Psyllid ID: psy10297

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
MECSGGNTSQIVNTDPSAKPEYSIPIITPASHPPPSATYQGFAATKRLLKCFPSRKSNESQCPMLASKANNIAANNTAASQFTLEKKLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFKCSSLNHMMREEFYHSQYGDPTHEIRSDHEFDPSDMEHNMCD
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccHHHccccHHHHHHHHHHHccccccccccHHHHHHHccccccccccccccccccccccccccc
ccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccc
mecsggntsqivntdpsakpeysipiitpashpppsatyqgFAATKRLLKcfpsrksnesqcpmLASKANNiaanntaaSQFTLEKKLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIImttspnlrkkmQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIrpflsspeliphsISSFFLWLGYANSLLNPVIYATlnrdfrkpFQQILYFKCSslnhmmreefyhsqygdptheirsdhefdpsdmehnmcd
mecsggntsqivntdpsakPEYSIPIITPASHPPPSATYQGFAATKRLLKCFPSRKSNESQCPMLASKANNIAANNTAASQFTLEKKLRKKMQTNNLQQTTKKLRFQLAkerkasttlgiimttspnlrkkmqtNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFKCSSLNHMMREEFYHSQYGDPTHEIRSDHefdpsdmehnmcd
MECSGGNTSQIVNTDPSAKPEYSIPIITPASHPPPSATYQGFAATKRLLKCFPSRKSNESQCPMLaskanniaanntaaSQFTLEKKLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFKCSSLNHMMREEFYHSQYGDPTHEIRSDHEFDPSDMEHNMCD
****************************************GFAATKRLLKCF*****************************************************************LGII**************************L****KASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFKCSSLNHMMREEFYHS**************************
******************************************************************************************KM*************************************************************ASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFKCSSLNH***********************************
**********IVNTDPSAKPEYSIPIITPASHPPPSATYQGFAATKRLLKCFPSRKSNESQCPMLASKANNIAANNTAASQFTLEKKLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFKCSSLNHMMREEFYHSQYGDPTHEIRSDHEFDP*********
***********************************************LLKCFPSRKSNESQCPMLASKANNIAANNTAASQFTLEKKLRKKMQTNNLQQTTKKLRFQLAKE*******************************KLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFKCSSLN************************************
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MECSGGNTSQIVNTDPSAKPEYSIPIITPASHPPPSATYQGFAATKRLLKCFPSRKSNESQCPMLASKANNIAANNTAASQFTLEKKLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFKCSSLNHMMREEFYHSQYGDPTHEIRSDHEFDPSDMEHNMCD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query270 2.2.26 [Sep-21-2011]
P20905564 5-hydroxytryptamine recep yes N/A 0.392 0.187 0.805 3e-47
Q25414509 5-hydroxytryptamine recep N/A N/A 0.366 0.194 0.51 3e-23
Q17232479 Octopamine receptor OS=Bo N/A N/A 0.370 0.208 0.5 2e-22
P49144390 5-hydroxytryptamine recep yes N/A 0.537 0.371 0.382 3e-22
Q0EAB5390 5-hydroxytryptamine recep yes N/A 0.559 0.387 0.365 3e-22
Q60484376 5-hydroxytryptamine recep yes N/A 0.366 0.263 0.456 4e-22
P28565374 5-hydroxytryptamine recep yes N/A 0.388 0.280 0.438 5e-22
Q61224374 5-hydroxytryptamine recep yes N/A 0.388 0.280 0.438 5e-22
Q6XXX8389 5-hydroxytryptamine recep N/A N/A 0.4 0.277 0.425 1e-21
O42384416 5-hydroxytryptamine recep N/A N/A 0.337 0.218 0.494 1e-21
>sp|P20905|5HT1R_DROME 5-hydroxytryptamine receptor 1 OS=Drosophila melanogaster GN=5-HT7 PE=2 SV=1 Back     alignment and function desciption
 Score =  188 bits (478), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 87/108 (80%), Positives = 97/108 (89%), Gaps = 2/108 (1%)

