 (1693)
..|++.++..++..+..+++||+++. +++.++. . ++....
T Consensus 162 ~~f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~~--------------~-----------------------~~~~~~ 201 (402)
T PRK11902 162 NTYLLMAGLMLAGALTTLWAPEPEVP---ARPPRSL--------------G-----------------------EAVVGP 201 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccc---ccccchh--------------H-----------------------HHHHHH
Confidence 99999888877665555567876531 0000000 0 001122
Q ss_pred hhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHH-HHHHHHHHHHHHHhhhhcCChh
Q psy10222 1466 WKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVI-DIVRVVMAFVTCGLLRIFGRRP 1543 (1693)
Q Consensus 1466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~-~i~~~ig~~~~g~l~dr~grr~ 1543 (1693)
+++.+++|..+.-............ ....+..+.+.++.|.+ .+.+...... .++.+++.++++++.||++||+
T Consensus 202 ~~~l~~~~~~~~~l~~~~l~~~~~~----~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~ 277 (402)
T PRK11902 202 LRDFFSRRGAWALLLLIVLYKLGDA----FAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYR 277 (402)
T ss_pred HHHHHhCcCHHHHHHHHHHHHhHHH----HHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3455566554433322222221111 11123334455556777 4444444333 3468899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHH---HHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHH
Q psy10222 1544 LALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMF---YMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFL 1620 (1693)
Q Consensus 1544 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~l 1620 (1693)
.+..+.....+..+.+ ...... .++.+.......+ ..+............++.+.+|.+. .+..+....+
T Consensus 278 ~l~~~~~~~~l~~l~~-~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l 350 (402)
T PRK11902 278 SLMLFGVLQAVSNLGY-WVLAVT--PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASV 350 (402)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHH
Confidence 8776666655544333 111111 1222322222221 2222333334455567777777544 4555555667
Q ss_pred HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHh
Q psy10222 1621 TLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLY 1657 (1693)
Q Consensus 1621 g~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~ 1657 (1693)
+...++.+.+.+.+..|++..|.+.+.+++++.++.+
T Consensus 351 ~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 351 GRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 7776677899999999999999988888887766554
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-19 Score=249.89 Aligned_cols=346 Identities=16% Similarity=0.117 Sum_probs=228.7
Q ss_pred cchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHhhhhhchhhhHh
Q psy10222 1269 PEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVII---SLATEVWVILAGRFLTGFALGLSSPVAL 1345 (1693)
Q Consensus 1269 ~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~---~~a~~~~~lli~R~l~Gig~g~~~~~~~ 1345 (1693)
....+++.+++.++..++++++|+++||+|||++++.+.++..++.++. ..+++++.++++|+++|++.|...+...
T Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 125 (1146)
T PRK08633 46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKY 125 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHH
Confidence 3457999999999999999999999999999999999987766665554 4457899999999999999999999999
Q ss_pred HHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc-h------------hHHHHHHhHHHHH-HHHHHhccccCChHH
Q psy10222 1346 VYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL-H------------WKTTSAVCALFPC-ASFIFAYFTPESPPW 1411 (1693)
Q Consensus 1346 ~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l-~------------WR~~f~i~~i~~~-v~lv~~~~lpEsp~~ 1411 (1693)
+++.|++|+++|++++++...+..+|.++|+++++++ . |++.+.+..+... +.++..+++||+|+.
T Consensus 126 ~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1146)
T PRK08633 126 GIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAA 205 (1146)
T ss_pred hhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCC
Confidence 9999999999999999999999999999999998876 2 3444444333333 333444557887642
Q ss_pred HHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHh
Q psy10222 1412 LASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQF 1491 (1693)
Q Consensus 1412 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1491 (1693)
...+++ + .... ........++..++++..+...+...+.+.
T Consensus 206 ~~~~~~--~----------~~~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---- 246 (1146)
T PRK08633 206 APEVFD--K----------KKYL-----------------------FPKLLWRNLKLLRSDRVLWLAIIGLSYFWF---- 246 (1146)
T ss_pred Cccccc--c----------cccc-----------------------cHHHHHHHHHHHhcCcHHHHHHHHHHHHHH----
Confidence 110000 0 0000 000111223344444433322222222111
Q ss_pred hhhHHHHHhHHHHHh-hcCCC-c-hhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10222 1492 SGLNTLIFYTVGISK-EVSPD-V-NEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQG 1568 (1693)
Q Consensus 1492 ~~~~~~~~~~p~~~~-~~g~s-~-~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~ 1568 (1693)
.......+.|.+++ ..|.+ . ..+......+++.+++.++.+++.||+++++.+.++.++.+++.+.+ ...
T Consensus 247 -~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~-~~~----- 319 (1146)
T PRK08633 247 -ISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLL-PTA----- 319 (1146)
T ss_pred -HHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHH-HHh-----
Confidence 12233445555554 45777 4 67778888888999999999999999999988887777666665554 111
Q ss_pred cCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhHHHHHH
Q psy10222 1569 LLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLS-IGTPETFGLYGC 1647 (1693)
Q Consensus 1569 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~-~g~~~~f~i~~~ 1647 (1693)
.+.....+..++.+++.....+...+++.+..|++.|+++.|+.+.+..++..+++.+.+.+... .++...+.+.+.
T Consensus 320 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 320 --PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred --hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 12222222333333333344455677888999999999999999999999998887766654431 233344555555
Q ss_pred HHHHHHHHHhhhccC
Q psy10222 1648 ITAFGFVFLYIFLPE 1662 (1693)
Q Consensus 1648 ~~ll~~v~~~~~~~e 1662 (1693)
+.++..++.+...|+
T Consensus 398 ~~~~~~~~~~~~~~~ 412 (1146)
T PRK08633 398 VTLIGTLYTLLLLPD 412 (1146)
T ss_pred HHHHHHHHHHHHhHH
Confidence 544444444333343
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=225.63 Aligned_cols=314 Identities=12% Similarity=0.005 Sum_probs=215.8
Q ss_pred hhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHHH
Q psy10222 303 GFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCV 382 (1693)
Q Consensus 303 ~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~ 382 (1693)
.......|.++...++++.++++.++..+.+.+++.+++++.|++.||+|||+++..+.++++++.++++++++++++++
T Consensus 20 ~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (401)
T PRK11043 20 LATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLV 99 (401)
T ss_pred HHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 33344445444333449999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC------------C
Q psy10222 383 GRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG------------P 450 (1693)
Q Consensus 383 ~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~------------~ 450 (1693)
.|+++|++.+...+...+++.|++|+++++++.+.......+|..++|.+++++.+.+|||+.|++. .
T Consensus 100 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 100 LRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888899999999999999999999999999999999999999999999888764 1
Q ss_pred CcccccccccCcccccccccchhhHHHHH-HHHHHHHHHhhhhhhhhhhhcccccccCCCCc---ccccchhHHHHHHHH
Q psy10222 451 LPQRSYLHLGNRLFSFSYLTGYCLFQLLA-AAGPIFATLGSGMTSGFSAVLLPQLESANSTI---PITPEDGSWIACVLS 526 (1693)
Q Consensus 451 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~g~~iG~~~~ 526 (1693)
.++..... +.++.........+.+.... ................+.+.++.+.+.+.... ......+..+|+++.
T Consensus 180 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~ 258 (401)
T PRK11043 180 LKPSKKAR-KQSQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGC 258 (401)
T ss_pred cCCCCCcc-ccchHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110000 00000000000011111111 11111111111111122222332221111111 112234667888999
Q ss_pred HHhhhhhchhHHHHHHHHHHHHHHHH---HHh--cchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHH
Q psy10222 527 CILMDLYGRRFTNLILCVPFVLGWVI---MSM--ATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVS 601 (1693)
Q Consensus 527 G~lsDr~GRk~~l~~~~~~~~i~~~~---~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~ 601 (1693)
+++.||+|||+.+........++.+. ... .++.+.+.+...+.|++.+..++....+..|..| ++||++.++.+
T Consensus 259 ~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~ 337 (401)
T PRK11043 259 RAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQN 337 (401)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHH
Confidence 99999999998765544443333222 112 3445555666778899999999988888888876 67999999999
Q ss_pred HHHHHHHHHHHHhhhhh
Q psy10222 602 LAISSGIFISHLLGTFL 618 (1693)
Q Consensus 602 ~~~~lG~~~~~~~~~~~ 618 (1693)
.....+...++.+.+.+
T Consensus 338 ~~~~~~~~~~~~~~g~l 354 (401)
T PRK11043 338 TLQLGLCFLASLLVSAL 354 (401)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 88777777777666655
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-18 Score=212.15 Aligned_cols=348 Identities=11% Similarity=0.006 Sum_probs=231.3
Q ss_pred hhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhH----HHHHHHHHHHHHHHHHHHh
Q psy10222 1244 AGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRR----LTNLVLCIPFIMGWVIISL 1319 (1693)
Q Consensus 1244 ~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr----~~ll~~~~l~~i~~ll~~~ 1319 (1693)
.....++..|.+|...+ |++.|..+.+++.+++.++..++++++|+++||+||| +.+.+...+. .......
T Consensus 16 ~~~~~g~~~p~l~~~l~---~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~ 90 (382)
T PRK11128 16 YFFAYGVFLPFWSVWLK---GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG 90 (382)
T ss_pred HHHHHHHHhhhHHHHHH---hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence 33455777788887775 7899999999999999999999999999999999984 3333222222 2233445
Q ss_pred hhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHHH
Q psy10222 1320 ATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFP 1395 (1693)
Q Consensus 1320 a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~ 1395 (1693)
++|++.+++.|++.|++.+...+...+++.|+ +++|+++.+......++|.++||++++.+ +||..|++.+...
T Consensus 91 ~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~ 168 (382)
T PRK11128 91 AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGV 168 (382)
T ss_pred cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence 68999999999999999999999888888887 45688888888888899999999999987 9999999887655
Q ss_pred HHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCc
Q psy10222 1396 CASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEF 1475 (1693)
Q Consensus 1396 ~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1475 (1693)
++..+...+.||.++ +++.++ + .++....+++.++++..
T Consensus 169 ~~~~~~~~~~~~~~~----~~~~~~----------------------------~---------~~~~~~~~~~i~~~~~~ 207 (382)
T PRK11128 169 ASMLLGQLLRPTIMP----QGESRQ----------------------------Q---------ESAGWPAWKALLKEPTV 207 (382)
T ss_pred HHHHHHHHccCCCCC----cccccc----------------------------c---------cccccchHHHHHcChhH
Confidence 544443334555321 000000 0 00011234556666544
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHH
Q psy10222 1476 LKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCL 1554 (1693)
Q Consensus 1476 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i 1554 (1693)
+.-......... .......+.|.+.++.|.+ .+.+.......++.++..++.+++.||+++|+.+..+....++
T Consensus 208 ~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~ 282 (382)
T PRK11128 208 WRFLLCVSLLQG-----SHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVV 282 (382)
T ss_pred HHHHHHHHHHHH-----HhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 332222222211 1223334556666677777 5566666677778888889999999999999998888777776
Q ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy10222 1555 SLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCF-AFLTLFVVVKTGPLLF 1633 (1693)
Q Consensus 1555 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~-~~lg~~i~~~~~~~l~ 1633 (1693)
..+.+ . . .++.+......++...... ...+....+..+. +++.+++..+..+.. ..+|..+++.+.+.++
T Consensus 283 ~~~~~-~---~---~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~ 353 (382)
T PRK11128 283 RWGLM-G---S---TTALPWLIVIQILHCGTFT-VCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLY 353 (382)
T ss_pred HHHHH-H---h---hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65444 1 1 1223333333333322222 2344445566666 455568888877644 4567789999999999
Q ss_pred HhcCcchhHHHHHHHHHHHHH
Q psy10222 1634 LSIGTPETFGLYGCITAFGFV 1654 (1693)
Q Consensus 1634 ~~~g~~~~f~i~~~~~ll~~v 1654 (1693)
+..|. ..+...+.+.+++.+
T Consensus 354 ~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 354 QHLGA-GVFWVMALVALPALF 373 (382)
T ss_pred HhccH-HHHHHHHHHHHHHHH
Confidence 99886 456666655554433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-18 Score=214.89 Aligned_cols=365 Identities=12% Similarity=0.045 Sum_probs=238.0
Q ss_pred HhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH--
Q psy10222 1241 TLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIIS-- 1318 (1693)
Q Consensus 1241 ~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~-- 1318 (1693)
.++.........+.+|.... +++|.++.+.+++.+++.++..++++++|+++||+|||+.++.+.....++.....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~--~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~ 88 (396)
T TIGR00882 11 FFLYFFIMSAYFPFFPIWLH--DVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIY 88 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666543 36899999999999999999999999999999999999999887777655443321
Q ss_pred -hh-----hhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc---hhHHHHH
Q psy10222 1319 -LA-----TEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL---HWKTTSA 1389 (1693)
Q Consensus 1319 -~a-----~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l---~WR~~f~ 1389 (1693)
+. +.+..+++.|+++|++.+...+....+..|..+ +++...+......++|.+++|.+++.+ +||++|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~ 166 (396)
T TIGR00882 89 VFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFW 166 (396)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHH
Confidence 11 234456778999999999988888888877543 345566777777889999999998876 9999999
Q ss_pred HhHHHHHHHHHHhcc-ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhH
Q psy10222 1390 VCALFPCASFIFAYF-TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKK 1468 (1693)
Q Consensus 1390 i~~i~~~v~lv~~~~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1468 (1693)
+.+.+.++..+..++ .||+|+. ++.++ ..+. + +.+++.++.++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~----~~~~-----------------~--------~~~~~~~~~~~ 210 (396)
T TIGR00882 167 LGSGFALILMLLLMFAKPKAPSS-------ATVAN----ALGA-----------------N--------ASAFSLKLALE 210 (396)
T ss_pred HHHHHHHHHHHHHHHhCCCCchh-------hhhhc----cccc-----------------c--------cCCCCHHHHHH
Confidence 998888877655544 4554321 00000 0000 0 00011123456
Q ss_pred hhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc----CCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChh
Q psy10222 1469 NILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEV----SPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRP 1543 (1693)
Q Consensus 1469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~ 1543 (1693)
.+++++.+.-.+...... ..+.....+.+.+.++. +.+ ...+.......+...++....+++.||+|||+
T Consensus 211 ~l~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~ 285 (396)
T TIGR00882 211 LFRQRKFWMFVLYVVGVA-----CVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN 285 (396)
T ss_pred HHcCCcHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 666665432222211111 11222222344444332 333 33455556667778888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHH-HHHHHHHHH
Q psy10222 1544 LALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGI-STCFAFLTL 1622 (1693)
Q Consensus 1544 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~-~~~~~~lg~ 1622 (1693)
.+.++..+.++..... . ...+.+.......+ .+............+..+..|++.++++.+. .+....+|+
T Consensus 286 ~l~~~~~l~~l~~~~~----~---~~~~~~~~~~~~~l-~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~ 357 (396)
T TIGR00882 286 ALLIAGTIMSVRIIGS----S---FATTALEVVILKML-HAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAM 357 (396)
T ss_pred hHHHHHHHHHHHHHHH----H---hcCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHH
Confidence 9888877766655443 1 11222333222222 2222222222334456677788888887766 568899999
Q ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhh
Q psy10222 1623 FVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYI 1658 (1693)
Q Consensus 1623 ~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~ 1658 (1693)
++++.+.+.+.+..|++.+|.+.+++.++..++..+
T Consensus 358 ~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 358 IFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888877776543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=224.21 Aligned_cols=307 Identities=13% Similarity=0.054 Sum_probs=210.8
Q ss_pred HhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHHHHH
Q psy10222 305 SAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCVGR 384 (1693)
Q Consensus 305 ~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~~R 384 (1693)
....+|.+.++ +|+++++.++..+.+.++.+++.++.|++.||+|||+++..+.++.+++.++++++++++.+++.|
T Consensus 10 ~~p~~~~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 86 (377)
T PRK11102 10 YLPALPVIAAD---FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMR 86 (377)
T ss_pred HhccHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 34556666665 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC-------------CC
Q psy10222 385 FLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG-------------PL 451 (1693)
Q Consensus 385 ~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~-------------~~ 451 (1693)
+++|++.+...+...+++.|++|+++|++++|+...+..+|..++|++++++.+.+|||+.|++. ..
T Consensus 87 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (377)
T PRK11102 87 FLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFI 166 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999988754 11
Q ss_pred cccccccccCccccccc-c----cchhhHHHHHHHHH-HHHHHhhhhhhhhhhhcc-cccccCCC---CcccccchhHHH
Q psy10222 452 PQRSYLHLGNRLFSFSY-L----TGYCLFQLLAAAGP-IFATLGSGMTSGFSAVLL-PQLESANS---TIPITPEDGSWI 521 (1693)
Q Consensus 452 p~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l-~~~~~~~~---~~~~~~~~g~~i 521 (1693)
|+......+.+ .+.+. . ...+.+........ .+..........+.+.+. ...+.+.. .+......+.++
T Consensus 167 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~ 245 (377)
T PRK11102 167 PETLPKERRQP-FHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFV 245 (377)
T ss_pred CccCcccccCC-CChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 11110000000 00000 0 00111111111111 111111111111111121 11111111 122233456778
Q ss_pred HHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHH---h-cchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHH
Q psy10222 522 ACVLSCILMDLYGRRFTNLILCVPFVLGWVIMS---M-ATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAIL 597 (1693)
Q Consensus 522 G~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~---~-~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~ 597 (1693)
++++.|++.||+|||+.+..+..+..+..+... . ..+.+...++-.+.+.+.+........++.|..| +.||.+.
T Consensus 246 ~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~ 324 (377)
T PRK11102 246 MTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTAS 324 (377)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHH
Confidence 899999999999999988887765444332222 1 2244455555555555555566666677888766 8899999
Q ss_pred HHHHHH-HHHHHHHHHHhhh
Q psy10222 598 AIVSLA-ISSGIFISHLLGT 616 (1693)
Q Consensus 598 ~~~~~~-~~lG~~~~~~~~~ 616 (1693)
++.+.. ..+|..+++.++.
T Consensus 325 ~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 325 SLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 887654 4577777776654
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-19 Score=225.37 Aligned_cols=310 Identities=13% Similarity=0.055 Sum_probs=213.8
Q ss_pred hhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHH---HhcchhHH
Q psy10222 303 GFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIII---SSATKVWL 379 (1693)
Q Consensus 303 ~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~---~~a~s~~~ 379 (1693)
.......|.++++ +++++++.|+..+.+++++.+++++.|++.||+||||++..++.+++++++++ +++++++.
T Consensus 43 ~~~~~~~p~i~~~---~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ 119 (438)
T PRK10133 43 NLNDILLPQFQQA---FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTL 119 (438)
T ss_pred HHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 4445678989888 99999999999999999999999999999999999999999999999999886 57899999
Q ss_pred HHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhccccc------------------c--
Q psy10222 380 LCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTV------------------R-- 439 (1693)
Q Consensus 380 ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~------------------~-- 439 (1693)
+++.|+++|+|.|...+...++++|+.|+++|++.+++.+....+|..+||.+++.+.. .
T Consensus 120 ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~ 199 (438)
T PRK10133 120 FLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSA 199 (438)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHH
Confidence 99999999999999999999999999887777778999999999999999988865430 0
Q ss_pred ------cCeEEEeec-C-------------CCcccccccccC-ccccc-ccc-cchhhHHHH-HHHHHHHHHHhhhhhhh
Q psy10222 440 ------HLGLVMALV-G-------------PLPQRSYLHLGN-RLFSF-SYL-TGYCLFQLL-AAAGPIFATLGSGMTSG 495 (1693)
Q Consensus 440 ------~gWr~~f~i-~-------------~~p~~~~~~~~~-~~~~~-~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~ 495 (1693)
.+||++|+. . ..|+.+...... +..+. +.. ...+.++.. ......+..........
T Consensus 200 w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~ 279 (438)
T PRK10133 200 YKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWS 279 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 256666642 1 122211100000 00000 000 001111111 11111122222222223
Q ss_pred hhhhccc-cc-ccCCC---CcccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q psy10222 496 FSAVLLP-QL-ESANS---TIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTG 570 (1693)
Q Consensus 496 ~~~~~l~-~~-~~~~~---~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 570 (1693)
|.+.++. +. +.+.. ........++.+|++++|++.||+|||+++..+..+..++.++..+.++. .-+....+.|
T Consensus 280 ~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g 358 (438)
T PRK10133 280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIALTLCS 358 (438)
T ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHH
Confidence 4433321 11 11111 12234455788999999999999999999888877776666555555543 2345677899
Q ss_pred hhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10222 571 LSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL 618 (1693)
Q Consensus 571 ~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~ 618 (1693)
++.+..+|..++...|..|+ +.+.+.++..+.. +|..+++.+.+.+
T Consensus 359 lg~~~i~P~~~s~a~~~~~~-~~~~as~l~~~~~-~g~~~~~~i~G~l 404 (438)
T PRK10133 359 AFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVMTI-IGGGIVTPVMGFV 404 (438)
T ss_pred HHHHHHHHHHHHHHHcccch-hhccchhHHhHHh-ccchHHHHHHHHH
Confidence 99999999999999999875 4667777776433 5666666555544
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=222.48 Aligned_cols=332 Identities=12% Similarity=0.029 Sum_probs=229.1
Q ss_pred hhhhhhhhHhhhhH-HhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcc
Q psy10222 297 SSGTAVGFSAVLLP-QLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSAT 375 (1693)
Q Consensus 297 ~~~l~~~~~~~~~P-~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~ 375 (1693)
..+.........+| .+.++ +|++..++|+..+.+.+...+.+++.|+++||+|||+++..+.++.+++.++.++++
T Consensus 18 ~~~~g~~~~~~~l~~~l~~~---~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~ 94 (395)
T PRK10054 18 LLTIGRGATLPFMTIYLSRQ---YSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh
Confidence 33444443333333 33344 899999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecCC-----
Q psy10222 376 KVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVGP----- 450 (1693)
Q Consensus 376 s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~~----- 450 (1693)
+++.+++.|.+.|.+.+...+...++..|.+|+++|++++|+......+|.++||++++++.+ +|||.+|++..
T Consensus 95 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i 173 (395)
T PRK10054 95 NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAF 173 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHH
Confidence 999999999999998888888899999999999999999999999999999999999999864 79999887650
Q ss_pred --------CcccccccccCcccccccccchhhHHH-HHHHHHHHHHHhhhhhhhhhhhcccccccCCC---Ccc---ccc
Q psy10222 451 --------LPQRSYLHLGNRLFSFSYLTGYCLFQL-LAAAGPIFATLGSGMTSGFSAVLLPQLESANS---TIP---ITP 515 (1693)
Q Consensus 451 --------~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~---~~~ 515 (1693)
.|+.+..+.+++....+.....+.++. .......+..+..+....+...+.+...+... ... ...
T Consensus 174 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 253 (395)
T PRK10054 174 PLVFIQIWVQRSEKAIATETGSVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVN 253 (395)
T ss_pred HHHHHHHHHhccccccccchhhhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhh
Confidence 111110000000000000000111111 11122222222222222233333332211110 000 111
Q ss_pred chhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhh
Q psy10222 516 EDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMA-TEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRG 594 (1693)
Q Consensus 516 ~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg 594 (1693)
...........|++.||++||+.+..+..+..++.....+. ++.+.+.+...+.|+|.+...+...+++.|..|++.||
T Consensus 254 ~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~ 333 (395)
T PRK10054 254 AAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKA 333 (395)
T ss_pred hhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccce
Confidence 11222335677899999999999988888887777666654 56777777888999999888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHH
Q psy10222 595 AILAIVSLAISSGIFISHLLGTFL----HWKTASAVCALFPFI 633 (1693)
Q Consensus 595 ~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i 633 (1693)
+..+..+ ...+|..++|.+++.+ +....+.+.++...+
T Consensus 334 ~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~ 375 (395)
T PRK10054 334 SYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVA 375 (395)
T ss_pred ehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHH
Confidence 9888655 4557888888777665 455555554443333
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-19 Score=220.73 Aligned_cols=312 Identities=16% Similarity=0.058 Sum_probs=219.2
Q ss_pred hhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHH
Q psy10222 301 AVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLL 380 (1693)
Q Consensus 301 ~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~l 380 (1693)
.....+..+|.+.++ +|++.++.++..+.+.+++.++.++.|++.||+||||++..+.++++++.+++ .+++++.+
T Consensus 15 ~~~~~~~~lp~l~~~---~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l 90 (355)
T TIGR00896 15 ALTSVGPLLPQIRSA---LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALL 90 (355)
T ss_pred ccccCcccHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHH
Confidence 334456788888888 99999999999999999999999999999999999999999999999999888 88999999
Q ss_pred HHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhccccccc--CeEEEeecC---------
Q psy10222 381 CVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRH--LGLVMALVG--------- 449 (1693)
Q Consensus 381 l~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~--gWr~~f~i~--------- 449 (1693)
++.|+++|+|.+...+...+++.|++| +||++++|+.+.+..+|..+++.+++.+.+.. +||+.|.+.
T Consensus 91 ~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~ 169 (355)
T TIGR00896 91 FAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL 169 (355)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999988888889999996 69999999999999999999999999887765 399777543
Q ss_pred -CCcccccccccCcccc-cccccchhhHHHH-HHHHHHHHHHhhhhhhhhhhhcccccccCCC---CcccccchhHHHHH
Q psy10222 450 -PLPQRSYLHLGNRLFS-FSYLTGYCLFQLL-AAAGPIFATLGSGMTSGFSAVLLPQLESANS---TIPITPEDGSWIAC 523 (1693)
Q Consensus 450 -~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~g~~iG~ 523 (1693)
..|..+..+..++... .......+.+..+ ......+..........+.+.++.+.+.+.. .+......+.++|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~ 249 (355)
T TIGR00896 170 AWIPQVRRRVAANQTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASA 249 (355)
T ss_pred HHhhhhccccCCCCCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 1111111110000000 0011111112221 1111122122222223334434333221111 12233455788999
Q ss_pred HHHHHhhhhh-chhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhc-cCcchhhHHHHHHH
Q psy10222 524 VLSCILMDLY-GRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAES-TEPRYRGAILAIVS 601 (1693)
Q Consensus 524 ~~~G~lsDr~-GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~-~p~~~Rg~~~~~~~ 601 (1693)
++.|+++||+ +||+.+..+..+..++.+...+.++..... ...+.|++.|...+...+.+.+. .++++++...++.+
T Consensus 250 ~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 328 (355)
T TIGR00896 250 LLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQ 328 (355)
T ss_pred HhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 9999999999 567677777777777766666654433222 45678999998888877776644 45677788889888
Q ss_pred HHHHHHHHHHHHhhhhh
Q psy10222 602 LAISSGIFISHLLGTFL 618 (1693)
Q Consensus 602 ~~~~lG~~~~~~~~~~~ 618 (1693)
....+|..++|.+.+.+
T Consensus 329 ~~~~~~~~~gp~~~G~l 345 (355)
T TIGR00896 329 SIGYLLAALGPLFVGVL 345 (355)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888776654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-18 Score=242.44 Aligned_cols=344 Identities=13% Similarity=0.039 Sum_probs=231.5
Q ss_pred chhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhH
Q psy10222 1270 EDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLV---LCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALV 1346 (1693)
Q Consensus 1270 ~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~---~~~l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~ 1346 (1693)
...++..+++.+++++.++++|+++||+|||+++.. ..++..+..+.+..++|+++++++|+++|++.+...|...+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 346888999999999999999999999999997533 33333444444445689999999999999999999999999
Q ss_pred HhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHH
Q psy10222 1347 YIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQ 1422 (1693)
Q Consensus 1347 ~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~ 1422 (1693)
++.|++|+++|++++++.+++..+|.++||++++++ +||+.|+...+..++.++..+++||++.- .++..
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---- 205 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA--APDLK---- 205 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCe----
Confidence 999999999999999999999999999999999988 89999966666666656666667766420 00000
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHH
Q psy10222 1423 QAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTV 1502 (1693)
Q Consensus 1423 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1502 (1693)
.+.. .. ......++...+++.++...+.....++ ....+..+.|
T Consensus 206 ----------~~~~-~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p 249 (1140)
T PRK06814 206 ----------IDRN-II--------------------RSTITLLKYAKADKRIWLAILGISWFWL-----VGAVVLSQLP 249 (1140)
T ss_pred ----------eccc-hH--------------------HHHHHHHHHHhcCchHHHHHHHHHHHHH-----HHHHHHHHhH
Confidence 0000 00 0011123344444433332222222221 2234445677
Q ss_pred HHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHH--------------Hh
Q psy10222 1503 GISKE-VSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILK--------------FM 1566 (1693)
Q Consensus 1503 ~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~--------------~~ 1566 (1693)
.+.++ .|.+ ...+......+++.+++.++.+++.++.++++.+..+.++.+++.+.+ .+.. ..
T Consensus 250 ~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~ 328 (1140)
T PRK06814 250 LLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDL-AFASSSVPAEPAQLKSILVF 328 (1140)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHH-Hhcccccccccccccchhhh
Confidence 77765 4766 667778888899999999999999988877776665555555444433 1110 00
Q ss_pred hccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhHHHH
Q psy10222 1567 QGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFL-SIGTPETFGLY 1645 (1693)
Q Consensus 1567 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~-~~g~~~~f~i~ 1645 (1693)
....+.|...+..++ .+++.....+...+++.+..|++.||++.|+.++...++..+++.+.+.+.+ ..++...+.+.
T Consensus 329 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~ 407 (1140)
T PRK06814 329 LSKRHGWRILIDLFG-LAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFI 407 (1140)
T ss_pred hcccccHHHHHHHHH-HHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 011223333332333 3333334444567888999999999999999999999999999999988874 34555555555
Q ss_pred HHHHHHHHHHHh
Q psy10222 1646 GCITAFGFVFLY 1657 (1693)
Q Consensus 1646 ~~~~ll~~v~~~ 1657 (1693)
+.+.++.+++.+
T Consensus 408 ~~~~~~~~~~~~ 419 (1140)
T PRK06814 408 ALANLIVAILIL 419 (1140)
T ss_pred HHHHHHHHHHHH
Confidence 554444444333
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.7e-20 Score=207.28 Aligned_cols=316 Identities=17% Similarity=0.120 Sum_probs=230.2
Q ss_pred ccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhccccch
Q psy10222 317 STIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCVGRFLTGLSIGFLTP 396 (1693)
Q Consensus 317 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~~R~l~Gig~g~~~~ 396 (1693)
...+-.++++|+++..+.+...+..++.|.+.||.|+|-.+++|+.++...|++.++..+++.+++.|.+||+|.+....
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence 44677789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccCccc-chhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecCC-------------Cccccccc-ccC
Q psy10222 397 PAIVYIAETSEPKY-RGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVGP-------------LPQRSYLH-LGN 461 (1693)
Q Consensus 397 ~~~a~i~~~~p~~~-rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~~-------------~p~~~~~~-~~~ 461 (1693)
+++++++|.||+++ ||++||+.-...++|.++||+.||.+-+..|.+.+|.+.. .+..+..+ ...
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~~ 258 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDSTE 258 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCccccc
Confidence 99999999998776 7999999999999999999999999999999999999861 00001001 000
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhhccc-----ccccCC---CCcccccchhHHHHHHHHHHhhhhh
Q psy10222 462 RLFSFSYLTGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLP-----QLESAN---STIPITPEDGSWIACVLSCILMDLY 533 (1693)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~---~~~~~~~~~g~~iG~~~~G~lsDr~ 533 (1693)
+..+.+.......-+........ ........-+.++ ++.... ....+.......+|+.+.|.++||+
T Consensus 259 ~~~~~~~Ll~dP~I~~~agai~~-----~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~ 333 (464)
T KOG3764|consen 259 QGTPMWSLLMDPYILLIAGAITF-----SNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY 333 (464)
T ss_pred cCccHHHHHhCchHhhhhcchhh-----ccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc
Confidence 00001111111111111111111 1111122222222 222111 1123445567789999999999999
Q ss_pred c--hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCc---c---hhhHHHHHHHHHHH
Q psy10222 534 G--RRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEP---R---YRGAILAIVSLAIS 605 (1693)
Q Consensus 534 G--Rk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~---~---~Rg~~~~~~~~~~~ 605 (1693)
+ |......+.+....+....-+++++.++++-++..+++.+...........+.+.. + ..|...++...++.
T Consensus 334 ~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~s 413 (464)
T KOG3764|consen 334 PHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFS 413 (464)
T ss_pred CchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHH
Confidence 9 65455556666665566666788999999999999988887776665555555443 3 55788899999999
Q ss_pred HHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHH
Q psy10222 606 SGIFISHLLGTFL----HWKTASAVCALFPFISCIF 637 (1693)
Q Consensus 606 lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~ 637 (1693)
+|..++|.+++.+ +++|...+.++..++....
T Consensus 414 la~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapv 449 (464)
T KOG3764|consen 414 LAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPV 449 (464)
T ss_pred HhhhccccccchheeehhHHHHHHHHHHHHHHHHHH
Confidence 9999999988876 7787777777666655443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-19 Score=218.97 Aligned_cols=324 Identities=14% Similarity=0.025 Sum_probs=199.7
Q ss_pred hhhHHhhh-ccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhc-----chhHHH
Q psy10222 307 VLLPQLQS-ANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSA-----TKVWLL 380 (1693)
Q Consensus 307 ~~~P~l~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a-----~s~~~l 380 (1693)
.+.|.+.+ + +++|.+|.+++.+.+.+++++..++.|++.||+|.|+++.++++++++.+++++++ ++++++
T Consensus 55 ~l~~~~~~~~---~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~l 131 (462)
T PRK15034 55 AVTVNLNKIG---FNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIF 131 (462)
T ss_pred HHHHHhhhhh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHH
Confidence 34444444 4 99999999999999999999999999999999999999999999999999999987 899999
Q ss_pred HHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHH----HHhhhhc-ccccccCeEEEee--------
Q psy10222 381 CVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGIL----VSHLLDH-LPTVRHLGLVMAL-------- 447 (1693)
Q Consensus 381 l~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~----lgp~lg~-~l~~~~gWr~~f~-------- 447 (1693)
++.|++.|++ |+.+++..+.+++|||++|||+++|+...+..+|.. ++|++.+ .+...+||+....
T Consensus 132 li~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~ 210 (462)
T PRK15034 132 IVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSL 210 (462)
T ss_pred HHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHH
Confidence 9999999998 778999999999999999999999999655555554 4444332 1334455554332
Q ss_pred -----cC-------------CCcccccccccCcccccccccchhhHHHHHHHHHHHHHHhhhhh---hhhhhhccccccc
Q psy10222 448 -----VG-------------PLPQRSYLHLGNRLFSFSYLTGYCLFQLLAAAGPIFATLGSGMT---SGFSAVLLPQLES 506 (1693)
Q Consensus 448 -----i~-------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 506 (1693)
+. ..++.+. .+..........+.++.+ ..+.+....++.. ..+.+.+..+...
T Consensus 211 ~~~~~~~~~~~iv~~i~~~~~~~~~~~----~~~~~~~~~~vlk~~~~W--llslly~~tFG~fvg~s~~lp~~~~~~~~ 284 (462)
T PRK15034 211 ANAAWIWVPLLAIATIAAWSGMNDIAS----SRASIADQLPVLQRLHLW--LLSLLYLATFGSFIGFSAGFAMLAKTQFP 284 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccc----cccCHHHHHHHhCCCchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 11 0000000 000000011111111111 1111111122111 1122222221110
Q ss_pred CCCCc--ccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHH-hc-----chHHHHHHHHHHHHhhhhCChh
Q psy10222 507 ANSTI--PITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMS-MA-----TEVWLICVGRFLTGLSVGLSSP 578 (1693)
Q Consensus 507 ~~~~~--~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~-~~-----~~~~~l~~~r~l~G~~~g~~~~ 578 (1693)
..... .........++.+++|+++||+|||+++.++.+.+.++..... .. .+++.+.+..+...++.|....
T Consensus 285 ~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gng 364 (462)
T PRK15034 285 DVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSG 364 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccch
Confidence 10000 0111123445678999999999999999888877766653322 22 2455555555444444444444
Q ss_pred HHHHHHHhccCc---------------------chhhHHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHH
Q psy10222 579 PSIVYIAESTEP---------------------RYRGAILAIVSLAISSGIFISHLLGTFL-----HWKTASAVCALFPF 632 (1693)
Q Consensus 579 ~~~~~~~E~~p~---------------------~~Rg~~~~~~~~~~~lG~~~~~~~~~~~-----~wr~~~~~~~~~~~ 632 (1693)
..+-++....|+ ++-|.+.++......+|..+.|.+.+.. ++...+....+..+
T Consensus 365 svfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~ 444 (462)
T PRK15034 365 STFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYI 444 (462)
T ss_pred HHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 455455454442 1457777888888888777777543333 46666776666666
Q ss_pred HHHHHhhc
Q psy10222 633 ISCIFVYS 640 (1693)
Q Consensus 633 i~~~~~~~ 640 (1693)
+++...++
T Consensus 445 ~~~~~~w~ 452 (462)
T PRK15034 445 VCVLLTWL 452 (462)
T ss_pred HHHHHHHH
Confidence 66655443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.4e-18 Score=213.72 Aligned_cols=400 Identities=13% Similarity=0.076 Sum_probs=237.8
Q ss_pred hhhhhhhhhhhhhhh-hhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhh-chhHHHHHHHHHHHHHHHHHHHh
Q psy10222 1242 LAAGSAGAYSAVLLP-QLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEM-YGRRLTNLVLCIPFIMGWVIISL 1319 (1693)
Q Consensus 1242 ~~~~~~~~~~~~~lp-~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr-~GRr~~ll~~~~l~~i~~ll~~~ 1319 (1693)
+...+........++ .++ +++|.+.++.+|+.+.|.....+..+++|+++|| +|||++++.+.+++.++++.+++
T Consensus 24 ~~er~~~y~~~~~l~~yl~---~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~ 100 (489)
T PRK10207 24 LWERFGYYGVQGILAVFFV---KQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGM 100 (489)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 334444443333333 334 3789999999999999999999999999999999 99999999999999999999999
Q ss_pred hhhHHH-HHHHHHHHhhhhhchhhhHhHHhhhccCCC--cchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhH
Q psy10222 1320 ATEVWV-ILAGRFLTGFALGLSSPVALVYIAETTEPK--YRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCA 1392 (1693)
Q Consensus 1320 a~~~~~-lli~R~l~Gig~g~~~~~~~~~i~e~~p~~--~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~ 1392 (1693)
+++... +.++|+++|+|.|...+...++++|.+|++ +|+++.+++..+.++|.++||.+++++ |||+.|++..
T Consensus 101 ~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~ 180 (489)
T PRK10207 101 SLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCG 180 (489)
T ss_pred hccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 987554 558999999999999999999999999887 457889999999999999999998887 9999999875
Q ss_pred HHHHHHHHHhccccCChHHH--HhcC-CHHHHHHHH------------HHHhCCCCchHHHHHHHHHHhhhhcccccchh
Q psy10222 1393 LFPCASFIFAYFTPESPPWL--ASKG-FTVQAQQAF------------YWLRGHTAESEFEFKSMLNHAERSTITKSENM 1457 (1693)
Q Consensus 1393 i~~~v~lv~~~~lpEsp~~l--~~~~-~~~~a~~~l------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1457 (1693)
+..++.++...+.++..+-. ..++ +.|.....+ ..... ..+............... ..
T Consensus 181 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~------~f 253 (489)
T PRK10207 181 AGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMH-NVEVANLVLIVLSIVVTI------IF 253 (489)
T ss_pred HHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHH------HH
Confidence 43322222222232111000 0001 011100000 00000 000000000000000000 00
Q ss_pred hhhhhhhhhhHhhcccCchHHHHHHHHHH--HHHHhhhhHHHHHhHHHHHhh-c-----CCCchhHHHHHHHHHHHHHHH
Q psy10222 1458 TDKKKKLEWKKNILCTEFLKPLAIILVFF--FVQQFSGLNTLIFYTVGISKE-V-----SPDVNEYTATIVIDIVRVVMA 1529 (1693)
Q Consensus 1458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~-~-----g~s~~~~~~~~~~~i~~~ig~ 1529 (1693)
..++.+ ..+.++ ++.+....+. ....+..+....+..+.+.++ . |+............+..++..
T Consensus 254 ~~~~~~--~~~~~r-----~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~ 326 (489)
T PRK10207 254 FREAFK--LDKTGR-----NKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVAS 326 (489)
T ss_pred HHHHhc--CCHHHH-----HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHH
Confidence 000000 001222 2222222211 111222233333444444443 2 222222333333445566777
Q ss_pred HHHHHhhhhcCChh-------HHHHHHHHHHHHHHHHHHHHH--Hhhc-cCchHHHHHHHHHHHHHHHhhccccchhhcc
Q psy10222 1530 FVTCGLLRIFGRRP-------LALLSCLGTCLSLLGVASILK--FMQG-LLPSFMPVILLMFYMVFVSIGLQQLPWMMIG 1599 (1693)
Q Consensus 1530 ~~~g~l~dr~grr~-------~l~~~~~~~~i~~~~~~~~~~--~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 1599 (1693)
++.+++.||+++|+ ...+|.++.+++.+.+ .... .... ...+.+.++...+..+.+.....+....++.
T Consensus 327 pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~-~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~ 405 (489)
T PRK10207 327 PILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTA-AAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIA 405 (489)
T ss_pred HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHH-HHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 77889999999886 3666777766665443 1111 1111 1222333444555556666667777788888
Q ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcCcchhHHHHHHHHHHHHHHHhhh
Q psy10222 1600 ELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFL----------SIGTPETFGLYGCITAFGFVFLYIF 1659 (1693)
Q Consensus 1600 e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~----------~~g~~~~f~i~~~~~ll~~v~~~~~ 1659 (1693)
+..|++.++.++|+.+..+.+|+.++..+...... ...+.+.|...+..+++..++.++.
T Consensus 406 ~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~ 475 (489)
T PRK10207 406 ALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM 475 (489)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999877754321 1123455666666666666655443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-19 Score=219.92 Aligned_cols=309 Identities=17% Similarity=0.106 Sum_probs=215.8
Q ss_pred HhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHHHHH
Q psy10222 305 SAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCVGR 384 (1693)
Q Consensus 305 ~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~~R 384 (1693)
....+|.+.++ +|.++.+.++..+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|
T Consensus 27 ~~p~~~~i~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 103 (394)
T PRK11652 27 YVPAIADMARD---LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAAS 103 (394)
T ss_pred HhccHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 33456666666 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC-------------CC
Q psy10222 385 FLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG-------------PL 451 (1693)
Q Consensus 385 ~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~-------------~~ 451 (1693)
+++|++.+...+....++.|++++++|++++++.+.+..+|..++|++++++.+..|||+.|++. ..
T Consensus 104 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 183 (394)
T PRK11652 104 AIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWM 183 (394)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999888888899999999999999999999999999999999999999999999888764 11
Q ss_pred cccccccccCcc--cccccccchhhHHHHHHHHHHHHHH-hhhhhhhhhhhcccc-cccCCCC---cccccchhHHHHHH
Q psy10222 452 PQRSYLHLGNRL--FSFSYLTGYCLFQLLAAAGPIFATL-GSGMTSGFSAVLLPQ-LESANST---IPITPEDGSWIACV 524 (1693)
Q Consensus 452 p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~-~~~~~~~---~~~~~~~g~~iG~~ 524 (1693)
|+.+....++.. ...+... +.+.........+..+ ...........++.+ ++.+... +......+.++|++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~ 261 (394)
T PRK11652 184 PETRPADARRTRVLASYRTLL--SNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAW 261 (394)
T ss_pred CccCccccchhHHHHHHHHHH--cChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 111110000000 0000011 1111111111111111 111111111222222 1111111 12223456677888
Q ss_pred HHHHhhhhhchhHHHHHHH-HHHHHHHHHHHh--cchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHH
Q psy10222 525 LSCILMDLYGRRFTNLILC-VPFVLGWVIMSM--ATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVS 601 (1693)
Q Consensus 525 ~~G~lsDr~GRk~~l~~~~-~~~~i~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~ 601 (1693)
+.+++.||+||+....... ....+....... ..+.+.+..+.++.|++.+...+....+..|..| +++|...++.+
T Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~ 340 (394)
T PRK11652 262 FAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLG 340 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHH
Confidence 8888888888443332222 222222112222 2356677788899999999999999999999887 67899999999
Q ss_pred HHHHHHHHHHHHhhhhhh
Q psy10222 602 LAISSGIFISHLLGTFLH 619 (1693)
Q Consensus 602 ~~~~lG~~~~~~~~~~~~ 619 (1693)
....+|..+++.+++...
T Consensus 341 ~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 341 GLQNIGSGLAALLSAMLP 358 (394)
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 999999999998887763
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=205.25 Aligned_cols=357 Identities=13% Similarity=0.161 Sum_probs=230.4
Q ss_pred hhhhhhhhhhhhcCCCCccCCcch-hHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q psy10222 1248 GAYSAVLLPQLESANSTIPITPED-GTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVI 1326 (1693)
Q Consensus 1248 ~~~~~~~lp~i~~~~~~~~is~~~-~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~~~~~l 1326 (1693)
....+.+.|.+.+ |+|+|++| .+.+.++++.++++++++.|.++||+|-|+++..+.+.+++.+++.++++++..+
T Consensus 42 R~n~s~a~p~L~~---elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L 118 (511)
T TIGR00806 42 RPGESFITPYLLT---VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHM 118 (511)
T ss_pred hchHHHHHHHHHH---HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788885 89999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc---hhHHHHHHhHH---HHHHHHH
Q psy10222 1327 LAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL---HWKTTSAVCAL---FPCASFI 1400 (1693)
Q Consensus 1327 li~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l---~WR~~f~i~~i---~~~v~lv 1400 (1693)
.+.|++.|++.|+.. ....++..|+|+++|+++.+++..+..+|.++++++++.+ +||+.+.++-+ .-.+.++
T Consensus 119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~ 197 (511)
T TIGR00806 119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVF 197 (511)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999998877 89987755533 3344455
Q ss_pred HhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHH
Q psy10222 1401 FAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLA 1480 (1693)
Q Consensus 1401 ~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1480 (1693)
..+++|..+|-+.-+++.++-.+.........++.. .+.. ...+..........+..++. .+..+.+
T Consensus 198 ~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~---------~~~~---~~~~~~~~~~~~~l~~~~~~-~y~n~~v 264 (511)
T TIGR00806 198 LALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPG---------GKLE---DYLGTCRDSFLVRMLSELVT-IYRNPQL 264 (511)
T ss_pred HHHhCCCCchhhhhccccccccccccccccCCCCCc---------cccc---hhhhhhhhHHHHHHHHHHHH-HhcCcch
Confidence 667788554422222111000000000000000000 0000 00000000001111222211 2344556
Q ss_pred HHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC--chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHH
Q psy10222 1481 IILVFFFVQQFSGLNTLIFYTVGISKEVSPD--VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLG 1558 (1693)
Q Consensus 1481 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s--~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~ 1558 (1693)
+-..+|+....++++.+..|...+.++...+ ...+..-.+..+.+.+.++..|++-.++.+-..+.++.....-+.++
T Consensus 265 l~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll 344 (511)
T TIGR00806 265 LLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLV 344 (511)
T ss_pred hhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHh
Confidence 7778888888889999999998888776332 12233333444455666777788755553322333322222222111
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHH
Q psy10222 1559 VASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVK 1627 (1693)
Q Consensus 1559 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~ 1627 (1693)
.......+.|...+..+++...+.+....... -++.....+.-|...|+++++.-+-..+.+.
T Consensus 345 -----~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~-~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~ 407 (511)
T TIGR00806 345 -----FWMSQSHDIWVLYVTYVLFRGIYQFLVPIATF-QIASSLSKELCALVFGINTFVATALKTIITA 407 (511)
T ss_pred -----hhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccceEEEEecHHHHHHHHHHheEE
Confidence 12234456777777777777766655533332 2333334344477788888776655555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-19 Score=223.90 Aligned_cols=335 Identities=13% Similarity=0.001 Sum_probs=213.3
Q ss_pred hhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhc----chhHHHH
Q psy10222 306 AVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSA----TKVWLLC 381 (1693)
Q Consensus 306 ~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a----~s~~~ll 381 (1693)
....|.+.+ .|.++++.++..+.+.++..+++++.|++.||+|||+++..+.+++++++++++++ ++++.+.
T Consensus 47 ~~~~p~~~~----~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 122 (438)
T TIGR00712 47 ALAMPYLVE----QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMF 122 (438)
T ss_pred HhhhHHHHH----cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHH
Confidence 345565543 58999999999999999999999999999999999999999999999999998875 4677888
Q ss_pred HHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccc-cccCeEEEeecC-----------
Q psy10222 382 VGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPT-VRHLGLVMALVG----------- 449 (1693)
Q Consensus 382 ~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~-~~~gWr~~f~i~----------- 449 (1693)
+.|+++|++.|..+++..+.+.|++|+++||+++|+.+.+..+|..++|++.+... +..|||+.|++.
T Consensus 123 ~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~ 202 (438)
T TIGR00712 123 VLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFA 202 (438)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876543 457999988764
Q ss_pred --CCcccccc---cc-c-Ccc-------ccccc-c--c------chhhHHHHHH-HHHHHHHHhhhhhhhhhhhcccccc
Q psy10222 450 --PLPQRSYL---HL-G-NRL-------FSFSY-L--T------GYCLFQLLAA-AGPIFATLGSGMTSGFSAVLLPQLE 505 (1693)
Q Consensus 450 --~~p~~~~~---~~-~-~~~-------~~~~~-~--~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~ 505 (1693)
..++.+.. +. + .+. .+.+. . . ..+.+..... ....+..........+.+.++.+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~ 282 (438)
T TIGR00712 203 FAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVK 282 (438)
T ss_pred HHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHcc
Confidence 11111100 00 0 000 00000 0 0 0001111111 1111111111122233333333211
Q ss_pred cCC----CCcccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHH---HHHHHHHh--cchHHHHHHHHHHHHhhhhCC
Q psy10222 506 SAN----STIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFV---LGWVIMSM--ATEVWLICVGRFLTGLSVGLS 576 (1693)
Q Consensus 506 ~~~----~~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~---i~~~~~~~--~~~~~~l~~~r~l~G~~~g~~ 576 (1693)
..+ .........+.++|.+++|+++||+||++....+..... ++.+.... ..+.+...+..+..|++..+.
T Consensus 283 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 362 (438)
T TIGR00712 283 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGP 362 (438)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccH
Confidence 111 112223445677899999999999965432222222211 11111112 123344444455556554443
Q ss_pred hhHHHHHHHhccCcchhhHHHHHHHHHHHHH-HHHHHHhhhhh----hhHHHHHHhHHHHHHHHHH-hhcccCC
Q psy10222 577 SPPSIVYIAESTEPRYRGAILAIVSLAISSG-IFISHLLGTFL----HWKTASAVCALFPFISCIF-VYSTPES 644 (1693)
Q Consensus 577 ~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG-~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~-~~~lpES 644 (1693)
.........|..|++.||++.++.+....+| ..+++.+.+.+ +|...+.+.....+++++. ...+||.
T Consensus 363 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (438)
T TIGR00712 363 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE 436 (438)
T ss_pred HHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333456789999999999999998877765 46677665544 6888877766665555444 3445653
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=195.50 Aligned_cols=349 Identities=16% Similarity=0.190 Sum_probs=213.0
Q ss_pred CCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhH
Q psy10222 1267 ITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALV 1346 (1693)
Q Consensus 1267 is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~ 1346 (1693)
.+..-.|.+.|.|.++..+.++.||.++||+|||++++.|+....+..++.+++.|+..++++|++.|+.-|- ..++.+
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~rA 143 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIRA 143 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHHH
Confidence 4555679999999999999999999999999999999999999999999999999997778889999998664 678899
Q ss_pred HhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhchh------HHHH----HHhHHHHHH-HHHHhccccCChHHHHhc
Q psy10222 1347 YIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFLHW------KTTS----AVCALFPCA-SFIFAYFTPESPPWLASK 1415 (1693)
Q Consensus 1347 ~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l~W------R~~f----~i~~i~~~v-~lv~~~~lpEsp~~l~~~ 1415 (1693)
+++|.+++++|++.++.+...+++|.++||.+|+++.- +.+| ++..+++.. .....+++||+-+ .+
T Consensus 144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~---~r 220 (451)
T KOG2615|consen 144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP---LR 220 (451)
T ss_pred HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc---ch
Confidence 99999999999999999999999999999999999821 1222 223333333 3344567899832 11
Q ss_pred CCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHH--HHHHHHHHHhhh
Q psy10222 1416 GFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAI--ILVFFFVQQFSG 1493 (1693)
Q Consensus 1416 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 1493 (1693)
++.++.....+. . +++ .+..+ .+.......+++++...+... .+.+..+.+..
T Consensus 221 k~~~~~~~~~~~-~----~~~---~~~~~----------------~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~- 275 (451)
T KOG2615|consen 221 KRNDEHSTLQEA-A----DDR---LALLK----------------FARIFKVAALRNPPLLDFISVLRIFGLHYFLYLE- 275 (451)
T ss_pred hhcccccchhhh-h----hhh---hhhcc----------------hhhhhhhhhhcCccccchHHHHHHHHHHHHHHHH-
Confidence 111111100000 0 000 00000 001111223333333221111 11111111111
Q ss_pred hHHHHHhHHHHH--hhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcC--ChhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10222 1494 LNTLIFYTVGIS--KEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFG--RRPLALLSCLGTCLSLLGVASILKFMQG 1568 (1693)
Q Consensus 1494 ~~~~~~~~p~~~--~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~g--rr~~l~~~~~~~~i~~~~~~~~~~~~~~ 1568 (1693)
.+....+.+..+ +..|++ .+.+......++.+.+....-.+..||.+ -+-.+..+...+.-..+.+ ..
T Consensus 276 l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~lll-------s~ 348 (451)
T KOG2615|consen 276 LFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLL-------SL 348 (451)
T ss_pred HHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHH-------hc
Confidence 111122222333 334666 66777777667766666666666666655 3333443333333222222 11
Q ss_pred cCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcchhHHHHHH
Q psy10222 1569 LLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSI-GTPETFGLYGC 1647 (1693)
Q Consensus 1569 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~-g~~~~f~i~~~ 1647 (1693)
...+.. +........+.....-+....++....|++.||+..|+....+.++-++||.+.+....+. +-+.++...+.
T Consensus 349 ~~~~~~-l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~ 427 (451)
T KOG2615|consen 349 ARTPVV-LYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGA 427 (451)
T ss_pred cccchh-hhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHH
Confidence 122222 2223333333333344445667788899999999999999999999999999998766542 33334444444
Q ss_pred HHHHH
Q psy10222 1648 ITAFG 1652 (1693)
Q Consensus 1648 ~~ll~ 1652 (1693)
+.+..
T Consensus 428 L~~~~ 432 (451)
T KOG2615|consen 428 LLLIP 432 (451)
T ss_pred HHHHH
Confidence 44443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=210.25 Aligned_cols=418 Identities=12% Similarity=0.055 Sum_probs=252.7
Q ss_pred hhhHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHH
Q psy10222 1227 RCDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVL 1306 (1693)
Q Consensus 1227 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~ 1306 (1693)
..+||..+....+.....+... ..+...|.+++ ++|+|..+.+++.++. ...+.++++.|+++||+|||++++++
T Consensus 23 e~~Rw~~lva~~~~~~~~g~~y-~fsv~s~~L~~---~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig 97 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTSFMY-AFNLISGAMQA---RYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLS 97 (591)
T ss_pred ccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---HhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 4456665555444444443333 22345566774 8999999999998874 34556788899999999999999999
Q ss_pred HHHHHHHHHHHHhh------hhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHH-HHHhh
Q psy10222 1307 CIPFIMGWVIISLA------TEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFT-AHLLG 1379 (1693)
Q Consensus 1307 ~~l~~i~~ll~~~a------~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~l-g~~lg 1379 (1693)
.+++.++.++++++ ++++.+.++|+++|+|.+...+.+...+.+++| ++||++.++...+.++|.++ +++..
T Consensus 98 ~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~ 176 (591)
T PTZ00207 98 MTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQL 176 (591)
T ss_pred HHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 689999999999999999999999999999996 78999999999999999975 55556
Q ss_pred hhc--hhHHHHHHhHHHHHHHHHHhcc---ccCChHHHHhcCCHHHHHHHHHHHhCCC------Cc--------------
Q psy10222 1380 TFL--HWKTTSAVCALFPCASFIFAYF---TPESPPWLASKGFTVQAQQAFYWLRGHT------AE-------------- 1434 (1693)
Q Consensus 1380 ~~l--~WR~~f~i~~i~~~v~lv~~~~---lpEsp~~l~~~~~~~~a~~~l~~~~~~~------~~-------------- 1434 (1693)
+++ +|++.|++.++++++..++... .|++|+|..++++.+++++..++.++.. +.
T Consensus 177 ~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~ 256 (591)
T PTZ00207 177 AFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILI 256 (591)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHH
Confidence 555 8999999888888776554433 4777777655655555544433322211 00
Q ss_pred ----------------hHHHHH--H--H---HHHh-----------h--h-hccc-ccch---------hhh-----hhh
Q psy10222 1435 ----------------SEFEFK--S--M---LNHA-----------E--R-STIT-KSEN---------MTD-----KKK 1462 (1693)
Q Consensus 1435 ----------------~~~~~~--~--~---~~~~-----------~--~-~~~~-~~~~---------~~~-----~~~ 1462 (1693)
...... . + ...+ . + +..+ +.+. .+. +.+
T Consensus 257 ~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (591)
T PTZ00207 257 VFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVD 336 (591)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCcccccccccccccccccccccccccccc
Confidence 000000 0 0 0000 0 0 0000 0000 000 000
Q ss_pred ---h---hhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc-CCC-ch--hHHHHHHHHHHHHHHHHHH
Q psy10222 1463 ---K---LEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEV-SPD-VN--EYTATIVIDIVRVVMAFVT 1532 (1693)
Q Consensus 1463 ---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~s-~~--~~~~~~~~~i~~~ig~~~~ 1532 (1693)
+ .+.++.+++.. .++.+...+ +..+.-..+....-++.+.. |.+ .. ........++++.+|-+..
T Consensus 337 ~~~P~~~~t~~q~l~~~d----~Wll~~~~~-cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~ 411 (591)
T PTZ00207 337 YIAPQFQETFIEGLKTAR----LWCLLWSIF-CCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCM 411 (591)
T ss_pred CCCCCCcchHHHHHhchh----HHHHHHHHH-HhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHH
Confidence 0 02333333322 233333333 33334445556677888877 663 12 1224556677777777777
Q ss_pred HHhhhhcCCh--------hHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCcc
Q psy10222 1533 CGLLRIFGRR--------PLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQ 1604 (1693)
Q Consensus 1533 g~l~dr~grr--------~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~ 1604 (1693)
|++.....|| +..+....++.++.+.+ ... .+.. .+.+..+..++......++....++|+|.
T Consensus 412 g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll----~~~---~p~~-~L~~~~~lvg~~~G~~~~~~~~i~selFg- 482 (591)
T PTZ00207 412 SYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTL----FLT---LPKA-ALPLPYFIAAFANGFMAATIALVTRTIFA- 482 (591)
T ss_pred HHHHHHHHhhccccccchhHHHHHHHHHHHHHHHH----HHH---CCcc-HhHHHHHHHHHHhhHhHHHHHHHHHHHhc-
Confidence 7766222222 12222122233333322 111 1111 12222223333333344556677899999
Q ss_pred chhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc-------------CcchhHHHHHHHHHHHHHHHhhhccCCC
Q psy10222 1605 ATRELGSGISTCFAFLTLFVV-VKTGPLLFLSI-------------GTPETFGLYGCITAFGFVFLYIFLPETK 1664 (1693)
Q Consensus 1605 ~~r~~a~g~~~~~~~lg~~i~-~~~~~~l~~~~-------------g~~~~f~i~~~~~ll~~v~~~~~~~et~ 1664 (1693)
+.-|+=.-+.....-+|+.+. -.+++.++|.- -++.+|.++++++.++.+....+.-++|
T Consensus 483 k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 483 KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 666666666666666666665 45667777632 1567999999999999888766555555
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=214.99 Aligned_cols=334 Identities=16% Similarity=0.036 Sum_probs=223.7
Q ss_pred HhhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCc----hhHHHHHHHHHHHHHH
Q psy10222 295 DFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRR----FSNLILCIPFVLGWII 370 (1693)
Q Consensus 295 ~~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr----~vl~~~l~~~~~~s~l 370 (1693)
.+..+.+.......+|...++ +|.|.+++|+..+.+.+...+++++.|++.||+||| +.+.++..+. +...
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~---~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~ 87 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKG---QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAF 87 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHh---cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHH
Confidence 344444444444445555555 999999999999999999999999999999999994 3333332222 2334
Q ss_pred HHhcchhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC-
Q psy10222 371 ISSATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG- 449 (1693)
Q Consensus 371 ~~~a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~- 449 (1693)
+..++++|.+++.|+++|++.+...|...+++.++ +++|++++|.......+|.++||++++++.+++|||.+|++.
T Consensus 88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~ 165 (382)
T PRK11128 88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILT 165 (382)
T ss_pred HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence 55678999999999999999999999988888877 467899999999999999999999999999999999888754
Q ss_pred -----------CCcccccccccCccc---ccccccchhhHHHHHHHH-HHHHHHhhhhhhhhhhhcccccccCCCCccc-
Q psy10222 450 -----------PLPQRSYLHLGNRLF---SFSYLTGYCLFQLLAAAG-PIFATLGSGMTSGFSAVLLPQLESANSTIPI- 513 (1693)
Q Consensus 450 -----------~~p~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 513 (1693)
..|+.+....+.+.. ..+.....+.+..+.... ..+............+.+..+.+.+......
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~ 245 (382)
T PRK11128 166 AGVASMLLGQLLRPTIMPQGESRQQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYL 245 (382)
T ss_pred HHHHHHHHHHHccCCCCCccccccccccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHH
Confidence 111111000000000 000111111222222111 2222222222222233333322211111111
Q ss_pred --ccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcc
Q psy10222 514 --TPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPR 591 (1693)
Q Consensus 514 --~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~ 591 (1693)
....+.+++.++.|++.||+|+|+.+..+.+...++.++..+.++.+++++..++.|++.+...+....+..+. +++
T Consensus 246 ~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~ 324 (382)
T PRK11128 246 WSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGS 324 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHh
Confidence 12234556678899999999999999999888888887777888999999999999999998888888898887 566
Q ss_pred hhhHHHHHHH-HHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHH
Q psy10222 592 YRGAILAIVS-LAISSGIFISHLLGTFL----HWKTASAVCALFPFISCIF 637 (1693)
Q Consensus 592 ~Rg~~~~~~~-~~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~ 637 (1693)
++++..+..+ ....+|..+++.+++.+ ++ ..+...++..+++++.
T Consensus 325 ~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 325 EVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALFI 374 (382)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 6788888776 55567778888877766 44 3455555555554443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.9e-18 Score=205.81 Aligned_cols=323 Identities=12% Similarity=0.062 Sum_probs=218.6
Q ss_pred hhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhc-----hhHHH-HHHHHHHHHHHHHHHHhh--
Q psy10222 1249 AYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMY-----GRRLT-NLVLCIPFIMGWVIISLA-- 1320 (1693)
Q Consensus 1249 ~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~-----GRr~~-ll~~~~l~~i~~ll~~~a-- 1320 (1693)
...++++|.+.+ |+++|.++.++..+. .+...+ .+++|+++||+ |||+. ++.+.++..+.....++.
T Consensus 5 ~~~~~~~~~~~~---~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~ 79 (356)
T TIGR00901 5 GLVGNTLPYWLR---SKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP 79 (356)
T ss_pred hhHHhHHHHHHH---HcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc
Confidence 455677888886 789999999999766 444454 89999999998 89887 567788888887777787
Q ss_pred -hhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----h--------hHHH
Q psy10222 1321 -TEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----H--------WKTT 1387 (1693)
Q Consensus 1321 -~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~--------WR~~ 1387 (1693)
.+.+.+.+..++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+ + ||..
T Consensus 80 ~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~ 159 (356)
T TIGR00901 80 STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYI 159 (356)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHH
Confidence 56677888888999999999999999999999999999999999999999999999988766 6 9999
Q ss_pred HHHhHHHHHHHHHHhcc-ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhh
Q psy10222 1388 SAVCALFPCASFIFAYF-TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEW 1466 (1693)
Q Consensus 1388 f~i~~i~~~v~lv~~~~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1466 (1693)
|++.++..++..+..++ .||+++. +. +.+++. ++.....