Query: 142 KKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGY 201
           KKLRFQLAKE+KASTTLGIIMSAFTVCWLPFF+LALIRPF +    +P S+SS FLWLGY
Sbjct: 440 KKLRFQLAKEKKASTTLGIIMSAFTVCWLPFFILALIRPFETMH--VPASLSSLFLWLGY 497

Query: 202 ANSLLNPVIYATLNRDFRKPFQQILYFKCSSLNHMMREEFYHSQYGDP 249
           ANSLLNP+IYATLNRDFRKPFQ+ILYF+CSSLN MMRE +Y  QYG+P
Sbjct: 498 ANSLLNPIIYATLNRDFRKPFQEILYFRCSSLNTMMRENYYQDQYGEP 545
This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.
Drosophila melanogaster (taxid: 7227)
>sp|Q25414|5HTR_LYMST 5-hydroxytryptamine receptor OS=Lymnaea stagnalis PE=2 SV=1 Back     alignment and function description
>sp|Q17232|OAR_BOMMO Octopamine receptor OS=Bombyx mori PE=2 SV=1 Back     alignment and function description
>sp|P49144|5HT1B_RABIT 5-hydroxytryptamine receptor 1B OS=Oryctolagus cuniculus GN=HTR1B PE=2 SV=1 Back     alignment and function description
>sp|Q0EAB5|5HT1B_HORSE 5-hydroxytryptamine receptor 1B OS=Equus caballus GN=HTR1B PE=2 SV=1 Back     alignment and function description
>sp|Q60484|5HT1D_CAVPO 5-hydroxytryptamine receptor 1D OS=Cavia porcellus GN=HTR1D PE=3 SV=1 Back     alignment and function description
>sp|P28565|5HT1D_RAT 5-hydroxytryptamine receptor 1D OS=Rattus norvegicus GN=Htr1d PE=3 SV=1 Back     alignment and function description
>sp|Q61224|5HT1D_MOUSE 5-hydroxytryptamine receptor 1D OS=Mus musculus GN=Htr1d PE=2 SV=2 Back     alignment and function description
>sp|Q6XXX8|5HT1B_VULVU 5-hydroxytryptamine receptor 1B OS=Vulpes vulpes GN=HTR1B PE=3 SV=1 Back     alignment and function description
>sp|O42384|5H1AB_TAKRU 5-hydroxytryptamine receptor 1A-beta OS=Takifugu rubripes GN=htr1a-B PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query270
189241377 481 PREDICTED: similar to serotonin receptor 0.770 0.432 0.498 4e-57
270014234 486 hypothetical protein TcasGA2_TC011667 [T 0.629 0.349 0.563 5e-57
332375634 484 unknown [Dendroctonus ponderosae] 0.648 0.361 0.525 5e-53
350420216211 PREDICTED: 5-hydroxytryptamine receptor 0.681 0.872 0.524 4e-52
357608525314 hypothetical protein KGM_10748 [Danaus p 0.696 0.598 0.554 7e-52
242009455 493 class A rhodopsin-like G-protein coupled 0.511 0.279 0.692 1e-51
383860442 505 PREDICTED: 5-hydroxytryptamine receptor 0.662 0.354 0.520 2e-51
118150508 501 serotonin receptor 7 [Apis mellifera] gi 0.737 0.397 0.487 3e-50
345479387 541 PREDICTED: 5-hydroxytryptamine receptor 0.674 0.336 0.529 5e-50
380011233 504 PREDICTED: LOW QUALITY PROTEIN: 5-hydrox 0.655 0.351 0.523 8e-50
>gi|189241377|ref|XP_966577.2| PREDICTED: similar to serotonin receptor 7 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 127/255 (49%), Positives = 157/255 (61%), Gaps = 47/255 (18%)

Query: 10  QIVNTDPSAKPEYSIPIITPASHPPPSATYQGFAAT----KRLLKCFPSRKSNESQCPML 65
           +I   +    PE  I   +P+   P    ++  +A+      L +CF SR SNESQCPML
Sbjct: 242 EISVKNGGGPPENKISSQSPSPANPSRINHRSSSASTNTMSSLGRCFKSRHSNESQCPML 301

Query: 66  ASKANNIAANNTAASQFTLEKKLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMTTS 125
           ++KA                           ++QTTK        +++  ++L   M +S
Sbjct: 302 SNKAP--------------------------IKQTTK--------DKQQKSSLLASMKSS 327

Query: 126 PNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSP 185
           PN      TN+  Q  KKLRFQLAKERKASTTLGIIMSAFT+CWLPFFVLAL+RPFL + 
Sbjct: 328 PN------TNSTNQ--KKLRFQLAKERKASTTLGIIMSAFTICWLPFFVLALVRPFLKTT 379

Query: 186 ELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFKCSSLNHMMREEFYHSQ 245
            ++  ++ S FLWLGYANSL NP+IYATLNRDFRKPFQ ILYF+C SLNHMMREEFYHSQ
Sbjct: 380 HML-KTLGSLFLWLGYANSLFNPIIYATLNRDFRKPFQAILYFRCGSLNHMMREEFYHSQ 438

Query: 246 YGDPTHEIRSDHEFD 260
           YGDP H I +    D
Sbjct: 439 YGDPDHHISTRCHLD 453

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|270014234|gb|EFA10682.1| hypothetical protein TcasGA2_TC011667 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|332375634|gb|AEE62958.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|350420216|ref|XP_003492437.1| PREDICTED: 5-hydroxytryptamine receptor 1-like, partial [Bombus impatiens] Back     alignment and taxonomy information
>gi|357608525|gb|EHJ66047.1| hypothetical protein KGM_10748 [Danaus plexippus] Back     alignment and taxonomy information
>gi|242009455|ref|XP_002425501.1| class A rhodopsin-like G-protein coupled receptor GPR5ht3, putative [Pediculus humanus corporis] gi|212509356|gb|EEB12763.1| class A rhodopsin-like G-protein coupled receptor GPR5ht3, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|383860442|ref|XP_003705698.1| PREDICTED: 5-hydroxytryptamine receptor 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|118150508|ref|NP_001071289.1| serotonin receptor 7 [Apis mellifera] gi|112807683|emb|CAJ28210.1| serotonin receptor [Apis mellifera] Back     alignment and taxonomy information
>gi|345479387|ref|XP_001606275.2| PREDICTED: 5-hydroxytryptamine receptor 1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|380011233|ref|XP_003689715.1| PREDICTED: LOW QUALITY PROTEIN: 5-hydroxytryptamine receptor 1-like [Apis florea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query270
FB|FBgn0004573564 5-HT7 "Serotonin receptor 7" [ 0.392 0.187 0.805 6.4e-44
UNIPROTKB|F1NAZ2422 HTR1A "Uncharacterized protein 0.355 0.227 0.469 1.3e-22
UNIPROTKB|F1RQK2390 HTR1B "5-hydroxytryptamine rec 0.544 0.376 0.381 4e-22
RGD|2847374 Htr1d "5-hydroxytryptamine (se 0.4 0.288 0.435 9e-22
UNIPROTKB|P28222390 HTR1B "5-hydroxytryptamine rec 0.544 0.376 0.375 1.2e-21
MGI|MGI:96276374 Htr1d "5-hydroxytryptamine (se 0.388 0.280 0.438 1.5e-21
WB|WBGene00004780435 ser-7 [Caenorhabditis elegans 0.4 0.248 0.432 1.9e-21
MGI|MGI:96274386 Htr1b "5-hydroxytryptamine (se 0.540 0.378 0.371 1.9e-21
UNIPROTKB|P79250389 HTR1B "5-hydroxytryptamine rec 0.540 0.375 0.364 2.1e-21
UNIPROTKB|F1NX43382 HTR1B "Uncharacterized protein 0.403 0.285 0.412 5.2e-21
FB|FBgn0004573 5-HT7 "Serotonin receptor 7" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 87/108 (80%), Positives = 97/108 (89%)