T Consensus 160 f~i~ai~~l~~~~~~~~~~~e~~~~---~~-----------------~~~~~~--------------------~~~~~~~ 199 (356)
T TIGR00901 160 FFWTALLILPGLLVTLFLAKEPQED---AS-----------------VPKPLT--------------------QAVLKPI 199 (356)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcc---cc-----------------cchhHH--------------------HHHHHHH
Confidence 99999887776655554 5775310 00 000000 0001122
Q ss_pred hHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHH-HHHHHHHHHHHHhhhhcCChhH
Q psy10222 1467 KKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVID-IVRVVMAFVTCGLLRIFGRRPL 1544 (1693)
Q Consensus 1467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~-i~~~ig~~~~g~l~dr~grr~~ 1544 (1693)
++.++++..+ +........+... ...+....+.|.+.++.|++ .+.+......+ +..+++.++++++.||+|||+.
T Consensus 200 ~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~ 277 (356)
T TIGR00901 200 REFFQRKNMI-QALLLLLLIVLYK-LGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYA 277 (356)
T ss_pred HHHHHhcCch-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3334443311 1222222222222 23444556667766667777 44444444444 5678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC----chHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHH
Q psy10222 1545 ALLSCLGTCLSLLGVASILKFMQGLL----PSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAF 1619 (1693)
Q Consensus 1545 l~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~ 1619 (1693)
+..+.++.++....+ .......... +..+......+...+......+...++.+|.+|++.|++..|+.+...+
T Consensus 278 l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 278 LLLFGIVQALTNAGF-VWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHHH-HHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 888877776655444 2211110000 1222222233333444445566677899999999999999999887654
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-19 Score=219.18 Aligned_cols=304 Identities=13% Similarity=0.024 Sum_probs=203.3
Q ss_pred hhhhhhHhhhhHH-hhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcc-h
Q psy10222 299 GTAVGFSAVLLPQ-LQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSAT-K 376 (1693)
Q Consensus 299 ~l~~~~~~~~~P~-l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~-s 376 (1693)
...........|. +.++ +|++..+.+++.+.+.+++++++++.|++.||+|||+++..+.++++++.+++++++ +
T Consensus 14 ~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~ 90 (366)
T TIGR00886 14 FSVWFAFSPLAVQMIKDD---LGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQS 90 (366)
T ss_pred HHHHHHhHHhhhHHHHHH---hCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3334445567774 7677 999999999999999999999999999999999999999999999999999999999 9
Q ss_pred hHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhccccc----------ccCeEEEe
Q psy10222 377 VWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTV----------RHLGLVMA 446 (1693)
Q Consensus 377 ~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~----------~~gWr~~f 446 (1693)
++.+++.|+++|++.+ .++++.++++|++|+++|++++++......+|..+++.+++.+.. +.+||+.|
T Consensus 91 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~ 169 (366)
T TIGR00886 91 YSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAF 169 (366)
T ss_pred HHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchh
Confidence 9999999999999965 467788999999999999999999997777777666666655443 35899998
Q ss_pred ec-C-------------CCcccccccccCccccc-------------ccccchhhHHHHHHHHH-HHHHHhhhhhhhhhh
Q psy10222 447 LV-G-------------PLPQRSYLHLGNRLFSF-------------SYLTGYCLFQLLAAAGP-IFATLGSGMTSGFSA 498 (1693)
Q Consensus 447 ~i-~-------------~~p~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 498 (1693)
++ . ..++......++++.+. ......+.+..+..... ............+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (366)
T TIGR00886 170 VIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFA 249 (366)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 33 1 11111000000000000 00000111111111111 111111112223333
Q ss_pred hccccc-ccCCC---CcccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHh--cc--hHHHHHHHHHHHH
Q psy10222 499 VLLPQL-ESANS---TIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSM--AT--EVWLICVGRFLTG 570 (1693)
Q Consensus 499 ~~l~~~-~~~~~---~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~--~~--~~~~l~~~r~l~G 570 (1693)
.++.+. +.+.. .+......+.++|.+++|+++||+|||+.+..+......+..+..+ .+ +.+.+.+...+.+
T Consensus 250 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (366)
T TIGR00886 250 MFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALF 329 (366)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 333221 11111 1222334466788999999999999988777776666555544443 22 5555566666667
Q ss_pred hhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHH
Q psy10222 571 LSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSG 607 (1693)
Q Consensus 571 ~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG 607 (1693)
++.|........+..|..| ++||...++.+...++|
T Consensus 330 ~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 330 FFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 7777777778888888887 69999999988776654
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-18 Score=216.51 Aligned_cols=306 Identities=13% Similarity=0.061 Sum_probs=215.2
Q ss_pred hhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccc-cCCchhHHHHHHHHHHHHHHHHhcchhHHH-HHHH
Q psy10222 307 VLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDS-CGRRFSNLILCIPFVLGWIIISSATKVWLL-CVGR 384 (1693)
Q Consensus 307 ~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~-~Grr~vl~~~l~~~~~~s~l~~~a~s~~~l-l~~R 384 (1693)
.+...+.++ +|.+.++.+|+.+.|.....+..++.|+++|| +||||+++.+.+++++++++++++++...+ +++|
T Consensus 36 ~l~~yl~~~---lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~ 112 (489)
T PRK10207 36 ILAVFFVKQ---LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIAL 112 (489)
T ss_pred HHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 344445555 89999999999999998888889999999999 999999999999999999999999876664 4799
Q ss_pred HHHhhhccccchhhhhhhccccCcc--cchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecCC------------
Q psy10222 385 FLTGLSIGFLTPPAIVYIAETSEPK--YRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVGP------------ 450 (1693)
Q Consensus 385 ~l~Gig~g~~~~~~~a~i~~~~p~~--~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~~------------ 450 (1693)
+++|+|.|...|...++++|+||++ ||+++.+++.++.++|..+||.+++++.+++|||+.|++..
T Consensus 113 ~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~ 192 (489)
T PRK10207 113 GTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFA 192 (489)
T ss_pred HHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887 45889999999999999999999999999999999998750
Q ss_pred Cc---ccc-cccccCccccc-c---------------------------------------------cccchhhHHHHHH
Q psy10222 451 LP---QRS-YLHLGNRLFSF-S---------------------------------------------YLTGYCLFQLLAA 480 (1693)
Q Consensus 451 ~p---~~~-~~~~~~~~~~~-~---------------------------------------------~~~~~~~~~~~~~ 480 (1693)
.+ ... ..+.+. +.+. . +..+..+.+.+..
T Consensus 193 ~~~~~~~~~~~~~~~-~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~~~~r~r~~~~ 271 (489)
T PRK10207 193 CRGMVKDIGSEPDHK-PMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLDKTGRNKMFVA 271 (489)
T ss_pred cchhhcccCCCCCcc-chhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 00 000 000000 0000 0 0000001111111
Q ss_pred HHHH---HHH-Hhhhhhhhhhhhcccc-cccCCCCccc-------ccchhHHHHHHHHHHhhhhhchhH-------HHHH
Q psy10222 481 AGPI---FAT-LGSGMTSGFSAVLLPQ-LESANSTIPI-------TPEDGSWIACVLSCILMDLYGRRF-------TNLI 541 (1693)
Q Consensus 481 ~~~~---~~~-~~~~~~~~~~~~~l~~-~~~~~~~~~~-------~~~~g~~iG~~~~G~lsDr~GRk~-------~l~~ 541 (1693)
.... ... ..+.......+.+.++ .......+.. .+....++.+++.+++.||+|||+ -+.+
T Consensus 272 ~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~ 351 (489)
T PRK10207 272 FVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTL 351 (489)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 1100 000 0011111111111221 1111111111 122456678888999999999886 3556
Q ss_pred HHHHHHHHHHHH-----Hhc-----chHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHH
Q psy10222 542 LCVPFVLGWVIM-----SMA-----TEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFIS 611 (1693)
Q Consensus 542 ~~~~~~i~~~~~-----~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~ 611 (1693)
+.++.+++.+.. .+. .++++++..-++.|+|.+...++...++.+.+|++.+|.++++.++..++|..++
T Consensus 352 G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg 431 (489)
T PRK10207 352 GMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLG 431 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665554322 121 3577788899999999999999999999999999999999999999999999998
Q ss_pred HHhhh
Q psy10222 612 HLLGT 616 (1693)
Q Consensus 612 ~~~~~ 616 (1693)
..++.
T Consensus 432 ~~l~~ 436 (489)
T PRK10207 432 GYVAT 436 (489)
T ss_pred HHHHH
Confidence 87764
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-18 Score=219.59 Aligned_cols=343 Identities=13% Similarity=0.097 Sum_probs=233.1
Q ss_pred hhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhcccc-----CCchh-HHHHHHHHHHHHH
Q psy10222 296 FSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSC-----GRRFS-NLILCIPFVLGWI 369 (1693)
Q Consensus 296 ~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~-----Grr~v-l~~~l~~~~~~s~ 369 (1693)
+..++........+|...++ .|.+.++++.. +.....+ +..+++|+++||+ ||||. ++.+.++.+++..
T Consensus 22 ~~~gl~~~~~~~~l~~~l~~---~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~ 96 (491)
T PRK11010 22 FASGLPLALTSGTLQAWMTV---ENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIA 96 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHH
Confidence 34555555566666666666 78888888886 4444444 5899999999999 99986 6688888888888
Q ss_pred HHHhc---chhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhccccc-ccCeEEE
Q psy10222 370 IISSA---TKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTV-RHLGLVM 445 (1693)
Q Consensus 370 l~~~a---~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~-~~gWr~~ 445 (1693)
+++++ ++++.+.+.|+++|++.+...++..+++.|++|++|||++.|+.+.+..+|.++++.+++++.+ .+|||.+
T Consensus 97 ~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~ 176 (491)
T PRK11010 97 AMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGM 176 (491)
T ss_pred HHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHH
Confidence 88775 4788999999999999999999999999999999999999999999999999999999999988 5799999
Q ss_pred eecC------------CCcccccccccCccccc---cccc-ch-hhHHHHHHHHHHHHHHhhhhhhhhhhhcccc-cccC
Q psy10222 446 ALVG------------PLPQRSYLHLGNRLFSF---SYLT-GY-CLFQLLAAAGPIFATLGSGMTSGFSAVLLPQ-LESA 507 (1693)
Q Consensus 446 f~i~------------~~p~~~~~~~~~~~~~~---~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~ 507 (1693)
|++. ..|+.......++.... .... -. .+..+.......+..........+.++++.+ .+.+
T Consensus 177 f~i~a~l~ll~~l~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s 256 (491)
T PRK11010 177 YWLMAALLIPCIIATLLAPEPTDTIPVPKTLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFD 256 (491)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccccccccchhhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9774 11111100000000000 0000 00 1111222222222223333333444444322 2211
Q ss_pred CCCccc----ccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHH---HHhc-chHHHHHHHHHHHHhhhhCChhH
Q psy10222 508 NSTIPI----TPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVI---MSMA-TEVWLICVGRFLTGLSVGLSSPP 579 (1693)
Q Consensus 508 ~~~~~~----~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~---~~~~-~~~~~l~~~r~l~G~~~g~~~~~ 579 (1693)
...... ....+.++|++++|+++||+|||+.+.++.++..++.+. .+.. ++.+.+.+.-++..++.|...+.
T Consensus 257 ~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~ 336 (491)
T PRK11010 257 AGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAA 336 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 223477799999999999999988777655544443322 2232 34445555566666666666677
Q ss_pred HHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHhhcccC
Q psy10222 580 SIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL----HWKTASAVCALFPFISCIFVYSTPE 643 (1693)
Q Consensus 580 ~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~~~lpE 643 (1693)
..++.++.++++.+++..++.+...++|..+++.+.+.+ +|+..+.+..+.++++++...++++
T Consensus 337 ~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 337 FVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999887766555544 7999999988888888776665543
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.4e-19 Score=217.05 Aligned_cols=300 Identities=14% Similarity=0.142 Sum_probs=212.5
Q ss_pred hhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhcccc-----CCchh-HHHHHHHHHHHHHHHHhc
Q psy10222 301 AVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSC-----GRRFS-NLILCIPFVLGWIIISSA 374 (1693)
Q Consensus 301 ~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~-----Grr~v-l~~~l~~~~~~s~l~~~a 374 (1693)
-...++..+|.+.++ +|+|.++.++.... .+.+.+ .++.|++.||+ ||||. ++.+.++.++.+++.+++
T Consensus 3 ~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~ 77 (356)
T TIGR00901 3 PLGLVGNTLPYWLRS---KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL 77 (356)
T ss_pred CchhHHhHHHHHHHH---cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC
Confidence 345667788888888 99999999999655 455554 99999999998 89997 567888888888888888
Q ss_pred ---chhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccC--------eE
Q psy10222 375 ---TKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHL--------GL 443 (1693)
Q Consensus 375 ---~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~g--------Wr 443 (1693)
.+++.+...+++.|.+.+...++..+++.|++|+|||+++.|+.+.+..+|.++++++++++...+| ||
T Consensus 78 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr 157 (356)
T TIGR00901 78 VPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWG 157 (356)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccH
Confidence 4677788888899999999999999999999999999999999999999999999999999988888 99
Q ss_pred EEeecCC-------------CcccccccccCccc--cc-ccccc-hhhH---HHH-HHHHHHHHHHhhhhhhhhhhhccc
Q psy10222 444 VMALVGP-------------LPQRSYLHLGNRLF--SF-SYLTG-YCLF---QLL-AAAGPIFATLGSGMTSGFSAVLLP 502 (1693)
Q Consensus 444 ~~f~i~~-------------~p~~~~~~~~~~~~--~~-~~~~~-~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 502 (1693)
.+|++.. .++........+.. +. ..... .+.+ ... ......+..........+.+.++.
T Consensus 158 ~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 237 (356)
T TIGR00901 158 YIFFWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLL 237 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988651 11111000000000 00 00000 0111 111 111222222222233334444443
Q ss_pred ccccCCCCcccc----cchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhc-----------chHHHHHHHHH
Q psy10222 503 QLESANSTIPIT----PEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMA-----------TEVWLICVGRF 567 (1693)
Q Consensus 503 ~~~~~~~~~~~~----~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~-----------~~~~~l~~~r~ 567 (1693)
+.+.+....... ...+.++|.+++|++.||+|||+.+..+.++..+...+..+. ++.+.+....+
T Consensus 238 ~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (356)
T TIGR00901 238 DMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTIT 317 (356)
T ss_pred HcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHH
Confidence 322111111111 123566899999999999999999888887777665544432 34567778888
Q ss_pred HHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHH
Q psy10222 568 LTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAIS 605 (1693)
Q Consensus 568 l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~ 605 (1693)
+.+++.+...+...++..|.+|+++||+..++.+...+
T Consensus 318 l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 318 LEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999877654
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.3e-17 Score=203.75 Aligned_cols=410 Identities=13% Similarity=0.028 Sum_probs=252.1
Q ss_pred HhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhh-chhHHHHHHHHHHHHHHHHHH
Q psy10222 1239 TATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEM-YGRRLTNLVLCIPFIMGWVII 1317 (1693)
Q Consensus 1239 l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr-~GRr~~ll~~~~l~~i~~ll~ 1317 (1693)
+..+...+......+.+|..-...+++|.+..+.+++.+.+.++..++++++|+++|| +|||++++.+.++..++.++.
T Consensus 17 ~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~ 96 (475)
T TIGR00924 17 FVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFML 96 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666666643212389999999999999999999999999999999 899999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCc---chhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHH
Q psy10222 1318 SLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKY---RGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAV 1390 (1693)
Q Consensus 1318 ~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~---Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i 1390 (1693)
+++++++.+.++|++.|+|.|...+...++++|++|+++ |+.+.+++..+.++|.++||.+++++ +||+.|++
T Consensus 97 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~ 176 (475)
T TIGR00924 97 AMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNL 176 (475)
T ss_pred HhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 999999999999999999999999999999999998764 88899999999999999999999887 89999999
Q ss_pred hHHHHHHHHHHhccc----cCChHHHHhcCC-HHHHHHHHHH---------------HhCCCCchHHHHHHHHHHhhhhc
Q psy10222 1391 CALFPCASFIFAYFT----PESPPWLASKGF-TVQAQQAFYW---------------LRGHTAESEFEFKSMLNHAERST 1450 (1693)
Q Consensus 1391 ~~i~~~v~lv~~~~l----pEsp~~l~~~~~-~~~a~~~l~~---------------~~~~~~~~~~~~~~~~~~~~~~~ 1450 (1693)
.++..++..+...+. ++.|+ .+++ .++.++..++ ....+.................
T Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 252 (475)
T TIGR00924 177 AAVGMVIGLLTFFAGRHMLRDIGS---VPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVII- 252 (475)
T ss_pred HHHHHHHHHHHHHHcccccccCCC---CCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-
Confidence 876544443333222 22221 0000 0000000000 0000000000000000000000
Q ss_pred ccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc-C-----CCchhHHHHHHHHHH
Q psy10222 1451 ITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEV-S-----PDVNEYTATIVIDIV 1524 (1693)
Q Consensus 1451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g-----~s~~~~~~~~~~~i~ 1524 (1693)
.......++ ...+.-+++ . ++ .+.........+..+.......+.+.++. + ++...........+.
T Consensus 253 ----~~~~~~~~~-~~~~~~~~~-~-~~-~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~ 324 (475)
T TIGR00924 253 ----FFFRLAFKP-RLDAVARNK-M-YA-YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFW 324 (475)
T ss_pred ----HHHHHHHhc-cCCHHHHhH-H-HH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHH
Confidence 000000000 000000000 0 11 11112221122222333333344443332 2 222244555556666
Q ss_pred HHHHHHHHHHhhhhcCC-----hhHH--HHHHHHHHHHHHHHHHHHHHhhc--cCchHHHHHHHHHHHHHHHhhccccch
Q psy10222 1525 RVVMAFVTCGLLRIFGR-----RPLA--LLSCLGTCLSLLGVASILKFMQG--LLPSFMPVILLMFYMVFVSIGLQQLPW 1595 (1693)
Q Consensus 1525 ~~ig~~~~g~l~dr~gr-----r~~l--~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~ 1595 (1693)
.++..++..++..|.+| +... .+|.+..+++.... +....... ...+.+..+....+...+-....|...
T Consensus 325 iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~-~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~ 403 (475)
T TIGR00924 325 VVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTF-AASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGL 403 (475)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH-HHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHH
Confidence 66665554444344433 2333 56677766666555 22111111 123444455566666777778889989
Q ss_pred hhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhcc
Q psy10222 1596 MMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLP 1661 (1693)
Q Consensus 1596 ~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~~~ 1661 (1693)
.+..+..|++.|++..|+......+|..+++.+.....+..++...+...+.++++..++.++..|
T Consensus 404 ~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 404 SWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988887766667777777777777776666655443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-17 Score=208.62 Aligned_cols=325 Identities=16% Similarity=0.096 Sum_probs=218.3
Q ss_pred CCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhh----chh-HHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHH
Q psy10222 1263 STIPITPEDGTWIASMASLPTFIACILGSFLMEM----YGR-RLTNLVLCIPFIMGWVIISLATE------VWVILAGRF 1331 (1693)
Q Consensus 1263 ~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr----~GR-r~~ll~~~~l~~i~~ll~~~a~~------~~~lli~R~ 1331 (1693)
+++++++.+.+++.++..+..++..|+.|+++|| +|| |+.++.+...+.++.+++.++++ ...+++.++
T Consensus 28 ~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (437)
T TIGR00792 28 DVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYI 107 (437)
T ss_pred HccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 3789999999999999999999999999999997 687 55777888888888888887764 456788899
Q ss_pred HHhhhhhchhhhHhHHhhhcc-CCCcchhhhHHHHHHHHHHHHHHHHhhh-----------hchhHHHHHHhHHHHHHHH
Q psy10222 1332 LTGFALGLSSPVALVYIAETT-EPKYRGVLSALLCTAVAIGIFTAHLLGT-----------FLHWKTTSAVCALFPCASF 1399 (1693)
Q Consensus 1332 l~Gig~g~~~~~~~~~i~e~~-p~~~Rg~~~~l~~~~~~lG~~lg~~lg~-----------~l~WR~~f~i~~i~~~v~l 1399 (1693)
+.+++.+...+...++..|.. ++++|++..++.+.+..+|.++++.+.+ ..+||+.+++.+++.++..
T Consensus 108 ~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~ 187 (437)
T TIGR00792 108 LLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSL 187 (437)
T ss_pred HHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHH
Confidence 999998887777788889987 4689999999988888887766544322 1279999999998887766
Q ss_pred HHh-ccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHH
Q psy10222 1400 IFA-YFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKP 1478 (1693)
Q Consensus 1400 v~~-~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1478 (1693)
+.. ++.||.++. .+ ++ + ++ +.+.....++.++++.++.-
T Consensus 188 ~~~~~~~~e~~~~----~~-~~-------------~-------------~~---------~~~~~~~~~~l~~~~~~~~~ 227 (437)
T TIGR00792 188 IICFFGTKERYSE----IP-KN-------------I-------------EK---------KLSLKQIFKALFKNDQLLIL 227 (437)
T ss_pred HHHHcCCEecCCC----CC-cc-------------c-------------cc---------CCCHHHHHHHHhCCHHHHHH
Confidence 554 446776410 00 00 0 00 00011223444555443322
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhHHHHHhhc-CCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHH
Q psy10222 1479 LAIILVFFFVQQFSGLNTLIFYTVGISKEV-SPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLL 1557 (1693)
Q Consensus 1479 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~s~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~ 1557 (1693)
...... . .........+.+++.+.. +.............++.+++.++.+++.||+|||+....+....+++.+
T Consensus 228 ~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~ 302 (437)
T TIGR00792 228 CLAYLF-Y----NLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYL 302 (437)
T ss_pred HHHHHH-H----HHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 221111 1 112222333344444332 3223344455556788899999999999999999999888777766655
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCc-------cchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1558 GVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFP-------QATRELGSGISTCFAFLTLFVVVKTGP 1630 (1693)
Q Consensus 1558 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~a~g~~~~~~~lg~~i~~~~~~ 1630 (1693)
.+ . .. . .+.+. ........++......+..+++.+|..+ ++.+|.+.|+.+....++..+++.+.+
T Consensus 303 ~~-~---~~-~-~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g 375 (437)
T TIGR00792 303 IF-F---FA-G-SNLPL-ILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVG 375 (437)
T ss_pred HH-H---Hc-c-hhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 1 11 1 12222 2222233333333445666777777754 456799999999999999999999999
Q ss_pred HHHHhcCcc
Q psy10222 1631 LLFLSIGTP 1639 (1693)
Q Consensus 1631 ~l~~~~g~~ 1639 (1693)
.+.+..|+.
T Consensus 376 ~ll~~~G~~ 384 (437)
T TIGR00792 376 LILGIIGYV 384 (437)
T ss_pred HHHHHcCCC
Confidence 999887763
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-18 Score=223.87 Aligned_cols=297 Identities=15% Similarity=0.137 Sum_probs=211.4
Q ss_pred HHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHH
Q psy10222 1235 GGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGW 1314 (1693)
Q Consensus 1235 ~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ 1314 (1693)
+..++..+......+..+.++|.+++ +|++++.+.+++.+.|.++++++.++.|+++||+|||+.+.++.+++++++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek---~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ 112 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIER---RFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGS 112 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhh---hhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHH
Confidence 34445667777888999999999986 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh---------------------------------------------------hHHHHHHHHHHHhhhhhchhhh
Q psy10222 1315 VIISLAT---------------------------------------------------EVWVILAGRFLTGFALGLSSPV 1343 (1693)
Q Consensus 1315 ll~~~a~---------------------------------------------------~~~~lli~R~l~Gig~g~~~~~ 1343 (1693)
++.++.+ .+..++++|+++|+|.+..++.
T Consensus 113 ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~ 192 (633)
T TIGR00805 113 FLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPL 192 (633)
T ss_pred HHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhc
Confidence 9998874 2567889999999999999999
Q ss_pred HhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc-----h---------------------hHHHHHHhHHHHHH
Q psy10222 1344 ALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL-----H---------------------WKTTSAVCALFPCA 1397 (1693)
Q Consensus 1344 ~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l-----~---------------------WR~~f~i~~i~~~v 1397 (1693)
..+++.|++|+++|+++++++..+..+|+++|+++++++ + ||..|++.+++.++
T Consensus 193 ~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l 272 (633)
T TIGR00805 193 GISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALL 272 (633)
T ss_pred CchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988764 1 67778888888777
Q ss_pred HHHHhccccCC-hHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCch
Q psy10222 1398 SFIFAYFTPES-PPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFL 1476 (1693)
Q Consensus 1398 ~lv~~~~lpEs-p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1476 (1693)
..+..+++|+. |+.. ++.+.++.++. ...+.. + +. ........++.....+.+++++.++
T Consensus 273 ~~v~l~~~p~~lp~~~-~~~~~~~~~~~--~~~~~~-~-------------~~--~~~~~~~~~~~~~~~~~Ll~n~~f~ 333 (633)
T TIGR00805 273 TSIPFFFFPKALPKEG-KRVNVDVHETE--KLEKSE-D-------------KS--RKKNSDITKDFPKIIKRLLCNPIYM 333 (633)
T ss_pred HHHHHHhCccccCCcc-cccchhhhhhh--cccccc-c-------------cc--chhhhhhHHHHHHHHHHHHcCcHHH
Confidence 66655566654 3110 00000000000 000000 0 00 0000000112234456677776543
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHH-HHHHHHHHHHHhhhhcCC--hhHHHHHHHH
Q psy10222 1477 KPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDI-VRVVMAFVTCGLLRIFGR--RPLALLSCLG 1551 (1693)
Q Consensus 1477 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i-~~~ig~~~~g~l~dr~gr--r~~l~~~~~~ 1551 (1693)
...+ ..+......+.+..+.|.++++ .|.+ .+++.......+ +.+++.+++|+++||+++ |+.+.++...
T Consensus 334 ~~~l-----~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~ 408 (633)
T TIGR00805 334 LVIL-----AQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICL 408 (633)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHH
Confidence 3222 2222333466777888988875 4777 555555555554 567899999999999984 4566666665
Q ss_pred HHHHHHH
Q psy10222 1552 TCLSLLG 1558 (1693)
Q Consensus 1552 ~~i~~~~ 1558 (1693)
..++.+.
T Consensus 409 ~~~~~~~ 415 (633)
T TIGR00805 409 STLSYLL 415 (633)
T ss_pred HHHHHHH
Confidence 5555444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.2e-19 Score=204.50 Aligned_cols=151 Identities=14% Similarity=0.091 Sum_probs=141.2
Q ss_pred hhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcc
Q psy10222 296 FSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSAT 375 (1693)
Q Consensus 296 ~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~ 375 (1693)
..|-...+.+-.+.+.++.+ +|+++++.|.+.+.+.+.+.++.|++|+++||++||+++..|+.+|++++++++++.
T Consensus 43 lmny~Dr~~iagv~~~v~~~---fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~ 119 (493)
T KOG1330|consen 43 LMNYADRYTIAGVLKEVQTY---FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN 119 (493)
T ss_pred HHHHhhhhhhhhhhHHHHHh---cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH
Confidence 34555555566677888888 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccC-eEEEeecC
Q psy10222 376 KVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHL-GLVMALVG 449 (1693)
Q Consensus 376 s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~g-Wr~~f~i~ 449 (1693)
.||++++.|.+.|+|++...|.+.++++|.||.++|++++|+...+.++|..+|.+.|+.....-+ |||.|+..
T Consensus 120 ~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~ 194 (493)
T KOG1330|consen 120 HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGS 194 (493)
T ss_pred HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEee
Confidence 999999999999999999999999999999999999999999999999999999999999988766 99999986
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-18 Score=218.27 Aligned_cols=330 Identities=12% Similarity=0.008 Sum_probs=211.2
Q ss_pred hhhHHhhhcccc-CCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHH---hcchhH-HHH
Q psy10222 307 VLLPQLQSANST-IPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIIS---SATKVW-LLC 381 (1693)
Q Consensus 307 ~~~P~l~~~~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~---~a~s~~-~ll 381 (1693)
...|.++.+..+ +|+++.+.|++.+.+.++..+++++.|++.||+||||+++++..+++++..... .++... ..+
T Consensus 28 ~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (420)
T PRK09528 28 SWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNIL 107 (420)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333 899999999999999999999999999999999999999988777776654322 121111 112
Q ss_pred HHHHHHhhhccccchhhhhhhccccC--cccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC----------
Q psy10222 382 VGRFLTGLSIGFLTPPAIVYIAETSE--PKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG---------- 449 (1693)
Q Consensus 382 ~~R~l~Gig~g~~~~~~~a~i~~~~p--~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~---------- 449 (1693)
.+..+.|+..|..++.....+.+|.+ ++++|+++|.......+|..++|++++++.+ .+||.+|++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~ 186 (420)
T PRK09528 108 LGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVL 186 (420)
T ss_pred HHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHH
Confidence 22333344344444444444444443 3567889999999999999999999999865 5999888765
Q ss_pred ---CCcccccccc--c-C-ccccccc------ccchhhHHHHHHHHHHHHHHhhhhhhhhhhhcccccc-cCC---CCc-
Q psy10222 450 ---PLPQRSYLHL--G-N-RLFSFSY------LTGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQLE-SAN---STI- 511 (1693)
Q Consensus 450 ---~~p~~~~~~~--~-~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~---~~~- 511 (1693)
..++.+.... + . +...... ..+.+............ .........+.+.+..+.. ... ..+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 265 (420)
T PRK09528 187 LFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFLVLYVIGV-ACFYDVFDQQFPNFFASFFATPEQGTRVFG 265 (420)
T ss_pred HhcccccccchhhhccchhcccccccHHHHHHHccCCCeEeehHHHHHH-HHHHHHHHHHHHHHHHHHHhccCcchHHHH
Confidence 1111110000 0 0 0000000 00011111111111111 1111111112222322221 111 111
Q ss_pred --ccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccC
Q psy10222 512 --PITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTE 589 (1693)
Q Consensus 512 --~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p 589 (1693)
......+..++.+++|+++||+|||+.+..+.++..++..+..++++.+.+++.+++.|++.+...+....++.|..|
T Consensus 266 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 345 (420)
T PRK09528 266 YLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFD 345 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 112233556889999999999999999998888888888888888899999999999999988888888899999999
Q ss_pred cchhhHHHHH-HHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHh
Q psy10222 590 PRYRGAILAI-VSLAISSGIFISHLLGTFL----HWKTASAVCALFPFISCIFV 638 (1693)
Q Consensus 590 ~~~Rg~~~~~-~~~~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~ 638 (1693)
++.|+...+. .++...+|..+++.+.+.+ +|+..+.+.++..++..+..
T Consensus 346 ~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 399 (420)
T PRK09528 346 VRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLIS 399 (420)
T ss_pred ccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHH
Confidence 9999887655 6777888888888777665 79999988777666554433
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.2e-19 Score=217.66 Aligned_cols=324 Identities=15% Similarity=0.116 Sum_probs=224.7
Q ss_pred ccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHhhhcccc
Q psy10222 317 STIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATK--VWLLCVGRFLTGLSIGFL 394 (1693)
Q Consensus 317 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s--~~~ll~~R~l~Gig~g~~ 394 (1693)
..++++.+|-+++.+.+++++.+++++.|++.||+|-|+++..+.++.+++++++.++-+ ++.+++.|++||++.|..
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL 145 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence 348999999999999999999999999999999999999999999999999999988774 567789999999999999
Q ss_pred chhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccc-cCeEEEeecC----------------CCcccccc
Q psy10222 395 TPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVR-HLGLVMALVG----------------PLPQRSYL 457 (1693)
Q Consensus 395 ~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~-~gWr~~f~i~----------------~~p~~~~~ 457 (1693)
+|+...+.++|.|++||++..++..++..+|.+++.+++|++.+. +||+++|++. +.|..+..
T Consensus 146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~ 225 (466)
T KOG2532|consen 146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPN 225 (466)
T ss_pred HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence 999999999999999999999999999999999999999999998 9999999975 33443221
Q ss_pred ccc--------Ccc-cccccccchhhHHH---HHHHHHHHHHHhhhh----hhhhhhhcccccc----cCCCCcccccch
Q psy10222 458 HLG--------NRL-FSFSYLTGYCLFQL---LAAAGPIFATLGSGM----TSGFSAVLLPQLE----SANSTIPITPED 517 (1693)
Q Consensus 458 ~~~--------~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~l~~~~----~~~~~~~~~~~~ 517 (1693)
... .+. ...+.....+.++. ..........+++.. ...+.+.++.+.. .+++.++..+..
T Consensus 226 is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l 305 (466)
T KOG2532|consen 226 ISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFL 305 (466)
T ss_pred CCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHH
Confidence 100 000 00000011111111 222233333333333 3333333433221 122335566777
Q ss_pred hHHHHHHHHHHhhhhhch---------hHHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHhhhhCChhHH-HHHHHh
Q psy10222 518 GSWIACVLSCILMDLYGR---------RFTNLILCVPFVLGWVIMSMATE-VWLICVGRFLTGLSVGLSSPPS-IVYIAE 586 (1693)
Q Consensus 518 g~~iG~~~~G~lsDr~GR---------k~~l~~~~~~~~i~~~~~~~~~~-~~~l~~~r~l~G~~~g~~~~~~-~~~~~E 586 (1693)
.+++-.+++|+++||.-+ |..-.++....+++.+..++.++ .....+..+....+..+..... ..-..+
T Consensus 306 ~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~ 385 (466)
T KOG2532|consen 306 AMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQD 385 (466)
T ss_pred HHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhh
Confidence 888999999999998855 22223444445555555555442 1112222222222222222222 222223
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh-------hhHHHHHHhHHHHHHHHHHhhcc
Q psy10222 587 STEPRYRGAILAIVSLAISSGIFISHLLGTFL-------HWKTASAVCALFPFISCIFVYST 641 (1693)
Q Consensus 587 ~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~-------~wr~~~~~~~~~~~i~~~~~~~l 641 (1693)
. .|++-+..+++.|....+..+++|.+.+.+ .||.+|++.++..++..+...+.
T Consensus 386 ~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 386 I-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred c-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 2 568999999999999999999999887654 69999999998888776655443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-18 Score=210.99 Aligned_cols=317 Identities=15% Similarity=0.033 Sum_probs=222.9
Q ss_pred HHhhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHh
Q psy10222 294 GDFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISS 373 (1693)
Q Consensus 294 ~~~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~ 373 (1693)
..+..|......+.++|.++++ +|++..+.|++.+.+++++.++.++.|++.||+|||+++..++++++++.++...
T Consensus 11 ~f~~~G~~~~~~~~l~~~~~~~---~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~ 87 (410)
T TIGR00885 11 LFALWGFANDITNPMVPQFQQA---FTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWP 87 (410)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777888999888 9999999999999999999999999999999999999999999999999988654
Q ss_pred ---cchhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhccccc------------
Q psy10222 374 ---ATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTV------------ 438 (1693)
Q Consensus 374 ---a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~------------ 438 (1693)
.++++++++.|++.|+|.|...+....++.+..|+++|++.+++.+....+|..+||.+++.+..
T Consensus 88 ~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~ 167 (410)
T TIGR00885 88 AAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLD 167 (410)
T ss_pred HHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhh
Confidence 46899999999999999999999999999999999999999999999999999999999887642
Q ss_pred --------------ccCeEEEeecC--------------CCcccccccccCcccccc-c-ccchhhHHHHHHHHH-HHHH
Q psy10222 439 --------------RHLGLVMALVG--------------PLPQRSYLHLGNRLFSFS-Y-LTGYCLFQLLAAAGP-IFAT 487 (1693)
Q Consensus 439 --------------~~gWr~~f~i~--------------~~p~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~-~~~~ 487 (1693)
..+||++|.+. ..|+.+... ..+.+.. . ....+.+++...... .+..
T Consensus 168 ~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~f~yv 245 (410)
T TIGR00885 168 KLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSD--AKQISFSASLSRLARIRHYREGVIAQFFYV 245 (410)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc--cccccchhhHHHHHhChhHHHHHHHHHHHH
Confidence 24699988543 223211110 0000000 0 011112222221111 1111
Q ss_pred Hhhhhhhhhhhhcccccc-cCCCC----cccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHH
Q psy10222 488 LGSGMTSGFSAVLLPQLE-SANST----IPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLI 562 (1693)
Q Consensus 488 ~~~~~~~~~~~~~l~~~~-~~~~~----~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l 562 (1693)
........+...+..+.. ..... +......+..+|.++++++.||+++|+.+.+..+..++..++..+.++...
T Consensus 246 g~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~- 324 (410)
T TIGR00885 246 GVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG- 324 (410)
T ss_pred HHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-
Confidence 111111122222221110 00101 111122356789999999999999999988888888887777777666433
Q ss_pred HHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10222 563 CVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL 618 (1693)
Q Consensus 563 ~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~ 618 (1693)
....++.|++.+..+|..++...+..+++.+.....+ .+. .+|..+.|.+.+.+
T Consensus 325 ~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l-~~~-~~Gga~~p~l~G~~ 378 (410)
T TIGR00885 325 LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGL-VMA-IIGGGIVPPLQGFI 378 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHH-HhccchHHHHHHHH
Confidence 5667788888889999999999999987655333333 333 38888888776655
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-18 Score=242.78 Aligned_cols=296 Identities=16% Similarity=0.049 Sum_probs=210.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHH---HHhcchhHHHHHHHHHHhhhccccchhhh
Q psy10222 323 TEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWII---ISSATKVWLLCVGRFLTGLSIGFLTPPAI 399 (1693)
Q Consensus 323 ~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l---~~~a~s~~~ll~~R~l~Gig~g~~~~~~~ 399 (1693)
....+++.+.+.+++.+++++.|+++||+|||++++.+.++.++++++ +..++++++++++|+++|++.|...|+..
T Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 125 (1146)
T PRK08633 46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKY 125 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHH
Confidence 345789999999999999999999999999999999998776655554 44567899999999999999999999999
Q ss_pred hhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccc--------cC-eEEEeecC-------------CCcccccc
Q psy10222 400 VYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVR--------HL-GLVMALVG-------------PLPQRSYL 457 (1693)
Q Consensus 400 a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~--------~g-Wr~~f~i~-------------~~p~~~~~ 457 (1693)
++++|++|+++|++++|+.+++..+|.++||++++++.+. ++ |++.+.+. ..|+....
T Consensus 126 ~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1146)
T PRK08633 126 GIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAA 205 (1146)
T ss_pred hhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCC
Confidence 9999999999999999999999999999999999999776 23 33322221 11111110
Q ss_pred cccC--ccc--ccccc-c----chhhHHHHHH-HHHHHHHHhhhhhhhhhhhcccc-cccCCC----CcccccchhHHHH
Q psy10222 458 HLGN--RLF--SFSYL-T----GYCLFQLLAA-AGPIFATLGSGMTSGFSAVLLPQ-LESANS----TIPITPEDGSWIA 522 (1693)
Q Consensus 458 ~~~~--~~~--~~~~~-~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~----~~~~~~~~g~~iG 522 (1693)
.... +.. ..... . ....+.+... +...+..........+.+.++.+ ++.+.. .+......+.++|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g 285 (1146)
T PRK08633 206 APEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIG 285 (1146)
T ss_pred CcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 0000 000 00000 0 0011111111 11111111111222222222221 111111 1223344577889
Q ss_pred HHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHH
Q psy10222 523 CVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSL 602 (1693)
Q Consensus 523 ~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~ 602 (1693)
+++.|+++||+++++.+.++.++.+++.++..+..+.+.+++..++.|++.++..+...+++.|..|++.||++.++.++
T Consensus 286 ~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~ 365 (1146)
T PRK08633 286 SLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNF 365 (1146)
T ss_pred HHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHH
Confidence 99999999999999888888888888777777777888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhh
Q psy10222 603 AISSGIFISHLLGTFL 618 (1693)
Q Consensus 603 ~~~lG~~~~~~~~~~~ 618 (1693)
...+|..+++.++..+
T Consensus 366 ~~~lg~~~~~~~~~~l 381 (1146)
T PRK08633 366 LQNVGMLLFLALTTLF 381 (1146)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999887777665544
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=210.50 Aligned_cols=301 Identities=11% Similarity=0.051 Sum_probs=206.3
Q ss_pred HhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccc-cCCchhHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHh
Q psy10222 311 QLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDS-CGRRFSNLILCIPFVLGWIIISSAT-KVWLLCVGRFLTG 388 (1693)
Q Consensus 311 ~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~-~Grr~vl~~~l~~~~~~s~l~~~a~-s~~~ll~~R~l~G 388 (1693)
.+.++ +|++.++.++..+.+........++.|+++|| +|||+++..+.++++++.+++++++ +.+.++++|+++|
T Consensus 47 yl~~~---lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~g 123 (500)
T PRK09584 47 YLVKQ---LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIA 123 (500)
T ss_pred HHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34455 89999999998888776666677899999999 5999999999999999999999985 4666778999999
Q ss_pred hhccccchhhhhhhccccCccc--chhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecCC----------------
Q psy10222 389 LSIGFLTPPAIVYIAETSEPKY--RGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVGP---------------- 450 (1693)
Q Consensus 389 ig~g~~~~~~~a~i~~~~p~~~--rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~~---------------- 450 (1693)
+|.|...|...++++|++|+++ |+++.+++.++..+|..+||++++++.+.+|||+.|.+..
T Consensus 124 ig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~ 203 (500)
T PRK09584 124 VGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRW 203 (500)
T ss_pred HhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999998654 4568999999999999999999999999999999887651
Q ss_pred CcccccccccCcccccc----------------------------------------------cccchhhHHHHHHHHHH
Q psy10222 451 LPQRSYLHLGNRLFSFS----------------------------------------------YLTGYCLFQLLAAAGPI 484 (1693)
Q Consensus 451 ~p~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~ 484 (1693)
.++....+..+ +.+.. ......+.+....+...
T Consensus 204 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (500)
T PRK09584 204 VKQYGSKPDFE-PINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFAMKGAARRKMIVAFILM 282 (500)
T ss_pred hccCCCCCCcc-ccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 00000000000 00000 00000111111111111
Q ss_pred HHHHhhhhhhhhhhhccccc--ccCCC---Cc-------ccccchhHHHH----HHHHHHhhhhhchhHHHHHHHHHHHH
Q psy10222 485 FATLGSGMTSGFSAVLLPQL--ESANS---TI-------PITPEDGSWIA----CVLSCILMDLYGRRFTNLILCVPFVL 548 (1693)
Q Consensus 485 ~~~~~~~~~~~~~~~~l~~~--~~~~~---~~-------~~~~~~g~~iG----~~~~G~lsDr~GRk~~l~~~~~~~~i 548 (1693)
.....+.....-.+..+..+ ...+. .+ ...+....++. +.+++++.||++..+.+.++.++.++
T Consensus 283 ~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l 362 (500)
T PRK09584 283 LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSG 362 (500)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHH
Confidence 11111111111111111110 01110 11 11122233333 44457777777777788888999888
Q ss_pred HHHHHHhcch---------HHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhh
Q psy10222 549 GWVIMSMATE---------VWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLG 615 (1693)
Q Consensus 549 ~~~~~~~~~~---------~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~ 615 (1693)
+.+......+ .++++...++.|+|-+...|....++.+.+|++.||++++...+...+|..++..+.
T Consensus 363 ~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~ 438 (500)
T PRK09584 363 AFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVA 438 (500)
T ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877666544 568889999999999999999999999999999999999998877777777766554
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-18 Score=240.30 Aligned_cols=295 Identities=14% Similarity=0.060 Sum_probs=206.6
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHH---HHHHHHHHHHHHHhcchhHHHHHHHHHHhhhccccchhhhh
Q psy10222 324 EDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLI---LCIPFVLGWIIISSATKVWLLCVGRFLTGLSIGFLTPPAIV 400 (1693)
Q Consensus 324 ~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~---~l~~~~~~s~l~~~a~s~~~ll~~R~l~Gig~g~~~~~~~a 400 (1693)
...++..+.+++.+++.+++.|+++||+|||+++.. +.+.+.+..+++..++++++++++|+++|++.+...|+..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 346778889999999999999999999999997533 33444444455555689999999999999999999999999
Q ss_pred hhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC------------CCcccccccccCcc-ccc-
Q psy10222 401 YIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG------------PLPQRSYLHLGNRL-FSF- 466 (1693)
Q Consensus 401 ~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~------------~~p~~~~~~~~~~~-~~~- 466 (1693)
++.|++|+++|++++|+.+++..+|.++||+++|++....||++.|++. ..|.........+. ...
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNAAPDLKIDRNII 211 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCeeccchH
Confidence 9999999999999999999999999999999999999999999887332 11111100000000 000
Q ss_pred cc-----ccchhhHHHH-HHHHHHHHHHhhhhhhhhhhhccccc-ccCCC---CcccccchhHHHHHHHHHHhhhhhchh
Q psy10222 467 SY-----LTGYCLFQLL-AAAGPIFATLGSGMTSGFSAVLLPQL-ESANS---TIPITPEDGSWIACVLSCILMDLYGRR 536 (1693)
Q Consensus 467 ~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~---~~~~~~~~g~~iG~~~~G~lsDr~GRk 536 (1693)
.. ......+.++ ..+...+..+..+....+.+.++.+. +.... .+......|+++|+++.|+++|+.+++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~ 291 (1140)
T PRK06814 212 RSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITL 291 (1140)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceee
Confidence 00 0000111111 11111222222222333444443322 11111 123455568899999999999988876
Q ss_pred HHHHHHHHHHHHHHHHHHhc--------------------chHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHH
Q psy10222 537 FTNLILCVPFVLGWVIMSMA--------------------TEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAI 596 (1693)
Q Consensus 537 ~~l~~~~~~~~i~~~~~~~~--------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~ 596 (1693)
+.+..+.++..++.+...+. ++.+.+++..++.|++.+...+...+++.+.+|++.||++
T Consensus 292 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v 371 (1140)
T PRK06814 292 LYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARV 371 (1140)
T ss_pred eeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceee
Confidence 65555555444444333332 5677788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q psy10222 597 LAIVSLAISSGIFISHLLGTFL 618 (1693)
Q Consensus 597 ~~~~~~~~~lG~~~~~~~~~~~ 618 (1693)
.+..++...+|..+++.+.+.+
T Consensus 372 ~g~~~~~~~~~~~ig~~~~g~l 393 (1140)
T PRK06814 372 IAANNVLNAAFMVAGTIILALL 393 (1140)
T ss_pred eHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888776655
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-16 Score=198.43 Aligned_cols=357 Identities=16% Similarity=0.121 Sum_probs=249.8
Q ss_pred hhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh-----
Q psy10222 1246 SAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLA----- 1320 (1693)
Q Consensus 1246 ~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a----- 1320 (1693)
....+...+++.+.. +..-|+...+++.++..+...+.+++.|.++||+.||++++.+.++..+..+..++.
T Consensus 24 lG~~~~~va~~wlv~---~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~ 100 (524)
T PF05977_consen 24 LGDWMQTVALAWLVT---QLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGL 100 (524)
T ss_pred HHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 333344444444442 345588889999999999999999999999999999999999998887665555432
Q ss_pred hhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHHHH
Q psy10222 1321 TEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFPC 1396 (1693)
Q Consensus 1321 ~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~~ 1396 (1693)
.+.+.+++.-++.|++.+...|.-.+++.|+.|+++...+.++.+...++..++||.+||.+ |=.+.|+++++.-+
T Consensus 101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl 180 (524)
T PF05977_consen 101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFL 180 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999987 77888888876555
Q ss_pred HHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCch
Q psy10222 1397 ASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFL 1476 (1693)
Q Consensus 1397 v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1476 (1693)
+..+.....+..++ +++ ...+....++ +..++....++..
T Consensus 181 ~~i~~l~~~~~~~~----~~~---------------~~~e~~~~~l--------------------~~G~ryv~~~~~l- 220 (524)
T PF05977_consen 181 ISILALLRWKPPPP----PSS---------------LPRERFFSAL--------------------REGLRYVRSSPPL- 220 (524)
T ss_pred HHHHHHHHcccccc----ccc---------------cchhhhhhhH--------------------HHHHHHHhcchHH-
Confidence 44333333322110 000 0000000000 0111122222222
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc-CCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHH
Q psy10222 1477 KPLAIILVFFFVQQFSGLNTLIFYTVGISKEV-SPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCL 1554 (1693)
Q Consensus 1477 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i 1554 (1693)
+..+....+..+ ....+....|.+.++. +.+ ..-++.....+++.++|.++.+++.+|++++++...+.+..++
T Consensus 221 ~~~l~~~~~~~l----~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~ 296 (524)
T PF05977_consen 221 RSVLLRSFLFNL----FASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFAL 296 (524)
T ss_pred HHHHHHHHHHHH----hhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHH
Confidence 222222222111 1122334567776553 555 5667788889999999999999999999998888888877777
Q ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1555 SLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFL 1634 (1693)
Q Consensus 1555 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~ 1634 (1693)
+++.+ ...++.+......+..+...........+...+..|++.||++.++..+....+..+|..+.|.+.+
T Consensus 297 ~~~~l--------al~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 297 ALLLL--------ALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred HHHHH--------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555 1222233333333344444444455566778899999999999999999999999999999999999
Q ss_pred hcCcchhHHHHHHHHHHHHHHHh
Q psy10222 1635 SIGTPETFGLYGCITAFGFVFLY 1657 (1693)
Q Consensus 1635 ~~g~~~~f~i~~~~~ll~~v~~~ 1657 (1693)
..|.+.++.+.++..+++.++.+
T Consensus 369 ~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 369 HFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHH
Confidence 99998888877766666655554
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.3e-18 Score=210.00 Aligned_cols=333 Identities=11% Similarity=0.063 Sum_probs=217.2
Q ss_pred hhHhhhhHHhhhccc-cCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCC-chhHHHHHHHHHHHHHHHHhcchhHHH
Q psy10222 303 GFSAVLLPQLQSANS-TIPITTEDASWIASMAALPMAVACVLGCIAMDSCGR-RFSNLILCIPFVLGWIIISSATKVWLL 380 (1693)
Q Consensus 303 ~~~~~~~P~l~~~~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Gr-r~vl~~~l~~~~~~s~l~~~a~s~~~l 380 (1693)
...+..+|.+..+.. ++|.+.++.|++.+.+.++..+++++.|.++||+|| |+++.++.++.++++.+++++++++.+
T Consensus 16 ~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (418)
T TIGR00889 16 FIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGM 95 (418)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 333344444433332 289999999999999999999999999999999865 779999999999999999999999999
Q ss_pred HHHHHHHhhhccccchhhhhhhc--------cccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC---
Q psy10222 381 CVGRFLTGLSIGFLTPPAIVYIA--------ETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG--- 449 (1693)
Q Consensus 381 l~~R~l~Gig~g~~~~~~~a~i~--------~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~--- 449 (1693)
++.|++.|++.+...+.+.++.. |......|.|..|. +|.++||.+++.+....+|+. |++.
T Consensus 96 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~------lG~~ig~~l~g~l~~~~~~~~-f~~~~~~ 168 (418)
T TIGR00889 96 FPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT------IGFIAAMWAVSLLDIELSNIQ-LYITAGS 168 (418)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh------HHHHHHHHHHHHhcccchhHH-HHHHHHH
Confidence 99999999998887777665532 22333345666663 567777777777644444653 3222
Q ss_pred ---------CCcccccccccCcccccc--------cccchhhHHHHHHHHHHHHHHhhhhhhhhhhhcccccccCC----
Q psy10222 450 ---------PLPQRSYLHLGNRLFSFS--------YLTGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQLESAN---- 508 (1693)
Q Consensus 450 ---------~~p~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 508 (1693)
..|+.+... +++..+.+ ...+.+++.. ......+............+.++.+...+.
T Consensus 169 ~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 246 (418)
T TIGR00889 169 SALLGVFALTLPDIPVAK-STAKMSIKVMLGLDAFILFKNKRMAI-FFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFAD 246 (418)
T ss_pred HHHHHHHHhcCCCCCCCc-cccccCHHHHhhhhHHHHhcCCCeee-HHHHHHHHHhHHHHHHHhHHHHHHHhcccccccc
Confidence 122211000 00000000 0001111111 111111111111111122222232221110
Q ss_pred ----CC---cccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHhhhhCCh
Q psy10222 509 ----ST---IPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMAT----EVWLICVGRFLTGLSVGLSS 577 (1693)
Q Consensus 509 ----~~---~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~ 577 (1693)
.. .......+.+++.+..|+++||+|||+.+..+.++..++..+..... +.+.+++.+++.|++.+...
T Consensus 247 ~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~ 326 (418)
T TIGR00889 247 SFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFN 326 (418)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 01 11122235556788999999999999999999998888766665532 24567788999999999888
Q ss_pred hHHHHHHHhccCcchhhHHHHHHH-HHHHHHHHHHHHhhhhh----------hhHHHHHHhHHHHHHHHHH-hhcccCC
Q psy10222 578 PPSIVYIAESTEPRYRGAILAIVS-LAISSGIFISHLLGTFL----------HWKTASAVCALFPFISCIF-VYSTPES 644 (1693)
Q Consensus 578 ~~~~~~~~E~~p~~~Rg~~~~~~~-~~~~lG~~~~~~~~~~~----------~wr~~~~~~~~~~~i~~~~-~~~lpES 644 (1693)
+....++.|..|++.||++.++.+ ..+.+|..+++.+++.+ +|+..+.+.++..++..+. .+++||+
T Consensus 327 ~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 327 ISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 888999999999999999999997 56788999998887654 3888888877776665444 4456765
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.1e-18 Score=211.00 Aligned_cols=382 Identities=16% Similarity=0.172 Sum_probs=268.2
Q ss_pred hhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHH
Q psy10222 1253 VLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVIL-AGRF 1331 (1693)
Q Consensus 1253 ~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~~~~~ll-i~R~ 1331 (1693)
...+.+++ +++.+.++.+|+.++......+..++.+.+.||||.|++.+.+.++..+|.++..+++|+|+++ ..=+
T Consensus 67 v~~~~~~~---~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gv 143 (509)
T KOG2504|consen 67 LLFEELMD---YFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGV 143 (509)
T ss_pred hhHHHHHH---HhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56677775 7888999999999999999999999999999999999999999999999999999999998765 6778
Q ss_pred HHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHHHHHHHHHhccc-c
Q psy10222 1332 LTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFPCASFIFAYFT-P 1406 (1693)
Q Consensus 1332 l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~~v~lv~~~~l-p 1406 (1693)
+.|+|.|..+..+...+..++ +++|+.+.|+...+.++|..+-|.+..++ |||+.+++.+.+.+-.++....+ |
T Consensus 144 i~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 144 IGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred HhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999666 66899999999999999999988888777 99999999888876666555543 4
Q ss_pred CChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcc----------cccchhhh--hhhhhh---hhHhhc
Q psy10222 1407 ESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTI----------TKSENMTD--KKKKLE---WKKNIL 1471 (1693)
Q Consensus 1407 Esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~--~~~~~~---~~~~~~ 1471 (1693)
.+++- +.+ ++ +..+......+..+............... ...+.... ..+... .+++++
T Consensus 223 ~~~~~---~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~ 296 (509)
T KOG2504|consen 223 LSPPK---KPN-EE--KDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLK 296 (509)
T ss_pred CCcCC---Cch-hh--hhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHc
Confidence 33321 000 00 00000000000000000000000000000 00000000 001111 145555
Q ss_pred ccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCC--hhHHHHH
Q psy10222 1472 CTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGR--RPLALLS 1548 (1693)
Q Consensus 1472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~gr--r~~l~~~ 1548 (1693)
++ ..+...+.......++....+++|.+.++.+++ .+........++..+++-++.|++.|+... +.+..++
T Consensus 297 ~~-----~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ 371 (509)
T KOG2504|consen 297 DP-----KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLT 371 (509)
T ss_pred Cc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHH
Confidence 53 344445555555566778888888888888888 778888889999999999999999999884 3445555
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1549 CLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKT 1628 (1693)
Q Consensus 1549 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~ 1628 (1693)
.++.+++.+.+ ...+....+...+++.++............+.|+.+.+.-..+.|+...+..++..++|.+
T Consensus 372 ll~~gl~~~~~--------p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPi 443 (509)
T KOG2504|consen 372 LLIAGLARLFL--------PFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPI 443 (509)
T ss_pred HHHHHHHHHHH--------HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCccc
Confidence 55555555333 2222334444455555555545555555678899999999999999999999999999999
Q ss_pred HHHHHHhcC-cchhHHHHHHHHHHHHHHHh
Q psy10222 1629 GPLLFLSIG-TPETFGLYGCITAFGFVFLY 1657 (1693)
Q Consensus 1629 ~~~l~~~~g-~~~~f~i~~~~~ll~~v~~~ 1657 (1693)
.+.+.+..| |...|...+...+++.+..+
T Consensus 444 ag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~ 473 (509)
T KOG2504|consen 444 AGLLYDITGNYDHAFYFCGLCFLLSAVLLL 473 (509)
T ss_pred ceeeeeccCCeeeehhhcChHHHHHHHHHH
Confidence 999999887 88888888888877776544
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-17 Score=206.27 Aligned_cols=340 Identities=12% Similarity=0.035 Sum_probs=227.3
Q ss_pred hhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccc-cCCchhHHHHHHHHHHHHHHHHhcch
Q psy10222 298 SGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDS-CGRRFSNLILCIPFVLGWIIISSATK 376 (1693)
Q Consensus 298 ~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~-~Grr~vl~~~l~~~~~~s~l~~~a~s 376 (1693)
...+++.....+|....+...+|++..+.+++.+.+.+...+++++.|+++|| +|||+++.++.++++++.++.+++++
T Consensus 22 ~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~ 101 (475)
T TIGR00924 22 ERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIY 101 (475)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444444444555433322389999999999999999999999999999999 89999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhccccchhhhhhhccccCccc---chhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC----
Q psy10222 377 VWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKY---RGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG---- 449 (1693)
Q Consensus 377 ~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~---rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~---- 449 (1693)
.+.++++|++.|+|.|...|...++++|++|+++ |+++.++...+..+|.++||++++++.+++|||+.|.+.
T Consensus 102 ~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~ 181 (475)
T TIGR00924 102 PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGM 181 (475)
T ss_pred HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9999999999999999999999999999998764 899999999999999999999999999999999888764
Q ss_pred ----------C--Ccccccccc--cCccccc-c-----------------------------------------------
Q psy10222 450 ----------P--LPQRSYLHL--GNRLFSF-S----------------------------------------------- 467 (1693)
Q Consensus 450 ----------~--~p~~~~~~~--~~~~~~~-~----------------------------------------------- 467 (1693)
. .++....+. ..+.... .
T Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (475)
T TIGR00924 182 VIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKP 261 (475)
T ss_pred HHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 000000000 0000000 0
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhhhhhccccc-----ccCCCC-------cccccchhHHHHHHH----HHHhhh
Q psy10222 468 YLTGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQL-----ESANST-------IPITPEDGSWIACVL----SCILMD 531 (1693)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~-------~~~~~~~g~~iG~~~----~G~lsD 531 (1693)
......+...................+.-....++.+ ..+... +...+....++..++ ..++.|
T Consensus 262 ~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~ 341 (475)
T TIGR00924 262 RLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGR 341 (475)
T ss_pred cCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 0000000111111111111111111111111111111 111011 111222233333333 334455
Q ss_pred h-hchhHH--HHHHHHHHHHHHHHHHh---------cchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHH
Q psy10222 532 L-YGRRFT--NLILCVPFVLGWVIMSM---------ATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAI 599 (1693)
Q Consensus 532 r-~GRk~~--l~~~~~~~~i~~~~~~~---------~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~ 599 (1693)
| .+.+.. +.++.++.+++....++ ..|++++++..++.++|-....|...+++.|.+|++.||++.++
T Consensus 342 ~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~ 421 (475)
T TIGR00924 342 KGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGM 421 (475)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHH
Confidence 4 222333 36677777777666554 35899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHH
Q psy10222 600 VSLAISSGIFISHLLGTFL----HWKTASAVCALFPFISCIF 637 (1693)
Q Consensus 600 ~~~~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~ 637 (1693)
......+|..+++.+.... +|...+...++..++..+.
T Consensus 422 ~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (475)
T TIGR00924 422 WFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVV 463 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 9999999999988776544 4666665555554444333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-18 Score=193.08 Aligned_cols=338 Identities=12% Similarity=0.073 Sum_probs=245.4
Q ss_pred CCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhh
Q psy10222 1263 STIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSP 1342 (1693)
Q Consensus 1263 ~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~ 1342 (1693)
.+++-...+.|++.+.+.+...+..++.|.+.||+|+|..+++++++...++++.++..++++++++|.+||+|.+...+
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence 46677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHhhhccCCC-cchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHHHHHHHHHhccc-cCChHHHHhcC
Q psy10222 1343 VALVYIAETTEPK-YRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFPCASFIFAYFT-PESPPWLASKG 1416 (1693)
Q Consensus 1343 ~~~~~i~e~~p~~-~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~~v~lv~~~~l-pEsp~~l~~~~ 1416 (1693)
...++++|.+|++ +|++++|+...+.++|.++||++|+.+ |.+.+|.+.+++.++...+.+++ +.+..
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~------ 252 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM------ 252 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc------
Confidence 9999999999976 589999999999999999999999998 99999999999998887777764 33210
Q ss_pred CHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHH
Q psy10222 1417 FTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNT 1496 (1693)
Q Consensus 1417 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1496 (1693)
+++ ..++..++++++++|...- ....+.++ ...
T Consensus 253 ---------------~~~------------------------~~~~~~~~~~Ll~dP~I~~---~agai~~~-----n~~ 285 (464)
T KOG3764|consen 253 ---------------DPD------------------------STEQGTPMWSLLMDPYILL---IAGAITFS-----NSS 285 (464)
T ss_pred ---------------Ccc------------------------ccccCccHHHHHhCchHhh---hhcchhhc-----cch
Confidence 000 0122334566666654321 11112211 111
Q ss_pred HHHhHHHH----HhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcC--ChhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy10222 1497 LIFYTVGI----SKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFG--RRPLALLSCLGTCLSLLGVASILKFMQGL 1569 (1693)
Q Consensus 1497 ~~~~~p~~----~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~g--rr~~l~~~~~~~~i~~~~~~~~~~~~~~~ 1569 (1693)
+.+.-|.+ .++.... .+.+...++..+...+++.+.+.+.||++ |-.....+.+..++++... ......
T Consensus 286 lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~i----P~~~~~ 361 (464)
T KOG3764|consen 286 LAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPI----PFATSI 361 (464)
T ss_pred HHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchh----HhhhhH
Confidence 22333322 2233433 46778888899999999999999999999 4333333444333332222 111111
Q ss_pred CchHHHHHHHHHHHHHHHhhccccchhhccccCccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q psy10222 1570 LPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQA---TRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYG 1646 (1693)
Q Consensus 1570 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~---~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~f~i~~ 1646 (1693)
...|.....+.+..........|... +..|.-..+ .-|...++......++.+++|.+.+.+.+..|+.|...+.+
T Consensus 362 ~~L~vp~~~l~~~i~~~dasl~P~l~-~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig 440 (464)
T KOG3764|consen 362 AQLWVPNFGLGFGIGLADASLIPTLG-YLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIG 440 (464)
T ss_pred HHHhhhhHHHHHHHHHHHHHHhhhhH-HhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHH
Confidence 22333333333334444444445433 333433333 55788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy10222 1647 CITAFGFVFLYI 1658 (1693)
Q Consensus 1647 ~~~ll~~v~~~~ 1658 (1693)
...++..-+..+
T Consensus 441 ~~n~iyapvl~l 452 (464)
T KOG3764|consen 441 ILNLIYAPVLLL 452 (464)
T ss_pred HHHHHHHHHHHH
Confidence 888877665543
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-17 Score=206.15 Aligned_cols=340 Identities=14% Similarity=0.086 Sum_probs=220.6
Q ss_pred HhhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhcccc-----CCch-hHHHHHHHHHHHH
Q psy10222 295 DFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSC-----GRRF-SNLILCIPFVLGW 368 (1693)
Q Consensus 295 ~~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~-----Grr~-vl~~~l~~~~~~s 368 (1693)
+...++........+|...++ -|.+.+++|++...... .+.++++|+++||+ |||| .+..+.++.+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~---~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~ 82 (402)
T PRK11902 8 GFASGLPLALTSGTLQAWMTV---EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI 82 (402)
T ss_pred HHHHhhhHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence 345566666666677777666 89999999999666665 58899999999999 8876 7899999999998
Q ss_pred HHHHhc---chhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccc-cCeEE
Q psy10222 369 IIISSA---TKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVR-HLGLV 444 (1693)
Q Consensus 369 ~l~~~a---~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~-~gWr~ 444 (1693)
.+.++. ++++.+++..++.|...+...|+..+++.|++|+|||+++.++...+..+|.++++.+++++.+. +|||.