Query:   142 KKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGY 201
             KKLRFQLAKE+KASTTLGIIMSAFTVCWLPFF+LALIRPF +    +P S+SS FLWLGY
Sbjct:   440 KKLRFQLAKEKKASTTLGIIMSAFTVCWLPFFILALIRPFETMH--VPASLSSLFLWLGY 497

Query:   202 ANSLLNPVIYATLNRDFRKPFQQILYFKCSSLNHMMREEFYHSQYGDP 249
             ANSLLNP+IYATLNRDFRKPFQ+ILYF+CSSLN MMRE +Y  QYG+P
Sbjct:   498 ANSLLNPIIYATLNRDFRKPFQEILYFRCSSLNTMMRENYYQDQYGEP 545
GO:0007210 "serotonin receptor signaling pathway" evidence=ISS
GO:0004993 "serotonin receptor activity" evidence=ISS;NAS;TAS
GO:0005886 "plasma membrane" evidence=ISS
GO:0005887 "integral to plasma membrane" evidence=NAS
GO:0007192 "adenylate cyclase-activating serotonin receptor signaling pathway" evidence=NAS;TAS
GO:0016021 "integral to membrane" evidence=IEA;ISS
GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS
GO:0004952 "dopamine neurotransmitter receptor activity" evidence=IEA
GO:0016545 "male courtship behavior, veined wing vibration" evidence=IMP
GO:0060180 "female mating behavior" evidence=IMP
GO:0016546 "male courtship behavior, proboscis-mediated licking" evidence=IMP
GO:0060179 "male mating behavior" evidence=IMP
GO:0016543 "male courtship behavior, orientation prior to leg tapping and wing vibration" evidence=IMP
GO:0007619 "courtship behavior" evidence=IMP
UNIPROTKB|F1NAZ2 HTR1A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1RQK2 HTR1B "5-hydroxytryptamine receptor 1B" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|2847 Htr1d "5-hydroxytryptamine (serotonin) receptor 1D, G protein-coupled" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P28222 HTR1B "5-hydroxytryptamine receptor 1B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:96276 Htr1d "5-hydroxytryptamine (serotonin) receptor 1D" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
WB|WBGene00004780 ser-7 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
MGI|MGI:96274 Htr1b "5-hydroxytryptamine (serotonin) receptor 1B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P79250 HTR1B "5-hydroxytryptamine receptor 1B" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NX43 HTR1B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query270
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 2e-19
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score = 84.3 bits (209), Expect = 2e-19
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 128 LRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPF-LSSPE 186
           LR   +      +  + +   +KERKA+  L +++  F +CWLP+ ++ L+      S  
Sbjct: 167 LRTLRKRARSGASQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIW 226

Query: 187 LIPHSISSFFLWLGYANSLLNPVIY 211
            +  +     LWL Y NS LNP+IY
Sbjct: 227 RLLPTALLITLWLAYVNSCLNPIIY 251

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 270
KOG4219|consensus423 99.84
PHA03234338 DNA packaging protein UL33; Provisional 99.81
PHA03235409 DNA packaging protein UL33; Provisional 99.76
PHA02834323 chemokine receptor-like protein; Provisional 99.75
KOG4220|consensus503 99.73
PHA02638417 CC chemokine receptor-like protein; Provisional 99.72
PHA03087335 G protein-coupled chemokine receptor-like protein; 99.58
PF00001257 7tm_1: 7 transmembrane receptor (rhodopsin family) 99.5
KOG2087|consensus363 99.29
PF10324318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 98.89
PF10320257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 98.06
PF10323283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 97.95
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 97.64
PF10321313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 97.45
PF05462303 Dicty_CAR: Slime mold cyclic AMP receptor 96.94
PF02101405 Ocular_alb: Ocular albinism type 1 protein; InterP 96.88
PF10328274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 96.84
PF1197076 Git3_C: G protein-coupled glucose receptor regulat 96.57
PF10327303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 95.85
PF10317292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 95.37
PF10318302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 92.94
KOG4564|consensus473 92.67
PF10326307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 92.54
KOG4193|consensus610 91.45
PF03402265 V1R: Vomeronasal organ pheromone receptor family, 91.02
PF10319310 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept 88.36
>KOG4219|consensus Back     alignment and domain information 
Probab=99.84  E-value=1.5e-21  Score=178.40  Aligned_cols=128  Identities=17%  Similarity=0.305  Sum_probs=109.4

Q ss_pred             hHHHHHHHhhhccccchheehhchHHHHHHHHhhccchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q psy10297        102 KKLRFQLAKERKASTTLGIIMTTSPNLRKKMQTNNLQQTTK-KLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRP  180 (270)
Q Consensus       102 ~ki~~~l~~~~~~~~Pl~ii~~~Y~~I~~~lr~~~~~~~~~-~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~  180 (270)
                      +|.|+....+.+|.+|++||.++|..|.+++|..+..+.++ +..++.+.++|++||+++|++.|.+||+||++..++..
T Consensus       206 ~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d~~~~~~kak~K~vkmliiVV~~FaicWlPyh~y~il~~  285 (423)
T KOG4219|consen  206 MQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQDRKHEQLKAKKKVVKMLIIVVVIFAICWLPYHIYFILNA  285 (423)
T ss_pred             hcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhchhhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHH
Confidence            47789999999999999999999999999999887543333 34567788999999999999999999999999999886


Q ss_pred             hcCCC--CcchHHHHHHHHHHhhhhhcchHHhhhhcchHHHHHHHHHhhhh
Q psy10297        181 FLSSP--ELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFK  229 (270)
Q Consensus       181 ~~~~~--~~~~~~~~~i~~~La~~NS~iNPiIY~~~~~~FR~~~~~ll~~~  229 (270)
                      ....-  ......++....||+..|+|+||+||+++|++||.+|++.|+++
T Consensus       286 ~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~c  336 (423)
T KOG4219|consen  286 TNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWC  336 (423)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhhee
Confidence            54321  23346788899999999999999999999999999999999844

>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4564|consensus Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query270
2vt4_A313 Turkey Beta1 Adrenergic Receptor With Stabilising M 4e-18
2y00_B315 Turkey Beta1 Adrenergic Receptor With Stabilising M 1e-16
3p0g_A501 Structure Of A Nanobody-Stabilized Active State Of 5e-15
2rh1_A500 High Resolution Crystal Structure Of Human B2-Adren 5e-15
3d4s_A490 Cholesterol Bound Form Of Human Beta2 Adrenergic Re 7e-15
3rze_A452 Structure Of The Human Histamine H1 Receptor In Com 7e-15
3pds_A458 Irreversible Agonist-Beta2 Adrenoceptor Complex Len 1e-14
3pbl_A481 Structure Of The Human Dopamine D3 Receptor In Comp 4e-14
3sn6_R514 Crystal Structure Of The Beta2 Adrenergic Receptor- 8e-14
2r4r_A365 Crystal Structure Of The Human Beta2 Adrenoceptor L 2e-13
3kj6_A366 Crystal Structure Of A Methylated Beta2 Adrenergic 2e-13
2r4s_A342 Crystal Structure Of The Human Beta2 Adrenoceptor L 2e-13
4gbr_A309 N-terminal T4 Lysozyme Fusion Facilitates Crystalli 5e-13
4daj_A479 Structure Of The M3 Muscarinic Acetylcholine Recept 5e-11
3eml_A488 The 2.6 A Crystal Structure Of A Human A2a Adenosin 4e-09
3uon_A467 Structure Of The Human M2 Muscarinic Acetylcholine 1e-08
4eiy_A447 Crystal Structure Of The Chimeric Protein Of A2aar- 2e-08
3vg9_A326 Crystal Structure Of Human Adenosine A2a Receptor W 3e-07
2ydo_A325 Thermostabilised Human A2a Receptor With Adenosine 3e-07
4dkl_A464 Crystal Structure Of The Mu-Opioid Receptor Bound T 7e-07
3pwh_A329 Thermostabilised Adenosine A2a Receptor Length = 32 2e-06
4ej4_A461 Structure Of The Delta Opioid Receptor Bound To Nal 3e-05
2ks9_A364 Solution Conformation Of Substance P In Water Compl 3e-05
3v2w_A520 Crystal Structure Of A Lipid G Protein-Coupled Rece 3e-05
4grv_A510 The Crystal Structure Of The Neurotensin Receptor N 1e-04
4djh_A480 Structure Of The Human Kappa Opioid Receptor In Com 2e-04
4ea3_B434 Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI 5e-04
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313 Back     alignment and structure 
Iteration: 1