T Consensus 83 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~ 162 (402)
T PRK11902 83 AAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGN 162 (402)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHH
Confidence 888887 35788888888899999999999999999999999999999999999999999999999999885 59999
Q ss_pred EeecC------------CCcccccccccCcc--ccc--ccccchhhHHHHHH-HHHHHHHHhhhhhhhhhhhcccc-ccc
Q psy10222 445 MALVG------------PLPQRSYLHLGNRL--FSF--SYLTGYCLFQLLAA-AGPIFATLGSGMTSGFSAVLLPQ-LES 506 (1693)
Q Consensus 445 ~f~i~------------~~p~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~ 506 (1693)
+|++. ..|+.+....+++. .+. ......+.+..... ....+..........+..+++.+ .+.
T Consensus 163 ~f~i~a~~~l~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~ 242 (402)
T PRK11902 163 TYLLMAGLMLAGALTTLWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGF 242 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Confidence 88764 11111110000000 000 00000111111111 11111111111111222222221 221
Q ss_pred CCCCccccc----chhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHH---Hhc-chHHHHHHHH----HHHHhhhh
Q psy10222 507 ANSTIPITP----EDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIM---SMA-TEVWLICVGR----FLTGLSVG 574 (1693)
Q Consensus 507 ~~~~~~~~~----~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~---~~~-~~~~~l~~~r----~l~G~~~g 574 (1693)
+...+.... ..+.++|.+++|++.||+|||+.+..+..+..+..+.. ++. ++.+.+.+.- +..|++.+
T Consensus 243 ~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 322 (402)
T PRK11902 243 SAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTA 322 (402)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 111122221 23467889999999999999998877666555443322 343 3455555444 45566677
Q ss_pred CChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHHHHHHHhh
Q psy10222 575 LSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFLHWKTASAVCALFPFISCIFVY 639 (1693)
Q Consensus 575 ~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~~wr~~~~~~~~~~~i~~~~~~ 639 (1693)
...+....++.+..|.+.++...+..+.....+..++..+....+|+..+.+.++.+++.++..+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 323 AFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 77777777888888877665544443333333333444444455899999998888877766543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-16 Score=179.88 Aligned_cols=354 Identities=12% Similarity=0.085 Sum_probs=259.6
Q ss_pred HhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy10222 1239 TATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIIS 1318 (1693)
Q Consensus 1239 l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~ 1318 (1693)
...++-++......+.+|++++ .|+++..|.+++..+++.|+.+++++.|.+.+|+|+|..+++++.++.+++.+..
T Consensus 20 ~lFfl~G~~~~l~diLip~l~~---~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~ 96 (422)
T COG0738 20 SLFFLWGFITCLNDILIPHLKE---VFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFW 96 (422)
T ss_pred HHHHHHHHHhhcchhhHHHHHH---HhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 3346778888888999999996 7999999999999999999999999999999999999999999999999999984
Q ss_pred ---hhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc-------------
Q psy10222 1319 ---LATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL------------- 1382 (1693)
Q Consensus 1319 ---~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l------------- 1382 (1693)
-..+|..++++-|+.|.|.|...+.+..|++.+.|+++-...+++.+.+.++|.+++|++++.+
T Consensus 97 pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~ 176 (422)
T COG0738 97 PAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQ 176 (422)
T ss_pred hhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHH
Confidence 5678999999999999999999999999999999999999999999999999999999998765
Q ss_pred ----------hhHHHHHHhHHHHHHHHHHhcc--ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhc
Q psy10222 1383 ----------HWKTTSAVCALFPCASFIFAYF--TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERST 1450 (1693)
Q Consensus 1383 ----------~WR~~f~i~~i~~~v~lv~~~~--lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1450 (1693)
.||++|...+...++..+.... +||.+. +
T Consensus 177 ~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~-----------------------~---------------- 217 (422)
T COG0738 177 ILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV-----------------------A---------------- 217 (422)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc-----------------------c----------------
Confidence 3777777666655555444433 344321 0
Q ss_pred ccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHH
Q psy10222 1451 ITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVM 1528 (1693)
Q Consensus 1451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig 1528 (1693)
+....+.++....+++++|+.+.. .+..+.+.+.-..+..+.+.+..+ .|.+ .++.......-.+.++|
T Consensus 218 ----~~~~~~~~~~~~~~l~~~~~~~~g-----vl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vG 288 (422)
T COG0738 218 ----APSLGASGSAGLSSLFQNKHLRLG-----VLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVG 288 (422)
T ss_pred ----cccccccccchHHHHHhChHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 000000111134556666544332 222223333445566677777777 5777 66777777778888999
Q ss_pred HHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhH
Q psy10222 1529 AFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRE 1608 (1693)
Q Consensus 1529 ~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~ 1608 (1693)
.+++.++..|+...+.+.+...+..+.++.. . .. + . ...+......+.+....+|..+....+..|.+ -.
T Consensus 289 RFig~~lm~~~~~~k~Laf~a~~~ill~~~~-~---l~-~--g--~v~~~~l~~ig~F~simfPTIfslal~~l~~~-ts 358 (422)
T COG0738 289 RFIGSALMSRIKPEKYLAFYALIAILLLLAV-A---LI-G--G--VVALYALFLIGLFNSIMFPTIFSLALKNLGEH-TS 358 (422)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH-H---Hh-c--C--hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcc-cc
Confidence 9999999999998888877666555554444 1 11 1 1 22233344445566667788888888888833 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH
Q psy10222 1609 LGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFV 1654 (1693)
Q Consensus 1609 ~a~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v 1654 (1693)
..+.......+|+++.|.+.+++.|..|....+......|.+..+
T Consensus 359 -~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV~ 403 (422)
T COG0738 359 -VGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVL 403 (422)
T ss_pred -ccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 333444456689999999999999999987777655666665553
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-15 Score=187.23 Aligned_cols=367 Identities=9% Similarity=-0.086 Sum_probs=232.0
Q ss_pred HHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHH--HHHhHHHHHHHHHHHH-HhhhhchhHHHHHHHHHHH-H
Q psy10222 1236 GPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWI--ASMASLPTFIACILGS-FLMEMYGRRLTNLVLCIPF-I 1311 (1693)
Q Consensus 1236 ~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l--~s~~~lg~~ig~l~~G-~lsDr~GRr~~ll~~~~l~-~ 1311 (1693)
.+....+..+...+...+.+|...+ |.+.|.++.+++ .+...+...+.+++++ +.+||+|||+..++.+.+. .
T Consensus 5 ~~~~ly~~~g~~~~~~~p~lp~~l~---~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~ 81 (390)
T TIGR02718 5 TLGLLYLSQGIPIGLAMDALPTLLR---EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVS 81 (390)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHH
Confidence 3444567888999999999999886 778999999997 3566777777788874 4799999999876655332 2
Q ss_pred HHHHHHH-h--hhh-HHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----h
Q psy10222 1312 MGWVIIS-L--ATE-VWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----H 1383 (1693)
Q Consensus 1312 i~~ll~~-~--a~~-~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~ 1383 (1693)
......+ + ..+ ...++..-++.++..+...+..-++..|..++++++...+....+..+|.++|+...+++ +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~g 161 (390)
T TIGR02718 82 ACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFG 161 (390)
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2222222 1 222 334455556666777777777777888888888888888888888888999988766554 9
Q ss_pred hHHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhh
Q psy10222 1384 WKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKK 1463 (1693)
Q Consensus 1384 WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1463 (1693)
||..|++.+...++..+..++++|+++ ++.+ + + +++.
T Consensus 162 w~~~f~~~a~l~~~~~~~~~~~~~~~~---~~~~--~-------------~-------------------------~~~~ 198 (390)
T TIGR02718 162 QRPAFLLVACVPLASLVCVLWLKDRAV---ASPE--A-------------P-------------------------LARR 198 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCc---Cccc--c-------------c-------------------------hhhH
Confidence 999999999888776665555544321 0000 0 0 0001
Q ss_pred hhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHH-HHHHHHHHHHHHhhhhcCC
Q psy10222 1464 LEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVID-IVRVVMAFVTCGLLRIFGR 1541 (1693)
Q Consensus 1464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~-i~~~ig~~~~g~l~dr~gr 1541 (1693)
.+.++.++++..+.... ...+... .......+.+.+.++.|++ .+.+......+ ...+++.++.+++.||+|+
T Consensus 199 ~~~~~~l~~~~~~~~~~-~~~l~~~----~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~ 273 (390)
T TIGR02718 199 ASLFRFFRRPLAWSLLA-LALLSAM----TAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGL 273 (390)
T ss_pred HHHHHHHcCcCHHHHHH-HHHHHHH----HHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 12345555554332222 2222211 1222333455666667888 55566555554 4566778999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCcc-chhHHHHHHHHHHHHH
Q psy10222 1542 RPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQ-ATRELGSGISTCFAFL 1620 (1693)
Q Consensus 1542 r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~-~~r~~a~g~~~~~~~l 1620 (1693)
|+.+..+....++..+.. ................ .......+......+..+....+..++ +.++++.++.+....+
T Consensus 274 ~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l 351 (390)
T TIGR02718 274 WRTFILGVGLAGSLALLW-FAQAAFWLAPGIAVAW-SCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDL 351 (390)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHcccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 998887766553333222 1111111111111111 111121111122223334444455554 8899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHH
Q psy10222 1621 TLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVF 1655 (1693)
Q Consensus 1621 g~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~ 1655 (1693)
|..++|.+.+.+++..|++..|...+++.+++.++
T Consensus 352 g~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 352 GELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888877777665543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-15 Score=171.74 Aligned_cols=363 Identities=16% Similarity=0.145 Sum_probs=267.4
Q ss_pred HHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHH
Q psy10222 1231 LIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPF 1310 (1693)
Q Consensus 1231 ~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~ 1310 (1693)
++.+..+.+..+.-.-..+.+.|.++++++ |+|+|.+..+++++...+..++.+++..+++.|+|-++.+..++++.
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~---~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli 87 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQ---DLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLI 87 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHH---HhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHH
Confidence 666666666667777777888899999985 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc-----hhH
Q psy10222 1311 IMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL-----HWK 1385 (1693)
Q Consensus 1311 ~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l-----~WR 1385 (1693)
.+|.++-... +...++.+-.+.|.|.+......+..+-|.+|+ +-+..+++|....++|..+++.+.-.+ +||
T Consensus 88 ~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~ 165 (395)
T COG2807 88 AAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWR 165 (395)
T ss_pred HHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHH
Confidence 9999998887 888999999999999999999999999999976 578899999998888877776554444 799
Q ss_pred HHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhh
Q psy10222 1386 TTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLE 1465 (1693)
Q Consensus 1386 ~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1465 (1693)
....+-+.++++.++.++. ...|. + .. ..+.+..+
T Consensus 166 ~aL~~WAl~allAl~~WlP--q~~r~---~-~~---------------------------------------~~~~~~~~ 200 (395)
T COG2807 166 GALGFWALLALLALLIWLP--QALRE---Q-AA---------------------------------------SIATKLVS 200 (395)
T ss_pred HHHHHHHHHHHHHHHHHhh--hcccc---c-cc---------------------------------------cccccccc
Confidence 9999999998888776653 21110 0 00 00001111
Q ss_pred hhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhc-CChh
Q psy10222 1466 WKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIF-GRRP 1543 (1693)
Q Consensus 1466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~-grr~ 1543 (1693)
...+++++. .....+++..+-..+|....|.|.++.+.|++ .+++.......+..++.++....+.+|. .+|+
T Consensus 201 ~~~vw~~~~-----aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~ 275 (395)
T COG2807 201 VRKVWRSPL-----AWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRP 275 (395)
T ss_pred ccccccCch-----hHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 123344432 22334444455556888999999999999999 8899888899999999999999999875 4566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhcccc-CccchhHHHHHHHHHHHHHHH
Q psy10222 1544 LALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGEL-FPQATRELGSGISTCFAFLTL 1622 (1693)
Q Consensus 1544 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~-~p~~~r~~a~g~~~~~~~lg~ 1622 (1693)
........+.++.+.+ . +.+.....++ .+..+.+..+.++.......+- -.++..+.-.|+.+.++++-+
T Consensus 276 ~~~~~~~~~l~G~~G~---~-~~P~~~~~lw-----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllA 346 (395)
T COG2807 276 LVVLALLLMLVGLVGL---L-LAPGQLPILW-----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLA 346 (395)
T ss_pred HHHHHHHHHHHHHHHH---H-HhhhhHHHHH-----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHH
Confidence 6666666666666555 1 2222221112 1223333334445444444433 344566777899999999999
Q ss_pred HHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHHHh
Q psy10222 1623 FVVVKTGPLLFLSIG-TPETFGLYGCITAFGFVFLY 1657 (1693)
Q Consensus 1623 ~i~~~~~~~l~~~~g-~~~~f~i~~~~~ll~~v~~~ 1657 (1693)
..+|.+++.+.|..| |+.....+..+.++..+..+
T Consensus 347 a~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 347 AFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred hhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence 999999999999875 55566666666665555554
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-17 Score=190.51 Aligned_cols=318 Identities=17% Similarity=0.093 Sum_probs=217.0
Q ss_pred hhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhH---HHHHH
Q psy10222 307 VLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVW---LLCVG 383 (1693)
Q Consensus 307 ~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~---~ll~~ 383 (1693)
.+-|.++++ +++|++|.+++.+.-.+..++.-++.|.+.||+|.|++...+.++..+-.+..+++.+.+ ++++.
T Consensus 35 ~l~~~i~~~---~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~ 111 (417)
T COG2223 35 PLGVFIKSD---FGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVI 111 (417)
T ss_pred HHHhhhccc---cCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHH
Confidence 445555556 999999999999999999999999999999999999999999999999999999998776 99999
Q ss_pred HHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccC---eEEEeecC-----------
Q psy10222 384 RFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHL---GLVMALVG----------- 449 (1693)
Q Consensus 384 R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~g---Wr~~f~i~----------- 449 (1693)
+++.|++ |+.+.+++..+++|||||++|.|+|+.. .-++|..+...++.+++...| ||....+.
T Consensus 112 gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~ 189 (417)
T COG2223 112 GLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLA 189 (417)
T ss_pred HHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999997 5558999999999999999999999999 777888888888888888888 88433322
Q ss_pred -----CCcccccccccCcccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCc-----ccccchhH
Q psy10222 450 -----PLPQRSYLHLGNRLFSFSYLTGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQLESANSTI-----PITPEDGS 519 (1693)
Q Consensus 450 -----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~g~ 519 (1693)
+.|+.+... +...+.+.....+.++ .+..+..+....|...+.. .++|.+..++..+ ......+.
T Consensus 190 ~~~~~d~p~~r~~~--~~~~~~~~~~v~~~~~--~W~lsllY~~tFG~Fvgfs-~~l~~~~~~~fg~~~~~Ag~~a~~f~ 264 (417)
T COG2223 190 WLGMNDVPEHRASV--KPQLPAQLKAVFSNKD--TWLLSLLYFATFGGFVGFS-AYLPMYLVTQFGLSPVTAGLIAFLFP 264 (417)
T ss_pred HHHhCCChhhhccc--cccchhHHHHHhcCcc--hHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 333321111 1100000001111111 1222222222222222221 1223222221111 12222344
Q ss_pred HHH---HHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcc-------hH----HHHHHHHHHHHhhhhCChhHHHHHHH
Q psy10222 520 WIA---CVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMAT-------EV----WLICVGRFLTGLSVGLSSPPSIVYIA 585 (1693)
Q Consensus 520 ~iG---~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~-------~~----~~l~~~r~l~G~~~g~~~~~~~~~~~ 585 (1693)
.+| .+++|+++||+|.++++......++++..+.+... +. ..++...+..|+|.|..+-..+.+-.
T Consensus 265 ~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~ 344 (417)
T COG2223 265 LIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP 344 (417)
T ss_pred HHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH
Confidence 444 56899999999999988888888887777666543 22 33555666777777776666655543
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHHHHHHHhh
Q psy10222 586 ESTEPRYRGAILAIVSLAISSGIFISHLLGTFL-----HWKTASAVCALFPFISCIFVY 639 (1693)
Q Consensus 586 E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~-----~wr~~~~~~~~~~~i~~~~~~ 639 (1693)
+ +-|.+.++......+|...-|...+.. +++..+.+.....+++....+
T Consensus 345 ~-----~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~ 398 (417)
T COG2223 345 K-----ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTW 398 (417)
T ss_pred h-----hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 3 678888888888888877766554433 588888887777777666543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-15 Score=189.41 Aligned_cols=378 Identities=11% Similarity=0.025 Sum_probs=219.3
Q ss_pred CccCCcchhHHHHHHhHHHHHHHHHHHHHhhhh-chhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhhhhhchh
Q psy10222 1264 TIPITPEDGTWIASMASLPTFIACILGSFLMEM-YGRRLTNLVLCIPFIMGWVIISLAT-EVWVILAGRFLTGFALGLSS 1341 (1693)
Q Consensus 1264 ~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr-~GRr~~ll~~~~l~~i~~ll~~~a~-~~~~lli~R~l~Gig~g~~~ 1341 (1693)
++|.++.+.+++.+.+........+++|+++|| +|||++++.+.+++.++.+++++++ +.+.+.++|+++|+|.|...
T Consensus 51 ~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~ 130 (500)
T PRK09584 51 QLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFK 130 (500)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhccc
Confidence 789999999999988887777777899999999 5999999999999999999999875 56777889999999999999
Q ss_pred hhHhHHhhhccCCCc--chhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHHHHHHHHHhc----cccCChHH
Q psy10222 1342 PVALVYIAETTEPKY--RGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFPCASFIFAY----FTPESPPW 1411 (1693)
Q Consensus 1342 ~~~~~~i~e~~p~~~--Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~~v~lv~~~----~lpEsp~~ 1411 (1693)
+...+++.|++|+++ |..+.+++..+.++|..+||++++++ |||+.|++.++..++.++... .++|.++-
T Consensus 131 ~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~ 210 (500)
T PRK09584 131 ANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSK 210 (500)
T ss_pred CCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCC
Confidence 999999999998654 45678888999999999999999988 899999998865444332222 23432100
Q ss_pred HHhcCCHHHHHHHH-----------HHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhc-ccCchHHH
Q psy10222 1412 LASKGFTVQAQQAF-----------YWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNIL-CTEFLKPL 1479 (1693)
Q Consensus 1412 l~~~~~~~~a~~~l-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 1479 (1693)
..+++.+...... ......+.+.. .......... ......++..+ .+..+++.
T Consensus 211 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 275 (500)
T PRK09584 211 -PDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIA---RMALGVVALG-----------IVVIFGKEAFAMKGAARRKM 275 (500)
T ss_pred -CCccccchhhHHHHHHHHHHHHHHHHHHHhcchHH---HHHHHHHHHH-----------HHHHHHHHHhhcCHHHHHHH
Confidence 0000011100000 00000000000 0000000000 00000000000 01112222
Q ss_pred HHHHHHHHHHHhhhhHHHHHhHHHHHh----h-c-----CCCchhHHHHHHHHHHHHHHHHHHHHhhh----hcCChhHH
Q psy10222 1480 AIILVFFFVQQFSGLNTLIFYTVGISK----E-V-----SPDVNEYTATIVIDIVRVVMAFVTCGLLR----IFGRRPLA 1545 (1693)
Q Consensus 1480 ~~~~~~~~~~~~~~~~~~~~~~p~~~~----~-~-----g~s~~~~~~~~~~~i~~~ig~~~~g~l~d----r~grr~~l 1545 (1693)
+......... . .++......+..+. + . |.............+..++..++..++-+ |.+.+..+
T Consensus 276 ~~~~~~~~~~-i-~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~ 353 (500)
T PRK09584 276 IVAFILMLEA-I-IFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKF 353 (500)
T ss_pred HHHHHHHHHH-H-HHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHH
Confidence 2222221111 1 11111111222211 1 1 22222444444555555555555544444 44444667
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc--cCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHH
Q psy10222 1546 LLSCLGTCLSLLGVASILKFMQG--LLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLF 1623 (1693)
Q Consensus 1546 ~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~ 1623 (1693)
.+|....+++.+.+ ........ ...+.+..+......+.+.....|....++.+..|++.|+.++|+......+|+.
T Consensus 354 ~~G~~l~~l~f~~l-~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~ 432 (500)
T PRK09584 354 AIGMVLCSGAFLVL-PLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAAL 432 (500)
T ss_pred HHHHHHHHHHHHHH-HHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 77788888777665 22221111 1112334555666667777778888888999999999999999987766666666
Q ss_pred HHHHHHHHHH----------HhcCcchhHHHHHHHHHHHHHHHhhh
Q psy10222 1624 VVVKTGPLLF----------LSIGTPETFGLYGCITAFGFVFLYIF 1659 (1693)
Q Consensus 1624 i~~~~~~~l~----------~~~g~~~~f~i~~~~~ll~~v~~~~~ 1659 (1693)
++..+..... ...++...|...++++++.+++.+..
T Consensus 433 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~ 478 (500)
T PRK09584 433 IAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLT 478 (500)
T ss_pred HHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655553211 01135567777777666555544443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-16 Score=199.73 Aligned_cols=323 Identities=17% Similarity=0.179 Sum_probs=218.3
Q ss_pred HHHhhhhhhhhhHh-hhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccc----cCCch-hHHHHHHHHHH
Q psy10222 293 MGDFSSGTAVGFSA-VLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDS----CGRRF-SNLILCIPFVL 366 (1693)
Q Consensus 293 ~~~~~~~l~~~~~~-~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~----~Grr~-vl~~~l~~~~~ 366 (1693)
++............ ...|.+.+. +|+++.++|++.+...+..++..|+.|+++|| +|||| .++.+...+++
T Consensus 6 ~g~~~~~~~~~~~~~~l~~~~~~~---~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i 82 (437)
T TIGR00792 6 FGDFGNNFIFAIVSTYLLFFYTDV---LGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSI 82 (437)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHc---cCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHH
Confidence 34444444444443 455666666 89999999999999999999999999999997 67744 67789899999
Q ss_pred HHHHHHhcch------hHHHHHHHHHHhhhccccchhhhhhhcccc-CcccchhHHHHHHHHHHhhHHHHhhhhcccc--
Q psy10222 367 GWIIISSATK------VWLLCVGRFLTGLSIGFLTPPAIVYIAETS-EPKYRGAFLAVSSLAISSGILVSHLLDHLPT-- 437 (1693)
Q Consensus 367 ~s~l~~~a~s------~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~-p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~-- 437 (1693)
+.+++.++++ +.++++.+++.|++.+...++..++..|.. +++||+++.++.+.+..+|..+++.+.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~ 162 (437)
T TIGR00792 83 VLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSY 162 (437)
T ss_pred HHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988775 457778899999999988888889999987 5789999999998888887776655544332
Q ss_pred -----cccCeEEEeecC-------------CCcccccc-ccc-Cccccccc--ccchhhHHHHHHHHHH-HHHHhhhhhh
Q psy10222 438 -----VRHLGLVMALVG-------------PLPQRSYL-HLG-NRLFSFSY--LTGYCLFQLLAAAGPI-FATLGSGMTS 494 (1693)
Q Consensus 438 -----~~~gWr~~f~i~-------------~~p~~~~~-~~~-~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~ 494 (1693)
+..|||++|.+. ..++.+.. +.. +++.+.+. ....+.+++....... +.........
T Consensus 163 ~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 242 (437)
T TIGR00792 163 FGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKN 242 (437)
T ss_pred hCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc
Confidence 357899877653 11211100 000 00000000 0001122222222211 1111111111
Q ss_pred hhhhhcccccccCCC---CcccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHH
Q psy10222 495 GFSAVLLPQLESANS---TIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMA-TEVWLICVGRFLTG 570 (1693)
Q Consensus 495 ~~~~~~l~~~~~~~~---~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~-~~~~~l~~~r~l~G 570 (1693)
.+...+......... .+......+.++++++.++++||+|||+.+..+..+.+++.+...+. ++.+.+++..++.|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 322 (437)
T TIGR00792 243 GVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAG 322 (437)
T ss_pred chhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHH
Confidence 222222222111111 12223356777889999999999999999998888887777666654 35667777888899
Q ss_pred hhhhCChhHHHHHHHhccC-------cchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10222 571 LSVGLSSPPSIVYIAESTE-------PRYRGAILAIVSLAISSGIFISHLLGTFL 618 (1693)
Q Consensus 571 ~~~g~~~~~~~~~~~E~~p-------~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~ 618 (1693)
++.+...+...++++|..| ++.+|...++.++...+|..+++.+.+.+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 323 FGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875 56789999999999999999888776554
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=197.65 Aligned_cols=328 Identities=12% Similarity=0.044 Sum_probs=216.6
Q ss_pred hhhHHhhhccc-cCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHH---Hhcc-----hh
Q psy10222 307 VLLPQLQSANS-TIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIII---SSAT-----KV 377 (1693)
Q Consensus 307 ~~~P~l~~~~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~---~~a~-----s~ 377 (1693)
...|.++.+.. ++|.+..+.++..+.+.+...+++++.|+++||+|||++++.++..++++.... .+++ ..
T Consensus 20 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (396)
T TIGR00882 20 AYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNIL 99 (396)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34444433322 389999999999999999999999999999999999999998887776654432 2222 23
Q ss_pred HHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC--------
Q psy10222 378 WLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG-------- 449 (1693)
Q Consensus 378 ~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~-------- 449 (1693)
..+++.|+++|++.+...|...+++.|.- +++++..|.......+|.++||++++.+. .+|||.+|++.
T Consensus 100 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~-~~~~~~~f~~~~~~~~~~~ 176 (396)
T TIGR00882 100 VGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILF-SIDPQIVFWLGSGFALILM 176 (396)
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhh-ccCchHHHHHHHHHHHHHH
Confidence 44567799999999988888877776643 34567888888888999999999999885 46999988775
Q ss_pred -----CCccccccc-ccC----cccc--ccc-ccchhhHHHHHH-HHHHHHHHhhhhhhhhhhhcccccccC-C---CCc
Q psy10222 450 -----PLPQRSYLH-LGN----RLFS--FSY-LTGYCLFQLLAA-AGPIFATLGSGMTSGFSAVLLPQLESA-N---STI 511 (1693)
Q Consensus 450 -----~~p~~~~~~-~~~----~~~~--~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~-~---~~~ 511 (1693)
..++.+..+ .+. +... .+. ....+.++.+.. ...............+.+.++++...+ . ...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 256 (396)
T TIGR00882 177 LLLMFAKPKAPSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVF 256 (396)
T ss_pred HHHHHhCCCCchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHH
Confidence 111111000 000 0000 000 000111111111 111111111111112333333332111 1 111
Q ss_pred cc---ccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhcc
Q psy10222 512 PI---TPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAEST 588 (1693)
Q Consensus 512 ~~---~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~ 588 (1693)
.. .......++.+..|++.||+|||+.+.++..+.++...+....++.+.+++..++.|++..........+..|..
T Consensus 257 g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 336 (396)
T TIGR00882 257 GYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQF 336 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11 122234566788999999999999999988888887777677888888888999999988766666677888888
Q ss_pred CcchhhHHHHH-HHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHH
Q psy10222 589 EPRYRGAILAI-VSLAISSGIFISHLLGTFL----HWKTASAVCALFPFISCIF 637 (1693)
Q Consensus 589 p~~~Rg~~~~~-~~~~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~ 637 (1693)
|++.+++..+. .+....+|..+++.+.+.+ +|+.++.+.++..++..+.
T Consensus 337 ~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 337 DVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 88888887666 6778888888888776655 7888888887776665544
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=189.32 Aligned_cols=296 Identities=14% Similarity=0.101 Sum_probs=206.9
Q ss_pred HhhhhHHhhhccccCCcccch-hhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHHHH
Q psy10222 305 SAVLLPQLQSANSTIPITTED-ASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCVG 383 (1693)
Q Consensus 305 ~~~~~P~l~~~~~~~~~s~~~-~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~~ 383 (1693)
.+++.|.+.++ +|+|.+| .|.+.+.++.+|++++++.|+++||+|.|+++..+++.|++.+++.++++++..+.+.
T Consensus 45 ~s~a~p~L~~e---lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~ 121 (511)
T TIGR00806 45 ESFITPYLLTV---LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLM 121 (511)
T ss_pred HHHHHHHHHHH---cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888887 9999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC--------------
Q psy10222 384 RFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG-------------- 449 (1693)
Q Consensus 384 R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~-------------- 449 (1693)
|++.|+++|+.+ +..+++..|+|++||+++.|+..++..+|.+++++++++ +..+|||+-+.++
T Consensus 122 R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a 199 (511)
T TIGR00806 122 EVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLA 199 (511)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999999999999999999 5689999755444
Q ss_pred -CCccccc---cccc------------Cc-cc-c--cc---c-----------------ccchhhHHHHHHH---HHHHH
Q psy10222 450 -PLPQRSY---LHLG------------NR-LF-S--FS---Y-----------------LTGYCLFQLLAAA---GPIFA 486 (1693)
Q Consensus 450 -~~p~~~~---~~~~------------~~-~~-~--~~---~-----------------~~~~~~~~~~~~~---~~~~~ 486 (1693)
-+|..+. .+.+ .. .. . .. + .......+|-.+. .+...
T Consensus 200 ~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~ 279 (511)
T TIGR00806 200 LFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYY 279 (511)
T ss_pred HhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHH
Confidence 1221110 0000 00 00 0 00 0 0000111121222 11111
Q ss_pred HHhhhhhhhhhhhcccccccCCCCcccccchhHHHHHHHHHHhhhhhchhH--HHHHHHHHHHHHHHHHHhcchHHHHHH
Q psy10222 487 TLGSGMTSGFSAVLLPQLESANSTIPITPEDGSWIACVLSCILMDLYGRRF--TNLILCVPFVLGWVIMSMATEVWLICV 564 (1693)
Q Consensus 487 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~iG~~~~G~lsDr~GRk~--~l~~~~~~~~i~~~~~~~~~~~~~l~~ 564 (1693)
.........|-. +-|.-..-++.........+.+.++..|++-.++.|.- .+.+..++.....++++..+|.|.-++
T Consensus 280 qv~~Y~Q~LW~~-v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~ 358 (511)
T TIGR00806 280 LITYYVHTLWGT-LDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYV 358 (511)
T ss_pred HHHHHHHHHHHH-cCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHH
Confidence 111111111211 11210011122222333345567889999988775533 333333444444566777889999999
Q ss_pred HHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHH
Q psy10222 565 GRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISS 606 (1693)
Q Consensus 565 ~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~l 606 (1693)
+..+.+.......+.+..-+++....+.-|...+++++...+
T Consensus 359 ~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~ 400 (511)
T TIGR00806 359 TYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATA 400 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHH
Confidence 999988888888888888888888877778777776654443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=6e-17 Score=202.68 Aligned_cols=334 Identities=18% Similarity=0.160 Sum_probs=254.5
Q ss_pred HhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHHHH-
Q psy10222 305 SAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCVG- 383 (1693)
Q Consensus 305 ~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~~- 383 (1693)
.+.+.+.++++ ++.+.++++|+.+.....+.++.|+.+.+.||+|.|++.+.|.++.++|.+++++++++|++++.
T Consensus 65 ~Gv~~~~~~~~---f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~ 141 (509)
T KOG2504|consen 65 FGLLFEELMDY---FGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTF 141 (509)
T ss_pred ehhhHHHHHHH---hCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33677888888 99999999999999999999999999999999999999999999999999999999999999885
Q ss_pred HHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC-------------C
Q psy10222 384 RFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG-------------P 450 (1693)
Q Consensus 384 R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~-------------~ 450 (1693)
-++.|+|.|..+.++..++..||+ |||+.|.|+..+|.++|..+-|++..++.+.+|||..+++. .
T Consensus 142 gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~ 220 (509)
T KOG2504|consen 142 GVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALL 220 (509)
T ss_pred HHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 499999999999999999999995 79999999999999999999999999999999999877654 1
Q ss_pred Cccccc------------------------ccccCccc--c---------------------cccccc---hhhHHHHHH
Q psy10222 451 LPQRSY------------------------LHLGNRLF--S---------------------FSYLTG---YCLFQLLAA 480 (1693)
Q Consensus 451 ~p~~~~------------------------~~~~~~~~--~---------------------~~~~~~---~~~~~~~~~ 480 (1693)
.|.... .....+.. . .+.... ....+-...
T Consensus 221 rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~f 300 (509)
T KOG2504|consen 221 RPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKF 300 (509)
T ss_pred CCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchH
Confidence 220000 00000000 0 000000 000000111
Q ss_pred HHHHHHHHhhhhhhhhhhhccccccc----CC---CCcccccchhHHHHHHHHHHhhhhhc--hhHHHHHHHHHHHHHHH
Q psy10222 481 AGPIFATLGSGMTSGFSAVLLPQLES----AN---STIPITPEDGSWIACVLSCILMDLYG--RRFTNLILCVPFVLGWV 551 (1693)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~l~~~~~----~~---~~~~~~~~~g~~iG~~~~G~lsDr~G--Rk~~l~~~~~~~~i~~~ 551 (1693)
.............+..+..++|.+.. ++ ..+.........+|.++.|+++|+.. ++....++.+..+++.+
T Consensus 301 l~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~ 380 (509)
T KOG2504|consen 301 LLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARL 380 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHH
Confidence 11111111111112222233443322 11 11233445566789999999999998 45566677777778788
Q ss_pred HHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHH
Q psy10222 552 IMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL-----HWKTASAV 626 (1693)
Q Consensus 552 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~-----~wr~~~~~ 626 (1693)
...+.++++.++..-.+.|++.|......+..+.|..+.++-..+.++..++..++.++++.+++.+ +|...+..
T Consensus 381 ~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~ 460 (509)
T KOG2504|consen 381 FLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYF 460 (509)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhh
Confidence 8888999999999999999999999998889999999999999999999999999999999888866 59999999
Q ss_pred hHHHHHHHHHHhhccc
Q psy10222 627 CALFPFISCIFVYSTP 642 (1693)
Q Consensus 627 ~~~~~~i~~~~~~~lp 642 (1693)
+++..+++...++..|
T Consensus 461 ~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 461 CGLCFLLSAVLLLILR 476 (509)
T ss_pred cChHHHHHHHHHHHhH
Confidence 9988888877766665
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.5e-16 Score=194.49 Aligned_cols=334 Identities=16% Similarity=0.199 Sum_probs=239.7
Q ss_pred hhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhc-----
Q psy10222 300 TAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSA----- 374 (1693)
Q Consensus 300 l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a----- 374 (1693)
++..+..+.++.+..+ ..-|+..++.+.....+...+..++.|.++||++|||+++.+-++.++..++.++.
T Consensus 24 lG~~~~~va~~wlv~~---lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~ 100 (524)
T PF05977_consen 24 LGDWMQTVALAWLVTQ---LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGL 100 (524)
T ss_pred HHHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3333444455555544 55677888999999999999999999999999999999999998887665554432
Q ss_pred chhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecCC----
Q psy10222 375 TKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVGP---- 450 (1693)
Q Consensus 375 ~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~~---- 450 (1693)
.+++.+++.-++.|++.+...|+-.+++.|..|+++..+++++.+....++-++||.+||.+...+|=.+.|.++.
T Consensus 101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl 180 (524)
T PF05977_consen 101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFL 180 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999999999999999999999999999999999999999999988888887777650
Q ss_pred --------C-cccccccccCcc--cc----cccccchhhHHHHHHHHHHHHHHhhhhhhhhhhhcccc-cccCCCC---c
Q psy10222 451 --------L-PQRSYLHLGNRL--FS----FSYLTGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQ-LESANST---I 511 (1693)
Q Consensus 451 --------~-p~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~---~ 511 (1693)
. +.........+. .. .++....+..... ........+..+......+.+..+ ++..... +
T Consensus 181 ~~i~~l~~~~~~~~~~~~~~e~~~~~l~~G~ryv~~~~~l~~~-l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll 259 (524)
T PF05977_consen 181 ISILALLRWKPPPPPSSLPRERFFSALREGLRYVRSSPPLRSV-LLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLL 259 (524)
T ss_pred HHHHHHHHccccccccccchhhhhhhHHHHHHHHhcchHHHHH-HHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHH
Confidence 0 000000000000 00 0011111111111 111111112212222222222211 2222222 2
Q ss_pred ccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcc
Q psy10222 512 PITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPR 591 (1693)
Q Consensus 512 ~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~ 591 (1693)
......|+++|+++.+++.+|+++++.+..+.+..+++.+..+++++.+...+..++.|++.........+.+.+..|++
T Consensus 260 ~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~ 339 (524)
T PF05977_consen 260 LAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDW 339 (524)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 34556799999999999999999999888888888888888899999999999999999999998889999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHH
Q psy10222 592 YRGAILAIVSLAISSGIFISHLLGTFL----HWKTASAVCALFPFISCIF 637 (1693)
Q Consensus 592 ~Rg~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~ 637 (1693)
.||++.+++++....+..+|..+.+.+ +-+..+.+.++..++..+.
T Consensus 340 ~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 340 VRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 999999999888887777777766655 5666666666544444433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-14 Score=176.41 Aligned_cols=367 Identities=12% Similarity=0.106 Sum_probs=233.1
Q ss_pred CccCCcchhHHHHHHhHHHHHHHHHHHHHhhh----hchhHHHHHHH-HHHHHHHHHHHHhhhhHHHHHH----------
Q psy10222 1264 TIPITPEDGTWIASMASLPTFIACILGSFLME----MYGRRLTNLVL-CIPFIMGWVIISLATEVWVILA---------- 1328 (1693)
Q Consensus 1264 ~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsD----r~GRr~~ll~~-~~l~~i~~ll~~~a~~~~~lli---------- 1328 (1693)
+++.+..+.+++..+..+...+.+++.|.++| |+|||+.++.+ .....++.++.+++++...++.
T Consensus 33 ~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~ 112 (477)
T TIGR01301 33 ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPR 112 (477)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhH
Confidence 68899999999999999999999999999999 59999998875 5555666677777776532211
Q ss_pred --HHHHHh-----hhhhchhhhHhHHhhhccCCCcc--hhhhHHHHHHHHHHHHHHHHhhhhc-----------------
Q psy10222 1329 --GRFLTG-----FALGLSSPVALVYIAETTEPKYR--GVLSALLCTAVAIGIFTAHLLGTFL----------------- 1382 (1693)
Q Consensus 1329 --~R~l~G-----ig~g~~~~~~~~~i~e~~p~~~R--g~~~~l~~~~~~lG~~lg~~lg~~l----------------- 1382 (1693)
.+++.| ++.....+...++++|..|+++| +.+.++.+...++|.++|+.+|++.
T Consensus 113 ~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~ 192 (477)
T TIGR01301 113 AIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVS 192 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccc
Confidence 334444 47788888899999999999865 5789999999999999999988764
Q ss_pred --hhHHHHHHhHHHHHHHHHHhcc-ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhh
Q psy10222 1383 --HWKTTSAVCALFPCASFIFAYF-TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTD 1459 (1693)
Q Consensus 1383 --~WR~~f~i~~i~~~v~lv~~~~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1459 (1693)
+-|+.|++.++..++..+...+ .+|.|.. ..++.++ + +.++.++. +.
T Consensus 193 ~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~--~~~~~~~--~---~~~~~~~~-----------------------~~ 242 (477)
T TIGR01301 193 CANLKSCFLIDIILLAILTYIALSAVKENPLI--GSDDFIN--S---EAAPPSKH-----------------------GE 242 (477)
T ss_pred cchHHHHHHHHHHHHHHHHHHHeeeeeccCCC--ccccchh--h---hccccccc-----------------------ch
Confidence 4577888888777666555544 7887631 0000000 0 00000000 00
Q ss_pred hhhhhhhhHhhcc-cCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc--CCC------c-hh---H-HHHHHHHHHH
Q psy10222 1460 KKKKLEWKKNILC-TEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEV--SPD------V-NE---Y-TATIVIDIVR 1525 (1693)
Q Consensus 1460 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--g~s------~-~~---~-~~~~~~~i~~ 1525 (1693)
........+.+++ |+..+ ..+...++. +.++..+.+|...+..+. +.+ . +. + ......++..
T Consensus 243 ~~~~~~i~~~~~~mP~~m~---~l~~vqffs-W~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~ 318 (477)
T TIGR01301 243 EAFFGELFGAFKYLPRPVW---ILLLVTCLN-WIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVL 318 (477)
T ss_pred hhhHHHHHHHHHHCCHHHH---HHHHHHHHH-HHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 0001111222222 22222 222223322 224444555555544432 111 1 11 2 2344455566
Q ss_pred HHHHHHHHHhhhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHhhcc------------Cc--hHHHHHHHHHHHHHHHhhc
Q psy10222 1526 VVMAFVTCGLLRIFGR-RPLALLSCLGTCLSLLGVASILKFMQGL------------LP--SFMPVILLMFYMVFVSIGL 1590 (1693)
Q Consensus 1526 ~ig~~~~g~l~dr~gr-r~~l~~~~~~~~i~~~~~~~~~~~~~~~------------~~--~~~~~~~~~l~~~~~~~~~ 1590 (1693)
.+.+++-.++.+|+|+ |....++.++.++++... .+.....++ .+ .....+..+...++.-...
T Consensus 319 ~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~ 397 (477)
T TIGR01301 319 GITSIGMEKLCRGWGAGKRLWGIVNIILAICLAAT-VLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAIT 397 (477)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-HHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHH
Confidence 6777777888999985 666688877777777665 222211000 00 0133344444455555566
Q ss_pred cccchhhccccCccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHHHhhhccCCCC
Q psy10222 1591 QQLPWMMIGELFPQA--TRELGSGISTCFAFLTLFVVVKTGPLLFLSIG--TPETFGLYGCITAFGFVFLYIFLPETKN 1665 (1693)
Q Consensus 1591 ~~~~~~~~~e~~p~~--~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~g--~~~~f~i~~~~~ll~~v~~~~~~~et~~ 1665 (1693)
..++++++++..|.+ ..|.-+|+.|.+-.+...+.+...+.+.+..| ....+.+.++..+++++..++.+|+++.
T Consensus 398 ~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 398 YSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 788899999988854 44888999999999999888888777666554 4557777778888888988888888764
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=186.83 Aligned_cols=299 Identities=11% Similarity=-0.002 Sum_probs=207.9
Q ss_pred hhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhc
Q psy10222 312 LQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCVGRFLTGLSI 391 (1693)
Q Consensus 312 l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~~R~l~Gig~ 391 (1693)
++++ .+....+.+++.+.|.++|++++++.+.+.||++-.+.+....++|++-++++....|++.+++.|++.|+.+
T Consensus 72 ~~ed---l~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~e 148 (495)
T KOG2533|consen 72 LKED---LKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFE 148 (495)
T ss_pred Cccc---cchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4555 7888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhccc------ccccCeEEEeecC----------------
Q psy10222 392 GFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLP------TVRHLGLVMALVG---------------- 449 (1693)
Q Consensus 392 g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l------~~~~gWr~~f~i~---------------- 449 (1693)
++.+|....+++.||.++|||+.+|++.+..++|.++|..++..+ ....||||+|++.
T Consensus 149 s~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 149 SGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred cccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEec
Confidence 999999999999999999999999999999999999999998775 3468999999985
Q ss_pred CCcccccccccCc-------cc--cc----ccccch------hhHHHHHHHHHH-HHHHhhhhhhhhhhhcccc---ccc
Q psy10222 450 PLPQRSYLHLGNR-------LF--SF----SYLTGY------CLFQLLAAAGPI-FATLGSGMTSGFSAVLLPQ---LES 506 (1693)
Q Consensus 450 ~~p~~~~~~~~~~-------~~--~~----~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~---~~~ 506 (1693)
..|.......+.+ .+ .. ...+.. .....+....+. +..........|.+.++.+ +..
T Consensus 229 ~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~ 308 (495)
T KOG2533|consen 229 DNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSE 308 (495)
T ss_pred CChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcCh
Confidence 2222111111000 00 00 001111 111222222222 2222223344455555544 111
Q ss_pred -CCCCcccccchhHHHHHHHHHHhhhh----hchhHHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHhhhhCChhHH
Q psy10222 507 -ANSTIPITPEDGSWIACVLSCILMDL----YGRRFTNLILCVPFVLGW-VIMSMATEVWLICVGRFLTGLSVGLSSPPS 580 (1693)
Q Consensus 507 -~~~~~~~~~~~g~~iG~~~~G~lsDr----~GRk~~l~~~~~~~~i~~-~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 580 (1693)
+...++.....+.++|.+++|+++|| ..+|........+..+.. .......+.......-.....+.+...+..
T Consensus 309 ~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (495)
T KOG2533|consen 309 LQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIA 388 (495)
T ss_pred HHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHH
Confidence 12335667778999999999999999 677777666655554444 444444334444444455556667777778
Q ss_pred HHHHHhccCcchhhHHHHH-HHHHHHHHHHHHHH
Q psy10222 581 IVYIAESTEPRYRGAILAI-VSLAISSGIFISHL 613 (1693)
Q Consensus 581 ~~~~~E~~p~~~Rg~~~~~-~~~~~~lG~~~~~~ 613 (1693)
....++...++.|...... .....+.+..+++.
T Consensus 389 ~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~ 422 (495)
T KOG2533|consen 389 LSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQ 422 (495)
T ss_pred HhhccccccchHHhHHHHhhhhcchhHHHHhhhh
Confidence 8888888877666554443 34444555544443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-15 Score=187.70 Aligned_cols=336 Identities=18% Similarity=0.132 Sum_probs=232.4
Q ss_pred hhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q psy10222 308 LLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCVGRFLT 387 (1693)
Q Consensus 308 ~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~~R~l~ 387 (1693)
++|.+..+ +|- .....|+.+...++.++++++.|.++|.+|||.+++.+.++..+|+++++.|+|..+++++-++.
T Consensus 66 ~l~~I~~d---iG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~ 141 (599)
T PF06609_consen 66 ILPYINAD---IGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLY 141 (599)
T ss_pred HHHHHHHh---cCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHH
Confidence 45666666 553 36678999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC---------------CCc
Q psy10222 388 GLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG---------------PLP 452 (1693)
Q Consensus 388 Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~---------------~~p 452 (1693)
|+|.|.... ....++|..|.|.|+...++...........+|.++..+..+-+|||.|++. ..|
T Consensus 142 GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP 220 (599)
T PF06609_consen 142 GVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPP 220 (599)
T ss_pred HHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999888654 4556899999999988888777766666667888887777788999998876 111
Q ss_pred ccccccc-cC-cccc------------------------------ccc-------------------------------c
Q psy10222 453 QRSYLHL-GN-RLFS------------------------------FSY-------------------------------L 469 (1693)
Q Consensus 453 ~~~~~~~-~~-~~~~------------------------------~~~-------------------------------~ 469 (1693)
.....+. +. ++.. ..+ .
T Consensus 221 ~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl 300 (599)
T PF06609_consen 221 PRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPL 300 (599)
T ss_pred chhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCc
Confidence 1100000 00 0000 000 0
Q ss_pred cc---hhh-HHHHHHH-HHHH-HHHhhhhhhhhhhhcccccccCC------CCcccccchhHHHHHHHHHHhhhhhch-h
Q psy10222 470 TG---YCL-FQLLAAA-GPIF-ATLGSGMTSGFSAVLLPQLESAN------STIPITPEDGSWIACVLSCILMDLYGR-R 536 (1693)
Q Consensus 470 ~~---~~~-~~~~~~~-~~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~g~~iG~~~~G~lsDr~GR-k 536 (1693)
.. ++. +.+...+ +.++ ....+.....|+......+.++. .........|.++|+++.|.+..+++| |
T Consensus 301 ~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~K 380 (599)
T PF06609_consen 301 FPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIK 380 (599)
T ss_pred CCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchh
Confidence 00 011 1111111 1111 11112222223322222222211 113345566888999999999998887 5
Q ss_pred HHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHh
Q psy10222 537 FTNLILCVPFVLGWVIMSM--ATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLL 614 (1693)
Q Consensus 537 ~~l~~~~~~~~i~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~ 614 (1693)
+.++++.+++.++.-+++. .+|....+..-++.|++.|....+..+.+.-.+|+++-|.++++......+|+.++..+
T Consensus 381 w~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aI 460 (599)
T PF06609_consen 381 WQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAI 460 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 6666777666654333333 34555667788899999999999998888889999999999999999999988887543
Q ss_pred hhhh------------------------------------------------------------------hhHHHHHHhH
Q psy10222 615 GTFL------------------------------------------------------------------HWKTASAVCA 628 (1693)
Q Consensus 615 ~~~~------------------------------------------------------------------~wr~~~~~~~ 628 (1693)
...+ ++|++++...
T Consensus 461 y~~I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~si 540 (599)
T PF06609_consen 461 YNAIFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSI 540 (599)
T ss_pred HHHHHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2110 4788888888
Q ss_pred HHHHHHHHHhhcccCChHHH
Q psy10222 629 LFPFISCIFVYSTPESPSWL 648 (1693)
Q Consensus 629 ~~~~i~~~~~~~lpESp~~l 648 (1693)
.+++++++..+++++-.+++
T Consensus 541 aFG~vaiiaa~fl~d~~~~m 560 (599)
T PF06609_consen 541 AFGVVAIIAALFLGDIDKYM 560 (599)
T ss_pred HHHHHHHHHHHHcCChHHhh
Confidence 88888888888888765543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-14 Score=181.90 Aligned_cols=377 Identities=15% Similarity=0.088 Sum_probs=233.7
Q ss_pred HHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhch-----hHHHHHHHHHHH
Q psy10222 1236 GPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYG-----RRLTNLVLCIPF 1310 (1693)
Q Consensus 1236 ~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~G-----Rr~~ll~~~~l~ 1310 (1693)
++....+..|..........|.+. ++++++.++.+...+...+...+-.+ +|+++||++ ||+.++++.++.
T Consensus 30 ~~~~~y~~qGl~~l~~~~~~~~l~---~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~ 105 (468)
T TIGR00788 30 IGLQVLFVKGIAGLMRLPLSPMLT---DDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLG 105 (468)
T ss_pred HHHHHHHHhhHHHHhhhhhhHHHH---HhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHH
Confidence 333344667777333344455555 37999999999999999999999776 999999998 888888887776
Q ss_pred H-HHHHHHHhhhhHHHH-HHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHH---HHHHHHHHHHHHHhhhhc---
Q psy10222 1311 I-MGWVIISLATEVWVI-LAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALL---CTAVAIGIFTAHLLGTFL--- 1382 (1693)
Q Consensus 1311 ~-i~~ll~~~a~~~~~l-li~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~---~~~~~lG~~lg~~lg~~l--- 1382 (1693)
. +.....+..++...+ .+.+++.+++.+..-+.+-++..|..+ +++....+.. .....+|.++|+.+++.+
T Consensus 106 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~ 184 (468)
T TIGR00788 106 SAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK 184 (468)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 333333333554444 458999999999999999999999998 5554433333 333457888888888876
Q ss_pred -hhHHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhh
Q psy10222 1383 -HWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKK 1461 (1693)
Q Consensus 1383 -~WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1461 (1693)
+||..|++.+.+.++..+...++||.+.....+. .++.. ....... .. .. ...++
T Consensus 185 ~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~-~~~~~-----------~~~~~~~---~~-~~--------~~~~~ 240 (468)
T TIGR00788 185 TLTRILFLITAALLLLQLFVSNLSKERRAFVRPRI-GTYLE-----------MNMALLT---LG-VL--------ANVKV 240 (468)
T ss_pred cCcchHHHHHHHHHHHHHHHHHhcccccccccccc-cccch-----------hhhhhhh---hh-HH--------HHHHH
Confidence 8999999998888777666667888631000000 00000 0000000 00 00 00011
Q ss_pred hhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy10222 1462 KKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFG 1540 (1693)
Q Consensus 1462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~g 1540 (1693)
.....++.++++..++.....++.+. ...+.....++ ...+..|++ ...+......+++.+++....+++.+|++
T Consensus 241 ~~~~l~~~l~~~~i~~~l~fifl~~~--~~~~~~~~~f~--~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~ 316 (468)
T TIGR00788 241 QILGLRGAIQLLEIAKPLIFIFLSYA--NLPGASGSVFC--ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFP 316 (468)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHh--hcCCCCceeEE--EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 11223334444433332222221011 11111100111 111245777 77888888889999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH-HHhh-c-cCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHH
Q psy10222 1541 RRPLALLSCLGTCLSLLGVASIL-KFMQ-G-LLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCF 1617 (1693)
Q Consensus 1541 rr~~l~~~~~~~~i~~~~~~~~~-~~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~ 1617 (1693)
.|+.+.++.++.+++.+...... .+.. . ....+.......+..........+ ...++++..|++.+++..++.+.+
T Consensus 317 ~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~-~~~~~~~~~p~~~egt~~al~~s~ 395 (468)
T TIGR00788 317 YRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMP-FLVLLARLCPSGCESSVFALLASI 395 (468)
T ss_pred HHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHcc-HHHHHHHhCCCCceehHHHHHHHH
Confidence 99999988888777664430000 0000 0 011122222233333344444434 367888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC-----cchhHHHHH
Q psy10222 1618 AFLTLFVVVKTGPLLFLSIG-----TPETFGLYG 1646 (1693)
Q Consensus 1618 ~~lg~~i~~~~~~~l~~~~g-----~~~~f~i~~ 1646 (1693)
.++|..+++.+.+.+.+..| ++..+....
T Consensus 396 ~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~ 429 (468)
T TIGR00788 396 LHLGSSVSGFLGVLLMETIGITCDNSNNLWLLIL 429 (468)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccccchHHHHH
Confidence 99999999999999999888 555444333
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.8e-14 Score=176.35 Aligned_cols=341 Identities=11% Similarity=-0.037 Sum_probs=214.4
Q ss_pred HHhhhhhhhhhHhhhhHHhhhccccCCcccchhhHHH--HHHHHHHHHHHHHh-hhhccccCCchhHHHHHHHH-HHHHH
Q psy10222 294 GDFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIA--SMAALPMAVACVLG-CIAMDSCGRRFSNLILCIPF-VLGWI 369 (1693)
Q Consensus 294 ~~~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~--s~~~~~~~~~~~~~-g~l~d~~Grr~vl~~~l~~~-~~~s~ 369 (1693)
-++..|+........+|...++ .|.+.+++|... ....+.-.+..++. ++..||.||||..++.+.+. ++...
T Consensus 9 ly~~~g~~~~~~~p~lp~~l~~---~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~ 85 (390)
T TIGR02718 9 LYLSQGIPIGLAMDALPTLLRE---DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLA 85 (390)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHH
Confidence 3456666666666666666666 899999999973 44455555566666 55789999999975555332 22222
Q ss_pred HHH---hcch-hHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEE
Q psy10222 370 IIS---SATK-VWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVM 445 (1693)
Q Consensus 370 l~~---~a~s-~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~ 445 (1693)
..+ ...+ ..+++..-.+.++..+..-+..-++..|+.++++++...+....+..+|.++|+.+.+++.+++|||.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~ 165 (390)
T TIGR02718 86 SLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPA 165 (390)
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 222 2222 334555566677777777788888889999988899999999999999999999999999999999988
Q ss_pred eecCC------------CcccccccccCccccccc-ccchhhHH-HHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCc
Q psy10222 446 ALVGP------------LPQRSYLHLGNRLFSFSY-LTGYCLFQ-LLAAAGPIFATLGSGMTSGFSAVLLPQLESANSTI 511 (1693)
Q Consensus 446 f~i~~------------~p~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 511 (1693)
|++.. .++....+.+.+....+. ....+.+. +.......+..........+.++++.+.+.+....
T Consensus 166 f~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~i 245 (390)
T TIGR02718 166 FLLVACVPLASLVCVLWLKDRAVASPEAPLARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWI 245 (390)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcCccccchhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHH
Confidence 87650 111100000000000000 00011111 11222222333333334444555544432222212
Q ss_pred cccc----chhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHh------cchHHHHHHHHHHHHhhhhCChhHHH
Q psy10222 512 PITP----EDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSM------ATEVWLICVGRFLTGLSVGLSSPPSI 581 (1693)
Q Consensus 512 ~~~~----~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~------~~~~~~l~~~r~l~G~~~g~~~~~~~ 581 (1693)
.... ..+..+|.++.|++.||+|+|+.+..+..+..+..+.... .++...+.....+.+++.|...+...
T Consensus 246 g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 325 (390)
T TIGR02718 246 GRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIY 325 (390)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1211 2355678899999999999999888776655333222211 12333444555566777777778888
Q ss_pred HHHHhccCc-chhhHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHH
Q psy10222 582 VYIAESTEP-RYRGAILAIVSLAISSGIFISHLLGTFL----HWKTASAVCALFPFISCIF 637 (1693)
Q Consensus 582 ~~~~E~~p~-~~Rg~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~ 637 (1693)
++..+..++ +.+|+..++.+...++|..+++.+++.+ +|+..+.+.++..+++++.
T Consensus 326 ~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 326 TAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 888888776 8999999999999999999999887765 6888888877766665543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-13 Score=172.81 Aligned_cols=323 Identities=13% Similarity=0.025 Sum_probs=204.1
Q ss_pred CCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhh----chh-HHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHH
Q psy10222 1263 STIPITPEDGTWIASMASLPTFIACILGSFLMEM----YGR-RLTNLVLCIPFIMGWVIISLATE------VWVILAGRF 1331 (1693)
Q Consensus 1263 ~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr----~GR-r~~ll~~~~l~~i~~ll~~~a~~------~~~lli~R~ 1331 (1693)
+++++++.+.+.+.++..+.-++..|+.|.++|| +|| |+.++.+....+++..+....++ ...+.+.-.
T Consensus 38 ~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~ 117 (444)
T PRK09669 38 DVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYI 117 (444)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 3789999999999999999999999999999998 787 56666777777777766655543 455666677
Q ss_pred HHhhhhhchhhhHhHHhhhcc-CCCcchhhhHHHHHHHHHHHHHHHHhhh----hc-------hhHHHHHHhHHHHHHHH
Q psy10222 1332 LTGFALGLSSPVALVYIAETT-EPKYRGVLSALLCTAVAIGIFTAHLLGT----FL-------HWKTTSAVCALFPCASF 1399 (1693)
Q Consensus 1332 l~Gig~g~~~~~~~~~i~e~~-p~~~Rg~~~~l~~~~~~lG~~lg~~lg~----~l-------~WR~~f~i~~i~~~v~l 1399 (1693)
+.+.+.......-.++..|+. ++++|.+..++-..+..+|..+++.++. .+ +|+..+.+.+++.++..
T Consensus 118 l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~ 197 (444)
T PRK09669 118 LLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLF 197 (444)
T ss_pred HHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 777766666666778899998 4588999888887777777666654322 11 68888888887776665
Q ss_pred HHhcc-ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHH
Q psy10222 1400 IFAYF-TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKP 1478 (1693)
Q Consensus 1400 v~~~~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1478 (1693)
+..++ .+|.++. . + + ++.+.....+..++++.++.-
T Consensus 198 ~~~~~~~~e~~~~----~---~-------------~-----------------------~~~~~~~~~~~~~~n~~~~~l 234 (444)
T PRK09669 198 FCCFFMTKERYTP----E---V-------------D-----------------------NSSSVWKDLKLLLGNSQWRIM 234 (444)
T ss_pred HHHhCCeEEecCC----C---C-------------c-----------------------CCCCHHHHHHHHhCCchHHHH
Confidence 54433 4553210 0 0 0 000112234455666654433
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhHHHHHhhc-CCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHH
Q psy10222 1479 LAIILVFFFVQQFSGLNTLIFYTVGISKEV-SPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLL 1557 (1693)
Q Consensus 1479 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~s~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~ 1557 (1693)
........... .......+++.+.. +.............+..+++.++.+++.||+|+|+....+....++..+
T Consensus 235 ~~~~~~~~~~~-----~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~ 309 (444)
T PRK09669 235 FIFNVVLLTAV-----VTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSA 309 (444)
T ss_pred HHHHHHHHHHH-----HHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 22222222221 11112222222222 2112222334444567778888999999999999988877665554332
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCcc-------chhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1558 GVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQ-------ATRELGSGISTCFAFLTLFVVVKTGP 1630 (1693)
Q Consensus 1558 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~a~g~~~~~~~lg~~i~~~~~~ 1630 (1693)
.+ +. ....+ .+...+..+..+.......+..++..+|..+. +..+...+..++...+|..+++.+.+
T Consensus 310 ~~---~~--~~~~~-~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g 383 (444)
T PRK09669 310 LI---FF--IPPSN-VWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVG 383 (444)
T ss_pred HH---HH--hCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 11 11222 22223333344444445667778888888752 33466788999999999999999999
Q ss_pred HHHHhcCcc
Q psy10222 1631 LLFLSIGTP 1639 (1693)
Q Consensus 1631 ~l~~~~g~~ 1639 (1693)
.+++..|+.
T Consensus 384 ~ll~~~Gy~ 392 (444)
T PRK09669 384 WILAWVDYV 392 (444)
T ss_pred HHHHHcCCC
Confidence 999988773
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.7e-13 Score=161.31 Aligned_cols=363 Identities=15% Similarity=0.141 Sum_probs=231.9
Q ss_pred hhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhch-hHHHHHHHHHHHHHHHHHHHhhhh
Q psy10222 1244 AGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYG-RRLTNLVLCIPFIMGWVIISLATE 1322 (1693)
Q Consensus 1244 ~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~G-Rr~~ll~~~~l~~i~~ll~~~a~~ 1322 (1693)
.....+...|-+|..-+ +.+.|..|+|.+.++..+...++++++|.++||++ +|+.+.+..++..+........++
T Consensus 14 ~f~~~G~~~p~~~~~L~---~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~ 90 (400)
T PF03825_consen 14 YFFAYGAFLPYLPLYLE---SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSS 90 (400)
T ss_pred HHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344444455555543 67899999999999999999999999999999986 577777777777777777778889
Q ss_pred HHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHH-----Hhhhhc---hhHHHHHHhHHH
Q psy10222 1323 VWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAH-----LLGTFL---HWKTTSAVCALF 1394 (1693)
Q Consensus 1323 ~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~-----~lg~~l---~WR~~f~i~~i~ 1394 (1693)
++.+++.-++..+......|..-++..+...+ +++-.|-.-...++|.+++. .+.+.. +..+.+++.+..
T Consensus 91 f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 168 (400)
T PF03825_consen 91 FWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAIL 168 (400)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHH
Confidence 99999999898988888888888888887763 23333333334444444442 223333 233456666666
Q ss_pred HHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccC
Q psy10222 1395 PCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTE 1474 (1693)
Q Consensus 1395 ~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1474 (1693)
.++.....+.+|+.|+ ++. .++ ..++....+..+++++|+
T Consensus 169 ~~ll~~~~l~lp~~~~---~~~-~~~------------------------------------~~~~~~~~~~~~llk~~~ 208 (400)
T PF03825_consen 169 SLLLAGFALFLPKTPP---KRS-AKE------------------------------------SVKKLLGLDALKLLKNPR 208 (400)
T ss_pred HHHHHHHHHhCCCCcc---ccc-cCC------------------------------------CcccccchHHHHHhcCcc
Confidence 5555555566888762 000 000 000111123346777765
Q ss_pred chHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcC-CC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHH
Q psy10222 1475 FLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVS-PD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGT 1552 (1693)
Q Consensus 1475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~ 1552 (1693)
...-.+..... .........|.+.+.++.| .+ ...+.......+.+++.-...+++..|+|.|+++.++....
T Consensus 209 ~~~Fll~~~l~-----~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~ 283 (400)
T PF03825_consen 209 FLVFLLAAFLI-----GISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAY 283 (400)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 43222222211 1123445566777788776 55 44555555667789999999999999999999998888776
Q ss_pred HHHHHHHHHHHHHhhccCchHHHHHHHHH----HHHHHHhhccccchhhccccCccchhHHHHHHHHHH-HHHHHHHHHH
Q psy10222 1553 CLSLLGVASILKFMQGLLPSFMPVILLMF----YMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCF-AFLTLFVVVK 1627 (1693)
Q Consensus 1553 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~-~~lg~~i~~~ 1627 (1693)
++=..++ .. ..++.+.......+ ....++ ........|+.+..|++.|+++.++.+.. ..+|+.++..