 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 64/98 (65%), Gaps = 3/98 (3%)
Query: 131 KMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPH 190
           K Q   + + +K+ R  L +E KA  TLGIIM  FT+CWLPFF++ ++  F  + +L+P 
Sbjct: 205 KEQIRKIDRASKRKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVF--NRDLVPD 262
Query: 191 SISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYF 228
            +   F WLGYANS +NP+IY   + DFRK F+++L F
Sbjct: 263 WLFVAFNWLGYANSAMNPIIYCR-SPDFRKAFKRLLAF 299
>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315 Back     alignment and structure
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501 Back     alignment and structure
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500 Back     alignment and structure
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490 Back     alignment and structure
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452 Back     alignment and structure
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458 Back     alignment and structure
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481 Back     alignment and structure
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514 Back     alignment and structure
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365 Back     alignment and structure
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366 Back     alignment and structure
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342 Back     alignment and structure
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309 Back     alignment and structure
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479 Back     alignment and structure
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488 Back     alignment and structure
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467 Back     alignment and structure
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447 Back     alignment and structure
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326 Back     alignment and structure
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325 Back     alignment and structure
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464 Back     alignment and structure
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329 Back     alignment and structure
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461 Back     alignment and structure
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364 Back     alignment and structure
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At 3.35a Length = 520 Back     alignment and structure
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In Complex With Neurotensin (8-13) Length = 510 Back     alignment and structure
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480 Back     alignment and structure
>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query270
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 3e-35
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 3e-34
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 3e-34
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 3e-33
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 4e-33
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 6e-33
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 5e-32
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 2e-31
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 8e-31
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 2e-17
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 2e-16
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 7e-16
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 3e-13
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 5e-13
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 4e-10
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
 Score =  131 bits (329), Expect = 3e-35
 Identities = 35/137 (25%), Positives = 58/137 (42%)

Query: 110 KERKASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCW 169
            E   +         +PN  K++ T     T    R  L KE  A+ +L II+  F +CW
Sbjct: 349 DEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCW 408

Query: 170 LPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFK 229
           LP  ++     F       P  +    + L + NS++NP IYA   R+FR+ F++I+   
Sbjct: 409 LPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSH 468

Query: 230 CSSLNHMMREEFYHSQY 246
                   +   +H  +
Sbjct: 469 VLRQQEPFKAHHHHHHH 485
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query270
4grv_A510 Neurotensin receptor type 1, lysozyme chimera; G-p 99.9
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 99.86
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 99.86
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 99.85
3vw7_A484 Proteinase-activated receptor 1, lysozyme; high re 99.85
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 99.82
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 99.82
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 99.82
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 99.81
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 99.81
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 99.81
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 99.8
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 99.8
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 99.79
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 99.78
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 99.77
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 99.76
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 99.76
2koe_A40 Human cannabinoid receptor 1 - helix 7/8 peptide; 98.87
2ki9_A33 Cannabinoid receptor 2; GPCR, G-protein coupled re 98.39
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=99.90  E-value=3.8e-25  Score=211.61  Aligned_cols=89  Identities=28%  Similarity=0.513  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCc------chHHHHHHHHHHhhhhhcchHHhhhhcchHHHHHH
Q psy10297        149 AKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPEL------IPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPF  222 (270)
Q Consensus       149 ~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~~~~~------~~~~~~~i~~~La~~NS~iNPiIY~~~~~~FR~~~  222 (270)
                      ++++|++||+++|+++|++||+||+++.++..+......      ...+++.++.||+|+|||+|||||+++|++||++|
T Consensus       402 ~~erk~~k~L~iVv~~F~iCWlPf~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR~aF  481 (510)
T 4grv_A          402 QALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFRQVF  481 (510)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            457899999999999999999999999999887754321      22456778899999999999999999999999999


Q ss_pred             HHHhhhhcCCCCcCC
Q psy10297        223 QQILYFKCSSLNHMM  237 (270)
Q Consensus       223 ~~ll~~~c~~~~~~~  237 (270)
                      +++|+|+|.+.+++.
T Consensus       482 k~iL~C~C~~~r~RR  496 (510)
T 4grv_A          482 LSTLACLCPGWRHRR  496 (510)
T ss_dssp             ---------------
T ss_pred             HHHHhhcCCCCCCCC
Confidence            999988776554433
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 270
d1u19a_348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 2e-14
d1eysm_318 f.26.1.1 (M:) M (medium) subunit {Thermochromatium 0.002
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.0 bits (170), Expect = 2e-14
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 1/85 (1%)

Query: 150 KERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPV 209
            E++ +  + I++ AF +CWLP+  +A    F            +   +    +++ NPV
Sbjct: 246 AEKEVTRMVIIMVIAFLICWLPYAGVAFYI-FTHQGSDFGPIFMTIPAFFAKTSAVYNPV 304

Query: 210 IYATLNRDFRKPFQQILYFKCSSLN 234
           IY  +N+ FR      L    + L 
Sbjct: 305 IYIMMNKQFRNCMVTTLCCGKNPLG 329

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query270
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 99.78
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=1.1e-19  Score=161.03  Aligned_cols=123  Identities=19%  Similarity=0.237  Sum_probs=101.8

Q ss_pred             hHHHHHHHhhhccccchheehhchHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q psy10297        102 KKLRFQLAKERKASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPF  181 (270)
Q Consensus       102 ~ki~~~l~~~~~~~~Pl~ii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~  181 (270)
                      ...+..........+|+++++++|.+|.++++++.....  ....+.++++|+++++++++++|++||+||.++.++...
T Consensus       200 ~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~  277 (348)
T d1u19a_         200 NESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQ--ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFT  277 (348)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSC--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc--hhhhhHHHHhhHhheEEEeehHHHHHhhHHHhhhheeec
Confidence            345556666677889999999999999999988765332  223345678999999999999999999999999887766


Q ss_pred             cCCCCcchHHHHHHHHHHhhhhhcchHHhhhhcchHHHHHHHHHhh
Q psy10297        182 LSSPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILY  227 (270)
Q Consensus       182 ~~~~~~~~~~~~~i~~~La~~NS~iNPiIY~~~~~~FR~~~~~ll~  227 (270)
                      ... ......+..+..+++++|+++||+||++++++||++++++++
T Consensus       278 ~~~-~~~~~~~~~~~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~l~  322 (348)
T d1u19a_         278 HQG-SDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLC  322 (348)
T ss_dssp             TTT-SCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHT
T ss_pred             cCC-ccccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhC
Confidence            554 344567778889999999999999999999999999999995