T Consensus 284 ~vR~~l~----a~--~~~~~~~~~~~~~l~q~lhG~tf~-~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~ 356 (400)
T PF03825_consen 284 AVRWLLY----AY--FSDPWPFIVALQLLGQLLHGLTFG-LFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSL 356 (400)
T ss_pred HHHHHHH----HH--hcCCcHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHH
Confidence 6654443 11 11222222222222 222222 23344557889999999999999998876 5689999999
Q ss_pred HHHHHHHhcCcchh------HHHHHHHHHHHHHHHhhhccCC
Q psy10222 1628 TGPLLFLSIGTPET------FGLYGCITAFGFVFLYIFLPET 1663 (1693)
Q Consensus 1628 ~~~~l~~~~g~~~~------f~i~~~~~ll~~v~~~~~~~et 1663 (1693)
+.|.++++.|.+.. +.+.+++.++..++.+++.+|+
T Consensus 357 igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 357 IGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999998886643 3444444444444444444444
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-13 Score=173.97 Aligned_cols=347 Identities=11% Similarity=-0.037 Sum_probs=208.7
Q ss_pred hhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhh----hchh-HHHHHHHHHHHHHHHHHHH
Q psy10222 1244 AGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLME----MYGR-RLTNLVLCIPFIMGWVIIS 1318 (1693)
Q Consensus 1244 ~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsD----r~GR-r~~ll~~~~l~~i~~ll~~ 1318 (1693)
.....+.+.+-++..-. +.+++++.+.+.+..+..+--++..|+.|.++| |+|| |+.++.+....+++..+.-
T Consensus 18 ~~~~~~~~~~~l~~yyt--~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf 95 (473)
T PRK10429 18 KDFAIGIVYMYLMYYYT--DVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLF 95 (473)
T ss_pred HhHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHH
Confidence 33444444443343333 367999999999999999999999999999999 6699 6777778888777766664
Q ss_pred hhhh------HHHHHHHHHHHhhhhhchhhhHhHHhhhcc-CCCcchhhhHHHHHHHHHHHHHHHHhhh--------hc-
Q psy10222 1319 LATE------VWVILAGRFLTGFALGLSSPVALVYIAETT-EPKYRGVLSALLCTAVAIGIFTAHLLGT--------FL- 1382 (1693)
Q Consensus 1319 ~a~~------~~~lli~R~l~Gig~g~~~~~~~~~i~e~~-p~~~Rg~~~~l~~~~~~lG~~lg~~lg~--------~l- 1382 (1693)
..++ +..+++.-.+.+++.......-.++..|+. ++++|.+..++-..+..+|..+.+.+.. .-
T Consensus 96 ~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~ 175 (473)
T PRK10429 96 SAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDR 175 (473)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 4332 335566667777777777778888999998 5889999998866666666444433221 11
Q ss_pred --hhHHHHHHhHHHHHHHHHHhcc-ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhh
Q psy10222 1383 --HWKTTSAVCALFPCASFIFAYF-TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTD 1459 (1693)
Q Consensus 1383 --~WR~~f~i~~i~~~v~lv~~~~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1459 (1693)
+|++...+.++..++..+..++ .||.++. .+. +.+ ++ ++
T Consensus 176 ~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~----~~~---------------~~~----------~~---------~~ 217 (473)
T PRK10429 176 GFGFQMFTLVLIAFFIVSTIITLRNVHEVYSS----DNQ---------------VSA----------EG---------SH 217 (473)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCceecCCc----ccc---------------ccc----------cc---------cC
Confidence 5788777777766655444433 6664310 000 000 00 00
Q ss_pred hhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10222 1460 KKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRI 1538 (1693)
Q Consensus 1460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr 1538 (1693)
.+.+...+..++++.++.-........ ...+....+.+++.+....+ ...........++.+++.++.+++.||
T Consensus 218 ~~~~~~~~~~~~n~~~~~ll~~~~~~~-----~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r 292 (473)
T PRK10429 218 LTLKDIVALIYKNDQLSCLLGMALAYN-----IASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKS 292 (473)
T ss_pred CCHHHHHHHHhcCHHHHHHHHHHHHHH-----HHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001112223334433222221111111 12233333444444433223 233344445567888899999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCc-----c--chhHHHH
Q psy10222 1539 FGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFP-----Q--ATRELGS 1611 (1693)
Q Consensus 1539 ~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p-----~--~~r~~a~ 1611 (1693)
+|+|+.+..+..+..++.+.+ ...... ...+.+... +.....+.......+..+++.+|..+ + +..|...
T Consensus 293 ~gkk~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~-i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~ 369 (473)
T PRK10429 293 LSRRILWAGASIFPVLSCGVL-LLMGLA-APHNALLIV-IAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAY 369 (473)
T ss_pred cCcHHHHHHHHHHHHHHHHHH-HHHhcc-CchhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHH
Confidence 999999888776655554443 111111 122222222 22223333333445666778888855 2 3346678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCc
Q psy10222 1612 GISTCFAFLTLFVVVKTGPLLFLSIGT 1638 (1693)
Q Consensus 1612 g~~~~~~~lg~~i~~~~~~~l~~~~g~ 1638 (1693)
+..++...++..+++.+.+.+++..|+
T Consensus 370 s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 370 SVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999987776
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-12 Score=162.50 Aligned_cols=406 Identities=11% Similarity=0.004 Sum_probs=218.2
Q ss_pred hhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHHHHHHHHHHhhh-
Q psy10222 1244 AGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMY-GRRLTNLVLCIPFIMGWVIISLAT- 1321 (1693)
Q Consensus 1244 ~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~-GRr~~ll~~~~l~~i~~ll~~~a~- 1321 (1693)
..+....+...+|.... +++|.++.+.+++.+.+.....++++++|+++||+ |||++++.+.++..++.++.+..+
T Consensus 21 e~fs~Yg~~~~L~~yL~--~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~ 98 (493)
T PRK15462 21 EYFSFYGMRALLILYLT--NQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEI 98 (493)
T ss_pred HHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333334444554432 25889999999999999999999999999999999 999999999999999988777643
Q ss_pred hHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCC--cchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHHH
Q psy10222 1322 EVWVILAGRFLTGFALGLSSPVALVYIAETTEPK--YRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFP 1395 (1693)
Q Consensus 1322 ~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~--~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~ 1395 (1693)
+...+.++-.+.++|.|...+...++++|.+|++ +|..+.++.....++|..++|.+.+++ |||+.|++.++..
T Consensus 99 ~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm 178 (493)
T PRK15462 99 HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGM 178 (493)
T ss_pred chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 2233444445555667777787889999999976 699999999999999999999999887 8999999876544
Q ss_pred HHHHHHhcc----ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHH-HHHHH-hhhhcccccchhhhhhhhh----h
Q psy10222 1396 CASFIFAYF----TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFK-SMLNH-AERSTITKSENMTDKKKKL----E 1465 (1693)
Q Consensus 1396 ~v~lv~~~~----lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~----~ 1465 (1693)
++.++..++ +++.... ++...++ ++........- ..-.... ..... ...+..........-.... -
T Consensus 179 ~l~li~~~~~~~~l~~~~~~--~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (493)
T PRK15462 179 IAGLVIFLCGNRHFTHTRGV--NKKVLRA-TNFLLPNWGWL-LVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKI 254 (493)
T ss_pred HHHHHHHHHhhhhhccCCCC--CCCCchh-hhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332222 1111000 0000000 00000000000 0000000 00000 0000000000000000000 0
Q ss_pred hhHhhcccCchHHHHHHHHHHHHH--HhhhhHHHHHhHHHHHhhc------CCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q psy10222 1466 WKKNILCTEFLKPLAIILVFFFVQ--QFSGLNTLIFYTVGISKEV------SPDVNEYTATIVIDIVRVVMAFVTCGLLR 1537 (1693)
Q Consensus 1466 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~------g~s~~~~~~~~~~~i~~~ig~~~~g~l~d 1537 (1693)
.... .++.-|+|......+.... .+..+.....-...+.++. |++..+........+..++.+++..++-.
T Consensus 255 ~~~~-~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~ 333 (493)
T PRK15462 255 YRKA-ENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVK 333 (493)
T ss_pred HHhc-CCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 0000 0111122322222221111 1111111111122222221 33433444455566666666666666655
Q ss_pred hcCC--hh-----HHHHHHHHHHHHHHHHHHHHHH-hhc-cCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhH
Q psy10222 1538 IFGR--RP-----LALLSCLGTCLSLLGVASILKF-MQG-LLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRE 1608 (1693)
Q Consensus 1538 r~gr--r~-----~l~~~~~~~~i~~~~~~~~~~~-~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~ 1608 (1693)
|..| |. -..+|.+.++++.+.+ ..... ... ...+...++...++...+-....|+..+.++++.|++.|+
T Consensus 334 ~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l-~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g 412 (493)
T PRK15462 334 ESVAGNRTVRIWGKFALGLGLMSAGFCIL-TLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTG 412 (493)
T ss_pred HHhcCCCCCCcHHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHH
Confidence 6532 21 2566777777776655 22222 111 1123333555666667888889999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHh------------cCcchhHHHHHHHHHHH-HHHHh
Q psy10222 1609 LGSGISTCFA-FLTLFVVVKTGPLLFLS------------IGTPETFGLYGCITAFG-FVFLY 1657 (1693)
Q Consensus 1609 ~a~g~~~~~~-~lg~~i~~~~~~~l~~~------------~g~~~~f~i~~~~~ll~-~v~~~ 1657 (1693)
..+|+..... .++..++..+....... ..+...|...+...++. .++.+
T Consensus 413 ~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 475 (493)
T PRK15462 413 VLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALACVGVVLM 475 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999985533 45555554444433110 12334566666666555 44443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-14 Score=180.66 Aligned_cols=329 Identities=14% Similarity=0.090 Sum_probs=216.5
Q ss_pred hHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhc------chh
Q psy10222 304 FSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSA------TKV 377 (1693)
Q Consensus 304 ~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a------~s~ 377 (1693)
..+...|.+.++ +|++.++.+++.+.. ..+...+++.|++.||+|||++++++.+++++|+++++++ +++
T Consensus 45 ~fsv~s~~L~~~---lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~ 120 (591)
T PTZ00207 45 AFNLISGAMQAR---YNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSV 120 (591)
T ss_pred HHHHHHHHHHHH---hCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcH
Confidence 345667788887 999999999998774 4556788889999999999999999999999999999998 789
Q ss_pred HHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHH-HhhhhcccccccCeEEEeecC-------
Q psy10222 378 WLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILV-SHLLDHLPTVRHLGLVMALVG------- 449 (1693)
Q Consensus 378 ~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~l-gp~lg~~l~~~~gWr~~f~i~------- 449 (1693)
+++.+.|+++|+|.+...+.+...+.+||| ++||+++|+..++.++|+++ +++..+++. .+|+..|++.
T Consensus 121 ~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv 197 (591)
T PTZ00207 121 VRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVV 197 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997 78999999999999999986 444455543 3566544433
Q ss_pred --------CCccccccc-------ccCcc------------c-cc-ccccc----------------------h------
Q psy10222 450 --------PLPQRSYLH-------LGNRL------------F-SF-SYLTG----------------------Y------ 472 (1693)
Q Consensus 450 --------~~p~~~~~~-------~~~~~------------~-~~-~~~~~----------------------~------ 472 (1693)
..|..+... ...+. + +. +.... .
T Consensus 198 ~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~ 277 (591)
T PTZ00207 198 GILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKV 277 (591)
T ss_pred HHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 111100000 00000 0 00 00000 0
Q ss_pred -------------------------------------------------------------------------hhHHHHH
Q psy10222 473 -------------------------------------------------------------------------CLFQLLA 479 (1693)
Q Consensus 473 -------------------------------------------------------------------------~~~~~~~ 479 (1693)
....+++
T Consensus 278 ~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wl 357 (591)
T PTZ00207 278 GFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWC 357 (591)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHH
Confidence 0001111
Q ss_pred HHHHHHHHHhhhhhhh-hhhhccccc-cc--CC--CC-cccccchhHHHHHHHHHHhhhhhchh---------HHHHHHH
Q psy10222 480 AAGPIFATLGSGMTSG-FSAVLLPQL-ES--AN--ST-IPITPEDGSWIACVLSCILMDLYGRR---------FTNLILC 543 (1693)
Q Consensus 480 ~~~~~~~~~~~~~~~~-~~~~~l~~~-~~--~~--~~-~~~~~~~g~~iG~~~~G~lsDr~GRk---------~~l~~~~ 543 (1693)
.+...+.+...+.... ....+...+ .. +. .. +.....++..+|.+..|.++...-|| -.+.+..
T Consensus 358 l~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~ 437 (591)
T PTZ00207 358 LLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPS 437 (591)
T ss_pred HHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 1111111111111100 000011111 11 11 11 34455678889999999888322221 1233333
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHH-Hhhhhh----
Q psy10222 544 VPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISH-LLGTFL---- 618 (1693)
Q Consensus 544 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~-~~~~~~---- 618 (1693)
+ +.++.++.++......+++.-++.|++.|...+.....++|+.. |+-|+...+..+...+|..+-. .+.+.+
T Consensus 438 ~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~e 515 (591)
T PTZ00207 438 V-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQ 515 (591)
T ss_pred H-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 55555555555433689999999999999999999999999999 8889888887777788877753 233322
Q ss_pred ----------h---hHHHHHHhHHHHHHHHHHhhcc
Q psy10222 619 ----------H---WKTASAVCALFPFISCIFVYST 641 (1693)
Q Consensus 619 ----------~---wr~~~~~~~~~~~i~~~~~~~l 641 (1693)
+ +|.++++.+..++++++....+
T Consensus 516 a~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l 551 (591)
T PTZ00207 516 ADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYV 551 (591)
T ss_pred HhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhe
Confidence 1 7889999988888887765443
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-13 Score=156.93 Aligned_cols=395 Identities=13% Similarity=0.071 Sum_probs=265.4
Q ss_pred CcchhhhHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHH
Q psy10222 1223 SSYVRCDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLT 1302 (1693)
Q Consensus 1223 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ 1302 (1693)
..+...|||.+++..++..+..++...-.++.-..... .++ +.+..-|+.-+|.+.+..-.+.+-|+.||+|-|..
T Consensus 36 ~~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~---~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a 111 (480)
T KOG2563|consen 36 GHRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNS---FYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTA 111 (480)
T ss_pred ccccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHH---Hhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHH
Confidence 34566789999999988888877776666666555553 445 77788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh------hhHH--HHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHH
Q psy10222 1303 NLVLCIPFIMGWVIISLA------TEVW--VILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFT 1374 (1693)
Q Consensus 1303 ll~~~~l~~i~~ll~~~a------~~~~--~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~l 1374 (1693)
.+++..+..+|+.+-..+ +.++ ..+.+..+.+.+.-..+....-..+-|+|+++|..+..+-.++..+|.++
T Consensus 112 ~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvav 191 (480)
T KOG2563|consen 112 LLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAV 191 (480)
T ss_pred HHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHH
Confidence 999999999999998776 3345 67788888888877777777788888999999999999988888888888
Q ss_pred HHHhhhhc----------hhHH--HHHHhHHHHHHHHHHhcc-ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHH
Q psy10222 1375 AHLLGTFL----------HWKT--TSAVCALFPCASFIFAYF-TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKS 1441 (1693)
Q Consensus 1375 g~~lg~~l----------~WR~--~f~i~~i~~~v~lv~~~~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 1441 (1693)
|.++...+ .|.. +|+....+..+.+++..+ .+|.|+. ..+.+....
T Consensus 192 g~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~t-----Pps~s~~~~---------------- 250 (480)
T KOG2563|consen 192 GFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPT-----PPSASQAAL---------------- 250 (480)
T ss_pred HhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-----CCchhHhhh----------------
Confidence 87776665 4666 455555555554444433 3443321 000000000
Q ss_pred HHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHH
Q psy10222 1442 MLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIV 1520 (1693)
Q Consensus 1442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~ 1520 (1693)
.+..-..+.++.++++++... .+.+....+.++...+.+.......|++ ..++.....
T Consensus 251 ----------------~~~~f~~si~~~~~n~~F~il-----~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l 309 (480)
T KOG2563|consen 251 ----------------QDASFPKSIKSCFKNRQFIIL-----AICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGAL 309 (480)
T ss_pred ----------------hcCcHHHHHHHHHcCccHHHH-----HHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHH
Confidence 001234456677777654322 2222223333344333333233333666 788889999
Q ss_pred HHHHHHHHHHHHHHhhhhcCChhHH-HHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhcc
Q psy10222 1521 IDIVRVVMAFVTCGLLRIFGRRPLA-LLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIG 1599 (1693)
Q Consensus 1521 ~~i~~~ig~~~~g~l~dr~grr~~l-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 1599 (1693)
..+++++++.++|.+.||.+.-+.. .+......++...+ . .......+.+.+...+...+++..+..|+..-+-.
T Consensus 310 ~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l---~-~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~Elgv 385 (480)
T KOG2563|consen 310 MIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLML---L-TCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGV 385 (480)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH---H-HhhccCCceEehhhhHHHHHHhhcCCCCcceeeee
Confidence 9999999999999999999765433 33222222221111 1 11112222333444555566777778888888888
Q ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cchhHHHHHHHHHHHHHHHhhhccCCCCCC
Q psy10222 1600 ELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIG----TPETFGLYGCITAFGFVFLYIFLPETKNKT 1667 (1693)
Q Consensus 1600 e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~g----~~~~f~i~~~~~ll~~v~~~~~~~et~~~~ 1667 (1693)
|.--|..-++..|+.+..+++.+++...+.+...+..+ +...-+.....+++..++..++.|+-|+++
T Consensus 386 E~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~ 457 (480)
T KOG2563|consen 386 ETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLR 457 (480)
T ss_pred eeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHh
Confidence 86555666889999999999999999998888887766 555556666666666666666655544443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-12 Score=165.39 Aligned_cols=320 Identities=10% Similarity=-0.002 Sum_probs=191.9
Q ss_pred CccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhc----hhHHHH-HHHHHHHHHHHHHHHh-----hh--hHHHHHHHHH
Q psy10222 1264 TIPITPEDGTWIASMASLPTFIACILGSFLMEMY----GRRLTN-LVLCIPFIMGWVIISL-----AT--EVWVILAGRF 1331 (1693)
Q Consensus 1264 ~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~----GRr~~l-l~~~~l~~i~~ll~~~-----a~--~~~~lli~R~ 1331 (1693)
.+++++.+.+.+.+...+..++..++.|.++||. |||+.+ +.+.+...+.+++... ++ ....+.+.-+
T Consensus 38 ~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (448)
T PRK09848 38 VAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYM 117 (448)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHH
Confidence 6789999999999999999999999999999996 777654 5555544444444321 11 1233445566
Q ss_pred HHhhhhhchhhhHhHHhhhccCC-CcchhhhHHHHHH-----HHHHHHHHHHhhhhc------hhHHHHHHhHHHHHHHH
Q psy10222 1332 LTGFALGLSSPVALVYIAETTEP-KYRGVLSALLCTA-----VAIGIFTAHLLGTFL------HWKTTSAVCALFPCASF 1399 (1693)
Q Consensus 1332 l~Gig~g~~~~~~~~~i~e~~p~-~~Rg~~~~l~~~~-----~~lG~~lg~~lg~~l------~WR~~f~i~~i~~~v~l 1399 (1693)
+.+++.+...+...++..|+.++ ++|.+..+.-..+ ..+|..++|+++... +|.....+.++++++..
T Consensus 118 ~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~ 197 (448)
T PRK09848 118 GLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLY 197 (448)
T ss_pred HHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 77888888887777777887755 6788876655432 335555666655432 12222223333333332
Q ss_pred HHh-ccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHH
Q psy10222 1400 IFA-YFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKP 1478 (1693)
Q Consensus 1400 v~~-~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1478 (1693)
+.. ...||+++ ++ . + +...+..++..++++.++.-
T Consensus 198 ~~~~~~~~e~~~----~~---------------~-~------------------------~~~~~~~~~~l~~n~~f~~~ 233 (448)
T PRK09848 198 FICFKSTRENVV----RI---------------V-A------------------------QPSLKISLQTLKRNRPLFML 233 (448)
T ss_pred HHHHcCcEeccC----CC---------------c-c------------------------CCCHHHHHHHHhCCchHHHH
Confidence 222 23566531 00 0 0 00011234556666654332
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhHHHHHhhc-CCCch-hHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHH
Q psy10222 1479 LAIILVFFFVQQFSGLNTLIFYTVGISKEV-SPDVN-EYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSL 1556 (1693)
Q Consensus 1479 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~s~~-~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~ 1556 (1693)
.....+. ...........|+++++. |.+.. .........++.+++.++.+++.||+|+|+.+..+..+..++.
T Consensus 234 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~ 308 (448)
T PRK09848 234 CIGALCV-----LISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGY 308 (448)
T ss_pred HHHHHHH-----HHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 2222222 222334444566666553 54422 2233333456677888999999999999999999887777766
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccc-------hhHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1557 LGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQA-------TRELGSGISTCFAFLTLFVVVKTG 1629 (1693)
Q Consensus 1557 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~a~g~~~~~~~lg~~i~~~~~ 1629 (1693)
+.+ . . ....+.+. ........+.+.....+..++..+|..|.+ .+|...++.+..+.+|..+++.+.
T Consensus 309 ~~~-~---~-~~~~~~~~-~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~ 382 (448)
T PRK09848 309 LLF-F---W-VSVWSLPV-ALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIP 382 (448)
T ss_pred HHH-H---H-cCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 554 1 1 11122232 222233333344444556677777777643 458899999999999999999999
Q ss_pred HHHHHhcCc
Q psy10222 1630 PLLFLSIGT 1638 (1693)
Q Consensus 1630 ~~l~~~~g~ 1638 (1693)
+.+++..|+
T Consensus 383 g~~l~~~G~ 391 (448)
T PRK09848 383 AFILGLSGY 391 (448)
T ss_pred HHHHHHcCC
Confidence 998887775
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.5e-15 Score=192.18 Aligned_cols=137 Identities=16% Similarity=0.157 Sum_probs=125.3
Q ss_pred hhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcc-----
Q psy10222 301 AVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSAT----- 375 (1693)
Q Consensus 301 ~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~----- 375 (1693)
.....+.++|.+.+. |+++.++.|++.+.+.++++++.++.+++.||+||||.+.+|++++++|++++++++
T Consensus 48 ~~g~~~~~l~~iek~---F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~ 124 (633)
T TIGR00805 48 YNGLVNSSLTTIERR---FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGR 124 (633)
T ss_pred HHHHHHhhchhhhhh---hCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCC
Confidence 345556677888777 999999999999999999999999999999999999999999999999999998874
Q ss_pred ----------------------------------------------hhHHHHHHHHHHhhhccccchhhhhhhccccCcc
Q psy10222 376 ----------------------------------------------KVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPK 409 (1693)
Q Consensus 376 ----------------------------------------------s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~ 409 (1693)
.+..++++|+++|+|.+..++.+.+++.|++|++
T Consensus 125 y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~ 204 (633)
T TIGR00805 125 YSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSK 204 (633)
T ss_pred ccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCcc
Confidence 2456788999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhhHHHHhhhhccccccc
Q psy10222 410 YRGAFLAVSSLAISSGILVSHLLDHLPTVRH 440 (1693)
Q Consensus 410 ~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~ 440 (1693)
+|++++|++.++..+|+++|+++++++.+.+
T Consensus 205 ~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~ 235 (633)
T TIGR00805 205 NSPLYIGILESIAVFGPAFGYLLGSFCLQIY 235 (633)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence 9999999999999999999999999987643
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.7e-14 Score=158.07 Aligned_cols=296 Identities=14% Similarity=0.066 Sum_probs=200.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhccccchhhhh
Q psy10222 321 ITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCVGRFLTGLSIGFLTPPAIV 400 (1693)
Q Consensus 321 ~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~~R~l~Gig~g~~~~~~~a 400 (1693)
.+..-.|.+++.|.+..+++.+.+|.++||+|||++++++++.-++..++-+++.||..+++.|++.|+.-|- ..+..+
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~rA 143 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIRA 143 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHHH
Confidence 3445578999999999999999999999999999999999999999999999999996667779999998776 577889
Q ss_pred hhccccCcccchhHHHHHHHHHHhhHHHHhhhhccccc---ccCeEEEeec-C----------------CCccccccccc
Q psy10222 401 YIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTV---RHLGLVMALV-G----------------PLPQRSYLHLG 460 (1693)
Q Consensus 401 ~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~---~~gWr~~f~i-~----------------~~p~~~~~~~~ 460 (1693)
+++|.+++|+|+++|+.++.++++|-++||.+||++.+ ..| +.+|.. . -+|+......+
T Consensus 144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~ 222 (451)
T KOG2615|consen 144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKR 222 (451)
T ss_pred HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCccccchhh
Confidence 99999999999999999999999999999999999977 222 111111 0 11221111100
Q ss_pred C---ccc-----c---ccccc---------chhhHH-HHHHHHHHHHHHhhhhhhhhhhhccccc-----ccC---CCCc
Q psy10222 461 N---RLF-----S---FSYLT---------GYCLFQ-LLAAAGPIFATLGSGMTSGFSAVLLPQL-----ESA---NSTI 511 (1693)
Q Consensus 461 ~---~~~-----~---~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~---~~~~ 511 (1693)
+ ... + ..+.. ...... .-......+..+.+-..+.......+.+ +.+ ...+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~v 302 (451)
T KOG2615|consen 223 NDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKV 302 (451)
T ss_pred cccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheee
Confidence 0 000 0 00000 000000 1111112222222211111111111111 111 1112
Q ss_pred ccccchhHHHHHHHHHHhhhhhc--hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccC
Q psy10222 512 PITPEDGSWIACVLSCILMDLYG--RRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTE 589 (1693)
Q Consensus 512 ~~~~~~g~~iG~~~~G~lsDr~G--Rk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p 589 (1693)
......++.+-.....+..||.. -+-.+..+..++.-..++.+.+....++.++..+..+......+....++....|
T Consensus 303 l~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~ 382 (451)
T KOG2615|consen 303 LSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGP 382 (451)
T ss_pred eehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCC
Confidence 22333333333444445555555 4556666666666666677777777888889999999888889999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10222 590 PRYRGAILAIVSLAISSGIFISHLLGTFL 618 (1693)
Q Consensus 590 ~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~ 618 (1693)
++.||.+.++......++-.+||.+++..
T Consensus 383 ~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i 411 (451)
T KOG2615|consen 383 QSQRGTLNGIFRSLGALARAIGPLVSGVI 411 (451)
T ss_pred cccchHHHHHHHHHHHHHHHhhhhhhhee
Confidence 99999999999999999999999998554
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-13 Score=170.97 Aligned_cols=324 Identities=15% Similarity=0.076 Sum_probs=201.3
Q ss_pred chHHHhhhhhhhhhHh-hhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccc----cCCch-hHHHHHHHH
Q psy10222 291 PIMGDFSSGTAVGFSA-VLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDS----CGRRF-SNLILCIPF 364 (1693)
Q Consensus 291 ~~~~~~~~~l~~~~~~-~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~----~Grr~-vl~~~l~~~ 364 (1693)
.+++....+.....++ ++.+.+.+. +|+++.++|.+.....+.-++..|+.|+++|| +|||| .++.+.+.+
T Consensus 14 yg~g~~~~~~~~~~~~~~l~~~~t~~---~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~ 90 (444)
T PRK09669 14 YGLGDTACNLVWQTVMLFLAYFYTDV---FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPF 90 (444)
T ss_pred hcchhhhhhHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHH
Confidence 3444444444444443 345555555 89999999999999999999999999999998 77754 466788888
Q ss_pred HHHHHHHHhcch------hHHHHHHHHHHhhhccccchhhhhhhcccc-CcccchhHHHHHHHHHHhhHHHHhh----hh
Q psy10222 365 VLGWIIISSATK------VWLLCVGRFLTGLSIGFLTPPAIVYIAETS-EPKYRGAFLAVSSLAISSGILVSHL----LD 433 (1693)
Q Consensus 365 ~~~s~l~~~a~s------~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~-p~~~rg~a~g~~~~~~~~g~~lgp~----lg 433 (1693)
+++.++....|+ ++++++...+.+.+.....++..++.+|+. +++||++..++-..+..+|..+++. +.
T Consensus 91 ~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~ 170 (444)
T PRK09669 91 GVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLV 170 (444)
T ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877666653 466777787888777777778889999998 6688999888877666666655554 33
Q ss_pred cccc---cccCeEEEeecC-------------CCcccccccccCccccc-ccc-cchhhHHHHHHHHHHH-HHHhhhhhh
Q psy10222 434 HLPT---VRHLGLVMALVG-------------PLPQRSYLHLGNRLFSF-SYL-TGYCLFQLLAAAGPIF-ATLGSGMTS 494 (1693)
Q Consensus 434 ~~l~---~~~gWr~~f~i~-------------~~p~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~ 494 (1693)
..+. ...||+..+.+. ..++... +...++.+. +.. ...+.+.+.......+ .........
T Consensus 171 ~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~-~~~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~ 249 (444)
T PRK09669 171 DILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYT-PEVDNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRG 249 (444)
T ss_pred HHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecC-CCCcCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHh
Confidence 3332 245787655432 1111100 000000000 000 0011222222222211 111111111
Q ss_pred hhhhhcccccccCCC---CcccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHH
Q psy10222 495 GFSAVLLPQLESANS---TIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSM--ATEVWLICVGRFLT 569 (1693)
Q Consensus 495 ~~~~~~l~~~~~~~~---~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~--~~~~~~l~~~r~l~ 569 (1693)
....++......... .+........+++.+++++++||+|+|+.+..+.+..++..+...+ .++.+.+++..++.
T Consensus 250 ~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 329 (444)
T PRK09669 250 GATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILF 329 (444)
T ss_pred hhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 112222221111111 1112223455678889999999999999988877665544333333 34677778888999
Q ss_pred HhhhhCChhHHHHHHHhccC-------cchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10222 570 GLSVGLSSPPSIVYIAESTE-------PRYRGAILAIVSLAISSGIFISHLLGTFL 618 (1693)
Q Consensus 570 G~~~g~~~~~~~~~~~E~~p-------~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~ 618 (1693)
|++.+...+...++++|..+ .+..|...+..++...+|..+++.+.+.+
T Consensus 330 g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 330 NFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875 33457778888888888888888766543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-12 Score=160.93 Aligned_cols=309 Identities=12% Similarity=0.094 Sum_probs=194.7
Q ss_pred hhHhhhhHHh-hhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhcccc-CCchhHHHHHHHHHHHHHHHHhcc-hhHH
Q psy10222 303 GFSAVLLPQL-QSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSC-GRRFSNLILCIPFVLGWIIISSAT-KVWL 379 (1693)
Q Consensus 303 ~~~~~~~P~l-~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~-Grr~vl~~~l~~~~~~s~l~~~a~-s~~~ 379 (1693)
+.....+|.. .+. +|.++.+.+++.+.+.....+++++.|+++||+ ||||++.+|.++.+++.++.+..+ +...
T Consensus 26 Yg~~~~L~~yL~~~---lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~ 102 (493)
T PRK15462 26 YGMRALLILYLTNQ---LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSF 102 (493)
T ss_pred HHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhH
Confidence 3333445544 344 899999999999999999999999999999999 999999999999999998887654 2233
Q ss_pred HHHHHHHHhhhccccchhhhhhhccccCcc--cchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecCC-------
Q psy10222 380 LCVGRFLTGLSIGFLTPPAIVYIAETSEPK--YRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVGP------- 450 (1693)
Q Consensus 380 ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~--~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~~------- 450 (1693)
++++-.+.++|.|...+...++++|+||++ +|..+.++..++..+|..++|.+.+++.+.+|||+.|.+..
T Consensus 103 ~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~l 182 (493)
T PRK15462 103 LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGL 182 (493)
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH
Confidence 454555566777777788889999999876 79999999999999999999999999999999999887640
Q ss_pred ------Ccccccc-cccCccccccccc---------------------------------------------------ch
Q psy10222 451 ------LPQRSYL-HLGNRLFSFSYLT---------------------------------------------------GY 472 (1693)
Q Consensus 451 ------~p~~~~~-~~~~~~~~~~~~~---------------------------------------------------~~ 472 (1693)
.+..... ..++++.+.++.. ..
T Consensus 183 i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (493)
T PRK15462 183 VIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQK 262 (493)
T ss_pred HHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 0000000 0000000000000 00
Q ss_pred hhHHHHHHHHHHHHHHhh--hhhhhhhhhccccc--ccCCC----------CcccccchhHHHHHHHHHHhhhhhch--h
Q psy10222 473 CLFQLLAAAGPIFATLGS--GMTSGFSAVLLPQL--ESANS----------TIPITPEDGSWIACVLSCILMDLYGR--R 536 (1693)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~--~~~~~----------~~~~~~~~g~~iG~~~~G~lsDr~GR--k 536 (1693)
.+++..+..........+ .+.....+ +..+ ++.+. .++..+..-.++.+++.+++=.|.+| |
T Consensus 263 er~r~~~~~~l~~~~~~Fw~~~~Q~~~s--l~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~ 340 (493)
T PRK15462 263 QRKELGLIVTLTFFSMLFWAFAQQGGSS--ISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNR 340 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 000000000000000000 00000000 0000 00000 11222223344556666666555522 2
Q ss_pred ----H-HHHHHHHHHHHHHHHHHhc---------chHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHH
Q psy10222 537 ----F-TNLILCVPFVLGWVIMSMA---------TEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSL 602 (1693)
Q Consensus 537 ----~-~l~~~~~~~~i~~~~~~~~---------~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~ 602 (1693)
+ -+.+++++..++.+.+.++ .+.+++++.-++.++|--...|...+.+++.+|++.||.+++....
T Consensus 341 ~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l 420 (493)
T PRK15462 341 TVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYML 420 (493)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHH
Confidence 1 1456666666665544331 2567788899999999999999999999999999999999999866
Q ss_pred H-HHHHHHHHHHhhh
Q psy10222 603 A-ISSGIFISHLLGT 616 (1693)
Q Consensus 603 ~-~~lG~~~~~~~~~ 616 (1693)
. ..+|..++..+..
T Consensus 421 ~~~~~~~~~~g~~~~ 435 (493)
T PRK15462 421 LSGAIANYLAGVIAD 435 (493)
T ss_pred HHHHHHHHHHHHHHH
Confidence 4 3677766655544
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-13 Score=171.22 Aligned_cols=343 Identities=14% Similarity=0.111 Sum_probs=222.7
Q ss_pred HhhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccC-----CchhHHHHHHHHH-HHH
Q psy10222 295 DFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCG-----RRFSNLILCIPFV-LGW 368 (1693)
Q Consensus 295 ~~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~G-----rr~vl~~~l~~~~-~~s 368 (1693)
+++.|+.......+.|.+.++ +|++.++++...+...+.+.+-.+ +|+++||++ ||+.++++.++.+ ++.
T Consensus 35 y~~qGl~~l~~~~~~~~l~~~---lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~ 110 (468)
T TIGR00788 35 LFVKGIAGLMRLPLSPMLTDD---LGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILY 110 (468)
T ss_pred HHHhhHHHHhhhhhhHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHH
Confidence 456666644444566667777 999999999999999999998666 999999998 8888888877763 433
Q ss_pred HHHHhcchhHHHHH-HHHHHhhhccccchhhhhhhccccCcccchhHHHHHHH---HHHhhHHHHhhhhcccccccCeEE
Q psy10222 369 IIISSATKVWLLCV-GRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSL---AISSGILVSHLLDHLPTVRHLGLV 444 (1693)
Q Consensus 369 ~l~~~a~s~~~ll~-~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~---~~~~g~~lgp~lg~~l~~~~gWr~ 444 (1693)
...+..++...+.+ .+++.+++.+..-+++-+++.|..+ |+++...+..+. ...+|.++|+.++|.+.+++|||.
T Consensus 111 ~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~ 189 (468)
T TIGR00788 111 GLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRI 189 (468)
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 33344455444544 8899999999999999999999998 565554434433 345899999999999999999999
Q ss_pred EeecC------------CCcccc--cccccCcc-------cccc----c---ccc----hhhHHHHH-HHHHHH-HHHhh
Q psy10222 445 MALVG------------PLPQRS--YLHLGNRL-------FSFS----Y---LTG----YCLFQLLA-AAGPIF-ATLGS 490 (1693)
Q Consensus 445 ~f~i~------------~~p~~~--~~~~~~~~-------~~~~----~---~~~----~~~~~~~~-~~~~~~-~~~~~ 490 (1693)
+|++. ..++.+ ..+...+. .... . ... ..++.... .....+ .....
T Consensus 190 ~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~ 269 (468)
T TIGR00788 190 LFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLP 269 (468)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcC
Confidence 98774 111111 00000000 0000 0 000 01111111 111111 11111
Q ss_pred hhhhhhhhhcccc-cccCCC---CcccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhc----------
Q psy10222 491 GMTSGFSAVLLPQ-LESANS---TIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMA---------- 556 (1693)
Q Consensus 491 ~~~~~~~~~~l~~-~~~~~~---~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~---------- 556 (1693)
+...... .+.++ .+.+.. ........+.++|..+.+++.+|++.|+++.++.++.+++.+.....
T Consensus 270 ~~~~~~f-~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi 348 (468)
T TIGR00788 270 GASGSVF-CATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGI 348 (468)
T ss_pred CCCceeE-EEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCC
Confidence 1111000 01111 111111 12233446777889999999999999999999998888876543211
Q ss_pred chHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh----h-----hHH---HH
Q psy10222 557 TEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL----H-----WKT---AS 624 (1693)
Q Consensus 557 ~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~----~-----wr~---~~ 624 (1693)
++.+.+...-++.+++.+....+..++++|.+|++.+|+..++.+...++|..+++.+++.+ + ++. ..
T Consensus 349 ~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i 428 (468)
T TIGR00788 349 SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLI 428 (468)
T ss_pred CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHH
Confidence 23334556677888898888999999999999999999999999999999999999776655 2 332 33
Q ss_pred HHhHHHHHHHHHHhhcccC
Q psy10222 625 AVCALFPFISCIFVYSTPE 643 (1693)
Q Consensus 625 ~~~~~~~~i~~~~~~~lpE 643 (1693)
.++.++.++.+...+++|+
T Consensus 429 ~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 429 LGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 4445555666666667886
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.9e-11 Score=148.34 Aligned_cols=355 Identities=15% Similarity=0.163 Sum_probs=235.4
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHH-HHHHHHHHHHHHHhh--hhHHHHHHHHHHHhhhhhchhhhHhHH
Q psy10222 1271 DGTWIASMASLPTFIACILGSFLMEMYGRRLTNLV-LCIPFIMGWVIISLA--TEVWVILAGRFLTGFALGLSSPVALVY 1347 (1693)
Q Consensus 1271 ~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~-~~~l~~i~~ll~~~a--~~~~~lli~R~l~Gig~g~~~~~~~~~ 1347 (1693)
..++..++..+-.++..|+.|.++|+-||||.++. ...+..+++....+. .+++...+.-++.-++.+.....-.++
T Consensus 71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~ 150 (477)
T PF11700_consen 71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY 150 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888889999999999999999887665554 445555566666663 345555666666667778888888999
Q ss_pred hhhccCCCcc--------------------------hhhhHHHHHHHHHHHHHHHHhhhhc------------hhHHHHH
Q psy10222 1348 IAETTEPKYR--------------------------GVLSALLCTAVAIGIFTAHLLGTFL------------HWKTTSA 1389 (1693)
Q Consensus 1348 i~e~~p~~~R--------------------------g~~~~l~~~~~~lG~~lg~~lg~~l------------~WR~~f~ 1389 (1693)
+-|+.+++++ ++..+.-.....+|.++.-++.-.+ +-|..+.
T Consensus 151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~ 230 (477)
T PF11700_consen 151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL 230 (477)
T ss_pred hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence 9999999988 8888887777778877776654443 2477788
Q ss_pred HhHHHHHHHH-HHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhH
Q psy10222 1390 VCALFPCASF-IFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKK 1468 (1693)
Q Consensus 1390 i~~i~~~v~l-v~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1468 (1693)
+.++.-++.. ...+++||.|+. ++. +...... ....+..++
T Consensus 231 ~~a~ww~vfsiP~~~~~~~~~~~---~~~---------------~~~~~~~--------------------~~g~~~l~~ 272 (477)
T PF11700_consen 231 IVALWWLVFSIPLFLWLPDRPGP---RPL---------------PSGSSYL--------------------RFGFKRLWR 272 (477)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCC---CCC---------------CcchhHH--------------------HHHHHHHHH
Confidence 7777765544 344557887631 000 0000000 000111112
Q ss_pred hhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHh-hcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCCh--hH
Q psy10222 1469 NILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISK-EVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRR--PL 1544 (1693)
Q Consensus 1469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr--~~ 1544 (1693)
.+++.+..+ .+..+++.++....++.++......+.. ..|++ .+.....+...+..++|+++.+++.||+|.| ++
T Consensus 273 t~k~~~~~~-~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~ 351 (477)
T PF11700_consen 273 TFKEIRKLR-QLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRT 351 (477)
T ss_pred HHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH
Confidence 222211111 2223334444444567777777777776 45888 7777888888999999999999999999998 77
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHH
Q psy10222 1545 ALLSCLGTCLS-LLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLF 1623 (1693)
Q Consensus 1545 l~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~ 1623 (1693)
+..+.....+. ...+.+.........+.+. ..+..+..+.+..+.++..-++.+|+.|++..+.-.|+....++..++
T Consensus 352 l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~-f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~ 430 (477)
T PF11700_consen 352 LLISLILWIIIPLYGLFGFWPSFFGLKSPWE-FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSW 430 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCcccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHH
Confidence 66665555332 2222111111111223333 333444555666677788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHHHhhhccCCCCC
Q psy10222 1624 VVVKTGPLLFLSIG-TPETFGLYGCITAFGFVFLYIFLPETKNK 1666 (1693)
Q Consensus 1624 i~~~~~~~l~~~~g-~~~~f~i~~~~~ll~~v~~~~~~~et~~~ 1666 (1693)
++|++.+.+.+..| .+..+....++.+++.++. ..++..|++
T Consensus 431 lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~ 473 (477)
T PF11700_consen 431 LGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKGR 473 (477)
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhhh
Confidence 99999999999887 6777777777777776655 445554443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-12 Score=145.62 Aligned_cols=328 Identities=15% Similarity=0.075 Sum_probs=237.6
Q ss_pred hHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHHHH
Q psy10222 304 FSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCVG 383 (1693)
Q Consensus 304 ~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~~ 383 (1693)
.++.+++.+.++ +|+|.+.+|.+.+.=.+.+++..+...++..|+|.+|.+..++++.++|.++=... +...|+.+
T Consensus 30 svgPLL~~Ir~~---~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~g 105 (395)
T COG2807 30 SVGPLLDEIRQD---LGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLG 105 (395)
T ss_pred hhhhhHHHHHHH---hcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHH
Confidence 356788888888 99999999999999999999999999999999999999999999999999998887 78899999
Q ss_pred HHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhccccccc-CeEEEeecC----------CCc
Q psy10222 384 RFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRH-LGLVMALVG----------PLP 452 (1693)
Q Consensus 384 R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~-gWr~~f~i~----------~~p 452 (1693)
-++.|.|.+...+.--+++.+.|| ||-|..+|++.+....|.++++.+.-.+.++. |||....+- =.|
T Consensus 106 t~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlP 184 (395)
T COG2807 106 TLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLP 184 (395)
T ss_pred HHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999997 69999999999999999999999988888877 799544332 112
Q ss_pred ccccc-cccCcccccccc-cchhhHHHHHHHHHHHHHHhhhhhhhhhhhcccccccCC---CCcccccchhHHHHHHHHH
Q psy10222 453 QRSYL-HLGNRLFSFSYL-TGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQLESAN---STIPITPEDGSWIACVLSC 527 (1693)
Q Consensus 453 ~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~g~~iG~~~~G 527 (1693)
...+. ....+.....+. .-..+..|.......+..+.+....+|.+.++.+.+-+. ..+........+..++...
T Consensus 185 q~~r~~~~~~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P 264 (395)
T COG2807 185 QALREQAASIATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIP 264 (395)
T ss_pred hcccccccccccccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHH
Confidence 21111 111111111111 111233444555555555566666777777665443221 1222333445667788888
Q ss_pred Hhhhhh-chhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCc-chhhHHHHHHHHHHH
Q psy10222 528 ILMDLY-GRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEP-RYRGAILAIVSLAIS 605 (1693)
Q Consensus 528 ~lsDr~-GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~-~~Rg~~~~~~~~~~~ 605 (1693)
.+.+|. .+|+.......++.++..-..+.+....+.- -++.|+|.|+.++...+.+....+. +..+...++.|...+
T Consensus 265 ~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GY 343 (395)
T COG2807 265 LLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGY 343 (395)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhH
Confidence 888865 4677777777777777776667664332222 4899999999999999988877654 444555666666655
Q ss_pred HHHHHHHHhhhhh-----hhHHHHHHhHHHHHHHHHH
Q psy10222 606 SGIFISHLLGTFL-----HWKTASAVCALFPFISCIF 637 (1693)
Q Consensus 606 lG~~~~~~~~~~~-----~wr~~~~~~~~~~~i~~~~ 637 (1693)
+=...+|.+.+++ +|+..........+...+.
T Consensus 344 llAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 344 LLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIF 380 (395)
T ss_pred HHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 5556677777776 7998887776666555543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-12 Score=159.14 Aligned_cols=331 Identities=13% Similarity=0.011 Sum_probs=209.9
Q ss_pred ccccCCcccchhhHHHHHHHHHHHHHHHHhhhhcc----ccCCchhHHHH-HHHHHHHHHHHHhcchhHHHHH-------
Q psy10222 315 ANSTIPITTEDASWIASMAALPMAVACVLGCIAMD----SCGRRFSNLIL-CIPFVLGWIIISSATKVWLLCV------- 382 (1693)
Q Consensus 315 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----~~Grr~vl~~~-l~~~~~~s~l~~~a~s~~~ll~------- 382 (1693)
+...+|.+..+.+++.....+...+.+|+.|+++| |+||||.++.+ .+...++.++.+++++++.++.
T Consensus 30 yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~ 109 (477)
T TIGR01301 30 YVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKT 109 (477)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccc
Confidence 33448999999999999999999999999999999 59999998875 6666677778888887643322
Q ss_pred -----HHHHHhh-----hccccchhhhhhhccccCcccc--hhHHHHHHHHHHhhHHHHhhhhccc--cccc--------
Q psy10222 383 -----GRFLTGL-----SIGFLTPPAIVYIAETSEPKYR--GAFLAVSSLAISSGILVSHLLDHLP--TVRH-------- 440 (1693)
Q Consensus 383 -----~R~l~Gi-----g~g~~~~~~~a~i~~~~p~~~r--g~a~g~~~~~~~~g~~lgp~lg~~l--~~~~-------- 440 (1693)
.+++.|+ +.....++..++++|.+|+++| +++.++.+...++|.++|+.+|++. .+.+
T Consensus 110 ~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~ 189 (477)
T TIGR01301 110 KPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEAC 189 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccc
Confidence 3444444 7788888999999999998865 6899999999999999999999875 2222
Q ss_pred -----CeEEEeecC-------------CCccccccccc-------Cccccc----------ccccchhhHHHHHHHHHHH
Q psy10222 441 -----LGLVMALVG-------------PLPQRSYLHLG-------NRLFSF----------SYLTGYCLFQLLAAAGPIF 485 (1693)
Q Consensus 441 -----gWr~~f~i~-------------~~p~~~~~~~~-------~~~~~~----------~~~~~~~~~~~~~~~~~~~ 485 (1693)
+.|..|++. ..++......+ ++..+. +..+..++.........++
T Consensus 190 ~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqff 269 (477)
T TIGR01301 190 GVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCL 269 (477)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 334455544 11111100000 000000 0000111111111112222
Q ss_pred HHHhhhhhhhhhhhcccc--cccCC---CCcc----------cccchhHHHHHHHHHHhhhhhch-hHHHHHHHHHHHHH
Q psy10222 486 ATLGSGMTSGFSAVLLPQ--LESAN---STIP----------ITPEDGSWIACVLSCILMDLYGR-RFTNLILCVPFVLG 549 (1693)
Q Consensus 486 ~~~~~~~~~~~~~~~l~~--~~~~~---~~~~----------~~~~~g~~iG~~~~G~lsDr~GR-k~~l~~~~~~~~i~ 549 (1693)
..+.......+.+.+..+ ++.++ ..+. ........+.+++-.++.+|+|+ |....++.++.+++
T Consensus 270 sW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~ 349 (477)
T TIGR01301 270 NWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAIC 349 (477)
T ss_pred HHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 222111111122222111 11111 0010 01111222445667788999995 66667777777776
Q ss_pred HHHHHhcch---------------------HHHHHHHHHHHHhhhhCChhHHHHHHHhccCcc--hhhHHHHHHHHHHHH
Q psy10222 550 WVIMSMATE---------------------VWLICVGRFLTGLSVGLSSPPSIVYIAESTEPR--YRGAILAIVSLAISS 606 (1693)
Q Consensus 550 ~~~~~~~~~---------------------~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~--~Rg~~~~~~~~~~~l 606 (1693)
.....+..+ .+..++...+.|+........-+++++|..|++ ..|..+++.|.+..+
T Consensus 350 l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~l 429 (477)
T TIGR01301 350 LAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVI 429 (477)
T ss_pred HHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHH
Confidence 665554332 366778888999999999999999999999954 449999999999999
Q ss_pred HHHHHHHhhhhh------hhHHHHHHhHHHHHHHHHHhh-cccCCh
Q psy10222 607 GIFISHLLGTFL------HWKTASAVCALFPFISCIFVY-STPESP 645 (1693)
Q Consensus 607 G~~~~~~~~~~~------~wr~~~~~~~~~~~i~~~~~~-~lpESp 645 (1693)
.+++.++..+.+ +-...+.++++..+++.+..+ .+|..+
T Consensus 430 pQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 430 PQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred HHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999988766553 345577788888777766544 467643
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-11 Score=151.41 Aligned_cols=321 Identities=11% Similarity=0.053 Sum_probs=192.2
Q ss_pred CccCCcchhHHHHHHhHHHHHHHHHHHHHhhhh----chhH-HHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHH
Q psy10222 1264 TIPITPEDGTWIASMASLPTFIACILGSFLMEM----YGRR-LTNLVLCIPFIMGWVIISLATE------VWVILAGRFL 1332 (1693)
Q Consensus 1264 ~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr----~GRr-~~ll~~~~l~~i~~ll~~~a~~------~~~lli~R~l 1332 (1693)
..++++...+.+..+.-+--++.-|+.|.++|| +||| +.++.+....+++..++-..++ ...+.+.-.+
T Consensus 39 ~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~ 118 (460)
T PRK11462 39 IFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTL 118 (460)
T ss_pred hhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 678999999999999999999999999999995 7886 4555676777777766655543 3445566666
Q ss_pred HhhhhhchhhhHhHHhhhccC-CCcchhhhHHHHHHHHHHHHHHHHhhhhc-----------hhHHHHHHhHHHHHHHHH
Q psy10222 1333 TGFALGLSSPVALVYIAETTE-PKYRGVLSALLCTAVAIGIFTAHLLGTFL-----------HWKTTSAVCALFPCASFI 1400 (1693)
Q Consensus 1333 ~Gig~g~~~~~~~~~i~e~~p-~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l-----------~WR~~f~i~~i~~~v~lv 1400 (1693)
..++.......-.++..|+.+ +++|.+..++-..+..+|..+++.+...+ +|+....+.+++.++..+
T Consensus 119 ~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~ 198 (460)
T PRK11462 119 LTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLA 198 (460)
T ss_pred HHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 677777777777888999987 68999999999988888877775553221 578877777776655544
Q ss_pred Hhcc-ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHH
Q psy10222 1401 FAYF-TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPL 1479 (1693)
Q Consensus 1401 ~~~~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1479 (1693)
..++ .+|.++- . .+ +.+.+...+..++++.++. .
T Consensus 199 i~~~~~kE~~~~----~----------------~~------------------------~~~~~~~l~~~~~Nk~~~~-l 233 (460)
T PRK11462 199 FCFFTTKERVEA----P----------------PT------------------------TTSMREDLRDIWQNDQWRI-V 233 (460)
T ss_pred HHHhcceeccCC----C----------------cc------------------------CCCHHHHHHHHhCChHHHH-H
Confidence 4333 4553210 0 00 0001112234444444332 2
Q ss_pred HHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHH
Q psy10222 1480 AIILVFFFVQQFSGLNTLIFYTVGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGV 1559 (1693)
Q Consensus 1480 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~ 1559 (1693)
...................||..+.. +.............++.+++.++++++.||+++|+....+.....+..+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~y~~~y~~---g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~ 310 (460)
T PRK11462 234 GLLTIFNILAVCVRGGAMMYYVTWIL---GTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAM 310 (460)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhhhhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 21211221111111122222322221 222222334556677888899999999999999988765544333322222
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCc-----cchh--HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1560 ASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFP-----QATR--ELGSGISTCFAFLTLFVVVKTGPLL 1632 (1693)
Q Consensus 1560 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p-----~~~r--~~a~g~~~~~~~lg~~i~~~~~~~l 1632 (1693)
+ .. ...+.+......++ .+.......+..+++.+|..+ +..| +...+..++...++..+++.+.+.+
T Consensus 311 ---~-~~-~~~~~~~~~~~~~l-~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i 384 (460)
T PRK11462 311 ---F-FV-PMQASITMFVFIFV-IGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM 384 (460)
T ss_pred ---H-Hh-chhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 11212222222222 222333344555666666654 2244 4445666799999999999999999
Q ss_pred HHhcCc
Q psy10222 1633 FLSIGT 1638 (1693)
Q Consensus 1633 ~~~~g~ 1638 (1693)
++..|+
T Consensus 385 L~~~Gy 390 (460)
T PRK11462 385 LAYGGY 390 (460)
T ss_pred HHHcCC
Confidence 887666
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.8e-13 Score=143.48 Aligned_cols=387 Identities=17% Similarity=0.176 Sum_probs=231.5
Q ss_pred hhhHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhh-chhHHHHHH
Q psy10222 1227 RCDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEM-YGRRLTNLV 1305 (1693)
Q Consensus 1227 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr-~GRr~~ll~ 1305 (1693)
..+|.+++...|+..|-+.+.........-.+.+ |.+++.++..++-|.|.....+-+.++|++-|| +|-|..-++
T Consensus 39 l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~---d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii 115 (459)
T KOG4686|consen 39 LGHRFMALVFMCLLGFGSYFCYDAPGALQIDFKL---DSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTII 115 (459)
T ss_pred hhhHHHHHHHHHHhcccceeecCCchhhhhhhhc---ccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHH
Confidence 3466777777777666666666555444445553 788899999999999999999999999999996 787776555
Q ss_pred HHHHHHHHHHHHH---hhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc
Q psy10222 1306 LCIPFIMGWVIIS---LATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL 1382 (1693)
Q Consensus 1306 ~~~l~~i~~ll~~---~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l 1382 (1693)
-+....+|-++.+ ..+.+|+++++||+-|+|.-........|+.-|+..|+-+.++|+.....-+|...-..+-.++
T Consensus 116 ~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~l 195 (459)
T KOG4686|consen 116 LCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFL 195 (459)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHH
Confidence 5555556655544 4689999999999999998888888889999999999999999999998888876554433333
Q ss_pred -hhHHHHH---HhHHHHHHHHHHhccccCChHHHHhcCC-HHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchh
Q psy10222 1383 -HWKTTSA---VCALFPCASFIFAYFTPESPPWLASKGF-TVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENM 1457 (1693)
Q Consensus 1383 -~WR~~f~---i~~i~~~v~lv~~~~lpEsp~~l~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1457 (1693)
+.---++ .-..+++..++...-...|--.....+- .++|+..+++-.+..
T Consensus 196 y~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e~g~~------------------------- 250 (459)
T KOG4686|consen 196 YDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLEEGFL------------------------- 250 (459)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCcc-------------------------
Confidence 1000000 0001111111100000000000000010 011111111100000
Q ss_pred hhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHHh
Q psy10222 1458 TDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVMAFVTCGL 1535 (1693)
Q Consensus 1458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g~l 1535 (1693)
.+..+..... .+..+.+....+.++ ....+..+....|.++++ .|++ .+++.........+.+.+++.|.+
T Consensus 251 -Ge~pkLtdv~-----~f~ppfw~~~iicv~-yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i 323 (459)
T KOG4686|consen 251 -GEEPKLTDVN-----TFYPPFWVLVIICVL-YYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAI 323 (459)
T ss_pred -cCCccccccc-----ccCccHHHHHHHHHH-HHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHh
Confidence 0000100111 122222333333332 223355566677877776 4888 666666666677778888999999
Q ss_pred hhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHH
Q psy10222 1536 LRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGIST 1615 (1693)
Q Consensus 1536 ~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~ 1615 (1693)
+||+|++...+.+..+..+..=.. ......+++....++.+-........ |-.++-+.|.+.-|+|.|.+.
T Consensus 324 ~Dk~G~n~~wv~~a~~~tl~~H~~-----l~Ft~lsPy~~m~~lGLsysllAcsl----WP~va~~vpE~qLGTaygf~q 394 (459)
T KOG4686|consen 324 SDKYGFNLWWVASACILTLLGHSG-----LFFTFLSPYTSMTFLGLSYSLLACSL----WPCVASLVPEEQLGTAYGFIQ 394 (459)
T ss_pred HhhhcceehhHHHHHHHHHHHhhh-----HHhhhccHHHHHHHHhhhHHHHHHHH----hhhhhhhCCHHHhcchHHHHH
Confidence 999999987766544443332211 11122334444333333333333333 445666778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-c---chhHHHHHHHHHHHHHHHh
Q psy10222 1616 CFAFLTLFVVVKTGPLLFLSIG-T---PETFGLYGCITAFGFVFLY 1657 (1693)
Q Consensus 1616 ~~~~lg~~i~~~~~~~l~~~~g-~---~~~f~i~~~~~ll~~v~~~ 1657 (1693)
.+.++|-.+.|.+.+.+.+..| + ..-|...+.+++....+.+
T Consensus 395 sIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~ 440 (459)
T KOG4686|consen 395 SIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILF 440 (459)
T ss_pred HHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988766 2 2234444445555444444
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7e-12 Score=150.19 Aligned_cols=351 Identities=13% Similarity=0.100 Sum_probs=207.8
Q ss_pred CccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHH--HHHHHHH-Hhh----hhH-HHHHHHHHHHhh
Q psy10222 1264 TIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPF--IMGWVII-SLA----TEV-WVILAGRFLTGF 1335 (1693)
Q Consensus 1264 ~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~--~i~~ll~-~~a----~~~-~~lli~R~l~Gi 1335 (1693)
..|+|.++.|.+.++..+...+.+++.|.++||+|.|+-++..+.+. ..+.... .+. .|. ...+++-...|+
T Consensus 37 ~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~ 116 (412)
T PF01306_consen 37 VAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGL 116 (412)
T ss_dssp HH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTT
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999666544333222 2222221 222 232 233333334444
Q ss_pred hhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc---hhHHHHHHhHHHHHHHHHHhccc-cCChHH
Q psy10222 1336 ALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL---HWKTTSAVCALFPCASFIFAYFT-PESPPW 1411 (1693)
Q Consensus 1336 g~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l---~WR~~f~i~~i~~~v~lv~~~~l-pEsp~~ 1411 (1693)
...+..++.=+|+.++.. +.+.=.|-.-...++|.+++..++|.+ +=+..||+....+++..++.++. |+.++.
T Consensus 117 ~f~~~~~~~Ea~~er~sr--~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~ 194 (412)
T PF01306_consen 117 VFNAGVPLSEAYAERVSR--RNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQ 194 (412)
T ss_dssp TTTTHHHHHHHHHHHHHH--HHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSS
T ss_pred HHcccchHHHHHHHHHHH--HhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchh
Confidence 444555555555555542 222334445566778888888888877 66788888777766665554443 443311
Q ss_pred HHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHh
Q psy10222 1412 LASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQF 1491 (1693)
Q Consensus 1412 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1491 (1693)
....+ ... .++++.+.+...++++.++++.-.+......
T Consensus 195 ~~~~~---------------~~~---------------------~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~----- 233 (412)
T PF01306_consen 195 AEVAD---------------ALG---------------------AKKDKVSLKDVLSLFKMRNFWFFVLFVIGVA----- 233 (412)
T ss_dssp S-SST---------------TSS---------------------S------HHHHHHHTTSHHHHHHHHHHHHHH-----
T ss_pred hhhhc---------------ccc---------------------cCCCCCcHHHHHHHhcchhHHHHHHHHHHHH-----
Confidence 00000 000 0000111223455666655443222222221
Q ss_pred hhhHHHHHhHHHHHhhc----CCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHh
Q psy10222 1492 SGLNTLIFYTVGISKEV----SPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFM 1566 (1693)
Q Consensus 1492 ~~~~~~~~~~p~~~~~~----g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~ 1566 (1693)
+.++.+-...+.++... +.+ ...+......-+.+.+.-.++.++.+|+|.|+.++++..++++=.++. +
T Consensus 234 ~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~-~----- 307 (412)
T PF01306_consen 234 AIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGS-G----- 307 (412)
T ss_dssp HHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-H-----
T ss_pred HHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHH-h-----
Confidence 12333333344444433 222 224455556667788888899999999999999999888877766555 1
Q ss_pred hccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcchhHHHH
Q psy10222 1567 QGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGIS-TCFAFLTLFVVVKTGPLLFLSIGTPETFGLY 1645 (1693)
Q Consensus 1567 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~-~~~~~lg~~i~~~~~~~l~~~~g~~~~f~i~ 1645 (1693)
...+.+.....-.+...-..... ....-|+++.+|++..++...+. +....++.++.+...|.++|+.|++.+++++
T Consensus 308 -~~~~~~~i~~~klLH~~e~~l~l-va~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylim 385 (412)
T PF01306_consen 308 -FATNPWVISLIKLLHALEFPLLL-VAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIM 385 (412)
T ss_dssp -T--SHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHH
Confidence 12334444444444444333322 22346889999999999998886 5778899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCC
Q psy10222 1646 GCITAFGFVFLYIFLPETKN 1665 (1693)
Q Consensus 1646 ~~~~ll~~v~~~~~~~et~~ 1665 (1693)
+.+.+...++..+.++..++
T Consensus 386 g~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 386 GLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHheeeecCCCc
Confidence 99998888888877765544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.3e-12 Score=160.88 Aligned_cols=322 Identities=15% Similarity=0.114 Sum_probs=193.9
Q ss_pred chHHHhhhhhhhhhHh-hhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhcccc----CCchhH-HHHHHHH
Q psy10222 291 PIMGDFSSGTAVGFSA-VLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSC----GRRFSN-LILCIPF 364 (1693)
Q Consensus 291 ~~~~~~~~~l~~~~~~-~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~----Grr~vl-~~~l~~~ 364 (1693)
.+++...+.+...... ++.+.+.+. +|+++.++|.+.....+..++..++.|+++||. ||||.. ..+.+..
T Consensus 13 yg~g~~~~~~~~~~~~~~l~~y~~~~---~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~ 89 (448)
T PRK09848 13 YSLGDVANNFAFAMGALFLLSYYTDV---AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPL 89 (448)
T ss_pred hccchHHhHHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHH
Confidence 3344445555555443 344555555 899999999999999999999999999999996 777754 5565555
Q ss_pred HHHHHHHH-h----cch--hHHHHHHHHHHhhhccccchhhhhhhcccc-CcccchhHHHHHHHH-----HHhhHHHHhh
Q psy10222 365 VLGWIIIS-S----ATK--VWLLCVGRFLTGLSIGFLTPPAIVYIAETS-EPKYRGAFLAVSSLA-----ISSGILVSHL 431 (1693)
Q Consensus 365 ~~~s~l~~-~----a~s--~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~-p~~~rg~a~g~~~~~-----~~~g~~lgp~ 431 (1693)
.+.+++.- . +++ .+..+..-.+.+++.+...++..++..+.. +++||.+..++-+.+ ..++.+++|.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~ 169 (448)
T PRK09848 90 MIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPS 169 (448)
T ss_pred HHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544432 1 122 233455567888888888888778777665 557888886655432 3344555555
Q ss_pred hhcccc-----cccCeEEEeecC----------CCcccccccccCcccccc--cccchhhHHHHHHHHHHH-HHHhhhhh
Q psy10222 432 LDHLPT-----VRHLGLVMALVG----------PLPQRSYLHLGNRLFSFS--YLTGYCLFQLLAAAGPIF-ATLGSGMT 493 (1693)
Q Consensus 432 lg~~l~-----~~~gWr~~f~i~----------~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~ 493 (1693)
+++... ....|+..+.+. ..++.... +.+..... .....+.+.+.......+ ........
T Consensus 170 i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~ 247 (448)
T PRK09848 170 IKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVR--IVAQPSLKISLQTLKRNRPLFMLCIGALCVLISTFAV 247 (448)
T ss_pred HHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCC--CccCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 554321 122455322211 11211111 11110000 000111222222222111 11111222
Q ss_pred hhhhhhcccccccCCCC---cccc-cchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHH
Q psy10222 494 SGFSAVLLPQLESANST---IPIT-PEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMAT--EVWLICVGRF 567 (1693)
Q Consensus 494 ~~~~~~~l~~~~~~~~~---~~~~-~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~ 567 (1693)
....+.+..+..+.... +... ...+.+++.++.++++||+|+|+.+.++.++.+++.+...+.+ +.+.+.+..+
T Consensus 248 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~ 327 (448)
T PRK09848 248 SASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALA 327 (448)
T ss_pred hhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHH
Confidence 22222233222111111 1111 1345667889999999999999999999888887776666643 5677777788
Q ss_pred HHHhhhhCChhHHHHHHHhccCcc-------hhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy10222 568 LTGLSVGLSSPPSIVYIAESTEPR-------YRGAILAIVSLAISSGIFISHLLGTF 617 (1693)
Q Consensus 568 l~G~~~g~~~~~~~~~~~E~~p~~-------~Rg~~~~~~~~~~~lG~~~~~~~~~~ 617 (1693)
+.|+|.+...+...+..+|..|.+ ++|...++.++...+|..+++.+.+.
T Consensus 328 l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~ 384 (448)
T PRK09848 328 IASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF 384 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998754 45999999999999999888766543
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.6e-12 Score=156.65 Aligned_cols=324 Identities=15% Similarity=0.153 Sum_probs=224.1
Q ss_pred CccCCcchhHHHHHHhHHHHHHHHHHHHHhhh----hchhHHH-HHHHHHHHHHHHHHHHhh-h-------hHHHHHHHH
Q psy10222 1264 TIPITPEDGTWIASMASLPTFIACILGSFLME----MYGRRLT-NLVLCIPFIMGWVIISLA-T-------EVWVILAGR 1330 (1693)
Q Consensus 1264 ~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsD----r~GRr~~-ll~~~~l~~i~~ll~~~a-~-------~~~~lli~R 1330 (1693)
.+++++...+.+..+..+--++..|+.|.++| |+|||+. ++.+.....++..++... + ....+.+.-
T Consensus 31 ~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~ 110 (428)
T PF13347_consen 31 VLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFY 110 (428)
T ss_pred HcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHH
Confidence 67899999999999999999999999999999 8997654 456778888877777766 4 233457777
Q ss_pred HHHhhhhhchhhhHhHHhhhccC-CCcchhhhHHHHHHHHHHHHHHHHhhhhc-----------hhHHHHHHhHHHHHHH
Q psy10222 1331 FLTGFALGLSSPVALVYIAETTE-PKYRGVLSALLCTAVAIGIFTAHLLGTFL-----------HWKTTSAVCALFPCAS 1398 (1693)
Q Consensus 1331 ~l~Gig~g~~~~~~~~~i~e~~p-~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l-----------~WR~~f~i~~i~~~v~ 1398 (1693)
++..++.......-.++..|+.+ +++|.+..+.-..+..+|.++...+...+ +|++..++.+++.++.
T Consensus 111 ~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~ 190 (428)
T PF13347_consen 111 ILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVF 190 (428)
T ss_pred HHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHH
Confidence 77788888888888999999998 57899999998888888886554443332 5999999888888777
Q ss_pred HHHhcc-ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchH
Q psy10222 1399 FIFAYF-TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLK 1477 (1693)
Q Consensus 1399 lv~~~~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1477 (1693)
.+...+ .+|.++ +.++ ..++.+-+...+..+++|++++
T Consensus 191 ~~i~~~~~ke~~~------~~~~-----------------------------------~~~~~~~~~~~~~~~~nr~~~~ 229 (428)
T PF13347_consen 191 FLITFFFVKERSV------EVTE-----------------------------------QEKKISLRDSLRSLFRNRPFRI 229 (428)
T ss_pred hhhhhheeeeccc------cccc-----------------------------------cccccccccchhhhcccchHHH
Confidence 665544 677210 0000 0000111223455566655443
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc-CCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHH
Q psy10222 1478 PLAIILVFFFVQQFSGLNTLIFYTVGISKEV-SPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSL 1556 (1693)
Q Consensus 1478 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~s~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~ 1556 (1693)
-.....+.+. +......+.+++.+.. +.+...........++.+++.++.++++||+|+|+....+..+.+++.
T Consensus 230 l~~~~~~~~~-----~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~ 304 (428)
T PF13347_consen 230 LLLAFFLQWL-----AFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGF 304 (428)
T ss_pred HHHHHHHHHh-----hhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHH
Confidence 2222222222 2233333444555443 333344555667788889999999999999999999999988888877
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCcc-------chhHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1557 LGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQ-------ATRELGSGISTCFAFLTLFVVVKTG 1629 (1693)
Q Consensus 1557 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~a~g~~~~~~~lg~~i~~~~~ 1629 (1693)
+.+ .... . ++.+.........+..........+++.+|+.+. +..|...|+.++...++..+++.+.
T Consensus 305 ~~~-~~~~----~-~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~ 378 (428)
T PF13347_consen 305 LLL-FFLG----P-GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIV 378 (428)
T ss_pred HHH-HHHH----h-hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence 766 2211 1 2333444444455555556667788889998863 3358889999999999999999999
Q ss_pred HHHHHhcCcc
Q psy10222 1630 PLLFLSIGTP 1639 (1693)
Q Consensus 1630 ~~l~~~~g~~ 1639 (1693)
+.+++..|+.
T Consensus 379 g~~l~~~Gy~ 388 (428)
T PF13347_consen 379 GLLLALVGYD 388 (428)
T ss_pred HHHHHHhCcC
Confidence 9988876654
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.2e-11 Score=143.96 Aligned_cols=343 Identities=17% Similarity=0.146 Sum_probs=233.1
Q ss_pred hhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhh----chh-HHHHHHHHHHHHHHHHHHH
Q psy10222 1244 AGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEM----YGR-RLTNLVLCIPFIMGWVIIS 1318 (1693)
Q Consensus 1244 ~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr----~GR-r~~ll~~~~l~~i~~ll~~ 1318 (1693)
..........-+..... +.+++++...|.+..+--+--++.-|+.|.+.|| +|| ||.++.+...+++.+.++-
T Consensus 24 ~~~~~~~~~~yLl~fYT--dv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F 101 (467)
T COG2211 24 SNFAFGIVVLYLLFFYT--DVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLF 101 (467)
T ss_pred HHHHHHHHHHHHHHHHh--cccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHH
Confidence 33344444444455443 4689999999988888888889999999999995 776 5667778899999999998
Q ss_pred hhhh------HHHHHHHHHHHhhhhhchhhhHhHHhhhccC-CCcchhhhHHHHHHHHHHHHHHHHhhhhc---------
Q psy10222 1319 LATE------VWVILAGRFLTGFALGLSSPVALVYIAETTE-PKYRGVLSALLCTAVAIGIFTAHLLGTFL--------- 1382 (1693)
Q Consensus 1319 ~a~~------~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p-~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l--------- 1382 (1693)
.+++ ..-..+.-.+.|++-......-.++..|+.+ ++||.+..++-+.+..+|.++...+-..+
T Consensus 102 ~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~ 181 (467)
T COG2211 102 ITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDK 181 (467)
T ss_pred cCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 8874 3455677788888888888788888999986 68999999999999999966654332222
Q ss_pred --hhHHHHHHhHHHHHHHHHHhcc-ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhh
Q psy10222 1383 --HWKTTSAVCALFPCASFIFAYF-TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTD 1459 (1693)
Q Consensus 1383 --~WR~~f~i~~i~~~v~lv~~~~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1459 (1693)
||+..-++.++++++.++..++ .+|.+. ... ..++ ..+
T Consensus 182 ~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~---~~~----------------~~~~--------------------~~~ 222 (467)
T COG2211 182 ALGYQGTALVLGVIGVILLLFCFFNVKERVV---ETQ----------------PTKT--------------------GVK 222 (467)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcccC---ccc----------------cCcc--------------------ccc
Confidence 7888888888888877766665 666531 000 0000 000
Q ss_pred hhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc-CCC-chhHHHHHHHHHHHHHHHHHHHHhhh
Q psy10222 1460 KKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEV-SPD-VNEYTATIVIDIVRVVMAFVTCGLLR 1537 (1693)
Q Consensus 1460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~s-~~~~~~~~~~~i~~~ig~~~~g~l~d 1537 (1693)
.+.+......+++++.+...+...+ .+.+.+.......++.+.. |.+ ............+.+++.++..++.+
T Consensus 223 ~~~~~~~~~~~~Nrp~~~~l~~~l~-----~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~ 297 (467)
T COG2211 223 LKLKDSFLLIFKNRPLLLLLLMNLL-----LFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVK 297 (467)
T ss_pred ccHHHHHHHHHccchHHHHHHHHHH-----HHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 1111223345556554433332222 2222333333334444332 444 45556666677777778999999999
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCcc-------chhHHH
Q psy10222 1538 IFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQ-------ATRELG 1610 (1693)
Q Consensus 1538 r~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~a 1610 (1693)
|+|+|++..++.++.+++.+++ +... .++....++..+....+.....++.|+.++|...- +.-|..
T Consensus 298 ~~gkk~~~~~~~~~~~i~~~~~-----~f~~-~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~ 371 (467)
T COG2211 298 KFGKKKLFLIGLLLLAVGYLLL-----YFTP-AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIV 371 (467)
T ss_pred HhchHHHHHHHHHHHHHHHHHH-----Hhhc-CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhH
Confidence 9999999999988888888777 2222 22333344444555566667788999999988643 234777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q psy10222 1611 SGISTCFAFLTLFVVVKTGPLLFLSIGT 1638 (1693)
Q Consensus 1611 ~g~~~~~~~lg~~i~~~~~~~l~~~~g~ 1638 (1693)
.+...+++.+|.+++..+.++++...|+
T Consensus 372 ~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 372 YSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8889999999999999999999988775
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.7e-12 Score=147.18 Aligned_cols=316 Identities=15% Similarity=0.078 Sum_probs=225.0
Q ss_pred hhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHH---h
Q psy10222 297 SSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIIS---S 373 (1693)
Q Consensus 297 ~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~---~ 373 (1693)
..|.........+|.+++. ++++..|++.+...++.+|.++.++.+++.+|+|+|+-++.|+.++++|..+.. .
T Consensus 24 l~G~~~~l~diLip~l~~~---f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~ 100 (422)
T COG0738 24 LWGFITCLNDILIPHLKEV---FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS 100 (422)
T ss_pred HHHHHhhcchhhHHHHHHH---hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4445555567889999999 999999999999999999999999999999999999999999999999999984 5
Q ss_pred cchhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccc--------------
Q psy10222 374 ATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVR-------------- 439 (1693)
Q Consensus 374 a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~-------------- 439 (1693)
..++..++++=++.|.|.|..-.++..++....|+++..+-+++.+.-.++|.++||++++.++.+
T Consensus 101 ~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~ 180 (422)
T COG0738 101 SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAI 180 (422)
T ss_pred hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHH
Confidence 667889999999999999999999999999999999999999999999999999999999998762
Q ss_pred -----cCeEEEeecC--------------CCcccccccccC-cccccccccchhhHHHHHHHHHHHHHH-hhhhhhhhhh
Q psy10222 440 -----HLGLVMALVG--------------PLPQRSYLHLGN-RLFSFSYLTGYCLFQLLAAAGPIFATL-GSGMTSGFSA 498 (1693)
Q Consensus 440 -----~gWr~~f~i~--------------~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 498 (1693)
-.||.++... ..|+.+....+. +..+.......+.+++.....+.+... .......+..
T Consensus 181 ~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~ 260 (422)
T COG0738 181 KGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLV 260 (422)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 1255555442 222222111111 000101112223333333222222211 1222333333
Q ss_pred hcccccccCC----CCcccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhh
Q psy10222 499 VLLPQLESAN----STIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVG 574 (1693)
Q Consensus 499 ~~l~~~~~~~----~~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g 574 (1693)
.++.+.+..+ ..+......+.++|.+++-++..|+-..+.+...+++..+..+..+++++.. -+...++.|+..+
T Consensus 261 ~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v-~~~~l~~ig~F~s 339 (422)
T COG0738 261 SYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVV-ALYALFLIGLFNS 339 (422)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChH-HHHHHHHHHHHhH
Confidence 3333321111 1123344458889999998999999988888888877777777777777743 3455678899999
Q ss_pred CChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10222 575 LSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL 618 (1693)
Q Consensus 575 ~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~ 618 (1693)
..+|+.++...+..| ++- ...+..-.+..+|+.+.|.+.+.+
T Consensus 340 imfPTIfslal~~l~-~~t-s~~s~~l~maivGGAiiP~l~G~i 381 (422)
T COG0738 340 IMFPTIFSLALKNLG-EHT-SVGSGLLVMAIVGGAIIPPLQGVI 381 (422)
T ss_pred HHHHHHHHHHHhccC-ccc-cccceeeeeheecchHHHHHHHHH
Confidence 999999999999999 333 333444445556777777666665
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5e-12 Score=161.02 Aligned_cols=326 Identities=13% Similarity=0.110 Sum_probs=201.0
Q ss_pred cchHHHhhhhhhhhhHhhhhHH-hhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhcc----ccCC-chhHHHHHHH
Q psy10222 290 GPIMGDFSSGTAVGFSAVLLPQ-LQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMD----SCGR-RFSNLILCIP 363 (1693)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~P~-l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----~~Gr-r~vl~~~l~~ 363 (1693)
+.+++.....+....++..++. +.+. +|+++..+|.+....-+.-++..|+.|.++| |+|| |+.++.+.+.
T Consensus 10 ~yg~g~~~~~~~~~~~~~~l~~yyt~v---~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~ 86 (473)
T PRK10429 10 SYGFGAFGKDFAIGIVYMYLMYYYTDV---VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLA 86 (473)
T ss_pred hhccchhHHhHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHH
Confidence 3445555566655655554444 4444 7999999999999999999999999999999 5599 5557778888
Q ss_pred HHHHHHHHHhcch------hHHHHHHHHHHhhhccccchhhhhhhcccc-CcccchhHHHHHHHHHHhhHHHHhhhhccc
Q psy10222 364 FVLGWIIISSATK------VWLLCVGRFLTGLSIGFLTPPAIVYIAETS-EPKYRGAFLAVSSLAISSGILVSHLLDHLP 436 (1693)
Q Consensus 364 ~~~~s~l~~~a~s------~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~-p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l 436 (1693)
.+++.++.-..++ +.++++...+.+++.....++..+++.|.. +++||.+..++-.....+|..+.+.+...+
T Consensus 87 ~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~ 166 (473)
T PRK10429 87 NSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPF 166 (473)
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888766654332 446667778888888888899999999998 699999999986555555544433332211
Q ss_pred -------ccccCeEEEeecC-------------CCcccccccc--cC--ccccccc-cc-chhhHHHHHHHHHHHHH-Hh
Q psy10222 437 -------TVRHLGLVMALVG-------------PLPQRSYLHL--GN--RLFSFSY-LT-GYCLFQLLAAAGPIFAT-LG 489 (1693)
Q Consensus 437 -------~~~~gWr~~f~i~-------------~~p~~~~~~~--~~--~~~~~~~-~~-~~~~~~~~~~~~~~~~~-~~ 489 (1693)
.+..||+....+. ..++....+. .. ++.+.+. .. ..+.+.+...+...+.. ..
T Consensus 167 ~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~ 246 (473)
T PRK10429 167 VNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIA 246 (473)
T ss_pred HHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 1223566443322 1122110000 00 0011100 00 01122222222222211 22
Q ss_pred hhhhhhhhhhcccccccCCCC---cccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHh-----cchHHH
Q psy10222 490 SGMTSGFSAVLLPQLESANST---IPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSM-----ATEVWL 561 (1693)
Q Consensus 490 ~~~~~~~~~~~l~~~~~~~~~---~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~-----~~~~~~ 561 (1693)
..........+.......... +......+.+++.++.++++||+|||+.+..+..+.+++.+...+ ..+.+.
T Consensus 247 ~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
T PRK10429 247 SNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALL 326 (473)
T ss_pred HHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHH
Confidence 222222222222222111111 112223566788899999999999999998887766655544332 235666
Q ss_pred HHHHHHHHHhhhhCChhHHHHHHHhccC-------cchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10222 562 ICVGRFLTGLSVGLSSPPSIVYIAESTE-------PRYRGAILAIVSLAISSGIFISHLLGTFL 618 (1693)
Q Consensus 562 l~~~r~l~G~~~g~~~~~~~~~~~E~~p-------~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~ 618 (1693)
+++.-++.|++.+...+...++++|..+ .+..|...+...+..-+|..+++.+.+.+
T Consensus 327 ~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 327 IVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788999999999999999999966 44456788888888888888877665443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-11 Score=146.37 Aligned_cols=271 Identities=13% Similarity=0.050 Sum_probs=184.3
Q ss_pred HhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc---------------
Q psy10222 1318 SLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL--------------- 1382 (1693)
Q Consensus 1318 ~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l--------------- 1382 (1693)
+...+|..++++-|+.|.|.+..++.+..|+++..|++++.+.+++.+.++++|.+++|++++.+
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999988743
Q ss_pred -----hhHHHHHHhHHHHHHHHHHhcc--ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccc
Q psy10222 1383 -----HWKTTSAVCALFPCASFIFAYF--TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSE 1455 (1693)
Q Consensus 1383 -----~WR~~f~i~~i~~~v~lv~~~~--lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1455 (1693)
+||++|++.+.+.++..+.+.+ +||.++ ++.++. .+++
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~~------------------------~~~~------ 129 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVARV------------------------SSGD------ 129 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----cccccc------------------------cccc------
Confidence 5999999776665554444433 466421 000000 0000
Q ss_pred hhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc---CCC-chhHHHHHHHHHHHHHHHHH
Q psy10222 1456 NMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEV---SPD-VNEYTATIVIDIVRVVMAFV 1531 (1693)
Q Consensus 1456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---g~s-~~~~~~~~~~~i~~~ig~~~ 1531 (1693)
.. ..++.++++ ......+..+.+.+.-..+..|.+.++.+. |.+ .+.+........+.++|.++
T Consensus 130 ----~~---~~~~~~~~~-----~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~ 197 (310)
T TIGR01272 130 ----TT---QKTSAFQFT-----HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFI 197 (310)
T ss_pred ----cc---chhhHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00 001122221 222233444444444556677778777643 666 66677788888899999999
Q ss_pred HHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHH
Q psy10222 1532 TCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGS 1611 (1693)
Q Consensus 1532 ~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~ 1611 (1693)
.+++.||+++|+.+.++..+.++..+.. ... ... .... .....+++.....|...+...+.+|++ .+++.
T Consensus 198 ~~~l~~r~g~~~~l~~~~~l~~~~~~l~-----~~~--~~~-~~~~-~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~as 267 (310)
T TIGR01272 198 GSAVMPMISQGRYLAFNAFLAVLLSIGA-----ALT--HGY-VAMW-FVLALGLFNSIMFPTIFSLALNALGRH-TSQGS 267 (310)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHH-----HHc--CCH-HHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhH
Confidence 9999999999998877776666655333 111 111 1222 222344555566677677777777754 46677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q psy10222 1612 GISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYG 1646 (1693)
Q Consensus 1612 g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~f~i~~ 1646 (1693)
++. ..+.+|+.+.|.+.+.+.|..|.+.++++..
T Consensus 268 ai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 268 GIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 774 6788999999999999999889888776433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.4e-12 Score=157.68 Aligned_cols=322 Identities=18% Similarity=0.154 Sum_probs=223.1
Q ss_pred hHHHhhhhhhhhhHh-hhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhcc----ccCCchh-HHHHHHHHH
Q psy10222 292 IMGDFSSGTAVGFSA-VLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMD----SCGRRFS-NLILCIPFV 365 (1693)
Q Consensus 292 ~~~~~~~~l~~~~~~-~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----~~Grr~v-l~~~l~~~~ 365 (1693)
+.+...........+ ...+...+. +++++..+|.+....-+.-++..|+.|.++| |+||||. +++|.++.+
T Consensus 7 ~~g~~~~~~~~~~~~~~~~~f~~~~---~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~ 83 (428)
T PF13347_consen 7 GIGDLGYNMIWSLLSSYLLYFYTDV---LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLA 83 (428)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHH
Confidence 344444444444333 455555655 8999999999999999999999999999999 8997777 557888888
Q ss_pred HHHHHHHhc-c-------hhHHHHHHHHHHhhhccccchhhhhhhccccC-cccchhHHHHHHHHHHhhHHHHhhhhccc
Q psy10222 366 LGWIIISSA-T-------KVWLLCVGRFLTGLSIGFLTPPAIVYIAETSE-PKYRGAFLAVSSLAISSGILVSHLLDHLP 436 (1693)
Q Consensus 366 ~~s~l~~~a-~-------s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p-~~~rg~a~g~~~~~~~~g~~lgp~lg~~l 436 (1693)
++.+++... | ...++.+..++..++......+..++..|..+ ++||.+..+.-+....+|..+...+.+.+
T Consensus 84 ~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l 163 (428)
T PF13347_consen 84 LSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPIL 163 (428)
T ss_pred HHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Confidence 888888877 5 34456778888899999999999999999996 67999999999888888887666555554
Q ss_pred cccc-------CeEEEeecC-------------CCccc-ccccccCcccc----cccccchhhHHHHHHHHH-HHHHHhh
Q psy10222 437 TVRH-------LGLVMALVG-------------PLPQR-SYLHLGNRLFS----FSYLTGYCLFQLLAAAGP-IFATLGS 490 (1693)
Q Consensus 437 ~~~~-------gWr~~f~i~-------------~~p~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~ 490 (1693)
...+ +|++++++. ..++. ...+.+.+..+ .+...+. +.+...... .+..+..
T Consensus 164 ~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~~~~~~n--r~~~~l~~~~~~~~~~~ 241 (428)
T PF13347_consen 164 VSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSLRSLFRN--RPFRILLLAFFLQWLAF 241 (428)
T ss_pred hhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccccccchhhhccc--chHHHHHHHHHHHHhhh
Confidence 4322 577665543 11110 00011111111 1111112 222222222 2222222
Q ss_pred hhhhhhhhhcccccccCC---CCcccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcc--hHHHHHHH
Q psy10222 491 GMTSGFSAVLLPQLESAN---STIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMAT--EVWLICVG 565 (1693)
Q Consensus 491 ~~~~~~~~~~l~~~~~~~---~~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~ 565 (1693)
........++.......+ ..+......+.+++.++.++++||+|+|+++..+.++.+++.++..+.+ +.+.+++.
T Consensus 242 ~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 321 (428)
T PF13347_consen 242 ALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLIL 321 (428)
T ss_pred hhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 222222222322221111 2233455667889999999999999999999999999999988888775 89999999
Q ss_pred HHHHHhhhhCChhHHHHHHHhccC-------cchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10222 566 RFLTGLSVGLSSPPSIVYIAESTE-------PRYRGAILAIVSLAISSGIFISHLLGTFL 618 (1693)
Q Consensus 566 r~l~G~~~g~~~~~~~~~~~E~~p-------~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~ 618 (1693)
-++.|++.+.......++.+|..+ ++..|...++.++...+|..++..+.+.+
T Consensus 322 ~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 322 FILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred HHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999987 34458888999998888888887665543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-10 Score=135.50 Aligned_cols=384 Identities=14% Similarity=0.108 Sum_probs=235.8
Q ss_pred CccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhhhhhch
Q psy10222 1264 TIPITPEDGTWIASMASLPTFIACILGSFLMEMY-GRRLTNLVLCIPFIMGWVIISLAT--EVWVILAGRFLTGFALGLS 1340 (1693)
Q Consensus 1264 ~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~-GRr~~ll~~~~l~~i~~ll~~~a~--~~~~lli~R~l~Gig~g~~ 1340 (1693)
.++.++++..-+.+.|..-.-+..+++|+++||+ |+|+++..+.++..+|-++.+.+. +...+.++-.+.++|.|..
T Consensus 55 gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~ 134 (498)
T COG3104 55 GLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLF 134 (498)
T ss_pred cCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccc
Confidence 3779999998888888888888999999999995 999999999999999999999984 7889999999999999999
Q ss_pred hhhHhHHhhhccCCCc--chhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHHHHHHHHHhcccc--------
Q psy10222 1341 SPVALVYIAETTEPKY--RGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFPCASFIFAYFTP-------- 1406 (1693)
Q Consensus 1341 ~~~~~~~i~e~~p~~~--Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~~v~lv~~~~lp-------- 1406 (1693)
=+....+++|.+|+++ |-...+++.++.++|.+++|++.+++ +|++.|.+.++-....++.....+
T Consensus 135 K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~ 214 (498)
T COG3104 135 KPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGG 214 (498)
T ss_pred cccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCC
Confidence 9999999999998753 66677888999999999999998888 899999988876665554443321
Q ss_pred -CChHHHHhcCCHHHHHHHHHHHhCC---CCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhccc---CchHHH
Q psy10222 1407 -ESPPWLASKGFTVQAQQAFYWLRGH---TAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCT---EFLKPL 1479 (1693)
Q Consensus 1407 -Esp~~l~~~~~~~~a~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 1479 (1693)
+.|.-+..+.........+...-.. ................. ........+.++.+ .-|+|.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i-----------~~~~~~~~~~~~~~~~~~er~r~ 283 (498)
T COG3104 215 VPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISI-----------LIAIIYFAEAFRSPKVFDERRRL 283 (498)
T ss_pred CCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhccCccHHHHHHH
Confidence 1111111111100011111000000 00000000000000000 00000000111111 112222
Q ss_pred HH------HHHHHHHHHhhhhHHHHHhHHHHHhhc--CCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCh-------hH
Q psy10222 1480 AI------ILVFFFVQQFSGLNTLIFYTVGISKEV--SPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRR-------PL 1544 (1693)
Q Consensus 1480 ~~------~~~~~~~~~~~~~~~~~~~~p~~~~~~--g~s~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr-------~~ 1544 (1693)
+. ...+++..+-.....+..|.....+.. |++...........+.-++.+++..++..|.+++ .-
T Consensus 284 ~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~K 363 (498)
T COG3104 284 LAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIK 363 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchH
Confidence 22 222222222223334444444433332 3444455555556666666666666666664443 12
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhh--ccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHH
Q psy10222 1545 ALLSCLGTCLSLLGVASIL-KFMQ--GLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLT 1621 (1693)
Q Consensus 1545 l~~~~~~~~i~~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg 1621 (1693)
.-++...++.+.+.+ ... .+.. ....+.+..+....+..++-....|+...+++.+.|+...+..++........+
T Consensus 364 FalGl~l~g~~fl~l-~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~ 442 (498)
T COG3104 364 FALGLILAGLGFLIL-LLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAG 442 (498)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 345555555555555 222 1111 233455566667777888888999999999999999999999999887777777
Q ss_pred HHHHHHHHHH------HHHhcCcchhHHHHHHHHHHHHHHHhhh
Q psy10222 1622 LFVVVKTGPL------LFLSIGTPETFGLYGCITAFGFVFLYIF 1659 (1693)
Q Consensus 1622 ~~i~~~~~~~------l~~~~g~~~~f~i~~~~~ll~~v~~~~~ 1659 (1693)
..++..+.+. ..+.......|+.++.+.++..+.....
T Consensus 443 ~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~ 486 (498)
T COG3104 443 QTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLL 486 (498)
T ss_pred HHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 7776666552 3344455567777777777766655443
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-11 Score=145.83 Aligned_cols=383 Identities=14% Similarity=0.116 Sum_probs=225.0
Q ss_pred HHHHHHHHHhHhhhhhhhhhhhhh-hhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchh-HHHHHHHHH
Q psy10222 1231 LIAAGGPLTATLAAGSAGAYSAVL-LPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGR-RLTNLVLCI 1308 (1693)
Q Consensus 1231 ~~~~~~~~l~~~~~~~~~~~~~~~-lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GR-r~~ll~~~~ 1308 (1693)
|..+.+..+..++.+...++..+. -|.+++ -|.+.+.+..||+.++..+|.+++++++|.-+.|.|. |+.++.+.+
T Consensus 33 wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~--lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~i 110 (488)
T KOG2325|consen 33 WRSIYLALLNSFLVAVQFSIYLTSMWPYLQK--LDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFL 110 (488)
T ss_pred hHhHHHHHHHHHHHhhhheEEEeecchhhhh--cCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHH
Confidence 344444555566777777776554 466664 2577788889999999999999999999999999986 667899999
Q ss_pred HHHHHHHHH-Hhh---h-hHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc-
Q psy10222 1309 PFIMGWVII-SLA---T-EVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL- 1382 (1693)
Q Consensus 1309 l~~i~~ll~-~~a---~-~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l- 1382 (1693)
+..+|+++- +++ + .-+.++++|++.|+|.|. .+..-+|+++....++|.++++....+..+|.++||.++..+
T Consensus 111 i~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~ 189 (488)
T KOG2325|consen 111 IAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT 189 (488)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence 999999887 332 3 568899999999999665 678889999999999999999999988888888888776655
Q ss_pred -----h-----------hHHHHHHhHHHHHHHHHHhcc-ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q psy10222 1383 -----H-----------WKTTSAVCALFPCASFIFAYF-TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNH 1445 (1693)
Q Consensus 1383 -----~-----------WR~~f~i~~i~~~v~lv~~~~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 1445 (1693)
| ...+-|++++..++.++...+ ++|.++--..+ +. +++ ++.
T Consensus 190 ~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~----~~------------~~~---~~~--- 247 (488)
T KOG2325|consen 190 PLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDK----KK------------RSV---EEE--- 247 (488)
T ss_pred hhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCcccc----cc------------ccc---hhh---
Confidence 1 345668888888877665544 77775310000 00 000 000
Q ss_pred hhhhcccccchhhhhhhhhhhhHhhcccCc-hHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC--chhHHHHHHHH
Q psy10222 1446 AERSTITKSENMTDKKKKLEWKKNILCTEF-LKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD--VNEYTATIVID 1522 (1693)
Q Consensus 1446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s--~~~~~~~~~~~ 1522 (1693)
....+..+.++. +...+......+...+.....-..+.+......+.+ .......+...
T Consensus 248 ------------------~~~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~ 309 (488)
T KOG2325|consen 248 ------------------KSDIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLS 309 (488)
T ss_pred ------------------ccchhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHH
Confidence 000011111111 222233333333333332222333333333344554 22333344444
Q ss_pred HHHHHHHHH-HHHhhhh---cCChhHHHHHHHHHHHHHHHHHHHHHHhhccCc--------------hH-------HHHH
Q psy10222 1523 IVRVVMAFV-TCGLLRI---FGRRPLALLSCLGTCLSLLGVASILKFMQGLLP--------------SF-------MPVI 1577 (1693)
Q Consensus 1523 i~~~ig~~~-~g~l~dr---~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~--------------~~-------~~~~ 1577 (1693)
+.+++...+ ..+..-| +.+|..+..+................+...... .| ....
T Consensus 310 ~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~ 389 (488)
T KOG2325|consen 310 ISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLIL 389 (488)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhh
Confidence 444433332 2222233 233444444433222222221000000000000 00 0011
Q ss_pred HHHHHHHHHHhhc---cccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH
Q psy10222 1578 LLMFYMVFVSIGL---QQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFV 1654 (1693)
Q Consensus 1578 ~~~l~~~~~~~~~---~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v 1654 (1693)
....+...++.+. .....++-+|+..+..+++..++....+..+..++|.+....+...|+++...+.++..++...
T Consensus 390 ~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~ 469 (488)
T KOG2325|consen 390 YLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAA 469 (488)
T ss_pred heeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHH
Confidence 1111111111111 1223455678888899999999999999999999999999999999998776666655555444
Q ss_pred HH
Q psy10222 1655 FL 1656 (1693)
Q Consensus 1655 ~~ 1656 (1693)
+.
T Consensus 470 l~ 471 (488)
T KOG2325|consen 470 LW 471 (488)
T ss_pred HH
Confidence 43
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-10 Score=144.53 Aligned_cols=323 Identities=15% Similarity=0.025 Sum_probs=191.2
Q ss_pred cchHHHhhhhhhhhhHhhhh-HHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccc----cCCchh-HHHHHHH
Q psy10222 290 GPIMGDFSSGTAVGFSAVLL-PQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDS----CGRRFS-NLILCIP 363 (1693)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~-P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~----~Grr~v-l~~~l~~ 363 (1693)
+.+++....+.....++..+ ....+. .|+++..+|.+....-+.=++.-|+.|.++|| +||||. ++++.+.
T Consensus 13 ~Yg~g~~~~~~~~~~~~~~l~~fyt~~---~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~ 89 (460)
T PRK11462 13 GYGMGDAASHIIFDNVMLYMMFFYTDI---FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALP 89 (460)
T ss_pred hhccchhhhhHHHHHHHHHHHHHHHHh---hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHH
Confidence 44455555555555555434 444444 89999999999999999999999999999995 688777 4567788
Q ss_pred HHHHHHHHHhcch------hHHHHHHHHHHhhhccccchhhhhhhccccC-cccchhHHHHHHHHHHhhHHHHhhhhccc
Q psy10222 364 FVLGWIIISSATK------VWLLCVGRFLTGLSIGFLTPPAIVYIAETSE-PKYRGAFLAVSSLAISSGILVSHLLDHLP 436 (1693)
Q Consensus 364 ~~~~s~l~~~a~s------~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p-~~~rg~a~g~~~~~~~~g~~lgp~lg~~l 436 (1693)
++++.+++-..|+ +.++++.-.+..++-.....+-.++..|..+ ++||.+..++-+.+..+|..+++.+...+
T Consensus 90 ~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~pl 169 (460)
T PRK11462 90 FGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPL 169 (460)
T ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877765553 4566777788888888888899999999985 89999999999998888877766554333
Q ss_pred ccc-------cCeEEEeecC-------------CCcccccccccCccccccc--ccchhhHHHHHHHHHH-HHHHhhhhh
Q psy10222 437 TVR-------HLGLVMALVG-------------PLPQRSYLHLGNRLFSFSY--LTGYCLFQLLAAAGPI-FATLGSGMT 493 (1693)
Q Consensus 437 ~~~-------~gWr~~f~i~-------------~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~ 493 (1693)
... .||+....+. ..++... . +..+.+.+. ....+.+.+....... +........
T Consensus 170 v~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~-~-~~~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~ 247 (460)
T PRK11462 170 VNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVE-A-PPTTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVR 247 (460)
T ss_pred HHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccC-C-CccCCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 332 3566433322 1111110 0 000100110 0001122222221111 111111111
Q ss_pred hhhhhhcccccccCCC---CcccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHH
Q psy10222 494 SGFSAVLLPQLESANS---TIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMAT--EVWLICVGRFL 568 (1693)
Q Consensus 494 ~~~~~~~l~~~~~~~~---~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l 568 (1693)
.+...++......... .+......+.++|.+++++++||+|+|+.+..+..+..+..++..+.+ +...+.+.-++
T Consensus 248 ~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 327 (460)
T PRK11462 248 GGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFV 327 (460)
T ss_pred HhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 1111111111111111 112233456678889999999999999887655554444333333322 23344555567
Q ss_pred HHhhhhCChhHHHHHHHhccC-------cchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy10222 569 TGLSVGLSSPPSIVYIAESTE-------PRYRGAILAIVSLAISSGIFISHLLGTF 617 (1693)
Q Consensus 569 ~G~~~g~~~~~~~~~~~E~~p-------~~~Rg~~~~~~~~~~~lG~~~~~~~~~~ 617 (1693)
.|++.+...+...++..|..+ .+..|...+...+...+|..+++.+.+.
T Consensus 328 ~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~ 383 (460)
T PRK11462 328 IGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGW 383 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788877777766777777766 3334555566666677777777655443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.4e-10 Score=139.04 Aligned_cols=337 Identities=16% Similarity=0.176 Sum_probs=217.1
Q ss_pred hhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccC-CchhHHHHHHHHHHHHHHHHhcchhH
Q psy10222 300 TAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCG-RRFSNLILCIPFVLGWIIISSATKVW 378 (1693)
Q Consensus 300 l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~G-rr~vl~~~l~~~~~~s~l~~~a~s~~ 378 (1693)
+-.+..+...|.+....++.|.|.+|+|.+.+...+...++++++|.++||.+ +||++.+..++-++..++....++++
T Consensus 13 ~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~ 92 (400)
T PF03825_consen 13 LYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFW 92 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 34555667788888888889999999999999999999999999999999975 67888888888888777888899999
Q ss_pred HHHHHHHHHhhhccccchhhhhhhccccCc--ccchhHHHHHHHHHHhhHHH-HhhhhcccccccCeEEEeecC------
Q psy10222 379 LLCVGRFLTGLSIGFLTPPAIVYIAETSEP--KYRGAFLAVSSLAISSGILV-SHLLDHLPTVRHLGLVMALVG------ 449 (1693)
Q Consensus 379 ~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~--~~rg~a~g~~~~~~~~g~~l-gp~lg~~l~~~~gWr~~f~i~------ 449 (1693)
.++..-++..+......|.+-++..++..+ ++-|+.=-+=+.|+.++... +..+.+.. +..+....+++.
T Consensus 93 ~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~l 171 (400)
T PF03825_consen 93 WLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYL-GISGTSLIFYIAAILSLL 171 (400)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHHHHH
Confidence 999888888888888888888888888742 22233222222233333221 11222222 111111122221
Q ss_pred ------CCcccccccc---cCccc-ccccccchhhHHH-HHHHHHHHHHHhhhhhhhhhhhccccccc-CCCCcccccch
Q psy10222 450 ------PLPQRSYLHL---GNRLF-SFSYLTGYCLFQL-LAAAGPIFATLGSGMTSGFSAVLLPQLES-ANSTIPITPED 517 (1693)
Q Consensus 450 ------~~p~~~~~~~---~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~ 517 (1693)
..|..+.... ..++. ..+.....+.++. .......+....++..+++.+.++.+... ...........
T Consensus 172 l~~~~l~lp~~~~~~~~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l 251 (400)
T PF03825_consen 172 LAGFALFLPKTPPKRSAKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWAL 251 (400)
T ss_pred HHHHHHhCCCCccccccCCCcccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHH
Confidence 2232221000 00000 0000011112222 22334445555667667777767665542 11111111111
Q ss_pred ---hHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhc-chHHHHHHH----HHHHHhhhhCChhHHHHHHHhccC
Q psy10222 518 ---GSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMA-TEVWLICVG----RFLTGLSVGLSSPPSIVYIAESTE 589 (1693)
Q Consensus 518 ---g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~-~~~~~l~~~----r~l~G~~~g~~~~~~~~~~~E~~p 589 (1693)
+-++--...+++..|+|-|+++.++.+..++=+.+.+.. ++.+...+. ..+.|+..+........|+.|.+|
T Consensus 252 ~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p 331 (400)
T PF03825_consen 252 GVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAP 331 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCC
Confidence 122334578999999999999999999988888888776 454443333 456999999999999999999999
Q ss_pred cchhhHHHHHHHHH-HHHHHHHHHHhhhhh----------hhHHHHHHhHHHHHHHHHH
Q psy10222 590 PRYRGAILAIVSLA-ISSGIFISHLLGTFL----------HWKTASAVCALFPFISCIF 637 (1693)
Q Consensus 590 ~~~Rg~~~~~~~~~-~~lG~~~~~~~~~~~----------~wr~~~~~~~~~~~i~~~~ 637 (1693)
++.|+++.++++.. ..+|..++..+++.+ +|...+.+.++..++..+.
T Consensus 332 ~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~ 390 (400)
T PF03825_consen 332 PELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVL 390 (400)
T ss_pred ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999998765 578999998888776 3555666666655554444
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-09 Score=127.51 Aligned_cols=346 Identities=12% Similarity=0.054 Sum_probs=220.5
Q ss_pred cchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHH-HHHHHHHHHHHHhhhh---HHHHHHHHHHHhhhhhchhhhH
Q psy10222 1269 PEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVL-CIPFIMGWVIISLATE---VWVILAGRFLTGFALGLSSPVA 1344 (1693)
Q Consensus 1269 ~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~-~~l~~i~~ll~~~a~~---~~~lli~R~l~Gig~g~~~~~~ 1344 (1693)
.+..+...++..+-.++-+|+.|.++|..|+|+-.+.. ..+-.++.....++++ ++..++.-.+..++......--
T Consensus 57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy 136 (438)
T COG2270 57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY 136 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence 33457778888888889999999999999976655544 4444555555556654 5666788888999999999999
Q ss_pred hHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----------------------hhHHHHHHhHHHHHHHH-HH
Q psy10222 1345 LVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----------------------HWKTTSAVCALFPCASF-IF 1401 (1693)
Q Consensus 1345 ~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----------------------~WR~~f~i~~i~~~v~l-v~ 1401 (1693)
-+++.+..++++-++..++-.....+|..+.-+..... .=|..+.+.++.-++.. .+
T Consensus 137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm 216 (438)
T COG2270 137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM 216 (438)
T ss_pred hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence 99999999998877776665444445544443322100 35555665555544433 23
Q ss_pred hccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHH
Q psy10222 1402 AYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAI 1481 (1693)
Q Consensus 1402 ~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1481 (1693)
.+..|+.++- +.+. .. .+.+ .-++-+...++..+++ .+.
T Consensus 217 ~~~v~~~~~~---~~~~----------------~~----~l~~-------------g~k~L~~t~k~i~~~~-----~i~ 255 (438)
T COG2270 217 ILNVHDAEKI---SSPP----------------PT----ALRN-------------GFKELKSTFKEIRGRK-----NLV 255 (438)
T ss_pred Hhcccccccc---cccc----------------hH----HHHH-------------HHHHHHHHHHHHhccc-----chH
Confidence 3334443310 0000 00 0000 0001111222222222 233
Q ss_pred HHHHHHHHHhhhhHHHHHhHHHHHh-hcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHH
Q psy10222 1482 ILVFFFVQQFSGLNTLIFYTVGISK-EVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGV 1559 (1693)
Q Consensus 1482 ~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~ 1559 (1693)
.+.+..+...-+.+++......+-. ..|.+ .+.....+...+..++|+++.|++.||+|-|+++..+.++..+.++..
T Consensus 256 ~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~ 335 (438)
T COG2270 256 LFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYL 335 (438)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHH
Confidence 3334444445567777777777766 56888 778888888999999999999999999999999988887776665544
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-
Q psy10222 1560 ASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGT- 1638 (1693)
Q Consensus 1560 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~g~- 1638 (1693)
...... .......+..+.+..+.+...-.|..++.|++.-++..|+++..++..++++|...+.+.+..|-
T Consensus 336 -----~~~~~~---~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~ 407 (438)
T COG2270 336 -----IFLEGE---LDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSS 407 (438)
T ss_pred -----HHcccc---HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcch
Confidence 111111 22223334444555566777788999999999999999999999999999999999998887764
Q ss_pred chhHHHHHHHHHHHHHHHhhhccCCC
Q psy10222 1639 PETFGLYGCITAFGFVFLYIFLPETK 1664 (1693)
Q Consensus 1639 ~~~f~i~~~~~ll~~v~~~~~~~et~ 1664 (1693)
+..+....++.+++.+ .+...|+.+
T Consensus 408 r~g~~~i~vll~iGl~-~L~~v~~~~ 432 (438)
T COG2270 408 RAGVLSIIVLLLIGLL-LLLRVKVPG 432 (438)
T ss_pred hhHHHHHHHHHHhhHh-hEEeecCCC
Confidence 3334444444444433 334455543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=6e-11 Score=123.58 Aligned_cols=133 Identities=27% Similarity=0.467 Sum_probs=119.8
Q ss_pred HHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCC
Q psy10222 1276 ASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPK 1355 (1693)
Q Consensus 1276 ~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~ 1355 (1693)
.+.+.++..++.++.|++.||+|||+.+..+..+..++.+...++++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 45567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHHHHHHHHHhcc-ccCC
Q psy10222 1356 YRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFPCASFIFAYF-TPES 1408 (1693)
Q Consensus 1356 ~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~~v~lv~~~~-lpEs 1408 (1693)
+|++..++......+|..++|.+++.+ +||+.+++.....++..+...+ .||+
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999988877 8999999988887776655544 5653
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-09 Score=130.84 Aligned_cols=325 Identities=18% Similarity=0.175 Sum_probs=218.2
Q ss_pred cchHHHhhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccc----cCCchh-HHHHHHHH
Q psy10222 290 GPIMGDFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDS----CGRRFS-NLILCIPF 364 (1693)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~----~Grr~v-l~~~l~~~ 364 (1693)
+.+.+.+..+.....++..++..-.+ .+|+++..+|-+....-+.=++.-|+.|.+.|| +||+|. ++.+.+.+
T Consensus 16 ~Yg~gd~~~~~~~~~~~~yLl~fYTd--v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~ 93 (467)
T COG2211 16 GYGLGDFASNFAFGIVVLYLLFFYTD--VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPF 93 (467)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHhc--ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHH
Confidence 44555566666666666656555444 289999999999888888889999999999984 677666 77888999
Q ss_pred HHHHHHHHhcch------hHHHHHHHHHHhhhccccchhhhhhhcccc-CcccchhHHHHHHHHHHhhHHHHh----hhh
Q psy10222 365 VLGWIIISSATK------VWLLCVGRFLTGLSIGFLTPPAIVYIAETS-EPKYRGAFLAVSSLAISSGILVSH----LLD 433 (1693)
Q Consensus 365 ~~~s~l~~~a~s------~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~-p~~~rg~a~g~~~~~~~~g~~lgp----~lg 433 (1693)
++.+.++-.+|+ ....++...+.|++-.....+--++..+.. +++||.+..++-+.+..+|..+.. ++-
T Consensus 94 ~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv 173 (467)
T COG2211 94 AIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLV 173 (467)
T ss_pred HHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988884 456667789999999999999999999988 779999999999998888855433 332
Q ss_pred ccc-cc--ccCeEEEeecC-------------CCccccc--ccccC-cccccc--cccchhhHHHHHHHHHHHHHHhhhh
Q psy10222 434 HLP-TV--RHLGLVMALVG-------------PLPQRSY--LHLGN-RLFSFS--YLTGYCLFQLLAAAGPIFATLGSGM 492 (1693)
Q Consensus 434 ~~l-~~--~~gWr~~f~i~-------------~~p~~~~--~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (1693)
.++ -+ ..||+..-.+. ...++.. .+.+. .+.+.+ ...-++.+++.......+..+....
T Consensus 174 ~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~ 253 (467)
T COG2211 174 KLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFN 253 (467)
T ss_pred HHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 322 22 45777433221 1111111 11110 000111 0111233444333333332222221
Q ss_pred h-hhhhhhcccccccCCC----CcccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcc--hHHHHHHH
Q psy10222 493 T-SGFSAVLLPQLESANS----TIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMAT--EVWLICVG 565 (1693)
Q Consensus 493 ~-~~~~~~~l~~~~~~~~----~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~ 565 (1693)
. .+...++......... ........+.+++.++..++++|+|+|+++.++.++.+++.++..+.+ +...+++.
T Consensus 254 i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~ 333 (467)
T COG2211 254 IRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVA 333 (467)
T ss_pred HHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHH
Confidence 1 1222222221111111 122334446667799999999999999999999999999988888865 78888999
Q ss_pred HHHHHhhhhCChhHHHHHHHhccC-------cchhhHHHHHHHHHHHHHHHHHHHhhh
Q psy10222 566 RFLTGLSVGLSSPPSIVYIAESTE-------PRYRGAILAIVSLAISSGIFISHLLGT 616 (1693)
Q Consensus 566 r~l~G~~~g~~~~~~~~~~~E~~p-------~~~Rg~~~~~~~~~~~lG~~~~~~~~~ 616 (1693)
.++.++|.+...+..+++++|..+ .+.-|...+.+.++.=+|..++..+.+
T Consensus 334 ~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g 391 (467)
T COG2211 334 LIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPG 391 (467)
T ss_pred HHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998864 455578888888888788887765443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-09 Score=134.25 Aligned_cols=317 Identities=18% Similarity=0.160 Sum_probs=204.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHH-HHHHHHHhc-ch-hHHHHHHHHHHhhhccccchhhhhhh
Q psy10222 326 ASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFV-LGWIIISSA-TK-VWLLCVGRFLTGLSIGFLTPPAIVYI 402 (1693)
Q Consensus 326 ~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~-~~s~l~~~a-~s-~~~ll~~R~l~Gig~g~~~~~~~a~i 402 (1693)
.++..+...+..++..|+.|-++|+.|+||-++....+.+ +++.+..+. ++ .+...+.-++.-++-+.......+++
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566778888889999999999999998887666555444 556666553 43 33444455666667777788889999
Q ss_pred ccccCcccc--------------------------hhHHHHHHHHHHhhHHHHhhhhcccccc--------cCeEEEeec
Q psy10222 403 AETSEPKYR--------------------------GAFLAVSSLAISSGILVSHLLDHLPTVR--------HLGLVMALV 448 (1693)
Q Consensus 403 ~~~~p~~~r--------------------------g~a~g~~~~~~~~g~~lgp~lg~~l~~~--------~gWr~~f~i 448 (1693)
.|..+++++ ++..|.-.+...+|.++.-.+.-.+... .+-|..+.+
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~ 231 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI 231 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence 999999888 8877776666666666555444332211 122332222
Q ss_pred C-------------CCccccc---ccccCcc--ccccc----cc-chhhHHHHHHHHHHHHHHhhhhhh--hhhhhccc-
Q psy10222 449 G-------------PLPQRSY---LHLGNRL--FSFSY----LT-GYCLFQLLAAAGPIFATLGSGMTS--GFSAVLLP- 502 (1693)
Q Consensus 449 ~-------------~~p~~~~---~~~~~~~--~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~- 502 (1693)
. ..|+.+. .+...+. ...+. .+ ..+.++....+.+. ..+.++... .....+..
T Consensus 232 ~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~-~l~~dg~~ti~~~~~i~a~~ 310 (477)
T PF11700_consen 232 VALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAY-FLYSDGVNTIISFAGIYATE 310 (477)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 2 1111111 0000000 00000 00 11222233222222 222333321 12222222
Q ss_pred ccccCCCC---cccccchhHHHHHHHHHHhhhhhchh--HHHHHHHHHHHHHHHHHHh--------cchHHHHHHHHHHH
Q psy10222 503 QLESANST---IPITPEDGSWIACVLSCILMDLYGRR--FTNLILCVPFVLGWVIMSM--------ATEVWLICVGRFLT 569 (1693)
Q Consensus 503 ~~~~~~~~---~~~~~~~g~~iG~~~~G~lsDr~GRk--~~l~~~~~~~~i~~~~~~~--------~~~~~~l~~~r~l~ 569 (1693)
.++-+... +.+.....+++|++++|++.||+|-| ++++.+.++..+..+...+ ..+.+.+.+.-++.
T Consensus 311 ~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~ 390 (477)
T PF11700_consen 311 VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLI 390 (477)
T ss_pred hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHH
Confidence 12211111 23455567889999999999999988 8888777776555444444 56788899999999
Q ss_pred HhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHHHHHHHhhcccC
Q psy10222 570 GLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL-----HWKTASAVCALFPFISCIFVYSTPE 643 (1693)
Q Consensus 570 G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~-----~wr~~~~~~~~~~~i~~~~~~~lpE 643 (1693)
|+..|..++..-++.+|..|+++.+...+++.+..-....++|.+.+.+ +-|..+....+..++++++.+++++
T Consensus 391 G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 391 GLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred HHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999887766 4788888888888888877777653
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.9e-09 Score=132.84 Aligned_cols=284 Identities=17% Similarity=0.167 Sum_probs=200.9
Q ss_pred HHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHH
Q psy10222 1232 IAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFI 1311 (1693)
Q Consensus 1232 ~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~ 1311 (1693)
..+.+.++..+..++..+.++..+..+.+ .|++++++.+++.+.|-+|..+...+..+.+-|.-|-+.+-.+.++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiEr---RF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~ 173 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIER---RFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMG 173 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhh---hcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHH
Confidence 44555667778888888888888888885 799999999999999999999999999999999989889999999999
Q ss_pred HHHHHHHhh--------------------h---------------------------h----H-HHHHHHHHHHhhhhhc
Q psy10222 1312 MGWVIISLA--------------------T---------------------------E----V-WVILAGRFLTGFALGL 1339 (1693)
Q Consensus 1312 i~~ll~~~a--------------------~---------------------------~----~-~~lli~R~l~Gig~g~ 1339 (1693)
++++++++- + + . ..++++.++.|+|...
T Consensus 174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp 253 (735)
T KOG3626|consen 174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP 253 (735)
T ss_pred HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence 999998762 0 0 1 2678999999999999
Q ss_pred hhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc-----------------------hhHHHHHHhHHHHH
Q psy10222 1340 SSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL-----------------------HWKTTSAVCALFPC 1396 (1693)
Q Consensus 1340 ~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l-----------------------~WR~~f~i~~i~~~ 1396 (1693)
.++...+|+-|...+++-+..+|++.....+|+++|.++|+++ .|..=|++.+.+.+
T Consensus 254 i~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~ 333 (735)
T KOG3626|consen 254 IFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLL 333 (735)
T ss_pred CccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999886 26667777777777
Q ss_pred HHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCch
Q psy10222 1397 ASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFL 1476 (1693)
Q Consensus 1397 v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1476 (1693)
+..+..+++|...+ +.++..++ + +.+..+.+++ .+..+......-++-+...+++++++.+
T Consensus 334 ~~a~p~f~fPk~lp---~~~~~~~~-~---~~~~~k~~~~-----------~~~~~~~~~~~ikdfp~s~~~ll~N~if- 394 (735)
T KOG3626|consen 334 FSAVPLFFFPKELP---KSQKRKRA-R---DLHVLKTESG-----------GAKSDKTFGKKIKDFPKSIKRLLSNPIF- 394 (735)
T ss_pred HHHHHHHhCcccCc---cccccchh-h---hhcccccccc-----------cccCCcchhhhHHHHHHHHHHHhcCchH-
Confidence 77777777765531 11111000 0 0000000000 0000000001113345667778877743
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc-CCC-chhHHHHHHHHH-HHHHHHHHHHHhhhhcCC
Q psy10222 1477 KPLAIILVFFFVQQFSGLNTLIFYTVGISKEV-SPD-VNEYTATIVIDI-VRVVMAFVTCGLLRIFGR 1541 (1693)
Q Consensus 1477 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~s-~~~~~~~~~~~i-~~~ig~~~~g~l~dr~gr 1541 (1693)
....+....+...+.....|+|-++++. |.+ ..+.......++ +..+|.+++|+++.|+.-
T Consensus 395 ----~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl 458 (735)
T KOG3626|consen 395 ----MLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKL 458 (735)
T ss_pred ----HHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecc
Confidence 3334444445556777788899888764 666 333333323333 455677889999998753
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.8e-10 Score=133.87 Aligned_cols=252 Identities=14% Similarity=0.038 Sum_probs=168.0
Q ss_pred HhcchhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccc------------
Q psy10222 372 SSATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVR------------ 439 (1693)
Q Consensus 372 ~~a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~------------ 439 (1693)
+.+.+++.++++-++.|.|.+..-+.+..++++..|+|++++.+++.++..++|..+||.+++.++..
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999987631
Q ss_pred ----cCeEEEeecC--------------CCcccccccccCc--ccccccccchhhHHHHHHHHHHHHHH-hhhhhhhhhh
Q psy10222 440 ----HLGLVMALVG--------------PLPQRSYLHLGNR--LFSFSYLTGYCLFQLLAAAGPIFATL-GSGMTSGFSA 498 (1693)
Q Consensus 440 ----~gWr~~f~i~--------------~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 498 (1693)
.+||+++++. +.|+.+....+.. ....+.....+.++........+... .......|..
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~ 164 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVARVSSGDTTQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLV 164 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccccccccccccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789888732 3333221111000 00000001112223332222222222 3344455665
Q ss_pred hccccc---ccCCC---CcccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhh
Q psy10222 499 VLLPQL---ESANS---TIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLS 572 (1693)
Q Consensus 499 ~~l~~~---~~~~~---~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 572 (1693)
.++.+. +.+.. ........+.++|.++++++.||+|+|+.+.++..+.+++.++....++... ...-++.|++
T Consensus 165 ~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~ 243 (310)
T TIGR01272 165 NFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLF 243 (310)
T ss_pred HHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Confidence 555421 11111 1223344577899999999999999999888887777777655555444332 3456688999
Q ss_pred hhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHH
Q psy10222 573 VGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL----HWKTASAV 626 (1693)
Q Consensus 573 ~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~~~~ 626 (1693)
.+..+|...+...+..|++ .+.+.++. .+..+|..+.|.+.+.+ +.+..+.+
T Consensus 244 ~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v 299 (310)
T TIGR01272 244 NSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFAL 299 (310)
T ss_pred HHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHH
Confidence 9999999999999988753 56666665 45668888888766554 45555543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-10 Score=126.17 Aligned_cols=297 Identities=17% Similarity=0.152 Sum_probs=186.7
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHhhhhccc-cCCchhHHHHHHHHHHHHHHH---HhcchhHHHHHHHHHHhhhcccc
Q psy10222 319 IPITTEDASWIASMAALPMAVACVLGCIAMDS-CGRRFSNLILCIPFVLGWIII---SSATKVWLLCVGRFLTGLSIGFL 394 (1693)
Q Consensus 319 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~-~Grr~vl~~~l~~~~~~s~l~---~~a~s~~~ll~~R~l~Gig~g~~ 394 (1693)
.+++.++..++-+.|.+.-.+.+++.|++.|| +|-|....+-.+...+|-++. +.++++|.++++|++.|+|+-..
T Consensus 74 ~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESl 153 (459)
T KOG4686|consen 74 SNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESL 153 (459)
T ss_pred cccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhh
Confidence 56667777888899999999999999999985 566665444444444555444 46789999999999999998888
Q ss_pred chhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeE------------EEeecC-------------
Q psy10222 395 TPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGL------------VMALVG------------- 449 (1693)
Q Consensus 395 ~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr------------~~f~i~------------- 449 (1693)
-++..+++.-||+.||-+.++|+..+..-+|+..--.+.+++.+..+=- ..|-..
T Consensus 154 AVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg 233 (459)
T KOG4686|consen 154 AVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLG 233 (459)
T ss_pred hhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999888777664444444443322200 000000
Q ss_pred ---CCcccccccccCc----ccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhhccc-ccc---cCCCCcccccchh
Q psy10222 450 ---PLPQRSYLHLGNR----LFSFSYLTGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLP-QLE---SANSTIPITPEDG 518 (1693)
Q Consensus 450 ---~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~~~~~~~~~~~g 518 (1693)
...+.. .+.++. ..+......+...-|....++.+......-..+....+.. .++ .+...+......-
T Consensus 234 ~~D~rAeri-lh~e~g~~Ge~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~I 312 (459)
T KOG4686|consen 234 LSDDRAERI-LHLEEGFLGEEPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGI 312 (459)
T ss_pred hhhhHHHHH-HhhhcCcccCCcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhh
Confidence 000000 000000 0011222233344444444444433332222222222221 121 1122333444445
Q ss_pred HHHHHHHHHHhhhhhchhHHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHH
Q psy10222 519 SWIACVLSCILMDLYGRRFTNLILCVPF-VLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAIL 597 (1693)
Q Consensus 519 ~~iG~~~~G~lsDr~GRk~~l~~~~~~~-~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~ 597 (1693)
+.+-+++.|.++||+||+...+.+..+. ..+-....|+ .+.=.+...+.|+.........+..++-.+|.++-|++.
T Consensus 313 sav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTay 390 (459)
T KOG4686|consen 313 SAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAY 390 (459)
T ss_pred hhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchH
Confidence 5677899999999999997766554443 3333333332 222234556667766655555677888889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy10222 598 AIVSLAISSGIFISHLLGTFL 618 (1693)
Q Consensus 598 ~~~~~~~~lG~~~~~~~~~~~ 618 (1693)
+..+...++|..+.+++++.+
T Consensus 391 gf~qsIqNLgla~i~Iiag~i 411 (459)
T KOG4686|consen 391 GFIQSIQNLGLAFIPIIAGFI 411 (459)
T ss_pred HHHHHHHhhhhhHHhhhhhee
Confidence 999999999999999998877
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.8e-11 Score=152.16 Aligned_cols=377 Identities=14% Similarity=0.118 Sum_probs=3.0
Q ss_pred HHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy10222 1238 LTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVII 1317 (1693)
Q Consensus 1238 ~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~ 1317 (1693)
++..+......+....++..+++ .|++++++.|++.+.|-++..+..++..++++|..|-+.+-.+.++.++|+++.
T Consensus 9 ~~~~~~q~~~~g~~~~~lttiEr---RF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~ 85 (539)
T PF03137_consen 9 CLLGLFQMMVSGYVNSSLTTIER---RFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLF 85 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHH
Confidence 33344457777788888888886 799999999999999999999999999999999877778888999999998887
Q ss_pred Hhh------------h--------------------------------------hHHHHHHHHHHHhhhhhchhhhHhHH
Q psy10222 1318 SLA------------T--------------------------------------EVWVILAGRFLTGFALGLSSPVALVY 1347 (1693)
Q Consensus 1318 ~~a------------~--------------------------------------~~~~lli~R~l~Gig~g~~~~~~~~~ 1347 (1693)
++- . -+..++++.++.|+|....+++..+|
T Consensus 86 ~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tY 165 (539)
T PF03137_consen 86 ALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITY 165 (539)
T ss_dssp ------------------------------------------------------------------SSS-----------
T ss_pred hccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeee
Confidence 641 0 12577899999999999999999999
Q ss_pred hhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----------------------hhHHHHHHhHHHH----HHHHHH
Q psy10222 1348 IAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----------------------HWKTTSAVCALFP----CASFIF 1401 (1693)
Q Consensus 1348 i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----------------------~WR~~f~i~~i~~----~v~lv~ 1401 (1693)
+-|..++++-+..+|++.....+|+++|.++|+.+ .|=-.+|+.-++. ++..+.
T Consensus 166 iDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aip 245 (539)
T PF03137_consen 166 IDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIP 245 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998865 1334455444443 333333
Q ss_pred hccccCC-hHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHH
Q psy10222 1402 AYFTPES-PPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLA 1480 (1693)
Q Consensus 1402 ~~~lpEs-p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1480 (1693)
.+++|+. |... ++.++.+.. +.+..+ ..+.+ .+++...+......+.-.+..+++++++.+.
T Consensus 246 l~~FPk~lp~~~---~~~~~~~~~--~~~~~~-~~~~~-------~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~---- 308 (539)
T PF03137_consen 246 LFFFPKKLPGTS---ERQEEKESS--ERKEED-SDKDS-------FKDPKSKKSFGKSIKDFPKALKRLLTNPVFM---- 308 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHcCCccCCCcc---cccchhhhh--hcchhh-hhhhc-------ccccccccchhhhhhhHHHHHHHHhcChHHH----
Confidence 3335543 2210 000000000 000000 00000 0000000000011122344556666665433
Q ss_pred HHHHHHHHHHhhhhHHHHHhHHHHHhhc-CCC-chhHHH-HHHHHHHHHHHHHHHHHhhhhcCC--hhHHHHHHHHHHHH
Q psy10222 1481 IILVFFFVQQFSGLNTLIFYTVGISKEV-SPD-VNEYTA-TIVIDIVRVVMAFVTCGLLRIFGR--RPLALLSCLGTCLS 1555 (1693)
Q Consensus 1481 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~s-~~~~~~-~~~~~i~~~ig~~~~g~l~dr~gr--r~~l~~~~~~~~i~ 1555 (1693)
...+...........+..+.|-+++.. +.+ .++... ....-.+..+|.+++|++++|++- |..+....+...+.
T Consensus 309 -~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~ 387 (539)
T PF03137_consen 309 -CLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVS 387 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHH
Confidence 333333344445667778889888764 555 333332 233333566788899999999753 33333333222222
Q ss_pred HHHH-------------HHHHHHhh------c--------------------------c-CchHHHHHHHHHHHHHHHhh
Q psy10222 1556 LLGV-------------ASILKFMQ------G--------------------------L-LPSFMPVILLMFYMVFVSIG 1589 (1693)
Q Consensus 1556 ~~~~-------------~~~~~~~~------~--------------------------~-~~~~~~~~~~~l~~~~~~~~ 1589 (1693)
.+.. +++..... . . ........+......+....
T Consensus 388 ~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~ 467 (539)
T PF03137_consen 388 VILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFM 467 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHh
Confidence 2220 00100000 0 0 00111111111122222222
Q ss_pred ccccchhhccccCccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q psy10222 1590 LQQLPWMMIGELFPQATRELGSGISTCFAF-LTLFVVVKTGPLLFLS 1635 (1693)
Q Consensus 1590 ~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~-lg~~i~~~~~~~l~~~ 1635 (1693)
.........-..+|++.|+.|.|+...+.+ +|.+-+|.+++.+.|.
T Consensus 468 ~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 468 SQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp -----------------------------------------------
T ss_pred cccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 222223344578899999999999987755 4668899999988885
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.9e-09 Score=126.85 Aligned_cols=331 Identities=16% Similarity=0.131 Sum_probs=192.6
Q ss_pred HhhhhHHhhhcccc-CCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHH--HHHH-HHHhcchh-HH
Q psy10222 305 SAVLLPQLQSANST-IPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFV--LGWI-IISSATKV-WL 379 (1693)
Q Consensus 305 ~~~~~P~l~~~~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~--~~s~-l~~~a~s~-~~ 379 (1693)
.+..+|.++--.++ .|++.+++|.+.+...+...+.+++.|.++||.|.||-++..+.+.. .+-+ ...+.|-. ..
T Consensus 23 ~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n 102 (412)
T PF01306_consen 23 WGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSN 102 (412)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433332 78999999999999999999999999999999998876655443332 2222 22233321 11
Q ss_pred HHHHHHHHhhhcc----ccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC------
Q psy10222 380 LCVGRFLTGLSIG----FLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG------ 449 (1693)
Q Consensus 380 ll~~R~l~Gig~g----~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~------ 449 (1693)
++++-++.|+..+ +..|+.=+++.++. ++.+.-.|=.=+-.++|.+++..++|.+.+. +=+..|++.
T Consensus 103 ~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi~s~~~~i 179 (412)
T PF01306_consen 103 FWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI-NPNIIFWIASAAAII 179 (412)
T ss_dssp -HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee-CccHHHHHHHHHHHH
Confidence 2233333344444 44444444444443 4455556666667777777778888877552 222334432
Q ss_pred -------CCcccccc-ccc----Cccccc--c---cccchhhHHHHHHHHHHHHHHhhhhhhhhhhhcccccccC---CC
Q psy10222 450 -------PLPQRSYL-HLG----NRLFSF--S---YLTGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQLESA---NS 509 (1693)
Q Consensus 450 -------~~p~~~~~-~~~----~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~ 509 (1693)
..|+.... ... .++.+. + ...+.+++..+..+........+.++..+..++...+.+. +.
T Consensus 180 l~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~ 259 (412)
T PF01306_consen 180 LLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQ 259 (412)
T ss_dssp HHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHH
T ss_pred HHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChh
Confidence 11111111 000 011111 1 1112223333333333333344444433332222111111 11
Q ss_pred Ccccccchh---HHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHh
Q psy10222 510 TIPITPEDG---SWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAE 586 (1693)
Q Consensus 510 ~~~~~~~~g---~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E 586 (1693)
.+....+.+ -.+.-.+.+++.+|+|.|+.++++..++.+=+..++++++.+.+.+.+.+.|+-.+.......=|+.+
T Consensus 260 ~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~ 339 (412)
T PF01306_consen 260 MYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITA 339 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222 22345678899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchhhHHHHHH-HHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHh
Q psy10222 587 STEPRYRGAILAIV-SLAISSGIFISHLLGTFL----HWKTASAVCALFPFISCIFV 638 (1693)
Q Consensus 587 ~~p~~~Rg~~~~~~-~~~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~ 638 (1693)
..|++..++...+. ++...+|..+.+..++.. +++..+.+.+...+...+..
T Consensus 340 ~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~ 396 (412)
T PF01306_consen 340 HFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLIS 396 (412)
T ss_dssp HS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHh
Confidence 99999988887774 778888888888777766 67877777766655554443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.3e-08 Score=116.48 Aligned_cols=314 Identities=16% Similarity=0.140 Sum_probs=191.6
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHhhhhccccC-----CchhH-HHHHHHHHHHHHHHHhc-----c-------h--hH
Q psy10222 319 IPITTEDASWIASMAALPMAVACVLGCIAMDSCG-----RRFSN-LILCIPFVLGWIIISSA-----T-------K--VW 378 (1693)
Q Consensus 319 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~G-----rr~vl-~~~l~~~~~~s~l~~~a-----~-------s--~~ 378 (1693)
+++++.-.+...+.-.+ .+...+.+|+.+|+++ ||..+ ..|.+++..+..+..++ . + .+
T Consensus 10 L~vpA~lv~~lval~~~-~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g 88 (403)
T PF03209_consen 10 LGVPAWLVALLVALHYL-VAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLG 88 (403)
T ss_pred hccHHHHHHHHHHHHHH-HHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHH
Confidence 56655555555544433 3457999999999999 77664 45555555555554432 2 1 22
Q ss_pred H--HHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEe-ec-------
Q psy10222 379 L--LCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMA-LV------- 448 (1693)
Q Consensus 379 ~--ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f-~i------- 448 (1693)
. ..+.-++.|+|.+..-.+..++++|..|+|+|+++.+++-....+|.+++..+.|.+.+.++=.-.. .+
T Consensus 89 ~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~ 168 (403)
T PF03209_consen 89 LALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIA 168 (403)
T ss_pred HHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHH
Confidence 2 2334578999999999999999999999999999999999999999999999988877765421100 00
Q ss_pred ---C------CCcccccccccCcccccccc---------cchhhHHHHHHHHHHHHHHhhhhhhhhhhhccccc-c---c
Q psy10222 449 ---G------PLPQRSYLHLGNRLFSFSYL---------TGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQL-E---S 506 (1693)
Q Consensus 449 ---~------~~p~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~---~ 506 (1693)
+ .++.........++.+.... ...+++..+...........|. ..-|+--+. . .
T Consensus 169 ~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~----iLEPygg~Vfgmsv~ 244 (403)
T PF03209_consen 169 LLLNLIALWGQEPRRSRRAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDV----ILEPYGGEVFGMSVG 244 (403)
T ss_pred HHHHHHHHHhcccCCcccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHH----HcCCchhHHcCCCHH
Confidence 0 11111111100000000000 0011111111111111111111 111111000 0 1
Q ss_pred CCCCcccccchhHHHHHHHHHHhhh-hhchhHHHHHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHhhhhCChhHHHH
Q psy10222 507 ANSTIPITPEDGSWIACVLSCILMD-LYGRRFTNLILCVPFVLGWVIMS---MATEVWLICVGRFLTGLSVGLSSPPSIV 582 (1693)
Q Consensus 507 ~~~~~~~~~~~g~~iG~~~~G~lsD-r~GRk~~l~~~~~~~~i~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 582 (1693)
+...+......|.++|-.+.|++.. |.+.|+.-.+++...+++..+.. ...+.+.+...-++.|++.|.......+
T Consensus 245 eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals 324 (403)
T PF03209_consen 245 ETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALS 324 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 1112333445578888888887777 66777777777777766655443 3457889999999999999999999999
Q ss_pred HHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh--------------hhHHHHHHhHHHHHHHHHH
Q psy10222 583 YIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL--------------HWKTASAVCALFPFISCIF 637 (1693)
Q Consensus 583 ~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~--------------~wr~~~~~~~~~~~i~~~~ 637 (1693)
..++..++++.|...+.....+.+...++..+++.. +|..+|.+.++.-+.++.+
T Consensus 325 ~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 325 LMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred HHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887766666555555444332 4667777776665555444
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=119.68 Aligned_cols=317 Identities=12% Similarity=0.086 Sum_probs=204.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHH-HHHHHHHhcch--h-HHHHHHHHHHhhhccccchhhhhh
Q psy10222 326 ASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFV-LGWIIISSATK--V-WLLCVGRFLTGLSIGFLTPPAIVY 401 (1693)
Q Consensus 326 ~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~-~~s~l~~~a~s--~-~~ll~~R~l~Gig~g~~~~~~~a~ 401 (1693)
.+...+..-+..++..|+.|..+|..|+||....-....+ +.+.+..++++ . +.+++.-.+..++.....+..-++
T Consensus 60 ~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~ 139 (438)
T COG2270 60 WGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSM 139 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhH
Confidence 4555677777788889999999999998888666555555 44555566665 4 444557899999999999999999
Q ss_pred hccccCcccchhHHHHHHHHHHhhHHHHhhh---hcccccccCeEEEee-cC---------------------CCccccc
Q psy10222 402 IAETSEPKYRGAFLAVSSLAISSGILVSHLL---DHLPTVRHLGLVMAL-VG---------------------PLPQRSY 456 (1693)
Q Consensus 402 i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~l---g~~l~~~~gWr~~f~-i~---------------------~~p~~~~ 456 (1693)
+.|..++++-|+..|+--..--+|+.+.-.. +....+.-+|.-.+. .. ..|....
T Consensus 140 L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~ 219 (438)
T COG2270 140 LPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILN 219 (438)
T ss_pred hhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhc
Confidence 9999999888887655333333333322222 122223344443311 10 1111111
Q ss_pred ccccCcc--c-------cccc----cc-chhhHHHHHHHHHHHHHHhhhhhhh--hhhhccc-ccccCCC---Ccccccc
Q psy10222 457 LHLGNRL--F-------SFSY----LT-GYCLFQLLAAAGPIFATLGSGMTSG--FSAVLLP-QLESANS---TIPITPE 516 (1693)
Q Consensus 457 ~~~~~~~--~-------~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~-~~~~~~~---~~~~~~~ 516 (1693)
.+...+. . ..+. .+ .+++.+....+.+- ..+.||.... ....+-. .++-++. .+....+
T Consensus 220 v~~~~~~~~~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~-~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~ 298 (438)
T COG2270 220 VHDAEKISSPPPTALRNGFKELKSTFKEIRGRKNLVLFLIAR-FFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALS 298 (438)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHhcccchHHHHHHH-HHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 0000000 0 0000 00 01122222222222 2233332111 1111111 1211111 1334556
Q ss_pred hhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHH
Q psy10222 517 DGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAI 596 (1693)
Q Consensus 517 ~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~ 596 (1693)
..+++|+++.|++.||+|-|+++..+.++..+..+...+......+.++-.+.|...|+.+..+=+|..+.+|+++-++.
T Consensus 299 vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~f 378 (438)
T COG2270 299 VVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRF 378 (438)
T ss_pred HHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccce
Confidence 67889999999999999999999999999988888777777767777788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHHHHHHHhhcccC
Q psy10222 597 LAIVSLAISSGIFISHLLGTFL-----HWKTASAVCALFPFISCIFVYSTPE 643 (1693)
Q Consensus 597 ~~~~~~~~~lG~~~~~~~~~~~-----~wr~~~~~~~~~~~i~~~~~~~lpE 643 (1693)
.+++++..-....++|...... +-|.-+....+..++.++....+|+
T Consensus 379 Fglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~ 430 (438)
T COG2270 379 FGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKV 430 (438)
T ss_pred eehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecC
Confidence 9999999999999999877665 5677777777777777777777775
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.5e-08 Score=118.62 Aligned_cols=311 Identities=18% Similarity=0.157 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhh--hchhhhHhHHhhhccCCCcc
Q psy10222 1280 SLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFAL--GLSSPVALVYIAETTEPKYR 1357 (1693)
Q Consensus 1280 ~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~~~~~lli~R~l~Gig~--g~~~~~~~~~i~e~~p~~~R 1357 (1693)
.+...+.++..|.++||+|||..+...++...+..+...+.. +|.++ +.|+.. +.....+.++++|....++|
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R 146 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEER 146 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHH
Confidence 566678889999999999999999999999999888887777 44444 555543 34556778899999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHHHHHHHHHhc-cccCChHHHHhcCCHHHHHHHHHHHhCCC
Q psy10222 1358 GVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFPCASFIFAY-FTPESPPWLASKGFTVQAQQAFYWLRGHT 1432 (1693)
Q Consensus 1358 g~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~~v~lv~~~-~lpEsp~~l~~~~~~~~a~~~l~~~~~~~ 1432 (1693)
....++.+..+..+..++|.+++.. |--.+|++.....++..+... ++||+-. .+.+.+ ...+....+.
T Consensus 147 ~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~---~~~~~~---~~~~~~~~~~ 220 (463)
T KOG2816|consen 147 SSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQ---EKERSD---ATLRELTPGS 220 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccC---cccccc---ccccccCCCc
Confidence 9999999999999999999999988 777888888888887766554 5899831 011000 0000000000
Q ss_pred CchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHh-hcCCC
Q psy10222 1433 AESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISK-EVSPD 1511 (1693)
Q Consensus 1433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s 1511 (1693)
... ...........+ ....|..+......+.....-.....-..+.+.+ ..+++
T Consensus 221 ~~~------------------------~~~~~~~~~~~~-~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~ 275 (463)
T KOG2816|consen 221 LDS------------------------SHVADAFQSLTK-VGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWN 275 (463)
T ss_pred ccc------------------------hhhhhhhhhhcc-cCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcC
Confidence 000 000001111111 1112222222222222111100000001111111 22666
Q ss_pred -chhHHHHHHHHHHHHHHHHHHH-HhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh
Q psy10222 1512 -VNEYTATIVIDIVRVVMAFVTC-GLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIG 1589 (1693)
Q Consensus 1512 -~~~~~~~~~~~i~~~ig~~~~g-~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 1589 (1693)
.+.............++.++.. .+...+|-|+....|.....+....+ .+.+ ..|... .......+...
T Consensus 276 ~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~----af~~---~~w~~~--~~~v~~~~~~~ 346 (463)
T KOG2816|consen 276 KKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLF----AFAT---ETWMMF--AAGVVVALAGI 346 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHH----HHhc---cchhhh--HHHHHHHhhcc
Confidence 4444455556666777776665 77788888887777777666666555 2211 122222 22223344445
Q ss_pred ccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10222 1590 LQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLS 1635 (1693)
Q Consensus 1590 ~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~ 1635 (1693)
..+...+..+-..+++.+|.+.++.+.+..+.+.++|.+.+.++..
T Consensus 347 ~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 347 VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 5566667777888889999999999999999999999999887653
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-06 Score=102.95 Aligned_cols=323 Identities=11% Similarity=0.011 Sum_probs=193.4
Q ss_pred CccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhch-----hHHHHHH-HHHHHHHHHHHHHhh-----h-------hH--
Q psy10222 1264 TIPITPEDGTWIASMASLPTFIACILGSFLMEMYG-----RRLTNLV-LCIPFIMGWVIISLA-----T-------EV-- 1323 (1693)
Q Consensus 1264 ~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~G-----Rr~~ll~-~~~l~~i~~ll~~~a-----~-------~~-- 1323 (1693)
|++++....+.+.++..+-. ...+.+|+.||+.+ ||..++. +.++...+..+..++ . +.
T Consensus 9 EL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~ 87 (403)
T PF03209_consen 9 ELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWL 87 (403)
T ss_pred HhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHH
Confidence 67888888888888877764 46899999999999 7765554 555555555544432 2 12
Q ss_pred --HHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc-----hhHHHHHHhHHHHH
Q psy10222 1324 --WVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL-----HWKTTSAVCALFPC 1396 (1693)
Q Consensus 1324 --~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l-----~WR~~f~i~~i~~~ 1396 (1693)
....+.=.+.|+|.+...+...++++|..|+++|+++.++......+|.+++.++.+.+ .=|..-.+.....+
T Consensus 88 g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i 167 (403)
T PF03209_consen 88 GLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALI 167 (403)
T ss_pred HHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHH
Confidence 23456677889999999999999999999999999999999999999999999887766 22332222222222
Q ss_pred --HHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccC
Q psy10222 1397 --ASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTE 1474 (1693)
Q Consensus 1397 --v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1474 (1693)
+.-+...+=.|.+.- +.+ ...+ .++......+++...+++
T Consensus 168 ~~~l~~ia~wg~E~r~~-----~~~---------~~~~------------------------~~~~~f~~a~~~~~~~~~ 209 (403)
T PF03209_consen 168 ALLLNLIALWGQEPRRS-----RRA---------AAAE------------------------RPRPPFREAWRQVWASPQ 209 (403)
T ss_pred HHHHHHHHHHhcccCCc-----ccc---------cCCC------------------------CCCccHHHHHHHHHhCCC
Confidence 222222222232110 000 0000 001112233444555554
Q ss_pred chHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhh-hcCChhHHHHHHHHH
Q psy10222 1475 FLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLR-IFGRRPLALLSCLGT 1552 (1693)
Q Consensus 1475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~d-r~grr~~l~~~~~~~ 1552 (1693)
-++-++........ + ...-...-|+==+-.|++ .++...+...+.+.+++-...+++.. |.++++...+++..+
T Consensus 210 a~~f~~fl~l~t~a--~--~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~ 285 (403)
T PF03209_consen 210 ARRFFVFLFLGTLA--F--FMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLG 285 (403)
T ss_pred hhHHHHHHHHHHHH--H--HhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 44333322222211 0 000011111111222777 67777888888899999988888776 677778888888888
Q ss_pred HHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1553 CLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLL 1632 (1693)
Q Consensus 1553 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l 1632 (1693)
.++...+ ...... .+.+.......++....+ ....-......++.+++..|..+|.-...+.+...++....+.+
T Consensus 286 ~~~f~li-i~a~~~---~~~~~~~~~~~l~G~g~G-~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~ 360 (403)
T PF03209_consen 286 ALAFALI-ILAGPL---GSPWLFRPGVFLLGLGNG-LFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGAL 360 (403)
T ss_pred HHHHHHH-HHHHhc---ccchHHHHHHHHHHHhhh-HHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666 322222 223333222222222211 11122234555777778889999999888888888888888877
Q ss_pred HH
Q psy10222 1633 FL 1634 (1693)
Q Consensus 1633 ~~ 1634 (1693)
.|
T Consensus 361 ~D 362 (403)
T PF03209_consen 361 RD 362 (403)
T ss_pred HH
Confidence 66
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-08 Score=104.66 Aligned_cols=130 Identities=25% Similarity=0.419 Sum_probs=112.4
Q ss_pred ccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchh
Q psy10222 514 TPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYR 593 (1693)
Q Consensus 514 ~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~R 593 (1693)
....+.++++++.|++.||+|||+.+..+.....++.+...+.++.+.+.+.+++.|++.+...+....++.|..|+++|
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 85 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEER 85 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhh
Confidence 44568889999999999999999999999888888888888888999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHhh-cccC
Q psy10222 594 GAILAIVSLAISSGIFISHLLGTFL----HWKTASAVCALFPFISCIFVY-STPE 643 (1693)
Q Consensus 594 g~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~~-~lpE 643 (1693)
++..+..+....+|..+++.+.+.. +|+..+.+..+..++..+... +.||
T Consensus 86 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 86 GVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999998777655 788888888777666655443 4555
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-07 Score=119.02 Aligned_cols=350 Identities=17% Similarity=0.179 Sum_probs=209.7
Q ss_pred hhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhc-----hhHHHHHHHHHHHHHHHHHHHhhh----hH
Q psy10222 1253 VLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMY-----GRRLTNLVLCIPFIMGWVIISLAT----EV 1323 (1693)
Q Consensus 1253 ~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~-----GRr~~ll~~~~l~~i~~ll~~~a~----~~ 1323 (1693)
...|.+++ ++++++++.+...+...+...+ -+++|.++|.+ .||+-++++.++..++.+..+..+ +.
T Consensus 11 ~~~~~l~~---~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~ 86 (433)
T PF03092_consen 11 AIYPFLKD---DLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSA 86 (433)
T ss_pred HHHHHHHH---HcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 34466663 8999999999999999988766 57899999976 477777778777766666666543 46
Q ss_pred HHHHHHHHHHhhhhhchhhhHhHHhhhccC--CCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHHHHH
Q psy10222 1324 WVILAGRFLTGFALGLSSPVALVYIAETTE--PKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFPCA 1397 (1693)
Q Consensus 1324 ~~lli~R~l~Gig~g~~~~~~~~~i~e~~p--~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~~v 1397 (1693)
....++-++..+|....-.++=+++.|... ++.||...+.......+|.+++..+++.+ ++|+.|.+.+++..+
T Consensus 87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l 166 (433)
T PF03092_consen 87 AIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLL 166 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHH
Confidence 677778889999999999999999999984 44488889999999999999999998887 899999998888777
Q ss_pred HHHHhcc-ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCch
Q psy10222 1398 SFIFAYF-TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFL 1476 (1693)
Q Consensus 1398 ~lv~~~~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1476 (1693)
..+..++ .+|.++ .+.++... ..+. +.+.... ..++.....++.++.+..+
T Consensus 167 ~~~~~~~~~~e~~~-----~~~~~~~~----~~~~--~~~~~~~-----------------~~~~~~~~l~~~~~~~~i~ 218 (433)
T PF03092_consen 167 MLIVALFLLEERKV-----RPADEVFS----FGKE--EVPCLFG-----------------SFREQLSELWRALQQRAIW 218 (433)
T ss_pred HHHHHHHhhhhccc-----cccchhhc----cccc--ccchhhH-----------------HHHHHHHHHHHHHhhhHHH
Confidence 7665555 444210 00000000 0000 0000000 0112233445555555444
Q ss_pred HHHHHHHHHHHHHHhhhhHH-HHHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHH
Q psy10222 1477 KPLAIILVFFFVQQFSGLNT-LIFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCL 1554 (1693)
Q Consensus 1477 ~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i 1554 (1693)
+......+++.. ....... ..|+........+++ ...+...++..++.++|..+-.+...+..-|+++....++..+
T Consensus 219 ~~~~~~~~~~~~-~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~ 297 (433)
T PF03092_consen 219 QPILFFIFFFNL-PPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVL 297 (433)
T ss_pred HHHHHHHHHHHh-ccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 444311111111 0000011 111111111111244 3334445666667777777766666666667776665555544
Q ss_pred HHHHHHHHHHHhhc----cCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1555 SLLGVASILKFMQG----LLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGP 1630 (1693)
Q Consensus 1555 ~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~ 1630 (1693)
..+.- ..+....+ -...+.......+..........|. ....+|+.|+...|+..++...+.++|..++..+..
T Consensus 298 ~~l~~-~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~-lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~ 375 (433)
T PF03092_consen 298 ASLFD-LLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPS-LVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGA 375 (433)
T ss_pred Hhccc-EEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHH-HHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33321 00000000 0111222222233333444444444 346789999999999999999999999999999998
Q ss_pred HHHHhcC
Q psy10222 1631 LLFLSIG 1637 (1693)
Q Consensus 1631 ~l~~~~g 1637 (1693)
.+.+..|
T Consensus 376 ~l~~~~~ 382 (433)
T PF03092_consen 376 FLMELFG 382 (433)
T ss_pred HHHHHcC
Confidence 8887665
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.7e-08 Score=118.07 Aligned_cols=298 Identities=14% Similarity=0.105 Sum_probs=199.2
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHhhhhcccc-CCchhHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHhhhccccc
Q psy10222 319 IPITTEDASWIASMAALPMAVACVLGCIAMDSC-GRRFSNLILCIPFVLGWIIISSAT--KVWLLCVGRFLTGLSIGFLT 395 (1693)
Q Consensus 319 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~-Grr~vl~~~l~~~~~~s~l~~~a~--s~~~ll~~R~l~Gig~g~~~ 395 (1693)
+|.+++++.-+.+.|..-.=+..++.||++||+ |+||.+..|.+++.+|-++.+.++ +...++++=++.++|.|..=
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 668888887777777776777999999999986 999999999999999999999985 78899999999999999999
Q ss_pred hhhhhhhccccCccc--chhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC-------------------CCccc
Q psy10222 396 PPAIVYIAETSEPKY--RGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG-------------------PLPQR 454 (1693)
Q Consensus 396 ~~~~a~i~~~~p~~~--rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~-------------------~~p~~ 454 (1693)
|...+++.|.+|+++ |=...++.-++.++|+.++|.+.+++.+.+||+..|-+. ..+..
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~ 215 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGV 215 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCC
Confidence 999999999997754 566777888899999999999999999999999777654 00000
Q ss_pred cc-ccccCcccccc------------------------------------------cccc--hhhHHHHHHHHHHHHHHh
Q psy10222 455 SY-LHLGNRLFSFS------------------------------------------YLTG--YCLFQLLAAAGPIFATLG 489 (1693)
Q Consensus 455 ~~-~~~~~~~~~~~------------------------------------------~~~~--~~~~~~~~~~~~~~~~~~ 489 (1693)
+. .+...+..... +..+ ..+++....+...+....
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~i 295 (498)
T COG3104 216 PDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVI 295 (498)
T ss_pred CCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHH
Confidence 00 00000000000 0000 111222111111111111
Q ss_pred hhhhh----hhhhhcccccccCC--------CCcccccchhHHHHHHHHHHhhhhhchh-------HHHHHHHHHHHHHH
Q psy10222 490 SGMTS----GFSAVLLPQLESAN--------STIPITPEDGSWIACVLSCILMDLYGRR-------FTNLILCVPFVLGW 550 (1693)
Q Consensus 490 ~~~~~----~~~~~~l~~~~~~~--------~~~~~~~~~g~~iG~~~~G~lsDr~GRk-------~~l~~~~~~~~i~~ 550 (1693)
+.... +....+..+..+.+ ..++..+....++-+++.-++--+.+|+ .-+-++..++..+.
T Consensus 296 FW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~f 375 (498)
T COG3104 296 FWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGF 375 (498)
T ss_pred HHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHH
Confidence 11100 11111111111111 1123344445566666666666664443 12344555555554
Q ss_pred HHHHhc----------chHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhh
Q psy10222 551 VIMSMA----------TEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGT 616 (1693)
Q Consensus 551 ~~~~~~----------~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~ 616 (1693)
++.... .+.++++...+++++|-=...|+..+++...+|++..+.++++.-+....|+.++..++.
T Consensus 376 l~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 376 LILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 443332 257889999999999999999999999999999999999999988888888888776655
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.8e-06 Score=101.77 Aligned_cols=321 Identities=14% Similarity=0.144 Sum_probs=192.2
Q ss_pred hhhhhcCCCCccCCcchhH-HHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy10222 1255 LPQLESANSTIPITPEDGT-WIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLT 1333 (1693)
Q Consensus 1255 lp~i~~~~~~~~is~~~~~-~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~~~~~lli~R~l~ 1333 (1693)
.|.+.. .|.|.+.+|.. -+.-...-++....++...+.|..|.|++++++.+...+..++.-+.++...+-+.-++-
T Consensus 27 ~~yL~~--~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~y 104 (412)
T PF01770_consen 27 TPYLTG--PDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFY 104 (412)
T ss_pred hHHHcC--CccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHH
Confidence 344443 24677777753 444455556667778889999999999999999999999999999999999999999999
Q ss_pred hhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc------hhHHHHHHhHHHHHHHHHHhccccC
Q psy10222 1334 GFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL------HWKTTSAVCALFPCASFIFAYFTPE 1407 (1693)
Q Consensus 1334 Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l------~WR~~f~i~~i~~~v~lv~~~~lpE 1407 (1693)
|++.+. ..+-++|+--..|+++=-++.+....+.-+|..++.++|..+ +.+.+.++......+.++..+++|.
T Consensus 105 g~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~ 183 (412)
T PF01770_consen 105 GLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPM 183 (412)
T ss_pred HHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999776 667788888888999888999999999999999998888876 6777777777777777777778876
Q ss_pred ChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHH
Q psy10222 1408 SPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFF 1487 (1693)
Q Consensus 1408 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1487 (1693)
.++-+.-+++.++... .+....++.++..+ .....+++ +..............++.++ ..+..+.+..+.+|+
T Consensus 184 ~~~S~~f~r~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~l~~l~~~~~-~~y~~~~ll~WSlWW 256 (412)
T PF01770_consen 184 PKRSLFFHRKPPAEQD-ANESESDKMNESPE---SSSSTEKS--PSTESSSRKSVLRLLWKDFK-SCYSNPRLLLWSLWW 256 (412)
T ss_pred CCcccceeccCccccc-cccccccccccccc---cccccccC--cccccchHHHHHHHHHHHHH-HHhcCchHHHHHHHH
Confidence 5532211111100000 00000000000000 00000000 00000000111111122221 123445677778888
Q ss_pred HHHhhhhHHHHHhHHHHHhhcCCC----chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHH
Q psy10222 1488 VQQFSGLNTLIFYTVGISKEVSPD----VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASIL 1563 (1693)
Q Consensus 1488 ~~~~~~~~~~~~~~p~~~~~~g~s----~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~ 1563 (1693)
....++++.+..|...+.++...+ .-.|..-....+.+.++++..|++-.++.+..-+..+......+..++
T Consensus 257 a~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~---- 332 (412)
T PF01770_consen 257 AFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLF---- 332 (412)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHH----
Confidence 888889999999998888877211 223344444455556666777877555555443333332222222222
Q ss_pred HHhhccCchHHHHHHHHHHHHHHHhhc
Q psy10222 1564 KFMQGLLPSFMPVILLMFYMVFVSIGL 1590 (1693)
Q Consensus 1564 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ 1590 (1693)
......+.|......+++...+....
T Consensus 333 -lm~~t~~Iwv~Y~~yIif~~~y~fli 358 (412)
T PF01770_consen 333 -LMSFTGNIWVCYAGYIIFRSLYMFLI 358 (412)
T ss_pred -HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 11223445555555555555555433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-06 Score=101.49 Aligned_cols=231 Identities=13% Similarity=0.098 Sum_probs=146.0
Q ss_pred CCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhh
Q psy10222 1263 STIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSP 1342 (1693)
Q Consensus 1263 ~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~ 1342 (1693)
++++.+..|++.+-..-+....+..++.|.++||+|||+.-+.-.++++++++ +-..+|+..|+++|++-|++....++
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS 140 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFS 140 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999998999999999999999999999999999999999986 55679999999999999999988887
Q ss_pred hHhHH-hhhccCCCcchhhhH-HHHHHHHHH----HHHHHHhhhhc------hhHHHHHHhHHHHHHHHHHhcc-ccCCh
Q psy10222 1343 VALVY-IAETTEPKYRGVLSA-LLCTAVAIG----IFTAHLLGTFL------HWKTTSAVCALFPCASFIFAYF-TPESP 1409 (1693)
Q Consensus 1343 ~~~~~-i~e~~p~~~Rg~~~~-l~~~~~~lG----~~lg~~lg~~l------~WR~~f~i~~i~~~v~lv~~~~-lpEsp 1409 (1693)
.-=+. +.|.-..+.+....+ .+..+..++ .+++.+++..+ +=..+|....+..++..++... -+|.+
T Consensus 141 ~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENy 220 (354)
T PF05631_consen 141 AFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENY 220 (354)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccC
Confidence 76554 566643322222222 222111122 23333444443 2366787777776665554433 35542
Q ss_pred HHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHH
Q psy10222 1410 PWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQ 1489 (1693)
Q Consensus 1410 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1489 (1693)
. +. .+..+.. +.....++.+.++ ++.+.......+.
T Consensus 221 g------~~--------------~~~~~~~--------------------~~~~~a~~~i~~d----~ril~LG~~qslF 256 (354)
T PF05631_consen 221 G------DT--------------SSSSSLS--------------------GSFREAWRAILSD----PRILLLGLIQSLF 256 (354)
T ss_pred C------Cc--------------ccccchH--------------------HHHHHHHHHHHcC----chhHHHHHHHHHH
Confidence 1 00 0000000 0011122233333 3445556666666
Q ss_pred HhhhhHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy10222 1490 QFSGLNTLIFYTVGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIF 1539 (1693)
Q Consensus 1490 ~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~i~~~ig~~~~g~l~dr~ 1539 (1693)
...-+..+..|.|.+-. .+-+..-+..+.-..++.++|+.+..++..+-
T Consensus 257 E~smy~FVflWtPaL~~-~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~ 305 (354)
T PF05631_consen 257 EGSMYLFVFLWTPALDP-DDEELPLGLIFSSFMVAMMLGSSLFSRLLSKS 305 (354)
T ss_pred HHHHHHheeeeeceecC-CCCCCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 66656666677887762 22234567777777888888888876655443
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.1e-07 Score=111.82 Aligned_cols=279 Identities=16% Similarity=0.168 Sum_probs=191.0
Q ss_pred HHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhccc--cchhhhhhhccccCcccc
Q psy10222 334 ALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCVGRFLTGLSIGF--LTPPAIVYIAETSEPKYR 411 (1693)
Q Consensus 334 ~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~~R~l~Gig~g~--~~~~~~a~i~~~~p~~~r 411 (1693)
.+.-.+..+..|.++||+|||..+...+....+..+...+.. |++++ +.|+..+. .+....++++|....++|
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R 146 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEER 146 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchhHH
Confidence 445566889999999999999999999999998888887777 55544 66665444 577888999999999999
Q ss_pred hhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC-------------CCcccccccccC---------cccc----
Q psy10222 412 GAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG-------------PLPQRSYLHLGN---------RLFS---- 465 (1693)
Q Consensus 412 g~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~-------------~~p~~~~~~~~~---------~~~~---- 465 (1693)
...+|+++..+..+..++|.+++.+...+|--.+|.+. ..|+....+.+. ....
T Consensus 147 ~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~ 226 (463)
T KOG2816|consen 147 SSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSSHV 226 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccchhh
Confidence 99999999999999999999999998888877777765 222222211111 0000
Q ss_pred ---ccc--ccchhhHHHHHHHHHHHHHHhhhhhhh-hhhhccc-ccccCCC---CcccccchhHHHHHHHHH-Hhhhhhc
Q psy10222 466 ---FSY--LTGYCLFQLLAAAGPIFATLGSGMTSG-FSAVLLP-QLESANS---TIPITPEDGSWIACVLSC-ILMDLYG 534 (1693)
Q Consensus 466 ---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~-~~~~~~~---~~~~~~~~g~~iG~~~~G-~lsDr~G 534 (1693)
.+. ..+..+..+.......+.......... ....++. .+..+.. .+......-..++.++.. .+...+|
T Consensus 227 ~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~ 306 (463)
T KOG2816|consen 227 ADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILG 306 (463)
T ss_pred hhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 011122222222222222222211111 1112221 1111111 122222333345555544 8888899
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHh
Q psy10222 535 RRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLL 614 (1693)
Q Consensus 535 Rk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~ 614 (1693)
-|+.+..+.....+.....+++++.|+......+.++.. ...+..-+.++-..+++.+|.+.++......+...+++.+
T Consensus 307 ~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~-~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~ 385 (463)
T KOG2816|consen 307 EKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAG-IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPAL 385 (463)
T ss_pred hhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhc-chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHH
Confidence 888999999999999999999999999888887776654 5778888999999999999999999999999988888876
Q ss_pred hhhh
Q psy10222 615 GTFL 618 (1693)
Q Consensus 615 ~~~~ 618 (1693)
-+.+
T Consensus 386 ~~~i 389 (463)
T KOG2816|consen 386 YGNI 389 (463)
T ss_pred HHHH
Confidence 5443
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.3e-07 Score=111.35 Aligned_cols=285 Identities=16% Similarity=0.110 Sum_probs=179.2
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcch------hH--HHHHHHHHHhhh
Q psy10222 319 IPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATK------VW--LLCVGRFLTGLS 390 (1693)
Q Consensus 319 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s------~~--~ll~~R~l~Gig 390 (1693)
++ +.+..-|..-.|.+.+....++..|+.|++|-|...+.+..+-++|..+=..+.. ++ ....+..+.+.+
T Consensus 75 Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~A 153 (480)
T KOG2563|consen 75 YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAA 153 (480)
T ss_pred hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHh
Confidence 44 5555667777888999999999999999999999999999999999998766543 34 555788888888
Q ss_pred ccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhccccccc------CeEE--EeecC-------------
Q psy10222 391 IGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRH------LGLV--MALVG------------- 449 (1693)
Q Consensus 391 ~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~------gWr~--~f~i~------------- 449 (1693)
+-........+..-|||++||..|..+-.++..+|.++|.++...+...- .|.- +|+..
T Consensus 154 q~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~ 233 (480)
T KOG2563|consen 154 QPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLF 233 (480)
T ss_pred hhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999998888887775543 4543 23311
Q ss_pred ---CCcccccccccCccccccccc----chhhHHHHHHHHHHHHHHhhhhhhhhhhhcc----ccccc--CCCCcccccc
Q psy10222 450 ---PLPQRSYLHLGNRLFSFSYLT----GYCLFQLLAAAGPIFATLGSGMTSGFSAVLL----PQLES--ANSTIPITPE 516 (1693)
Q Consensus 450 ---~~p~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~--~~~~~~~~~~ 516 (1693)
..|..+.........+..... -.+.+++..... ..+...+....+..... +.... ..+.......
T Consensus 234 ~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~~F~il~~--~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~i 311 (480)
T KOG2563|consen 234 VFTKKPPTPPSASQAALQDASFPKSIKSCFKNRQFIILAI--CYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMI 311 (480)
T ss_pred hcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCccHHHHHH--HHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHH
Confidence 111111000000000000100 112222222222 22222222222222222 11111 1222344555
Q ss_pred hhHHHHHHHHHHhhhhhch-hHHHHHHHHHHHHHH-HHHHhcc---hHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcc
Q psy10222 517 DGSWIACVLSCILMDLYGR-RFTNLILCVPFVLGW-VIMSMAT---EVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPR 591 (1693)
Q Consensus 517 ~g~~iG~~~~G~lsDr~GR-k~~l~~~~~~~~i~~-~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~ 591 (1693)
.++++|+.+.|.+.||... |.+.++......++. .+..+.. ..+.+...-.+.|++.-+..|...-+..|..-|.
T Consensus 312 v~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv 391 (480)
T KOG2563|consen 312 VAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPV 391 (480)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeecccc
Confidence 6888999999999999875 444444444444442 2222221 2334555666778888889998888999988776
Q ss_pred hhhHHHHHHHHHHHH
Q psy10222 592 YRGAILAIVSLAISS 606 (1693)
Q Consensus 592 ~Rg~~~~~~~~~~~l 606 (1693)
.-|.-.++.+...++
T Consensus 392 ~E~tSsGll~~~gq~ 406 (480)
T KOG2563|consen 392 AEGTSSGLLNLSGQI 406 (480)
T ss_pred CCcccceeEEeehhH
Confidence 666667766554443
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=6e-05 Score=92.09 Aligned_cols=311 Identities=13% Similarity=0.132 Sum_probs=188.7
Q ss_pred HHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCC
Q psy10222 1276 ASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPK 1355 (1693)
Q Consensus 1276 ~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~ 1355 (1693)
.++-+....+.+++.+.+.|+.|.|+.+.++...+....+..- -+|-+-+..+-.+.|+|.+..+..-..|++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl-~~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFL-FPNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHH-hcchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 7788888899999999999999999999999999988766654 466777889999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhhhhc------------hhH-HHH-------------HHhHHHHHHHHHHhccccCCh
Q psy10222 1356 YRGVLSALLCTAVAIGIFTAHLLGTFL------------HWK-TTS-------------AVCALFPCASFIFAYFTPESP 1409 (1693)
Q Consensus 1356 ~Rg~~~~l~~~~~~lG~~lg~~lg~~l------------~WR-~~f-------------~i~~i~~~v~lv~~~~lpEsp 1409 (1693)
.+.+..++.-.....+.++|.++-..+ +-| +.+ .+...+..+..+...++|...
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 999999998888888888776543332 121 111 111111111111112222210
Q ss_pred HHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHH
Q psy10222 1410 PWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQ 1489 (1693)
Q Consensus 1410 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1489 (1693)
... +. + .. + + ...+......+++++++. +......+..
T Consensus 215 -~~~------~~------------------~---~~-~-~--------~~~~~l~~~~~l~~~~~m----l~L~~~f~~t 252 (461)
T KOG3098|consen 215 -VVN------CK------------------S---SS-E-T--------SFSELLKLTFKLLKTPKM----LLLFPFFFYT 252 (461)
T ss_pred -hhh------hh------------------h---hc-c-c--------cHHHHHHHHHHHhcCHhH----HHHHHHHHHH
Confidence 000 00 0 00 0 0 001111122333333322 2222211111
Q ss_pred HhhhhHHHHHhHHHHHh--hcCCC--chhHHHHHHHHHHHHHHHHHHHHhhhh---cCChhHHHHHHHHHHHHHHHHHHH
Q psy10222 1490 QFSGLNTLIFYTVGISK--EVSPD--VNEYTATIVIDIVRVVMAFVTCGLLRI---FGRRPLALLSCLGTCLSLLGVASI 1562 (1693)
Q Consensus 1490 ~~~~~~~~~~~~p~~~~--~~g~s--~~~~~~~~~~~i~~~ig~~~~g~l~dr---~grr~~l~~~~~~~~i~~~~~~~~ 1562 (1693)
.+.-......|...+.- ..+.+ .-.....+..+++.+++....+.+.+| +||++...++..+..+..++. ..
T Consensus 253 G~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li-~l 331 (461)
T KOG3098|consen 253 GLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLI-HL 331 (461)
T ss_pred HHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHH-hc
Confidence 11111222222222222 22333 334456677788888888888887755 678888888877777776665 22
Q ss_pred HHHhhcc-----------CchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1563 LKFMQGL-----------LPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPL 1631 (1693)
Q Consensus 1563 ~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~ 1631 (1693)
....+.+ .+......+..+..++......+..+.++.+.+| +.|.++.++.-+-..+.+.+.-+..+.
T Consensus 332 ~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 332 SFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred cccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 1111110 0123445556666677788888888888888884 778999999988888888776555544
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.3e-07 Score=107.68 Aligned_cols=117 Identities=19% Similarity=0.220 Sum_probs=98.6
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHhhhhccccCC-chhHHHHHHHHHHHHHHH-Hh---cc-hhHHHHHHHHHHhhhcc
Q psy10222 319 IPITTEDASWIASMAALPMAVACVLGCIAMDSCGR-RFSNLILCIPFVLGWIII-SS---AT-KVWLLCVGRFLTGLSIG 392 (1693)
Q Consensus 319 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Gr-r~vl~~~l~~~~~~s~l~-~~---a~-s~~~ll~~R~l~Gig~g 392 (1693)
.+.+++-.||+.+...++.++.++++|+...|.++ |+.++.|.++..+|.++. ++ .+ ..+.++++|++.|+|.|
T Consensus 66 ~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~ 145 (488)
T KOG2325|consen 66 PTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG 145 (488)
T ss_pred CCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc
Confidence 45566778999999999999999999999999997 888999999999999988 32 22 56788999999999977
Q ss_pred ccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhccc
Q psy10222 393 FLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLP 436 (1693)
Q Consensus 393 ~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l 436 (1693)
. ...-.+++++..-.++|-||++..+.+..+|.++||.++..+
T Consensus 146 n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f 188 (488)
T KOG2325|consen 146 N-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF 188 (488)
T ss_pred c-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence 7 577889999998889999999999987777777777666443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.37 E-value=1e-05 Score=101.30 Aligned_cols=336 Identities=18% Similarity=0.201 Sum_probs=202.3
Q ss_pred hhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccC-----CchhHHHHHHHHHHHHHHHHhcc----h
Q psy10222 306 AVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCG-----RRFSNLILCIPFVLGWIIISSAT----K 376 (1693)
Q Consensus 306 ~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~G-----rr~vl~~~l~~~~~~s~l~~~a~----s 376 (1693)
....|.+.++ +|+++++.+...+...+.+. .-++.|.++|.+- ||+-++++.++.+++.+..+..+ +
T Consensus 10 ~~~~~~l~~~---l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s 85 (433)
T PF03092_consen 10 LAIYPFLKDD---LGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESS 85 (433)
T ss_pred HHHHHHHHHH---cCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccch
Confidence 3567778888 99999999988888877776 6788999999763 55555666666655556555544 4
Q ss_pred hHHHHHHHHHHhhhccccchhhhhhhcccc--CcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecCC----
Q psy10222 377 VWLLCVGRFLTGLSIGFLTPPAIVYIAETS--EPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVGP---- 450 (1693)
Q Consensus 377 ~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~--p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~~---- 450 (1693)
.....+.=++.-+|.+..-.++=+++.|.. .|++||...+.......+|.+++..++|.+.+..++|..|.+..
T Consensus 86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~ 165 (433)
T PF03092_consen 86 AAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPL 165 (433)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHH
Confidence 566666668888899999999999999988 44458889999999999999999999999999999999998750
Q ss_pred ---------Cccccccc------ccCcccc--cccccc-----hhhHHHHHHHHHHH-HHHhhhhhhhh----hhhcc-c
Q psy10222 451 ---------LPQRSYLH------LGNRLFS--FSYLTG-----YCLFQLLAAAGPIF-ATLGSGMTSGF----SAVLL-P 502 (1693)
Q Consensus 451 ---------~p~~~~~~------~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~l-~ 502 (1693)
.++....+ ...+..+ ....+. .+..+......... ..+........ ..++. +
T Consensus 166 l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~ 245 (433)
T PF03092_consen 166 LMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTD 245 (433)
T ss_pred HHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEec
Confidence 01100000 0000000 000000 00011111111111 11111110000 00010 1
Q ss_pred ccc---cCCC---CcccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhc----------chHHHHHHHH
Q psy10222 503 QLE---SANS---TIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMA----------TEVWLICVGR 566 (1693)
Q Consensus 503 ~~~---~~~~---~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~----------~~~~~l~~~r 566 (1693)
... -+.. .+......+.++|..+..+..-++.-|+++.++.++.++..+..... ++.+-.+.--
T Consensus 246 ~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~ 325 (433)
T PF03092_consen 246 ALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDT 325 (433)
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhH
Confidence 111 0000 11222233555666666665556666777777766665554432211 1111122334
Q ss_pred HHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh------------hhHHHHHHhHHHHHHH
Q psy10222 567 FLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL------------HWKTASAVCALFPFIS 634 (1693)
Q Consensus 567 ~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~------------~wr~~~~~~~~~~~i~ 634 (1693)
++..+..+..+.+...+++|.+|+..-|+..++.....++|..++..++..+ +-....+++.+..++.
T Consensus 326 ~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~ 405 (433)
T PF03092_consen 326 ILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLP 405 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHH
Confidence 4555666666778889999999999999999999888888888877766554 1234455556666666
Q ss_pred HHHhhcccCCh
Q psy10222 635 CIFVYSTPESP 645 (1693)
Q Consensus 635 ~~~~~~lpESp 645 (1693)
+.+..++|+..
T Consensus 406 l~ll~lLp~~~ 416 (433)
T PF03092_consen 406 LPLLFLLPPQK 416 (433)
T ss_pred HHHHHHcCCCc
Confidence 66677777643
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.9e-06 Score=101.69 Aligned_cols=157 Identities=10% Similarity=0.065 Sum_probs=112.2
Q ss_pred hHHHHHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCch
Q psy10222 1494 LNTLIFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPS 1572 (1693)
Q Consensus 1494 ~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 1572 (1693)
...+.+++--.+++.+.. .--+......-.+.++..++.+++++|+|+-+++..++.+..+=.+.+ . ...+.
T Consensus 387 ~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~----S---~L~n~ 459 (618)
T KOG3762|consen 387 VGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYY----S---YLQNP 459 (618)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHH----H---HhcCc
Confidence 334444444445665543 444566666677888899999999999999999888877776665554 1 12233
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH
Q psy10222 1573 FMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCF-AFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAF 1651 (1693)
Q Consensus 1573 ~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~-~~lg~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll 1651 (1693)
|..+ .+=+..+......+....+|++.+.||+.|+++.++.... ..+|-.+|+++.+.+.+..|.+..|.++++.+++
T Consensus 460 W~vL-Pieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~ 538 (618)
T KOG3762|consen 460 WMVL-PIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLV 538 (618)
T ss_pred hhee-eHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHH
Confidence 4444 3444444444445555668999999999999999988765 4567788999999999999999999999998888
Q ss_pred HHHHHhh
Q psy10222 1652 GFVFLYI 1658 (1693)
Q Consensus 1652 ~~v~~~~ 1658 (1693)
..++...
T Consensus 539 ~l~~~~~ 545 (618)
T KOG3762|consen 539 TLALFIS 545 (618)
T ss_pred HHHHHHH
Confidence 7766543
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.1e-06 Score=98.20 Aligned_cols=154 Identities=27% Similarity=0.317 Sum_probs=125.8
Q ss_pred hhhhhhhhhhhhhhhhhhcCCCCccCCc--chhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy10222 1242 LAAGSAGAYSAVLLPQLESANSTIPITP--EDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISL 1319 (1693)
Q Consensus 1242 ~~~~~~~~~~~~~lp~i~~~~~~~~is~--~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~ 1319 (1693)
+....+........+.+.. +++.+. .+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.+.+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 88 (338)
T COG0477 12 LLLGLDLGLLSPALPLLLS---TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLAL 88 (338)
T ss_pred HHHHHhcchHHHHHHHHHH---HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHh
Confidence 3344566666666676664 444444 47899999999999999999999999999999988888877777788888
Q ss_pred hhh--HHHHHHHHHHHhhhhhchhhhHhHHhhhccCC-CcchhhhHHHHH-HHHHHHHHHHHhhhhc------hhHHHHH
Q psy10222 1320 ATE--VWVILAGRFLTGFALGLSSPVALVYIAETTEP-KYRGVLSALLCT-AVAIGIFTAHLLGTFL------HWKTTSA 1389 (1693)
Q Consensus 1320 a~~--~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~-~~Rg~~~~l~~~-~~~lG~~lg~~lg~~l------~WR~~f~ 1389 (1693)
..+ .+.+++.|+++|++.|...+...+++.|+.|+ ++|+...+.... ...+|..+++.+++.+ +||+.|.
T Consensus 89 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (338)
T COG0477 89 APNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFL 168 (338)
T ss_pred CccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 877 99999999999999999999999999999998 789999998888 6888888888777655 6999776
Q ss_pred HhHHHHHHH
Q psy10222 1390 VCALFPCAS 1398 (1693)
Q Consensus 1390 i~~i~~~v~ 1398 (1693)
+........
T Consensus 169 ~~~~~~~~~ 177 (338)
T COG0477 169 LAALLGLLL 177 (338)
T ss_pred HHHHHHHHH
Confidence 666555433
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.7e-05 Score=89.84 Aligned_cols=150 Identities=16% Similarity=0.233 Sum_probs=120.8
Q ss_pred hhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh-------hhHH
Q psy10222 1252 AVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLA-------TEVW 1324 (1693)
Q Consensus 1252 ~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a-------~~~~ 1324 (1693)
+.--|++++ .+|.|.+|.+.+.++-.+|..+| ++.|.+.|++|.|.+++++.+...+|-....++ +++|
T Consensus 22 s~yS~~Lk~---~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~ 97 (250)
T PF06813_consen 22 SAYSPQLKS---RLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVW 97 (250)
T ss_pred hhhhHHHHH---HhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchH
Confidence 344567774 78999999999999999999875 889999999999999999999999998777654 4678
Q ss_pred HHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHHHHHHHH
Q psy10222 1325 VILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFPCASFI 1400 (1693)
Q Consensus 1325 ~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~~v~lv 1400 (1693)
.+.+..++.|.+.+...+.+.....+.+| ++||.+.++.-...+++..+-..+...+ .-+.++.+...+.++.++
T Consensus 98 ~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~ 176 (250)
T PF06813_consen 98 LMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLV 176 (250)
T ss_pred HHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999888887888888889997 5799999999999999988766555544 355566666666666665
Q ss_pred Hhcccc
Q psy10222 1401 FAYFTP 1406 (1693)
Q Consensus 1401 ~~~~lp 1406 (1693)
...+++
T Consensus 177 ~~~~vr 182 (250)
T PF06813_consen 177 AMFFVR 182 (250)
T ss_pred Hhhhee
Confidence 555543
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-05 Score=95.60 Aligned_cols=143 Identities=27% Similarity=0.257 Sum_probs=118.0
Q ss_pred hhHhhhhHHhhhccccCCccc--chhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcch--hH
Q psy10222 303 GFSAVLLPQLQSANSTIPITT--EDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATK--VW 378 (1693)
Q Consensus 303 ~~~~~~~P~l~~~~~~~~~s~--~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s--~~ 378 (1693)
.......|.+..+ .+.+. ...++..+.+.+...+..++.|.+.||+|||+.+..+...+.++.+++++.++ .+
T Consensus 19 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
T COG0477 19 GLLSPALPLLLST---LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA 95 (338)
T ss_pred chHHHHHHHHHHH---cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence 3334455555544 44444 47889999999999999999999999999999999999888888888888887 99
Q ss_pred HHHHHHHHHhhhccccchhhhhhhccccCc-ccchhHHHHHHH-HHHhhHHHHhhhhcccccc--cCeEEEeec
Q psy10222 379 LLCVGRFLTGLSIGFLTPPAIVYIAETSEP-KYRGAFLAVSSL-AISSGILVSHLLDHLPTVR--HLGLVMALV 448 (1693)
Q Consensus 379 ~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~-~~rg~a~g~~~~-~~~~g~~lgp~lg~~l~~~--~gWr~~f~i 448 (1693)
.+++.|+++|++.|...+...+++.|++|+ ++|+...+.... ...+|..++|.+++.+... .+||..|.+
T Consensus 96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (338)
T COG0477 96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLL 169 (338)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 999999999999999999999999999987 789999999999 5888999999888777544 566664443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.2e-05 Score=90.25 Aligned_cols=131 Identities=11% Similarity=0.142 Sum_probs=97.4
Q ss_pred cCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhccccchh
Q psy10222 318 TIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCVGRFLTGLSIGFLTPP 397 (1693)
Q Consensus 318 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~~R~l~Gig~g~~~~~ 397 (1693)
++|.+..|++.+....+....+..++.|.++||+|||+.-+.-.+++++..+ +-..++++.|+++|++-|++....+.+
T Consensus 63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~ 141 (354)
T PF05631_consen 63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSA 141 (354)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999998885 667789999999999999999887665
Q ss_pred hhhhh-ccc----cCcccchhHHHHHH-HHHHhhHHHHhhhhcccccccCe--EEEeecC
Q psy10222 398 AIVYI-AET----SEPKYRGAFLAVSS-LAISSGILVSHLLDHLPTVRHLG--LVMALVG 449 (1693)
Q Consensus 398 ~~a~i-~~~----~p~~~rg~a~g~~~-~~~~~g~~lgp~lg~~l~~~~gW--r~~f~i~ 449 (1693)
-=++. .|+ +|++..+...+... .+.++-.+++..++-++.+..|. .++|...
T Consensus 142 FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a 201 (354)
T PF05631_consen 142 FESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAA 201 (354)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHH
Confidence 54443 332 34333344444333 33344445555666666666655 5667654
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00016 Score=86.95 Aligned_cols=220 Identities=15% Similarity=0.190 Sum_probs=145.7
Q ss_pred hHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHH
Q psy10222 518 GSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAIL 597 (1693)
Q Consensus 518 g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~ 597 (1693)
..+..-+....++|..|.|+++++..+..++...+..+.++...+-+..+..|++... -...++|+--.+|+++--+++
T Consensus 53 Syl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vt 131 (412)
T PF01770_consen 53 SYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVT 131 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHH
Confidence 4455667788999999999999999999999999999999999999999999999875 566778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhh------hhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCCCC
Q psy10222 598 AIVSLAISSGIFISHLLGTFL------HWKTASAVCALFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHSAES 671 (1693)
Q Consensus 598 ~~~~~~~~lG~~~~~~~~~~~------~wr~~~~~~~~~~~i~~~~~~~lpESp~~l~~~gr~~~a~~~l~~l~~~~~~~ 671 (1693)
+.......+|..++.+++..+ +++....+......++++..+++|..+|-+.-+++.++..+ .++...+ .
T Consensus 132 s~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~-~~~~~~~---~ 207 (412)
T PF01770_consen 132 SYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQD-ANESESD---K 207 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccc-ccccccc---c
Confidence 888777777777777666544 67888888887777888888888876654433332221111 0000000 0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhccCcccHHHHHHHHHHHHHHHhhhhhhHHhcHHHHHHhcC
Q psy10222 672 ESELKSMLNHAQKITITKTENMVDKKKKREWKKNILSPEFLKPFVILLVFFFVQQFSGVNTVAFYSVGILKNVS 745 (1693)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~G~~~~~~Y~~~i~~~~~ 745 (1693)
.++.++...+.++ .....+...+..-....+. .+..++.+.++.+.+|-.-..+|.+.+.+|...+.++..
T Consensus 208 ~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~-~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~ 278 (412)
T PF01770_consen 208 MNESPESSSSTEK--SPSTESSSRKSVLRLLWKD-FKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVP 278 (412)
T ss_pred ccccccccccccc--CcccccchHHHHHHHHHHH-HHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence 0000000000000 0000000000000111111 123455666788889998999999999999999999883
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00015 Score=82.30 Aligned_cols=148 Identities=13% Similarity=0.023 Sum_probs=100.8
Q ss_pred HHHHHHHhhhhHHHHHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHH
Q psy10222 1484 VFFFVQQFSGLNTLIFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASI 1562 (1693)
Q Consensus 1484 ~~~~~~~~~~~~~~~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~ 1562 (1693)
..+.....+..|.+..|.|.+.++.+++ .+.........++..+ .+..|.+.|++|.+..+.+|.....++..++ ..
T Consensus 8 ~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~-~l 85 (250)
T PF06813_consen 8 SIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLL-WL 85 (250)
T ss_pred HHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-HH
Confidence 3334444556788999999999999999 5555556666677665 4888999999999999999999999888777 22
Q ss_pred HHHhhccCchHHHHHHHHHHHHHHHhh-ccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10222 1563 LKFMQGLLPSFMPVILLMFYMVFVSIG-LQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLS 1635 (1693)
Q Consensus 1563 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~ 1635 (1693)
.........+.+.+ +...+.+..+.+ ..+.......+.|| +.||++.|+.-....+++.+.+.+...+++.
T Consensus 86 ~~~~~i~~~~~~~~-~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 86 AVSGRIPSLPVWLM-CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HHhCccCccchHHH-HHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 22211111233333 232233322222 23333344457888 5799999999999999999988888777665
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0027 Score=77.86 Aligned_cols=283 Identities=14% Similarity=0.129 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhccccchhhhhhhccccCcc
Q psy10222 330 ASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPK 409 (1693)
Q Consensus 330 ~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~ 409 (1693)
.++....+.+.+...+.+.|..|.|..+.+|...+..-.+..-+ +|-+-+++.-++.|+|+|..|...-.++.+..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 56677788999999999999999999999999999877665544 45778899999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhhHHHHhhhhcccccc--------cCeE-EEe---ecC----------------------CCcccc
Q psy10222 410 YRGAFLAVSSLAISSGILVSHLLDHLPTVR--------HLGL-VMA---LVG----------------------PLPQRS 455 (1693)
Q Consensus 410 ~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~--------~gWr-~~f---~i~----------------------~~p~~~ 455 (1693)
++.+..++.=+....+..+|..+--.+... .+-+ ..+ +.. ..|...
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 999999998777777776664332222110 0000 000 000 111111
Q ss_pred cccccCcccccccccc--------hhhHHHHHHHHHHHHHHhhhhhhhhhhhccccc-c-cCCC-C----cccccchhHH
Q psy10222 456 YLHLGNRLFSFSYLTG--------YCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQL-E-SANS-T----IPITPEDGSW 520 (1693)
Q Consensus 456 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~~~-~----~~~~~~~g~~ 520 (1693)
........ +...... ..++...........++...+.....+.-+... + ..+. . ..+....|..
T Consensus 215 ~~~~~~~~-~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v 293 (461)
T KOG3098|consen 215 VVNCKSSS-ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEV 293 (461)
T ss_pred hhhhhhhc-cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHH
Confidence 00000000 0000000 011111122222222222222111111111111 0 1111 1 1233344666
Q ss_pred HHHHHHHHhhh---hhchhHHHHHHHHHHHHHHHHHHhc------------------chHHHHHHHHHHHHhhhhCChhH
Q psy10222 521 IACVLSCILMD---LYGRRFTNLILCVPFVLGWVIMSMA------------------TEVWLICVGRFLTGLSVGLSSPP 579 (1693)
Q Consensus 521 iG~~~~G~lsD---r~GRk~~l~~~~~~~~i~~~~~~~~------------------~~~~~l~~~r~l~G~~~g~~~~~ 579 (1693)
+|+...+.+++ ++||++.+.++..+..++.++.-.. +++....+.-++.|++-......
T Consensus 294 ~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~ 373 (461)
T KOG3098|consen 294 IGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQ 373 (461)
T ss_pred HHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHH
Confidence 77777777775 5689999888888887776655432 13456677788999999988898
Q ss_pred HHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhh
Q psy10222 580 SIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLG 615 (1693)
Q Consensus 580 ~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~ 615 (1693)
.+.++.... ++.|..+.++.-+...++..++....
T Consensus 374 ~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~ 408 (461)
T KOG3098|consen 374 RYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFS 408 (461)
T ss_pred HHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999988 57788888888777777766654433
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.75 E-value=5.7e-06 Score=105.41 Aligned_cols=212 Identities=14% Similarity=0.146 Sum_probs=3.0
Q ss_pred hHHHHHHHHHHHhhhhcCchhhhhhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHhhchh-------------------
Q psy10222 6 EVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL------------------- 66 (1693)
Q Consensus 6 ~~~~l~vgR~l~G~~~G~~~~~~p~yi~E~aP~~~RG~~~~~~~~~~~~G~~i~~~i~~~~------------------- 66 (1693)
.+..+++|.++.|+|..-.+++...|+.|.++++.-+...++.+....+|-.+||++|...
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p 219 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITP 219 (539)
T ss_dssp ------------SSS-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCC
Confidence 3678999999999999999999999999999999999999999999999999988775211
Q ss_pred -------hhHHHHHhhHHHHHHHHHHHhccccCh-HHHHhcCCHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhhhhhhh
Q psy10222 67 -------HWKTASAVCALFPFISCIFVYSTPESP-SWLASKGYSVEAEQAFHWLRGHSAESESELKSMLNHAQKITITKT 138 (1693)
Q Consensus 67 -------~Wr~~~~~~~i~~~i~~~~~~~lpESP-~wl~~~gr~~eA~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (1693)
.|++-|.+..+..++..+-+++.|..- .. +++.++.+...++-. + ..+++ . +
T Consensus 220 ~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~---~~~~~~~~~~~~~~~--~-~~~~~------~--------~ 279 (539)
T PF03137_consen 220 SDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGT---SERQEEKESSERKEE--D-SDKDS------F--------K 279 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCc---ccccchhhhhhcchh--h-hhhhc------c--------c
Confidence 499888888877777766666655432 11 111111111111000 0 00000 0 0
Q ss_pred hhhhhhhhhhhhHhhhc--CCCchhHHHHHHhhHHHhhcccchhHHHcHHHHHhh-cCCChh--HHHHHHHHHHHHHHHH
Q psy10222 139 ENMVDKKKKREWKKNIL--SPEFLKPFVILLVFFFVQQFSGVNTVAFYSVGILKN-VSPDVN--EYVATMAIDIVRVIMS 213 (1693)
Q Consensus 139 ~~~~~~~~~~~~~~~l~--~~~~~rr~~~~~~~~~~qq~sG~~~i~~Y~~~i~~~-~g~~~~--~~~~~~i~~~~~~~~~ 213 (1693)
+++..+......++... .+=.+.++.+...+...-+...+..+..|.|+++++ .+.+.. +.....+.-....++.
T Consensus 280 ~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~ 359 (539)
T PF03137_consen 280 DPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGI 359 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheeh
Confidence 00000000011111111 111345566666666666777888899999999986 454432 2333333333455888
Q ss_pred HHHHHHHhhcC--ChHHHHHhHHHHH
Q psy10222 214 AVTCGLLRITG--RRPLALLSSLGTA 237 (1693)
Q Consensus 214 ~~~~~~iDr~G--RR~lll~g~~~~~ 237 (1693)
+++++++.|+. .|..+........
T Consensus 360 llGG~ivkk~kl~~~~~~~~~~v~~~ 385 (539)
T PF03137_consen 360 LLGGYIVKKFKLSARGAAKFCIVVSI 385 (539)
T ss_dssp --------------------------
T ss_pred heEEEEEEEecCcHHHHHHHHHHHHH
Confidence 88899998763 3444444444333
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.023 Score=70.08 Aligned_cols=127 Identities=12% Similarity=-0.034 Sum_probs=80.7
Q ss_pred HHhHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccC-chH--
Q psy10222 1498 IFYTVGISKEVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLL-PSF-- 1573 (1693)
Q Consensus 1498 ~~~~p~~~~~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~-- 1573 (1693)
......+....|++ ...+..-....+.++.++++..++.+|+|..+.-.++...-..++... ....+..... +..
T Consensus 278 ~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~-v~~~~~~~~~~~~~s~ 356 (432)
T PF06963_consen 278 GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALC-VVSFWAPGSPFSSISA 356 (432)
T ss_pred cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH-HHHHhcCCCCchhhHH
Confidence 33444555566888 556667777788899999999999999998887777766555555444 2222222222 111
Q ss_pred HHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHH
Q psy10222 1574 MPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVV 1625 (1693)
Q Consensus 1574 ~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~ 1625 (1693)
...+..+...-.+-.+.--...-++.|..|++.|++..|+-+..+++...+-
T Consensus 357 ~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~ 408 (432)
T PF06963_consen 357 YLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLS 408 (432)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence 1111122222233334434455678899999999999999999888777554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00049 Score=81.85 Aligned_cols=131 Identities=16% Similarity=0.197 Sum_probs=97.8
Q ss_pred hhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhh----hchhHHHHHHHHH-HHHHHHHHHHhhhhH-----
Q psy10222 1254 LLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLME----MYGRRLTNLVLCI-PFIMGWVIISLATEV----- 1323 (1693)
Q Consensus 1254 ~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsD----r~GRr~~ll~~~~-l~~i~~ll~~~a~~~----- 1323 (1693)
.-|.++ ..+++....+.+--.-.+...+.+++.|..+| |||||+.++.+.. ...++-.+.+++.++
T Consensus 55 ~tPyl~----~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lg 130 (498)
T KOG0637|consen 55 LTPYLQ----SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLG 130 (498)
T ss_pred ccHHHH----HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhc
Confidence 346666 56777777777766666777788999999999 5898887766544 445555666666554
Q ss_pred ------------HHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchh-hhHHHHHHHHHHHHHHHHhhhhchhHHHH
Q psy10222 1324 ------------WVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGV-LSALLCTAVAIGIFTAHLLGTFLHWKTTS 1388 (1693)
Q Consensus 1324 ------------~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~-~~~l~~~~~~lG~~lg~~lg~~l~WR~~f 1388 (1693)
..++++--+.=++.-.....+-++++|...++++.+ +.+++..+.++|..+|..+|.+.+|+-.|
T Consensus 131 d~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~~~~ 208 (498)
T KOG0637|consen 131 DNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLGLYKIF 208 (498)
T ss_pred CCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccCceEEe
Confidence 244455555556666778889999999998777776 99999999999999999999888666543
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.18 Score=63.08 Aligned_cols=115 Identities=8% Similarity=0.115 Sum_probs=90.1
Q ss_pred CcchhHHHHHHhHHHHHHH-HHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh--h-----------------------
Q psy10222 1268 TPEDGTWIASMASLPTFIA-CILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLA--T----------------------- 1321 (1693)
Q Consensus 1268 s~~~~~~l~s~~~lg~~ig-~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a--~----------------------- 1321 (1693)
+.+...|+-+...+..++. .++.+++++|++|++++......+...-++.++. +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 4467899999888887777 8999999999999999998888887777666654 1
Q ss_pred ------hHHHHHHHHHHHhhhhhchhh-hHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc
Q psy10222 1322 ------EVWVILAGRFLTGFALGLSSP-VALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL 1382 (1693)
Q Consensus 1322 ------~~~~lli~R~l~Gig~g~~~~-~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l 1382 (1693)
+.|...+.-....+-.....+ +-.++..|.+..+|-.|..+++..+.++|.++++.+..++
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~ 188 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF 188 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333444455555555555 6678899999999999999999999999999999776664
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0002 Score=65.72 Aligned_cols=82 Identities=21% Similarity=0.184 Sum_probs=76.9
Q ss_pred hhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcch
Q psy10222 297 SSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATK 376 (1693)
Q Consensus 297 ~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s 376 (1693)
..|+..+..+.++|.+.++ .++|.++.+|+.+..+++|.++.+...++.++..+++++..+++.-.+.++.|++.++
T Consensus 3 amGigRFayTplLP~M~~~---~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 3 AMGIGRFAYTPLLPLMQAD---GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS 79 (85)
T ss_pred chhhHHHHHHhHhHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788899999999999999 9999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHH
Q psy10222 377 VWLLC 381 (1693)
Q Consensus 377 ~~~ll 381 (1693)
++.+.
T Consensus 80 ~~~w~ 84 (85)
T PF06779_consen 80 FWLWS 84 (85)
T ss_pred hHHHh
Confidence 87653
|
Note that many members are hypothetical proteins. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.013 Score=76.62 Aligned_cols=139 Identities=16% Similarity=0.252 Sum_probs=112.8
Q ss_pred CccCCcchhHHHHHHhHHHHHHHHHHHHHhhhh-chhHHHHHHHHHHHHHHHHHHHhhhh--------HHHHHHHHHHHh
Q psy10222 1264 TIPITPEDGTWIASMASLPTFIACILGSFLMEM-YGRRLTNLVLCIPFIMGWVIISLATE--------VWVILAGRFLTG 1334 (1693)
Q Consensus 1264 ~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr-~GRr~~ll~~~~l~~i~~ll~~~a~~--------~~~lli~R~l~G 1334 (1693)
.++.+++....+...+....-+.++++|.++|+ +||+++++.+.++..+|..+.+++.. ....+++=.+..
T Consensus 17 ~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia 96 (654)
T TIGR00926 17 FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIA 96 (654)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHH
Confidence 467788888888888888888999999999996 79999999999999999888877521 234678888999
Q ss_pred hhhhchhhhHhHHhhhccCCCc---chhhhHHHHHHHHHHHHHHHHhhhhc-----------hhHHHHHHhHHHHHHHHH
Q psy10222 1335 FALGLSSPVALVYIAETTEPKY---RGVLSALLCTAVAIGIFTAHLLGTFL-----------HWKTTSAVCALFPCASFI 1400 (1693)
Q Consensus 1335 ig~g~~~~~~~~~i~e~~p~~~---Rg~~~~l~~~~~~lG~~lg~~lg~~l-----------~WR~~f~i~~i~~~v~lv 1400 (1693)
+|.|+.-+...+...|.+++++ |-....++..+.++|.++++.+..++ +|...|.+.++..++.++
T Consensus 97 ~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~l 176 (654)
T TIGR00926 97 LGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALI 176 (654)
T ss_pred hhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHH
Confidence 9999999999999999998654 55666777888899988887765554 488899888887777665
Q ss_pred Hh
Q psy10222 1401 FA 1402 (1693)
Q Consensus 1401 ~~ 1402 (1693)
..
T Consensus 177 vf 178 (654)
T TIGR00926 177 VF 178 (654)
T ss_pred HH
Confidence 44
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0035 Score=68.60 Aligned_cols=102 Identities=23% Similarity=0.242 Sum_probs=66.6
Q ss_pred hhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q psy10222 1256 PQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGF 1335 (1693)
Q Consensus 1256 p~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~~~~~lli~R~l~Gi 1335 (1693)
|.+...+..++....+++.+.-+-+-...+...+.|-++||-|||+.-+.-++.+++++ ++-.++.|-.++++|.+-|+
T Consensus 58 PYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGi 136 (454)
T KOG4332|consen 58 PYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGI 136 (454)
T ss_pred ceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhH
Confidence 33333334555566666554333333334555677889999999997665555555544 34578999999999999999
Q ss_pred hhhchhhhHhH-HhhhccCCCcchhh
Q psy10222 1336 ALGLSSPVALV-YIAETTEPKYRGVL 1360 (1693)
Q Consensus 1336 g~g~~~~~~~~-~i~e~~p~~~Rg~~ 1360 (1693)
..+..+..--+ +++|.- ++|+.-
T Consensus 137 aTsLLFSaFEsWliaEHn--ekr~Fe 160 (454)
T KOG4332|consen 137 ATSLLFSAFESWLIAEHN--EKRGFE 160 (454)
T ss_pred HHHHHHHHHHHHHHHHhh--hccCCh
Confidence 98887776644 466665 345443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00052 Score=63.02 Aligned_cols=80 Identities=18% Similarity=0.219 Sum_probs=72.8
Q ss_pred hhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhhhHH
Q psy10222 1245 GSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVW 1324 (1693)
Q Consensus 1245 ~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~~~~ 1324 (1693)
+.......|.+|.+++ |.+.|.++.+|+.|..++|+.+|.+...++.++..+++.+..+++...+..+.+++.++.+
T Consensus 5 GigRFayTplLP~M~~---~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~ 81 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQA---DGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFW 81 (85)
T ss_pred hhHHHHHHhHhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 4556677899999996 8899999999999999999999999999999999999999999999999999999999887
Q ss_pred HHH
Q psy10222 1325 VIL 1327 (1693)
Q Consensus 1325 ~ll 1327 (1693)
...
T Consensus 82 ~w~ 84 (85)
T PF06779_consen 82 LWS 84 (85)
T ss_pred HHh
Confidence 653
|
Note that many members are hypothetical proteins. |
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.003 Score=72.26 Aligned_cols=340 Identities=15% Similarity=0.164 Sum_probs=199.0
Q ss_pred HHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHH
Q psy10222 1285 IACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALL 1364 (1693)
Q Consensus 1285 ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~ 1364 (1693)
++-++.=-+.|-.--||+++.--+.......+.-+.++.+.+-+.-++-|...+. ...-++|+-+..+|+++-++.+..
T Consensus 57 v~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~~~Yqrvt~y~ 135 (433)
T KOG3810|consen 57 VGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDPEMYKRVTGYC 135 (433)
T ss_pred HHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHH-HHhhhheeeeecCHHHHHHHHHHh
Confidence 3344444578998889999998888888888889999999999999999997654 567788999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhc------hhHHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHH
Q psy10222 1365 CTAVAIGIFTAHLLGTFL------HWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFE 1438 (1693)
Q Consensus 1365 ~~~~~lG~~lg~~lg~~l------~WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~ 1438 (1693)
-.+.-.|...|..++..+ +.+.+=.+...-..+..+..+|+|..+|-+.-+.+.++ .......+.+. +.+
T Consensus 136 RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~--~~v~~~e~~~~--~~~ 211 (433)
T KOG3810|consen 136 RAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDK--ISVGDLEEMNP--QAS 211 (433)
T ss_pred HHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhccccc--ceeccchhcCc--cch
Confidence 999989988888888877 44444455555455555666777765543322221111 00000000000 000
Q ss_pred HHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCC---chhH
Q psy10222 1439 FKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVSPD---VNEY 1515 (1693)
Q Consensus 1439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s---~~~~ 1515 (1693)
..+.. +.....+++.+.. .++++.+.-+.+|+...-+|++.+.+|...+.++...+ ...+
T Consensus 212 ~~~~l----------------~~~~~~l~~~l~~-~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG 274 (433)
T KOG3810|consen 212 YMSYL----------------RGAFVLLWRDLQE-CYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNG 274 (433)
T ss_pred hhHHH----------------HHHHHHHHHHHHH-HhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcC
Confidence 00000 0111122222221 13344556677788888889999999998888876432 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCChhHH--HHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhcccc
Q psy10222 1516 TATIVIDIVRVVMAFVTCGLLRIFGRRPLA--LLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQL 1593 (1693)
Q Consensus 1516 ~~~~~~~i~~~ig~~~~g~l~dr~grr~~l--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 1593 (1693)
..=....+.+.++.+..|++--.+.|..-+ .++.+..+...+ +.....+.|+......++-..+.......
T Consensus 275 ~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf-------~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA 347 (433)
T KOG3810|consen 275 AVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLF-------IMAQTQHIWVCYAGYVLFRVIYQLTITIA 347 (433)
T ss_pred HHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhh-------hhhcccceehhhhhHHHHHhhHhhhhhHH
Confidence 233334455666777888887666665322 233222222222 22344556666666666666665544333
Q ss_pred chhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------cchhHHHHHHHHHHHHHHHh
Q psy10222 1594 PWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIG-----------TPETFGLYGCITAFGFVFLY 1657 (1693)
Q Consensus 1594 ~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~g-----------~~~~f~i~~~~~ll~~v~~~ 1657 (1693)
.... ++....+.=|...|+++++.-+...+...+ +.|..| +..-|.+.+++.++.....+
T Consensus 348 ~~~i-A~nL~~e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~ 418 (433)
T KOG3810|consen 348 TFQI-ARNLSSELFGLVFGINTFVALILQSILTLI---VVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEY 418 (433)
T ss_pred HHHH-HHhhhhhhheeeeehHHHHHHHHHHhheEE---EEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHH
Confidence 3222 233344555667777777655444433322 223222 23356777777776655443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.018 Score=69.64 Aligned_cols=130 Identities=16% Similarity=0.216 Sum_probs=92.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhcc
Q psy10222 1273 TWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETT 1352 (1693)
Q Consensus 1273 ~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~ 1352 (1693)
+.+.-+-.+...+.-+++.++-+|..-+.=...+.++..++.++.++++|.+.=+++=.+.+++.|.-...-..+.+ .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 44444445555566667777788765444446666788889999999999999999999999999988887777644 55
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHHhhhhc-----hhHHHHHHhHHHHHHHHHHhcc-ccC
Q psy10222 1353 EPKYRGVLSALLCTAVAIGIFTAHLLGTFL-----HWKTTSAVCALFPCASFIFAYF-TPE 1407 (1693)
Q Consensus 1353 p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l-----~WR~~f~i~~i~~~v~lv~~~~-lpE 1407 (1693)
++ ..++-|..+.+.|.++|+..-..+ +-|..+.+..+++++.++..++ +|.
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 54 356778888887777777543333 4577888888777766665555 544
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0074 Score=63.34 Aligned_cols=115 Identities=10% Similarity=0.167 Sum_probs=97.6
Q ss_pred ccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhhH
Q psy10222 1265 IPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVA 1344 (1693)
Q Consensus 1265 ~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~~ 1344 (1693)
-++++.......++.....++++++.+.+.+++|.|+.++++.+.+.+-... -+-+|.+.++.+-++.|+|.+..++..
T Consensus 32 ~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aq 110 (156)
T PF05978_consen 32 SSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQ 110 (156)
T ss_pred ccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhh
Confidence 3455555666677888888899999999999999999999999999865444 467888999999999999999999999
Q ss_pred hHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhh
Q psy10222 1345 LVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGT 1380 (1693)
Q Consensus 1345 ~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~ 1380 (1693)
..++.+...+++|++-.+++......+.++|.++..
T Consensus 111 g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 111 GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888877777777765443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0011 Score=80.42 Aligned_cols=141 Identities=14% Similarity=0.136 Sum_probs=124.5
Q ss_pred CccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchhhh
Q psy10222 1264 TIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPV 1343 (1693)
Q Consensus 1264 ~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~~~ 1343 (1693)
|.+-.+...|.....-..|....-++.+++-+|+|+-+++.+++.++.+=-+...+.+|.|+.+-.-++||+..+..+..
T Consensus 400 d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa 479 (618)
T KOG3762|consen 400 DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAA 479 (618)
T ss_pred hcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHH
Confidence 66667777787777888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHhhhccCCCcchhhhHHHHH-HHHHHHHHHHHhhhhc----hhHHHHHHhHHHHHHHHHHhcc
Q psy10222 1344 ALVYIAETTEPKYRGVLSALLCT-AVAIGIFTAHLLGTFL----HWKTTSAVCALFPCASFIFAYF 1404 (1693)
Q Consensus 1344 ~~~~i~e~~p~~~Rg~~~~l~~~-~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~~v~lv~~~~ 1404 (1693)
+.+|+++..||+.|..+.++.+. ..++|--+|.++|+.+ +=|..|++.++..++.+++...
T Consensus 480 ~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 480 IISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999755 4678888888888877 8888998888887777665544
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0058 Score=78.29 Aligned_cols=210 Identities=17% Similarity=0.186 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHhhhhcCchhhhhhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHhhchh--------------------
Q psy10222 7 VWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL-------------------- 66 (1693)
Q Consensus 7 ~~~l~vgR~l~G~~~G~~~~~~p~yi~E~aP~~~RG~~~~~~~~~~~~G~~i~~~i~~~~-------------------- 66 (1693)
+..+++|-++.|+|.--.++....|+.|.+-.+.-....++....-.+|-.+|+.+|...
T Consensus 237 ~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPr 316 (735)
T KOG3626|consen 237 FLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPR 316 (735)
T ss_pred HHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcc
Confidence 347889999999999999999999999999999999999999999999988888875211
Q ss_pred ---hhHHHHHhhHHHHHHHHHHHhccccChHHHHhcCCHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhhhhhhhhhhh-
Q psy10222 67 ---HWKTASAVCALFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHSAESESELKSMLNHAQKITITKTENMV- 142 (1693)
Q Consensus 67 ---~Wr~~~~~~~i~~~i~~~~~~~lpESP~wl~~~gr~~eA~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 142 (1693)
.|++-|.++....++..+-+++.|-... +.+|. +..++.+..+++.+. . .++.....
T Consensus 317 WIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp---~~~~~----~~~~~~~~~k~~~~~--------~----~~~~~~~~~ 377 (735)
T KOG3626|consen 317 WIGAWWLGFLICGALLLFSAVPLFFFPKELP---KSQKR----KRARDLHVLKTESGG--------A----KSDKTFGKK 377 (735)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCcccCc---ccccc----chhhhhccccccccc--------c----cCCcchhhh
Confidence 5999999999999998888888876541 11111 111111111111110 0 00000000
Q ss_pred hhhhhhhhHhhhcCCCchhHHHHHHhhHHHhhcccchhHHHcHHHHHhh-cCCChhHHHHHHHHHHHH----HHHHHHHH
Q psy10222 143 DKKKKREWKKNILSPEFLKPFVILLVFFFVQQFSGVNTVAFYSVGILKN-VSPDVNEYVATMAIDIVR----VIMSAVTC 217 (1693)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~rr~~~~~~~~~~qq~sG~~~i~~Y~~~i~~~-~g~~~~~~~~~~i~~~~~----~~~~~~~~ 217 (1693)
-+.-..+.++++.+| +.+++++...-+...++....|.|+++++ .|.+.. .++...+.+. -++.++++
T Consensus 378 ikdfp~s~~~ll~N~-----if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas--~An~l~G~i~vp~~~~Gi~lGG 450 (735)
T KOG3626|consen 378 IKDFPKSIKRLLSNP-----IFMLVVLASVIESLAITGYITFLPKYLETQFGISAS--LANILTGSIGVPAAAVGIFLGG 450 (735)
T ss_pred HHHHHHHHHHHhcCc-----hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHH--HHHHHhhhhhhhhhhhhhhccc
Confidence 001122344445444 44555555556667888899999999975 675533 2333333443 35566667
Q ss_pred HHHhhc--CChHHHHHhHHHHHHHHHH
Q psy10222 218 GLLRIT--GRRPLALLSSLGTAFSLLG 242 (1693)
Q Consensus 218 ~~iDr~--GRR~lll~g~~~~~i~~~~ 242 (1693)
+++.|+ .-|....+......++++.
T Consensus 451 ~iikkfkl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 451 LIIKKFKLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred eeeeeecccHHHHHHHHHHHHHHHHHH
Confidence 777754 4444555544444444443
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0024 Score=69.86 Aligned_cols=310 Identities=17% Similarity=0.159 Sum_probs=154.0
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhccccchhh
Q psy10222 319 IPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCVGRFLTGLSIGFLTPPA 398 (1693)
Q Consensus 319 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~~R~l~Gig~g~~~~~~ 398 (1693)
++....++|.+.-..+-...+...+.|-++|+.||||.-+.=.+.+.+. -++-.+|++-.|+++|++-|++.+..+.+-
T Consensus 67 YgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLs-CiTKhSpqYkVLmVGR~LGGiaTsLLFSaF 145 (454)
T KOG4332|consen 67 YGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILS-CITKHSPQYKVLMVGRVLGGIATSLLFSAF 145 (454)
T ss_pred cCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHH-HHhhcCCceEEEeehhhhhhHHHHHHHHHH
Confidence 3334444444444444444455667788999999999654444444332 345678999999999999999988876654
Q ss_pred hh-hhccccCcccchhHHHHHHHHHHhh--------HHHHhhhhcccccccCe--EEEeecC--------CCcccccc--
Q psy10222 399 IV-YIAETSEPKYRGAFLAVSSLAISSG--------ILVSHLLDHLPTVRHLG--LVMALVG--------PLPQRSYL-- 457 (1693)
Q Consensus 399 ~a-~i~~~~p~~~rg~a~g~~~~~~~~g--------~~lgp~lg~~l~~~~gW--r~~f~i~--------~~p~~~~~-- 457 (1693)
-+ +++|+- +||+.-.-++...++=+ .+++...|-.+.+.++. -++|-.. ......+.
T Consensus 146 EsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~EN 223 (454)
T KOG4332|consen 146 ESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSEN 223 (454)
T ss_pred HHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhc
Confidence 43 455654 56766555554433322 23334444444444332 2333221 00000000
Q ss_pred ---cccCcccccccccchhhHHH----HHHHHHHHHHHhhhhhhhhhhhcccccccCCC----C-cccccchhHHHHHHH
Q psy10222 458 ---HLGNRLFSFSYLTGYCLFQL----LAAAGPIFATLGSGMTSGFSAVLLPQLESANS----T-IPITPEDGSWIACVL 525 (1693)
Q Consensus 458 ---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~-~~~~~~~g~~iG~~~ 525 (1693)
+..++.. .+..++ ....+ -......+-....+..+.+...|-|.+.-.+. + +..+...+.++|+-+
T Consensus 224 ygdps~~kdl-ltqf~g-aa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~e~iPhGfiFatFMlASmLGSSl 301 (454)
T KOG4332|consen 224 YGDPSENKDL-LTQFKG-AARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 301 (454)
T ss_pred cCChhhhHHH-HHHhhH-hHHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCCCcccCCchhHHHHHHHHHHHhhHH
Confidence 0000000 000000 00000 01111222223333333333334444331221 1 233445567777777
Q ss_pred HHHhhhhhchh--HHHHHHHHHHHHHHHHHH----hcc---hHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHH
Q psy10222 526 SCILMDLYGRR--FTNLILCVPFVLGWVIMS----MAT---EVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAI 596 (1693)
Q Consensus 526 ~G~lsDr~GRk--~~l~~~~~~~~i~~~~~~----~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~ 596 (1693)
..++..|-..| ..+.+..++.+....+-. .++ +...-.++.++.-.++|..+|...-+-....|.+.|...
T Consensus 302 a~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearsti 381 (454)
T KOG4332|consen 302 ASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTI 381 (454)
T ss_pred HHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhh
Confidence 76666655443 223333333332222211 122 233346667777788899999999999999999999766
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-------hhhHHHHHHhHHHHHHHHH
Q psy10222 597 LAIVSLAISSGIFISHLLGTF-------LHWKTASAVCALFPFISCI 636 (1693)
Q Consensus 597 ~~~~~~~~~lG~~~~~~~~~~-------~~wr~~~~~~~~~~~i~~~ 636 (1693)
+..+-.- +-..++-. -+. .+-|.++.++.....+..+
T Consensus 382 mNfFRvP--LnifvClv-Lynlh~~~~p~~tr~mf~icS~~~~~a~i 425 (454)
T KOG4332|consen 382 MNFFRVP--LNIFVCLV-LYNLHVDAFPTTTRNMFGICSAFLFVASI 425 (454)
T ss_pred hhheech--hhHhhhhh-heecccccCccccchhhhhhHHHHHHHHH
Confidence 5443221 11111111 111 1467777777766555544
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.12 Score=60.31 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=79.6
Q ss_pred HHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhh-----hchhHHHHHH-HHH
Q psy10222 1235 GGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLME-----MYGRRLTNLV-LCI 1308 (1693)
Q Consensus 1235 ~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsD-----r~GRr~~ll~-~~~ 1308 (1693)
..+.+...+.|.-.+... ++|.+-+ .-+.|-++++...-+| .. ..--+.|.++.| |+|||+.-++ +..
T Consensus 34 llLl~LYllQGiP~GL~~-~iP~lL~---ak~vSyt~~a~fS~ay-~P-~sLKllWaPiVDs~y~k~~GrrksWvvp~q~ 107 (510)
T KOG3574|consen 34 LLLLFLYLLQGIPLGLIG-AIPLLLQ---AKGVSYTSQAIFSFAY-WP-FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQY 107 (510)
T ss_pred HHHHHHHHHcCCchhHhh-hhHHHhc---CCCcchhhhhhhhhhh-hH-HHHHHHHHhhhHHHHHHhhccccceeeehHH
Confidence 333445677888888888 8898875 3456665555432221 11 123567889999 9999985443 222
Q ss_pred HHHHHHHHHHh-----------hhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHH
Q psy10222 1309 PFIMGWVIISL-----------ATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHL 1377 (1693)
Q Consensus 1309 l~~i~~ll~~~-----------a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~ 1377 (1693)
+.+...+..+. .+|...+...-++.-+.++.=-..+-...-.+..+++-|.+.....++...|..++..
T Consensus 108 llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ 187 (510)
T KOG3574|consen 108 LLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNV 187 (510)
T ss_pred HHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcc
Confidence 22222222221 2344444334444444444444444455566677778887777777777777777654
Q ss_pred h
Q psy10222 1378 L 1378 (1693)
Q Consensus 1378 l 1378 (1693)
+
T Consensus 188 i 188 (510)
T KOG3574|consen 188 V 188 (510)
T ss_pred e
Confidence 3
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.25 Score=63.56 Aligned_cols=148 Identities=16% Similarity=0.266 Sum_probs=112.4
Q ss_pred hhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHHHHHHHHHHhhhhH-------
Q psy10222 1252 AVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMY-GRRLTNLVLCIPFIMGWVIISLATEV------- 1323 (1693)
Q Consensus 1252 ~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~-GRr~~ll~~~~l~~i~~ll~~~a~~~------- 1323 (1693)
...+..+.. +++.+.....-.++.+.-.....++++++++|-| ||-+++.++.++..+|..+..++...
T Consensus 58 ~nlv~ylt~---~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~ 134 (571)
T KOG1237|consen 58 SNLVTYLTL---ELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFM 134 (571)
T ss_pred hHHHHHHHH---HhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Confidence 344444443 6777777777778888888888889999999975 99999999999998886554443211
Q ss_pred ------------------HHHHHHHHHHhhhhhchhhhHhHHhhhccC---CCc-ch--hhhHHHHHHHHHHHHHHHHhh
Q psy10222 1324 ------------------WVILAGRFLTGFALGLSSPVALVYIAETTE---PKY-RG--VLSALLCTAVAIGIFTAHLLG 1379 (1693)
Q Consensus 1324 ------------------~~lli~R~l~Gig~g~~~~~~~~~i~e~~p---~~~-Rg--~~~~l~~~~~~lG~~lg~~lg 1379 (1693)
..+..+.-+..+|.|+.-+...++-+|-++ +++ +. .-..++....++|..++..+-
T Consensus 135 ~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~ 214 (571)
T KOG1237|consen 135 CKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVL 214 (571)
T ss_pred ccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHH
Confidence 366778888889999999999999999998 322 22 456778888899999988776
Q ss_pred hhc----hhHHHHHHhHHHHHHHHHHh
Q psy10222 1380 TFL----HWKTTSAVCALFPCASFIFA 1402 (1693)
Q Consensus 1380 ~~l----~WR~~f~i~~i~~~v~lv~~ 1402 (1693)
.+. +|.+-|.+.....++.++.+
T Consensus 215 vyiq~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 215 VYIQDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred HhhhhcccceeeccHHHHHHHHHHHHH
Confidence 666 89999988887766655444
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0019 Score=77.09 Aligned_cols=127 Identities=17% Similarity=0.113 Sum_probs=91.3
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHhhhhcc----ccCCchhHH-HHHHHHHHHHHHHHhcchhHHHH------------
Q psy10222 319 IPITTEDASWIASMAALPMAVACVLGCIAMD----SCGRRFSNL-ILCIPFVLGWIIISSATKVWLLC------------ 381 (1693)
Q Consensus 319 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----~~Grr~vl~-~~l~~~~~~s~l~~~a~s~~~ll------------ 381 (1693)
.|++..-.+.+--...+...+.||+.|..+| |+||||.++ .+....+++-++.+++.++..++
T Consensus 62 lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~ra 141 (498)
T KOG0637|consen 62 LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRA 141 (498)
T ss_pred cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHH
Confidence 3444443333333445556678999999998 689888755 45556667778888888665443
Q ss_pred -----HHHHHHhhhccccchhhhhhhccccCcccchh-HHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC
Q psy10222 382 -----VGRFLTGLSIGFLTPPAIVYIAETSEPKYRGA-FLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG 449 (1693)
Q Consensus 382 -----~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~-a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~ 449 (1693)
++=-+.=++.-....++-++++|...++++-+ ++++.....++|..+|..+|+ +.+|+-.|-+.
T Consensus 142 i~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~----y~~~~~~~~Ft 211 (498)
T KOG0637|consen 142 IVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS----YLGLYKIFPFT 211 (498)
T ss_pred HHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc----ccCceEEeehH
Confidence 22333344555778889999999997777777 999999999999999999988 55888766654
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.015 Score=70.32 Aligned_cols=126 Identities=21% Similarity=0.271 Sum_probs=90.4
Q ss_pred hhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHH-----HHHHHHHHHHhhhhHHHH
Q psy10222 1252 AVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCI-----PFIMGWVIISLATEVWVI 1326 (1693)
Q Consensus 1252 ~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~-----l~~i~~ll~~~a~~~~~l 1326 (1693)
..+.|.+.... ++.-..++..|....|.+|..++-=-...+ |+ |++.+.+.+ ++.+...+.-+.+|.|.+
T Consensus 264 qGv~~tl~fp~-~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~iv 338 (402)
T PF02487_consen 264 QGVAPTLLFPN-SFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIV 338 (402)
T ss_pred hchHHHhcCCc-cCCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34455554322 334446678899999999877763322221 33 333333332 222223333456899999
Q ss_pred HHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc
Q psy10222 1327 LAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL 1382 (1693)
Q Consensus 1327 li~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l 1382 (1693)
++.-+..|+..|..+.-.+..+.|-.|+++|..+++....+.++|..++.+++-.+
T Consensus 339 f~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 339 FVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888765
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.012 Score=61.69 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhccccchhhhhhhccccCcc
Q psy10222 330 ASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPK 409 (1693)
Q Consensus 330 ~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~ 409 (1693)
.+.....+++++++...+.++.|.|+.+++|.+.+.+-... -+-++.+.++.+-++.|+|++..+.+.-.++.+..+++
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~ 121 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEE 121 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHH
Confidence 45666667888888999999999999999999999855443 46778889999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhhHHHHhhhhc
Q psy10222 410 YRGAFLAVSSLAISSGILVSHLLDH 434 (1693)
Q Consensus 410 ~rg~a~g~~~~~~~~g~~lgp~lg~ 434 (1693)
+|++..|+.-.....+.+.|..+.-
T Consensus 122 ~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 122 TIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888777777765543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.3 Score=60.44 Aligned_cols=100 Identities=15% Similarity=0.024 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHH---hc---c----hHHHHHHHHHHHHhhhhCChhHHHHHHHhc
Q psy10222 518 GSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMS---MA---T----EVWLICVGRFLTGLSVGLSSPPSIVYIAES 587 (1693)
Q Consensus 518 g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~---~~---~----~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~ 587 (1693)
..+.|.++..++.+|+|-.+.=+++......+..+.. +. + +...++.+-.+.=+|.-+......-++.|.
T Consensus 305 ~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~ 384 (432)
T PF06963_consen 305 FGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQEN 384 (432)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhccc
Confidence 4456789999999999987766666554433322222 22 2 344566666677788888888899999999
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy10222 588 TEPRYRGAILAIVSLAISSGIFISHLLGTF 617 (1693)
Q Consensus 588 ~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~ 617 (1693)
+|+++||...+..+...++-.++...+.-.
T Consensus 385 V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii 414 (432)
T PF06963_consen 385 VPESERGAVSGVQNSLQSLFELLSFVLTII 414 (432)
T ss_pred CCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999988888766666555433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.067 Score=66.05 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---h------HHHHHHHHHHHhhhhhchhhhHhHHhhhccCCC---cchhhhHHHHHHH
Q psy10222 1301 LTNLVLCIPFIMGWVIISLAT---E------VWVILAGRFLTGFALGLSSPVALVYIAETTEPK---YRGVLSALLCTAV 1368 (1693)
Q Consensus 1301 ~~ll~~~~l~~i~~ll~~~a~---~------~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~---~Rg~~~~l~~~~~ 1368 (1693)
++++++.+++.+|.++..++. + ...+.++-++.++|.|+.=|....+.+|.++++ +|.....++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567888888899888854442 2 267899999999999999999999999999876 3556677889999
Q ss_pred HHHHHHHHHhhhhc----hhHHHHHHhHHHHHHHHHHhc
Q psy10222 1369 AIGIFTAHLLGTFL----HWKTTSAVCALFPCASFIFAY 1403 (1693)
Q Consensus 1369 ~lG~~lg~~lg~~l----~WR~~f~i~~i~~~v~lv~~~ 1403 (1693)
++|..+++.+..++ +|.+.|.+.++..++.++...
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 99999999988888 899999998887776665443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.012 Score=53.79 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=57.0
Q ss_pred hhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHH
Q psy10222 300 TAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPF 364 (1693)
Q Consensus 300 l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~ 364 (1693)
+..+..+.+.|.++.+.++.|.++.++|.+.+...+...++++++|.++||.||++.++.+..++
T Consensus 11 ~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 11 FYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 34445667888888888889999999999999999999999999999999999999988876655
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.026 Score=51.57 Aligned_cols=58 Identities=22% Similarity=0.320 Sum_probs=47.5
Q ss_pred hhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHH
Q psy10222 1253 VLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPF 1310 (1693)
Q Consensus 1253 ~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~ 1310 (1693)
...|.+.-..++.+.|+.+.+.+.++..+...++++++|.++||+||++..+....++
T Consensus 18 ~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 18 CLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 3344444333478999999999999999999999999999999999999887766553
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.16 Score=66.68 Aligned_cols=150 Identities=9% Similarity=0.020 Sum_probs=95.2
Q ss_pred hcCCC-chhHHHHHHHHHHHHHHHHHHHHhhhh-cCChhHHHHHHHHHHHHHHHHHHHHHHhhccCc-hHHHHHHHHHHH
Q psy10222 1507 EVSPD-VNEYTATIVIDIVRVVMAFVTCGLLRI-FGRRPLALLSCLGTCLSLLGVASILKFMQGLLP-SFMPVILLMFYM 1583 (1693)
Q Consensus 1507 ~~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr-~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~ 1583 (1693)
..+++ ..+...........-+..++++++.|+ +||++.+.++.++..++..++ ........... ........+.+.
T Consensus 17 ~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~ll-ai~a~~~~~~~~~~~~~l~gLaLi 95 (654)
T TIGR00926 17 FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALL-SFGAIPSSGHPLHDLLDLLGLALI 95 (654)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HhccCcccccchHHHHHHHHHHHH
Confidence 35666 334444444444555667788888887 699999988888877777666 22111101111 111122233333
Q ss_pred HHHHhhccccchhhccccCccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHH
Q psy10222 1584 VFVSIGLQQLPWMMIGELFPQA---TRELGSGISTCFAFLTLFVVVKTGPLLFLSI-------GTPETFGLYGCITAFGF 1653 (1693)
Q Consensus 1584 ~~~~~~~~~~~~~~~~e~~p~~---~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~-------g~~~~f~i~~~~~ll~~ 1653 (1693)
.++..+.-+...+...|.++++ .|.....+.....++|+.+++.+.+++.+.. +|...|.+.+++++++.
T Consensus 96 a~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~ 175 (654)
T TIGR00926 96 ALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILAL 175 (654)
T ss_pred HhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHH
Confidence 3444444455667777888653 4677888888999999999999999887543 57778888888877776
Q ss_pred HHHh
Q psy10222 1654 VFLY 1657 (1693)
Q Consensus 1654 v~~~ 1657 (1693)
++..
T Consensus 176 lvf~ 179 (654)
T TIGR00926 176 IVFM 179 (654)
T ss_pred HHHH
Confidence 6554
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=95.55 E-value=2.4 Score=51.33 Aligned_cols=103 Identities=15% Similarity=-0.038 Sum_probs=53.3
Q ss_pred hhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHH----hhhhchhHHHHHHHHHHHHHHHHHHHhh--
Q psy10222 1247 AGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSF----LMEMYGRRLTNLVLCIPFIMGWVIISLA-- 1320 (1693)
Q Consensus 1247 ~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~----lsDr~GRr~~ll~~~~l~~i~~ll~~~a-- 1320 (1693)
..+....+.+...+...+.+. ..-..+.+.+...+..++... +.-|. |+++...-.....+..+.+.++
T Consensus 33 pWN~fiTa~~y~~~~~~~~~~----~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~~~~l~~~~il~i~~l~~~~v 107 (406)
T KOG1479|consen 33 PWNMFITASDYYYYRFPGYHN----SKNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRVGYLLSLIAILFIVTLDLALV 107 (406)
T ss_pred chHhhhccHHHHHhhcCCCch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455566777653333333 333344444444444444444 44442 2222222222222222333332
Q ss_pred -------hhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCC
Q psy10222 1321 -------TEVWVILAGRFLTGFALGLSSPVALVYIAETTEP 1354 (1693)
Q Consensus 1321 -------~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~ 1354 (1693)
..+...++.=.+.|++.|..+...+...++.-++
T Consensus 108 ~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ 148 (406)
T KOG1479|consen 108 KTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLFPSE 148 (406)
T ss_pred ccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcCCHH
Confidence 3567778888889999888888888877766443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=95.45 E-value=1 Score=56.43 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1574 MPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKT 1628 (1693)
Q Consensus 1574 ~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~ 1628 (1693)
+...+..+..+..+.-..+....+..+..+++.|..+..+...+-.+|-.+|+.+
T Consensus 373 ~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 373 AYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444445556666777888888999888888888887777777665
|
|
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.087 Score=60.80 Aligned_cols=248 Identities=15% Similarity=0.124 Sum_probs=139.0
Q ss_pred CchHHHHHHHHHHHhhhhcCchhhhhhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHhhc------hhhhHHHHHhhHH
Q psy10222 4 ATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGT------FLHWKTASAVCAL 77 (1693)
Q Consensus 4 a~~~~~l~vgR~l~G~~~G~~~~~~p~yi~E~aP~~~RG~~~~~~~~~~~~G~~i~~~i~~------~~~Wr~~~~~~~i 77 (1693)
.++++.+-+.-+..|..... -..-+.|+-+..+++.+-+..+-.-...-.|.+.|...++ .++++..=-++..
T Consensus 92 g~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~ 170 (433)
T KOG3810|consen 92 GPSVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLA 170 (433)
T ss_pred cCCchheeeehhhcChHHHH-HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHH
Confidence 44555555666666766633 3446789999999999988888887777777777776653 2366666667776
Q ss_pred HHHHHHHHHhccccChHHHHhcCCHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHhhhcCC
Q psy10222 78 FPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHSAESESELKSMLNHAQKITITKTENMVDKKKKREWKKNILSP 157 (1693)
Q Consensus 78 ~~~i~~~~~~~lpESP~wl~~~gr~~eA~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (1693)
--.+.....+|+|--||-+.-|.+.+ ++....+... +++....+.. +.-...+++.+. .
T Consensus 171 ~~~ia~~~A~fLP~v~rSl~f~~~~~--~~~v~~~e~~--~~~~~~~~~l----------------~~~~~~l~~~l~-~ 229 (433)
T KOG3810|consen 171 EVTIAVLLALFLPRVKRSLYFHRLED--KISVGDLEEM--NPQASYMSYL----------------RGAFVLLWRDLQ-E 229 (433)
T ss_pred HHHHHHHHHhhCCCCchhhhhhcccc--cceeccchhc--CccchhhHHH----------------HHHHHHHHHHHH-H
Confidence 66777777788888887765444433 1111111000 0000000000 001112222121 2
Q ss_pred CchhHHHHHHhhHHHhhcccchhHHHcHHHHHhhcCCChhHHHHHH----HHHHHHHHHHHHHHHHHhhcCCh-HHHH-H
Q psy10222 158 EFLKPFVILLVFFFVQQFSGVNTVAFYSVGILKNVSPDVNEYVATM----AIDIVRVIMSAVTCGLLRITGRR-PLAL-L 231 (1693)
Q Consensus 158 ~~~rr~~~~~~~~~~qq~sG~~~i~~Y~~~i~~~~g~~~~~~~~~~----i~~~~~~~~~~~~~~~iDr~GRR-~lll-~ 231 (1693)
.|+++.++-+.+|..-.-||.+-+.+|-..+-+...++. ....+. +..+.+.++.+...++--++-|+ .+++ .
T Consensus 230 ~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~-~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~ 308 (433)
T KOG3810|consen 230 CYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNP-ANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAV 308 (433)
T ss_pred HhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCc-hhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHH
Confidence 367777888999999999999999999999888875332 222222 22222333333333332233333 3444 4
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhccccccccee
Q psy10222 232 SSLGTAFSLLGLALILKFPQEQLPSFIPVILLMSYIVFVSVGLVPLPWIM 281 (1693)
Q Consensus 232 g~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~gpi~~~~ 281 (1693)
++++.+-+++.++ ..++ -|++-+.-.+|...|.....-....+
T Consensus 309 ~s~~~agllf~m~----~t~~---Iw~~Ya~yvlfr~~y~l~itiA~~~i 351 (433)
T KOG3810|consen 309 GSAVQAGLLFIMA----QTQH---IWVCYAGYVLFRVIYQLTITIATFQI 351 (433)
T ss_pred HHHHhhhhhhhhh----cccc---eehhhhhHHHHHhhHhhhhhHHHHHH
Confidence 4444443333332 2122 46677777777777776554333333
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=94.52 E-value=19 Score=45.68 Aligned_cols=148 Identities=14% Similarity=0.078 Sum_probs=90.7
Q ss_pred HHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHH-HHHHHHHHHhhhhchhHHHHHHHHHH
Q psy10222 1231 LIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPT-FIACILGSFLMEMYGRRLTNLVLCIP 1309 (1693)
Q Consensus 1231 ~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~-~ig~l~~G~lsDr~GRr~~ll~~~~l 1309 (1693)
+.-+..+++..++..++.++.-..=..+.- -...++....+-....+.. .+...+..+++++++|.+++...+..
T Consensus 23 ~~k~~~l~~m~f~i~f~y~~lR~~KD~lvv----t~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~ 98 (491)
T PF03219_consen 23 LKKFLPLALMFFFILFNYTILRDLKDTLVV----TAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIP 98 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeEEE----ecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 333444444455566666554221111110 1225666777777666644 45577899999999999999888877
Q ss_pred HHHHHHHHHhh--hh-----------------------------HHHHHHHHHHHhhhhhchhh-hHhHHhhhccCCCcc
Q psy10222 1310 FIMGWVIISLA--TE-----------------------------VWVILAGRFLTGFALGLSSP-VALVYIAETTEPKYR 1357 (1693)
Q Consensus 1310 ~~i~~ll~~~a--~~-----------------------------~~~lli~R~l~Gig~g~~~~-~~~~~i~e~~p~~~R 1357 (1693)
+...-.+.++. |+ .|...+.-...-+-.....+ .-..+..|.++.+|-
T Consensus 99 F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eA 178 (491)
T PF03219_consen 99 FLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEA 178 (491)
T ss_pred HHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 77666665553 11 11111222222222223233 346778999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhc
Q psy10222 1358 GVLSALLCTAVAIGIFTAHLLGTFL 1382 (1693)
Q Consensus 1358 g~~~~l~~~~~~lG~~lg~~lg~~l 1382 (1693)
.+..+++..+.++|.+++..+..++
T Consensus 179 KRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 179 KRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987665554
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=1.4 Score=56.53 Aligned_cols=127 Identities=13% Similarity=0.162 Sum_probs=77.5
Q ss_pred ccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHH-HHHHHH-HHHHHHHhhhh----H-HHHHHHHHHHhhhh
Q psy10222 1265 IPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLV-LCIPFI-MGWVIISLATE----V-WVILAGRFLTGFAL 1337 (1693)
Q Consensus 1265 ~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~-~~~l~~-i~~ll~~~a~~----~-~~lli~R~l~Gig~ 1337 (1693)
++-+..+.+.+.++|.+|.++|+.+.+++.++.-|+....- .+.+.+ ++..+...+.. + ..+...-++.|+..
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI 124 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577778999999999999999999988754333332111 111111 11111111111 1 22344556778888
Q ss_pred hchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc------hhHHHHHHhH
Q psy10222 1338 GLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL------HWKTTSAVCA 1392 (1693)
Q Consensus 1338 g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l------~WR~~f~i~~ 1392 (1693)
|+..|....+..+... ++-|...|-......+|.++|.++.+++ .++..+.+..
T Consensus 125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~ 184 (521)
T PRK03612 125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGS 184 (521)
T ss_pred HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 8888888777655332 2345667888888889999998887776 3555554443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.99 E-value=21 Score=44.22 Aligned_cols=116 Identities=12% Similarity=0.136 Sum_probs=83.4
Q ss_pred CCcchhHHHHHHhHH-HHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---------hhH-------------
Q psy10222 1267 ITPEDGTWIASMASL-PTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLA---------TEV------------- 1323 (1693)
Q Consensus 1267 is~~~~~~l~s~~~l-g~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~~a---------~~~------------- 1323 (1693)
..++...++-+.+.+ +..+..++.+++.+++-|.+++-..+..+...-+++++. +++
T Consensus 58 ~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~ 137 (509)
T COG3202 58 QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMF 137 (509)
T ss_pred CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcc
Confidence 456677888888888 777889999999999999999999888888887777764 110
Q ss_pred ----------HHHHHHHHHHhhhhhchhh-hHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc
Q psy10222 1324 ----------WVILAGRFLTGFALGLSSP-VALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL 1382 (1693)
Q Consensus 1324 ----------~~lli~R~l~Gig~g~~~~-~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l 1382 (1693)
|...+.-...=+=.....+ .-.....|+...+|-.|..++++...+++..++..+..++
T Consensus 138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~ 207 (509)
T COG3202 138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL 207 (509)
T ss_pred ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111211111111122222 2345567888889999999999999999999988877776
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=93.99 E-value=3.3 Score=52.07 Aligned_cols=104 Identities=11% Similarity=0.005 Sum_probs=71.6
Q ss_pred HHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccC-------------------------chHHHHHHHHHHH
Q psy10222 1529 AFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLL-------------------------PSFMPVILLMFYM 1583 (1693)
Q Consensus 1529 ~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~l~~ 1583 (1693)
.++-+++++|++|+++.............++ +.......+. ..|....+.+..-
T Consensus 61 ~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF-~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~e 139 (472)
T TIGR00769 61 MLIYTKLSNILSKEALFYTVISPFLGFFALF-AFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAE 139 (472)
T ss_pred HHHHHHHHhcCCHHHhHHHHHHHHHHHHHHH-HHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHH
Confidence 6778999999999998776655555555554 2222111111 1333333333333
Q ss_pred HHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1584 VFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLF 1633 (1693)
Q Consensus 1584 ~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~ 1633 (1693)
........-+.|.+.+|++..++..+-.++....+++|..+++.+...+.
T Consensus 140 lw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 140 LWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444478999999999999999999999999999999998887766
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=93.84 E-value=1 Score=50.88 Aligned_cols=51 Identities=18% Similarity=0.239 Sum_probs=36.7
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHh--hh-----hc--hhHHHHHHhHHHHHHHHHHhccc
Q psy10222 1355 KYRGVLSALLCTAVAIGIFTAHLL--GT-----FL--HWKTTSAVCALFPCASFIFAYFT 1405 (1693)
Q Consensus 1355 ~~Rg~~~~l~~~~~~lG~~lg~~l--g~-----~l--~WR~~f~i~~i~~~v~lv~~~~l 1405 (1693)
++|+.....-..+.++|.++.-+. -. .. +|++++.+.+.+..+.+++..++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577777777778888888776432 11 11 89999999998888777666554
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=93.72 E-value=6.2 Score=48.83 Aligned_cols=41 Identities=7% Similarity=-0.259 Sum_probs=30.3
Q ss_pred chhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1594 PWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFL 1634 (1693)
Q Consensus 1594 ~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~ 1634 (1693)
..+.-+.+..|..-|+-+.+-+.+.++|+---..+.-++.|
T Consensus 426 i~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD 466 (544)
T PF13000_consen 426 IMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD 466 (544)
T ss_pred HHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence 44555677778899999999999999998665555544544
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=90.72 E-value=8.9 Score=48.55 Aligned_cols=109 Identities=11% Similarity=0.054 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHh--hccCc-----------------------hHHHHHHH
Q psy10222 1525 RVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFM--QGLLP-----------------------SFMPVILL 1579 (1693)
Q Consensus 1525 ~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~--~~~~~-----------------------~~~~~~~~ 1579 (1693)
.++...+-.+++++++|+++..+...........+ +...+. ...++ .|...++.
T Consensus 72 a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f-~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 72 AILFTILYSKLSNRLSREKLFYIIIIPFLGFFALF-AFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-HHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 34445567889999999998766555544444444 222111 11111 23333333
Q ss_pred HHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1580 MFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFL 1634 (1693)
Q Consensus 1580 ~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~ 1634 (1693)
+..-..++....-..|.+++|+++.++..+-.++.....++|..++..+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555679999999999999999999999999999999888877766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=89.62 E-value=2.4 Score=52.31 Aligned_cols=104 Identities=19% Similarity=0.290 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHhc--c-h------HHHHHHHHHHHHhhhhCChhHHHHHHHhccCcc---hhhHHHHHHHHHH
Q psy10222 537 FTNLILCVPFVLGWVIMSMA--T-E------VWLICVGRFLTGLSVGLSSPPSIVYIAESTEPR---YRGAILAIVSLAI 604 (1693)
Q Consensus 537 ~~l~~~~~~~~i~~~~~~~~--~-~------~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~---~Rg~~~~~~~~~~ 604 (1693)
++++++.+++.+|.++...+ + . ...++++..+.++|.|+.=++..++..|..+++ +|......+....
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56788888899998874432 2 2 257899999999999999999999999998765 4556666778888
Q ss_pred HHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHhhc
Q psy10222 605 SSGIFISHLLGTFL----HWKTASAVCALFPFISCIFVYS 640 (1693)
Q Consensus 605 ~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~~~ 640 (1693)
++|..++.....++ +|...|.+..+..+++++..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 99999998776665 6999999988877777665443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=88.99 E-value=12 Score=46.83 Aligned_cols=107 Identities=17% Similarity=0.205 Sum_probs=75.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhhchhH--HHHH--HHHHHHHHHHHHHHhh---------hhHHHHHHHHHHHhhhhhc
Q psy10222 1273 TWIASMASLPTFIACILGSFLMEMYGRR--LTNL--VLCIPFIMGWVIISLA---------TEVWVILAGRFLTGFALGL 1339 (1693)
Q Consensus 1273 ~~l~s~~~lg~~ig~l~~G~lsDr~GRr--~~ll--~~~~l~~i~~ll~~~a---------~~~~~lli~R~l~Gig~g~ 1339 (1693)
-....+|.+|-.+|-.+..+.. .-++| .+++ +.-+++.-.-++|..- +|-+..++.-++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 3455667777777766443321 11223 3333 2334444444555432 4667778889999999999
Q ss_pred hhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhh
Q psy10222 1340 SSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGT 1380 (1693)
Q Consensus 1340 ~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~ 1380 (1693)
..+.++.+..+..++++|..+..+...+..+|..+|..++.
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988876654
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=81.66 E-value=11 Score=45.96 Aligned_cols=126 Identities=13% Similarity=0.139 Sum_probs=85.6
Q ss_pred hhhhhhhcCCCCccCC-cchhHHHHHH-hHHHHHHHHHHHHHhhhhchhHHHHHHHHH-HHHHHHHH-H------Hhhhh
Q psy10222 1253 VLLPQLESANSTIPIT-PEDGTWIASM-ASLPTFIACILGSFLMEMYGRRLTNLVLCI-PFIMGWVI-I------SLATE 1322 (1693)
Q Consensus 1253 ~~lp~i~~~~~~~~is-~~~~~~l~s~-~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~-l~~i~~ll-~------~~a~~ 1322 (1693)
.+.|.+..+.++-+.. +...-.+..+ |.+.-.+|.+...++-+.= ||...+.+++ ...+..+. | .+-.+
T Consensus 264 siFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~ 342 (406)
T KOG1479|consen 264 SIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFES 342 (406)
T ss_pred EecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecC
Confidence 3557776544333333 3334455666 8899999977777766654 4443333222 22222222 2 22356
Q ss_pred HHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhh
Q psy10222 1323 VWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLG 1379 (1693)
Q Consensus 1323 ~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg 1379 (1693)
-+.++..-.+.|+..|=..+..+.+.-+-.|++++-.+..+...+...|...|.+++
T Consensus 343 ~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 343 DGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred chHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 678889999999999999999999999999999999999888888888888776554
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=81.28 E-value=42 Score=43.22 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhHHHHHHHHHHHHHHH
Q psy10222 1608 ELGSGISTCFAFLTLFVVVKTGPLLFL-SIGTPETFGLYGCITAFGFVFL 1656 (1693)
Q Consensus 1608 ~~a~g~~~~~~~lg~~i~~~~~~~l~~-~~g~~~~f~i~~~~~ll~~v~~ 1656 (1693)
+...|-..+...+|+++|+++.+.++- ..|...+..+.+.+.++.+++.
T Consensus 144 g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 144 GHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred hhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 566788888899999999999887665 6787666666666665555433
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=81.05 E-value=0.45 Score=56.91 Aligned_cols=110 Identities=18% Similarity=0.104 Sum_probs=2.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc-CChhHHHHHHHHHHHHHHHHHHHHHHh------hccCchHHHHHHHHHHHHHHHhh
Q psy10222 1517 ATIVIDIVRVVMAFVTCGLLRIF-GRRPLALLSCLGTCLSLLGVASILKFM------QGLLPSFMPVILLMFYMVFVSIG 1589 (1693)
Q Consensus 1517 ~~~~~~i~~~ig~~~~g~l~dr~-grr~~l~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~ 1589 (1693)
..+..+++.++|..+..+..-+. .+|.+.. ..+.=.+...++ ...... ....++.+...+..+..++.+.-
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~-~s~~R~~fiPlf-~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy 264 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWI-LSLLRFLFIPLF-LLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHH-HHHHHHHHHHHH-HHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence 45567888888888777642111 2333332 211111111111 111011 00111223333344444444445
Q ss_pred ccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHH
Q psy10222 1590 LQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKT 1628 (1693)
Q Consensus 1590 ~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~ 1628 (1693)
..+....+..+..+++.|..+..+....-.+|-.+|+.+
T Consensus 265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp --HHHH---------------------------------
T ss_pred hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777888888888888777777766666666543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1693 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 1e-18 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1693 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 3e-08
Identities = 92/623 (14%), Positives = 197/623 (31%), Gaps = 192/623 (30%)
Query: 671 SESELKSMLNHAQKIT---------ITKTENMVDK------KKKREWKKNILSPEFLKPF 715
S+ E+ ++ ++ ++K E MV K + ++ + + E +P
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP- 105
Query: 716 VILLVFFFVQQFSGVNTVAFYSVGILKNVSPDVNEYVATMAIDIVRVIISHMTA--SALC 773
S + + L N + +Y ++ R + AL
Sbjct: 106 ------------SMMTRMYIEQRDRLYNDNQVFAKY------NVSR--LQPYLKLRQALL 145
Query: 774 ALFPLTSIIFVYFTPES-PSWLAS---KGYTVQAEKAF--HWLR-GHSDEFDNELKSILD 826
L P + + S +W+A Y VQ + F WL + + + L+ +
Sbjct: 146 ELRP-AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-- 202
Query: 827 YANSAEKAFHWLRGHSDEFDNELKSIMDYAQNITITNSEDMNYKEKICEWKKN-----IL 881
+K + + D S D++ NI + ++ + K +L
Sbjct: 203 -----QKLLY-------QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 882 ----SPEFLKPFVI---LLVFFFVQQFSGASTQFSGASTVSFYSVAILQNVSADVNEYTA 934
+ + F + +L+ +T+F F S A ++S D + T
Sbjct: 251 LNVQNAKAWNAFNLSCKILL----------TTRF--KQVTDFLSAATTTHISLDHHSMTL 298
Query: 935 TMAIDILRVIMSAVTCGLLRITGRRPIAILSSLGTAFSLLGLALM----------LKYPQ 984
T ++ +++ + C + P +L++ S++ +
Sbjct: 299 TPD-EVKSLLLKYLDCRPQDL----PREVLTTNPRRLSIIA-ESIRDGLATWDNWKHVNC 352
Query: 985 EELPSFIPVILLMSYIVFVSFGLQPLPWIMAGEHTELFFLHPSVIVKIFQ--VKYLGPLT 1042
++L + I+ S V L+P E+ ++F + +F
Sbjct: 353 DKLTT----IIESSLNV-----LEP------AEYRKMFDR-----LSVFPPSAH------ 386
Query: 1043 IMSTVTCGL-LRITGRRPIAILSTL-----------GTAFSLLGLALMLKYPQEELPSFI 1090
I + + + + + +++ L + S+ + L LK E + +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA-L 445
Query: 1091 PVILLMSYIVFVSF---GVQPLPWIMAGEVRYFTTY-YIIHNHLFP-QVTREIGSGITTC 1145
++ Y + +F + P YF Y +I H HL + +
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQ-----YF--YSHIGH-HLKNIEHPERMTL----- 492
Query: 1146 FGFLALFCAVKTEPLLFRSIGTPGTFGLYGKSKTAIRQN-PRWNGRDCLPEVVHSLSRNV 1204
F +F L FR + + K IR + WN + + L
Sbjct: 493 --FRMVF-------LDFRFL----------EQK--IRHDSTAWNASGSILNTLQQL---- 527
Query: 1205 NVGTCVKRYYESKYCEQQSSYVR 1227
++Y+ C+ Y R
Sbjct: 528 -------KFYKPYICDNDPKYER 543
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 2e-05
Identities = 42/304 (13%), Positives = 78/304 (25%), Gaps = 81/304 (26%)
Query: 94 SWLAS---KGYSVEAEQAF--HWLR-GHSAESESELKSMLN---HAQKITITKTENMVDK 144
+W+A Y V+ + F WL + E+ L+ + +++++ +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 145 KKKREWKKNILSPEFL--KPFVILLVFFFVQQFSGVNTVAFYSVGILKNV-SPDVNEY-- 199
K + + L L KP+ L+ +L NV +
Sbjct: 224 KLRIHSIQAELR-RLLKSKPYENCLL-------------------VLLNVQNAKAWNAFN 263
Query: 200 ------VATMAIDIVRVIMSAVTCGLLRITGRRPLALLSSLGTAFSLLGLALILKFPQEQ 253
+ T + + +A T + L L L +
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL------LLKYLDCRPQD 317
Query: 254 LPSFIPVILLMSYIVFVSVGLVPLPWIMTGELLAAMGPIMGDFSS-------GTAVGFS- 305
LP +L + P + E + D T + S
Sbjct: 318 LP---REVLTTN----------PRRLSIIAESIRDG-LATWDNWKHVNCDKLTTIIESSL 363
Query: 306 AVLLPQLQSA----------NSTIPITTEDASWIASMAALPMAVACVL---GCIAMDSCG 352
VL P ++ IP W + + M V L +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 353 RRFS 356
S
Sbjct: 424 STIS 427
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1693 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.97 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.96 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.93 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.92 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.91 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.91 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.89 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.88 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.87 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.86 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.81 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.8 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=433.07 Aligned_cols=440 Identities=21% Similarity=0.349 Sum_probs=354.1
Q ss_pred chhhhHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCC-----CccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchh
Q psy10222 1225 YVRCDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANS-----TIPITPEDGTWIASMASLPTFIACILGSFLMEMYGR 1299 (1693)
Q Consensus 1225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~-----~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GR 1299 (1693)
++++..+.+.++++++.++.+||.++++.++|.+++... +.+.++.+.+++.+++.+|..+|++++|+++||+||
T Consensus 5 ~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GR 84 (491)
T 4gc0_A 5 YNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGR 84 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCH
T ss_pred cChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344556777778889999999999999999999875221 112334567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH------------------hhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhh
Q psy10222 1300 RLTNLVLCIPFIMGWVIIS------------------LATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLS 1361 (1693)
Q Consensus 1300 r~~ll~~~~l~~i~~ll~~------------------~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~ 1361 (1693)
|++++++.+++.+++++++ +++|+++++++|+++|+|.|+..+.++++++|++|+++|++..
T Consensus 85 k~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~ 164 (491)
T 4gc0_A 85 RDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV 164 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhH
Confidence 9999999999999999999 5889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhc------------hhHHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHh
Q psy10222 1362 ALLCTAVAIGIFTAHLLGTFL------------HWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLR 1429 (1693)
Q Consensus 1362 ~l~~~~~~lG~~lg~~lg~~l------------~WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~ 1429 (1693)
++.+.+..+|.++++.++... .||+++.+..++.++.++..+++||||||+..+++.|++++.+++.+
T Consensus 165 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~ 244 (491)
T 4gc0_A 165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIM 244 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhc
Confidence 999999999999998887654 69999999999999988888899999999999999999999988765
Q ss_pred CCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcC
Q psy10222 1430 GHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVS 1509 (1693)
Q Consensus 1430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g 1509 (1693)
+++...++.. +..... ...++...... .. .+++.........++++.+.+.+.+|.|.+.+..+
T Consensus 245 ~~~~~~~~~~-~~~~~~-----------~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (491)
T 4gc0_A 245 GNTLATQAVQ-EIKHSL-----------DHGRKTGGRLL-MF---GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLG 308 (491)
T ss_dssp HHHHHHHHHH-HHHHHH-----------HHHHHHTTHHH-HS---CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSS
T ss_pred CCchhHHHHH-HHHHHH-----------HhhhhhhhHHH-Hh---cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcC
Confidence 4322211111 100000 00111111111 11 23455666677777888889999999999999888
Q ss_pred CC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHh
Q psy10222 1510 PD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSI 1588 (1693)
Q Consensus 1510 ~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1588 (1693)
.+ .+........++..+++.++++++.||+|||+.++.+...++++++.+ +.... ...+.+......+++...+..
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l-~~~~~--~~~~~~~~~~~~~~~~~~~~~ 385 (491)
T 4gc0_A 309 ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSL-GTAFY--TQAPGIVALLSMLFYVAAFAM 385 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHH-HHHHH--TTCCHHHHHHHHHHHHHHHHT
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHH-HHHHh--cccchHHHHHHHHHHHHHHHh
Confidence 77 666677788889999999999999999999999999988888877766 33222 334445556666667777888
Q ss_pred hccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCcchhHHHHHHHHHHHHHHHhhhccC
Q psy10222 1589 GLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFL------SIGTPETFGLYGCITAFGFVFLYIFLPE 1662 (1693)
Q Consensus 1589 ~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~------~~g~~~~f~i~~~~~ll~~v~~~~~~~e 1662 (1693)
+..++.+.+.+|++|++.|+++.|++++++++++++++.+.+.+.+ ..+...+|++++++++++.++.++++||
T Consensus 386 ~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 386 SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 8889999999999999999999999999999999999999887643 3466778999999999999999999999
Q ss_pred CCCCCHHHHHHHhhccCccCC
Q psy10222 1663 TKNKTLQQIEDDFKSKTMEVG 1683 (1693)
Q Consensus 1663 t~~~~~~~~~~~~~~~~~~~~ 1683 (1693)
||+|++||+++.+++++++++
T Consensus 466 Tkg~tLeei~~~f~~~~~~~~ 486 (491)
T 4gc0_A 466 TKGKTLEELEALWEPETKKTQ 486 (491)
T ss_dssp CTTCCHHHHGGGTC-------
T ss_pred CCCCCHHHHHHHhCCCCcccc
Confidence 999999999999987765443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=369.61 Aligned_cols=415 Identities=20% Similarity=0.324 Sum_probs=319.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhcccccccC-----CC----------CcccccchhHHHHHHHHHHhhhhhchhHH
Q psy10222 474 LFQLLAAAGPIFATLGSGMTSGFSAVLLPQLESA-----NS----------TIPITPEDGSWIACVLSCILMDLYGRRFT 538 (1693)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~----------~~~~~~~~g~~iG~~~~G~lsDr~GRk~~ 538 (1693)
++.+...+.+.++.+.+|++.+..+..+|.+... +. .+......|.++|++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 4455555666677777788777766665543211 00 12234456889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh------------------cchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHH
Q psy10222 539 NLILCVPFVLGWVIMSM------------------ATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIV 600 (1693)
Q Consensus 539 l~~~~~~~~i~~~~~~~------------------~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~ 600 (1693)
++++.++..++++++++ ++|+++++++|++.|+|.|+..+..++|++|..|+++||...+..
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 99999999999999884 779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhh------------hhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCC
Q psy10222 601 SLAISSGIFISHLLGTFL------------HWKTASAVCALFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHS 668 (1693)
Q Consensus 601 ~~~~~lG~~~~~~~~~~~------------~wr~~~~~~~~~~~i~~~~~~~lpESp~~l~~~gr~~~a~~~l~~l~~~~ 668 (1693)
+.+..+|.++++.++... .||.++.+..+++++.++..+++|||||||..|+|.||+++.+++.++++
T Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~ 247 (491)
T 4gc0_A 168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT 247 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence 999999999988776543 59999999999999999999999999999999999999999999876532
Q ss_pred CCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhccCcccHHHHHHHHHHHHHHHhhhhhhHHhcHHHHHHhcCCCc
Q psy10222 669 AESESELKSMLNHAQKITITKTENMVDKKKKREWKKNILSPEFLKPFVILLVFFFVQQFSGVNTVAFYSVGILKNVSPDV 748 (1693)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~G~~~~~~Y~~~i~~~~~~~~ 748 (1693)
...++ ..+..++ .++.++...+... ..+++..+.....+++|++|.+.+.+|.+.+++..+.+.
T Consensus 248 ~~~~~----~~~~~~~---------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (491)
T 4gc0_A 248 LATQA----VQEIKHS---------LDHGRKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAST 311 (491)
T ss_dssp HHHHH----HHHHHHH---------HHHHHHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCH
T ss_pred hhHHH----HHHHHHH---------HHhhhhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCc
Confidence 11111 0000000 0000111111111 224567778888889999999999999999977665432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhheeccCCCccccccchhHHHHHhhhhhhccCcccchhHHHHHhhh
Q psy10222 749 NEYVATMAIDIVRVIISHMTASALCALFPLTSIIFVYFTPESPSWLASKGYTVQAEKAFHWLRGHSDEFDNELKSILDYA 828 (1693)
Q Consensus 749 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1693)
+
T Consensus 312 ~------------------------------------------------------------------------------- 312 (491)
T 4gc0_A 312 D------------------------------------------------------------------------------- 312 (491)
T ss_dssp H-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred hhhHHHhhhhhccCcccchhhhhccccchhccccccccchhhHhHHHHhhcccCcCCccchhHHHHHHHHHhhccccccc
Q psy10222 829 NSAEKAFHWLRGHSDEFDNELKSIMDYAQNITITNSEDMNYKEKICEWKKNILSPEFLKPFVILLVFFFVQQFSGASTQF 908 (1693)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 908 (1693)
T Consensus 313 -------------------------------------------------------------------------------- 312 (491)
T 4gc0_A 313 -------------------------------------------------------------------------------- 312 (491)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceeeeeeehhhhccccccchhHHHHHHHHHHHHHHHHhhhHhhhccCcceeeecchhhhhhhhhhhhhccCCCccCC
Q psy10222 909 SGASTVSFYSVAILQNVSADVNEYTATMAIDILRVIMSAVTCGLLRITGRRPIAILSSLGTAFSLLGLALMLKYPQEELP 988 (1693)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 988 (1693)
+....+++.+++.+++++++++++||+|||+.++.+..+++++++.++.....
T Consensus 313 ---------------------~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~------ 365 (491)
T 4gc0_A 313 ---------------------IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT------ 365 (491)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred ---------------------chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc------
Confidence 11223455677788899999999999999999999998888888777654321
Q ss_pred cchhHHHHHHHHHHHhcCCcccccccccccceeeeccccceeeeeeeeecCccceeeccccccccccCCcchhhhhhhhh
Q psy10222 989 SFIPVILLMSYIVFVSFGLQPLPWIMAGEHTELFFLHPSVIVKIFQVKYLGPLTIMSTVTCGLLRITGRRPIAILSTLGT 1068 (1693)
Q Consensus 989 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1693)
T Consensus 366 -------------------------------------------------------------------------------- 365 (491)
T 4gc0_A 366 -------------------------------------------------------------------------------- 365 (491)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHhCcccccceecccccccceeheecccCCCcchhcccccchhhhhh
Q psy10222 1069 AFSLLGLALMLKYPQEELPSFIPVILLMSYIVFVSFGVQPLPWIMAGEVRYFTTYYIIHNHLFPQVTREIGSGITTCFGF 1148 (1693)
Q Consensus 1069 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~ 1148 (1693)
+...+..+++++.+..+++.++++++|++.+| +|||++|++|+|++++++|
T Consensus 366 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E-------------~fPt~~R~~~~g~~~~~~~ 416 (491)
T 4gc0_A 366 ----------------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSE-------------IFPNAIRGKALAIAVAAQW 416 (491)
T ss_dssp ----------------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHH-------------SSCTTTHHHHHHHHHHHHH
T ss_pred ----------------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------------hCCHhHHHHHHHHHHHHHH
Confidence 11245566677778888899999999999999 9999999999999999999
Q ss_pred hhhhhhhhcccceeee------cCCCccccccccchhhhhhCCCCCCCCCccchhcccccc
Q psy10222 1149 LALFCAVKTEPLLFRS------IGTPGTFGLYGKSKTAIRQNPRWNGRDCLPEVVHSLSRN 1203 (1693)
Q Consensus 1149 ~~~~~~~~~~~~~~~~------~~~~~~~~~~a~~~~~s~~~~~~~~~~~lpe~~~~~~~~ 1203 (1693)
+++++....+|.+.+. .+...+|++|++....+... .....||+++++.++
T Consensus 417 ~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~----~~~~~PETkg~tLee 473 (491)
T 4gc0_A 417 LANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALF----MWKFVPETKGKTLEE 473 (491)
T ss_dssp HHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HHHHCCCCTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH----HHheecCCCCCCHHH
Confidence 9999999999987653 57778899999888877766 445567776665443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=320.70 Aligned_cols=395 Identities=13% Similarity=0.043 Sum_probs=297.5
Q ss_pred hhhHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHH
Q psy10222 1227 RCDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVL 1306 (1693)
Q Consensus 1227 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~ 1306 (1693)
+++++..+....++.+..+++.....+.+|.+.+ ++ .++.+.+++.+++.++..++++++|+++||+|||++++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 98 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE---QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS---ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHH
Confidence 3455667777788888999999999999999985 78 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh----hhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc
Q psy10222 1307 CIPFIMGWVIISL----ATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL 1382 (1693)
Q Consensus 1307 ~~l~~i~~ll~~~----a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l 1382 (1693)
.++..++.+++++ ++|++.++++|+++|++.|...+...+++.|++|+++|+++.++.+.+..+|.+++|.+++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ----h-hHHHHHHhHHHHHHHHHHh-ccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccch
Q psy10222 1383 ----H-WKTTSAVCALFPCASFIFA-YFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSEN 1456 (1693)
Q Consensus 1383 ----~-WR~~f~i~~i~~~v~lv~~-~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1456 (1693)
+ ||+.|++.+++.++..+.. +++||+|+....+.+.+ ...+.+++. +. ++ .
T Consensus 179 ~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~----~~--~~------~ 235 (451)
T 1pw4_A 179 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE-----------YKNDYPDDY----NE--KA------E 235 (451)
T ss_dssp HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT-----------TCCC----------------------
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhh-----------hcccccccc----hh--hh------h
Confidence 7 9999999998887765544 55899886421111100 000000000 00 00 0
Q ss_pred hhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHH
Q psy10222 1457 MTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVMAFVTCG 1534 (1693)
Q Consensus 1457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g~ 1534 (1693)
++...++...++.++++.. + ...+..+........+..+.|.++++ .|.+ .+.+.......++.+++.++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (451)
T 1pw4_A 236 QELTAKQIFMQYVLPNKLL----W-YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 310 (451)
T ss_dssp ---CCTHHHHHHTSSCHHH----H-HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHcCHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000111112334443322 2 22222223333456677888888887 5888 66778888889999999999999
Q ss_pred hhhhc--CChhHHHHHHHHHH-HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHH
Q psy10222 1535 LLRIF--GRRPLALLSCLGTC-LSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGS 1611 (1693)
Q Consensus 1535 l~dr~--grr~~l~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~ 1611 (1693)
+.||+ +||+.+..+..+.. ++.+.+ ......+.+ .........+.+.....+....+..|.+|++.|+++.
T Consensus 311 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~ 384 (451)
T 1pw4_A 311 MSDKVFRGNRGATGVFFMTLVTIATIVY-----WMNPAGNPT-VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAA 384 (451)
T ss_dssp HHHHTSTTCHHHHHHHHHHHHHHHHHHT-----TSCCTTCHH-HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHH-----HHhcccCHH-HHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHH
Confidence 99999 99998877766655 333333 111112223 3333333344444455566678899999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhh
Q psy10222 1612 GISTCFAFL-TLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIF 1659 (1693)
Q Consensus 1612 g~~~~~~~l-g~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~ 1659 (1693)
|+.+...++ ++.+++.+.+.+.+..|++..+++.+++.+++.++.+..
T Consensus 385 ~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 385 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999988888877766544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=301.23 Aligned_cols=365 Identities=13% Similarity=0.042 Sum_probs=281.4
Q ss_pred HHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHH
Q psy10222 1230 KLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIP 1309 (1693)
Q Consensus 1230 ~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l 1309 (1693)
++..+..+++..+..+++....++.+|.+.+ +++.++.+.+++.+++.++..++++++|+++||+|||++++.+.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 3445555666678888898999999999986 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---HhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhch---
Q psy10222 1310 FIMGWVII---SLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFLH--- 1383 (1693)
Q Consensus 1310 ~~i~~ll~---~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l~--- 1383 (1693)
..++.+++ ++++|++.++++|+++|++.|...+...+++.|++|+++|++++++.+.+..+|.+++|++++.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999 889999999999999999999999999999999999999999999999999999999999988772
Q ss_pred ---------------------------hHHHHHHhHHHHHHHHHHhcc--ccCChHHHHhcCCHHHHHHHHHHHhCCCCc
Q psy10222 1384 ---------------------------WKTTSAVCALFPCASFIFAYF--TPESPPWLASKGFTVQAQQAFYWLRGHTAE 1434 (1693)
Q Consensus 1384 ---------------------------WR~~f~i~~i~~~v~lv~~~~--lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~ 1434 (1693)
||+.|++.+.+.++..+..++ .||+++. +. +++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~---------------~~~ 242 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NH---------------SDA 242 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CC---------------CCS
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cc---------------ccc
Confidence 999998887776665544433 5666421 00 000
Q ss_pred hHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHH-Hhhc-CCC-
Q psy10222 1435 SEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGI-SKEV-SPD- 1511 (1693)
Q Consensus 1435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~-g~s- 1511 (1693)
++.+.+..+++.++++..+...+.. +...........+.|.+ .++. |.+
T Consensus 243 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~ 294 (438)
T 3o7q_A 243 -----------------------KQGSFSASLSRLARIRHWRWAVLAQ-----FCYVGAQTACWSYLIRYAVEEIPGMTA 294 (438)
T ss_dssp -----------------------STTSHHHHHHHHTTCSHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHSTTCCH
T ss_pred -----------------------cccchhhhHHHHHhChHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhccCCcch
Confidence 0011223445566655433322222 12222345566777777 7766 888
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhcc
Q psy10222 1512 VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQ 1591 (1693)
Q Consensus 1512 ~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 1591 (1693)
.+.+.......++.+++.++.+++.||++||+.+..+....+++.+.+ .. .+........ ...+++.....
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~-~~~g~~~~~~~ 365 (438)
T 3o7q_A 295 GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLIS----AF----AGGHVGLIAL-TLCSAFMSIQY 365 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH----HH----CCHHHHHHHH-HHHHHHHTTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH----HH----cCCcHHHHHH-HHHHHHHHHHH
Confidence 777788888899999999999999999999999988887777666554 11 1122222222 33334444556
Q ss_pred ccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHH
Q psy10222 1592 QLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIG-TPETFGLYGCITAFGFV 1654 (1693)
Q Consensus 1592 ~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~g-~~~~f~i~~~~~ll~~v 1654 (1693)
+..+.+..|.+|++ ++.+.++.. .+.+++.++|.+.+.+.+..| ++..+.+.+++.++..+
T Consensus 366 ~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 366 PTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 77788888999977 888888877 678999999999999999999 88888876655554443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-24 Score=271.75 Aligned_cols=394 Identities=10% Similarity=0.045 Sum_probs=251.9
Q ss_pred CCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhh-chhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchh
Q psy10222 1263 STIPITPEDGTWIASMASLPTFIACILGSFLMEM-YGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSS 1341 (1693)
Q Consensus 1263 ~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr-~GRr~~ll~~~~l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~ 1341 (1693)
+|+|.++.+.+++.+++.++..++++++|+++|| +|||+++..+.++..++.+++++++|++.++++|+++|+|.|...
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 3599999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred hhHhHHhhhccCCCc--chhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHHHHHHHHHhccc-cCCh----H
Q psy10222 1342 PVALVYIAETTEPKY--RGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFPCASFIFAYFT-PESP----P 1410 (1693)
Q Consensus 1342 ~~~~~~i~e~~p~~~--Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~~v~lv~~~~l-pEsp----~ 1410 (1693)
+...+++.|++|+++ |+.+.++++.+.++|..++|.+++.+ +||+.|++.++..++.++..++. |+.. +
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL 206 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 999999999999998 77788889999999999999999887 89999999877766655544332 2110 0
Q ss_pred HHHhcCCHHHHHHHHHH----------------HhCC-CCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhccc
Q psy10222 1411 WLASKGFTVQAQQAFYW----------------LRGH-TAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCT 1473 (1693)
Q Consensus 1411 ~l~~~~~~~~a~~~l~~----------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1473 (1693)
.-..+.+.++.++..+. ..+. +.++.............. ... .. ..++.+. ....+++
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~-~~~~~~~--~~~~~~~ 281 (491)
T 4aps_A 207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPV-FYF-AW-MISSVKV--TSTEHLR 281 (491)
T ss_dssp CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH-HHH-HH-HC--------------
T ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHH-HHH-HH-Hhhcccc--cHHHHHH
Confidence 00011122333332222 1111 111111110000000000 000 00 0000000 0000111
Q ss_pred CchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHH-----
Q psy10222 1474 EFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLAL----- 1546 (1693)
Q Consensus 1474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~----- 1546 (1693)
... ........ ......+.....+.|.+.++ .+.+ .+.+.......++.+++.++.+++.||++||+...
T Consensus 282 ~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~ 358 (491)
T 4aps_A 282 VVS--YIPLFIAA-VLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFA 358 (491)
T ss_dssp CTT--HHHHHHHH-HHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHH
T ss_pred HHH--HHHHHHHH-HHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHH
Confidence 111 11111111 11111223333445555554 3554 55666677778888889999999999999986544
Q ss_pred HHHHHHHHHHHHHHHHHHHhh--ccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHH
Q psy10222 1547 LSCLGTCLSLLGVASILKFMQ--GLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFV 1624 (1693)
Q Consensus 1547 ~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i 1624 (1693)
.+....+++.+.+ ....... ....+........+..+.+.....+..+.+..|.+|++.|+++.|+.+....+|+.+
T Consensus 359 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i 437 (491)
T 4aps_A 359 VGLMFAGLSFLLM-AIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL 437 (491)
T ss_dssp HHHHHHHHHHTTT-HHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444 2211110 111223333334444445555556777889999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhccCCCCC
Q psy10222 1625 VVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNK 1666 (1693)
Q Consensus 1625 ~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~~~et~~~ 1666 (1693)
++.+.+.+.+ .++...+.+++++++++.++.++..++.+++
T Consensus 438 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 438 NAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999876654 4677888888888888888777666665543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-25 Score=276.17 Aligned_cols=340 Identities=14% Similarity=0.006 Sum_probs=255.1
Q ss_pred hhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHh---
Q psy10222 297 SSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISS--- 373 (1693)
Q Consensus 297 ~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~--- 373 (1693)
..+.........+|.+.++ + .+.++.+++.+.+.++..+++++.|+++||+|||++++.+.++++++++++++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~---~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~ 114 (451)
T 1pw4_A 39 AYYLVRKNFALAMPYLVEQ---G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW 114 (451)
T ss_dssp HHHHHHTSHHHHHHHTTSS---T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHH---h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444444455667777666 8 99999999999999999999999999999999999999999999999999999
Q ss_pred -cchhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccC-eEEEeecC--
Q psy10222 374 -ATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHL-GLVMALVG-- 449 (1693)
Q Consensus 374 -a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~g-Wr~~f~i~-- 449 (1693)
+++++.++++|+++|++.|...+...+++.|++|+++|++++|+.+.+..+|.+++|++++++.+.+| ||++|++.
T Consensus 115 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~ 194 (451)
T 1pw4_A 115 ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAF 194 (451)
T ss_dssp HHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999889999 99988875
Q ss_pred -----------CCccccccc---ccCc--c-------------ccccc---ccchhhHHHH-HHHHHHHHHHhhhhhhhh
Q psy10222 450 -----------PLPQRSYLH---LGNR--L-------------FSFSY---LTGYCLFQLL-AAAGPIFATLGSGMTSGF 496 (1693)
Q Consensus 450 -----------~~p~~~~~~---~~~~--~-------------~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 496 (1693)
..|+.+... ...+ . ...+. ....+.+... ......+..+.......+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (451)
T 1pw4_A 195 CAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDW 274 (451)
T ss_dssp HHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111100 0000 0 00000 0001112222 222222222222223333
Q ss_pred hhhcccc-cccCCC---CcccccchhHHHHHHHHHHhhhhh--chhHHHHHHHHHHH-HHHHHHHhc--chHHHHHHHHH
Q psy10222 497 SAVLLPQ-LESANS---TIPITPEDGSWIACVLSCILMDLY--GRRFTNLILCVPFV-LGWVIMSMA--TEVWLICVGRF 567 (1693)
Q Consensus 497 ~~~~l~~-~~~~~~---~~~~~~~~g~~iG~~~~G~lsDr~--GRk~~l~~~~~~~~-i~~~~~~~~--~~~~~l~~~r~ 567 (1693)
.+.++.+ ++.+.. .+......+.++|+++.|+++||+ |||+.+..+..+.. ++.++..+. .+.+.+.+..+
T Consensus 275 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (451)
T 1pw4_A 275 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI 354 (451)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHH
Confidence 3333332 111111 122334457788999999999999 99998887777666 555555554 36777888888
Q ss_pred HHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHH-HHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHhhc
Q psy10222 568 LTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISS-GIFISHLLGTFL----HWKTASAVCALFPFISCIFVYS 640 (1693)
Q Consensus 568 l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~l-G~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~~~ 640 (1693)
+.|++.+...+...+++.|..|++.||++.++.+....+ |..+++.+.+.+ +|+..+.+.++..++..+..++
T Consensus 355 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 355 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888899999999999999999999999999 999999887665 7899988888877777665544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.5e-24 Score=266.81 Aligned_cols=338 Identities=13% Similarity=0.033 Sum_probs=249.0
Q ss_pred hhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHH---H
Q psy10222 296 FSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIII---S 372 (1693)
Q Consensus 296 ~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~---~ 372 (1693)
+..+......+...|.+.++ +|++.++.+++.+.+.+++.++.++.|++.||+|||++++.+.++++++++++ +
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~ 112 (438)
T 3o7q_A 36 FLWAVANNLNDILLPQFQQA---FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA 112 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Confidence 34444445566778888888 99999999999999999999999999999999999999999999999999999 8
Q ss_pred hcchhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccc-cccC----------
Q psy10222 373 SATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPT-VRHL---------- 441 (1693)
Q Consensus 373 ~a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~-~~~g---------- 441 (1693)
++++++.++++|+++|+|.|...+...++++|++|+++|++++|+.+.+..+|.+++|++++++. +..+
T Consensus 113 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~ 192 (438)
T 3o7q_A 113 EIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKM 192 (438)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHS
T ss_pred ccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999998 5555
Q ss_pred ---------------eEEEeecC--------------CCcccccccccCccc-c--cccccchhhHHHHH-HHHHHHHHH
Q psy10222 442 ---------------GLVMALVG--------------PLPQRSYLHLGNRLF-S--FSYLTGYCLFQLLA-AAGPIFATL 488 (1693)
Q Consensus 442 ---------------Wr~~f~i~--------------~~p~~~~~~~~~~~~-~--~~~~~~~~~~~~~~-~~~~~~~~~ 488 (1693)
||+.|++. ..|+.+....+++.. . .......+.+.... .....+...
T Consensus 193 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (438)
T 3o7q_A 193 SPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVG 272 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHHHHHhChHHHHHHHHHHHHHH
Confidence 99888653 222222111000000 0 00000111122222 222222222
Q ss_pred hhhhhhhhhhhc-cccc-ccCCC---CcccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHH
Q psy10222 489 GSGMTSGFSAVL-LPQL-ESANS---TIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLIC 563 (1693)
Q Consensus 489 ~~~~~~~~~~~~-l~~~-~~~~~---~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~ 563 (1693)
.......+.+.+ +.+. +.+.. .+......+..+|.++.|+++||+|||+.+..+.++..++.++..+.++.+.++
T Consensus 273 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (438)
T 3o7q_A 273 AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLI 352 (438)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 222333344444 3322 11111 122334457788999999999999999999999998888888888887766544
Q ss_pred HHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh----h-hHHHHHHhHHHHHHHHHHh
Q psy10222 564 VGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL----H-WKTASAVCALFPFISCIFV 638 (1693)
Q Consensus 564 ~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~----~-wr~~~~~~~~~~~i~~~~~ 638 (1693)
. -++.|++.+...+...++..|..|++ |+.+.++.. ...+|..+++.+.+.+ + ++..+.+.++..++.++..
T Consensus 353 ~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 429 (438)
T 3o7q_A 353 A-LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFA 429 (438)
T ss_dssp H-HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 4 48889999999999999999999976 888888776 5568888888777655 5 7777776655544444433
Q ss_pred h
Q psy10222 639 Y 639 (1693)
Q Consensus 639 ~ 639 (1693)
+
T Consensus 430 ~ 430 (438)
T 3o7q_A 430 R 430 (438)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.8e-25 Score=268.31 Aligned_cols=351 Identities=13% Similarity=0.079 Sum_probs=260.6
Q ss_pred HHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHH
Q psy10222 1235 GGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGW 1314 (1693)
Q Consensus 1235 ~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ 1314 (1693)
..+++..+...++.+...+.+|.+.+ +++.++.+.+++.+.+.++..++++++|+++||+|||++++.+.++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMAR---DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 34556677888899999999999885 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHH
Q psy10222 1315 VIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAV 1390 (1693)
Q Consensus 1315 ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i 1390 (1693)
++.++++|++.++++|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+ +||+.|++
T Consensus 80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 89999999
Q ss_pred hHHHHHHHHH-HhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHh
Q psy10222 1391 CALFPCASFI-FAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKN 1469 (1693)
Q Consensus 1391 ~~i~~~v~lv-~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1469 (1693)
.+++.++..+ ..+++||+|+.. +++ ++.+...++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~--~~~------------------------------------------~~~~~~~~~~ 195 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPVD--APR------------------------------------------TRLLTSYKTL 195 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTTT--CCC------------------------------------------CCTTTCSTHH
T ss_pred HHHHHHHHHHHHHHHCcccCCCC--ccc------------------------------------------ccHHHHHHHH
Confidence 9988877766 444588886420 000 0001122333
Q ss_pred hcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHH
Q psy10222 1470 ILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALL 1547 (1693)
Q Consensus 1470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~ 1547 (1693)
++++..+.. ....+...........+.|.+.++ .|.+ .+.+.......++.+++.++.+++.||.+++ ...
T Consensus 196 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~ 268 (375)
T 2gfp_A 196 FGNSGFNCY-----LLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQ 268 (375)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHH
T ss_pred hcCcchHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 333322221 111222233445566677776665 4666 5667777778888899999999999998873 222
Q ss_pred HHHH-HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHH
Q psy10222 1548 SCLG-TCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVV 1626 (1693)
Q Consensus 1548 ~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~ 1626 (1693)
+... ...+...+ ..... . .++.+.........++......+....+..|.+| +.|+++.++.+..+.++..+++
T Consensus 269 ~~~~~~~~~~~~~--~~~~~-~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~ 343 (375)
T 2gfp_A 269 SVICCLLAGLLMW--IPDWF-G-VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLA 343 (375)
T ss_dssp HHHHHHHTSSSSS--HHHHH-H-HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHH--HHhhh-c-cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHH
Confidence 2222 11111111 00110 0 1122222223333334444566777888999998 8999999999999999999999
Q ss_pred HHHHHHHHhcCcchhHHH
Q psy10222 1627 KTGPLLFLSIGTPETFGL 1644 (1693)
Q Consensus 1627 ~~~~~l~~~~g~~~~f~i 1644 (1693)
.+.+.+.+..++...+.+
T Consensus 344 ~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 344 SLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp TTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcccHHHHH
Confidence 999988887666555544
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.2e-23 Score=261.51 Aligned_cols=323 Identities=13% Similarity=0.052 Sum_probs=234.7
Q ss_pred cCCcccchhhHHHHHHHHHHHHHHHHhhhhccc-cCCchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhccccch
Q psy10222 318 TIPITTEDASWIASMAALPMAVACVLGCIAMDS-CGRRFSNLILCIPFVLGWIIISSATKVWLLCVGRFLTGLSIGFLTP 396 (1693)
Q Consensus 318 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~-~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~~R~l~Gig~g~~~~ 396 (1693)
++|.+.++.+++.+.+.++..+++++.|+++|| +|||+++..+.++++++++++++++|+++++++|+++|+|.|...|
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence 389999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccCccc--chhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC-----------------CCcccccc
Q psy10222 397 PAIVYIAETSEPKY--RGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG-----------------PLPQRSYL 457 (1693)
Q Consensus 397 ~~~a~i~~~~p~~~--rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~-----------------~~p~~~~~ 457 (1693)
...++++|++|+++ |++++++.+.+..+|..++|++++++.+.+|||++|++. ..+.....
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLR 207 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSC
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccC
Confidence 99999999999988 778888899999999999999999999999999988775 00000000
Q ss_pred cccCccc-cc-c-----------------------------------------------------c---ccchhhHHHHH
Q psy10222 458 HLGNRLF-SF-S-----------------------------------------------------Y---LTGYCLFQLLA 479 (1693)
Q Consensus 458 ~~~~~~~-~~-~-----------------------------------------------------~---~~~~~~~~~~~ 479 (1693)
+...... +. + . ...........
T Consensus 208 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (491)
T 4aps_A 208 PTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIP 287 (491)
T ss_dssp CSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHH
T ss_pred CCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 0000000 00 0 0 00000000111
Q ss_pred -HHHHHHHHHhhhhhhhhhhhcccccccC----CCCcccccchhHHHHHHHHHHhhhhhchhHHHH-----HHHHHHHHH
Q psy10222 480 -AAGPIFATLGSGMTSGFSAVLLPQLESA----NSTIPITPEDGSWIACVLSCILMDLYGRRFTNL-----ILCVPFVLG 549 (1693)
Q Consensus 480 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~-----~~~~~~~i~ 549 (1693)
..................+.+..+.... ...+......+.++++++.|++.||+|||+... .+..+..++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~ 367 (491)
T 4aps_A 288 LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLS 367 (491)
T ss_dssp HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 1111111222222222222232221111 112333445577788999999999999986544 666666666
Q ss_pred HHHHHhcc---------hHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh--
Q psy10222 550 WVIMSMAT---------EVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL-- 618 (1693)
Q Consensus 550 ~~~~~~~~---------~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~-- 618 (1693)
.++..+.. +.+.+.+.-++.|++.+...+...+++.|..|++.||.+.++.+....+|..+++.+.+..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 368 FLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp HTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55554432 6677888889999999999999999999999999999999999999999999999887766
Q ss_pred -hhHHHHHHhHHHHHHHHHHhhc
Q psy10222 619 -HWKTASAVCALFPFISCIFVYS 640 (1693)
Q Consensus 619 -~wr~~~~~~~~~~~i~~~~~~~ 640 (1693)
++...+.+.++..++..+..++
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 448 KSEVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp SSTTHHHHHTHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666655544433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.7e-23 Score=251.91 Aligned_cols=327 Identities=15% Similarity=0.064 Sum_probs=236.6
Q ss_pred HHhhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHh
Q psy10222 294 GDFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISS 373 (1693)
Q Consensus 294 ~~~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~ 373 (1693)
..+..+.........+|.+.++ +|.++++.++..+.+.++..+++++.|+++||+|||+++..+.++.+++++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 84 (375)
T 2gfp_A 8 LVAVGQMAQTIYIPAIADMARD---LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT 84 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 4455566666666777777776 9999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC----
Q psy10222 374 ATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG---- 449 (1693)
Q Consensus 374 a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~---- 449 (1693)
+++++.+++.|+++|++.+...+...+++.|++|++||++++|+.+.+..+|..++|++++++.+.+|||+.|++.
T Consensus 85 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (375)
T 2gfp_A 85 TSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLC 164 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888754
Q ss_pred ---------CCcccccccccCcccccccccchhhHHHHH-HHHHHHHHHhhhhhhhhhhhcccc-cccCC---CCccccc
Q psy10222 450 ---------PLPQRSYLHLGNRLFSFSYLTGYCLFQLLA-AAGPIFATLGSGMTSGFSAVLLPQ-LESAN---STIPITP 515 (1693)
Q Consensus 450 ---------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~---~~~~~~~ 515 (1693)
..|+.+....+++..........+.+.... .....+..........+.+.++.+ ++.+. ..+....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 244 (375)
T 2gfp_A 165 AGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILP 244 (375)
T ss_dssp HHHHCCCCCSSCCCSTTTCCCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHCcccCCCCcccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 112211111110000011111112222222 222222222222223333333322 11111 1123344
Q ss_pred chhHHHHHHHHHHhhhhhchhHHHHHHHHH-HHHHHH--HHHh--cchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCc
Q psy10222 516 EDGSWIACVLSCILMDLYGRRFTNLILCVP-FVLGWV--IMSM--ATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEP 590 (1693)
Q Consensus 516 ~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~-~~i~~~--~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~ 590 (1693)
..+.++++++.|++.||+||+. ..+... ...+.. .... .++.+.+.+..++.|++.+...+...+++.|..|
T Consensus 245 ~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p- 321 (375)
T 2gfp_A 245 IPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP- 321 (375)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-
Confidence 5677889999999999999832 223222 222211 1222 2366777788899999999999999999999998
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHH
Q psy10222 591 RYRGAILAIVSLAISSGIFISHLLGTFL----HWKTASAV 626 (1693)
Q Consensus 591 ~~Rg~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~~~~ 626 (1693)
++||++.++.+....+|..+++.+.+.+ +|+..+.+
T Consensus 322 ~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 322 FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 8999999999999999999988776655 45555544
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-22 Score=249.71 Aligned_cols=370 Identities=12% Similarity=0.029 Sum_probs=233.8
Q ss_pred hhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHH---HHHhhhhH
Q psy10222 1247 AGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWV---IISLATEV 1323 (1693)
Q Consensus 1247 ~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~l---l~~~a~~~ 1323 (1693)
......+.+|...+ +++|.++.+.+++.+.+.++..++++++|+++||+|||++++.+..++.++.. .+++++..
T Consensus 22 ~~~~~~~~~~~~l~--~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 99 (417)
T 2cfq_A 22 IMGAYFPFFPIWLH--DINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99 (417)
T ss_dssp HHHHHTTTHHHHHH--TTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666432 36899999999999999999999999999999999999999998887765322 12333322
Q ss_pred -HHHHHHHHHHhhhhhchhhhHhHHhhhccCC--CcchhhhHHHHHHHHHHHHHHHHhhhhc---hhHHHHHHhHHHHHH
Q psy10222 1324 -WVILAGRFLTGFALGLSSPVALVYIAETTEP--KYRGVLSALLCTAVAIGIFTAHLLGTFL---HWKTTSAVCALFPCA 1397 (1693)
Q Consensus 1324 -~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~--~~Rg~~~~l~~~~~~lG~~lg~~lg~~l---~WR~~f~i~~i~~~v 1397 (1693)
..+...|++.|++.|...+.....+.++.++ ++|+...+.......+|..++|.+++++ +||+.|++.+++.++
T Consensus 100 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~ 179 (417)
T 2cfq_A 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALI 179 (417)
T ss_dssp HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 1245667777776666555555555555443 4567777777777888889999888877 799999988877655
Q ss_pred HHHHhcccc-CChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCch
Q psy10222 1398 SFIFAYFTP-ESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFL 1476 (1693)
Q Consensus 1398 ~lv~~~~lp-Esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1476 (1693)
..+..++.| |+|+ +.+.+ +.+ +.+ +++.....+++.++++..+
T Consensus 180 ~~~~~~~~~~~~~~----~~~~~------------~~~------------~~~--------~~~~~~~~~~~~~~~~~~~ 223 (417)
T 2cfq_A 180 LAVLLFFAKTDAPS----SATVA------------NAV------------GAN--------HSAFSLKLALELFRQPKLW 223 (417)
T ss_dssp HHHHSCSSCCCCSC----SSCSS------------SSS------------SSC--------CCCCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCccccc----ccccc------------ccc------------ccc--------cccccHHHHHHHhcCCchh
Confidence 555555544 4431 00000 000 000 0000112234455554433
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc-CCC----chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHH
Q psy10222 1477 KPLAIILVFFFVQQFSGLNTLIFYTVGISKEV-SPD----VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLG 1551 (1693)
Q Consensus 1477 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~s----~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~ 1551 (1693)
...+..... ...+.....+.|.++++. +.. ...+.......++.+++.++.+++.||+|||+.+..+...
T Consensus 224 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~ 298 (417)
T 2cfq_A 224 FLSLYVIGV-----SCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 222211111 112222333455555442 211 1224445556677888899999999999999988877776
Q ss_pred HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHH-HHHHHHHHHHHHHHHH
Q psy10222 1552 TCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGIS-TCFAFLTLFVVVKTGP 1630 (1693)
Q Consensus 1552 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~-~~~~~lg~~i~~~~~~ 1630 (1693)
.++..+.+ . ...+.+.......+ .........+..+.+++|.+|++.|+++.+.. +..+.+|++++|.+.+
T Consensus 299 ~~~~~~~~-----~--~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G 370 (417)
T 2cfq_A 299 MSVRIIGS-----S--FATSALEVVILKTL-HMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG 370 (417)
T ss_dssp HHHHHHHH-----T--TCCSHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHH
T ss_pred HHHHHHHH-----H--HhccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHH
Confidence 66654433 1 11222222222222 22222223344567899999999999999995 7888999999999999
Q ss_pred HHHHhcCcchhHHHHHHHHHHHHHHHhhhccCCCCCC
Q psy10222 1631 LLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKT 1667 (1693)
Q Consensus 1631 ~l~~~~g~~~~f~i~~~~~ll~~v~~~~~~~et~~~~ 1667 (1693)
.+.+..|+...|.+.+++.+++.++.++..||+++.+
T Consensus 371 ~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 371 NMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp THHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 9999888888888888888888877776667655443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-21 Score=247.02 Aligned_cols=400 Identities=11% Similarity=0.057 Sum_probs=220.5
Q ss_pred CCcchhHHHHHHhHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhhhhhchhhhH
Q psy10222 1267 ITPEDGTWIASMASLPTFIACILGSFLMEMY-GRRLTNLVLCIPFIMGWVIISLAT-EVWVILAGRFLTGFALGLSSPVA 1344 (1693)
Q Consensus 1267 is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~-GRr~~ll~~~~l~~i~~ll~~~a~-~~~~lli~R~l~Gig~g~~~~~~ 1344 (1693)
.++.+.+++.+++.++..++++++|+++||+ |||+++..+.++..++.+++++++ |++.++++|+++|++.|...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 9999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hHHhhhccCCCcchhhhHH---HHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHHHHHHHHHhccc-cCChHHHHhcC
Q psy10222 1345 LVYIAETTEPKYRGVLSAL---LCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFPCASFIFAYFT-PESPPWLASKG 1416 (1693)
Q Consensus 1345 ~~~i~e~~p~~~Rg~~~~l---~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~~v~lv~~~~l-pEsp~~l~~~~ 1416 (1693)
.+++.|++|+++|+++.+. ...+.++|.+++|.+++.+ +||+.|++.++..++..+..++. |+.++--.++.
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPK 210 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC----
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCc
Confidence 9999999999999877766 8899999999999998877 89999999988877665554432 22110000000
Q ss_pred CHHHHHHHHH-HHhCCCCchHH--HHHHHHHHh----hhhcccccc----------hhhhhhhhhhhhHh------hc--
Q psy10222 1417 FTVQAQQAFY-WLRGHTAESEF--EFKSMLNHA----ERSTITKSE----------NMTDKKKKLEWKKN------IL-- 1471 (1693)
Q Consensus 1417 ~~~~a~~~l~-~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~----------~~~~~~~~~~~~~~------~~-- 1471 (1693)
+..+..+.+. ..+....+.+. ...+..... .....+... ...+++.+.++++. ..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (524)
T 2xut_A 211 DPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDA 290 (524)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSS
T ss_pred cchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHh
Confidence 0111111110 01111111110 000000000 000000000 00000001111000 00
Q ss_pred ccCchHHHHHHHHHHH--HHHhhhhHHHHHhHHHHHhhcCCCc--hhHHHHHHHHHHHHHHHHHHHHhh----hhcCCh-
Q psy10222 1472 CTEFLKPLAIILVFFF--VQQFSGLNTLIFYTVGISKEVSPDV--NEYTATIVIDIVRVVMAFVTCGLL----RIFGRR- 1542 (1693)
Q Consensus 1472 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~g~s~--~~~~~~~~~~i~~~ig~~~~g~l~----dr~grr- 1542 (1693)
....+++.......+. ......+.....+.+......+.+. ..+.......++.+++..+.+++. +|.++|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (524)
T 2xut_A 291 AVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL 370 (524)
T ss_dssp SSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCC
Confidence 0011122211111111 0001111111111122222222211 233333333344445555555543 443332
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHhh--ccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHH
Q psy10222 1543 ---PLALLSCLGTCLSLLGVASILKFMQ--GLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCF 1617 (1693)
Q Consensus 1543 ---~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~ 1617 (1693)
+.+..+..+.+++.+.+ ....... ....+........++.+.+.....+..+.+..|..|++.|+++.|+.+..
T Consensus 371 ~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 449 (524)
T 2xut_A 371 TALRKMGAGIAITGLSWIVV-GTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLS 449 (524)
T ss_dssp CCHHHHHTHHHHHHHHHHTT-TTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGG
T ss_pred ChHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHH
Confidence 34455555555554443 1100000 00112222333344444555556677788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc----------Cc-chhHHHHHHHHHHHHHHHhhhccCCCCCC
Q psy10222 1618 AFLTLFVVVKTGPLLFLSI----------GT-PETFGLYGCITAFGFVFLYIFLPETKNKT 1667 (1693)
Q Consensus 1618 ~~lg~~i~~~~~~~l~~~~----------g~-~~~f~i~~~~~ll~~v~~~~~~~et~~~~ 1667 (1693)
..+|+.+++.+.+.+.+.. +. +..|++.+++++++.++.+++.+++++++
T Consensus 450 ~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 450 VTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 9999999999999876532 21 22377777777777776666666665544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=233.50 Aligned_cols=298 Identities=11% Similarity=0.037 Sum_probs=205.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHhhhhcccc-CCchhHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHhhhccccchhh
Q psy10222 321 ITTEDASWIASMAALPMAVACVLGCIAMDSC-GRRFSNLILCIPFVLGWIIISSAT-KVWLLCVGRFLTGLSIGFLTPPA 398 (1693)
Q Consensus 321 ~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~-Grr~vl~~~l~~~~~~s~l~~~a~-s~~~ll~~R~l~Gig~g~~~~~~ 398 (1693)
.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++++++.+++++++ +++.+++.|+++|++.|...|..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 9999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hhhhccccCcccchhHHHH---HHHHHHhhHHHHhhhhcccccccCeEEEeecC-------------CCccccc-ccccC
Q psy10222 399 IVYIAETSEPKYRGAFLAV---SSLAISSGILVSHLLDHLPTVRHLGLVMALVG-------------PLPQRSY-LHLGN 461 (1693)
Q Consensus 399 ~a~i~~~~p~~~rg~a~g~---~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~-------------~~p~~~~-~~~~~ 461 (1693)
.+++.|++|+++|+++.+. ...+..+|.+++|++++++.+.+|||++|++. ..+.... .+...
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPK 210 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC----
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCc
Confidence 9999999999999887777 99999999999999999999999999888764 0111000 00000
Q ss_pred ccccc--------ccc----------------------------------------------------------------
Q psy10222 462 RLFSF--------SYL---------------------------------------------------------------- 469 (1693)
Q Consensus 462 ~~~~~--------~~~---------------------------------------------------------------- 469 (1693)
+..+. +..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (524)
T 2xut_A 211 DPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDA 290 (524)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSS
T ss_pred cchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHh
Confidence 00000 000
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhhhhhhhhccccc-c-cCCC------CcccccchhHHHHHHHHHHhh----hhhchh-
Q psy10222 470 TGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQL-E-SANS------TIPITPEDGSWIACVLSCILM----DLYGRR- 536 (1693)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~~~------~~~~~~~~g~~iG~~~~G~ls----Dr~GRk- 536 (1693)
....++.........................++.. . .+.. .+......+.++++.+.+++. ||.|||
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (524)
T 2xut_A 291 AVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL 370 (524)
T ss_dssp SSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCC
Confidence 00000011100000000000001111111111111 0 0110 011222234455555555553 444432
Q ss_pred ---HHHHHHHHHHHHHHHHHHhc---------chHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHH
Q psy10222 537 ---FTNLILCVPFVLGWVIMSMA---------TEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAI 604 (1693)
Q Consensus 537 ---~~l~~~~~~~~i~~~~~~~~---------~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~ 604 (1693)
+.+..+.++.+++.++..+. .+.+.+++..++.|++.+...+...+++.|..|++.||++.++.+...
T Consensus 371 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 450 (524)
T 2xut_A 371 TALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSV 450 (524)
T ss_dssp CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHH
Confidence 45666777777766665553 366778888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhh
Q psy10222 605 SSGIFISHLLGTFL 618 (1693)
Q Consensus 605 ~lG~~~~~~~~~~~ 618 (1693)
.+|..+++.+.+..
T Consensus 451 ~~g~~~g~~~~g~~ 464 (524)
T 2xut_A 451 TVGNLWVLLANVSV 464 (524)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887655
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-20 Score=229.37 Aligned_cols=325 Identities=12% Similarity=0.052 Sum_probs=216.9
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHH---HHHhcchh-HHHHHHHHHHhhhcccc
Q psy10222 319 IPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWI---IISSATKV-WLLCVGRFLTGLSIGFL 394 (1693)
Q Consensus 319 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~---l~~~a~s~-~~ll~~R~l~Gig~g~~ 394 (1693)
+|.++.+.|++.+.+.++..+++++.|+++||+||||+++.+..++++++. .+++++.. ..++.+|++.|++.|..
T Consensus 38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 117 (417)
T 2cfq_A 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117 (417)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999988876432 22344332 23456788888877776
Q ss_pred chhhhhhhccccCc--ccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecCC-------------Cccccccc-
Q psy10222 395 TPPAIVYIAETSEP--KYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVGP-------------LPQRSYLH- 458 (1693)
Q Consensus 395 ~~~~~a~i~~~~p~--~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~~-------------~p~~~~~~- 458 (1693)
++.....+.++.++ ++|+.+.|....+..+|.+++|++++++.+ ++||++|++.. .|+.+...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (417)
T 2cfq_A 118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSSAT 196 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSC
T ss_pred HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcccccccc
Confidence 66666667666654 467888899988889999999999999876 68999887751 11110000
Q ss_pred ccCc-c-cccc-c----ccchhhHHHHHHHHH-HHHHHhhhhhhhhhhhcccccccC----CCC---cccccchhHHHHH
Q psy10222 459 LGNR-L-FSFS-Y----LTGYCLFQLLAAAGP-IFATLGSGMTSGFSAVLLPQLESA----NST---IPITPEDGSWIAC 523 (1693)
Q Consensus 459 ~~~~-~-~~~~-~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~----~~~---~~~~~~~g~~iG~ 523 (1693)
.+++ . ...+ . ....+.++....... ............+.+.++.+.... ... .......+..++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 276 (417)
T 2cfq_A 197 VANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIM 276 (417)
T ss_dssp SSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHH
Confidence 0000 0 0000 0 000111222211111 111111111111222222221110 100 1112223556788
Q ss_pred HHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHH-HHH
Q psy10222 524 VLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAI-VSL 602 (1693)
Q Consensus 524 ~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~-~~~ 602 (1693)
++.|+++||+|||+.+..+..+..++.++..+.++.+.+++..++.+++.+...+....++.|..|++.||++.+. ++.
T Consensus 277 ~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 356 (417)
T 2cfq_A 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCF 356 (417)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 9999999999999999888888877777777777778888888888888777777788999999999999999888 488
Q ss_pred HHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHhh-cccCC
Q psy10222 603 AISSGIFISHLLGTFL----HWKTASAVCALFPFISCIFVY-STPES 644 (1693)
Q Consensus 603 ~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~~-~lpES 644 (1693)
...+|..++|.+.+.+ +++..+.+.++..++..+..+ +.||.
T Consensus 357 ~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 357 FKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp THHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 8889998888877654 577788877777776665543 35543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1693 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 3e-14 | |
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 2e-06 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 1e-05 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 0.002 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 74.7 bits (182), Expect = 3e-14
Identities = 48/412 (11%), Positives = 113/412 (27%), Gaps = 28/412 (6%)
Query: 1267 ITPEDGTWIASMASLPTFIACILGSFLMEMYGRR----LTNLVLCIPFIMGWVIISLATE 1322
+ D + S S+ + + + + R ++ + + +
Sbjct: 56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 115
Query: 1323 VWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL 1382
+ V+ FL G+ G+ P + K RG + ++ A +G LL
Sbjct: 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL---- 171
Query: 1383 HWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSM 1442
+ + + ++ + + A AF +R +
Sbjct: 172 -------------FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR------DTPQSCG 212
Query: 1443 LNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTV 1502
L E ++ +K ++ K I L + + L I
Sbjct: 213 LPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS 272
Query: 1503 GISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASI 1562
+ ++ + T + + G L +
Sbjct: 273 PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 332
Query: 1563 LKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTL 1622
+ + + ++ M + F+ G L + EL P+ +G + F +L
Sbjct: 333 IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 392
Query: 1623 FVVVKT-GPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQIED 1673
V G F + + + L + + K + Q +++
Sbjct: 393 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 50.1 bits (118), Expect = 2e-06
Identities = 45/373 (12%), Positives = 92/373 (24%), Gaps = 54/373 (14%)
Query: 321 ITTEDASWIASMAALPMAVACVLGCIAMDSCGRR----FSNLILCIPFVLGWIIISSATK 376
+ D + S ++ + + D R ++ + + + +
Sbjct: 56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 115
Query: 377 VWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLP 436
+ ++ V FL G G PP + K RG ++V + A + G + LL L
Sbjct: 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175
Query: 437 T------------VRHLGLVMALV-------------------------GPLPQRSYLHL 459
+++AL +++ L
Sbjct: 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL 235
Query: 460 GNRLFSFSYLTGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQLESANSTIPITPEDGS 519
+ Y+ L +A A L G+ L A
Sbjct: 236 TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYE 295
Query: 520 WIA---CVLSCILMDLYGRRFTNLILCVPFVLGWVIMSM-----ATEVWLICVGRFLTGL 571
+ +L + D R L + + A + + + G
Sbjct: 296 YAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF 355
Query: 572 SVGLSSPPSIVYIAESTEPRYRGAILAIVSL-----AISSGIFISHLLGTFLHWKTASAV 626
+ ++ E + G L + I F W V
Sbjct: 356 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 415
Query: 627 CALFPFISCIFVY 639
++ I +
Sbjct: 416 MIGGSILAVILLI 428
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 47.5 bits (111), Expect = 1e-05
Identities = 54/396 (13%), Positives = 101/396 (25%), Gaps = 41/396 (10%)
Query: 293 MGDFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCG 352
+ F +G P + I+ D I + +L + L + D G
Sbjct: 14 LFFFFYFFIMGAYFPFFPIW--LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLG 71
Query: 353 RR----FSNLILCIPFVLGWIIISSATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEP 408
R + + + F +I I + + VG + G+ +GF + E
Sbjct: 72 LRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK 131
Query: 409 KYRGAFLAVSSLAISSG------------------------------ILVSHLLDHLPTV 438
R + + IL L
Sbjct: 132 VSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDA 191
Query: 439 RHLGLVMALVGPLPQRSYLHLGNRLFSFSYLTGYCLFQLLAAAGPIFATLGSGMTSGFSA 498
V VG L L LF L L+ + +
Sbjct: 192 PSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFF 251
Query: 499 VLLPQLESANSTIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATE 558
Q + E + + ++++ G + L+ + + S AT
Sbjct: 252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS 311
Query: 559 VWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIV-SLAISSGIFISHLLGTF 617
+ + + L V YI E R+ I + + +L
Sbjct: 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGN 371
Query: 618 LH----WKTASAVCALFPFISCIFVYSTPESPSWLA 649
++ ++ A V L + T P L+
Sbjct: 372 MYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 40.5 bits (93), Expect = 0.002
Identities = 42/422 (9%), Positives = 91/422 (21%), Gaps = 32/422 (7%)
Query: 993 VILLMSYIVFVSFGLQPLPWIMAGEHTELFFLHPSVIVKIFQVKYLGPLTIMSTVTCGLL 1052
+ + F F + ++ + S IF L L + + L
Sbjct: 9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSL-LFQPLFGLLS 67
Query: 1053 RITGRRPIAILSTLGTAFSLLGLALMLKYPQEELPSFIPVILLMSYIVFVSFGVQPLPWI 1112
G R + G + + P + + V +
Sbjct: 68 DKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV--------GSIVGGIYLGFCFN 119
Query: 1113 MAGEVRYFTTYYIIHNHLFPQVTREIGSGITTCFGFLALFCAVKTEPLLFRSIGTPGTFG 1172
+ F + + G + +G+
Sbjct: 120 AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALI 179
Query: 1173 LYGKSKTAIRQNPRWNGRDCLPEVVHSLSRNVNVGTCVKRYYESKYCEQQSSYVRCDKLI 1232
L A P HS ++
Sbjct: 180 LAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLS------------- 226
Query: 1233 AAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSF 1292
L + + + S +T ++ +M L
Sbjct: 227 -----LYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPL 281
Query: 1293 LMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETT 1352
++ G + L+ + + S AT ++ + L F + YI
Sbjct: 282 IINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341
Query: 1353 EPKYRGVLSALLCTAV-----AIGIFTAHLLGTFLHWKTTSAVCALFPCASFIFAYFTPE 1407
E ++ + + A + + ++ V L + + FT
Sbjct: 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401
Query: 1408 SP 1409
P
Sbjct: 402 GP 403
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1693 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.97 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.89 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.88 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.79 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.1e-29 Score=317.00 Aligned_cols=398 Identities=13% Similarity=0.039 Sum_probs=287.7
Q ss_pred hhHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHH
Q psy10222 1228 CDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLC 1307 (1693)
Q Consensus 1228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~ 1307 (1693)
+.+|.++..+.++.+...++....+.+.|.++ |++.|++|.+++.+++.++.+++++++|+++||+|||+++..+.
T Consensus 21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~----~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~ 96 (447)
T d1pw4a_ 21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV----EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL 96 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT----SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 34677777788888888889888899999886 57999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh----hHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc-
Q psy10222 1308 IPFIMGWVIISLAT----EVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL- 1382 (1693)
Q Consensus 1308 ~l~~i~~ll~~~a~----~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l- 1382 (1693)
++..++.+++++++ +++.++++|+++|++.|...+....++.|++|+++|++++++++.+..+|.+++|++++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 176 (447)
T d1pw4a_ 97 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 176 (447)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh
Confidence 99999999998874 7789999999999999999999999999999999999999999999999999999887765
Q ss_pred ----hhHHHHHHhHHHHHHHHHHhcc-ccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchh
Q psy10222 1383 ----HWKTTSAVCALFPCASFIFAYF-TPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENM 1457 (1693)
Q Consensus 1383 ----~WR~~f~i~~i~~~v~lv~~~~-lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1457 (1693)
+||+.|++.+.+.++..+..++ ++|+|+....... ++ ...+.++... +.. ..
T Consensus 177 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~---~~~---------~~ 233 (447)
T d1pw4a_ 177 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-EE----------YKNDYPDDYN---EKA---------EQ 233 (447)
T ss_dssp HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-TT----------TCCC-----------------------
T ss_pred hhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchh-hh----------hhhhcccchh---hcc---------cc
Confidence 8999999998888776655544 6676643211110 00 0000000000 000 00
Q ss_pred hhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc-CCC-chhHHHHHHHHHHHHHHHHHHHHh
Q psy10222 1458 TDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEV-SPD-VNEYTATIVIDIVRVVMAFVTCGL 1535 (1693)
Q Consensus 1458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~s-~~~~~~~~~~~i~~~ig~~~~g~l 1535 (1693)
+...++...+..++++ .........+......+....+.|.++++. +.+ .+.+.......+..+++.++.+++
T Consensus 234 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 308 (447)
T d1pw4a_ 234 ELTAKQIFMQYVLPNK-----LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 308 (447)
T ss_dssp --CCTHHHHHHTSSCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHcCc-----hHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhh
Confidence 0011122223333332 222222222333334556667777777654 777 677788888899999999999999
Q ss_pred hhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHH
Q psy10222 1536 LRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGIST 1615 (1693)
Q Consensus 1536 ~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~ 1615 (1693)
.||++|++..........+..... .........+........+..++...+..+..+.+..|.+|++.|+++.|+.+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~ 385 (447)
T d1pw4a_ 309 SDKVFRGNRGATGVFFMTLVTIAT---IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTG 385 (447)
T ss_dssp HHHTSTTCHHHHHHHHHHHHHHHH---HHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred hhhccccccccccchhHHHHHHHH---HHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 999998876554444333333222 11112222233333333344445555566777788999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhc
Q psy10222 1616 CFAFLT-LFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFL 1660 (1693)
Q Consensus 1616 ~~~~lg-~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~~ 1660 (1693)
.+++++ ..++|.+.+.+.+..|++..+.+.+++.+++.++.+++.
T Consensus 386 ~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 386 LFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 998885 466789999999999999999888888887777666554
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=4.8e-23 Score=256.15 Aligned_cols=332 Identities=15% Similarity=0.002 Sum_probs=230.6
Q ss_pred HhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcc----hhHHH
Q psy10222 305 SAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSAT----KVWLL 380 (1693)
Q Consensus 305 ~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~----s~~~l 380 (1693)
.+.+.|.+. ++|+|.+|.||+.+.+.+++++++++.|+++||+|||+++..++++++++++++++++ +++.+
T Consensus 44 ~~~~~p~~~----~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (447)
T d1pw4a_ 44 FALAMPYLV----EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVM 119 (447)
T ss_dssp HHHHHHHTT----SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHH
T ss_pred HHHHHHHHH----HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHH
Confidence 445566553 3799999999999999999999999999999999999999999999999999998875 78899
Q ss_pred HHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccc-cCeEEEeecC----------
Q psy10222 381 CVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVR-HLGLVMALVG---------- 449 (1693)
Q Consensus 381 l~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~-~gWr~~f~i~---------- 449 (1693)
++.|+++|++.|..+++..++++|++|+++||+++|+++.+..+|.+++|.+++.+... .+||+.|++.
T Consensus 120 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 199 (447)
T d1pw4a_ 120 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALF 199 (447)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998886664 5899888764
Q ss_pred ------CCcccccccccCc-c---------ccccc--c------cchhhHHHH-HHHHHHHHHHhhhhhhhhhhhccccc
Q psy10222 450 ------PLPQRSYLHLGNR-L---------FSFSY--L------TGYCLFQLL-AAAGPIFATLGSGMTSGFSAVLLPQL 504 (1693)
Q Consensus 450 ------~~p~~~~~~~~~~-~---------~~~~~--~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ 504 (1693)
..|........++ . ..... . ...+.+... ......+..........+.+.++.+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (447)
T d1pw4a_ 200 AFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV 279 (447)
T ss_dssp HHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB
T ss_pred HHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccc
Confidence 1111111000000 0 00000 0 000111111 11111222222222222333333222
Q ss_pred ccCC----CCcccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHH---HHHHHh--cchHHHHHHHHHHHHhhhhC
Q psy10222 505 ESAN----STIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLG---WVIMSM--ATEVWLICVGRFLTGLSVGL 575 (1693)
Q Consensus 505 ~~~~----~~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~---~~~~~~--~~~~~~l~~~r~l~G~~~g~ 575 (1693)
...+ .........+.++|.++.|+++||++||+............ ...... ..+.+...+..++.|++.++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 359 (447)
T d1pw4a_ 280 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 359 (447)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred cccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 1111 11223344567789999999999999875433333222222 211111 34677778888889999988
Q ss_pred ChhHHHHHHHhccCcchhhHHHHHHHHHHHH-HHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHhhc
Q psy10222 576 SSPPSIVYIAESTEPRYRGAILAIVSLAISS-GIFISHLLGTFL----HWKTASAVCALFPFISCIFVYS 640 (1693)
Q Consensus 576 ~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~l-G~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~~~ 640 (1693)
..+...++..|..|++.||++.++.+....+ |..+++.+.+.+ +|+..+.+..+..++..++..+
T Consensus 360 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 360 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999887776 556677666544 7888888777766666555443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=1.3e-21 Score=239.13 Aligned_cols=379 Identities=11% Similarity=0.008 Sum_probs=252.0
Q ss_pred hHhhhhhhhhhhhhhhhh-hhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy10222 1240 ATLAAGSAGAYSAVLLPQ-LESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIIS 1318 (1693)
Q Consensus 1240 ~~~~~~~~~~~~~~~lp~-i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ll~~ 1318 (1693)
..++..+..+...+.+|. +++ ++|.|+.+.+++.+++.++..++++++|+++||+|||++++.+..+..++..+..
T Consensus 15 ~~f~~~~~~~~~~~~l~~~l~~---~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~ 91 (417)
T d1pv7a_ 15 FFFFYFFIMGAYFPFFPIWLHD---INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF 91 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 345556666677777776 443 6899999999999999999999999999999999999999999999999999988
Q ss_pred hhhhHHHH----HHHHHHHhhhhhchhhhHhHHhhhccCC--CcchhhhHHHHHHHHHHHHHHHHhhhhc---hhHHHHH
Q psy10222 1319 LATEVWVI----LAGRFLTGFALGLSSPVALVYIAETTEP--KYRGVLSALLCTAVAIGIFTAHLLGTFL---HWKTTSA 1389 (1693)
Q Consensus 1319 ~a~~~~~l----li~R~l~Gig~g~~~~~~~~~i~e~~p~--~~Rg~~~~l~~~~~~lG~~lg~~lg~~l---~WR~~f~ 1389 (1693)
+..+.... ++.+.+.|.+.+...........+..++ +++.+..+........|..+++.+++.+ +|++.++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 171 (417)
T d1pv7a_ 92 IFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFW 171 (417)
T ss_dssp HHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccccccccccc
Confidence 87766544 4566666666666665555555544443 3455667777888888999999988887 6666666
Q ss_pred HhHHHHHHHH-HHhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhH
Q psy10222 1390 VCALFPCASF-IFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKK 1468 (1693)
Q Consensus 1390 i~~i~~~v~l-v~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1468 (1693)
.......+.. +..+++||+|+.. .+.++.+ .. +.........+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------~~--------------------------~~~~~~~~~~~ 215 (417)
T d1pv7a_ 172 LGSGCALILAVLLFFAKTDAPSSA---TVANAVG-------AN--------------------------HSAFSLKLALE 215 (417)
T ss_dssp HHHHHHHHHHHHHHSSCCCSCSSS---CSSHHHH-------SC--------------------------CCCCCHHHHHH
T ss_pred chhhHHHHHHHHHHHHhcccccch---hhhhhhh-------hh--------------------------ccccccccccc
Confidence 6665555544 4445577775321 1000000 00 00011111122
Q ss_pred hhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcC----CC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChh
Q psy10222 1469 NILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVS----PD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRP 1543 (1693)
Q Consensus 1469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g----~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~ 1543 (1693)
..+.+..+. ........... ........+.+..... .+ ...........++..++..+.+++.||.++|+
T Consensus 216 ~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~ 290 (417)
T d1pv7a_ 216 LFRQPKLWF-LSLYVIGVSCT----YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN 290 (417)
T ss_dssp HTTSSHHHH-HHHHHHHHHHH----HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHH
T ss_pred ccccccccc-hhhhhHHHHHH----HHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhccccccc
Confidence 222222111 11111111111 1112222222222221 12 33445566667788888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHH-HHHHHHH
Q psy10222 1544 LALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGIST-CFAFLTL 1622 (1693)
Q Consensus 1544 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~-~~~~lg~ 1622 (1693)
.+..+..+.++..+.+ ...++.+......+..+.......+....+.+|.+|++.|+++.++.. ....+|.
T Consensus 291 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 362 (417)
T d1pv7a_ 291 ALLLAGTIMSVRIIGS--------SFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAM 362 (417)
T ss_dssp HHHHHHHHHHHHHHHH--------HTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHH
T ss_pred chhhhHHHHHHhhhcc--------ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHH
Confidence 9998888887776665 122223333333444444444556777788999999999999999864 5567999
Q ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhccCCCCCCHHH
Q psy10222 1623 FVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQ 1670 (1693)
Q Consensus 1623 ~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~~~et~~~~~~~ 1670 (1693)
.++|.+.+.+.+..|++..+++.+++.++..++..+.++++++.++++
T Consensus 363 ~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 363 IFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence 999999999999999999999999999988888888887777666544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=2.4e-19 Score=218.63 Aligned_cols=333 Identities=13% Similarity=0.024 Sum_probs=224.6
Q ss_pred HhhhhHH-hhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHhcchhHHH---
Q psy10222 305 SAVLLPQ-LQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLL--- 380 (1693)
Q Consensus 305 ~~~~~P~-l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~a~s~~~l--- 380 (1693)
....+|. +.++ +|+|++++|++.+.+.++..+++++.|+++||+||||+++.+..+.+++..+.+++++....
T Consensus 26 ~~~~l~~~l~~~---~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (417)
T d1pv7a_ 26 YFPFFPIWLHDI---NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYN 102 (417)
T ss_dssp HHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3334443 4444 89999999999999999999999999999999999999999999999999999988776554
Q ss_pred -HHHHHHHhhhccccchhhhhhhccccCc--ccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC--------
Q psy10222 381 -CVGRFLTGLSIGFLTPPAIVYIAETSEP--KYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG-------- 449 (1693)
Q Consensus 381 -l~~R~l~Gig~g~~~~~~~a~i~~~~p~--~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~-------- 449 (1693)
++.+.+.|.+.+...........+..++ +++.+..+....+...+..++|.+++++.+..+|+..+...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 182 (417)
T d1pv7a_ 103 ILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAV 182 (417)
T ss_dssp CHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHH
Confidence 4566666666666666666555555543 35667888888999999999999999986654444322221
Q ss_pred ----CCcccccccccCc-----cccccc----ccchhhHHHHHHHHHHHHHHhhhhhhhhhhhcccccccCC-------C
Q psy10222 450 ----PLPQRSYLHLGNR-----LFSFSY----LTGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQLESAN-------S 509 (1693)
Q Consensus 450 ----~~p~~~~~~~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~ 509 (1693)
..++........+ ...... .....+...........................+...... .
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (417)
T d1pv7a_ 183 LLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFG 262 (417)
T ss_dssp HHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHhcccccchhhhhhhhhhcccccccccccccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhc
Confidence 1111111100000 000000 0000111111111111111111111111111111111110 0
Q ss_pred CcccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccC
Q psy10222 510 TIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTE 589 (1693)
Q Consensus 510 ~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p 589 (1693)
........+..++..+.+++.||+|||+.+..+..+..++.+...+.++.+.+++..++.|++.+...+...+++.|..|
T Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 342 (417)
T d1pv7a_ 263 YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFE 342 (417)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 01223334666788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHH-HHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHhhc
Q psy10222 590 PRYRGAILAIV-SLAISSGIFISHLLGTFL----HWKTASAVCALFPFISCIFVYS 640 (1693)
Q Consensus 590 ~~~Rg~~~~~~-~~~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~~~ 640 (1693)
++.||++.+.. ++...+|..+++.+.+.+ +|+..+.+.++..++..+...+
T Consensus 343 ~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 343 VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999875 566778888888776655 7888888877777666555443
|